Query 011718
Match_columns 479
No_of_seqs 433 out of 3674
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 13:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 6.1E-45 2.1E-49 342.2 26.9 253 96-358 34-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 2E-44 6.9E-49 337.3 24.7 245 101-360 20-266 (284)
3 4f02_A Polyadenylate-binding p 100.0 1.2E-35 4.3E-40 264.7 15.4 170 102-360 14-183 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 1.3E-32 4.3E-37 242.7 19.0 178 99-363 9-188 (196)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.3E-32 7.8E-37 234.8 17.7 163 102-355 2-168 (168)
6 2qfj_A FBP-interacting repress 100.0 1.2E-31 4.2E-36 240.2 22.8 178 103-360 28-207 (216)
7 1fxl_A Paraneoplastic encephal 100.0 8.3E-32 2.8E-36 231.0 19.6 162 103-355 2-167 (167)
8 3md3_A Nuclear and cytoplasmic 100.0 6.8E-32 2.3E-36 231.3 18.6 164 104-357 1-166 (166)
9 2cjk_A Nuclear polyadenylated 100.0 2.6E-32 9E-37 234.1 14.2 163 102-358 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 3.6E-31 1.2E-35 228.9 19.3 165 102-356 2-175 (175)
11 3tyt_A Heterogeneous nuclear r 100.0 1E-30 3.5E-35 230.0 16.3 196 101-355 2-204 (205)
12 3pgw_A U1-A; protein-RNA compl 100.0 8.1E-30 2.8E-34 237.9 22.0 250 99-356 5-281 (282)
13 2g4b_A Splicing factor U2AF 65 100.0 5.1E-30 1.8E-34 220.9 16.1 157 102-356 3-172 (172)
14 1fje_B Nucleolin RBD12, protei 100.0 8.9E-31 3E-35 226.4 11.2 166 98-358 8-174 (175)
15 2adc_A Polypyrimidine tract-bi 100.0 5.7E-29 2E-33 224.2 20.2 195 100-358 31-228 (229)
16 2yh0_A Splicing factor U2AF 65 100.0 2.5E-29 8.7E-34 221.9 17.6 181 102-360 3-196 (198)
17 1qm9_A Polypyrimidine tract-bi 100.0 6.6E-29 2.3E-33 219.0 15.5 193 102-358 2-197 (198)
18 3sde_A Paraspeckle component 1 100.0 1.1E-28 3.6E-33 226.9 16.0 158 100-360 19-181 (261)
19 3smz_A Protein raver-1, ribonu 99.9 2E-26 7E-31 215.1 18.1 165 100-269 92-266 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 4.3E-26 1.5E-30 213.7 14.8 162 101-267 115-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 1E-20 3.5E-25 159.8 16.8 137 224-361 10-153 (158)
22 4f25_A Polyadenylate-binding p 99.9 1.1E-21 3.7E-26 155.8 9.6 97 101-199 3-113 (115)
23 4fxv_A ELAV-like protein 1; RN 99.8 3.9E-21 1.3E-25 147.7 10.3 82 101-182 17-98 (99)
24 3s8s_A Histone-lysine N-methyl 99.8 7.5E-20 2.6E-24 143.3 10.9 84 100-183 3-86 (110)
25 4fxv_A ELAV-like protein 1; RN 99.8 7.5E-20 2.6E-24 140.5 10.1 79 279-357 18-98 (99)
26 2i2y_A Fusion protein consists 99.8 4.1E-20 1.4E-24 154.4 9.3 130 224-359 10-149 (150)
27 2lxi_A RNA-binding protein 10; 99.8 2.4E-20 8E-25 141.1 4.3 83 103-185 1-85 (91)
28 2lkz_A RNA-binding protein 5; 99.8 7.1E-20 2.4E-24 138.8 6.3 81 102-182 8-94 (95)
29 3q2s_C Cleavage and polyadenyl 99.8 2.3E-20 7.7E-25 166.5 4.2 79 280-358 68-150 (229)
30 2dnz_A Probable RNA-binding pr 99.8 7.8E-19 2.7E-23 134.5 11.8 85 100-184 2-86 (95)
31 3lqv_A PRE-mRNA branch site pr 99.8 2.7E-19 9.2E-24 142.3 9.4 105 100-209 5-109 (115)
32 3md1_A Nuclear and cytoplasmic 99.8 8.9E-19 3E-23 130.5 10.4 81 103-183 1-81 (83)
33 2jrs_A RNA-binding protein 39; 99.8 1.2E-18 4.2E-23 136.2 11.6 86 98-183 21-106 (108)
34 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.6E-19 2.3E-23 132.5 9.7 83 101-183 4-86 (87)
35 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.5E-19 1.9E-23 132.3 9.1 82 100-181 4-85 (85)
36 2lxi_A RNA-binding protein 10; 99.8 3.4E-19 1.2E-23 134.7 8.0 81 280-360 1-85 (91)
37 2la6_A RNA-binding protein FUS 99.8 1.6E-18 5.5E-23 133.7 11.4 85 97-181 7-99 (99)
38 2dgs_A DAZ-associated protein 99.8 1.6E-18 5.6E-23 133.7 11.4 85 99-184 6-90 (99)
39 2cq0_A Eukaryotic translation 99.8 9E-19 3.1E-23 136.3 10.0 86 99-184 11-96 (103)
40 3p5t_L Cleavage and polyadenyl 99.8 3.8E-19 1.3E-23 134.5 7.6 80 104-183 2-83 (90)
41 1whw_A Hypothetical protein ri 99.8 9.5E-19 3.3E-23 135.1 9.9 85 100-184 5-89 (99)
42 4f25_A Polyadenylate-binding p 99.8 6.5E-19 2.2E-23 139.7 9.1 82 280-361 5-86 (115)
43 2x1f_A MRNA 3'-END-processing 99.8 9.6E-19 3.3E-23 134.1 9.5 85 102-186 1-85 (96)
44 2do4_A Squamous cell carcinoma 99.8 2.1E-18 7.1E-23 133.4 11.4 85 99-184 13-97 (100)
45 1x5u_A Splicing factor 3B subu 99.8 1.3E-18 4.4E-23 136.0 10.2 87 98-184 10-96 (105)
46 1whw_A Hypothetical protein ri 99.8 4.2E-18 1.4E-22 131.5 12.9 82 280-361 8-91 (99)
47 2cqc_A Arginine/serine-rich sp 99.8 1.1E-18 3.7E-23 133.7 9.5 84 99-182 11-94 (95)
48 2dnm_A SRP46 splicing factor; 99.8 9.7E-19 3.3E-23 136.1 9.3 85 99-183 9-93 (103)
49 2kxn_B Transformer-2 protein h 99.8 1.6E-18 5.4E-23 140.0 10.8 86 98-183 41-126 (129)
50 2cpz_A CUG triplet repeat RNA- 99.8 1.3E-18 4.6E-23 138.2 10.2 85 100-184 22-106 (115)
51 3pgw_S U1-70K; protein-RNA com 99.8 3.9E-19 1.3E-23 173.6 8.6 82 279-360 101-184 (437)
52 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-18 4E-23 135.4 9.6 86 99-184 8-93 (102)
53 1p27_B RNA-binding protein 8A; 99.8 1.8E-18 6.2E-23 135.3 10.7 84 100-183 20-103 (106)
54 2e5h_A Zinc finger CCHC-type a 99.8 1.1E-18 3.6E-23 133.5 9.1 83 99-181 12-94 (94)
55 2dgo_A Cytotoxic granule-assoc 99.8 2.1E-18 7.1E-23 137.1 10.8 86 99-184 11-96 (115)
56 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.5E-18 1.5E-22 132.3 12.4 84 279-362 14-97 (103)
57 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.5E-18 8.6E-23 144.6 11.2 83 279-361 38-122 (156)
58 2kn4_A Immunoglobulin G-bindin 99.8 7.4E-18 2.5E-22 142.2 14.2 133 132-270 2-153 (158)
59 1x4h_A RNA-binding protein 28; 99.8 2.3E-18 7.8E-23 136.0 10.3 87 98-184 10-102 (111)
60 2cpf_A RNA binding motif prote 99.8 1.5E-18 5.1E-23 133.7 9.0 84 101-184 3-89 (98)
61 3ns6_A Eukaryotic translation 99.8 6E-19 2E-23 136.1 6.7 82 102-183 5-93 (100)
62 1s79_A Lupus LA protein; RRM, 99.8 1.6E-18 5.4E-23 133.9 9.0 80 100-181 8-87 (103)
63 2dnh_A Bruno-like 5, RNA bindi 99.8 5.7E-18 2E-22 132.2 12.3 84 100-184 12-98 (105)
64 2d9p_A Polyadenylate-binding p 99.8 4.6E-18 1.6E-22 132.2 11.6 83 100-184 12-94 (103)
65 2cph_A RNA binding motif prote 99.8 3.1E-18 1E-22 134.3 10.6 87 99-185 11-99 (107)
66 2dgx_A KIAA0430 protein; RRM d 99.8 4.1E-18 1.4E-22 130.4 11.0 81 279-360 8-92 (96)
67 1x5t_A Splicing factor 3B subu 99.8 1.1E-18 3.7E-23 133.9 7.7 84 101-184 3-87 (96)
68 2cq3_A RNA-binding protein 9; 99.8 6.9E-18 2.4E-22 131.2 12.3 85 278-362 13-97 (103)
69 3s8s_A Histone-lysine N-methyl 99.8 3.1E-18 1.1E-22 134.0 10.3 80 280-359 6-87 (110)
70 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.2E-18 4.1E-23 135.3 7.6 85 100-184 9-93 (102)
71 1x4e_A RNA binding motif, sing 99.8 1.3E-18 4.4E-23 130.2 7.5 82 100-181 2-83 (85)
72 2dhg_A TRNA selenocysteine ass 99.8 4.7E-18 1.6E-22 132.5 11.0 84 99-183 5-90 (104)
73 2dgu_A Heterogeneous nuclear r 99.8 1.1E-17 3.9E-22 129.9 13.0 79 279-363 10-88 (103)
74 2lea_A Serine/arginine-rich sp 99.8 1.4E-18 4.9E-23 141.6 8.3 123 229-361 6-130 (135)
75 2dgp_A Bruno-like 4, RNA bindi 99.8 2.7E-18 9.2E-23 134.3 9.5 86 99-184 9-97 (106)
76 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-17 3.7E-22 133.0 13.1 84 279-362 14-99 (115)
77 1sjq_A Polypyrimidine tract-bi 99.8 2.3E-18 7.8E-23 131.6 8.7 80 99-184 12-93 (105)
78 2fy1_A RNA-binding motif prote 99.8 4.2E-18 1.4E-22 135.1 10.6 83 100-183 4-86 (116)
79 2dnz_A Probable RNA-binding pr 99.8 6.2E-18 2.1E-22 129.4 11.2 81 280-360 5-87 (95)
80 3q2s_C Cleavage and polyadenyl 99.8 1.4E-18 4.8E-23 154.9 8.5 81 102-182 67-149 (229)
81 2div_A TRNA selenocysteine ass 99.8 3E-18 1E-22 132.2 9.3 84 100-183 6-94 (99)
82 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3E-18 1E-22 145.3 10.1 85 99-183 68-152 (165)
83 2lkz_A RNA-binding protein 5; 99.8 1.3E-18 4.6E-23 131.7 7.0 78 280-357 9-94 (95)
84 2cqd_A RNA-binding region cont 99.7 1.8E-17 6.1E-22 131.9 13.8 81 279-360 16-98 (116)
85 1sjq_A Polypyrimidine tract-bi 99.7 3.4E-18 1.2E-22 130.6 9.2 79 280-362 16-96 (105)
86 2ywk_A Putative RNA-binding pr 99.7 3.8E-18 1.3E-22 130.6 9.5 82 100-182 13-94 (95)
87 3s7r_A Heterogeneous nuclear r 99.7 4.1E-18 1.4E-22 128.1 9.5 81 99-180 7-87 (87)
88 2dgv_A HnRNP M, heterogeneous 99.7 9.4E-18 3.2E-22 127.6 11.4 83 100-184 5-87 (92)
89 2dgs_A DAZ-associated protein 99.7 9.9E-18 3.4E-22 129.3 11.5 83 279-362 9-93 (99)
90 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6.8E-18 2.3E-22 131.0 10.6 84 279-362 11-96 (102)
91 2do0_A HnRNP M, heterogeneous 99.7 1.6E-17 5.5E-22 131.8 12.9 81 280-360 15-96 (114)
92 2wbr_A GW182, gawky, LD47780P; 99.7 2.2E-18 7.5E-23 124.9 7.0 73 102-180 6-78 (89)
93 2khc_A Testis-specific RNP-typ 99.7 2.7E-18 9.1E-23 137.2 8.3 83 99-181 36-118 (118)
94 2dng_A Eukaryotic translation 99.7 5.2E-18 1.8E-22 131.9 9.7 83 100-184 12-94 (103)
95 3r27_A HnRNP L, heterogeneous 99.7 6.1E-18 2.1E-22 127.8 9.7 77 279-359 20-98 (100)
96 3ucg_A Polyadenylate-binding p 99.7 3.8E-18 1.3E-22 128.9 8.7 80 103-183 6-85 (89)
97 2cpe_A RNA-binding protein EWS 99.7 4E-18 1.4E-22 135.0 9.2 85 100-184 12-104 (113)
98 1x5t_A Splicing factor 3B subu 99.7 6.4E-18 2.2E-22 129.6 10.0 82 280-361 5-89 (96)
99 2do4_A Squamous cell carcinoma 99.7 9.4E-18 3.2E-22 129.7 11.0 82 279-360 16-98 (100)
100 1x5u_A Splicing factor 3B subu 99.7 1.2E-17 4E-22 130.4 11.6 83 279-361 14-98 (105)
101 1oo0_B CG8781-PA, drosophila Y 99.7 3.6E-18 1.2E-22 134.5 8.7 85 99-183 22-106 (110)
102 2fy1_A RNA-binding motif prote 99.7 7.9E-18 2.7E-22 133.5 10.6 81 280-360 7-88 (116)
103 3r27_A HnRNP L, heterogeneous 99.7 5.6E-18 1.9E-22 128.0 9.2 79 99-183 17-97 (100)
104 2dnm_A SRP46 splicing factor; 99.7 8.6E-18 2.9E-22 130.7 10.6 83 279-361 12-96 (103)
105 2hvz_A Splicing factor, argini 99.7 3.6E-18 1.2E-22 132.3 8.4 84 104-192 1-100 (101)
106 3ulh_A THO complex subunit 4; 99.7 7E-18 2.4E-22 132.2 10.1 83 98-181 24-106 (107)
107 2wbr_A GW182, gawky, LD47780P; 99.7 7.8E-18 2.7E-22 122.0 9.3 73 280-356 7-79 (89)
108 2mss_A Protein (musashi1); RNA 99.7 3E-18 1E-22 124.8 7.3 75 105-180 1-75 (75)
109 1p1t_A Cleavage stimulation fa 99.7 5.4E-18 1.8E-22 132.2 9.2 83 102-184 7-89 (104)
110 3md1_A Nuclear and cytoplasmic 99.7 1E-17 3.5E-22 124.7 10.3 79 281-359 2-82 (83)
111 2ek1_A RNA-binding protein 12; 99.7 2.5E-18 8.7E-23 131.6 7.1 81 101-181 13-93 (95)
112 2d9p_A Polyadenylate-binding p 99.7 5.8E-18 2E-22 131.7 9.2 83 279-362 14-97 (103)
113 2dh8_A DAZ-associated protein 99.7 3.9E-18 1.3E-22 133.1 8.2 85 99-184 12-96 (105)
114 3n9u_C Cleavage and polyadenyl 99.7 5.2E-18 1.8E-22 141.6 9.4 81 102-182 54-136 (156)
115 2cph_A RNA binding motif prote 99.7 1.9E-17 6.4E-22 129.8 12.1 84 278-361 13-100 (107)
116 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.4E-18 1.5E-22 131.3 8.3 83 99-183 15-98 (100)
117 1u6f_A Tcubp1, RNA-binding pro 99.7 1.6E-17 5.6E-22 136.8 12.3 84 278-361 40-125 (139)
118 3bs9_A Nucleolysin TIA-1 isofo 99.7 9E-18 3.1E-22 126.2 9.8 80 279-358 5-86 (87)
119 2x1f_A MRNA 3'-END-processing 99.7 1.8E-17 6.3E-22 126.9 11.6 81 280-360 2-84 (96)
120 3ex7_B RNA-binding protein 8A; 99.7 6.2E-18 2.1E-22 136.8 9.4 86 98-183 17-102 (126)
121 1x5s_A Cold-inducible RNA-bind 99.7 6.6E-18 2.3E-22 131.1 9.1 83 279-361 11-95 (102)
122 1wez_A HnRNP H', FTP-3, hetero 99.7 6.6E-18 2.2E-22 130.4 9.0 81 99-182 11-91 (102)
123 2dnh_A Bruno-like 5, RNA bindi 99.7 1E-17 3.5E-22 130.8 10.2 84 279-362 14-101 (105)
124 1x4h_A RNA-binding protein 28; 99.7 2.6E-17 8.8E-22 129.9 12.6 84 279-362 14-105 (111)
125 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.8E-18 1.7E-22 144.1 8.9 131 232-362 11-156 (165)
126 2cpf_A RNA binding motif prote 99.7 9.8E-18 3.4E-22 129.1 9.9 82 280-361 5-91 (98)
127 2cqp_A RNA-binding protein 12; 99.7 3.8E-18 1.3E-22 131.4 7.5 84 100-183 12-95 (98)
128 2cq0_A Eukaryotic translation 99.7 8.3E-18 2.8E-22 130.7 9.5 83 279-361 14-98 (103)
129 1u6f_A Tcubp1, RNA-binding pro 99.7 8.2E-18 2.8E-22 138.6 9.9 86 99-184 38-123 (139)
130 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.9E-18 9.8E-23 125.7 6.4 76 104-180 1-76 (77)
131 2cpz_A CUG triplet repeat RNA- 99.7 1E-17 3.5E-22 133.1 10.1 84 279-362 24-109 (115)
132 1wi8_A EIF-4B, eukaryotic tran 99.7 6E-18 2.1E-22 131.7 8.6 82 101-184 13-95 (104)
133 2cqd_A RNA-binding region cont 99.7 6.1E-18 2.1E-22 134.6 8.8 83 100-183 14-96 (116)
134 1x4d_A Matrin 3; structural ge 99.7 5.2E-18 1.8E-22 129.7 8.0 78 279-360 14-94 (102)
135 1wi8_A EIF-4B, eukaryotic tran 99.7 1.9E-17 6.6E-22 128.9 11.4 81 279-361 14-97 (104)
136 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-17 3.9E-22 140.5 10.8 85 99-183 35-119 (156)
137 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.5E-17 5.1E-22 124.4 10.3 78 279-356 6-85 (85)
138 1x4d_A Matrin 3; structural ge 99.7 3.7E-18 1.3E-22 130.6 7.0 80 101-186 13-95 (102)
139 4a8x_A RNA-binding protein wit 99.7 5.4E-18 1.9E-22 127.8 7.9 82 102-183 3-85 (88)
140 2cq3_A RNA-binding protein 9; 99.7 1.7E-17 6E-22 128.9 11.0 84 99-184 11-94 (103)
141 2dhg_A TRNA selenocysteine ass 99.7 8.2E-18 2.8E-22 131.1 9.0 84 279-362 8-94 (104)
142 1x4c_A Splicing factor, argini 99.7 3.8E-17 1.3E-21 128.0 12.9 77 280-361 15-96 (108)
143 3ex7_B RNA-binding protein 8A; 99.7 1E-17 3.5E-22 135.5 9.8 83 279-361 21-105 (126)
144 2cq1_A PTB-like protein L; RRM 99.7 2E-17 7E-22 126.7 10.8 80 279-362 14-95 (101)
145 2do0_A HnRNP M, heterogeneous 99.7 2E-17 6.8E-22 131.2 11.0 82 100-182 12-93 (114)
146 1x4a_A Splicing factor, argini 99.7 2.9E-17 1E-21 129.0 11.9 81 279-360 21-101 (109)
147 2jrs_A RNA-binding protein 39; 99.7 1E-17 3.5E-22 130.9 9.1 82 278-359 24-107 (108)
148 2ywk_A Putative RNA-binding pr 99.7 1.5E-17 5.1E-22 127.3 9.7 79 279-357 15-94 (95)
149 2ad9_A Polypyrimidine tract-bi 99.7 1.6E-17 5.5E-22 130.3 9.9 80 99-184 27-108 (119)
150 2m2b_A RNA-binding protein 10; 99.7 4E-18 1.4E-22 138.6 6.7 83 101-184 21-109 (131)
151 2cpj_A Non-POU domain-containi 99.7 1.5E-17 5.2E-22 128.2 9.7 86 99-190 11-96 (99)
152 1x4f_A Matrin 3; structural ge 99.7 6.8E-18 2.3E-22 130.9 7.6 84 100-189 22-108 (112)
153 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.4E-17 4.9E-22 129.4 9.5 83 99-183 11-93 (103)
154 1wg5_A Heterogeneous nuclear r 99.7 1.6E-17 5.6E-22 129.1 9.7 82 100-183 12-94 (104)
155 2e5h_A Zinc finger CCHC-type a 99.7 2.9E-17 1E-21 125.3 10.9 78 279-356 15-94 (94)
156 2rs2_A Musashi-1, RNA-binding 99.7 7.4E-18 2.5E-22 132.1 7.6 85 98-183 20-104 (109)
157 2cqc_A Arginine/serine-rich sp 99.7 2.7E-17 9.2E-22 125.9 10.5 79 279-357 14-94 (95)
158 1x4a_A Splicing factor, argini 99.7 2E-17 7E-22 129.9 10.0 83 99-184 18-100 (109)
159 2kt5_A RNA and export factor-b 99.7 2.3E-17 7.8E-22 132.9 10.5 85 99-184 31-115 (124)
160 2dgw_A Probable RNA-binding pr 99.7 1.8E-17 6.2E-22 125.6 9.3 82 99-183 6-87 (91)
161 2cpi_A CCR4-NOT transcription 99.7 1.1E-17 3.8E-22 131.7 8.4 88 100-187 12-105 (111)
162 2dgx_A KIAA0430 protein; RRM d 99.7 1.1E-17 3.9E-22 127.9 8.1 81 101-184 7-91 (96)
163 1wex_A Hypothetical protein (r 99.7 2.3E-17 7.7E-22 127.3 9.8 79 279-361 14-94 (104)
164 2hgl_A HNRPF protein, heteroge 99.7 8.5E-18 2.9E-22 136.1 7.7 82 99-182 40-124 (136)
165 1s79_A Lupus LA protein; RRM, 99.7 1.3E-17 4.6E-22 128.6 8.5 77 280-357 11-88 (103)
166 1x5o_A RNA binding motif, sing 99.7 5.5E-17 1.9E-21 128.6 12.3 81 101-182 23-111 (114)
167 2cqg_A TDP-43, TAR DNA-binding 99.7 2.9E-17 1E-21 127.6 10.4 83 100-184 12-94 (103)
168 2err_A Ataxin-2-binding protei 99.7 1.1E-17 3.6E-22 131.3 7.9 82 278-359 27-108 (109)
169 4a8x_A RNA-binding protein wit 99.7 2.8E-17 9.7E-22 123.8 10.0 80 280-359 4-86 (88)
170 2ki2_A SS-DNA binding protein 99.7 3.4E-18 1.2E-22 129.4 4.8 80 104-184 2-81 (90)
171 2cpe_A RNA-binding protein EWS 99.7 3E-17 1E-21 129.9 10.4 83 279-361 14-106 (113)
172 1oo0_B CG8781-PA, drosophila Y 99.7 3.8E-17 1.3E-21 128.7 10.9 82 279-360 25-108 (110)
173 2dnq_A RNA-binding protein 4B; 99.7 4E-17 1.4E-21 123.4 10.5 77 279-361 7-83 (90)
174 2dgp_A Bruno-like 4, RNA bindi 99.7 2.7E-17 9.3E-22 128.6 9.9 83 279-361 12-99 (106)
175 2dis_A Unnamed protein product 99.7 1.7E-17 5.9E-22 130.5 8.7 85 100-184 5-93 (109)
176 2dgv_A HnRNP M, heterogeneous 99.7 1.9E-17 6.6E-22 125.8 8.7 82 279-360 7-88 (92)
177 3ns6_A Eukaryotic translation 99.7 7.8E-18 2.7E-22 129.8 6.6 79 280-358 6-93 (100)
178 1x4b_A Heterogeneous nuclear r 99.7 3.7E-17 1.3E-21 130.0 10.6 84 277-361 24-109 (116)
179 2lea_A Serine/arginine-rich sp 99.7 6.8E-18 2.3E-22 137.6 6.3 84 100-183 44-127 (135)
180 2cq1_A PTB-like protein L; RRM 99.7 3.3E-17 1.1E-21 125.5 9.8 78 100-183 12-91 (101)
181 2krb_A Eukaryotic translation 99.7 1E-17 3.4E-22 123.9 6.7 74 103-178 1-81 (81)
182 1wex_A Hypothetical protein (r 99.7 3.6E-17 1.2E-21 126.1 10.0 79 100-184 12-92 (104)
183 2ad9_A Polypyrimidine tract-bi 99.7 1.9E-17 6.3E-22 129.9 8.4 80 279-362 30-111 (119)
184 2rs2_A Musashi-1, RNA-binding 99.7 7E-17 2.4E-21 126.5 11.7 84 277-361 22-107 (109)
185 2a3j_A U1 small nuclear ribonu 99.7 3.3E-17 1.1E-21 131.1 9.9 83 100-185 26-112 (127)
186 2nlw_A Eukaryotic translation 99.7 1.5E-17 5E-22 129.6 7.6 81 101-183 13-100 (105)
187 2dng_A Eukaryotic translation 99.7 4.3E-17 1.5E-21 126.6 10.2 81 279-361 14-96 (103)
188 2cpi_A CCR4-NOT transcription 99.7 2.5E-17 8.7E-22 129.6 9.0 80 280-359 15-102 (111)
189 2db1_A Heterogeneous nuclear r 99.7 1.2E-17 4.1E-22 132.8 7.1 80 100-181 14-96 (118)
190 2cq4_A RNA binding motif prote 99.7 1.1E-17 3.8E-22 132.6 6.8 79 103-182 25-103 (114)
191 2dgt_A RNA-binding protein 30; 99.7 8.6E-17 2.9E-21 122.1 11.4 77 279-361 9-85 (92)
192 3ulh_A THO complex subunit 4; 99.7 4.4E-17 1.5E-21 127.6 10.0 78 279-356 28-106 (107)
193 1wel_A RNA-binding protein 12; 99.7 1.1E-17 3.7E-22 134.7 6.5 82 100-182 22-103 (124)
194 2dh8_A DAZ-associated protein 99.7 3.2E-17 1.1E-21 127.9 9.0 82 279-361 15-98 (105)
195 2fc9_A NCL protein; structure 99.7 7.4E-17 2.5E-21 124.8 10.9 79 279-360 14-93 (101)
196 1p27_B RNA-binding protein 8A; 99.7 3E-17 1E-21 128.3 8.7 81 279-359 22-104 (106)
197 1x4b_A Heterogeneous nuclear r 99.7 1.9E-17 6.6E-22 131.7 7.7 81 103-184 27-107 (116)
198 2dnq_A RNA-binding protein 4B; 99.7 6.9E-17 2.3E-21 122.1 10.4 78 99-184 4-81 (90)
199 2cq4_A RNA binding motif prote 99.7 2.4E-17 8.2E-22 130.7 8.2 82 278-360 23-106 (114)
200 2cpy_A RNA-binding protein 12; 99.7 9.8E-18 3.3E-22 132.7 5.8 81 100-182 12-93 (114)
201 1x4g_A Nucleolysin TIAR; struc 99.7 9E-17 3.1E-21 126.2 11.2 80 279-362 24-103 (109)
202 2jwn_A Embryonic polyadenylate 99.7 2.7E-17 9.4E-22 132.5 8.4 80 103-183 36-115 (124)
203 2lmi_A GRSF-1, G-rich sequence 99.7 1.7E-17 5.9E-22 129.6 6.9 82 99-182 7-91 (107)
204 3p5t_L Cleavage and polyadenyl 99.7 6.7E-18 2.3E-22 127.6 4.3 80 281-360 2-85 (90)
205 2err_A Ataxin-2-binding protei 99.7 2.9E-17 9.9E-22 128.8 8.0 84 98-183 24-107 (109)
206 2jvr_A Nucleolar protein 3; RN 99.7 5.4E-17 1.9E-21 126.4 9.4 77 280-358 28-105 (111)
207 3ucg_A Polyadenylate-binding p 99.7 7.6E-17 2.6E-21 121.7 9.9 78 280-358 6-85 (89)
208 2dnp_A RNA-binding protein 14; 99.7 1.2E-16 4E-21 120.8 10.9 76 279-360 8-83 (90)
209 1why_A Hypothetical protein ri 99.7 8.5E-17 2.9E-21 123.4 10.2 77 280-360 17-95 (97)
210 2dnn_A RNA-binding protein 12; 99.7 2.8E-17 9.7E-22 127.8 7.5 77 103-182 16-92 (109)
211 1why_A Hypothetical protein ri 99.7 8.1E-17 2.8E-21 123.6 10.1 80 99-184 13-94 (97)
212 2cpd_A Apobec-1 stimulating pr 99.7 2.2E-16 7.4E-21 121.7 12.4 77 278-360 13-91 (99)
213 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.6E-17 1.2E-21 135.0 8.6 81 100-180 60-140 (140)
214 2la4_A Nuclear and cytoplasmic 99.7 5.5E-17 1.9E-21 125.6 9.1 80 97-182 21-100 (101)
215 2hvz_A Splicing factor, argini 99.7 4.1E-17 1.4E-21 126.3 8.3 78 281-361 1-78 (101)
216 1wg5_A Heterogeneous nuclear r 99.7 7.4E-17 2.5E-21 125.3 9.7 81 279-360 14-96 (104)
217 1iqt_A AUF1, heterogeneous nuc 99.7 1.3E-17 4.6E-22 121.4 5.1 75 105-180 1-75 (75)
218 2dgw_A Probable RNA-binding pr 99.7 7.8E-17 2.7E-21 122.1 9.6 79 280-360 10-89 (91)
219 2i2y_A Fusion protein consists 99.7 1.4E-16 4.8E-21 132.9 12.0 117 142-268 10-149 (150)
220 2kxn_B Transformer-2 protein h 99.7 4E-17 1.4E-21 131.8 8.2 81 279-359 45-127 (129)
221 2cqg_A TDP-43, TAR DNA-binding 99.7 1.8E-16 6.3E-21 123.1 11.6 82 279-362 14-97 (103)
222 2div_A TRNA selenocysteine ass 99.7 5.2E-17 1.8E-21 125.3 8.3 82 279-360 8-96 (99)
223 2hgn_A Heterogeneous nuclear r 99.7 1.1E-17 3.8E-22 135.9 4.7 81 278-360 44-125 (139)
224 1wg1_A KIAA1579 protein, homol 99.7 5E-17 1.7E-21 122.2 7.8 84 101-191 3-86 (88)
225 2fc8_A NCL protein; structure 99.7 1E-16 3.6E-21 124.3 9.8 83 99-184 11-93 (102)
226 2diu_A KIAA0430 protein; struc 99.7 1.8E-16 6E-21 115.9 10.2 79 101-189 7-90 (96)
227 2nlw_A Eukaryotic translation 99.7 9.8E-17 3.3E-21 124.9 9.5 79 280-359 15-101 (105)
228 1wez_A HnRNP H', FTP-3, hetero 99.7 3.4E-17 1.2E-21 126.4 6.8 78 280-359 15-93 (102)
229 2khc_A Testis-specific RNP-typ 99.7 8.3E-17 2.9E-21 128.4 9.3 79 278-356 38-118 (118)
230 2jvo_A Nucleolar protein 3; nu 99.7 7.8E-17 2.7E-21 125.8 8.8 78 277-360 28-105 (108)
231 2fc9_A NCL protein; structure 99.7 6.9E-17 2.4E-21 125.0 8.4 82 99-184 11-92 (101)
232 2dnn_A RNA-binding protein 12; 99.7 9.7E-17 3.3E-21 124.8 9.2 78 280-359 16-94 (109)
233 2jvr_A Nucleolar protein 3; RN 99.7 2.8E-17 9.7E-22 128.0 6.2 80 99-182 24-104 (111)
234 2dis_A Unnamed protein product 99.7 2.3E-16 7.9E-21 123.9 11.5 82 280-361 8-95 (109)
235 2xnq_A Nuclear polyadenylated 99.7 2E-16 6.9E-21 121.0 10.8 77 277-359 19-96 (97)
236 1x4c_A Splicing factor, argini 99.7 8.4E-17 2.9E-21 126.0 8.9 78 100-184 12-94 (108)
237 2cpy_A RNA-binding protein 12; 99.7 4.5E-17 1.5E-21 128.9 7.4 80 279-359 14-95 (114)
238 2la6_A RNA-binding protein FUS 99.7 6.6E-17 2.3E-21 124.6 8.0 78 279-356 12-99 (99)
239 3s7r_A Heterogeneous nuclear r 99.7 1.6E-16 5.4E-21 119.3 9.9 76 279-355 10-87 (87)
240 1wf1_A RNA-binding protein RAL 99.7 2E-16 6.9E-21 124.4 10.9 76 279-360 26-102 (110)
241 1fj7_A Nucleolin RBD1, protein 99.7 9.7E-18 3.3E-22 129.8 3.3 82 100-183 14-95 (101)
242 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4E-17 1.4E-21 125.9 6.7 81 277-359 16-99 (100)
243 2dha_A FLJ20171 protein; RRM d 99.7 3.9E-17 1.3E-21 129.8 6.7 79 101-181 21-103 (123)
244 3n9u_C Cleavage and polyadenyl 99.7 9.9E-17 3.4E-21 133.8 9.5 79 280-358 55-137 (156)
245 1x4g_A Nucleolysin TIAR; struc 99.7 6.8E-17 2.3E-21 126.9 8.0 81 99-185 21-101 (109)
246 2cpj_A Non-POU domain-containi 99.7 8.7E-17 3E-21 123.9 8.4 78 279-360 14-91 (99)
247 2kt5_A RNA and export factor-b 99.7 2E-16 6.9E-21 127.3 10.9 83 278-360 33-116 (124)
248 1x4f_A Matrin 3; structural ge 99.7 4.7E-17 1.6E-21 126.1 6.8 79 279-361 24-105 (112)
249 2hgn_A Heterogeneous nuclear r 99.7 2.5E-17 8.6E-22 133.8 5.5 81 100-183 43-123 (139)
250 2cpx_A Hypothetical protein FL 99.7 1.6E-17 5.4E-22 132.1 4.2 85 100-184 22-106 (115)
251 2m2b_A RNA-binding protein 10; 99.7 4.9E-17 1.7E-21 132.1 7.1 82 278-360 21-110 (131)
252 2f3j_A RNA and export factor b 99.7 1E-16 3.4E-21 136.9 9.2 86 99-185 84-169 (177)
253 2a3j_A U1 small nuclear ribonu 99.7 1.5E-16 5.2E-21 127.2 9.6 80 280-360 29-112 (127)
254 2xnq_A Nuclear polyadenylated 99.7 1.8E-16 6.2E-21 121.3 9.6 79 97-183 16-95 (97)
255 2ytc_A PRE-mRNA-splicing facto 99.7 1.1E-16 3.9E-21 119.5 8.3 77 99-181 8-85 (85)
256 2mss_A Protein (musashi1); RNA 99.7 5.7E-17 1.9E-21 118.0 6.5 73 282-355 1-75 (75)
257 2e5j_A Methenyltetrahydrofolat 99.7 1.4E-16 4.9E-21 122.1 9.0 80 100-184 16-95 (97)
258 2jwn_A Embryonic polyadenylate 99.7 2.5E-16 8.5E-21 126.9 10.8 84 276-360 32-117 (124)
259 1p1t_A Cleavage stimulation fa 99.7 6E-17 2.1E-21 126.2 6.9 83 279-361 7-91 (104)
260 2hgm_A HNRPF protein, heteroge 99.7 7.4E-17 2.5E-21 128.3 7.4 79 100-181 39-119 (126)
261 1whx_A Hypothetical protein ri 99.7 1.4E-16 4.8E-21 125.1 8.8 76 280-359 10-85 (111)
262 2jvo_A Nucleolar protein 3; nu 99.7 1.9E-16 6.4E-21 123.7 9.3 79 98-184 26-104 (108)
263 2ytc_A PRE-mRNA-splicing facto 99.7 1.7E-16 5.9E-21 118.5 8.7 74 279-356 11-85 (85)
264 1nu4_A U1A RNA binding domain; 99.7 6.3E-17 2.2E-21 124.3 6.4 84 99-185 4-91 (97)
265 2kvi_A Nuclear polyadenylated 99.7 1.6E-16 5.6E-21 121.5 8.6 77 99-183 6-83 (96)
266 2db1_A Heterogeneous nuclear r 99.7 1.7E-17 5.8E-22 132.0 3.1 79 280-359 17-99 (118)
267 2krb_A Eukaryotic translation 99.7 6.8E-17 2.3E-21 119.4 6.1 72 281-352 2-80 (81)
268 2cq2_A Hypothetical protein LO 99.7 3.6E-16 1.2E-20 121.2 10.3 78 280-361 25-109 (114)
269 2lcw_A RNA-binding protein FUS 99.5 5.3E-18 1.8E-22 134.9 0.0 84 101-184 5-96 (116)
270 2dgt_A RNA-binding protein 30; 99.7 2.1E-16 7E-21 120.0 8.6 78 99-184 6-83 (92)
271 2kvi_A Nuclear polyadenylated 99.7 1E-16 3.4E-21 122.7 6.9 78 278-361 8-86 (96)
272 2la4_A Nuclear and cytoplasmic 99.7 1.2E-16 4.1E-21 123.7 7.3 75 280-358 27-101 (101)
273 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.9E-16 2.7E-20 126.9 12.5 79 277-355 60-140 (140)
274 2ek1_A RNA-binding protein 12; 99.7 5.1E-17 1.7E-21 124.3 4.8 78 280-357 15-94 (95)
275 2dnp_A RNA-binding protein 14; 99.7 2.3E-16 7.9E-21 119.2 8.4 77 99-183 5-81 (90)
276 2cqp_A RNA-binding protein 12; 99.7 6.1E-17 2.1E-21 124.6 5.2 79 280-358 15-95 (98)
277 1whx_A Hypothetical protein ri 99.7 1.8E-16 6.1E-21 124.5 7.9 75 102-182 9-83 (111)
278 3beg_B Splicing factor, argini 99.7 2.7E-16 9.2E-21 124.5 8.9 76 280-360 16-96 (115)
279 2hgl_A HNRPF protein, heteroge 99.7 5.9E-17 2E-21 131.2 5.1 79 280-359 44-126 (136)
280 1uaw_A Mouse-musashi-1; RNP-ty 99.7 9.2E-17 3.2E-21 117.6 5.7 74 281-355 1-76 (77)
281 1nu4_A U1A RNA binding domain; 99.7 2.7E-16 9.1E-21 120.7 8.5 80 279-360 7-91 (97)
282 1sjr_A Polypyrimidine tract-bi 99.7 5.8E-16 2E-20 127.6 11.0 79 280-360 46-126 (164)
283 1x4e_A RNA binding motif, sing 99.7 3.5E-17 1.2E-21 122.3 3.2 77 280-356 5-83 (85)
284 1x5o_A RNA binding motif, sing 99.6 2.7E-16 9.4E-21 124.6 8.5 80 279-358 24-112 (114)
285 2cqh_A IGF-II mRNA-binding pro 99.6 1.7E-16 5.8E-21 120.8 6.8 77 280-361 8-86 (93)
286 3lqv_A PRE-mRNA branch site pr 99.6 3.8E-16 1.3E-20 124.0 9.1 80 280-360 8-87 (115)
287 2dgu_A Heterogeneous nuclear r 99.6 2.9E-16 1E-20 121.8 8.2 77 100-184 8-84 (103)
288 1x5p_A Negative elongation fac 99.6 1.5E-15 5.1E-20 116.4 11.9 77 279-361 14-90 (97)
289 2e5g_A U6 snRNA-specific termi 99.6 5.1E-16 1.7E-20 118.3 9.2 77 280-360 8-84 (94)
290 2ki2_A SS-DNA binding protein 99.6 5.9E-17 2E-21 122.5 3.9 79 281-360 2-82 (90)
291 2xs2_A Deleted in azoospermia- 99.6 6.8E-17 2.3E-21 125.3 4.4 79 102-183 8-86 (102)
292 2cpd_A Apobec-1 stimulating pr 99.6 5E-16 1.7E-20 119.6 9.2 77 100-184 12-90 (99)
293 2e5j_A Methenyltetrahydrofolat 99.6 2.5E-16 8.6E-21 120.7 7.4 79 279-360 18-96 (97)
294 1fjc_A Nucleolin RBD2, protein 99.6 1.2E-16 4.2E-21 122.4 5.6 79 101-184 14-92 (96)
295 2fc8_A NCL protein; structure 99.6 4.9E-16 1.7E-20 120.5 8.9 80 278-360 13-94 (102)
296 1fjc_A Nucleolin RBD2, protein 99.6 3E-16 1E-20 120.1 7.6 78 279-360 15-93 (96)
297 2j8a_A Histone-lysine N-methyl 99.6 1.4E-16 4.9E-21 123.3 5.6 79 104-182 3-95 (136)
298 2lcw_A RNA-binding protein FUS 99.4 1.4E-17 4.9E-22 132.4 0.0 83 279-361 6-98 (116)
299 2cpx_A Hypothetical protein FL 99.6 3.3E-16 1.1E-20 124.3 7.8 81 279-362 24-109 (115)
300 2e44_A Insulin-like growth fac 99.6 4E-16 1.4E-20 119.5 7.9 79 101-183 13-92 (96)
301 2e44_A Insulin-like growth fac 99.6 7.1E-16 2.4E-20 118.1 9.3 78 280-359 15-93 (96)
302 2e5g_A U6 snRNA-specific termi 99.6 8.7E-16 3E-20 117.0 9.2 77 101-183 6-82 (94)
303 2lmi_A GRSF-1, G-rich sequence 99.6 9.2E-17 3.2E-21 125.5 3.7 80 279-359 10-93 (107)
304 3zzy_A Polypyrimidine tract-bi 99.6 1.2E-15 4E-20 121.1 10.0 79 280-361 28-109 (130)
305 1iqt_A AUF1, heterogeneous nuc 99.6 2.4E-16 8.2E-21 114.7 5.6 73 282-355 1-75 (75)
306 2diu_A KIAA0430 protein; struc 99.6 1.5E-15 5E-20 111.1 9.6 75 280-362 8-88 (96)
307 2dha_A FLJ20171 protein; RRM d 99.6 1.6E-16 5.6E-21 126.2 4.8 79 280-359 23-106 (123)
308 1wf1_A RNA-binding protein RAL 99.6 6.4E-16 2.2E-20 121.5 8.1 74 101-182 25-99 (110)
309 3egn_A RNA-binding protein 40; 99.6 7.2E-16 2.5E-20 127.4 8.8 83 98-183 40-130 (143)
310 2e5i_A Heterogeneous nuclear r 99.6 2.3E-15 7.9E-20 119.1 11.2 76 281-360 26-104 (124)
311 2dnl_A Cytoplasmic polyadenyla 99.6 9.1E-16 3.1E-20 121.3 8.9 78 101-181 6-86 (114)
312 1sjr_A Polypyrimidine tract-bi 99.6 1.6E-15 5.3E-20 125.1 10.5 79 102-184 45-125 (164)
313 3d2w_A TAR DNA-binding protein 99.6 1.3E-15 4.5E-20 114.3 9.3 75 279-360 10-86 (89)
314 2cqh_A IGF-II mRNA-binding pro 99.6 3.2E-16 1.1E-20 119.2 6.0 78 100-184 5-84 (93)
315 2hgm_A HNRPF protein, heteroge 99.6 4.5E-16 1.5E-20 123.8 6.7 77 280-358 42-121 (126)
316 3beg_B Splicing factor, argini 99.6 8.4E-16 2.9E-20 121.6 8.0 69 101-176 14-82 (115)
317 3zzy_A Polypyrimidine tract-bi 99.6 1.6E-15 5.4E-20 120.3 9.4 78 102-184 27-107 (130)
318 3md3_A Nuclear and cytoplasmic 99.6 2E-15 7E-20 128.4 10.8 83 99-181 83-165 (166)
319 1fj7_A Nucleolin RBD1, protein 99.6 1.1E-16 3.6E-21 123.9 2.5 80 280-361 17-98 (101)
320 2xs2_A Deleted in azoospermia- 99.6 7.1E-16 2.4E-20 119.5 7.0 81 279-361 8-89 (102)
321 2cq2_A Hypothetical protein LO 99.6 6.9E-16 2.3E-20 119.6 6.8 79 97-181 19-104 (114)
322 2f3j_A RNA and export factor b 99.6 1.1E-15 3.9E-20 130.3 8.7 82 278-359 86-168 (177)
323 2pe8_A Splicing factor 45; RRM 99.6 2.5E-15 8.6E-20 116.0 9.8 83 100-182 5-93 (105)
324 1x5p_A Negative elongation fac 99.6 1.9E-15 6.4E-20 115.8 9.0 77 100-184 12-88 (97)
325 3pgw_S U1-70K; protein-RNA com 99.6 1E-15 3.5E-20 149.4 9.5 83 101-183 100-182 (437)
326 1wel_A RNA-binding protein 12; 99.6 2.7E-16 9.2E-21 126.5 3.9 80 279-359 24-105 (124)
327 1wf0_A TDP-43, TAR DNA-binding 99.6 1.4E-15 4.6E-20 114.4 7.2 77 280-361 5-81 (88)
328 2qfj_A FBP-interacting repress 99.6 4.2E-15 1.4E-19 132.3 11.7 83 101-183 123-205 (216)
329 2voo_A Lupus LA protein; RNA-b 99.6 1.4E-14 4.6E-19 125.6 13.8 123 237-360 64-189 (193)
330 2g4b_A Splicing factor U2AF 65 99.6 2.9E-15 9.9E-20 128.3 9.5 81 101-181 92-172 (172)
331 2e5i_A Heterogeneous nuclear r 99.6 8.2E-15 2.8E-19 115.9 11.2 74 105-184 27-103 (124)
332 3pgw_A U1-A; protein-RNA compl 99.6 3E-14 1E-18 132.3 17.1 79 279-359 8-91 (282)
333 1wg1_A KIAA1579 protein, homol 99.6 1.8E-15 6.2E-20 113.6 6.9 75 280-359 5-79 (88)
334 3d2w_A TAR DNA-binding protein 99.6 2.8E-15 9.5E-20 112.5 7.4 76 99-183 7-84 (89)
335 2hzc_A Splicing factor U2AF 65 99.6 6.6E-15 2.3E-19 110.4 9.2 71 279-354 5-86 (87)
336 3egn_A RNA-binding protein 40; 99.6 6.4E-16 2.2E-20 127.8 3.9 79 280-360 45-132 (143)
337 1b7f_A Protein (SXL-lethal pro 99.6 1.3E-14 4.4E-19 123.7 12.0 80 101-180 87-168 (168)
338 2cjk_A Nuclear polyadenylated 99.6 2.3E-15 7.8E-20 128.2 7.1 80 103-183 87-166 (167)
339 2yh0_A Splicing factor U2AF 65 99.6 5.3E-15 1.8E-19 129.7 9.7 85 100-184 111-195 (198)
340 2hzc_A Splicing factor U2AF 65 99.6 2.7E-15 9.3E-20 112.5 6.2 71 102-179 5-86 (87)
341 3tyt_A Heterogeneous nuclear r 99.6 1.1E-14 3.7E-19 127.7 10.7 77 280-359 4-81 (205)
342 4f02_A Polyadenylate-binding p 99.6 9.6E-15 3.3E-19 129.4 10.5 81 279-359 14-96 (213)
343 2bz2_A Negative elongation fac 99.6 1E-14 3.6E-19 116.0 9.3 78 99-184 35-112 (121)
344 2j8a_A Histone-lysine N-methyl 99.6 5.7E-15 1.9E-19 114.4 7.3 77 281-357 3-95 (136)
345 1l3k_A Heterogeneous nuclear r 99.6 1E-14 3.5E-19 127.7 9.6 83 101-184 102-184 (196)
346 1fxl_A Paraneoplastic encephal 99.6 2.2E-14 7.6E-19 122.0 11.3 79 102-180 87-167 (167)
347 2pe8_A Splicing factor 45; RRM 99.5 2.2E-14 7.5E-19 110.7 10.0 79 279-357 7-93 (105)
348 3nmr_A Cugbp ELAV-like family 99.5 2.6E-14 8.7E-19 122.7 11.3 80 101-181 93-175 (175)
349 1wf0_A TDP-43, TAR DNA-binding 99.5 3E-15 1E-19 112.5 4.0 77 101-184 3-79 (88)
350 2voo_A Lupus LA protein; RNA-b 99.5 1.7E-14 5.9E-19 124.9 9.1 78 103-182 109-186 (193)
351 2bz2_A Negative elongation fac 99.5 1.2E-14 4.1E-19 115.7 7.4 77 279-361 38-114 (121)
352 2dnl_A Cytoplasmic polyadenyla 99.5 2.6E-14 8.9E-19 112.9 8.6 76 280-358 8-88 (114)
353 2dit_A HIV TAT specific factor 99.5 4.7E-14 1.6E-18 111.0 9.3 85 98-186 10-105 (112)
354 3u1l_A PRE-mRNA-splicing facto 99.5 2.4E-14 8.2E-19 126.4 8.4 80 99-184 130-230 (240)
355 3u1l_A PRE-mRNA-splicing facto 99.5 2.4E-14 8.3E-19 126.4 7.4 79 278-360 132-231 (240)
356 2dit_A HIV TAT specific factor 99.5 1.2E-13 4.1E-18 108.6 9.8 81 279-361 14-105 (112)
357 3v4m_A Splicing factor U2AF 65 99.5 1.4E-13 4.6E-18 106.3 9.7 78 280-357 5-96 (105)
358 3v4m_A Splicing factor U2AF 65 99.5 4.8E-14 1.6E-18 108.9 7.0 82 101-182 3-96 (105)
359 1fje_B Nucleolin RBD12, protei 99.5 4.5E-14 1.5E-18 121.2 7.6 78 101-183 97-174 (175)
360 2adc_A Polypyrimidine tract-bi 99.5 1.7E-13 5.8E-18 122.8 9.5 80 278-360 32-112 (229)
361 1jmt_A Splicing factor U2AF 35 99.5 4.3E-14 1.5E-18 109.0 4.7 71 285-355 20-103 (104)
362 3ue2_A Poly(U)-binding-splicin 99.4 1.5E-13 5.1E-18 108.1 7.7 81 101-181 18-107 (118)
363 1qm9_A Polypyrimidine tract-bi 99.4 2.2E-13 7.4E-18 119.4 7.5 78 280-360 3-81 (198)
364 1jmt_A Splicing factor U2AF 35 99.4 5.6E-14 1.9E-18 108.4 3.2 72 108-180 20-103 (104)
365 3sde_A Paraspeckle component 1 99.4 6.3E-13 2.2E-17 121.6 9.0 77 278-358 20-96 (261)
366 3ue2_A Poly(U)-binding-splicin 99.4 6E-13 2.1E-17 104.6 7.1 79 279-357 19-108 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.7E-12 9.2E-17 97.5 10.4 67 290-361 27-93 (100)
368 2d9o_A DNAJ (HSP40) homolog, s 99.3 8.1E-12 2.8E-16 94.9 10.2 75 103-184 10-91 (100)
369 3tht_A Alkylated DNA repair pr 99.3 5.7E-12 1.9E-16 117.5 9.8 74 279-356 17-97 (345)
370 3s6e_A RNA-binding protein 39; 99.3 7.6E-12 2.6E-16 97.5 8.9 78 279-358 6-93 (114)
371 3s6e_A RNA-binding protein 39; 99.3 7.5E-12 2.6E-16 97.6 7.8 78 100-181 4-91 (114)
372 3tht_A Alkylated DNA repair pr 99.3 7.1E-12 2.4E-16 116.9 8.3 80 96-181 11-97 (345)
373 1owx_A Lupus LA protein, SS-B, 99.2 8.1E-11 2.8E-15 91.6 8.6 75 278-356 16-94 (121)
374 1owx_A Lupus LA protein, SS-B, 99.2 1E-10 3.5E-15 91.0 9.1 76 99-180 14-93 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.1 1.5E-10 5.1E-15 83.9 8.4 71 281-358 8-86 (91)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 1.3E-10 4.6E-15 84.1 6.2 74 100-182 4-85 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.9 1E-09 3.5E-14 79.8 5.0 71 280-357 15-94 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 7.2E-10 2.5E-14 80.6 3.7 76 97-181 9-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.8 1.6E-08 5.4E-13 89.9 8.6 83 99-181 120-211 (222)
380 3dxb_A Thioredoxin N-terminall 98.7 1.7E-08 5.7E-13 89.7 6.1 66 292-357 141-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.7 6.2E-08 2.1E-12 71.7 7.9 71 280-354 21-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.5 6.6E-07 2.3E-11 66.3 7.9 72 102-179 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.3 5.8E-06 2E-10 60.9 9.7 87 101-196 6-99 (104)
384 1wey_A Calcipressin 1; structu 98.0 2.3E-05 7.8E-10 58.1 7.5 76 280-359 5-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.9 0.00019 6.5E-09 52.9 11.4 75 280-361 8-87 (104)
386 1uw4_A UPF3X; nonsense mediate 97.7 9.3E-05 3.2E-09 54.0 7.3 70 104-173 2-73 (91)
387 1wey_A Calcipressin 1; structu 97.6 6.7E-05 2.3E-09 55.6 4.3 74 103-182 5-83 (104)
388 1uw4_A UPF3X; nonsense mediate 97.4 0.00098 3.3E-08 48.6 8.6 76 281-356 2-86 (91)
389 1wwh_A Nucleoporin 35, nucleop 97.3 0.0013 4.3E-08 50.3 8.5 72 280-357 24-96 (119)
390 1wwh_A Nucleoporin 35, nucleop 97.1 0.001 3.5E-08 50.8 6.3 71 102-180 23-94 (119)
391 2l08_A Regulator of nonsense t 97.0 0.00054 1.8E-08 50.2 4.0 70 103-172 9-80 (97)
392 1whv_A Poly(A)-specific ribonu 97.0 0.002 7E-08 46.8 6.8 55 103-166 16-70 (100)
393 3ctr_A Poly(A)-specific ribonu 96.7 0.0031 1.1E-07 46.0 5.6 53 106-166 8-60 (101)
394 1whv_A Poly(A)-specific ribonu 96.6 0.0045 1.6E-07 45.0 6.0 54 281-341 17-70 (100)
395 2l08_A Regulator of nonsense t 96.6 0.008 2.7E-07 44.0 7.0 77 280-356 9-94 (97)
396 3ctr_A Poly(A)-specific ribonu 96.5 0.0026 8.9E-08 46.4 4.4 54 281-341 7-60 (101)
397 3p3d_A Nucleoporin 53; structu 95.7 0.015 5.1E-07 45.0 5.3 75 281-357 8-98 (132)
398 3pq1_A Poly(A) RNA polymerase; 95.6 0.006 2.1E-07 58.9 3.4 55 103-163 53-107 (464)
399 3p3d_A Nucleoporin 53; structu 95.4 0.0069 2.3E-07 46.9 2.3 77 103-181 7-97 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.1 0.0088 3E-07 57.7 2.6 56 280-339 53-108 (464)
401 4eyt_A Telomerase associated p 88.0 2.6 8.9E-05 29.6 7.2 73 279-357 11-90 (129)
402 3d45_A Poly(A)-specific ribonu 79.8 3.2 0.00011 40.9 6.7 56 280-342 440-495 (507)
403 3d45_A Poly(A)-specific ribonu 78.7 3.9 0.00014 40.2 7.0 55 104-167 441-495 (507)
404 2g0c_A ATP-dependent RNA helic 69.5 12 0.0004 25.7 5.8 59 291-356 12-75 (76)
405 4eyt_A Telomerase associated p 67.3 29 0.001 24.3 7.5 69 101-179 10-78 (129)
406 2g0c_A ATP-dependent RNA helic 66.0 20 0.0007 24.4 6.4 59 114-181 12-75 (76)
407 2pk2_A Cyclin-T1, protein TAT; 57.2 2.2 7.6E-05 39.9 0.0 13 291-303 228-240 (358)
408 3tj1_A RNA polymerase I-specif 56.8 1.3 4.4E-05 44.5 -1.8 8 155-162 415-422 (649)
409 3l9o_A ATP-dependent RNA helic 51.9 3 0.0001 45.5 -0.0 21 146-166 228-248 (1108)
410 3l9o_A ATP-dependent RNA helic 51.1 3.7 0.00013 44.8 0.5 9 321-329 588-596 (1108)
411 4e8u_A Putative uncharacterize 43.4 20 0.00069 29.1 3.6 50 281-331 13-73 (172)
412 3j21_T 50S ribosomal protein L 43.1 63 0.0022 22.8 5.7 56 283-339 25-82 (86)
413 4e8u_A Putative uncharacterize 38.3 63 0.0021 26.2 5.7 50 105-157 14-74 (172)
414 3fry_A Probable copper-exporti 38.0 76 0.0026 20.8 5.6 54 281-339 7-60 (73)
415 3iot_A Maltose-binding protein 36.0 8.3 0.00028 37.1 0.3 15 323-337 263-280 (449)
416 4fdd_B RNA-binding protein FUS 27.6 53 0.0018 17.5 2.3 8 472-479 22-29 (29)
417 2cu1_A Mitogen-activated prote 26.4 1.8E+02 0.0061 21.1 5.7 67 287-360 23-90 (103)
418 2z5n_B Heterogeneous nuclear r 24.8 49 0.0017 17.4 2.0 6 474-479 19-24 (26)
419 1vq8_S 50S ribosomal protein L 24.7 1.2E+02 0.004 21.4 4.5 54 283-337 24-79 (85)
420 2i9x_A Putative septation prot 23.6 1.1E+02 0.0038 21.6 4.2 25 129-153 5-29 (87)
421 2e5p_A Protein PHF1, PHD finge 23.3 67 0.0023 21.2 2.8 20 305-330 28-47 (68)
422 4a17_R RPL23A, 60S ribosomal p 22.2 1.4E+02 0.0049 23.4 5.0 54 284-338 90-145 (150)
423 4bby_A Alkyldihydroxyacetoneph 22.2 1E+02 0.0035 31.3 5.4 58 109-167 349-410 (658)
424 3u5e_X 60S ribosomal protein L 21.1 1.4E+02 0.0049 23.2 4.8 54 284-338 82-137 (142)
425 2f06_A Conserved hypothetical 21.0 2.8E+02 0.0096 21.1 11.1 50 293-345 85-135 (144)
426 3dxs_X Copper-transporting ATP 20.7 1.8E+02 0.0061 18.7 5.6 56 281-340 4-63 (74)
427 2ia9_A Putative septation prot 20.4 1.4E+02 0.0046 21.8 4.2 25 129-153 5-29 (100)
428 4a4j_A Pacszia, cation-transpo 20.2 1.7E+02 0.0059 18.4 5.2 55 281-339 4-61 (69)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.1e-45 Score=342.22 Aligned_cols=253 Identities=21% Similarity=0.332 Sum_probs=215.0
Q ss_pred ccCCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 96 LLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 96 ~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
........++|||+|||+++|+++|+++|+.||.|.+|+|+++..+ ++|||||+|.+.++|.+||+ +++..|.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 4445667899999999999999999999999999999999998752 58999999999999999995 89999999999
Q ss_pred eeeccCCCceeeccCCCCCcCHHHHHHHHHhhC-CceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCcccc
Q 011718 176 RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL 254 (479)
Q Consensus 176 ~v~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 254 (479)
.|.++. .++|||+|||+.+++++|+++|..|| . |..+.++.+.. ++++|||||.|.+.++|..|+..|+ +..+
T Consensus 111 ~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~--g~~~ 184 (292)
T 2ghp_A 111 IVSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLN--GLKI 184 (292)
T ss_dssp EEEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHT--TCEE
T ss_pred EEEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhC--CCEe
Confidence 999974 68999999999999999999999999 7 99999988743 7889999999999999999999999 5677
Q ss_pred CCCCceeeecCCCCCCCchhhhhhccceEEecCCCCC-CCHHHHHHHHhcCCCEEEEEccCCCC--CC-CceEEEEeCCh
Q 011718 255 DGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN-TTTKQLKELFQRHGEVTKVVTPPGKS--GK-RDFGFIHYAER 330 (479)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~v~~~~~~~--~~-~g~~fV~f~~~ 330 (479)
.++.|.|.++.+..............++|||+|||+. +|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 8999999999876654433233455689999999999 99999999999999999999999876 55 89999999999
Q ss_pred HHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 331 SSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 331 ~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
++|.+|+ .||++.|+|+.|.|.|+.++
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999 99999999999999999876
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2e-44 Score=337.29 Aligned_cols=245 Identities=20% Similarity=0.369 Sum_probs=225.9
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
..+++|||+|||+++|+++|+++|+.|| |..|++ ++++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3678999999999999999999999999 999988 466899999999999999999999999999999999999
Q ss_pred CCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCce
Q 011718 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260 (479)
Q Consensus 181 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 260 (479)
....+|||+|||+.+++++|+++|..||. |..+.++.+ ..+++++|||||.|.+.++|..|+..|+ +..+.++.|.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLL--GKPLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHT--TCEETTEECE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhC--CCEeCCcEEE
Confidence 99999999999999999999999999999 999999987 4568999999999999999999999999 4677899999
Q ss_pred eeecCCCCCCCchhhhhhccceEEecCCCCCC-CHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHH
Q 011718 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENT-TTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338 (479)
Q Consensus 261 v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~ 338 (479)
|.++.+..... .....++|||+|||+.+ |+++|+++|++||.|..|.|..+..+. +|||||+|.+.++|.+|+.
T Consensus 169 v~~a~~~~~~~----~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 244 (284)
T 3smz_A 169 VHWTDAGQLTP----ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQ 244 (284)
T ss_dssp EEECCGGGCCT----TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHH
T ss_pred EEECCCCCCCc----ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHH
Confidence 99998765332 12346899999999995 999999999999999999999988777 8999999999999999999
Q ss_pred hcCCceecCeEEEEEecCCCCC
Q 011718 339 DTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 339 ~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
.||+..|+|+.|.|.++.++..
T Consensus 245 ~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 245 QADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHTTCEETTEECEEEECCSSSC
T ss_pred HhCCCccCCeEEEEEEecCCCc
Confidence 9999999999999999988765
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.2e-35 Score=264.69 Aligned_cols=170 Identities=23% Similarity=0.425 Sum_probs=152.5
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
+.++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+||+.+++..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCcee
Q 011718 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261 (479)
Q Consensus 182 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 261 (479)
....
T Consensus 94 ~~~~---------------------------------------------------------------------------- 97 (213)
T 4f02_A 94 RDPS---------------------------------------------------------------------------- 97 (213)
T ss_dssp CCTH----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 2110
Q ss_pred eecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcC
Q 011718 262 SWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~ 341 (479)
.......+|||+|||+.+|+++|+++|++||.|..|+|+.+..+.+|||||+|.+.++|.+||..||
T Consensus 98 -------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 98 -------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp -------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred -------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhC
Confidence 0011136799999999999999999999999999999998876668999999999999999999999
Q ss_pred CceecCeEEEEEecCCCCC
Q 011718 342 KYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 342 ~~~~~g~~i~v~~a~~~~~ 360 (479)
++.|+|+.|+|.+|.++..
T Consensus 165 g~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 165 GMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp TCEETTEECEEEECCCHHH
T ss_pred CCEECCEEEEEEEcCCCcc
Confidence 9999999999999987643
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.3e-32 Score=242.69 Aligned_cols=178 Identities=23% Similarity=0.444 Sum_probs=148.3
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+||+. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445678999999999999999999999999999999999999999999999999999999999975 8899999999998
Q ss_pred ccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCC
Q 011718 179 MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT 258 (479)
Q Consensus 179 ~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~ 258 (479)
++...... ..
T Consensus 88 ~~~~~~~~-------------------------------------~~--------------------------------- 97 (196)
T 1l3k_A 88 RAVSREDS-------------------------------------QR--------------------------------- 97 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCcccc-------------------------------------cc---------------------------------
Confidence 87532110 00
Q ss_pred ceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHH
Q 011718 259 PTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKA 336 (479)
Q Consensus 259 ~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a 336 (479)
.......++|||+|||+.+|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|
T Consensus 98 ---------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 98 ---------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp --------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred ---------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 00011247899999999999999999999999999999998864 44 89999999999999999
Q ss_pred HHhcCCceecCeEEEEEecCCCCCCCC
Q 011718 337 IKDTEKYEIDGQVLEVALARPQTNKRT 363 (479)
Q Consensus 337 ~~~~~~~~~~g~~i~v~~a~~~~~~~~ 363 (479)
+.. +++.|+|+.|.|.++.++.....
T Consensus 163 ~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 163 VIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHC-SCCEETTEECEEEECC-------
T ss_pred HHh-CCcEECCEEEEEEecCChhHhcc
Confidence 986 79999999999999999876543
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.3e-32 Score=234.79 Aligned_cols=163 Identities=29% Similarity=0.492 Sum_probs=148.4
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
++++|||+|||+++|+++|+++|++||.|.+|++++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998889999999999999999999999999999999999998875
Q ss_pred CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCcee
Q 011718 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261 (479)
Q Consensus 182 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 261 (479)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3210
Q ss_pred eecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCC-CCC-CceEEEEeCChHHHHHHHHh
Q 011718 262 SWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK-SGK-RDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~-~~~-~g~~fV~f~~~~~a~~a~~~ 339 (479)
....++|||+|||..+++++|+++|++||.|..|.+..+. .+. +|||||+|.+.++|.+|+..
T Consensus 86 ---------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 86 ---------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 150 (168)
T ss_dssp ---------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred ---------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 0113689999999999999999999999999999999887 344 89999999999999999999
Q ss_pred cCCceecC--eEEEEEec
Q 011718 340 TEKYEIDG--QVLEVALA 355 (479)
Q Consensus 340 ~~~~~~~g--~~i~v~~a 355 (479)
||+..|.| ++|+|.||
T Consensus 151 l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 151 LNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HTTCCCTTCSSCCEEEEC
T ss_pred hcCCEecCCCeEEEEEeC
Confidence 99999988 99999986
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.2e-31 Score=240.17 Aligned_cols=178 Identities=22% Similarity=0.437 Sum_probs=150.6
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 56899999999999999999999999999999999988899999999999999999999999999999999999977653
Q ss_pred CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceee
Q 011718 183 NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS 262 (479)
Q Consensus 183 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 262 (479)
.... .. ....+
T Consensus 108 ~~~~---------------------------------------------------~~---~~~~~--------------- 118 (216)
T 2qfj_A 108 IGQA---------------------------------------------------QP---IIDQL--------------- 118 (216)
T ss_dssp CGGG---------------------------------------------------HH---HHHHH---------------
T ss_pred cccc---------------------------------------------------ch---hhhhh---------------
Confidence 2110 00 00000
Q ss_pred ecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhc
Q 011718 263 WAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDT 340 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~ 340 (479)
.......++|||+|||..+|+++|+++|++||.|..|.|..+.. +. +|||||+|.+.++|.+|+..|
T Consensus 119 -----------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 119 -----------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp -----------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred -----------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 00112257999999999999999999999999999999998864 44 899999999999999999999
Q ss_pred CCceecCeEEEEEecCCCCC
Q 011718 341 EKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 341 ~~~~~~g~~i~v~~a~~~~~ 360 (479)
|+..|+|+.|.|.++.++..
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSS
T ss_pred cCCEeCCcEEEEEEecCCCC
Confidence 99999999999999998754
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8.3e-32 Score=231.04 Aligned_cols=162 Identities=30% Similarity=0.505 Sum_probs=146.3
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
+++|||+|||+++|+++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998899999999999999999999999999999999999987653
Q ss_pred CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceee
Q 011718 183 NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS 262 (479)
Q Consensus 183 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 262 (479)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred ecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhc
Q 011718 263 WAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDT 340 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~ 340 (479)
....++|||+|||..+++++|+++|++||.|..+.+..+.. +. +|||||+|.+.++|.+|+..|
T Consensus 85 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 85 --------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp --------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Confidence 01136799999999999999999999999999999988764 44 899999999999999999999
Q ss_pred CCceecCeE--EEEEec
Q 011718 341 EKYEIDGQV--LEVALA 355 (479)
Q Consensus 341 ~~~~~~g~~--i~v~~a 355 (479)
|+..|.|+. |+|.||
T Consensus 151 ~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 151 NGQKPSGATEPITVKFA 167 (167)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCccCCCccceEEEeC
Confidence 999999965 888876
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-32 Score=231.34 Aligned_cols=164 Identities=19% Similarity=0.368 Sum_probs=146.4
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCCC
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN 183 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~~ 183 (479)
++|||+|||.++|+++|+++|++||.|.+|+|++++. ++++|||||+|.+.++|.+|+..|++..+.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999875 789999999999999999999999999999999999886532
Q ss_pred ceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeee
Q 011718 184 NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW 263 (479)
Q Consensus 184 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 263 (479)
.. .
T Consensus 80 ~~--------------------------------------~--------------------------------------- 82 (166)
T 3md3_A 80 QQ--------------------------------------S--------------------------------------- 82 (166)
T ss_dssp CC--------------------------------------C---------------------------------------
T ss_pred CC--------------------------------------C---------------------------------------
Confidence 10 0
Q ss_pred cCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcC
Q 011718 264 AEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTE 341 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~ 341 (479)
......+|||+|||..+|+++|+++|++||.|..+.+..+.. +. +|||||+|.+.++|.+|+..||
T Consensus 83 ------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 83 ------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp ------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred ------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 011246899999999999999999999999999999998854 44 8999999999999999999999
Q ss_pred CceecCeEEEEEecCC
Q 011718 342 KYEIDGQVLEVALARP 357 (479)
Q Consensus 342 ~~~~~g~~i~v~~a~~ 357 (479)
+..|+|+.|+|.||++
T Consensus 151 g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 151 GQDLNGRPLRINWAAK 166 (166)
T ss_dssp TCEETTEECEEEESCC
T ss_pred CCccCCcEEEEEecCC
Confidence 9999999999999864
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=2.6e-32 Score=234.12 Aligned_cols=163 Identities=23% Similarity=0.485 Sum_probs=144.9
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
++++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46799999999999999999999999999999999999899999999999999999999997 4567888888776653
Q ss_pred CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCcee
Q 011718 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261 (479)
Q Consensus 182 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 261 (479)
+..
T Consensus 80 ~~~----------------------------------------------------------------------------- 82 (167)
T 2cjk_A 80 PRD----------------------------------------------------------------------------- 82 (167)
T ss_dssp CHH-----------------------------------------------------------------------------
T ss_pred chh-----------------------------------------------------------------------------
Confidence 210
Q ss_pred eecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHh
Q 011718 262 SWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~ 339 (479)
......+|||+|||+.+|+++|+++|++||.|..|.+..+.. +. +|||||+|.+.++|.+|++
T Consensus 83 --------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~- 147 (167)
T 2cjk_A 83 --------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ- 147 (167)
T ss_dssp --------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-
T ss_pred --------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-
Confidence 011146899999999999999999999999999999998864 44 8999999999999999998
Q ss_pred cCCceecCeEEEEEecCCC
Q 011718 340 TEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 340 ~~~~~~~g~~i~v~~a~~~ 358 (479)
+++..|+|+.|+|.+|.++
T Consensus 148 ~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 148 NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CSEECSSSSCEEEEECCCC
T ss_pred CCCEEeCCeEEEEeecCCC
Confidence 8999999999999999886
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=3.6e-31 Score=228.93 Aligned_cols=165 Identities=24% Similarity=0.464 Sum_probs=142.6
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCC--CceeEEEEEecCHHHHHHHHHHhcCCCCC---CCeee
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAIDELCSKDFK---GKTIR 176 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g--~~~g~afV~F~~~e~a~~Al~~l~~~~~~---g~~l~ 176 (479)
.+++|||+|||+++|+++|+++|++||.|.+|+|++++.++ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998876 89999999999999999999999997765 34444
Q ss_pred eeccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCC
Q 011718 177 CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG 256 (479)
Q Consensus 177 v~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 256 (479)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 443321100
Q ss_pred CCceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHH
Q 011718 257 NTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALK 335 (479)
Q Consensus 257 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~ 335 (479)
. ....++|||+|||+.+|+++|+++|++||.|..|.+..+..+. +|||||+|.+.++|.+
T Consensus 91 -------------~------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~ 151 (175)
T 3nmr_A 91 -------------N------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQT 151 (175)
T ss_dssp -------------S------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHH
T ss_pred -------------c------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHH
Confidence 0 1124789999999999999999999999999999999988777 8999999999999999
Q ss_pred HHHhcCCceec---CeEEEEEecC
Q 011718 336 AIKDTEKYEID---GQVLEVALAR 356 (479)
Q Consensus 336 a~~~~~~~~~~---g~~i~v~~a~ 356 (479)
|+..||+..+. +++|.|.||.
T Consensus 152 A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 152 AIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHhcCCcccCCCCCCeEEEecC
Confidence 99999998776 4999999973
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1e-30 Score=229.97 Aligned_cols=196 Identities=19% Similarity=0.266 Sum_probs=144.1
Q ss_pred CCCCeEEECCCC-CCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 101 PHGSEVFIGGLP-KDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 101 ~~~~~l~V~nLp-~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
..+++|||+||| +.+|+++|+++|++||.|.+|+|+++ .+|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 89999999999999999999999865 379999999999999999999999999999999999
Q ss_pred cCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCc
Q 011718 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTP 259 (479)
Q Consensus 180 a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 259 (479)
++.... .|.... . . ..+ ...+-.|.... .+ .+ . ..
T Consensus 77 s~~~~~-----~p~~~~-----------~--~----------~~~---~~~~~~~~~~~--------~~--r~--~-~~- 111 (205)
T 3tyt_A 77 SKQPAI-----MPGQSY-----------G--L----------EDG---SCSYKDFSESR--------NN--RF--S-TP- 111 (205)
T ss_dssp CSCSCC-----CCCSCC-----------B--C----------TTS---CBSEEECTTCT--------TC--SC--S-SH-
T ss_pred ccCCcc-----CCCccc-----------c--c----------ccC---CccccccCCCc--------cc--cc--c-Cc-
Confidence 875432 010000 0 0 000 00000000000 00 00 0 00
Q ss_pred eeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCE--EEEEccCCCCCCCceEEEEeCChHHHHHHH
Q 011718 260 TVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAI 337 (479)
Q Consensus 260 ~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v--~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~ 337 (479)
... ... ....++++|||+|||+.+|+++|+++|++||.| ..|+++.+..+++|||||+|.+.++|.+||
T Consensus 112 --~~~-~~~------~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 112 --EQA-AKN------RIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp --HHH-TTS------CCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHH
T ss_pred --ccc-ccc------ccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHH
Confidence 000 000 001235789999999999999999999999999 899998887444799999999999999999
Q ss_pred HhcCCceecCe----EEEEEec
Q 011718 338 KDTEKYEIDGQ----VLEVALA 355 (479)
Q Consensus 338 ~~~~~~~~~g~----~i~v~~a 355 (479)
..||++.|.|+ ++.|.+|
T Consensus 183 ~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 183 GFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHTTCEECCSSSSSCEECEEE
T ss_pred HHhCCCCccCCCCCcceEEEec
Confidence 99999999986 6777765
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=8.1e-30 Score=237.89 Aligned_cols=250 Identities=18% Similarity=0.262 Sum_probs=152.6
Q ss_pred CCCCCCeEEECCCCCCCCHHHHH----HhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCe
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLR----DLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKT 174 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~ 174 (479)
...++++|||+|||+++|+++|+ ++|++||.|.+|+|++ +++++|||||+|.+.++|.+||+.||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34578899999999999999977 8999999999999886 5889999999999999999999999999999999
Q ss_pred eeeeccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeC----Chh-HHHHHHHHhhc
Q 011718 175 IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYY----NNA-CADYSRQKMTS 249 (479)
Q Consensus 175 l~v~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~----~~~-~a~~a~~~~~~ 249 (479)
|+|.++.............. .+......-..... ...................+.+.-. ... .+......+.+
T Consensus 82 l~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTF-VERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred EEEEEeccCcchhhhhcCCc-ccchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 99999976543222111110 00000000000000 0000000000000000000000000 000 00000000000
Q ss_pred CccccC--CC----Cc-eeeecC---------CCC-CCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEc
Q 011718 250 ANFKLD--GN----TP-TVSWAE---------PKS-TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT 312 (479)
Q Consensus 250 ~~~~~~--~~----~~-~v~~~~---------~~~-~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~ 312 (479)
..-... +. .. ...+.. +.. ...........+++|||+|||..+|+++|+++|++||.|..|+|
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~ 239 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence 000000 00 00 000000 000 00000012234688999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEEeCChHHHHHHHHhcCCceec-CeEEEEEecC
Q 011718 313 PPGKSGKRDFGFIHYAERSSALKAIKDTEKYEID-GQVLEVALAR 356 (479)
Q Consensus 313 ~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~-g~~i~v~~a~ 356 (479)
..++ +|||||+|.+.++|.+|+..||+..|. |+.|+|.|++
T Consensus 240 ~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 240 VPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 8655 489999999999999999999999999 9999999986
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=5.1e-30 Score=220.94 Aligned_cols=157 Identities=22% Similarity=0.405 Sum_probs=138.5
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhccc----C-------ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPI----G-------EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~ 170 (479)
+.++|||+|||+++|+++|+++|++| | .|.++++. +++|||||+|.+.++|.+|+ .|++..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 77777764 45899999999999999999 8999999
Q ss_pred CCCeeeeeccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcC
Q 011718 171 KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSA 250 (479)
Q Consensus 171 ~g~~l~v~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 250 (479)
.|+.|+|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999977542110
Q ss_pred ccccCCCCceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCC-CCC-CceEEEEeC
Q 011718 251 NFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK-SGK-RDFGFIHYA 328 (479)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~-~~~-~g~~fV~f~ 328 (479)
....++|||+|||+.+|+++|+++|++||.|..|.+..+. .+. +|||||+|.
T Consensus 91 --------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~ 144 (172)
T 2g4b_A 91 --------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYV 144 (172)
T ss_dssp --------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred --------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeC
Confidence 0003689999999999999999999999999999999886 444 899999999
Q ss_pred ChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 329 ERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 329 ~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
+.++|.+|+..||+..|+|+.|.|.+|.
T Consensus 145 ~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 145 DINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp STTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999974
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=8.9e-31 Score=226.35 Aligned_cols=166 Identities=24% Similarity=0.376 Sum_probs=141.8
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
..+...++|||+|||+++|+++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|| .|++..|.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 34567889999999999999999999999998766 33444456889999999999999999999 59999999999999
Q ss_pred eccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCC
Q 011718 178 SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257 (479)
Q Consensus 178 ~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~ 257 (479)
.++..... .
T Consensus 86 ~~~~~~~~--------------------------------------~--------------------------------- 94 (175)
T 1fje_B 86 EKPKGRDS--------------------------------------K--------------------------------- 94 (175)
T ss_dssp ECCCCSSC--------------------------------------S---------------------------------
T ss_pred ecCCCccc--------------------------------------c---------------------------------
Confidence 88764210 0
Q ss_pred CceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHH
Q 011718 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKA 336 (479)
Q Consensus 258 ~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a 336 (479)
.....++|||+|||+.+|+++|+++|++||.|..+ ...+. +|||||+|.+.++|.+|
T Consensus 95 ------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A 152 (175)
T 1fje_B 95 ------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKN 152 (175)
T ss_dssp ------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHH
T ss_pred ------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHH
Confidence 01124789999999999999999999999999877 23333 89999999999999999
Q ss_pred HHhcCCceecCeEEEEEecCCC
Q 011718 337 IKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 337 ~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
+..||++.|+|+.|+|.++.++
T Consensus 153 ~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 153 LEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHTEEEETTEEEEEEECSSC
T ss_pred HHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999876
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=5.7e-29 Score=224.17 Aligned_cols=195 Identities=21% Similarity=0.298 Sum_probs=147.9
Q ss_pred CCCCCeEEECCCCC-CCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 100 PPHGSEVFIGGLPK-DASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 100 ~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.+++++|||+|||+ ++|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45788999999999 99999999999999999999998864 7899999999999999999999999999999999
Q ss_pred ccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCC
Q 011718 179 MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT 258 (479)
Q Consensus 179 ~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~ 258 (479)
++....... +..... .... .-.|.. ... .+
T Consensus 106 ~a~~~~~~~----~~~~~~------------------------~~~~-----~~~~~~-------------~~~---~~- 135 (229)
T 2adc_A 106 LSKHQNVQL----PREGQE------------------------DQGL-----TKDYGN-------------SPL---HR- 135 (229)
T ss_dssp CCSCCCCCC----CCSSSS------------------------TTTT-----EEECTT-------------CSS---CC-
T ss_pred EecCccccC----cccccc------------------------cccc-----cccccc-------------Ccc---cc-
Confidence 987543211 000000 0000 000000 000 00
Q ss_pred ceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHH
Q 011718 259 PTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337 (479)
Q Consensus 259 ~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~ 337 (479)
+..+. ..........+++|||+|||+.+++++|+++|++|| .|..|.|.... +|||||+|.+.++|.+|+
T Consensus 136 ----~~~~~--~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~g~afV~f~~~~~A~~Ai 206 (229)
T 2adc_A 136 ----FKKPG--SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQAL 206 (229)
T ss_dssp ----CCSTT--SGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---TTCEEEEESSHHHHHHHH
T ss_pred ----cCCcc--ccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---CcEEEEEECCHHHHHHHH
Confidence 00000 000001122358999999999999999999999999 99999996532 489999999999999999
Q ss_pred HhcCCceec-CeEEEEEecCCC
Q 011718 338 KDTEKYEID-GQVLEVALARPQ 358 (479)
Q Consensus 338 ~~~~~~~~~-g~~i~v~~a~~~ 358 (479)
..|++..|+ |+.|+|.|++++
T Consensus 207 ~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 207 IDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHCCCccCCCCeEEEEEecCC
Confidence 999999999 999999999875
No 16
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=2.5e-29 Score=221.86 Aligned_cols=181 Identities=20% Similarity=0.352 Sum_probs=144.1
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhccc----C-------ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPI----G-------EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~ 170 (479)
.+++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+|| .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 5666655 456899999999999999999 7999999
Q ss_pred CCCeeeeeccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcC
Q 011718 171 KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSA 250 (479)
Q Consensus 171 ~g~~l~v~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 250 (479)
.|+.|+|.++.......-. . ...
T Consensus 76 ~g~~i~v~~~~~~~~~~~~----------------------------~-----~~~------------------------ 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGM----------------------------S-----ENP------------------------ 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCCS----------------------------S-----SCS------------------------
T ss_pred cCceEEEeCCCCCCCCCCC----------------------------c-----CCC------------------------
Confidence 9999999987653210000 0 000
Q ss_pred ccccCCCCceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeC
Q 011718 251 NFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYA 328 (479)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~ 328 (479)
.....+. . ........++|||+|||+.+++++|+++|++||.|..|.+..+.. +. +|||||+|.
T Consensus 99 ~~~~~~~---------~-----~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~ 164 (198)
T 2yh0_A 99 SVYVPGV---------V-----STVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYV 164 (198)
T ss_dssp SCCCTTS---------S-----CCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred cCCCCCC---------c-----cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEEC
Confidence 0000000 0 000012358999999999999999999999999999999998863 44 899999999
Q ss_pred ChHHHHHHHHhcCCceecCeEEEEEecCCCCC
Q 011718 329 ERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 329 ~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
+.++|.+|+..||+..|+|+.|.|.++.++..
T Consensus 165 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 165 DINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999988754
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=6.6e-29 Score=219.03 Aligned_cols=193 Identities=21% Similarity=0.301 Sum_probs=146.5
Q ss_pred CCCeEEECCCCC-CCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 102 HGSEVFIGGLPK-DASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 102 ~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
.+++|||+|||+ .+|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998764 789999999999999999999999999999999998
Q ss_pred CCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCce
Q 011718 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260 (479)
Q Consensus 181 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 260 (479)
...... ++.... ......+. |... . ..+.
T Consensus 77 ~~~~~~----~~~~~~------------------------~~~~~~~~-----~~~~-------------~---~~r~-- 105 (198)
T 1qm9_A 77 KHQNVQ----LPREGQ------------------------EDQGLTKD-----YGNS-------------P---LHRF-- 105 (198)
T ss_dssp CCCSCC----CSSSSS------------------------SSSSCEEE-----SSCC-------------C---TTSS--
T ss_pred cCCCcC----CCCcCC------------------------cccccccc-----ccCC-------------c---hhhc--
Confidence 754321 010000 00000000 0000 0 0000
Q ss_pred eeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHh
Q 011718 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 261 v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 339 (479)
..+... ........+++|||+|||..+++++|+++|++|| .|..|.|.... +|+|||+|.+.++|.+|+..
T Consensus 106 ---~~~~~~--~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 106 ---KKPGSK--NFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp ---SSCCCC--CCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHH
T ss_pred ---cCcccc--ccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHH
Confidence 000000 0000122368999999999999999999999999 99999997643 58999999999999999999
Q ss_pred cCCceec-CeEEEEEecCCC
Q 011718 340 TEKYEID-GQVLEVALARPQ 358 (479)
Q Consensus 340 ~~~~~~~-g~~i~v~~a~~~ 358 (479)
||+..|+ |+.|+|.|++++
T Consensus 178 l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 178 LHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HTSSCCSSCCSCCEEEECCC
T ss_pred hcCCccCCCCeEEEEeeccc
Confidence 9999999 999999999875
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.1e-28 Score=226.92 Aligned_cols=158 Identities=28% Similarity=0.410 Sum_probs=141.5
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+++|+++|+++|++||.|..|+|.+ ++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 44567999999999999999999999999999999954 478999999999999999999999999999998876
Q ss_pred cCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCc
Q 011718 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTP 259 (479)
Q Consensus 180 a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 259 (479)
+.+
T Consensus 93 a~~----------------------------------------------------------------------------- 95 (261)
T 3sde_A 93 ATH----------------------------------------------------------------------------- 95 (261)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 531
Q ss_pred eeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHH
Q 011718 260 TVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338 (479)
Q Consensus 260 ~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~ 338 (479)
..+|||+|||+.+|+++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+.
T Consensus 96 --------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 96 --------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp --------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHH
T ss_pred --------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHH
Confidence 2579999999999999999999999999999999887666 8999999999999999999
Q ss_pred hcC-Cceec---CeEEEEEecCCCCC
Q 011718 339 DTE-KYEID---GQVLEVALARPQTN 360 (479)
Q Consensus 339 ~~~-~~~~~---g~~i~v~~a~~~~~ 360 (479)
.|| +..+. +++|.|.++.+...
T Consensus 156 ~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 156 RCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HhcCCeEEecCCCceEEEeeccccCc
Confidence 995 55555 89999999987654
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=2e-26 Score=215.05 Aligned_cols=165 Identities=21% Similarity=0.400 Sum_probs=153.2
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
.+..++|||+|||+.+|+++|+++|+.||.|..|+++.+..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCC---------CceeeccCCCCCc-CHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhc
Q 011718 180 SET---------NNRLFIGNVPKSW-TEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTS 249 (479)
Q Consensus 180 a~~---------~~~l~v~nl~~~~-~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 249 (479)
+.+ .++|||+|||+.+ ++++|+++|+.||. |..+.++.++ .++++|+|||.|.+.++|..|+..|+
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~- 247 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQAD- 247 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHT-
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhC-
Confidence 864 3589999999995 99999999999999 9999999974 68899999999999999999999999
Q ss_pred CccccCCCCceeeecCCCCC
Q 011718 250 ANFKLDGNTPTVSWAEPKST 269 (479)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~ 269 (479)
+..+.++.|.|.|+.++..
T Consensus 248 -g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 248 -GLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp -TCEETTEECEEEECCSSSC
T ss_pred -CCccCCeEEEEEEecCCCc
Confidence 5567999999999988754
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=4.3e-26 Score=213.75 Aligned_cols=162 Identities=22% Similarity=0.361 Sum_probs=142.1
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
...++|||+|||+.+|+++|+++|+.|| .|..|+|+.+.. +.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4688999999999999999999999999 999999998876 88999999999999999999999999999999999998
Q ss_pred cCC-------------CceeeccCCCCC-cCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHH
Q 011718 180 SET-------------NNRLFIGNVPKS-WTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245 (479)
Q Consensus 180 a~~-------------~~~l~v~nl~~~-~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 245 (479)
+.+ .++|||+|||+. +++++|+++|+.||. |..+.++.++..+++++|||||.|.+.++|..|+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 753 368999999999 999999999999999 9999999875435899999999999999999999
Q ss_pred HhhcCccccCCCCceeeecCCC
Q 011718 246 KMTSANFKLDGNTPTVSWAEPK 267 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~~ 267 (479)
.|+ +..+.++.|.|.|+.++
T Consensus 272 ~l~--g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMN--RSLLGNREISVSLADKK 291 (292)
T ss_dssp GGT--TEEETTEEEEEEECCCC
T ss_pred Hhc--CCEECCcEEEEEEecCC
Confidence 998 56788999999998875
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=1e-20 Score=159.83 Aligned_cols=137 Identities=22% Similarity=0.322 Sum_probs=106.8
Q ss_pred CCCcceEEEEeCChhHHHHHHHHhhcCc-----cccCCCCceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHH
Q 011718 224 SRNRGFAFVLYYNNACADYSRQKMTSAN-----FKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298 (479)
Q Consensus 224 ~~~~g~afv~f~~~~~a~~a~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 298 (479)
.+++||+||+|.+.+.|.+|+..++... ..+.+............... .........+|||+|||+++|+++|+
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHH-HHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSS-CCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccc-cccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 3689999999999999999998877421 22223333333222211111 11112346899999999999999999
Q ss_pred HHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCCC
Q 011718 299 ELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361 (479)
Q Consensus 299 ~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~~ 361 (479)
++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.++...
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999864 44 899999999999999999999999999999999999876543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.1e-21 Score=155.77 Aligned_cols=97 Identities=24% Similarity=0.407 Sum_probs=73.9
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+||+.|++..|.|+.|+|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 346789999999999999999999999999999999986 458999999999999999999999999999999999987
Q ss_pred CCC--------------ceeeccCCCCCcCHHH
Q 011718 181 ETN--------------NRLFIGNVPKSWTEKE 199 (479)
Q Consensus 181 ~~~--------------~~l~v~nl~~~~~~~~ 199 (479)
.++ .+|||+|||+.+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 642 4699999999988764
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.9e-21 Score=147.75 Aligned_cols=82 Identities=33% Similarity=0.580 Sum_probs=78.8
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
-.+++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 011718 181 ET 182 (479)
Q Consensus 181 ~~ 182 (479)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=7.5e-20 Score=143.28 Aligned_cols=84 Identities=26% Similarity=0.336 Sum_probs=80.1
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
+++.++|||+|||+++|+++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 011718 180 SETN 183 (479)
Q Consensus 180 a~~~ 183 (479)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8754
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=7.5e-20 Score=140.50 Aligned_cols=79 Identities=32% Similarity=0.527 Sum_probs=74.2
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
++++|||+|||+++|+++|+++|++||.|..|.|++++. +. +|||||+|.+.++|.+|+..||+..|+|+.|+|.+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 357899999999999999999999999999999998876 34 8999999999999999999999999999999999997
Q ss_pred C
Q 011718 357 P 357 (479)
Q Consensus 357 ~ 357 (479)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 26
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=4.1e-20 Score=154.44 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=109.6
Q ss_pred CCCcceEEEEeCChhHHHHHHHHh-hcCccccCCCCceeeecCCCCC---------CCchhhhhhccceEEecCCCCCCC
Q 011718 224 SRNRGFAFVLYYNNACADYSRQKM-TSANFKLDGNTPTVSWAEPKST---------PDHSAAAASQVKALYVKNLPENTT 293 (479)
Q Consensus 224 ~~~~g~afv~f~~~~~a~~a~~~~-~~~~~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~~~~~ 293 (479)
.+.+|+++|+|.+.+.|.+|+..+ + ...+.+ .+.+.++..... ...........++|||+|||+.+|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~n--g~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYAN--DNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHH--HHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhc--CCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 466899999999999999999999 7 456777 888887765211 111122234468999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 294 TKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 294 ~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..||+..|+|+.|+|.++.++.
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999987 35899999999999999999999999999999999998764
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-20 Score=141.11 Aligned_cols=83 Identities=31% Similarity=0.509 Sum_probs=76.5
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc-CCCCCCCeeeeecc
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC-SKDFKGKTIRCSMS 180 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~-~~~~~g~~l~v~~a 180 (479)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.|+.++|||||+|.+.++|.+||+.++ +..|.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999998764 55799999999999
Q ss_pred CCCce
Q 011718 181 ETNNR 185 (479)
Q Consensus 181 ~~~~~ 185 (479)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=7.1e-20 Score=138.81 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=75.2
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCc--eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC----CCCCee
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGE--VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD----FKGKTI 175 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~--i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~----~~g~~l 175 (479)
.=.||||+|||+.+|+++|+++|++||. |.+|+|++++.|++++|||||+|.+.++|.+||+.||+.. |.||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3458999999999999999999999995 6799999999999999999999999999999999999974 889999
Q ss_pred eeeccCC
Q 011718 176 RCSMSET 182 (479)
Q Consensus 176 ~v~~a~~ 182 (479)
.|.+|+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 29
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=2.3e-20 Score=166.55 Aligned_cols=79 Identities=25% Similarity=0.319 Sum_probs=73.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCC--CEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHG--EVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
.++|||+||++++|+++|+++|++|| .|..|+|+.++. ++ ||||||+|.+.++|.+||..||++.|+|+.|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 57899999999999999999999999 999999999875 44 899999999999999999999999999999999999
Q ss_pred CCC
Q 011718 356 RPQ 358 (479)
Q Consensus 356 ~~~ 358 (479)
.+.
T Consensus 148 ~~~ 150 (229)
T 3q2s_C 148 NKQ 150 (229)
T ss_dssp CHH
T ss_pred CCC
Confidence 764
No 30
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.8e-19 Score=134.49 Aligned_cols=85 Identities=31% Similarity=0.608 Sum_probs=80.5
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
+...++|||+|||..+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 97653
No 31
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=2.7e-19 Score=142.30 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=95.8
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
+..+++|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 55699999999999999999999999999999999999
Q ss_pred cCCCceeeccCCCCCcCHHHHHHHHHhhCC
Q 011718 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209 (479)
Q Consensus 180 a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 209 (479)
+.+.... .+++...++++|.++|+.||.
T Consensus 82 a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 9865433 778888999999999999985
No 32
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=8.9e-19 Score=130.50 Aligned_cols=81 Identities=25% Similarity=0.497 Sum_probs=77.6
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
+++|||+|||.++|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred C
Q 011718 183 N 183 (479)
Q Consensus 183 ~ 183 (479)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 33
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=136.23 Aligned_cols=86 Identities=26% Similarity=0.543 Sum_probs=81.0
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
......++|||+|||..+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eccCCC
Q 011718 178 SMSETN 183 (479)
Q Consensus 178 ~~a~~~ 183 (479)
.++.++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998765
No 34
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=132.51 Aligned_cols=83 Identities=28% Similarity=0.482 Sum_probs=76.9
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||..+|+++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35679999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CCC
Q 011718 181 ETN 183 (479)
Q Consensus 181 ~~~ 183 (479)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 35
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=5.5e-19 Score=132.31 Aligned_cols=82 Identities=27% Similarity=0.555 Sum_probs=78.2
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
..+.++|||+|||+++|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45778999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred cC
Q 011718 180 SE 181 (479)
Q Consensus 180 a~ 181 (479)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 36
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=134.66 Aligned_cols=81 Identities=21% Similarity=0.428 Sum_probs=73.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCC-CEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcC-CceecCeEEEEEec
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHG-EVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTE-KYEIDGQVLEVALA 355 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~-~~~~~g~~i~v~~a 355 (479)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.+ . ||||||+|.+.++|.+|++.++ +..|+|++|+|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999998764 3 8999999999999999999875 56799999999999
Q ss_pred CCCCC
Q 011718 356 RPQTN 360 (479)
Q Consensus 356 ~~~~~ 360 (479)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 88754
No 37
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=133.69 Aligned_cols=85 Identities=29% Similarity=0.471 Sum_probs=80.2
Q ss_pred cCCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeE--------EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 011718 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFE--------VGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSK 168 (479)
Q Consensus 97 ~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~ 168 (479)
...+...++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|++.||+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345678899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCCCeeeeeccC
Q 011718 169 DFKGKTIRCSMSE 181 (479)
Q Consensus 169 ~~~g~~l~v~~a~ 181 (479)
.|.|+.|+|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=133.71 Aligned_cols=85 Identities=25% Similarity=0.584 Sum_probs=79.8
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999998 89999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 987653
No 39
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9e-19 Score=136.26 Aligned_cols=86 Identities=29% Similarity=0.522 Sum_probs=80.7
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++.++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 997653
No 40
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=3.8e-19 Score=134.46 Aligned_cols=80 Identities=26% Similarity=0.509 Sum_probs=72.8
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccC--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIG--EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 011718 182 TN 183 (479)
Q Consensus 182 ~~ 183 (479)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 41
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.5e-19 Score=135.08 Aligned_cols=85 Identities=29% Similarity=0.410 Sum_probs=80.5
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
..+.++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98754
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=6.5e-19 Score=139.69 Aligned_cols=82 Identities=18% Similarity=0.411 Sum_probs=75.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
..+|||+|||+++|+++|+++|++||.|.+|+|+.+..++||||||+|.+.++|.+||..|+++.|+|+.|+|.++.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 46899999999999999999999999999999998876668999999999999999999999999999999999998765
Q ss_pred CC
Q 011718 360 NK 361 (479)
Q Consensus 360 ~~ 361 (479)
.+
T Consensus 85 ~~ 86 (115)
T 4f25_A 85 ER 86 (115)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=9.6e-19 Score=134.12 Aligned_cols=85 Identities=29% Similarity=0.622 Sum_probs=80.5
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
++++|||+|||..+|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCcee
Q 011718 182 TNNRL 186 (479)
Q Consensus 182 ~~~~l 186 (479)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 76543
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=133.41 Aligned_cols=85 Identities=26% Similarity=0.554 Sum_probs=79.6
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 987653
No 45
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=135.95 Aligned_cols=87 Identities=31% Similarity=0.467 Sum_probs=81.5
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
......++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eccCCCc
Q 011718 178 SMSETNN 184 (479)
Q Consensus 178 ~~a~~~~ 184 (479)
.++.++.
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9998654
No 46
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-18 Score=131.45 Aligned_cols=82 Identities=22% Similarity=0.397 Sum_probs=76.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
.++|||+|||+.+|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 58999999999999999999999999999999999874 44 89999999999999999999999999999999999998
Q ss_pred CCCC
Q 011718 358 QTNK 361 (479)
Q Consensus 358 ~~~~ 361 (479)
+...
T Consensus 88 ~~~~ 91 (99)
T 1whw_A 88 KKEA 91 (99)
T ss_dssp CSTT
T ss_pred Cccc
Confidence 8654
No 47
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=133.70 Aligned_cols=84 Identities=31% Similarity=0.453 Sum_probs=79.4
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.+.+.++|||+|||+.+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 011718 179 MSET 182 (479)
Q Consensus 179 ~a~~ 182 (479)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 48
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=9.7e-19 Score=136.06 Aligned_cols=85 Identities=21% Similarity=0.335 Sum_probs=80.4
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 011718 179 MSETN 183 (479)
Q Consensus 179 ~a~~~ 183 (479)
++...
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 99754
No 49
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1.6e-18 Score=140.04 Aligned_cols=86 Identities=33% Similarity=0.468 Sum_probs=81.5
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
..+.+.++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 011718 178 SMSETN 183 (479)
Q Consensus 178 ~~a~~~ 183 (479)
.++.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998764
No 50
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=1.3e-18 Score=138.20 Aligned_cols=85 Identities=27% Similarity=0.485 Sum_probs=80.2
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 97653
No 51
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=3.9e-19 Score=173.55 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=75.9
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+.+|++||.|+.|.|+.+.. +. +|||||+|.+.++|.+||..||++.|+|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 357999999999999999999999999999999998864 33 8999999999999999999999999999999999999
Q ss_pred CCCC
Q 011718 357 PQTN 360 (479)
Q Consensus 357 ~~~~ 360 (479)
++..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7654
No 52
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=135.36 Aligned_cols=86 Identities=30% Similarity=0.576 Sum_probs=80.6
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 987643
No 53
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=135.35 Aligned_cols=84 Identities=26% Similarity=0.464 Sum_probs=79.5
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
...+++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 011718 180 SETN 183 (479)
Q Consensus 180 a~~~ 183 (479)
+.++
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8654
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=133.46 Aligned_cols=83 Identities=33% Similarity=0.570 Sum_probs=78.7
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.++..++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 011718 179 MSE 181 (479)
Q Consensus 179 ~a~ 181 (479)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 55
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=2.1e-18 Score=137.11 Aligned_cols=86 Identities=29% Similarity=0.506 Sum_probs=80.8
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||+.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++..+.
T Consensus 91 ~a~~~~ 96 (115)
T 2dgo_A 91 WATRKP 96 (115)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 997653
No 56
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.5e-18 Score=132.28 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=78.2
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..+.+|||||+|.+.++|.+|+..||++.|.|+.|+|.++.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 35899999999999999999999999999999999987766899999999999999999999999999999999999987
Q ss_pred CCCC
Q 011718 359 TNKR 362 (479)
Q Consensus 359 ~~~~ 362 (479)
....
T Consensus 94 ~~~~ 97 (103)
T 2cqi_A 94 SSQK 97 (103)
T ss_dssp TCCC
T ss_pred cccc
Confidence 6543
No 57
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=2.5e-18 Score=144.57 Aligned_cols=83 Identities=25% Similarity=0.395 Sum_probs=76.9
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..+ . +|||||+|.+.++|.+||..||++.|+|+.|+|.++.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4689999999999999999999999999999999988764 3 8999999999999999999999999999999999999
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
+....
T Consensus 118 ~~~~~ 122 (156)
T 1h2v_Z 118 GFKEG 122 (156)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 86553
No 58
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=7.4e-18 Score=142.17 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=109.2
Q ss_pred EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec-------------------cCCCceeeccCCC
Q 011718 132 EVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM-------------------SETNNRLFIGNVP 192 (479)
Q Consensus 132 ~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~-------------------a~~~~~l~v~nl~ 192 (479)
+++|+.+.. +++|||||+|.+.++|++|++.+++.......+.+.. .....+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 467777654 6899999999999999999988775432222222111 1235799999999
Q ss_pred CCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeeecCCCCCC
Q 011718 193 KSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270 (479)
Q Consensus 193 ~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~ 270 (479)
+.+++++|+++|+.||. |..+.++.++ .+++++|||||+|.+.++|..|+..|+ +..+.++.|.|.++.+....
T Consensus 80 ~~~~~~~l~~~F~~~G~-v~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR-VGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMD--GAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSC-EEEEECCCCS-SCTTSCCEEEEEESBHHHHHHHHHHST--TEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCC-eEEEEEeecC-CCCccceEEEEEECCHHHHHHHHHHhC--CCEECCeEEEEEECCCCCCC
Confidence 99999999999999999 9999999884 578999999999999999999999998 56789999999999876543
No 59
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=136.02 Aligned_cols=87 Identities=26% Similarity=0.459 Sum_probs=81.4
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc------CCCCC
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC------SKDFK 171 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~------~~~~~ 171 (479)
......++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345578899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CCeeeeeccCCCc
Q 011718 172 GKTIRCSMSETNN 184 (479)
Q Consensus 172 g~~l~v~~a~~~~ 184 (479)
|+.|+|.++.++.
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999997653
No 60
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=133.69 Aligned_cols=84 Identities=26% Similarity=0.444 Sum_probs=78.6
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCC---CCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKD---SGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.++. |+.++|||||+|.+.++|.+|+..||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred eccCCCc
Q 011718 178 SMSETNN 184 (479)
Q Consensus 178 ~~a~~~~ 184 (479)
.++.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997653
No 61
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=6e-19 Score=136.08 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=78.0
Q ss_pred CCCeEEECCCCC------CCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCC-Ce
Q 011718 102 HGSEVFIGGLPK------DASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG-KT 174 (479)
Q Consensus 102 ~~~~l~V~nLp~------~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g-~~ 174 (479)
.+++|||+|||+ ++++++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|.+||+.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eeeeccCCC
Q 011718 175 IRCSMSETN 183 (479)
Q Consensus 175 l~v~~a~~~ 183 (479)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998653
No 62
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=133.86 Aligned_cols=80 Identities=25% Similarity=0.443 Sum_probs=75.1
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|++++. +.++|||||+|.+.++|.+||. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999987 9999999999999999999998 899999999999988
Q ss_pred cC
Q 011718 180 SE 181 (479)
Q Consensus 180 a~ 181 (479)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 64
No 63
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=5.7e-18 Score=132.22 Aligned_cols=84 Identities=31% Similarity=0.477 Sum_probs=78.3
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCC---Ceee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG---KTIR 176 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g---~~l~ 176 (479)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+||..||+..|.+ +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999997 69999999999999999999999999999998 9999
Q ss_pred eeccCCCc
Q 011718 177 CSMSETNN 184 (479)
Q Consensus 177 v~~a~~~~ 184 (479)
|.++..+.
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99997643
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=132.20 Aligned_cols=83 Identities=24% Similarity=0.457 Sum_probs=78.0
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+.+|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446789999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 97653
No 65
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=134.31 Aligned_cols=87 Identities=26% Similarity=0.492 Sum_probs=80.8
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeec-CCCCCceeEEEEEecCHHHHHHHHHHh-cCCCCCCCeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKD-KDSGESKGFAFVAFRSKEVAKRAIDEL-CSKDFKGKTIR 176 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~-~~~g~~~g~afV~F~~~e~a~~Al~~l-~~~~~~g~~l~ 176 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|+++ +.++.++|||||+|.+.++|.+||..| |+..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999998 778999999999999999999999999 99999999999
Q ss_pred eeccCCCce
Q 011718 177 CSMSETNNR 185 (479)
Q Consensus 177 v~~a~~~~~ 185 (479)
|.++.++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987543
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=130.43 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=76.2
Q ss_pred ccceEEecCCCCCCCHHHHH----HHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 279 QVKALYVKNLPENTTTKQLK----ELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
..++|||+|||+.+++++|+ ++|++||.|..|.|+.++.+ ++||||+|.+.++|.+|+..||+..|+|+.|+|.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35799999999999999999 99999999999999998877 89999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011718 355 ARPQTN 360 (479)
Q Consensus 355 a~~~~~ 360 (479)
++++..
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 987654
No 67
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=133.94 Aligned_cols=84 Identities=27% Similarity=0.499 Sum_probs=79.4
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEE-EEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEV-GLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
...++|||+|||+.+|+++|+++|++||.|..| +|++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988899999999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 87643
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.9e-18 Score=131.20 Aligned_cols=85 Identities=24% Similarity=0.392 Sum_probs=78.7
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+..+.+|||||+|.+.++|.+|+..||++.|+|+.|+|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 34689999999999999999999999999999999998766689999999999999999999999999999999999998
Q ss_pred CCCCC
Q 011718 358 QTNKR 362 (479)
Q Consensus 358 ~~~~~ 362 (479)
+....
T Consensus 93 ~~~~~ 97 (103)
T 2cq3_A 93 RVMTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 69
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=134.04 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=75.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
.++|||+|||+.+|+++|+++|++||.|.+|.|+.+.. +. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 57999999999999999999999999999999999887 44 89999999999999999999999999999999999976
Q ss_pred CC
Q 011718 358 QT 359 (479)
Q Consensus 358 ~~ 359 (479)
..
T Consensus 86 ~~ 87 (110)
T 3s8s_A 86 GQ 87 (110)
T ss_dssp TH
T ss_pred Cc
Confidence 54
No 70
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=135.34 Aligned_cols=85 Identities=26% Similarity=0.528 Sum_probs=80.3
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 71
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-18 Score=130.22 Aligned_cols=82 Identities=27% Similarity=0.530 Sum_probs=77.6
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
+.+.++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999987
Q ss_pred cC
Q 011718 180 SE 181 (479)
Q Consensus 180 a~ 181 (479)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 72
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=132.45 Aligned_cols=84 Identities=25% Similarity=0.331 Sum_probs=79.2
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcc-cCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC-CCCCeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEP-IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD-FKGKTIR 176 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~-~~g~~l~ 176 (479)
.....++|||+|||+++|+++|+++|++ ||.|..|+|+.++ ++.++|||||+|.+.++|.+||+.|++.. |.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred eeccCCC
Q 011718 177 CSMSETN 183 (479)
Q Consensus 177 v~~a~~~ 183 (479)
|.++.++
T Consensus 84 v~~a~~~ 90 (104)
T 2dhg_A 84 LSVAIPK 90 (104)
T ss_dssp CCBCCCC
T ss_pred EEEccCC
Confidence 9998754
No 73
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=1.1e-17 Score=129.89 Aligned_cols=79 Identities=33% Similarity=0.680 Sum_probs=73.2
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||++.|+|+.|.|.++.++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 358999999999999999999999999999999974 79999999999999999999999999999999999987
Q ss_pred CCCCC
Q 011718 359 TNKRT 363 (479)
Q Consensus 359 ~~~~~ 363 (479)
.....
T Consensus 84 ~~~~~ 88 (103)
T 2dgu_A 84 DQKRK 88 (103)
T ss_dssp CCCCC
T ss_pred cccch
Confidence 66543
No 74
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.4e-18 Score=141.60 Aligned_cols=123 Identities=22% Similarity=0.339 Sum_probs=79.2
Q ss_pred eEEEEeCChhHHHHHHHHhhcCccccCCCCceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEE
Q 011718 229 FAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT 308 (479)
Q Consensus 229 ~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 308 (479)
+.|+.|.+...+..|+..+++.... ++. .+.+..+. ......++|||+|||+.+|+++|+++|++||.|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~--g~~-~~~~~~~~-------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM--GRG-SMSYGRPP-------PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp --------------------------------CCSCCSC-------SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred cccccccCCCchhhhhhhccCCCCC--CCC-CCCcCCCC-------CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 4567777777777777777653321 111 11222221 1234468999999999999999999999999999
Q ss_pred EEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCCC
Q 011718 309 KVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361 (479)
Q Consensus 309 ~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~~ 361 (479)
.|.|+.++. +. +|||||+|.+.++|.+||..||+..|+|+.|+|.++++....
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999998864 33 899999999999999999999999999999999999876543
No 75
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=2.7e-18 Score=134.35 Aligned_cols=86 Identities=27% Similarity=0.528 Sum_probs=80.2
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCC---CCCee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF---KGKTI 175 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~---~g~~l 175 (479)
.....++|||+|||..+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..+ .++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999999999999999999999999999999999999987 89999
Q ss_pred eeeccCCCc
Q 011718 176 RCSMSETNN 184 (479)
Q Consensus 176 ~v~~a~~~~ 184 (479)
+|.++..+.
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999997654
No 76
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=1.1e-17 Score=132.97 Aligned_cols=84 Identities=19% Similarity=0.344 Sum_probs=77.4
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+||..||++.|+|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 368999999999999999999999999999999998864 44 8999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011718 357 PQTNKR 362 (479)
Q Consensus 357 ~~~~~~ 362 (479)
++....
T Consensus 94 ~~~~~~ 99 (115)
T 2dgo_A 94 RKPPAP 99 (115)
T ss_dssp CCCCCS
T ss_pred CCCCCC
Confidence 876543
No 77
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=131.56 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=72.6
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC--CCCCCCeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS--KDFKGKTIR 176 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~--~~~~g~~l~ 176 (479)
.+.+.++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|+.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567889999999999999999999999999999999864 68999999999999999998864 679999999
Q ss_pred eeccCCCc
Q 011718 177 CSMSETNN 184 (479)
Q Consensus 177 v~~a~~~~ 184 (479)
|.+++.+.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99997653
No 78
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=135.07 Aligned_cols=83 Identities=33% Similarity=0.601 Sum_probs=78.6
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+++|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred cCCC
Q 011718 180 SETN 183 (479)
Q Consensus 180 a~~~ 183 (479)
+.+.
T Consensus 83 a~~~ 86 (116)
T 2fy1_A 83 AKKP 86 (116)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 79
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.2e-18 Score=129.41 Aligned_cols=81 Identities=23% Similarity=0.521 Sum_probs=76.0
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
.++|||+|||+.+|+++|+++|++||.|..|.|..+.. +. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 58999999999999999999999999999999998875 33 89999999999999999999999999999999999988
Q ss_pred CCC
Q 011718 358 QTN 360 (479)
Q Consensus 358 ~~~ 360 (479)
+..
T Consensus 85 ~~~ 87 (95)
T 2dnz_A 85 RLD 87 (95)
T ss_dssp CCC
T ss_pred ccC
Confidence 755
No 80
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=1.4e-18 Score=154.92 Aligned_cols=81 Identities=25% Similarity=0.500 Sum_probs=76.7
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccC--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIG--EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
..++|||+|||+++|+++|+++|++|| .|.+|+|++++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 011718 180 SET 182 (479)
Q Consensus 180 a~~ 182 (479)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 81
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=132.23 Aligned_cols=84 Identities=18% Similarity=0.398 Sum_probs=79.3
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCcee-EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCe----
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVF-EVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKT---- 174 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~---- 174 (479)
....++|||+|||+.+|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|++|+..||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44678999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred eeeeccCCC
Q 011718 175 IRCSMSETN 183 (479)
Q Consensus 175 l~v~~a~~~ 183 (479)
|+|.++...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998754
No 82
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=3e-18 Score=145.35 Aligned_cols=85 Identities=24% Similarity=0.398 Sum_probs=79.4
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 011718 179 MSETN 183 (479)
Q Consensus 179 ~a~~~ 183 (479)
++..+
T Consensus 148 ~a~~~ 152 (165)
T 1rk8_A 148 WCFVK 152 (165)
T ss_dssp ESEEC
T ss_pred EecCC
Confidence 98654
No 83
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=131.75 Aligned_cols=78 Identities=17% Similarity=0.347 Sum_probs=71.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCC--EEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCc----eecCeEEE
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGE--VTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKY----EIDGQVLE 351 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~----~~~g~~i~ 351 (479)
-.+|||+|||+.+|+++|+++|++||. |.+|+|++++.+. ||||||+|.+.++|.+|++.||+. .|+||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 478999999999999999999999995 6689999987643 899999999999999999999985 69999999
Q ss_pred EEecCC
Q 011718 352 VALARP 357 (479)
Q Consensus 352 v~~a~~ 357 (479)
|.||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 84
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-17 Score=131.88 Aligned_cols=81 Identities=32% Similarity=0.560 Sum_probs=74.7
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||..+++ .|+|+.|+|.++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 468999999999999999999999999999999999875 33 89999999999999999999998 8999999999998
Q ss_pred CCCC
Q 011718 357 PQTN 360 (479)
Q Consensus 357 ~~~~ 360 (479)
+...
T Consensus 95 ~~~~ 98 (116)
T 2cqd_A 95 LGAK 98 (116)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 7644
No 85
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=130.55 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=72.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcC--CceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE--KYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~--~~~~~g~~i~v~~a~~ 357 (479)
.++|||+|||+.+|+++|+++|++||.|.+|.|++++ |||||+|.+.++|.+|+..|+ +..|+|++|+|.++++
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k----GfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 5899999999999999999999999999999999864 999999999999999999886 4789999999999988
Q ss_pred CCCCC
Q 011718 358 QTNKR 362 (479)
Q Consensus 358 ~~~~~ 362 (479)
+....
T Consensus 92 ~~~~~ 96 (105)
T 1sjq_A 92 KELKT 96 (105)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 76543
No 86
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=130.64 Aligned_cols=82 Identities=30% Similarity=0.457 Sum_probs=77.0
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++. +.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34567999999999999999999999999999999999986 99999999999999999999999999999999999998
Q ss_pred cCC
Q 011718 180 SET 182 (479)
Q Consensus 180 a~~ 182 (479)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 87
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=4.1e-18 Score=128.08 Aligned_cols=81 Identities=27% Similarity=0.561 Sum_probs=75.4
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999995 58888999999998
Q ss_pred cc
Q 011718 179 MS 180 (479)
Q Consensus 179 ~a 180 (479)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 88
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=9.4e-18 Score=127.57 Aligned_cols=83 Identities=27% Similarity=0.431 Sum_probs=77.3
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+++ ++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999984 689999999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87643
No 89
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.9e-18 Score=129.27 Aligned_cols=83 Identities=30% Similarity=0.529 Sum_probs=76.2
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+. |+++.|+|+.|+|.++.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 358999999999999999999999999999999998875 33 8999999999999999998 99999999999999999
Q ss_pred CCCCCC
Q 011718 357 PQTNKR 362 (479)
Q Consensus 357 ~~~~~~ 362 (479)
++....
T Consensus 88 ~~~~~~ 93 (99)
T 2dgs_A 88 PRDSKS 93 (99)
T ss_dssp CCCCCC
T ss_pred CCcccC
Confidence 876543
No 90
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=131.04 Aligned_cols=84 Identities=30% Similarity=0.489 Sum_probs=77.3
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 3589999999999999999999999999999999988653 3 8999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011718 357 PQTNKR 362 (479)
Q Consensus 357 ~~~~~~ 362 (479)
++..+.
T Consensus 91 ~~~~~~ 96 (102)
T 2cqb_A 91 PMRIKE 96 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 91
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=131.79 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=76.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++...
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 5799999999999999999999999999999999988766 899999999999999999999999999999999999865
Q ss_pred CC
Q 011718 359 TN 360 (479)
Q Consensus 359 ~~ 360 (479)
..
T Consensus 95 ~~ 96 (114)
T 2do0_A 95 LP 96 (114)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 92
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=2.2e-18 Score=124.94 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=69.4
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..|.|++|+|.+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999964 6899999999999999999999999999999999987
No 93
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=2.7e-18 Score=137.19 Aligned_cols=83 Identities=28% Similarity=0.470 Sum_probs=78.0
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred ccC
Q 011718 179 MSE 181 (479)
Q Consensus 179 ~a~ 181 (479)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 864
No 94
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=5.2e-18 Score=131.87 Aligned_cols=83 Identities=23% Similarity=0.452 Sum_probs=77.8
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+++|+++|+++|++|| |..|+|++++.+++++|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44678999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 87643
No 95
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=127.76 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=70.8
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCc--eecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY--EIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~--~~~g~~i~v~~a~ 356 (479)
++++|||+|||+.+|+++|+++|++||.|.+|.|++.+ |||||+|.+.++|.+|+..|++. .|.|++|.|.|++
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k----g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK----RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 46899999999999999999999999999999998654 89999999999999999999876 4889999999998
Q ss_pred CCC
Q 011718 357 PQT 359 (479)
Q Consensus 357 ~~~ 359 (479)
++.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 764
No 96
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=3.8e-18 Score=128.90 Aligned_cols=80 Identities=30% Similarity=0.518 Sum_probs=76.5
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
.++|||+|||+.+|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999999888999999999999999999999 8999999999999999876
Q ss_pred C
Q 011718 183 N 183 (479)
Q Consensus 183 ~ 183 (479)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 97
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=135.02 Aligned_cols=85 Identities=27% Similarity=0.478 Sum_probs=79.9
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCcee--------EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCC
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVF--------EVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK 171 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~ 171 (479)
....++|||+|||+.+|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CCeeeeeccCCCc
Q 011718 172 GKTIRCSMSETNN 184 (479)
Q Consensus 172 g~~l~v~~a~~~~ 184 (479)
|+.|+|.++..+.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999998654
No 98
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.4e-18 Score=129.61 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=75.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEE-EccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v-~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
.++|||+|||+.+|+++|+++|++||.|..| .|+.++. +. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 5899999999999999999999999999999 9988854 44 8999999999999999999999999999999999999
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
++..+
T Consensus 85 ~~~~~ 89 (96)
T 1x5t_A 85 KKDSK 89 (96)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 99
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.4e-18 Score=129.66 Aligned_cols=82 Identities=22% Similarity=0.488 Sum_probs=76.9
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 35799999999999999999999999999999999988666 89999999999999999999999999999999999988
Q ss_pred CCC
Q 011718 358 QTN 360 (479)
Q Consensus 358 ~~~ 360 (479)
+..
T Consensus 96 ~~~ 98 (100)
T 2do4_A 96 GPS 98 (100)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 100
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=130.44 Aligned_cols=83 Identities=27% Similarity=0.429 Sum_probs=77.1
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 358999999999999999999999999999999999874 44 8999999999999999999999999999999999999
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
++...
T Consensus 94 ~~~~~ 98 (105)
T 1x5u_A 94 AHNKN 98 (105)
T ss_dssp TTSCC
T ss_pred CCCcC
Confidence 87654
No 101
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=3.6e-18 Score=134.54 Aligned_cols=85 Identities=24% Similarity=0.398 Sum_probs=79.7
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34467899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 011718 179 MSETN 183 (479)
Q Consensus 179 ~a~~~ 183 (479)
++.++
T Consensus 102 ~a~~~ 106 (110)
T 1oo0_B 102 WCFVK 106 (110)
T ss_dssp ESEES
T ss_pred EcccC
Confidence 98654
No 102
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=7.9e-18 Score=133.45 Aligned_cols=81 Identities=27% Similarity=0.492 Sum_probs=76.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.++|||+|||+++|+++|+++|++||.|..|.|..+..+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++.++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 5799999999999999999999999999999999988655 899999999999999999999999999999999999876
Q ss_pred CC
Q 011718 359 TN 360 (479)
Q Consensus 359 ~~ 360 (479)
..
T Consensus 87 ~~ 88 (116)
T 2fy1_A 87 SF 88 (116)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 103
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=127.96 Aligned_cols=79 Identities=23% Similarity=0.254 Sum_probs=72.2
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC--CCCCeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD--FKGKTIR 176 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~--~~g~~l~ 176 (479)
..+++++|||+|||+++|+++|+++|++||.|.+|++++ .||+|||+|.+.++|.+|++.|++.. |.|+.|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 445788999999999999999999999999999999975 36899999999999999999999876 7899999
Q ss_pred eeccCCC
Q 011718 177 CSMSETN 183 (479)
Q Consensus 177 v~~a~~~ 183 (479)
|.+++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999764
No 104
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=130.67 Aligned_cols=83 Identities=29% Similarity=0.454 Sum_probs=76.9
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+++|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 368999999999999999999999999999999998876 34 8999999999999999999999999999999999999
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
+....
T Consensus 92 ~~~~~ 96 (103)
T 2dnm_A 92 YGRRD 96 (103)
T ss_dssp SCCSC
T ss_pred cCCCC
Confidence 76543
No 105
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=3.6e-18 Score=132.33 Aligned_cols=84 Identities=27% Similarity=0.418 Sum_probs=77.5
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC-
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET- 182 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~- 182 (479)
++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 689999999999999999999999999999999999864
Q ss_pred ---------------CceeeccCCC
Q 011718 183 ---------------NNRLFIGNVP 192 (479)
Q Consensus 183 ---------------~~~l~v~nl~ 192 (479)
..+|||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 3568888886
No 106
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=7e-18 Score=132.20 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=78.2
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
......++|||+|||+.+|+++|+++|++||.|..|+|+.+. ++.++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345678899999999999999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred eccC
Q 011718 178 SMSE 181 (479)
Q Consensus 178 ~~a~ 181 (479)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 107
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=7.8e-18 Score=122.05 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=69.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
+..|||+||++.+|+++|+++|.+||.|.++++... ||||||+|.+.++|.+|++.||+..|.|+.|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~----kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN----QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC----CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467999999999999999999999999999999774 4999999999999999999999999999999999994
No 108
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=3e-18 Score=124.80 Aligned_cols=75 Identities=27% Similarity=0.620 Sum_probs=72.1
Q ss_pred eEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
+|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++ |++..|.|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998889999999999999999999997 8999999999999875
No 109
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.4e-18 Score=132.16 Aligned_cols=83 Identities=30% Similarity=0.661 Sum_probs=78.6
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
..++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34689999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CCc
Q 011718 182 TNN 184 (479)
Q Consensus 182 ~~~ 184 (479)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
No 110
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1e-17 Score=124.72 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=73.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.+|||+|||+.+++++|+++|++||.|..|.++.+.. +. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999999999999999998854 44 899999999999999999999999999999999999876
Q ss_pred C
Q 011718 359 T 359 (479)
Q Consensus 359 ~ 359 (479)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 111
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.5e-18 Score=131.59 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=76.0
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
+..++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred C
Q 011718 181 E 181 (479)
Q Consensus 181 ~ 181 (479)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 112
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.8e-18 Score=131.65 Aligned_cols=83 Identities=29% Similarity=0.494 Sum_probs=77.1
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ .+. ++||||+|.+.++|.+|+..||+..|+|+.|.|.++.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 4689999999999999999999999999999999988 555 89999999999999999999999999999999999998
Q ss_pred CCCCC
Q 011718 358 QTNKR 362 (479)
Q Consensus 358 ~~~~~ 362 (479)
+..+.
T Consensus 93 ~~~~~ 97 (103)
T 2d9p_A 93 KEERQ 97 (103)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 86643
No 113
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=133.14 Aligned_cols=85 Identities=25% Similarity=0.459 Sum_probs=79.6
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999988 9999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++.++.
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 987653
No 114
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=5.2e-18 Score=141.55 Aligned_cols=81 Identities=21% Similarity=0.424 Sum_probs=76.9
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccC--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIG--EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
..++|||+|||+++|+++|+++|++|| .|..|+|+.++.+|+++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 011718 180 SET 182 (479)
Q Consensus 180 a~~ 182 (479)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 115
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=129.80 Aligned_cols=84 Identities=25% Similarity=0.498 Sum_probs=76.8
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCC-C-CCC-CceEEEEeCChHHHHHHHHhc-CCceecCeEEEEE
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG-K-SGK-RDFGFIHYAERSSALKAIKDT-EKYEIDGQVLEVA 353 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~-~-~~~-~g~~fV~f~~~~~a~~a~~~~-~~~~~~g~~i~v~ 353 (479)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ . .+. +|||||+|.+.++|.+||..| |++.|+|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34689999999999999999999999999999999988 3 344 899999999999999999999 9999999999999
Q ss_pred ecCCCCCC
Q 011718 354 LARPQTNK 361 (479)
Q Consensus 354 ~a~~~~~~ 361 (479)
++.++...
T Consensus 93 ~a~~~~~~ 100 (107)
T 2cph_A 93 WADSEVTV 100 (107)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99987654
No 116
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=4.4e-18 Score=131.30 Aligned_cols=83 Identities=20% Similarity=0.437 Sum_probs=74.8
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecC-CCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDK-DSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~-~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
.....++|||+|||+++|+++|+++|++|| |.+|+|+.++ .+++++|||||+|.+.++|.+|| .|++..|.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999998 58999999999999999999999 89999999999999
Q ss_pred eccCCC
Q 011718 178 SMSETN 183 (479)
Q Consensus 178 ~~a~~~ 183 (479)
.++.++
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998764
No 117
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=136.75 Aligned_cols=84 Identities=29% Similarity=0.489 Sum_probs=77.4
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
...++|||+|||+++|+++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 346899999999999999999999999999999999887643 899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011718 356 RPQTNK 361 (479)
Q Consensus 356 ~~~~~~ 361 (479)
.++..+
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987654
No 118
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=9e-18 Score=126.23 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=73.0
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||..+++++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 357999999999999999999999999999999998864 44 8999999999999999999999999999999999998
Q ss_pred CC
Q 011718 357 PQ 358 (479)
Q Consensus 357 ~~ 358 (479)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 119
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1.8e-17 Score=126.93 Aligned_cols=81 Identities=17% Similarity=0.412 Sum_probs=75.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
+++|||+|||..+++++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+..|++..|+|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47899999999999999999999999999999998875 34 89999999999999999999999999999999999988
Q ss_pred CCC
Q 011718 358 QTN 360 (479)
Q Consensus 358 ~~~ 360 (479)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 754
No 120
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=6.2e-18 Score=136.77 Aligned_cols=86 Identities=26% Similarity=0.444 Sum_probs=80.3
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
......++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eccCCC
Q 011718 178 SMSETN 183 (479)
Q Consensus 178 ~~a~~~ 183 (479)
.++.++
T Consensus 97 ~~a~~~ 102 (126)
T 3ex7_B 97 DWCFVR 102 (126)
T ss_dssp EESEES
T ss_pred EEecCC
Confidence 998653
No 121
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.6e-18 Score=131.11 Aligned_cols=83 Identities=23% Similarity=0.457 Sum_probs=76.7
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+++|+++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 35899999999999999999999999999999999887533 8999999999999999999999999999999999998
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
++...
T Consensus 91 ~~~~~ 95 (102)
T 1x5s_A 91 KSSDN 95 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 122
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.6e-18 Score=130.41 Aligned_cols=81 Identities=23% Similarity=0.339 Sum_probs=74.1
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.+...++|||+|||+++|+++|+++|++||. +.|+|+.++ +++++|||||+|.+.++|++||+ +|+..|.++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999999999999999999994 599999998 79999999999999999999995 79999999999998
Q ss_pred ccCC
Q 011718 179 MSET 182 (479)
Q Consensus 179 ~a~~ 182 (479)
++..
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8764
No 123
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=1e-17 Score=130.80 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=78.1
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecC---eEEEEEe
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDG---QVLEVAL 354 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g---~~i~v~~ 354 (479)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+||..||+..|.+ +.|+|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 36899999999999999999999999999999999988766 8999999999999999999999999998 9999999
Q ss_pred cCCCCCCC
Q 011718 355 ARPQTNKR 362 (479)
Q Consensus 355 a~~~~~~~ 362 (479)
+.++..+.
T Consensus 94 a~~~~~~~ 101 (105)
T 2dnh_A 94 ADTDKESG 101 (105)
T ss_dssp SCSSCCCS
T ss_pred CccCcccC
Confidence 99886643
No 124
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=129.93 Aligned_cols=84 Identities=20% Similarity=0.379 Sum_probs=77.5
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcC------CceecCeEE
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTE------KYEIDGQVL 350 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~------~~~~~g~~i 350 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..+ . +|||||+|.+.++|.+||..|| ++.|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l 93 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL 93 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEE
Confidence 3689999999999999999999999999999999988763 3 8999999999999999999999 999999999
Q ss_pred EEEecCCCCCCC
Q 011718 351 EVALARPQTNKR 362 (479)
Q Consensus 351 ~v~~a~~~~~~~ 362 (479)
+|.++.++....
T Consensus 94 ~v~~a~~~~~~~ 105 (111)
T 1x4h_A 94 KVDLAVTRDEAA 105 (111)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEECCCCccCC
Confidence 999999876543
No 125
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=4.8e-18 Score=144.06 Aligned_cols=131 Identities=16% Similarity=0.213 Sum_probs=76.2
Q ss_pred EEeCChhHHHHHHHHhhcCccccCCCCceeeecCCCCC-------------CCchhhhhhccceEEecCCCCCCCHHHHH
Q 011718 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST-------------PDHSAAAASQVKALYVKNLPENTTTKQLK 298 (479)
Q Consensus 232 v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 298 (479)
..|...+++..++..+........++.+...+...... ....+......++|||+|||+.+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 45666677777777776655554455554444221100 00011122335789999999999999999
Q ss_pred HHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCCCC
Q 011718 299 ELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362 (479)
Q Consensus 299 ~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~~~ 362 (479)
.+|++||.|..|.|+.++. +. +|||||+|.+.++|.+||..||+..|+|+.|.|.|+.++....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 9999999999999998865 33 8999999999999999999999999999999999998776543
No 126
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.8e-18 Score=129.07 Aligned_cols=82 Identities=32% Similarity=0.524 Sum_probs=75.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC--C--C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS--G--K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~--~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
.++|||+|||+++|+++|+++|++||.|..|.|..+.. + . +|||||+|.+.++|.+|+..||++.|+|+.|.|.+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 57999999999999999999999999999999998765 2 3 89999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 011718 355 ARPQTNK 361 (479)
Q Consensus 355 a~~~~~~ 361 (479)
+.++...
T Consensus 85 a~~~~~~ 91 (98)
T 2cpf_A 85 SERATKP 91 (98)
T ss_dssp SSCSSCC
T ss_pred ccCCCCC
Confidence 9887654
No 127
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.8e-18 Score=131.39 Aligned_cols=84 Identities=18% Similarity=0.255 Sum_probs=78.4
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+.+|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34567899999999999999999999999999998999888999999999999999999999999999999999999999
Q ss_pred cCCC
Q 011718 180 SETN 183 (479)
Q Consensus 180 a~~~ 183 (479)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 128
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.3e-18 Score=130.74 Aligned_cols=83 Identities=31% Similarity=0.580 Sum_probs=76.9
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 358999999999999999999999999999999998864 44 8999999999999999999999999999999999999
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
++...
T Consensus 94 ~~~~~ 98 (103)
T 2cq0_A 94 PSTNS 98 (103)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87654
No 129
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=8.2e-18 Score=138.56 Aligned_cols=86 Identities=26% Similarity=0.456 Sum_probs=80.7
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||.++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++..+.
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987643
No 130
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-18 Score=125.71 Aligned_cols=76 Identities=29% Similarity=0.510 Sum_probs=73.1
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
++|||+|||+++|+++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+|+..++ ..|.|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999999899999999999999999999999988 9999999999876
No 131
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=1e-17 Score=133.05 Aligned_cols=84 Identities=25% Similarity=0.434 Sum_probs=77.3
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+++++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||..||++.|+|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 357999999999999999999999999999999998874 44 8999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011718 357 PQTNKR 362 (479)
Q Consensus 357 ~~~~~~ 362 (479)
++....
T Consensus 104 ~~~~~~ 109 (115)
T 2cpz_A 104 SKNDSK 109 (115)
T ss_dssp CSCCCC
T ss_pred CCCcCC
Confidence 876543
No 132
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6e-18 Score=131.74 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=77.2
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCC-CCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDS-GESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
...++|||+|||+.+|+++|+++|++|| |..|+|+.++.+ ++++|||||+|.+.++|.+|| .|++..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999887 999999999999999999999 8999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87643
No 133
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-18 Score=134.59 Aligned_cols=83 Identities=24% Similarity=0.524 Sum_probs=77.9
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+.|++ .|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred cCCC
Q 011718 180 SETN 183 (479)
Q Consensus 180 a~~~ 183 (479)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8653
No 134
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.2e-18 Score=129.72 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=71.4
Q ss_pred ccceEEecCCCC-CCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCC--ceecCeEEEEEec
Q 011718 279 QVKALYVKNLPE-NTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK--YEIDGQVLEVALA 355 (479)
Q Consensus 279 ~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~--~~~~g~~i~v~~a 355 (479)
++++|||+|||+ .+|+++|+++|++||.|.+|.|++++ +||||+|.+.++|.+|+..|++ ..|.|++|.|.+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 368999999999 99999999999999999999998765 8999999999999999999885 4699999999999
Q ss_pred CCCCC
Q 011718 356 RPQTN 360 (479)
Q Consensus 356 ~~~~~ 360 (479)
+....
T Consensus 90 ~~~~~ 94 (102)
T 1x4d_A 90 QKYKR 94 (102)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 97654
No 135
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=128.87 Aligned_cols=81 Identities=22% Similarity=0.435 Sum_probs=75.2
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC--CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS--GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
..++|||+|||+.+|+++|+++|++|| |..|.|+.+.. +. +|||||+|.+.++|.+|| .||+..|+|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 358999999999999999999999999 99999999876 34 899999999999999999 89999999999999999
Q ss_pred CCCCCC
Q 011718 356 RPQTNK 361 (479)
Q Consensus 356 ~~~~~~ 361 (479)
.++...
T Consensus 92 ~~~~~~ 97 (104)
T 1wi8_A 92 DQAQDK 97 (104)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987654
No 136
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=1.1e-17 Score=140.55 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=80.3
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|++||+.|++..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 011718 179 MSETN 183 (479)
Q Consensus 179 ~a~~~ 183 (479)
++.+.
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 99753
No 137
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.5e-17 Score=124.41 Aligned_cols=78 Identities=28% Similarity=0.487 Sum_probs=72.7
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+++++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.+|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35899999999999999999999999999999998885543 8999999999999999999999999999999999985
No 138
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-18 Score=130.55 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=72.3
Q ss_pred CCCCeEEECCCCC-CCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC--CCCCCeeee
Q 011718 101 PHGSEVFIGGLPK-DASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSK--DFKGKTIRC 177 (479)
Q Consensus 101 ~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~--~~~g~~l~v 177 (479)
.++++|||+|||+ ++|+++|+++|++||.|.+|+|+++ ++||||+|.+.++|.+|++.|++. .|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 9999999999999999999999764 579999999999999999998865 499999999
Q ss_pred eccCCCcee
Q 011718 178 SMSETNNRL 186 (479)
Q Consensus 178 ~~a~~~~~l 186 (479)
.++.....|
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999876554
No 139
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=5.4e-18 Score=127.78 Aligned_cols=82 Identities=18% Similarity=0.421 Sum_probs=76.6
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCC-ceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE-SKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~-~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
..++|||+|||.++|+++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999887665 8999999999999999999999999999999999988
Q ss_pred CCC
Q 011718 181 ETN 183 (479)
Q Consensus 181 ~~~ 183 (479)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 140
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=128.91 Aligned_cols=84 Identities=23% Similarity=0.434 Sum_probs=77.3
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999998864 389999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 997653
No 141
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8.2e-18 Score=131.09 Aligned_cols=84 Identities=14% Similarity=0.325 Sum_probs=77.6
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhc-CCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCce-ecCeEEEEEec
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQR-HGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYE-IDGQVLEVALA 355 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~-~~g~~i~v~~a 355 (479)
..++|||+|||+++|+++|+++|++ ||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|++.. |+|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 3589999999999999999999999 9999999999988666 8999999999999999999999999 99999999999
Q ss_pred CCCCCCC
Q 011718 356 RPQTNKR 362 (479)
Q Consensus 356 ~~~~~~~ 362 (479)
.++....
T Consensus 88 ~~~~~~~ 94 (104)
T 2dhg_A 88 IPKASRV 94 (104)
T ss_dssp CCCCSCC
T ss_pred cCCCcCC
Confidence 8776543
No 142
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.8e-17 Score=127.97 Aligned_cols=77 Identities=14% Similarity=0.295 Sum_probs=72.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecC-----eEEEEEe
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG-----QVLEVAL 354 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g-----~~i~v~~ 354 (479)
.++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||++.|+| +.|+|.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 589999999999999999999999999999999886 799999999999999999999999999 9999999
Q ss_pred cCCCCCC
Q 011718 355 ARPQTNK 361 (479)
Q Consensus 355 a~~~~~~ 361 (479)
+.++...
T Consensus 90 a~~~~~~ 96 (108)
T 1x4c_A 90 DGPRSPS 96 (108)
T ss_dssp SSCCSCC
T ss_pred CCCCCCC
Confidence 9986543
No 143
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1e-17 Score=135.46 Aligned_cols=83 Identities=17% Similarity=0.307 Sum_probs=76.5
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+||..||+..|+|+.|.|.++.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 357999999999999999999999999999999998864 34 8999999999999999999999999999999999998
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
++...
T Consensus 101 ~~~~~ 105 (126)
T 3ex7_B 101 VRGPP 105 (126)
T ss_dssp ESSSC
T ss_pred CCCCC
Confidence 77554
No 144
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=126.66 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=72.7
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhc--CCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT--EKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~--~~~~~~g~~i~v~~a~ 356 (479)
++++|||+|||+.+|+++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..| ++..|.|+.|.|.+++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 3689999999999999999999999999999999876 499999999999999999977 4678999999999999
Q ss_pred CCCCCC
Q 011718 357 PQTNKR 362 (479)
Q Consensus 357 ~~~~~~ 362 (479)
++....
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 876544
No 145
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=131.22 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=77.3
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++. +.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 44678999999999999999999999999999999999974 99999999999999999999999999999999999999
Q ss_pred cCC
Q 011718 180 SET 182 (479)
Q Consensus 180 a~~ 182 (479)
+..
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 864
No 146
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-17 Score=129.04 Aligned_cols=81 Identities=23% Similarity=0.467 Sum_probs=73.9
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|..+.. .++||||+|.+.++|.+||..||++.|+|+.|+|.++.++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 358999999999999999999999999999999976542 3799999999999999999999999999999999999876
Q ss_pred CC
Q 011718 359 TN 360 (479)
Q Consensus 359 ~~ 360 (479)
..
T Consensus 100 ~~ 101 (109)
T 1x4a_A 100 RG 101 (109)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 147
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=130.95 Aligned_cols=82 Identities=23% Similarity=0.432 Sum_probs=75.8
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|++..|+|+.|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 346899999999999999999999999999999999886543 899999999999999999999999999999999999
Q ss_pred CCCC
Q 011718 356 RPQT 359 (479)
Q Consensus 356 ~~~~ 359 (479)
.++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 148
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=127.29 Aligned_cols=79 Identities=27% Similarity=0.406 Sum_probs=74.7
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||++.|+|+.|+|.+++.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 46899999999999999999999999999999999988766 89999999999999999999999999999999999864
No 149
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=130.29 Aligned_cols=80 Identities=23% Similarity=0.360 Sum_probs=72.5
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc--CCCCCCCeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC--SKDFKGKTIR 176 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~--~~~~~g~~l~ 176 (479)
..+++++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|+ +..|.|+.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456889999999999999999999999999999999865 7899999999999999999887 4689999999
Q ss_pred eeccCCCc
Q 011718 177 CSMSETNN 184 (479)
Q Consensus 177 v~~a~~~~ 184 (479)
|.+++.+.
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99997643
No 150
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=4e-18 Score=138.58 Aligned_cols=83 Identities=19% Similarity=0.352 Sum_probs=78.0
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeE--EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC----CCCCCe
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFE--VGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSK----DFKGKT 174 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~----~~~g~~ 174 (479)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+. +|.+|+..||+. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 35679999999999999999999999999976 99999999999999999999999 999999999999 999999
Q ss_pred eeeeccCCCc
Q 011718 175 IRCSMSETNN 184 (479)
Q Consensus 175 l~v~~a~~~~ 184 (479)
|+|.++.+..
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998654
No 151
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=128.17 Aligned_cols=86 Identities=34% Similarity=0.520 Sum_probs=79.0
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|++.++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999753 7899999999999999999999999999999999
Q ss_pred ccCCCceeeccC
Q 011718 179 MSETNNRLFIGN 190 (479)
Q Consensus 179 ~a~~~~~l~v~n 190 (479)
++.++..+.+++
T Consensus 85 ~a~~~~~~~~g~ 96 (99)
T 2cpj_A 85 FACHSASLTSGP 96 (99)
T ss_dssp ESSCCSCCCCCC
T ss_pred EcCCCCCCCCCC
Confidence 999988877765
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.8e-18 Score=130.89 Aligned_cols=84 Identities=25% Similarity=0.438 Sum_probs=74.7
Q ss_pred CCCCCeEEECCCCCC-CCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC--CCCCCCeee
Q 011718 100 PPHGSEVFIGGLPKD-ASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS--KDFKGKTIR 176 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~--~~~~g~~l~ 176 (479)
..++++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|++ ..|.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446889999999998 99999999999999999999964 478999999999999999998864 569999999
Q ss_pred eeccCCCceeecc
Q 011718 177 CSMSETNNRLFIG 189 (479)
Q Consensus 177 v~~a~~~~~l~v~ 189 (479)
|.++..+..+.++
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999887776544
No 153
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=129.38 Aligned_cols=83 Identities=18% Similarity=0.356 Sum_probs=76.5
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|+++.. .++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 345678999999999999999999999999999999999864 368999999999999999999999999999999999
Q ss_pred ccCCC
Q 011718 179 MSETN 183 (479)
Q Consensus 179 ~a~~~ 183 (479)
++.+.
T Consensus 89 ~a~~~ 93 (103)
T 2cqi_A 89 WATTP 93 (103)
T ss_dssp ECCCT
T ss_pred ECCCC
Confidence 98764
No 154
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=129.07 Aligned_cols=82 Identities=27% Similarity=0.338 Sum_probs=75.3
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeE-EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFE-VGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
....++|||+|||+++|+++|+++|++||.|.. |+|+.+ .+++++|||||+|.+.++|.+||.. ++..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999987 888888 6799999999999999999999987 9999999999998
Q ss_pred ccCCC
Q 011718 179 MSETN 183 (479)
Q Consensus 179 ~a~~~ 183 (479)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 88654
No 155
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=125.34 Aligned_cols=78 Identities=27% Similarity=0.462 Sum_probs=73.2
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||+..|+|+.|+|.+|+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 3589999999999999999999999999999999998763 3 8999999999999999999999999999999999985
No 156
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=7.4e-18 Score=132.08 Aligned_cols=85 Identities=27% Similarity=0.479 Sum_probs=75.0
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
......++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||..+ +..|.|+.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999875 58899999999
Q ss_pred eccCCC
Q 011718 178 SMSETN 183 (479)
Q Consensus 178 ~~a~~~ 183 (479)
.++.++
T Consensus 99 ~~a~~~ 104 (109)
T 2rs2_A 99 KVAFPR 104 (109)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 998754
No 157
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=125.87 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=74.0
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..+ . +|||||+|.+.++|.+|+..||+..|+|+.|+|.+++
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 4689999999999999999999999999999999988764 4 8999999999999999999999999999999999987
Q ss_pred C
Q 011718 357 P 357 (479)
Q Consensus 357 ~ 357 (479)
+
T Consensus 94 ~ 94 (95)
T 2cqc_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 158
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=129.94 Aligned_cols=83 Identities=22% Similarity=0.415 Sum_probs=75.7
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+++|+++|+++|++||.|..|+|..+ +.+++||||+|.+.++|.+||+.||+..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3446789999999999999999999999999999999654 5689999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++....
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 997643
No 159
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=2.3e-17 Score=132.88 Aligned_cols=85 Identities=20% Similarity=0.323 Sum_probs=79.6
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 987644
No 160
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=125.62 Aligned_cols=82 Identities=20% Similarity=0.399 Sum_probs=76.6
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+++|+++|+++|+.| .|..|+|+++ .+++++|||||+|.+.++|.+||. ||+..|.|+.|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 679999999999999999999999 99999999999999
Q ss_pred ccCCC
Q 011718 179 MSETN 183 (479)
Q Consensus 179 ~a~~~ 183 (479)
++.++
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98764
No 161
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=131.68 Aligned_cols=88 Identities=19% Similarity=0.306 Sum_probs=79.3
Q ss_pred CCCCCeEEECCCCCCCCHHHHH---HhhcccCceeEEEEeecCCCC---CceeEEEEEecCHHHHHHHHHHhcCCCCCCC
Q 011718 100 PPHGSEVFIGGLPKDASEEDLR---DLCEPIGEVFEVGLVKDKDSG---ESKGFAFVAFRSKEVAKRAIDELCSKDFKGK 173 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~---~~f~~~G~i~~v~i~~~~~~g---~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~ 173 (479)
....++|||+|||+++|+++|+ ++|++||.|..|+|+++..++ +++|||||+|.+.++|++||+.||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 999999999999999887644 5669999999999999999999999999999
Q ss_pred eeeeeccCCCceee
Q 011718 174 TIRCSMSETNNRLF 187 (479)
Q Consensus 174 ~l~v~~a~~~~~l~ 187 (479)
.|+|.++.++...+
T Consensus 92 ~l~V~~a~~k~~~~ 105 (111)
T 2cpi_A 92 TLKASLGTTKYCSY 105 (111)
T ss_dssp EEEEESCCCCSCSS
T ss_pred EEEEEecccccccc
Confidence 99999998876433
No 162
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=127.92 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=75.4
Q ss_pred CCCCeEEECCCCCCCCHHHHH----HhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeee
Q 011718 101 PHGSEVFIGGLPKDASEEDLR----DLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~ 176 (479)
...++|||+|||+.+|+++|+ ++|++||.|.+|+|+.++.+ ++||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999998764 88999999999999999999999999999999
Q ss_pred eeccCCCc
Q 011718 177 CSMSETNN 184 (479)
Q Consensus 177 v~~a~~~~ 184 (479)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997653
No 163
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=127.28 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=71.5
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCC--ceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK--YEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~--~~~~g~~i~v~~a~ 356 (479)
++++|||+|||+.+++++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..|++ ..|+|++|.|.++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 3589999999999999999999999999999999875 48999999999999999998865 45999999999998
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
.+...
T Consensus 90 ~~~~~ 94 (104)
T 1wex_A 90 SKRIT 94 (104)
T ss_dssp SSSCC
T ss_pred Ccccc
Confidence 87654
No 164
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=8.5e-18 Score=136.13 Aligned_cols=82 Identities=23% Similarity=0.260 Sum_probs=76.4
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCc---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGE---VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
.....++|||+|||+++|+++|+++|++||. |..|+|+.++. ++++|||||+|.+.++|++||+ ||+..|.|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999988 9999999999999999999998 99999999999
Q ss_pred eeeccCC
Q 011718 176 RCSMSET 182 (479)
Q Consensus 176 ~v~~a~~ 182 (479)
+|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998753
No 165
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=128.62 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=72.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
.++|||+|||+++|+++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+||. ++++.|+|+.|.|.++..
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 5799999999999999999999999999999999988766 9999999999999999999 899999999999998765
No 166
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.5e-17 Score=128.65 Aligned_cols=81 Identities=25% Similarity=0.522 Sum_probs=74.7
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCC--------CC
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF--------KG 172 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~--------~g 172 (479)
...++|||+|||+.+|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+||..||+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999998 799999999999999999999999999999 46
Q ss_pred CeeeeeccCC
Q 011718 173 KTIRCSMSET 182 (479)
Q Consensus 173 ~~l~v~~a~~ 182 (479)
+.|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 7788877764
No 167
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=127.64 Aligned_cols=83 Identities=29% Similarity=0.536 Sum_probs=77.0
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||. ++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4467899999999999999999999999999999999999999999999999999999999997 57789999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 97653
No 168
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=131.28 Aligned_cols=82 Identities=26% Similarity=0.424 Sum_probs=76.4
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
...++|||+|||..+|+++|+++|++||.|..|.|..+..+.+|||||+|.+.++|.+|+..|++..|+|+.|+|.++.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 34689999999999999999999999999999999988765689999999999999999999999999999999999987
Q ss_pred CC
Q 011718 358 QT 359 (479)
Q Consensus 358 ~~ 359 (479)
+.
T Consensus 107 ~~ 108 (109)
T 2err_A 107 RV 108 (109)
T ss_dssp SC
T ss_pred Cc
Confidence 63
No 169
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=123.79 Aligned_cols=80 Identities=19% Similarity=0.356 Sum_probs=74.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC--C-CCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS--G-KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~-~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
.++|||+|||+++|+++|+++|++||.|..|.|+.+.. + .+|||||+|.+.++|.+|+..||+..|+|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 47899999999999999999999999999999988775 2 37999999999999999999999999999999999998
Q ss_pred CCC
Q 011718 357 PQT 359 (479)
Q Consensus 357 ~~~ 359 (479)
++.
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 170
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=3.4e-18 Score=129.42 Aligned_cols=80 Identities=31% Similarity=0.643 Sum_probs=74.1
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCCC
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN 183 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~~ 183 (479)
++|||+|||.++|+++|+++|++||.|..|++++++.++.++|||||+|.+.+ |.+|+..||+..|.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999998764
Q ss_pred c
Q 011718 184 N 184 (479)
Q Consensus 184 ~ 184 (479)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 171
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=129.91 Aligned_cols=83 Identities=25% Similarity=0.393 Sum_probs=76.3
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEE--------EEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCe
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVT--------KVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQ 348 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~ 348 (479)
..++|||+|||+.+|+++|+++|++||.|. .|.|+.++. +. +|||||+|.+.++|.+||..||++.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 368999999999999999999999999999 699998854 44 89999999999999999999999999999
Q ss_pred EEEEEecCCCCCC
Q 011718 349 VLEVALARPQTNK 361 (479)
Q Consensus 349 ~i~v~~a~~~~~~ 361 (479)
.|+|.++.++...
T Consensus 94 ~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 94 KLKVSLARKKPPM 106 (113)
T ss_dssp ECEEECSSCCCCS
T ss_pred EEEEEECCCCCCC
Confidence 9999999987653
No 172
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=3.8e-17 Score=128.68 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=75.9
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 358999999999999999999999999999999998865 34 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 011718 357 PQTN 360 (479)
Q Consensus 357 ~~~~ 360 (479)
++..
T Consensus 105 ~~~~ 108 (110)
T 1oo0_B 105 VKGP 108 (110)
T ss_dssp ESSC
T ss_pred cCCC
Confidence 7654
No 173
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=123.40 Aligned_cols=77 Identities=23% Similarity=0.579 Sum_probs=72.1
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|||+++|+++|+++|++||.|..|.|. ++||||+|.+.++|.+|+..||+..|+|+.|+|.++.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 35899999999999999999999999999999998 389999999999999999999999999999999999987
Q ss_pred CCC
Q 011718 359 TNK 361 (479)
Q Consensus 359 ~~~ 361 (479)
...
T Consensus 81 ~~~ 83 (90)
T 2dnq_A 81 SKA 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 174
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=2.7e-17 Score=128.58 Aligned_cols=83 Identities=25% Similarity=0.438 Sum_probs=76.3
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCcee---cCeEEEEE
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEI---DGQVLEVA 353 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~---~g~~i~v~ 353 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..+ .|+.|+|.
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 91 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK 91 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEE
Confidence 358999999999999999999999999999999999876 33 89999999999999999999999887 89999999
Q ss_pred ecCCCCCC
Q 011718 354 LARPQTNK 361 (479)
Q Consensus 354 ~a~~~~~~ 361 (479)
++.++...
T Consensus 92 ~a~~~~~~ 99 (106)
T 2dgp_A 92 PADSESRG 99 (106)
T ss_dssp ECCCCSCC
T ss_pred ECCccccc
Confidence 99987653
No 175
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=130.45 Aligned_cols=85 Identities=27% Similarity=0.434 Sum_probs=78.5
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCc-eeEEEEe-ecCCCCCceeEEEEEecCHHHHHHHHHHhc--CCCCCCCee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGE-VFEVGLV-KDKDSGESKGFAFVAFRSKEVAKRAIDELC--SKDFKGKTI 175 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~v~i~-~~~~~g~~~g~afV~F~~~e~a~~Al~~l~--~~~~~g~~l 175 (479)
..+.++|||+|||+.+|+++|+++|++||. |..|.|+ .++.++.++|||||+|.+.++|.+|+..|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred eeeccCCCc
Q 011718 176 RCSMSETNN 184 (479)
Q Consensus 176 ~v~~a~~~~ 184 (479)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998654
No 176
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=1.9e-17 Score=125.83 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=74.9
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|||+++++++|+++|++||.|..|.|..+....+|||||+|.+.++|.+|+..||++.|+|+.|+|.++.+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 35899999999999999999999999999999998853223899999999999999999999999999999999999887
Q ss_pred CC
Q 011718 359 TN 360 (479)
Q Consensus 359 ~~ 360 (479)
..
T Consensus 87 ~~ 88 (92)
T 2dgv_A 87 SG 88 (92)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 177
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=7.8e-18 Score=129.77 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=74.5
Q ss_pred cceEEecCCCC------CCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecC-eEE
Q 011718 280 VKALYVKNLPE------NTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDG-QVL 350 (479)
Q Consensus 280 ~~~l~v~nl~~------~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g-~~i 350 (479)
.++|||+|||+ .+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57899999999 999999999999999999999999887 44 9999999999999999999999999999 999
Q ss_pred EEEecCCC
Q 011718 351 EVALARPQ 358 (479)
Q Consensus 351 ~v~~a~~~ 358 (479)
+|.++.++
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 178
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=130.01 Aligned_cols=84 Identities=24% Similarity=0.439 Sum_probs=76.6
Q ss_pred hhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 277 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||.. +++.|+|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34468999999999999999999999999999999999865 33 89999999999999999997 99999999999999
Q ss_pred cCCCCCC
Q 011718 355 ARPQTNK 361 (479)
Q Consensus 355 a~~~~~~ 361 (479)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9988653
No 179
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=6.8e-18 Score=137.59 Aligned_cols=84 Identities=29% Similarity=0.427 Sum_probs=79.3
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCC
Q 011718 180 SETN 183 (479)
Q Consensus 180 a~~~ 183 (479)
++..
T Consensus 124 a~~~ 127 (135)
T 2lea_A 124 ARYG 127 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 180
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=125.52 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=70.6
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc--CCCCCCCeeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC--SKDFKGKTIRC 177 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~--~~~~~g~~l~v 177 (479)
.+++++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|+ +..|.|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999999999998764 7899999999999999999774 56799999999
Q ss_pred eccCCC
Q 011718 178 SMSETN 183 (479)
Q Consensus 178 ~~a~~~ 183 (479)
.++..+
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 999754
No 181
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=123.92 Aligned_cols=74 Identities=16% Similarity=0.332 Sum_probs=68.6
Q ss_pred CCeEEECCCCCCC------CHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCC-ee
Q 011718 103 GSEVFIGGLPKDA------SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGK-TI 175 (479)
Q Consensus 103 ~~~l~V~nLp~~~------te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~-~l 175 (479)
+++|||+|||+.+ |+++|+++|++||.|.+|+|. +.+++++|||||+|.+.++|.+|++.||+..|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999987 45789999999999999999999999999999999 88
Q ss_pred eee
Q 011718 176 RCS 178 (479)
Q Consensus 176 ~v~ 178 (479)
+|.
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 873
No 182
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=126.15 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=71.0
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC--CCCCCeeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSK--DFKGKTIRC 177 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~--~~~g~~l~v 177 (479)
.+++++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++. .|.|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998753 789999999999999999988764 499999999
Q ss_pred eccCCCc
Q 011718 178 SMSETNN 184 (479)
Q Consensus 178 ~~a~~~~ 184 (479)
.++..+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9997653
No 183
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=129.94 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=72.9
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcC--CceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE--KYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~--~~~~~g~~i~v~~a~ 356 (479)
++++|||+|||+.+|+++|+++|++||.|.+|.|++++ |||||+|.+.++|.+|+..|+ +..|.|++|+|.+++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k----G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG----TEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----CEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 36899999999999999999999999999999998764 999999999999999999887 468999999999998
Q ss_pred CCCCCC
Q 011718 357 PQTNKR 362 (479)
Q Consensus 357 ~~~~~~ 362 (479)
++....
T Consensus 106 ~k~~~~ 111 (119)
T 2ad9_A 106 HKELKT 111 (119)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 876544
No 184
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=7e-17 Score=126.50 Aligned_cols=84 Identities=23% Similarity=0.450 Sum_probs=73.8
Q ss_pred hhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 277 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+..+ ++.|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 33468999999999999999999999999999999999875 44 899999999999999999976 5899999999999
Q ss_pred cCCCCCC
Q 011718 355 ARPQTNK 361 (479)
Q Consensus 355 a~~~~~~ 361 (479)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987543
No 185
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=131.10 Aligned_cols=83 Identities=20% Similarity=0.405 Sum_probs=74.9
Q ss_pred CCCCCeEEECCCCCCCCHHHHH----HhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLR----DLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
..++++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4567899999999999999876 6999999999998754 47899999999999999999999999999999999
Q ss_pred eeeccCCCce
Q 011718 176 RCSMSETNNR 185 (479)
Q Consensus 176 ~v~~a~~~~~ 185 (479)
+|.++..+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999986543
No 186
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=129.55 Aligned_cols=81 Identities=15% Similarity=0.275 Sum_probs=74.7
Q ss_pred CCCCeEEECCCCCCC------CHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCC-
Q 011718 101 PHGSEVFIGGLPKDA------SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGK- 173 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~------te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~- 173 (479)
...++|||+|||+.+ |+++|+++|++||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..||+..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999988 46789999999999999999999999999999999
Q ss_pred eeeeeccCCC
Q 011718 174 TIRCSMSETN 183 (479)
Q Consensus 174 ~l~v~~a~~~ 183 (479)
.|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 187
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=4.3e-17 Score=126.65 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=74.4
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++|| |..|.|+.++. +. +|||||+|.+.++|.+|+ .||+..|+|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 358999999999999999999999996 99999998876 34 899999999999999999 899999999999999998
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
++...
T Consensus 92 ~~~~~ 96 (103)
T 2dng_A 92 GRKQD 96 (103)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87553
No 188
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=129.62 Aligned_cols=80 Identities=23% Similarity=0.390 Sum_probs=74.7
Q ss_pred cceEEecCCCCCCCHHHHH---HHHhcCCCEEEEEccCCCCC----C-CceEEEEeCChHHHHHHHHhcCCceecCeEEE
Q 011718 280 VKALYVKNLPENTTTKQLK---ELFQRHGEVTKVVTPPGKSG----K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~v~~~~~~~~----~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~ 351 (479)
.++|||+|||+.+++++|+ ++|++||.|..|.|+.+..+ . +|||||+|.+.++|.+||..||++.|+|+.|+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 5799999999999999999 99999999999999988752 2 69999999999999999999999999999999
Q ss_pred EEecCCCC
Q 011718 352 VALARPQT 359 (479)
Q Consensus 352 v~~a~~~~ 359 (479)
|.+|.++.
T Consensus 95 V~~a~~k~ 102 (111)
T 2cpi_A 95 ASLGTTKY 102 (111)
T ss_dssp EESCCCCS
T ss_pred EEeccccc
Confidence 99999875
No 189
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.2e-17 Score=132.83 Aligned_cols=80 Identities=25% Similarity=0.297 Sum_probs=75.2
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCc---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGE---VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~ 176 (479)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. ++++|||||+|.+.++|++||+ |++..|.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999999 89999999987 9999999999999999999998 899999999999
Q ss_pred eeccC
Q 011718 177 CSMSE 181 (479)
Q Consensus 177 v~~a~ 181 (479)
|.++.
T Consensus 92 V~~a~ 96 (118)
T 2db1_A 92 VFKSH 96 (118)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 98875
No 190
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=132.59 Aligned_cols=79 Identities=29% Similarity=0.433 Sum_probs=75.7
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 468999999999999999999999999999999999999999999999999999999999 8999999999999999764
No 191
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.6e-17 Score=122.09 Aligned_cols=77 Identities=23% Similarity=0.419 Sum_probs=71.9
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|.+ +||||+|.+.++|.+|+..||++.|+|+.|+|.++.++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 358999999999999999999999999999999984 69999999999999999999999999999999999887
Q ss_pred CCC
Q 011718 359 TNK 361 (479)
Q Consensus 359 ~~~ 361 (479)
...
T Consensus 83 ~~~ 85 (92)
T 2dgt_A 83 LRT 85 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 553
No 192
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=4.4e-17 Score=127.63 Aligned_cols=78 Identities=26% Similarity=0.424 Sum_probs=74.1
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 36899999999999999999999999999999999888666 8999999999999999999999999999999999986
No 193
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-17 Score=134.67 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=75.7
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+++|+++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4466899999999999999999999999999987777777789999999999999999999998 999999999999999
Q ss_pred cCC
Q 011718 180 SET 182 (479)
Q Consensus 180 a~~ 182 (479)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 194
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=127.91 Aligned_cols=82 Identities=23% Similarity=0.449 Sum_probs=75.5
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||.. +++.|+|+.|.|.++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence 358999999999999999999999999999999999865 34 89999999999999999998 9999999999999999
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
++...
T Consensus 94 ~~~~~ 98 (105)
T 2dh8_A 94 PRGMQ 98 (105)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87653
No 195
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=124.83 Aligned_cols=79 Identities=28% Similarity=0.540 Sum_probs=71.5
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
..++|||+|||+.+|+++|+++|++||.| .++.+..+. +|||||+|.+.++|.+||..||++.|+|+.|+|.++.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 36899999999999999999999999987 566665555 89999999999999999999999999999999999988
Q ss_pred CCC
Q 011718 358 QTN 360 (479)
Q Consensus 358 ~~~ 360 (479)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 196
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=128.34 Aligned_cols=81 Identities=17% Similarity=0.320 Sum_probs=75.4
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
.+++|||+|||+.+++++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 357899999999999999999999999999999998876 34 8999999999999999999999999999999999998
Q ss_pred CCC
Q 011718 357 PQT 359 (479)
Q Consensus 357 ~~~ 359 (479)
++.
T Consensus 102 ~~~ 104 (106)
T 1p27_B 102 VRG 104 (106)
T ss_dssp ESS
T ss_pred CCC
Confidence 764
No 197
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=131.68 Aligned_cols=81 Identities=27% Similarity=0.477 Sum_probs=76.7
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|+|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 36899999999999999999999999999999999999999999999999999999999987 99999999999999986
Q ss_pred Cc
Q 011718 183 NN 184 (479)
Q Consensus 183 ~~ 184 (479)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 198
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.9e-17 Score=122.08 Aligned_cols=78 Identities=31% Similarity=0.555 Sum_probs=72.3
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||.++|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34577899999999999999999999999999999997 5799999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++.++.
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 997654
No 199
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=130.66 Aligned_cols=82 Identities=16% Similarity=0.336 Sum_probs=75.6
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
...++|||+|||+++++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|| .||++.|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 44689999999999999999999999999999999988863 4 899999999999999999 89999999999999999
Q ss_pred CCCCC
Q 011718 356 RPQTN 360 (479)
Q Consensus 356 ~~~~~ 360 (479)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87644
No 200
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.8e-18 Score=132.71 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=75.8
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCce-eEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEV-FEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
+...++|||+|||+++|+++|+++|+.||.| ..|+|+.++ +++++|||||+|.+.++|.+||+. |+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4467899999999999999999999999999 899999998 799999999999999999999976 9999999999999
Q ss_pred ccCC
Q 011718 179 MSET 182 (479)
Q Consensus 179 ~a~~ 182 (479)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 201
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9e-17 Score=126.17 Aligned_cols=80 Identities=18% Similarity=0.393 Sum_probs=74.5
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|||+.+|+++|+.+|++||.|..|.|..++ |||||+|.+.++|.+|+..|+++.|+|+.|+|.++.++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK----GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC----CEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 35799999999999999999999999999999999874 89999999999999999999999999999999999987
Q ss_pred CCCC
Q 011718 359 TNKR 362 (479)
Q Consensus 359 ~~~~ 362 (479)
....
T Consensus 100 ~~~~ 103 (109)
T 1x4g_A 100 PDMT 103 (109)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 202
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=2.7e-17 Score=132.52 Aligned_cols=80 Identities=25% Similarity=0.493 Sum_probs=76.3
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|| .|++..|.|+.|+|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 468999999999999999999999999999999999889999999999999999999999 7999999999999999875
Q ss_pred C
Q 011718 183 N 183 (479)
Q Consensus 183 ~ 183 (479)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 203
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=129.65 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=76.2
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCc---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGE---VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
.....++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|++||. +++..|.|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999998 89999999988 9999999999999999999998 89999999999
Q ss_pred eeeccCC
Q 011718 176 RCSMSET 182 (479)
Q Consensus 176 ~v~~a~~ 182 (479)
+|.++..
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998763
No 204
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=6.7e-18 Score=127.59 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=68.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCC--CEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHG--EVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
.+|||+|||+++|+++|+++|++|| .|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999998865 44 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 011718 357 PQTN 360 (479)
Q Consensus 357 ~~~~ 360 (479)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8754
No 205
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=128.78 Aligned_cols=84 Identities=23% Similarity=0.442 Sum_probs=77.1
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
......++|||+|||..+|+++|+++|++||.|..|+|+.+. +.++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344577899999999999999999999999999999999885 358999999999999999999999999999999999
Q ss_pred eccCCC
Q 011718 178 SMSETN 183 (479)
Q Consensus 178 ~~a~~~ 183 (479)
.++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998764
No 206
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=5.4e-17 Score=126.39 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=70.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..+|||+|||+++|+++|+++|++|| .|..|.|.... .+|||||+|.+.++|.+||..||+..|+|+.|+|.++..+
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~--~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD--FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS--SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC--CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 47999999999999999999999999 89999996532 3699999999999999999999999999999999999754
No 207
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=7.6e-17 Score=121.69 Aligned_cols=78 Identities=22% Similarity=0.444 Sum_probs=72.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
.++|||+|||+++|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+ .||+..|+|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 57999999999999999999999999999999998864 34 899999999999999999 8999999999999999986
Q ss_pred C
Q 011718 358 Q 358 (479)
Q Consensus 358 ~ 358 (479)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 208
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=120.78 Aligned_cols=76 Identities=25% Similarity=0.471 Sum_probs=71.4
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|.+ +||||+|.+.++|.+|+..||++.|+|+.|+|.++.++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 358999999999999999999999999999999984 69999999999999999999999999999999999887
Q ss_pred CC
Q 011718 359 TN 360 (479)
Q Consensus 359 ~~ 360 (479)
..
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 209
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.5e-17 Score=123.44 Aligned_cols=77 Identities=23% Similarity=0.407 Sum_probs=72.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceec--CeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEID--GQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~--g~~i~v~~a~~ 357 (479)
.++|||+|||+++|+++|+++|++||.|..|.+..+ ++||||+|.+.++|.+|+..||++.|+ |+.|+|.++.+
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 579999999999999999999999999999999876 489999999999999999999999999 99999999998
Q ss_pred CCC
Q 011718 358 QTN 360 (479)
Q Consensus 358 ~~~ 360 (479)
+..
T Consensus 93 ~~~ 95 (97)
T 1why_A 93 GPS 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 210
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=127.79 Aligned_cols=77 Identities=26% Similarity=0.303 Sum_probs=72.2
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
.++|||+|||+++|+++|+++|+.| .|..|+|+.++. |+++|||||+|.+.++|.+|| .+|+..|.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 3589999999999999999999999 899999999976 999999999999999999999 6899999999999988754
No 211
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.1e-17 Score=123.56 Aligned_cols=80 Identities=18% Similarity=0.355 Sum_probs=73.2
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCC--CCeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK--GKTIR 176 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~--g~~l~ 176 (479)
...+.++|||+|||+.+|+++|+++|++||.|..|.+..+ +|||||+|.+.++|++|++.||+..|. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998753 789999999999999999999999999 99999
Q ss_pred eeccCCCc
Q 011718 177 CSMSETNN 184 (479)
Q Consensus 177 v~~a~~~~ 184 (479)
|.++.++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998653
No 212
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=121.66 Aligned_cols=77 Identities=35% Similarity=0.599 Sum_probs=71.5
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcC--CCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
...++|||+|||+.+|+++|+++|++| |.|..|.+.+ +||||+|.+.++|.+|+..||++.|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR------DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS------SEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC------CeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 346899999999999999999999999 9999998863 89999999999999999999999999999999999
Q ss_pred CCCCC
Q 011718 356 RPQTN 360 (479)
Q Consensus 356 ~~~~~ 360 (479)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88754
No 213
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-17 Score=135.02 Aligned_cols=81 Identities=27% Similarity=0.557 Sum_probs=76.6
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||..+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred c
Q 011718 180 S 180 (479)
Q Consensus 180 a 180 (479)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 214
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.5e-17 Score=125.58 Aligned_cols=80 Identities=26% Similarity=0.484 Sum_probs=73.4
Q ss_pred cCCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeee
Q 011718 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176 (479)
Q Consensus 97 ~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~ 176 (479)
...+...++|||+|||.++|+++|+++|++||.|.+|++. +++|||||+|.+.++|.+|+..||+..|.|+.|+
T Consensus 21 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 21 RSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp TTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred hcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445567899999999999999999999999999999997 3578999999999999999999999999999999
Q ss_pred eeccCC
Q 011718 177 CSMSET 182 (479)
Q Consensus 177 v~~a~~ 182 (479)
|.++++
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 999875
No 215
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=126.27 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=73.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
++|||+|||+++|+++|+++|++||.|..|.|+.+ .+|||||+|.+.++|.+|+..|++..|+|+.|+|.++.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999887 458999999999999999999999999999999999998764
Q ss_pred C
Q 011718 361 K 361 (479)
Q Consensus 361 ~ 361 (479)
.
T Consensus 78 ~ 78 (101)
T 2hvz_A 78 R 78 (101)
T ss_dssp S
T ss_pred c
Confidence 3
No 216
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.4e-17 Score=125.31 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=74.3
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEE-EEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.|.. |.|+.+..++ +|||||+|.+.++|.+||.. ++..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECC
Confidence 3579999999999999999999999999997 8898886666 99999999999999999997 9999999999999998
Q ss_pred CCCC
Q 011718 357 PQTN 360 (479)
Q Consensus 357 ~~~~ 360 (479)
++..
T Consensus 93 ~~~~ 96 (104)
T 1wg5_A 93 RAEV 96 (104)
T ss_dssp TTTS
T ss_pred HHHH
Confidence 7654
No 217
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.3e-17 Score=121.38 Aligned_cols=75 Identities=25% Similarity=0.522 Sum_probs=71.3
Q ss_pred eEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
+|||+|||+++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++ +++..|.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999997 4899999999999864
No 218
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.8e-17 Score=122.08 Aligned_cols=79 Identities=15% Similarity=0.296 Sum_probs=74.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.++|||+|||+++|+++|+++|++| .|..|.|+.+..+. +|||||+|.+.++|.+|+. ||+..|+|+.|.|.++.++
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 5799999999999999999999999 99999999986666 8999999999999999999 9999999999999999877
Q ss_pred CC
Q 011718 359 TN 360 (479)
Q Consensus 359 ~~ 360 (479)
..
T Consensus 88 ~~ 89 (91)
T 2dgw_A 88 PS 89 (91)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.69 E-value=1.4e-16 Score=132.88 Aligned_cols=117 Identities=15% Similarity=0.259 Sum_probs=106.4
Q ss_pred CCceeEEEEEecCHHHHHHHHHHh-cCCCCCCCeeeeeccCC----------------------CceeeccCCCCCcCHH
Q 011718 142 GESKGFAFVAFRSKEVAKRAIDEL-CSKDFKGKTIRCSMSET----------------------NNRLFIGNVPKSWTEK 198 (479)
Q Consensus 142 g~~~g~afV~F~~~e~a~~Al~~l-~~~~~~g~~l~v~~a~~----------------------~~~l~v~nl~~~~~~~ 198 (479)
...+|+++|+|.+.++|++|++.+ |+..+.| .|.+.++.. .++|||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467899999999999999999999 9999999 999988753 3689999999999999
Q ss_pred HHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeeecCCCC
Q 011718 199 EFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268 (479)
Q Consensus 199 ~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (479)
+|+.+|+.||. |..+.++.+ ++|||||+|.+.++|..|+..|+ +..+.++.|.|.|+.++.
T Consensus 89 ~l~~~F~~~G~-i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGP-LRSVWVARN------PPGFAFVEFEDPRDAADAVRELD--GRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSC-EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHS--SSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCC-EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcC--CCEECCeEEEEEEcCCCC
Confidence 99999999999 999999875 58999999999999999999999 456789999999987753
No 220
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=4e-17 Score=131.76 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=75.5
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+||..|++..|+|+.|+|.++.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3589999999999999999999999999999999988753 3 8999999999999999999999999999999999998
Q ss_pred CCC
Q 011718 357 PQT 359 (479)
Q Consensus 357 ~~~ 359 (479)
++.
T Consensus 125 ~~~ 127 (129)
T 2kxn_B 125 TKR 127 (129)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
No 221
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=123.08 Aligned_cols=82 Identities=29% Similarity=0.504 Sum_probs=74.3
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||. +++.|+|+.|.|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecC
Confidence 357899999999999999999999999999999998875 44 8999999999999999998 4779999999999999
Q ss_pred CCCCCC
Q 011718 357 PQTNKR 362 (479)
Q Consensus 357 ~~~~~~ 362 (479)
++....
T Consensus 92 ~~~~~~ 97 (103)
T 2cqg_A 92 SKQSQD 97 (103)
T ss_dssp TTCCCC
T ss_pred CCCcCC
Confidence 876543
No 222
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=125.26 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=75.3
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEE-EEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeE----EE
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVT-KVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQV----LE 351 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~-~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~----i~ 351 (479)
..++|||+|||+++++++|+++|++||.|. .|.|+.++. +. +|||||+|.+.++|.+|+..||+..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 368999999999999999999999999999 999998875 34 899999999999999999999999999999 99
Q ss_pred EEecCCCCC
Q 011718 352 VALARPQTN 360 (479)
Q Consensus 352 v~~a~~~~~ 360 (479)
|.++.+...
T Consensus 88 v~~a~~~~~ 96 (99)
T 2div_A 88 LNYATYSGP 96 (99)
T ss_dssp EEETTCCSS
T ss_pred EeecCCCCC
Confidence 999987643
No 223
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.1e-17 Score=135.86 Aligned_cols=81 Identities=15% Similarity=0.284 Sum_probs=73.7
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
...++|||+|||+++|+++|+++|++|| |+.|.|+.++.++ +|||||+|.+.++|.+|| .+|+..|+|+.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3457999999999999999999999999 6699999988876 999999999999999999 689999999999999988
Q ss_pred CCCC
Q 011718 357 PQTN 360 (479)
Q Consensus 357 ~~~~ 360 (479)
++..
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7643
No 224
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=5e-17 Score=122.17 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=77.6
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||+++|+++|+++|++| .|..|+|. +++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356899999999999999999999999 99999884 57899999999999999999999999999999999999
Q ss_pred CCCceeeccCC
Q 011718 181 ETNNRLFIGNV 191 (479)
Q Consensus 181 ~~~~~l~v~nl 191 (479)
.....+++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 98888877764
No 225
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=124.28 Aligned_cols=83 Identities=28% Similarity=0.505 Sum_probs=75.8
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+++|+++|+++|+.|+ .|+++.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999873 67888888889999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998653
No 226
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=115.95 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=69.4
Q ss_pred CCCCeEEECCCCCCCCHHHH----HHhhcccC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 101 PHGSEVFIGGLPKDASEEDL----RDLCEPIG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l----~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
+..++|||+|||+.+++++| +++|++|| .|.+| ++ |+|||.|.+.++|++|++.|++..|.||.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 33444999999999999885 58999995 99988 24 999999999999999999999999999999
Q ss_pred eeeccCCCceeecc
Q 011718 176 RCSMSETNNRLFIG 189 (479)
Q Consensus 176 ~v~~a~~~~~l~v~ 189 (479)
+|.+|+.++.++..
T Consensus 77 ~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 77 IVSFTPKNRELCET 90 (96)
T ss_dssp EEESSCCSCCCCCC
T ss_pred EEEecCCCcceeEe
Confidence 99999988876644
No 227
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=9.8e-17 Score=124.87 Aligned_cols=79 Identities=25% Similarity=0.513 Sum_probs=72.1
Q ss_pred cceEEecCCCCCC------CHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCe-EEE
Q 011718 280 VKALYVKNLPENT------TTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQ-VLE 351 (479)
Q Consensus 280 ~~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~-~i~ 351 (479)
.++|||+|||+.+ |+++|+.+|++||.|..|.|++ ..+. +|||||+|.+.++|.+|+..||+..|+|+ .|+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 5799999999999 7899999999999999999984 3334 89999999999999999999999999998 999
Q ss_pred EEecCCCC
Q 011718 352 VALARPQT 359 (479)
Q Consensus 352 v~~a~~~~ 359 (479)
|.++....
T Consensus 94 V~~a~~~~ 101 (105)
T 2nlw_A 94 VNLFTDFD 101 (105)
T ss_dssp EECSCCCC
T ss_pred EEEcchHh
Confidence 99998654
No 228
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.4e-17 Score=126.38 Aligned_cols=78 Identities=17% Similarity=0.294 Sum_probs=71.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.++|||+|||+++|+++|+++|++||.| .|.|+.++.++ +|||||+|.+.++|.+||. +|++.|+++.|+|.++.+.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCC
Confidence 5799999999999999999999999955 99999888766 9999999999999999995 7999999999999998866
Q ss_pred C
Q 011718 359 T 359 (479)
Q Consensus 359 ~ 359 (479)
.
T Consensus 93 ~ 93 (102)
T 1wez_A 93 G 93 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 229
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=8.3e-17 Score=128.43 Aligned_cols=79 Identities=25% Similarity=0.401 Sum_probs=72.8
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
...++|||+|||+++++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3468999999999999999999999999999999998865 34 899999999999999999999999999999999997
Q ss_pred C
Q 011718 356 R 356 (479)
Q Consensus 356 ~ 356 (479)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 230
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=7.8e-17 Score=125.84 Aligned_cols=78 Identities=26% Similarity=0.434 Sum_probs=72.2
Q ss_pred hhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 277 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
....++|||+|||+.+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..||+..|+|+.|.|.++.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4446899999999999999999999999999999998 3899999999999999999999999999999999998
Q ss_pred CCCC
Q 011718 357 PQTN 360 (479)
Q Consensus 357 ~~~~ 360 (479)
++..
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 8754
No 231
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.9e-17 Score=125.01 Aligned_cols=82 Identities=26% Similarity=0.464 Sum_probs=73.7
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|++||..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999977 55665 568999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++.++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 997653
No 232
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=9.7e-17 Score=124.75 Aligned_cols=78 Identities=14% Similarity=0.269 Sum_probs=72.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..+|||+|||+.+|+++|+++|++| .|..|.|+.++.++ +|||||+|.+.++|.+|| .+|++.|+|+.|.|..+.++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4789999999999999999999999 89999999988877 999999999999999999 58999999999999998765
Q ss_pred C
Q 011718 359 T 359 (479)
Q Consensus 359 ~ 359 (479)
.
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 233
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=2.8e-17 Score=127.99 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=72.7
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
.++..++|||+|||+++|+++|+++|++|| .|..|.|.. ..++|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 456678999999999999999999999999 899998854 347899999999999999999999999999999999
Q ss_pred eccCC
Q 011718 178 SMSET 182 (479)
Q Consensus 178 ~~a~~ 182 (479)
.++..
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99864
No 234
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-16 Score=123.93 Aligned_cols=82 Identities=21% Similarity=0.366 Sum_probs=74.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCC-EEEEEcc-CCCCC-C-CceEEEEeCChHHHHHHHHhcC--CceecCeEEEEE
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGE-VTKVVTP-PGKSG-K-RDFGFIHYAERSSALKAIKDTE--KYEIDGQVLEVA 353 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~v~~~-~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~--~~~~~g~~i~v~ 353 (479)
.++|||+|||+.+|+++|+++|++||. |..|.|+ .+..+ . +|||||+|.+.++|.+|+..|+ +..|+|+.|+|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 579999999999999999999999998 9999998 55553 3 8999999999999999999996 589999999999
Q ss_pred ecCCCCCC
Q 011718 354 LARPQTNK 361 (479)
Q Consensus 354 ~a~~~~~~ 361 (479)
++.++...
T Consensus 88 ~a~~~~~~ 95 (109)
T 2dis_A 88 WAEPEIDV 95 (109)
T ss_dssp ESCSSCST
T ss_pred EcCCCCCc
Confidence 99987653
No 235
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2e-16 Score=121.00 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=71.1
Q ss_pred hhccceEEecCCCC-CCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 277 ASQVKALYVKNLPE-NTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 277 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
...+++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 33468999999998 99999999999999999999994 489999999999999999999999999999999999
Q ss_pred CCCC
Q 011718 356 RPQT 359 (479)
Q Consensus 356 ~~~~ 359 (479)
+++.
T Consensus 93 ~~~~ 96 (97)
T 2xnq_A 93 SSNA 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 236
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-17 Score=126.00 Aligned_cols=78 Identities=27% Similarity=0.412 Sum_probs=72.3
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCC-----Ce
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG-----KT 174 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g-----~~ 174 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+.+ |||||+|.+.++|++||+.||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 346789999999999999999999999999999999865 899999999999999999999999999 99
Q ss_pred eeeeccCCCc
Q 011718 175 IRCSMSETNN 184 (479)
Q Consensus 175 l~v~~a~~~~ 184 (479)
|+|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999988653
No 237
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.5e-17 Score=128.86 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=74.3
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCE-EEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+|+++|+++|++||.| ..|.|+.+..+. +|||||+|.+.++|.+||.. |++.|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEEC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECC
Confidence 35799999999999999999999999999 889999888666 99999999999999999986 9999999999999998
Q ss_pred CCC
Q 011718 357 PQT 359 (479)
Q Consensus 357 ~~~ 359 (479)
++.
T Consensus 93 ~~~ 95 (114)
T 2cpy_A 93 LED 95 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 238
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=6.6e-17 Score=124.57 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=72.6
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEE--------EEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCe
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTK--------VVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQ 348 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~ 348 (479)
..++|||+|||+++|+++|+++|++||.|.. |.|+.++. +. +|||||+|.+.++|.+|+..||+..|+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3689999999999999999999999999999 99998865 44 89999999999999999999999999999
Q ss_pred EEEEEecC
Q 011718 349 VLEVALAR 356 (479)
Q Consensus 349 ~i~v~~a~ 356 (479)
.|+|.+|+
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999984
No 239
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=1.6e-16 Score=119.30 Aligned_cols=76 Identities=29% Similarity=0.549 Sum_probs=70.0
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
..++|||+|||+++|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+. ++++.|+|+.|.|.+|
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 358999999999999999999999999999999998875 44 8999999999999999997 5888999999999986
No 240
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=2e-16 Score=124.38 Aligned_cols=76 Identities=17% Similarity=0.386 Sum_probs=70.4
Q ss_pred ccceEEecCCCCC-CCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 279 QVKALYVKNLPEN-TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 279 ~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
..++|||+|||+. +|+++|+++|++||.|..|.| .++||||+|.+.++|.+|+..|++..|+|+.|+|.++.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3579999999999 999999999999999999999 248999999999999999999999999999999999986
Q ss_pred CCC
Q 011718 358 QTN 360 (479)
Q Consensus 358 ~~~ 360 (479)
+..
T Consensus 100 ~~~ 102 (110)
T 1wf1_A 100 PKP 102 (110)
T ss_dssp CCS
T ss_pred CCC
Confidence 544
No 241
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=9.7e-18 Score=129.84 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=74.9
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+++|+++|+++|++||.|.. .++.+..+++++|||||+|.+.++|.+||+ ||+..|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999888 666776778999999999999999999998 999999999999999
Q ss_pred cCCC
Q 011718 180 SETN 183 (479)
Q Consensus 180 a~~~ 183 (479)
+.++
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8764
No 242
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=4e-17 Score=125.90 Aligned_cols=81 Identities=21% Similarity=0.413 Sum_probs=72.3
Q ss_pred hhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCC--CCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEE
Q 011718 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK--SGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353 (479)
Q Consensus 277 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~--~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 353 (479)
....++|||+|||+++++++|+++|++|| |..|.|+.+. .++ +|||||+|.+.++|.+|+ .|++..|+|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34468999999999999999999999999 9999999987 345 899999999999999999 899999999999999
Q ss_pred ecCCCC
Q 011718 354 LARPQT 359 (479)
Q Consensus 354 ~a~~~~ 359 (479)
++.++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998763
No 243
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.9e-17 Score=129.79 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=72.2
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCce----eEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeee
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEV----FEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i----~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~ 176 (479)
...++|||+|||+++|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|++||+. ++..|.+|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999975 689999984 799999999999999999999985 99999999999
Q ss_pred eeccC
Q 011718 177 CSMSE 181 (479)
Q Consensus 177 v~~a~ 181 (479)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98764
No 244
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=9.9e-17 Score=133.77 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=73.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCC--CEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHG--EVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
.++|||+|||+++|+++|+++|++|| .|..|.|+.++. +. +|||||+|.+.++|.+||..||++.|+|+.|.|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 57999999999999999999999999 999999998865 44 899999999999999999999999999999999999
Q ss_pred CCC
Q 011718 356 RPQ 358 (479)
Q Consensus 356 ~~~ 358 (479)
.++
T Consensus 135 ~~~ 137 (156)
T 3n9u_C 135 TRQ 137 (156)
T ss_dssp CHH
T ss_pred CCC
Confidence 764
No 245
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.8e-17 Score=126.86 Aligned_cols=81 Identities=23% Similarity=0.570 Sum_probs=74.7
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||..+|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556789999999999999999999999999999999865 7899999999999999999999999999999999
Q ss_pred ccCCCce
Q 011718 179 MSETNNR 185 (479)
Q Consensus 179 ~a~~~~~ 185 (479)
++.++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9987543
No 246
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.7e-17 Score=123.91 Aligned_cols=78 Identities=29% Similarity=0.490 Sum_probs=73.1
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|.+++ |||||+|.+.++|.+|+..||++.|+|+.|+|.++.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k----g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK----GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT----TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC----CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 35799999999999999999999999999999998764 89999999999999999999999999999999999887
Q ss_pred CC
Q 011718 359 TN 360 (479)
Q Consensus 359 ~~ 360 (479)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 247
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=2e-16 Score=127.30 Aligned_cols=83 Identities=27% Similarity=0.438 Sum_probs=77.2
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
...++|||+|||+.+++++|+++|++||.|..|.|..+..+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.+|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 346899999999999999999999999999999999988655 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 011718 357 PQTN 360 (479)
Q Consensus 357 ~~~~ 360 (479)
+...
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 7654
No 248
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.7e-17 Score=126.14 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=71.2
Q ss_pred ccceEEecCCCCC-CCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcC--CceecCeEEEEEec
Q 011718 279 QVKALYVKNLPEN-TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE--KYEIDGQVLEVALA 355 (479)
Q Consensus 279 ~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~--~~~~~g~~i~v~~a 355 (479)
.+++|||+|||++ +|+++|+++|++||.|.+|.|++. ||||||+|.+.++|.+|+..|+ +..|.|+.|+|.++
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 3689999999998 999999999999999999999865 4999999999999999999886 45699999999999
Q ss_pred CCCCCC
Q 011718 356 RPQTNK 361 (479)
Q Consensus 356 ~~~~~~ 361 (479)
+.+...
T Consensus 100 ~~~~~~ 105 (112)
T 1x4f_A 100 EKYKKL 105 (112)
T ss_dssp CSCSSS
T ss_pred cccccc
Confidence 877654
No 249
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=2.5e-17 Score=133.77 Aligned_cols=81 Identities=26% Similarity=0.365 Sum_probs=73.8
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+++|+++|+++|++|| |+.|+|+.++. ++++|||||+|.+.++|++|| .+|+..|.++.|+|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34567999999999999999999999999 77999999987 999999999999999999999 7899999999999988
Q ss_pred cCCC
Q 011718 180 SETN 183 (479)
Q Consensus 180 a~~~ 183 (479)
+...
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 250
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-17 Score=132.07 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=73.0
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
..+.++|||+|||+.+|+++|+++|++||.|..|.+..+..+++++|||||+|.+.++|.+||..|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999984332222222688999999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 97653
No 251
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=132.13 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=75.2
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEE--EEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCc----eecCeE
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTK--VVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKY----EIDGQV 349 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~----~~~g~~ 349 (479)
..+++|||+|||+++|+++|+++|++||.|.. |+|++++. +. ||||||+|.+. +|.+|+..||+. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34689999999999999999999999999976 99999984 44 99999999999 999999999999 999999
Q ss_pred EEEEecCCCCC
Q 011718 350 LEVALARPQTN 360 (479)
Q Consensus 350 i~v~~a~~~~~ 360 (479)
|+|.++.++..
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999988654
No 252
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=1e-16 Score=136.86 Aligned_cols=86 Identities=20% Similarity=0.318 Sum_probs=80.2
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.|++..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678899999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred ccCCCce
Q 011718 179 MSETNNR 185 (479)
Q Consensus 179 ~a~~~~~ 185 (479)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9876443
No 253
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=127.22 Aligned_cols=80 Identities=15% Similarity=0.338 Sum_probs=71.4
Q ss_pred cceEEecCCCCCCCHHHHH----HHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 280 VKALYVKNLPENTTTKQLK----ELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
+++|||+|||+.+++++|+ ++|++||.|.+|.+.... ..+|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~-~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSD-DNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCC-SSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCC-CcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 5799999999999998876 699999999999886521 22899999999999999999999999999999999999
Q ss_pred CCCCC
Q 011718 356 RPQTN 360 (479)
Q Consensus 356 ~~~~~ 360 (479)
..+..
T Consensus 108 ~~~~~ 112 (127)
T 2a3j_A 108 ETPQS 112 (127)
T ss_dssp CCCCH
T ss_pred cCcch
Confidence 87653
No 254
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=1.8e-16 Score=121.25 Aligned_cols=79 Identities=27% Similarity=0.462 Sum_probs=71.3
Q ss_pred cCCCCCCCeEEECCCCC-CCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 97 LALPPHGSEVFIGGLPK-DASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 97 ~~~~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
....+..++|||+|||+ ++|+++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..|++..|.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456789999999998 99999999999999999999983 7899999999999999999999999999999
Q ss_pred eeeccCCC
Q 011718 176 RCSMSETN 183 (479)
Q Consensus 176 ~v~~a~~~ 183 (479)
+|.+++.+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998764
No 255
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=119.53 Aligned_cols=77 Identities=21% Similarity=0.378 Sum_probs=70.9
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh-cCCCCCCCeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL-CSKDFKGKTIRC 177 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l-~~~~~~g~~l~v 177 (479)
.....++|||+|||..+|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+..| ++..|.|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999863 789999999999999999988 999999999999
Q ss_pred eccC
Q 011718 178 SMSE 181 (479)
Q Consensus 178 ~~a~ 181 (479)
.+++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 256
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=5.7e-17 Score=118.00 Aligned_cols=73 Identities=26% Similarity=0.453 Sum_probs=68.4
Q ss_pred eEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 282 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
+|||+|||+++|+++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|++ |+++.|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999998874 44 8999999999999999998 9999999999999876
No 257
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=122.12 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=72.0
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+.+|+++|+++|++||.|. +.++. +.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999996 66665 36789999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87653
No 258
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=2.5e-16 Score=126.88 Aligned_cols=84 Identities=21% Similarity=0.409 Sum_probs=75.5
Q ss_pred hhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEE
Q 011718 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353 (479)
Q Consensus 276 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 353 (479)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+ .||++.|+|+.|+|.
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 344578999999999999999999999999999999998754 34 899999999999999999 799999999999999
Q ss_pred ecCCCCC
Q 011718 354 LARPQTN 360 (479)
Q Consensus 354 ~a~~~~~ 360 (479)
++.+...
T Consensus 111 ~a~~~~~ 117 (124)
T 2jwn_A 111 PKRTNMP 117 (124)
T ss_dssp ESSCCCS
T ss_pred ECCCCCC
Confidence 9986543
No 259
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6e-17 Score=126.16 Aligned_cols=83 Identities=29% Similarity=0.544 Sum_probs=76.4
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||+..|+|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4589999999999999999999999999999999988643 3 8999999999999999999999999999999999999
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
++...
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 87653
No 260
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=7.4e-17 Score=128.35 Aligned_cols=79 Identities=25% Similarity=0.406 Sum_probs=72.4
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCcee--EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVF--EVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~--~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
+...++|||+|||+++|+++|+++|++| .|. .|+|+.++. |+++|||||+|.+.++|++||+. ++..|.||.|+|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 4567899999999999999999999999 677 999999987 99999999999999999999974 789999999999
Q ss_pred eccC
Q 011718 178 SMSE 181 (479)
Q Consensus 178 ~~a~ 181 (479)
.++.
T Consensus 116 ~~a~ 119 (126)
T 2hgm_A 116 FKSS 119 (126)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8875
No 261
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=125.14 Aligned_cols=76 Identities=24% Similarity=0.331 Sum_probs=71.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
.++|||+|||+.+|+++|+++|++||.|..|.|+..+ +||||+|.+.++|.+|+..||+..|+|+.|.|.|+....
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~----g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG----ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS----SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----CEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 5799999999999999999999999999999998644 899999999999999999999999999999999997654
No 262
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=1.9e-16 Score=123.69 Aligned_cols=79 Identities=29% Similarity=0.530 Sum_probs=72.2
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
......++|||+|||+.+|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345577899999999999999999999999999999997 689999999999999999999999999999999
Q ss_pred eccCCCc
Q 011718 178 SMSETNN 184 (479)
Q Consensus 178 ~~a~~~~ 184 (479)
.++....
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9997653
No 263
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=118.55 Aligned_cols=74 Identities=27% Similarity=0.487 Sum_probs=69.6
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhc-CCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT-EKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~-~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||..+++++|+++|++||.|..|.+.+++ |||||+|.+.++|.+|+..| ++..|+|+.|+|.+++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k----g~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ----QCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG----TEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC----CEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 35899999999999999999999999999999998754 89999999999999999998 9999999999999975
No 264
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=6.3e-17 Score=124.27 Aligned_cols=84 Identities=19% Similarity=0.384 Sum_probs=75.7
Q ss_pred CCCCCCeEEECCCCCCCCHHHHH----HhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCe
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLR----DLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKT 174 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~ 174 (479)
..+++++|||+|||.++|+++|+ ++|++||.|..|++.+ ++.++|||||+|.+.++|.+|+..||+..|.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34578899999999999999999 9999999999999874 3778899999999999999999999999999999
Q ss_pred eeeeccCCCce
Q 011718 175 IRCSMSETNNR 185 (479)
Q Consensus 175 l~v~~a~~~~~ 185 (479)
|+|.++.++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987543
No 265
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.6e-16 Score=121.51 Aligned_cols=77 Identities=29% Similarity=0.503 Sum_probs=69.8
Q ss_pred CCCCCCeEEECCCCC-CCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 99 LPPHGSEVFIGGLPK-DASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
..++.++|||+|||+ .+|+++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345788999999998 99999999999999999999984 689999999999999999999999999999999
Q ss_pred eccCCC
Q 011718 178 SMSETN 183 (479)
Q Consensus 178 ~~a~~~ 183 (479)
.++..+
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 998654
No 266
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=1.7e-17 Score=132.00 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=74.0
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCC---EEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGE---VTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
.++|||+|||+++|+++|+++|++||. |..|+|+.++.++ +|||||+|.+.++|.+||. +|++.|+|+.|+|.++
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKS 95 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEEC
Confidence 578999999999999999999999998 8999999888777 9999999999999999999 9999999999999999
Q ss_pred CCCC
Q 011718 356 RPQT 359 (479)
Q Consensus 356 ~~~~ 359 (479)
..+.
T Consensus 96 ~~~~ 99 (118)
T 2db1_A 96 HRTE 99 (118)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 267
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=6.8e-17 Score=119.40 Aligned_cols=72 Identities=24% Similarity=0.529 Sum_probs=65.2
Q ss_pred ceEEecCCCCCC------CHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCe-EEEE
Q 011718 281 KALYVKNLPENT------TTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQ-VLEV 352 (479)
Q Consensus 281 ~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~-~i~v 352 (479)
++|||+|||+.+ |+++|+++|++||.|..|.|++.....+|||||+|.+.++|.+|+..||+..|+|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 77999999999999999999843333389999999999999999999999999999 8876
No 268
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=121.18 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=70.9
Q ss_pred cceEEe--cCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCcee-----cCeEEEE
Q 011718 280 VKALYV--KNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI-----DGQVLEV 352 (479)
Q Consensus 280 ~~~l~v--~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~-----~g~~i~v 352 (479)
+++||| +||++++|+++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|||+.| .|++|.|
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 578999 779999999999999999999999999864 48999999999999999999999988 7899999
Q ss_pred EecCCCCCC
Q 011718 353 ALARPQTNK 361 (479)
Q Consensus 353 ~~a~~~~~~ 361 (479)
.|+......
T Consensus 101 ~~a~~~p~~ 109 (114)
T 2cq2_A 101 NFVEKVQWS 109 (114)
T ss_dssp EEESCCCCS
T ss_pred EecccCccc
Confidence 999866543
No 269
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.3e-18 Score=134.88 Aligned_cols=84 Identities=30% Similarity=0.499 Sum_probs=78.9
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeE--------EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCC
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFE--------VGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG 172 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g 172 (479)
.+.++|||+|||+.+|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|+..||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 9999998889999999999999999999999999999999
Q ss_pred CeeeeeccCCCc
Q 011718 173 KTIRCSMSETNN 184 (479)
Q Consensus 173 ~~l~v~~a~~~~ 184 (479)
+.|+|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999987643
No 270
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=119.98 Aligned_cols=78 Identities=27% Similarity=0.456 Sum_probs=71.9
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|++++ +||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 455778999999999999999999999999999999973 399999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++.++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 997654
No 271
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1e-16 Score=122.70 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=71.1
Q ss_pred hccceEEecCCCC-CCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 278 SQVKALYVKNLPE-NTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 278 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
...++|||+|||+ .+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 3468999999999 99999999999999999999995 4899999999999999999999999999999999998
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
++...
T Consensus 82 ~~~~~ 86 (96)
T 2kvi_A 82 SNARP 86 (96)
T ss_dssp CCCC-
T ss_pred cCCCC
Confidence 76543
No 272
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.2e-16 Score=123.67 Aligned_cols=75 Identities=24% Similarity=0.410 Sum_probs=70.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.++|||+|||.++++++|+++|++||.|..|.|.+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.+++++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE----KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 579999999999999999999999999999999843 499999999999999999999999999999999999864
No 273
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=7.9e-16 Score=126.90 Aligned_cols=79 Identities=30% Similarity=0.495 Sum_probs=72.4
Q ss_pred hhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 277 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
....++|||+|||..+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||++.|+|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 33468999999999999999999999999999999998865 34 89999999999999999999999999999999998
Q ss_pred c
Q 011718 355 A 355 (479)
Q Consensus 355 a 355 (479)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 274
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=5.1e-17 Score=124.29 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=70.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
.++|||+|||+.+|+++|+++|++||.|..+.++.++. +. +|||||+|.+.++|.+|+..||++.|+|+.|+|.++.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 57999999999999999999999999998777766554 34 89999999999999999999999999999999999864
No 275
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=119.17 Aligned_cols=77 Identities=32% Similarity=0.524 Sum_probs=71.3
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+.+|+++|+++|++||.|..|+|++ +||||+|.+.++|++|+..||+..|.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 355778999999999999999999999999999999973 399999999999999999999999999999999
Q ss_pred ccCCC
Q 011718 179 MSETN 183 (479)
Q Consensus 179 ~a~~~ 183 (479)
++.+.
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98764
No 276
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.1e-17 Score=124.58 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=71.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
.++|||+|||+.+++++|+++|++||.|..+.++.++. +. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++..
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 57899999999999999999999999998766665544 34 89999999999999999999999999999999999876
Q ss_pred C
Q 011718 358 Q 358 (479)
Q Consensus 358 ~ 358 (479)
+
T Consensus 95 ~ 95 (98)
T 2cqp_A 95 P 95 (98)
T ss_dssp S
T ss_pred C
Confidence 5
No 277
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=124.54 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=70.0
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|++ +++||||+|.+.++|++|+..||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357999999999999999999999999999998864 57899999999999999999999999999999999987
Q ss_pred C
Q 011718 182 T 182 (479)
Q Consensus 182 ~ 182 (479)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 5
No 278
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=2.7e-16 Score=124.46 Aligned_cols=76 Identities=14% Similarity=0.301 Sum_probs=67.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeE-----EEEEe
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQV-----LEVAL 354 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~-----i~v~~ 354 (479)
.++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..||+..|+|+. |+|..
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 579999999999999999999999999999999876 79999999999999999999999999988 77777
Q ss_pred cCCCCC
Q 011718 355 ARPQTN 360 (479)
Q Consensus 355 a~~~~~ 360 (479)
+.++..
T Consensus 91 ~~~~~~ 96 (115)
T 3beg_B 91 DGPRSP 96 (115)
T ss_dssp CC----
T ss_pred CCCCCC
Confidence 776543
No 279
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=5.9e-17 Score=131.16 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=73.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCC---EEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGE---VTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
.++|||+|||+++|+++|+++|++||. |..|+|+.++.++ +|||||+|.+.++|.+||. ||+..|+|+.|+|.++
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 578999999999999999999999999 8899999888777 9999999999999999999 9999999999999998
Q ss_pred CCCC
Q 011718 356 RPQT 359 (479)
Q Consensus 356 ~~~~ 359 (479)
.++.
T Consensus 123 ~~~e 126 (136)
T 2hgl_A 123 HRTE 126 (136)
T ss_dssp CHHH
T ss_pred ChHH
Confidence 7543
No 280
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.2e-17 Score=117.57 Aligned_cols=74 Identities=23% Similarity=0.471 Sum_probs=69.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
++|||+|||+++++++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|+..++ +.|+|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999999999998875 34 8999999999999999999999 9999999999987
No 281
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=2.7e-16 Score=120.75 Aligned_cols=80 Identities=24% Similarity=0.477 Sum_probs=73.1
Q ss_pred ccceEEecCCCCCCCHHHHH----HHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEE
Q 011718 279 QVKALYVKNLPENTTTKQLK----ELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 353 (479)
.+++|||+|||+.+++++|+ ++|++||.|..|.+.. .+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 46899999999999999999 9999999999999974 233 7999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 011718 354 LARPQTN 360 (479)
Q Consensus 354 ~a~~~~~ 360 (479)
++.++..
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9988653
No 282
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=5.8e-16 Score=127.63 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=71.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecC--eEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g--~~i~v~~a~~ 357 (479)
..+|||+||++.+|+++|+++|++||.|.+|.|.... .++||||+|.+.++|.+|+..|||..|.| +.|+|.|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 4679999999999999999999999999999996543 25899999999999999999999999965 9999999998
Q ss_pred CCC
Q 011718 358 QTN 360 (479)
Q Consensus 358 ~~~ 360 (479)
+..
T Consensus 124 ~~l 126 (164)
T 1sjr_A 124 TSL 126 (164)
T ss_dssp SSC
T ss_pred Ccc
Confidence 754
No 283
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-17 Score=122.32 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=70.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
.++|||+|||+.+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..|+|+.|+|.+++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 58999999999999999999999999999999998865 34 8999999999999999999999999999999877654
No 284
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=124.57 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=74.2
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCcee--------cCeE
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEI--------DGQV 349 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~--------~g~~ 349 (479)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+..| .+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~ 103 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 103 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCc
Confidence 35799999999999999999999999999999999988656 89999999999999999999999999 6788
Q ss_pred EEEEecCCC
Q 011718 350 LEVALARPQ 358 (479)
Q Consensus 350 i~v~~a~~~ 358 (479)
|.|.|+.++
T Consensus 104 l~v~~a~p~ 112 (114)
T 1x5o_A 104 LLCKFSGPS 112 (114)
T ss_dssp BEEEECCCS
T ss_pred eeEEccCCC
Confidence 999999865
No 285
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=120.76 Aligned_cols=77 Identities=25% Similarity=0.484 Sum_probs=68.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCC-EEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCC-ceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGE-VTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK-YEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~-~~~~g~~i~v~~a~~ 357 (479)
.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..|+|+.|+|.++.+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 579999999999999999999999999 5555552 258999999999999999999999 999999999999988
Q ss_pred CCCC
Q 011718 358 QTNK 361 (479)
Q Consensus 358 ~~~~ 361 (479)
+..+
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7543
No 286
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=3.8e-16 Score=123.98 Aligned_cols=80 Identities=18% Similarity=0.372 Sum_probs=73.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
+++|||+|||+.+|+++|+++|++||.|..|.|+.+... +|||||+|.+.++|.+|+..||+..|+|+.|.|.++.++.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET-RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTT-TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC-CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 579999999999999999999999999999999875432 7999999999999999999999999999999999998654
Q ss_pred C
Q 011718 360 N 360 (479)
Q Consensus 360 ~ 360 (479)
.
T Consensus 87 ~ 87 (115)
T 3lqv_A 87 A 87 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 287
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=2.9e-16 Score=121.84 Aligned_cols=77 Identities=23% Similarity=0.429 Sum_probs=70.9
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+++|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3467899999999999999999999999999999986 45999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.+..
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 97643
No 288
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=116.39 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=70.1
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|| ++|+++|+++|++||.|..|.|... +|||||+|.+.++|.+||..||++.|+|+.|+|.++.++
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3579999996 8999999999999999999999533 599999999999999999999999999999999999887
Q ss_pred CCC
Q 011718 359 TNK 361 (479)
Q Consensus 359 ~~~ 361 (479)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 289
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=118.26 Aligned_cols=77 Identities=18% Similarity=0.334 Sum_probs=67.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
.++|||+|||+++|+++|+++|++||.|..| +.++.+.+ ||||+|.+.++|.+|+. |+++.|+|+.|.|.++.++.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 4799999999999999999999999999998 33332223 99999999999999999 99999999999999887665
Q ss_pred C
Q 011718 360 N 360 (479)
Q Consensus 360 ~ 360 (479)
.
T Consensus 84 ~ 84 (94)
T 2e5g_A 84 F 84 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 290
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=5.9e-17 Score=122.52 Aligned_cols=79 Identities=32% Similarity=0.522 Sum_probs=70.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
++|||+|||.++++++|+++|++||.|..|.|..+.. +. +|||||+|.+.+ |.+|+..||+..|+|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5799999999999999999999999999999998876 34 899999999999 99999999999999999999999876
Q ss_pred CC
Q 011718 359 TN 360 (479)
Q Consensus 359 ~~ 360 (479)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 291
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=6.8e-17 Score=125.28 Aligned_cols=79 Identities=27% Similarity=0.548 Sum_probs=74.3
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
..++|||+|||+++|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45799999999999999999999999999999999998 89999999999999999999997 8999999999998886
Q ss_pred CC
Q 011718 182 TN 183 (479)
Q Consensus 182 ~~ 183 (479)
.+
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 292
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=119.60 Aligned_cols=77 Identities=25% Similarity=0.361 Sum_probs=70.7
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhccc--CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPI--GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~--G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
....++|||+|||+.+|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|+..||+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 899998874 569999999999999999999999999999999
Q ss_pred eccCCCc
Q 011718 178 SMSETNN 184 (479)
Q Consensus 178 ~~a~~~~ 184 (479)
.++.++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998654
No 293
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=120.75 Aligned_cols=79 Identities=29% Similarity=0.463 Sum_probs=70.2
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|||+.+|+++|+++|++||.|. +.++.+ ..+|||||+|.+.++|.+|+..||+..|+|+.|+|.++.++
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 357999999999999999999999999986 555543 23699999999999999999999999999999999999886
Q ss_pred CC
Q 011718 359 TN 360 (479)
Q Consensus 359 ~~ 360 (479)
..
T Consensus 95 ~~ 96 (97)
T 2e5j_A 95 RD 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 294
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-16 Score=122.36 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=71.3
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||+.+|+++|+++|++||.|..| ..++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356799999999999999999999999988766 245889999999999999999999999999999999999998
Q ss_pred CCCc
Q 011718 181 ETNN 184 (479)
Q Consensus 181 ~~~~ 184 (479)
.++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7653
No 295
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.9e-16 Score=120.45 Aligned_cols=80 Identities=31% Similarity=0.515 Sum_probs=69.5
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
...++|||+|||+.+|+++|+++|+.|+ .|.++.+.. +. +|||||+|.+.++|.+||..||++.|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3468999999999999999999999885 445555543 34 899999999999999999999999999999999999
Q ss_pred CCCCC
Q 011718 356 RPQTN 360 (479)
Q Consensus 356 ~~~~~ 360 (479)
.++..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 98765
No 296
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=120.14 Aligned_cols=78 Identities=27% Similarity=0.461 Sum_probs=69.8
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
..++|||+|||+.+|+++|+++|++||.|..+ ...+. +|||||+|.+.++|.+|+..|++..|+|+.|.|.++.+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 36899999999999999999999999988766 22233 79999999999999999999999999999999999988
Q ss_pred CCC
Q 011718 358 QTN 360 (479)
Q Consensus 358 ~~~ 360 (479)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 297
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.4e-16 Score=123.28 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=71.4
Q ss_pred CeEEECCC----CCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecC----HHH----HHHHHH--HhcCCC
Q 011718 104 SEVFIGGL----PKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRS----KEV----AKRAID--ELCSKD 169 (479)
Q Consensus 104 ~~l~V~nL----p~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~----~e~----a~~Al~--~l~~~~ 169 (479)
+.|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||+++|||||+|.+ ++. |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 888888 689999
Q ss_pred CCCCeeeeeccCC
Q 011718 170 FKGKTIRCSMSET 182 (479)
Q Consensus 170 ~~g~~l~v~~a~~ 182 (479)
|.|+.|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987654
No 298
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-17 Score=132.35 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=75.7
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEE--------EEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCe
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTK--------VVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQ 348 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~ 348 (479)
..++|||+|||+.+++++|+++|++||.|.. |.|+.++. +. +|||||+|.+.++|.+|+..||+..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 3579999999999999999999999999998 88888865 34 89999999999999999999999999999
Q ss_pred EEEEEecCCCCCC
Q 011718 349 VLEVALARPQTNK 361 (479)
Q Consensus 349 ~i~v~~a~~~~~~ 361 (479)
.|+|.++.++...
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999887543
No 299
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=124.34 Aligned_cols=81 Identities=26% Similarity=0.484 Sum_probs=71.5
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCE----EEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEE
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEV----TKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v----~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 353 (479)
.+++|||+|||+.+|+++|+++|++||.| ..+.+. .+. +|||||+|.+.++|.+|+..||++.|+|+.|+|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 35899999999999999999999999988 555555 233 7999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 011718 354 LARPQTNKR 362 (479)
Q Consensus 354 ~a~~~~~~~ 362 (479)
++.++..+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999876543
No 300
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4e-16 Score=119.46 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=71.4
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEE-EeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG-LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~-i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
...++|||+|||+.+|+++|+++|++||.|..|+ |+.++.+ +.|||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3578999999999999999999999999999994 7777553 3399999999999999999999999999999999
Q ss_pred cCCC
Q 011718 180 SETN 183 (479)
Q Consensus 180 a~~~ 183 (479)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8765
No 301
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.1e-16 Score=118.07 Aligned_cols=78 Identities=17% Similarity=0.308 Sum_probs=71.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEE-EccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v-~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.++|||+|||+++|+++|+++|++||.|..| .|+.++.+ +.|||+|.+.++|.+|+..||++.|+|+.|+|.++.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 5789999999999999999999999999999 47777654 45999999999999999999999999999999999987
Q ss_pred C
Q 011718 359 T 359 (479)
Q Consensus 359 ~ 359 (479)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 302
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=116.97 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=69.0
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.+.++|.+||. |++..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456799999999999999999999999999987 55555555 99999999999999999 9999999999999988
Q ss_pred CCC
Q 011718 181 ETN 183 (479)
Q Consensus 181 ~~~ 183 (479)
..+
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 654
No 303
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=9.2e-17 Score=125.49 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=74.4
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCC---EEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGE---VTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
...+|||+|||+++|+++|+++|+.||. |..|.|+.++.++ +|||||+|.+.++|.+||. +|+..|+|+.|.|.+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYE 88 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEE
Confidence 3578999999999999999999999998 8999999988866 9999999999999999999 999999999999999
Q ss_pred cCCCC
Q 011718 355 ARPQT 359 (479)
Q Consensus 355 a~~~~ 359 (479)
+.++.
T Consensus 89 a~~~~ 93 (107)
T 2lmi_A 89 INNED 93 (107)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 98654
No 304
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.2e-15 Score=121.11 Aligned_cols=79 Identities=24% Similarity=0.339 Sum_probs=71.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCce-EEEEeCChHHHHHHHHhcCCceecC--eEEEEEecC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDF-GFIHYAERSSALKAIKDTEKYEIDG--QVLEVALAR 356 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~-~fV~f~~~~~a~~a~~~~~~~~~~g--~~i~v~~a~ 356 (479)
...|||+||++.+|+++|+++|++||.|.+|+|.... +|| |||+|.+.++|.+|+..|||..|.| +.|+|.|++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 3578899999999999999999999999999987643 477 9999999999999999999999998 999999999
Q ss_pred CCCCC
Q 011718 357 PQTNK 361 (479)
Q Consensus 357 ~~~~~ 361 (479)
++...
T Consensus 105 ~~~l~ 109 (130)
T 3zzy_A 105 LTSLN 109 (130)
T ss_dssp CSSCC
T ss_pred CCcee
Confidence 87543
No 305
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=2.4e-16 Score=114.67 Aligned_cols=73 Identities=25% Similarity=0.445 Sum_probs=67.7
Q ss_pred eEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 282 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
+|||+|||+++|+++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|+.. +++.|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999998875 33 89999999999999999995 889999999999875
No 306
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=111.12 Aligned_cols=75 Identities=27% Similarity=0.394 Sum_probs=66.6
Q ss_pred cce-EEecCCCCCCCHHH----HHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEE
Q 011718 280 VKA-LYVKNLPENTTTKQ----LKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353 (479)
Q Consensus 280 ~~~-l~v~nl~~~~~~~~----l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 353 (479)
+.+ |||+|||+.+++++ |+++|++|| .|.+|. + |+|||+|.+.++|.+|++.|+|..|.||+|+|.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------g--G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------G--CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------T--TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------c--CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 445 99999999999987 558999994 999992 1 899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 011718 354 LARPQTNKR 362 (479)
Q Consensus 354 ~a~~~~~~~ 362 (479)
+|+.+..--
T Consensus 80 ~A~~~sd~~ 88 (96)
T 2diu_A 80 FTPKNRELC 88 (96)
T ss_dssp SSCCSCCCC
T ss_pred ecCCCccee
Confidence 999876543
No 307
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=126.16 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=71.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCE----EEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEV----TKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v----~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
..+|||+|||+++|+++|+++|++||.| ..|.|+.+..++ +|||||+|.+.++|.+||.. |++.|+++.|.|..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFR 101 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEE
Confidence 5789999999999999999999999975 588888887777 99999999999999999996 99999999999999
Q ss_pred cCCCC
Q 011718 355 ARPQT 359 (479)
Q Consensus 355 a~~~~ 359 (479)
+.++.
T Consensus 102 a~~~e 106 (123)
T 2dha_A 102 STAAE 106 (123)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87654
No 308
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=6.4e-16 Score=121.49 Aligned_cols=74 Identities=26% Similarity=0.438 Sum_probs=69.5
Q ss_pred CCCCeEEECCCCCC-CCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 101 PHGSEVFIGGLPKD-ASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 101 ~~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
...++|||+|||+. +|+++|+++|++||.|..|+| ++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999998 478999999999999999999999999999999999
Q ss_pred cCC
Q 011718 180 SET 182 (479)
Q Consensus 180 a~~ 182 (479)
+..
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 874
No 309
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=7.2e-16 Score=127.42 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=73.6
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEE--------EEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEV--------GLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD 169 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v--------~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~ 169 (479)
....++++|||+|||+.+|+++|+++|++||.|..| ++. .+++++|||||+|.+.++|.+||..||+..
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 345678899999999999999999999999998764 333 358999999999999999999999999999
Q ss_pred CCCCeeeeeccCCC
Q 011718 170 FKGKTIRCSMSETN 183 (479)
Q Consensus 170 ~~g~~l~v~~a~~~ 183 (479)
|.|+.|+|.++...
T Consensus 117 ~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 117 LFGKPMVVQFARSA 130 (143)
T ss_dssp ETTEECEEEECCCS
T ss_pred eCCcEEEEEECCCC
Confidence 99999999998753
No 310
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.3e-15 Score=119.08 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=69.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCce-EEEEeCChHHHHHHHHhcCCceecC--eEEEEEecCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDF-GFIHYAERSSALKAIKDTEKYEIDG--QVLEVALARP 357 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~-~fV~f~~~~~a~~a~~~~~~~~~~g--~~i~v~~a~~ 357 (479)
..|||+||++.+|+++|+++|++||.|.+|.|... +|| |||+|.+.++|..|+..|||..|.| +.|+|.+|++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 45789999999999999999999999999999753 286 9999999999999999999999988 6999999998
Q ss_pred CCC
Q 011718 358 QTN 360 (479)
Q Consensus 358 ~~~ 360 (479)
+..
T Consensus 102 ~~l 104 (124)
T 2e5i_A 102 TRL 104 (124)
T ss_dssp SCC
T ss_pred Ccc
Confidence 764
No 311
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.1e-16 Score=121.31 Aligned_cols=78 Identities=28% Similarity=0.486 Sum_probs=68.2
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCC---CCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDS---GESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.|+. +.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4578999999999999999999999999999 888888776 79999999999999999999998843 66776666
Q ss_pred eccC
Q 011718 178 SMSE 181 (479)
Q Consensus 178 ~~a~ 181 (479)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6544
No 312
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.62 E-value=1.6e-15 Score=125.09 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=71.2
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCC--Ceeeeec
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG--KTIRCSM 179 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g--~~l~v~~ 179 (479)
.-.+|||+||++.+|+++|+++|++||.|.+|+|... .++|||||+|.+.++|.+|++.|||..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3456899999999999999999999999999998753 357899999999999999999999999966 9999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
++.+.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98753
No 313
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=114.26 Aligned_cols=75 Identities=27% Similarity=0.432 Sum_probs=62.7
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCc--eecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY--EIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~--~~~g~~i~v~~a~ 356 (479)
..++|||+|||+++|+++|+++|++||.|.+|.|+.+ +||||||+|.+.++|.+ +++. .+.|+.|.|.+|.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 4589999999999999999999999999999999985 46999999999999984 3443 4669999999999
Q ss_pred CCCC
Q 011718 357 PQTN 360 (479)
Q Consensus 357 ~~~~ 360 (479)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 8754
No 314
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.2e-16 Score=119.19 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=69.6
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCc-eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC-CCCCCCeeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGE-VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS-KDFKGKTIRC 177 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~-~~~~g~~l~v 177 (479)
....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666552 478999999999999999999999 9999999999
Q ss_pred eccCCCc
Q 011718 178 SMSETNN 184 (479)
Q Consensus 178 ~~a~~~~ 184 (479)
.++.++.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9997653
No 315
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=4.5e-16 Score=123.82 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=70.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEE--EEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..+|||+|||+++|+++|+++|++| .|+ .|+|+.++.++ +|||||+|.+.++|.+||.. ++..|+|+.|.|..+.
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECC
Confidence 5789999999999999999999999 677 99999988877 99999999999999999985 7799999999999986
Q ss_pred CC
Q 011718 357 PQ 358 (479)
Q Consensus 357 ~~ 358 (479)
++
T Consensus 120 ~~ 121 (126)
T 2hgm_A 120 QE 121 (126)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 316
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=8.4e-16 Score=121.58 Aligned_cols=69 Identities=28% Similarity=0.409 Sum_probs=62.5
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeee
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~ 176 (479)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 35689999999999999999999999999999999764 8999999999999999999999999999843
No 317
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.6e-15 Score=120.35 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=70.2
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeE-EEEEecCHHHHHHHHHHhcCCCCCC--Ceeeee
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGF-AFVAFRSKEVAKRAIDELCSKDFKG--KTIRCS 178 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~e~a~~Al~~l~~~~~~g--~~l~v~ 178 (479)
.--.|||+||++.+|+++|+++|++||.|.+|+|+.. .+|+ |||+|.+.++|++|++.|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3446789999999999999999999999999998764 2577 9999999999999999999999988 899999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
+++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998764
No 318
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2e-15 Score=128.35 Aligned_cols=83 Identities=24% Similarity=0.488 Sum_probs=78.8
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||..+|+++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccC
Q 011718 179 MSE 181 (479)
Q Consensus 179 ~a~ 181 (479)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 319
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-16 Score=123.95 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=70.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
.++|||+|||+++|+++|+++|++||.|.. .++.+.. +. +|||||+|.+.++|.+||+ ||++.|.|+.|+|.++.+
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 579999999999999999999999998887 4444433 33 8999999999999999998 999999999999999988
Q ss_pred CCCC
Q 011718 358 QTNK 361 (479)
Q Consensus 358 ~~~~ 361 (479)
+..+
T Consensus 95 ~~~~ 98 (101)
T 1fj7_A 95 RDGT 98 (101)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7553
No 320
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=7.1e-16 Score=119.51 Aligned_cols=81 Identities=17% Similarity=0.396 Sum_probs=73.9
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+. +++.|+|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 35799999999999999999999999999999999988655 8999999999999999998 99999999999999987
Q ss_pred CCCC
Q 011718 358 QTNK 361 (479)
Q Consensus 358 ~~~~ 361 (479)
+...
T Consensus 86 ~~~~ 89 (102)
T 2xs2_A 86 KQNL 89 (102)
T ss_dssp CC--
T ss_pred Ccch
Confidence 7553
No 321
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.9e-16 Score=119.57 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=68.7
Q ss_pred cCCCCCCCeEEE--CCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCC----
Q 011718 97 LALPPHGSEVFI--GGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF---- 170 (479)
Q Consensus 97 ~~~~~~~~~l~V--~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~---- 170 (479)
.....+.++||| +||++.+|+++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|++.|||..|
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 334456789999 77999999999999999999999998853 378999999999999999999999977
Q ss_pred -CCCeeeeeccC
Q 011718 171 -KGKTIRCSMSE 181 (479)
Q Consensus 171 -~g~~l~v~~a~ 181 (479)
.++.|.|.++.
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 57888887764
No 322
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.1e-15 Score=130.30 Aligned_cols=82 Identities=27% Similarity=0.434 Sum_probs=76.3
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
...++|||+|||+.+++++|+++|++||.|..|.|..+..+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.+|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 346899999999999999999999999999999999988655 8999999999999999999999999999999999998
Q ss_pred CCC
Q 011718 357 PQT 359 (479)
Q Consensus 357 ~~~ 359 (479)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 654
No 323
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=2.5e-15 Score=115.99 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=73.9
Q ss_pred CCCCCeEEECCCCC-----CCCHHHHHHhhcccCceeEEEEeecCCC-CCceeEEEEEecCHHHHHHHHHHhcCCCCCCC
Q 011718 100 PPHGSEVFIGGLPK-----DASEEDLRDLCEPIGEVFEVGLVKDKDS-GESKGFAFVAFRSKEVAKRAIDELCSKDFKGK 173 (479)
Q Consensus 100 ~~~~~~l~V~nLp~-----~~te~~l~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~ 173 (479)
+.++++|+|+||.. +-++++|+++|++||.|.+|+|++++.+ ++++|+|||+|.+.++|.+|++.|||..|.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999973 2378999999999999999999998654 68899999999999999999999999999999
Q ss_pred eeeeeccCC
Q 011718 174 TIRCSMSET 182 (479)
Q Consensus 174 ~l~v~~a~~ 182 (479)
.|+|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 324
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=115.84 Aligned_cols=77 Identities=21% Similarity=0.464 Sum_probs=70.4
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|| ++|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+||..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999996 89999999999999999999984 5688999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 97654
No 325
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=1e-15 Score=149.36 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=78.9
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34589999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCC
Q 011718 181 ETN 183 (479)
Q Consensus 181 ~~~ 183 (479)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 326
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.7e-16 Score=126.47 Aligned_cols=80 Identities=19% Similarity=0.328 Sum_probs=70.7
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEE-EEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
...+|||+|||+.+|+++|+++|++||.|.. +.+.....+. +|||||+|.+.++|.+||. ||++.|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 3589999999999999999999999999987 4444444555 8999999999999999999 99999999999999998
Q ss_pred CCC
Q 011718 357 PQT 359 (479)
Q Consensus 357 ~~~ 359 (479)
++.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 327
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=114.35 Aligned_cols=77 Identities=25% Similarity=0.454 Sum_probs=66.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
.++|||+|||+.+|+++|+++|++||.|..|.|+.+ .+|||||+|.+.++|++|+.. .+.++++.|.|.++.++.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 589999999999999999999999999999999875 368999999999999865432 456799999999998876
Q ss_pred CC
Q 011718 360 NK 361 (479)
Q Consensus 360 ~~ 361 (479)
..
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 328
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=4.2e-15 Score=132.33 Aligned_cols=83 Identities=19% Similarity=0.474 Sum_probs=79.2
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||..+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCC
Q 011718 181 ETN 183 (479)
Q Consensus 181 ~~~ 183 (479)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 329
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=1.4e-14 Score=125.59 Aligned_cols=123 Identities=13% Similarity=0.183 Sum_probs=90.9
Q ss_pred hhHHHHHHHHhhcCccccCCCCceeeecCCCCCCCc--hhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccC
Q 011718 237 NACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH--SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPP 314 (479)
Q Consensus 237 ~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~ 314 (479)
...+..|+.......+.+......+........+.. ........++|||+|||+.+|+++|+++|++||.|..|+|++
T Consensus 64 ~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 64 FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE
T ss_pred HHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE
Confidence 345555655553234555555566655532221111 111234568999999999999999999999999999999998
Q ss_pred CCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCC
Q 011718 315 GKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 315 ~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
+..+. +|||||+|.+.++|.+|+..+ +..|+|+.|.|.++.....
T Consensus 144 ~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~~ 189 (193)
T 2voo_A 144 TLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYFA 189 (193)
T ss_dssp CTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC--
T ss_pred CCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHHH
Confidence 88776 999999999999999999865 4599999999999876544
No 330
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=2.9e-15 Score=128.26 Aligned_cols=81 Identities=30% Similarity=0.547 Sum_probs=77.1
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||..+|+++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred C
Q 011718 181 E 181 (479)
Q Consensus 181 ~ 181 (479)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 331
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=8.2e-15 Score=115.92 Aligned_cols=74 Identities=23% Similarity=0.329 Sum_probs=67.2
Q ss_pred eEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeE-EEEEecCHHHHHHHHHHhcCCCCCC--CeeeeeccC
Q 011718 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGF-AFVAFRSKEVAKRAIDELCSKDFKG--KTIRCSMSE 181 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~e~a~~Al~~l~~~~~~g--~~l~v~~a~ 181 (479)
.|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999999752 275 9999999999999999999999987 689999998
Q ss_pred CCc
Q 011718 182 TNN 184 (479)
Q Consensus 182 ~~~ 184 (479)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 765
No 332
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=3e-14 Score=132.31 Aligned_cols=79 Identities=23% Similarity=0.460 Sum_probs=72.3
Q ss_pred ccceEEecCCCCCCCHHHHH----HHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEE
Q 011718 279 QVKALYVKNLPENTTTKQLK----ELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 353 (479)
.+++|||+|||+.+|+++|+ ++|++||.|..|+|.+ .+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 36899999999999999977 8999999999999987 334 8999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011718 354 LARPQT 359 (479)
Q Consensus 354 ~a~~~~ 359 (479)
++....
T Consensus 86 ~a~~~~ 91 (282)
T 3pgw_A 86 YAKTDS 91 (282)
T ss_pred EeccCc
Confidence 997655
No 333
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=1.8e-15 Score=113.59 Aligned_cols=75 Identities=20% Similarity=0.367 Sum_probs=69.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
.++|||+|||+.+++++|+++|++| .|..|.|. ..+|||||+|.+.++|.+|+..||+..|+|+.|+|.++....
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 4789999999999999999999999 99999885 236999999999999999999999999999999999997654
No 334
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=2.8e-15 Score=112.49 Aligned_cols=76 Identities=37% Similarity=0.619 Sum_probs=62.5
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC--CCCCeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD--FKGKTIR 176 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~--~~g~~l~ 176 (479)
.....++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999864 78999999999999983 45554 4589999
Q ss_pred eeccCCC
Q 011718 177 CSMSETN 183 (479)
Q Consensus 177 v~~a~~~ 183 (479)
|.++.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9998764
No 335
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=6.6e-15 Score=110.41 Aligned_cols=71 Identities=24% Similarity=0.452 Sum_probs=66.5
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcC----C-------CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRH----G-------EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG 347 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g 347 (479)
..++|||+|||+++|+++|+++|++| | .|..+.+..++ |||||+|.+.++|.+|+ .||+..|+|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k----g~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----NFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS----SEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC----cEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 35899999999999999999999999 8 89999998764 99999999999999999 999999999
Q ss_pred eEEEEEe
Q 011718 348 QVLEVAL 354 (479)
Q Consensus 348 ~~i~v~~ 354 (479)
+.|+|..
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 336
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=6.4e-16 Score=127.76 Aligned_cols=79 Identities=29% Similarity=0.423 Sum_probs=69.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEE--------EccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEE
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKV--------VTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v--------~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i 350 (479)
+++|||+|||+.+|+++|+.+|++||.|..| .+. ..+. +|||||+|.+.++|.+|+..||+..|+|+.|
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM--KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE--EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec--cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 5799999999999999999999999988764 222 2334 7999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 011718 351 EVALARPQTN 360 (479)
Q Consensus 351 ~v~~a~~~~~ 360 (479)
.|.+|.+...
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999987644
No 337
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.57 E-value=1.3e-14 Score=123.67 Aligned_cols=80 Identities=21% Similarity=0.490 Sum_probs=75.9
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCC--Ceeeee
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG--KTIRCS 178 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g--~~l~v~ 178 (479)
...++|||+|||..+|+++|+++|++||.|..|+++++..++.++|||||+|.+.++|.+|+..||+..|.| ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 467899999999999999999999999999999999998889999999999999999999999999999988 999998
Q ss_pred cc
Q 011718 179 MS 180 (479)
Q Consensus 179 ~a 180 (479)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 338
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=2.3e-15 Score=128.24 Aligned_cols=80 Identities=28% Similarity=0.571 Sum_probs=76.3
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
.++|||+|||+.+|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++ +++..|.|+.|+|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5689999999999999999999999999999999998889999999999999999999997 899999999999999876
Q ss_pred C
Q 011718 183 N 183 (479)
Q Consensus 183 ~ 183 (479)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 339
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=5.3e-15 Score=129.74 Aligned_cols=85 Identities=28% Similarity=0.524 Sum_probs=80.3
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+.+|+++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCc
Q 011718 180 SETNN 184 (479)
Q Consensus 180 a~~~~ 184 (479)
+.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87653
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=2.7e-15 Score=112.52 Aligned_cols=71 Identities=27% Similarity=0.541 Sum_probs=65.9
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhccc----C-------ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPI----G-------EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~ 170 (479)
..++|||+|||+++|+++|+++|++| | .|.+|++.++ +|||||+|.+.++|.+|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46799999999999999999999999 8 8999998643 799999999999999999 9999999
Q ss_pred CCCeeeeec
Q 011718 171 KGKTIRCSM 179 (479)
Q Consensus 171 ~g~~l~v~~ 179 (479)
.|+.|+|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999874
No 341
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=1.1e-14 Score=127.69 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=71.9
Q ss_pred cceEEecCCC-CCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLP-ENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~-~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
+++|||+||| +.+|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+||..||+..|.|+.|+|.+++.+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 5799999999 899999999999999999999998754 589999999999999999999999999999999999765
Q ss_pred C
Q 011718 359 T 359 (479)
Q Consensus 359 ~ 359 (479)
.
T Consensus 81 ~ 81 (205)
T 3tyt_A 81 A 81 (205)
T ss_dssp C
T ss_pred c
Confidence 4
No 342
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=9.6e-15 Score=129.45 Aligned_cols=81 Identities=16% Similarity=0.308 Sum_probs=74.6
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
+.++|||+|||+++|+++|+++|++||.|.+|+|++++.+ + +|||||+|.+.++|.+||..+++..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4579999999999999999999999999999999988763 3 8999999999999999999999999999999999987
Q ss_pred CCC
Q 011718 357 PQT 359 (479)
Q Consensus 357 ~~~ 359 (479)
...
T Consensus 94 ~~~ 96 (213)
T 4f02_A 94 RDP 96 (213)
T ss_dssp CCT
T ss_pred ccc
Confidence 654
No 343
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1e-14 Score=116.02 Aligned_cols=78 Identities=21% Similarity=0.453 Sum_probs=70.9
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.+...++|||+|| ++|+++|+++|++||.|.+|.|. .++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456889999996 69999999999999999999985 568999999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
++.+..
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998653
No 344
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.7e-15 Score=114.41 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=69.1
Q ss_pred ceEEecCC----CCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCC----hHH----HHHHHH--hcCCce
Q 011718 281 KALYVKNL----PENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAE----RSS----ALKAIK--DTEKYE 344 (479)
Q Consensus 281 ~~l~v~nl----~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~----~~~----a~~a~~--~~~~~~ 344 (479)
+.|||+|| |+.+++..|+++|++||.|..|.++.++.+. +|||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999864 9999999996 333 889988 789999
Q ss_pred ecCeEEEEEecCC
Q 011718 345 IDGQVLEVALARP 357 (479)
Q Consensus 345 ~~g~~i~v~~a~~ 357 (479)
|+|+.|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 345
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.55 E-value=1e-14 Score=127.69 Aligned_cols=83 Identities=24% Similarity=0.507 Sum_probs=75.6
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||+.+|+++|+++|++||.|..|+|+.+..++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999999988899999999999999999999975 899999999999998
Q ss_pred CCCc
Q 011718 181 ETNN 184 (479)
Q Consensus 181 ~~~~ 184 (479)
.++.
T Consensus 181 ~~k~ 184 (196)
T 1l3k_A 181 LSKQ 184 (196)
T ss_dssp C---
T ss_pred CChh
Confidence 7654
No 346
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.55 E-value=2.2e-14 Score=122.01 Aligned_cols=79 Identities=25% Similarity=0.519 Sum_probs=73.8
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCe--eeeec
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKT--IRCSM 179 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~--l~v~~ 179 (479)
..++|||+|||..+|+++|+++|++||.|..|+++.+..++.++|||||+|.+.++|.+|++.||+..|.|+. |+|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4678999999999999999999999999999999999888999999999999999999999999999999975 77765
Q ss_pred c
Q 011718 180 S 180 (479)
Q Consensus 180 a 180 (479)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.2e-14 Score=110.70 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=69.9
Q ss_pred ccceEEecCCCC-----CCCHHHHHHHHhcCCCEEEEEccCCCC--CC-CceEEEEeCChHHHHHHHHhcCCceecCeEE
Q 011718 279 QVKALYVKNLPE-----NTTTKQLKELFQRHGEVTKVVTPPGKS--GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350 (479)
Q Consensus 279 ~~~~l~v~nl~~-----~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i 350 (479)
.+++|+|.||.. +.++++|+++|++||.|.+|.|+.++. +. +|||||+|.+.++|.+|+..|||+.|+||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 468999999963 237899999999999999999998754 23 8999999999999999999999999999999
Q ss_pred EEEecCC
Q 011718 351 EVALARP 357 (479)
Q Consensus 351 ~v~~a~~ 357 (479)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999975
No 348
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=2.6e-14 Score=122.66 Aligned_cols=80 Identities=25% Similarity=0.500 Sum_probs=73.6
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCC---CCeeee
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK---GKTIRC 177 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~---g~~l~v 177 (479)
...++|||+|||+.+|+++|+++|++||.|..|+++++.. +.++|||||+|.+.++|.+|++.||+..+. ++.|+|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 3567899999999999999999999999999999999864 999999999999999999999999998776 499999
Q ss_pred eccC
Q 011718 178 SMSE 181 (479)
Q Consensus 178 ~~a~ 181 (479)
.+|.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 349
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3e-15 Score=112.47 Aligned_cols=77 Identities=29% Similarity=0.469 Sum_probs=65.3
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|++|+. ....+.++.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35689999999999999999999999999999999754 68999999999999986532 133458999999998
Q ss_pred CCCc
Q 011718 181 ETNN 184 (479)
Q Consensus 181 ~~~~ 184 (479)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 350
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=1.7e-14 Score=124.92 Aligned_cols=78 Identities=26% Similarity=0.471 Sum_probs=71.7
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
.++|||+|||+++|+++|+++|++||.|..|+|+++.. +.++|||||+|.+.++|.+|+..+ +..|.|+.|+|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 46899999999999999999999999999999999865 899999999999999999999754 5689999999998764
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=1.2e-14 Score=115.68 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=69.4
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|||+|| ++|+++|+++|++||.|..|.|... +|||||+|.+.++|.+|+..|++..|+|+.|+|.++.++
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~----kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT----TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3689999996 6999999999999999999999633 599999999999999999999999999999999999887
Q ss_pred CCC
Q 011718 359 TNK 361 (479)
Q Consensus 359 ~~~ 361 (479)
...
T Consensus 112 ~~~ 114 (121)
T 2bz2_A 112 PML 114 (121)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 352
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=112.86 Aligned_cols=76 Identities=21% Similarity=0.378 Sum_probs=66.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC----C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG----K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~----~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
.++|||+|||+.+|+++|+++|++||.|. +.++.+..+ . +|||||+|.+.++|.+||..|+ .++|+.|.+..
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~ 84 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVS 84 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence 57899999999999999999999999999 888777653 4 8999999999999999999984 58888888876
Q ss_pred cCCC
Q 011718 355 ARPQ 358 (479)
Q Consensus 355 a~~~ 358 (479)
+...
T Consensus 85 ~~~~ 88 (114)
T 2dnl_A 85 SPTI 88 (114)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 5543
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.7e-14 Score=110.96 Aligned_cols=85 Identities=27% Similarity=0.363 Sum_probs=72.5
Q ss_pred CCCCCCCeEEECCCCCCCC-----------HHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc
Q 011718 98 ALPPHGSEVFIGGLPKDAS-----------EEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~t-----------e~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~ 166 (479)
..+.++++|+|+||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 4567889999999954332 5799999999999999966 443 379999999999999999999999
Q ss_pred CCCCCCCeeeeeccCCCcee
Q 011718 167 SKDFKGKTIRCSMSETNNRL 186 (479)
Q Consensus 167 ~~~~~g~~l~v~~a~~~~~l 186 (479)
+..|.|+.|+|.++.++...
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999998876543
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.4e-14 Score=126.44 Aligned_cols=80 Identities=18% Similarity=0.376 Sum_probs=71.3
Q ss_pred CCCCCCeEEECCCCCCC---------CHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC
Q 011718 99 LPPHGSEVFIGGLPKDA---------SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD 169 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~---------te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~ 169 (479)
.....++|||+||+..+ |+++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35578999999999998 7999999999999999999985 47899999999999999999999999
Q ss_pred C------------CCCeeeeeccCCCc
Q 011718 170 F------------KGKTIRCSMSETNN 184 (479)
Q Consensus 170 ~------------~g~~l~v~~a~~~~ 184 (479)
| .|+.|.|.||....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999997643
No 355
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=2.4e-14 Score=126.40 Aligned_cols=79 Identities=20% Similarity=0.361 Sum_probs=70.2
Q ss_pred hccceEEecCCCCCC---------CHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCcee---
Q 011718 278 SQVKALYVKNLPENT---------TTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI--- 345 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~---------~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~--- 345 (479)
..+++|||+||+..+ ++++|+.+|++||.|..|+|+..+ |||||+|.+.++|..|+..|++..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k----G~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK----NCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG----TEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC----CEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 346899999999998 799999999999999999998654 9999999999999999999999999
Q ss_pred ---------cCeEEEEEecCCCCC
Q 011718 346 ---------DGQVLEVALARPQTN 360 (479)
Q Consensus 346 ---------~g~~i~v~~a~~~~~ 360 (479)
.|+.|.|.||.....
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-13 Score=108.59 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=69.0
Q ss_pred ccceEEecCCCCCCC-----------HHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecC
Q 011718 279 QVKALYVKNLPENTT-----------TKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG 347 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~-----------~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g 347 (479)
.+++|+|.||....+ +++|+++|++||.|..|.|. ++. .+|||||+|.+.++|.+|+..||++.|+|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~-~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH-PDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC-TTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC-CCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 368999999954332 58999999999999999773 332 47999999999999999999999999999
Q ss_pred eEEEEEecCCCCCC
Q 011718 348 QVLEVALARPQTNK 361 (479)
Q Consensus 348 ~~i~v~~a~~~~~~ 361 (479)
+.|+|.++.++...
T Consensus 92 r~l~v~~a~~~~~~ 105 (112)
T 2dit_A 92 RQITAQAWDGTTDY 105 (112)
T ss_dssp EECEEEECCSCCCS
T ss_pred cEEEEEEeCCCCCc
Confidence 99999999887543
No 357
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=1.4e-13 Score=106.31 Aligned_cols=78 Identities=17% Similarity=0.286 Sum_probs=68.5
Q ss_pred cceEEecCC--CCCCC--------HHHHHHHHhcCCCEEEEEccCCCCC---C-CceEEEEeCChHHHHHHHHhcCCcee
Q 011718 280 VKALYVKNL--PENTT--------TKQLKELFQRHGEVTKVVTPPGKSG---K-RDFGFIHYAERSSALKAIKDTEKYEI 345 (479)
Q Consensus 280 ~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~v~~v~~~~~~~~---~-~g~~fV~f~~~~~a~~a~~~~~~~~~ 345 (479)
+++|.|.|+ |..+. .++|++.|++||.|.+|.|+++..+ . +|+|||+|.+.++|.+|+..|||+.+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 578999998 33332 3789999999999999999988753 3 89999999999999999999999999
Q ss_pred cCeEEEEEecCC
Q 011718 346 DGQVLEVALARP 357 (479)
Q Consensus 346 ~g~~i~v~~a~~ 357 (479)
+||.|+|.++..
T Consensus 85 ~GR~i~v~~~~~ 96 (105)
T 3v4m_A 85 ANRVVVTKYCDP 96 (105)
T ss_dssp TTEECEEEEECH
T ss_pred CCCEEEEEEeCH
Confidence 999999999864
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=4.8e-14 Score=108.85 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=71.5
Q ss_pred CCCCeEEECCC--CCCCC--------HHHHHHhhcccCceeEEEEeecCCC--CCceeEEEEEecCHHHHHHHHHHhcCC
Q 011718 101 PHGSEVFIGGL--PKDAS--------EEDLRDLCEPIGEVFEVGLVKDKDS--GESKGFAFVAFRSKEVAKRAIDELCSK 168 (479)
Q Consensus 101 ~~~~~l~V~nL--p~~~t--------e~~l~~~f~~~G~i~~v~i~~~~~~--g~~~g~afV~F~~~e~a~~Al~~l~~~ 168 (479)
.++++|.|.|+ |.++. +++|+++|++||.|.+|+|+++..+ ++++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36789999998 44443 3689999999999999999988764 368999999999999999999999999
Q ss_pred CCCCCeeeeeccCC
Q 011718 169 DFKGKTIRCSMSET 182 (479)
Q Consensus 169 ~~~g~~l~v~~a~~ 182 (479)
.+.||.|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999988753
No 359
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=4.5e-14 Score=121.17 Aligned_cols=78 Identities=21% Similarity=0.409 Sum_probs=71.4
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||..+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356799999999999999999999999988665 456899999999999999999999999999999999999998
Q ss_pred CCC
Q 011718 181 ETN 183 (479)
Q Consensus 181 ~~~ 183 (479)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 360
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.45 E-value=1.7e-13 Score=122.83 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=74.2
Q ss_pred hccceEEecCCCC-CCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 278 SQVKALYVKNLPE-NTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 278 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..+++|||+|||+ .+++++|+++|++||.|..|.|..++ +|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4468999999999 99999999999999999999999876 5899999999999999999999999999999999998
Q ss_pred CCCC
Q 011718 357 PQTN 360 (479)
Q Consensus 357 ~~~~ 360 (479)
....
T Consensus 109 ~~~~ 112 (229)
T 2adc_A 109 HQNV 112 (229)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7643
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=4.3e-14 Score=108.99 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=63.4
Q ss_pred ecCCCCCCCHHHHHHHH------------hcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEE
Q 011718 285 VKNLPENTTTKQLKELF------------QRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351 (479)
Q Consensus 285 v~nl~~~~~~~~l~~~f------------~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~ 351 (479)
+.||++.+++++|+++| ++||.|.+|.|+++..++ +|||||+|.+.++|.+|+..|||+.|+|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777888887777666 999999999999887766 89999999999999999999999999999999
Q ss_pred EEec
Q 011718 352 VALA 355 (479)
Q Consensus 352 v~~a 355 (479)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=1.5e-13 Score=108.06 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=71.4
Q ss_pred CCCCeEEECCCCC--CC---CHHHHHHhhcccCceeEEEEeecCC----CCCceeEEEEEecCHHHHHHHHHHhcCCCCC
Q 011718 101 PHGSEVFIGGLPK--DA---SEEDLRDLCEPIGEVFEVGLVKDKD----SGESKGFAFVAFRSKEVAKRAIDELCSKDFK 171 (479)
Q Consensus 101 ~~~~~l~V~nLp~--~~---te~~l~~~f~~~G~i~~v~i~~~~~----~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~ 171 (479)
+++++|+|.|+-. ++ .+++|++.|++||.|.+|+|++++. +++++|++||+|.+.++|.+|++.|||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3788999999942 22 3688999999999999999999865 3577899999999999999999999999999
Q ss_pred CCeeeeeccC
Q 011718 172 GKTIRCSMSE 181 (479)
Q Consensus 172 g~~l~v~~a~ 181 (479)
||.|+|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999998875
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=2.2e-13 Score=119.39 Aligned_cols=78 Identities=23% Similarity=0.318 Sum_probs=73.0
Q ss_pred cceEEecCCCC-CCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPE-NTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
+++|||+|||+ .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+|+..|++..|.|+.|.|.++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 47999999999 99999999999999999999999876 589999999999999999999999999999999999876
Q ss_pred CC
Q 011718 359 TN 360 (479)
Q Consensus 359 ~~ 360 (479)
..
T Consensus 80 ~~ 81 (198)
T 1qm9_A 80 NV 81 (198)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=5.6e-14 Score=108.37 Aligned_cols=72 Identities=28% Similarity=0.458 Sum_probs=62.4
Q ss_pred ECCCCCCCCHHHHHHhh------------cccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 108 IGGLPKDASEEDLRDLC------------EPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 108 V~nLp~~~te~~l~~~f------------~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
+.|||+.+|+++|+++| ++||.|.+|+|+++.. ++++|||||+|.+.++|.+|+..|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666777666555 9999999999998765 7899999999999999999999999999999999
Q ss_pred eeecc
Q 011718 176 RCSMS 180 (479)
Q Consensus 176 ~v~~a 180 (479)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 365
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.39 E-value=6.3e-13 Score=121.59 Aligned_cols=77 Identities=30% Similarity=0.456 Sum_probs=71.4
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
...++|||+|||+++|+++|+++|++||.|..|.|.+++ |||||+|.+.++|.+|+..|++..|.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k----g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR----GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT----TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 345799999999999999999999999999999997654 9999999999999999999999999999999999975
Q ss_pred C
Q 011718 358 Q 358 (479)
Q Consensus 358 ~ 358 (479)
.
T Consensus 96 ~ 96 (261)
T 3sde_A 96 G 96 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=6e-13 Score=104.61 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=68.7
Q ss_pred ccceEEecCCCC--CC---CHHHHHHHHhcCCCEEEEEccCCCCC-----C-CceEEEEeCChHHHHHHHHhcCCceecC
Q 011718 279 QVKALYVKNLPE--NT---TTKQLKELFQRHGEVTKVVTPPGKSG-----K-RDFGFIHYAERSSALKAIKDTEKYEIDG 347 (479)
Q Consensus 279 ~~~~l~v~nl~~--~~---~~~~l~~~f~~~G~v~~v~~~~~~~~-----~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g 347 (479)
++++|+|.|+-. .+ .+++|++.|++||.|.+|.|+++..+ . +|++||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 468999999842 22 35899999999999999999987542 2 7999999999999999999999999999
Q ss_pred eEEEEEecCC
Q 011718 348 QVLEVALARP 357 (479)
Q Consensus 348 ~~i~v~~a~~ 357 (479)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.7e-12 Score=97.53 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCCC
Q 011718 290 ENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361 (479)
Q Consensus 290 ~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~~ 361 (479)
..+|+++|+++|++||.|..|.|+. ..+|||||+|.+.++|.+|+..+++ +.++.|+|.|+.++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 5689999999999999999999983 2379999999999999999998554 68999999999877543
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8.1e-12 Score=94.89 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=62.2
Q ss_pred CCeEEECCCC-------CCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 103 GSEVFIGGLP-------KDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 103 ~~~l~V~nLp-------~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
..+|.|.-.. ..+|+++|+++|++||.|..|.|+ ++++|||||+|.+.++|.+|++.++ .+.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 3456555544 458999999999999999999997 4679999999999999999998644 4689999
Q ss_pred eeeccCCCc
Q 011718 176 RCSMSETNN 184 (479)
Q Consensus 176 ~v~~a~~~~ 184 (479)
+|.++....
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987643
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=5.7e-12 Score=117.52 Aligned_cols=74 Identities=23% Similarity=0.417 Sum_probs=65.4
Q ss_pred ccceEEecC--CCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceec---Ce--EEE
Q 011718 279 QVKALYVKN--LPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEID---GQ--VLE 351 (479)
Q Consensus 279 ~~~~l~v~n--l~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~---g~--~i~ 351 (479)
++++|||+| |++.+|+++|+++|++||.|..|.+... ||||||+|.+.++|++|++.|||..+- |+ .|.
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~----kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT----CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 468999999 5889999999999999999999999763 499999999999999999999998773 44 678
Q ss_pred EEecC
Q 011718 352 VALAR 356 (479)
Q Consensus 352 v~~a~ 356 (479)
|.|+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 88875
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.30 E-value=7.6e-12 Score=97.54 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=66.5
Q ss_pred ccceEEecCCCCCC----------CHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCe
Q 011718 279 QVKALYVKNLPENT----------TTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQ 348 (479)
Q Consensus 279 ~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~ 348 (479)
++++|.|.|+=... .+++|++.|++||.|.+|.|.++. .+|||||+|.+.++|.+|+..|||..|+||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35789999984322 236889999999999999997764 379999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 011718 349 VLEVALARPQ 358 (479)
Q Consensus 349 ~i~v~~a~~~ 358 (479)
.|.|.++...
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999998643
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.28 E-value=7.5e-12 Score=97.57 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=66.7
Q ss_pred CCCCCeEEECCCCCCC----------CHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC
Q 011718 100 PPHGSEVFIGGLPKDA----------SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD 169 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~----------te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~ 169 (479)
+.++++|.|.|+=... .+++|++.|++||.|.+|.|.++. .+|+|||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568899999985322 235688999999999999986652 58999999999999999999999999
Q ss_pred CCCCeeeeeccC
Q 011718 170 FKGKTIRCSMSE 181 (479)
Q Consensus 170 ~~g~~l~v~~a~ 181 (479)
|.||.|+|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999875
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=7.1e-12 Score=116.88 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=67.0
Q ss_pred ccCCCCCCCeEEECC--CCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCC---
Q 011718 96 LLALPPHGSEVFIGG--LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF--- 170 (479)
Q Consensus 96 ~~~~~~~~~~l~V~n--Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~--- 170 (479)
......++++|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 334466888999999 578999999999999999999987743 479999999999999999999999976
Q ss_pred CCC--eeeeeccC
Q 011718 171 KGK--TIRCSMSE 181 (479)
Q Consensus 171 ~g~--~l~v~~a~ 181 (479)
.|+ .|.|.++.
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 345 56666653
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=8.1e-11 Score=91.56 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=68.3
Q ss_pred hccceEEecCCCCC-CCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCC-hHHHHHHHHhcC--CceecCeEEEEE
Q 011718 278 SQVKALYVKNLPEN-TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAE-RSSALKAIKDTE--KYEIDGQVLEVA 353 (479)
Q Consensus 278 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~-~~~a~~a~~~~~--~~~~~g~~i~v~ 353 (479)
..+..|+|+||++. ++.++|+++|++||.|..|.+..+. ..|||+|.+ ..+|..|+..|+ +..|++..+++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 34689999999999 9999999999999999999999988 479999999 899999999996 788999999998
Q ss_pred ecC
Q 011718 354 LAR 356 (479)
Q Consensus 354 ~a~ 356 (479)
+..
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1e-10 Score=90.96 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=67.1
Q ss_pred CCCCCCeEEECCCCCC-CCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecC-HHHHHHHHHHhc--CCCCCCCe
Q 011718 99 LPPHGSEVFIGGLPKD-ASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRS-KEVAKRAIDELC--SKDFKGKT 174 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~-~e~a~~Al~~l~--~~~~~g~~ 174 (479)
.-+.++.|+|+||+.. ++.++|+++|++||.|..|.++++.. +|||.|.+ ..+|..|+..|+ +..|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4567899999999999 99999999999999999999988754 59999999 899999999985 66788888
Q ss_pred eeeecc
Q 011718 175 IRCSMS 180 (479)
Q Consensus 175 l~v~~a 180 (479)
+++...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 877654
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.5e-10 Score=83.90 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=60.7
Q ss_pred ceEEecCCCC----CCCH----HHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEE
Q 011718 281 KALYVKNLPE----NTTT----KQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352 (479)
Q Consensus 281 ~~l~v~nl~~----~~~~----~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v 352 (479)
.+|+|.-++. ...+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+|+. |||..|+||.|+|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 5677776652 2222 6789999999999999999966 8999999999999998 9999999999999
Q ss_pred EecCCC
Q 011718 353 ALARPQ 358 (479)
Q Consensus 353 ~~a~~~ 358 (479)
.++++.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 999865
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=84.14 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=63.1
Q ss_pred CCCCCeEEECCCCC----CCCH----HHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCC
Q 011718 100 PPHGSEVFIGGLPK----DASE----EDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK 171 (479)
Q Consensus 100 ~~~~~~l~V~nLp~----~~te----~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~ 171 (479)
-++..||+|.-++. ..-. .+|.+.|++||.|..|+|+.++ +||+|.+.++|.+|++ |||..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 35677888888772 2333 5688999999999999998763 8999999999999998 9999999
Q ss_pred CCeeeeeccCC
Q 011718 172 GKTIRCSMSET 182 (479)
Q Consensus 172 g~~l~v~~a~~ 182 (479)
||.|+|+.+++
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999998875
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1e-09 Score=79.81 Aligned_cols=71 Identities=14% Similarity=0.262 Sum_probs=60.9
Q ss_pred cceEEecCCCCC------CCH---HHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEE
Q 011718 280 VKALYVKNLPEN------TTT---KQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350 (479)
Q Consensus 280 ~~~l~v~nl~~~------~~~---~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i 350 (479)
..+|+|.-++.. ..+ .+|.+.|++||.|..++|..++ +||+|.+.++|.+||. |++..|+||.|
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 368888887632 332 5688999999999999999876 9999999999999998 99999999999
Q ss_pred EEEecCC
Q 011718 351 EVALARP 357 (479)
Q Consensus 351 ~v~~a~~ 357 (479)
+|.+..+
T Consensus 88 ~V~~k~~ 94 (95)
T 1ufw_A 88 KISGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEeccCC
Confidence 9998654
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=7.2e-10 Score=80.64 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=64.1
Q ss_pred cCCCCCCCeEEECCCCCC-----CCH----HHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 011718 97 LALPPHGSEVFIGGLPKD-----ASE----EDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS 167 (479)
Q Consensus 97 ~~~~~~~~~l~V~nLp~~-----~te----~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~ 167 (479)
...-++..||+|.-++.. .-. .+|.+.|++||.|..|+|+.++ +||+|.+.++|.+||+ |++
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGG
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCC
Confidence 345677889999998743 222 5588999999999999998873 9999999999999998 999
Q ss_pred CCCCCCeeeeeccC
Q 011718 168 KDFKGKTIRCSMSE 181 (479)
Q Consensus 168 ~~~~g~~l~v~~a~ 181 (479)
..+.||.|+|+...
T Consensus 80 ~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 80 MKVKGRAVKISGPS 93 (95)
T ss_dssp SEETTEEEEEECCC
T ss_pred eeeCCeEEEEeccC
Confidence 99999999998753
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.77 E-value=1.6e-08 Score=89.85 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=68.7
Q ss_pred CCCCCCeEEECCCCC-----CCCHHHHHHhhcccCceeEEEEeecCC----CCCceeEEEEEecCHHHHHHHHHHhcCCC
Q 011718 99 LPPHGSEVFIGGLPK-----DASEEDLRDLCEPIGEVFEVGLVKDKD----SGESKGFAFVAFRSKEVAKRAIDELCSKD 169 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~-----~~te~~l~~~f~~~G~i~~v~i~~~~~----~g~~~g~afV~F~~~e~a~~Al~~l~~~~ 169 (479)
.....+.+.+.|+-. .-.+++|++.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|+..|||..
T Consensus 120 ~~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 120 SAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199 (222)
T ss_dssp SCCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce
Confidence 334455666666642 235678999999999999999986644 45899999999999999999999999999
Q ss_pred CCCCeeeeeccC
Q 011718 170 FKGKTIRCSMSE 181 (479)
Q Consensus 170 ~~g~~l~v~~a~ 181 (479)
+.||.|+|.+..
T Consensus 200 ~~gr~i~~~~~~ 211 (222)
T 3dxb_A 200 FAGRKVVAEVYD 211 (222)
T ss_dssp SSSSBCEEEECC
T ss_pred ECCeEEEEEEcC
Confidence 999999998875
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=1.7e-08 Score=89.69 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=58.5
Q ss_pred CCHHHHHHHHhcCCCEEEEEccCCCCC-----C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 292 TTTKQLKELFQRHGEVTKVVTPPGKSG-----K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 292 ~~~~~l~~~f~~~G~v~~v~~~~~~~~-----~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
-.+++|++.|++||.|.+|.|+++..+ . +|++||+|.+.++|.+|+..|||..++||.|.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 356899999999999999999755432 4 89999999999999999999999999999999999753
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=6.2e-08 Score=71.72 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=66.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcC-----CCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRH-----GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~-----G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
.++|-|-|||..+++..|+.+++.+ |.|++|.+..+. +-|+|+|.+...|.+|...|+|..|.|+.|+|.-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4789999999999999999999999 999999999999 5699999999999999999999999999999864
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=6.6e-07 Score=66.26 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=66.4
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhccc-----CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeee
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPI-----GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~-----G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~ 176 (479)
..++|-|-|||..++...|+.|+..+ |.|..|.++.+. +=|+|+|.+...|-+|.-.|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47899999999999999999999999 999999998874 3599999999999999999999999999999
Q ss_pred eec
Q 011718 177 CSM 179 (479)
Q Consensus 177 v~~ 179 (479)
|..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 854
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=5.8e-06 Score=60.91 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=72.3
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcc-----cCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEP-----IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~-----~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
...++|.|.|||..+.++.|.-+|+. =|.|..|.... ..|+|+|.+.+.|++.|+. ..+.|.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 35678999999999999999999966 25898888753 4699999999999999963 4788999999
Q ss_pred eeeccCC--CceeeccCCCCCcC
Q 011718 176 RCSMSET--NNRLFIGNVPKSWT 196 (479)
Q Consensus 176 ~v~~a~~--~~~l~v~nl~~~~~ 196 (479)
.|.+..+ ..+|++.+|++.++
T Consensus 77 sV~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCCCCC
T ss_pred EEEcCCCCCcceEeeecCCCCCC
Confidence 9988654 46899999988754
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=2.3e-05 Score=58.09 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=63.9
Q ss_pred cceEEecCCCCCC-C----HHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 280 VKALYVKNLPENT-T----TKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 280 ~~~l~v~nl~~~~-~----~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
.++|+|.||+..+ . .+.++.+|..|+.+......+.- .-..|.|.+.++|.+|...||+..++|+.|+|-+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 3689999998866 2 26789999999988777666654 2479999999999999999999999999999999
Q ss_pred cCCCC
Q 011718 355 ARPQT 359 (479)
Q Consensus 355 a~~~~ 359 (479)
+++..
T Consensus 81 gq~~~ 85 (104)
T 1wey_A 81 AQTLH 85 (104)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 98543
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=0.00019 Score=52.90 Aligned_cols=75 Identities=21% Similarity=0.281 Sum_probs=63.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcC-----CCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRH-----GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~-----G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
.++|.|.|||..+.++.|.-+|++- |.|..|.... +-|+|+|.+...|++.|+. ..|.|++..|.|..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence 4789999999999999999999872 4899998876 3599999999999999973 47899999999988
Q ss_pred cCCCCCC
Q 011718 355 ARPQTNK 361 (479)
Q Consensus 355 a~~~~~~ 361 (479)
..++...
T Consensus 81 ~~~~~~~ 87 (104)
T 2dhx_A 81 APPRAPA 87 (104)
T ss_dssp CCCCCCC
T ss_pred CCCCCcc
Confidence 7666543
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.75 E-value=9.3e-05 Score=54.01 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=58.6
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCC--ceeEEEEEecCHHHHHHHHHHhcCCCCCCC
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE--SKGFAFVAFRSKEVAKRAIDELCSKDFKGK 173 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~--~~g~afV~F~~~e~a~~Al~~l~~~~~~g~ 173 (479)
++|.|++||+.+|++++.+.+..+..+.....+..+.+.. ...-|||.|.+.+++....+.++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4799999999999999999999998888877777654332 335699999999999999999999876543
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.57 E-value=6.7e-05 Score=55.61 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=62.2
Q ss_pred CCeEEECCCCCCC-CH----HHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 103 GSEVFIGGLPKDA-SE----EDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 103 ~~~l~V~nLp~~~-te----~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
.++|+|.||+.++ +. ..++.+|..|+++......+.- .-..|.|.+.++|.+|...|++..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3589999999765 32 4678999999998887776543 24799999999999999999999999999999
Q ss_pred eccCC
Q 011718 178 SMSET 182 (479)
Q Consensus 178 ~~a~~ 182 (479)
.++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99873
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.40 E-value=0.00098 Score=48.60 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=60.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC----CceEEEEeCChHHHHHHHHhcCCceecC-----eEEE
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK----RDFGFIHYAERSSALKAIKDTEKYEIDG-----QVLE 351 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~----~g~~fV~f~~~~~a~~a~~~~~~~~~~g-----~~i~ 351 (479)
.+|.|++||+.+|++++.+.+.....+........+... -.-|+|.|.+.+++..-...++|+.+-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 479999999999999999999999888777665554322 3569999999999999999999987643 2344
Q ss_pred EEecC
Q 011718 352 VALAR 356 (479)
Q Consensus 352 v~~a~ 356 (479)
|.+|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55553
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.29 E-value=0.0013 Score=50.30 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=58.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecC-eEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG-QVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g-~~i~v~~a~~ 357 (479)
.+-|.|-+.|... ...|...|++||.|.+...... ..+-.|.|.+..+|++||. .||..|++ -.|-|.....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCC
Confidence 4678999999875 5678888999999999887322 2689999999999999998 59999985 6677777543
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.11 E-value=0.001 Score=50.81 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=56.0
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCC-Ceeeeecc
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG-KTIRCSMS 180 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g-~~l~v~~a 180 (479)
..+.|.|-+.|... ...|..+|++||.|++.... ....+-.|.|.+..+|++||.+ ||..|.+ --|-|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 35689999999885 56688899999999988762 2245899999999999999964 9988875 34555544
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.04 E-value=0.00054 Score=50.20 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=52.3
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCC--ceeEEEEEecCHHHHHHHHHHhcCCCCCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE--SKGFAFVAFRSKEVAKRAIDELCSKDFKG 172 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~--~~g~afV~F~~~e~a~~Al~~l~~~~~~g 172 (479)
+-+|.|+.||+.+|++++.+.+..+=.+.....+..+.+-. .-.-|||.|.+.+++....+.++|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 45799999999999999998887765554444444333221 22459999999999999999999877654
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.01 E-value=0.002 Score=46.78 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=44.1
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~ 166 (479)
...++| ++|......||.++|+.||-| .|+-+-| ..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 334555 999999999999999999954 3444443 269999999999999998764
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.69 E-value=0.0031 Score=46.02 Aligned_cols=53 Identities=26% Similarity=0.403 Sum_probs=43.2
Q ss_pred EEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc
Q 011718 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166 (479)
Q Consensus 106 l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~ 166 (479)
||+-++|....-.+|.++|+.||.| .|+-+-+ ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4444999999999999999999943 4555444 269999999999999998765
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.61 E-value=0.0045 Score=44.98 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=42.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~ 341 (479)
..++| ++|..+...+|.++|+.||.|. |.-+.+ ..|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-----TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 56666 9999999999999999998332 222222 379999999999999999763
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.55 E-value=0.008 Score=44.01 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=57.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC----CceEEEEeCChHHHHHHHHhcCCceecC-----eEE
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK----RDFGFIHYAERSSALKAIKDTEKYEIDG-----QVL 350 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~----~g~~fV~f~~~~~a~~a~~~~~~~~~~g-----~~i 350 (479)
+-+|.|+.||+.+|++++.+.++..-.+........+... -.-|+|.|.+.++...-...++|+.+-+ .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4579999999999999999888876666554444433221 2458999999999999999999986643 245
Q ss_pred EEEecC
Q 011718 351 EVALAR 356 (479)
Q Consensus 351 ~v~~a~ 356 (479)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566653
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.55 E-value=0.0026 Score=46.41 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=43.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~ 341 (479)
..++| ++|..+...+|.++|+.||.| .|.-+.+. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 45667 999999999999999999833 33333333 79999999999999999764
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.74 E-value=0.015 Score=45.03 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=55.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEE-EEccCCC-------------CC--CCceEEEEeCChHHHHHHHHhcCCce
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGK-------------SG--KRDFGFIHYAERSSALKAIKDTEKYE 344 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-v~~~~~~-------------~~--~~g~~fV~f~~~~~a~~a~~~~~~~~ 344 (479)
.-|.|-+.|.+.+ ..|.+.|++||.|.. +.+.+.. .. ...+..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 5688888887655 456678999999876 3222100 00 13678999999999999998 59999
Q ss_pred ecCeEEEEEecCC
Q 011718 345 IDGQVLEVALARP 357 (479)
Q Consensus 345 ~~g~~i~v~~a~~ 357 (479)
|+|..|-|....+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888887754
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.63 E-value=0.006 Score=58.88 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=42.6
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHH
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~ 163 (479)
.|+|+|. .|..+++.+|.++|++||+|.++.+.++. .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4689997 79999999999999999999999887653 2699999999999998774
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.40 E-value=0.0069 Score=46.90 Aligned_cols=77 Identities=13% Similarity=0.240 Sum_probs=54.1
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEE-Eeec--------CCCC-----CceeEEEEEecCHHHHHHHHHHhcCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG-LVKD--------KDSG-----ESKGFAFVAFRSKEVAKRAIDELCSK 168 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~-i~~~--------~~~g-----~~~g~afV~F~~~e~a~~Al~~l~~~ 168 (479)
...|.|-+.|...+. .|.+.|++||.|.+-. +.+. +.+. ....+..|+|.+..+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 457889999877654 5778999999986621 1110 0000 1245779999999999999965 999
Q ss_pred CCCCCeeeeeccC
Q 011718 169 DFKGKTIRCSMSE 181 (479)
Q Consensus 169 ~~~g~~l~v~~a~ 181 (479)
.|.|.-|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877776654
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.11 E-value=0.0088 Score=57.72 Aligned_cols=56 Identities=7% Similarity=0.217 Sum_probs=43.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHh
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 339 (479)
.++|+|. .|..+++.+|.++|++||.|.++.+..++. .||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 4789998 799999999999999999999999987553 6999999999999877653
No 401
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=88.02 E-value=2.6 Score=29.59 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=56.0
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCc-------eecCeEEE
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY-------EIDGQVLE 351 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~-------~~~g~~i~ 351 (479)
+++-|.|-|+|..+-..++.-.....|.--.|..+. |.|.|.|.+.++...|+..|-++ .|.|..+.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 356788999999999988888888888777777766 67999999999999999876432 45666666
Q ss_pred EEecCC
Q 011718 352 VALARP 357 (479)
Q Consensus 352 v~~a~~ 357 (479)
|--..|
T Consensus 85 vistip 90 (129)
T 4eyt_A 85 VISTIP 90 (129)
T ss_dssp EECCCC
T ss_pred eeecCC
Confidence 644433
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=79.78 E-value=3.2 Score=40.85 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=44.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK 342 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~ 342 (479)
...++|+ +|..+...+|.++|+.||.| .|+.+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-----t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-----SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-----CeEEEEECCHHHHHHHHHHHHh
Confidence 3566666 88888899999999999954 4444443 3699999999999999998853
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.75 E-value=3.9 Score=40.18 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=43.3
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS 167 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~ 167 (479)
..++|+ +|..+...+|.++|+.||.| .|+.+- ...|||.|.+.+.|..+++.+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 345555 89899999999999999954 454432 23699999999999999998753
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=69.49 E-value=12 Score=25.70 Aligned_cols=59 Identities=8% Similarity=0.173 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHhcCC-----CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 291 NTTTKQLKELFQRHG-----EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 291 ~~~~~~l~~~f~~~G-----~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
.+...+|..++..-+ .|-.|.|.. .|.||+-.. ..|..++..|++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 445566666665443 567888865 468888854 55788888899999999999998764
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=67.26 E-value=29 Score=24.29 Aligned_cols=69 Identities=14% Similarity=0.295 Sum_probs=51.3
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
...|.|-|-|+|..+-..++.-.....|--..|..+ .|.|.|.|.+.++...|+..|-+. +..+|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 457889999999999888887777777755555543 357999999999999999876433 334555544
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.97 E-value=20 Score=24.39 Aligned_cols=59 Identities=10% Similarity=0.232 Sum_probs=38.4
Q ss_pred CCCHHHHHHhhcccC-----ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 114 DASEEDLRDLCEPIG-----EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 114 ~~te~~l~~~f~~~G-----~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
.++..+|..++..-+ .|-.|.|..+ |.||+-.... |..+++.|++..+.|+.++|..+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 367777777665433 4666776432 7888887765 778888899999999999987654
No 407
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=57.19 E-value=2.2 Score=39.88 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=7.5
Q ss_pred CCCHHHHHHHHhc
Q 011718 291 NTTTKQLKELFQR 303 (479)
Q Consensus 291 ~~~~~~l~~~f~~ 303 (479)
.++.++|+++...
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 3566666666544
No 408
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=56.80 E-value=1.3 Score=44.53 Aligned_cols=8 Identities=13% Similarity=0.144 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 011718 155 KEVAKRAI 162 (479)
Q Consensus 155 ~e~a~~Al 162 (479)
++-+.+.+
T Consensus 415 ~~~~~~Fl 422 (649)
T 3tj1_A 415 LELMDSFL 422 (649)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33343333
No 409
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=51.85 E-value=3 Score=45.46 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=14.3
Q ss_pred eEEEEEecCHHHHHHHHHHhc
Q 011718 146 GFAFVAFRSKEVAKRAIDELC 166 (479)
Q Consensus 146 g~afV~F~~~e~a~~Al~~l~ 166 (479)
+.++|.-.+.+-|......+.
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~ 248 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELL 248 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHH
T ss_pred CeEEEEcCcHHHHHHHHHHHH
Confidence 467888888877766665443
No 410
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=51.05 E-value=3.7 Score=44.75 Aligned_cols=9 Identities=11% Similarity=0.098 Sum_probs=4.5
Q ss_pred ceEEEEeCC
Q 011718 321 DFGFIHYAE 329 (479)
Q Consensus 321 g~~fV~f~~ 329 (479)
|++|+.+..
T Consensus 588 G~~ill~~~ 596 (1108)
T 3l9o_A 588 GIVIMMIDE 596 (1108)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEecC
Confidence 455555543
No 411
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.38 E-value=20 Score=29.09 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=35.4
Q ss_pred ceEEecCCCC-C--------CCHHHHHHHH--hcCCCEEEEEccCCCCCCCceEEEEeCChH
Q 011718 281 KALYVKNLPE-N--------TTTKQLKELF--QRHGEVTKVVTPPGKSGKRDFGFIHYAERS 331 (479)
Q Consensus 281 ~~l~v~nl~~-~--------~~~~~l~~~f--~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~ 331 (479)
..+.|-|+|. . .+...|++.| +.|..+. |+......+.+|++.|.|.+.-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCCh
Confidence 4677788876 2 3447899977 8897765 5555555566789999998643
No 412
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.07 E-value=63 Score=22.80 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=39.1
Q ss_pred EEecCCCCCCCHHHHHHHHhc-CC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHh
Q 011718 283 LYVKNLPENTTTKQLKELFQR-HG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 283 l~v~nl~~~~~~~~l~~~f~~-~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 339 (479)
-|+-.+....+..+|++.+++ |+ .|..|....-..+. .-|+|++..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~-KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE-KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC-EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc-eEEEEEcCCCCcHHHHHHh
Confidence 344455668899999999987 66 77777665544332 3599999887777765543
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.33 E-value=63 Score=26.21 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=35.7
Q ss_pred eEEECCCCC-C--------CCHHHHHHhh--cccCceeEEEEeecCCCCCceeEEEEEecCHHH
Q 011718 105 EVFIGGLPK-D--------ASEEDLRDLC--EPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157 (479)
Q Consensus 105 ~l~V~nLp~-~--------~te~~l~~~f--~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~ 157 (479)
.+.|-|+|. . ....+|++.| +.|.++. |+.+.+.. -.+|+|.|.|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChH
Confidence 467888887 2 3457899977 9998764 66666543 467899999987543
No 414
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=38.04 E-value=76 Score=20.83 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=42.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHh
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 339 (479)
.++.|.++....=...|...+.. ..|..+.+.... +.+.|.|.+.+....+|+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~----~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE----AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE----EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC----CEEEEEECCHHHHHHHHHH
Confidence 57889999887778889999998 888888775544 5688888866667777765
No 415
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=35.96 E-value=8.3 Score=37.14 Aligned_cols=15 Identities=13% Similarity=-0.104 Sum_probs=6.5
Q ss_pred EEEEeCC---hHHHHHHH
Q 011718 323 GFIHYAE---RSSALKAI 337 (479)
Q Consensus 323 ~fV~f~~---~~~a~~a~ 337 (479)
+++...+ .+.|.+.|
T Consensus 263 ~~~I~~~s~~~e~A~~fl 280 (449)
T 3iot_A 263 SAGINAASPNKELAKEFL 280 (449)
T ss_dssp EEEEBTTCSCHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 4444433 34444444
No 416
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=27.57 E-value=53 Score=17.47 Aligned_cols=8 Identities=63% Similarity=1.128 Sum_probs=5.3
Q ss_pred CCCCCCCC
Q 011718 472 SGRRYRPY 479 (479)
Q Consensus 472 ~~~r~~~y 479 (479)
..+|=|||
T Consensus 22 ~drr~rpy 29 (29)
T 4fdd_B 22 QDRRERPY 29 (29)
T ss_pred hhcccCCC
Confidence 33578887
No 417
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=26.44 E-value=1.8e+02 Score=21.08 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHH-hcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCC
Q 011718 287 NLPENTTTKQLKELF-QRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 287 nl~~~~~~~~l~~~f-~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
-++..+.-++|.... ..||.-.+++.... -..|-..+.++..+||+.|+.. ..-+.|+|-+..++..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGST 90 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCCC
Confidence 345567777766554 45787777776632 3688889999999999987642 3345566666555533
No 418
>2z5n_B Heterogeneous nuclear ribonucleoprotein D0; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, hnRNP, NLS, NES; 3.20A {Homo sapiens}
Probab=24.85 E-value=49 Score=17.37 Aligned_cols=6 Identities=50% Similarity=1.442 Sum_probs=4.6
Q ss_pred CCCCCC
Q 011718 474 RRYRPY 479 (479)
Q Consensus 474 ~r~~~y 479 (479)
.+|.||
T Consensus 19 ~~y~Py 24 (26)
T 2z5n_B 19 NSYKPY 24 (26)
T ss_pred ccccCC
Confidence 388887
No 419
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.67 E-value=1.2e+02 Score=21.37 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=36.6
Q ss_pred EEecCCCCCCCHHHHHHHHhc-CC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHH
Q 011718 283 LYVKNLPENTTTKQLKELFQR-HG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337 (479)
Q Consensus 283 l~v~nl~~~~~~~~l~~~f~~-~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~ 337 (479)
-|+-.+....+..+|++.+++ |+ .|..|....-..+. .-|+|++..-.+|....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~-KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE-KKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSS-EEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCc-eEEEEEECCCCcHHHHH
Confidence 345555678899999998876 56 77777665544322 35999998776655443
No 420
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.59 E-value=1.1e+02 Score=21.58 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.2
Q ss_pred ceeEEEEeecCCCCCceeEEEEEec
Q 011718 129 EVFEVGLVKDKDSGESKGFAFVAFR 153 (479)
Q Consensus 129 ~i~~v~i~~~~~~g~~~g~afV~F~ 153 (479)
.|+.|+|.+-...++-+++|-|+|.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~d 29 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5788888887667899999999996
No 421
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.34 E-value=67 Score=21.21 Aligned_cols=20 Identities=15% Similarity=0.483 Sum_probs=14.0
Q ss_pred CCEEEEEccCCCCCCCceEEEEeCCh
Q 011718 305 GEVTKVVTPPGKSGKRDFGFIHYAER 330 (479)
Q Consensus 305 G~v~~v~~~~~~~~~~g~~fV~f~~~ 330 (479)
|+|+.|.... ..|||.|.+-
T Consensus 28 GtV~kV~~~~------~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDSAR------EVCLVQFEDD 47 (68)
T ss_dssp EEEEEEETTT------TEEEEEETTT
T ss_pred eEEEEEecCC------cEEEEEEccC
Confidence 5677776433 6799999763
No 422
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=22.17 E-value=1.4e+02 Score=23.45 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=36.5
Q ss_pred EecCCCCCCCHHHHHHHHhc-CC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHH
Q 011718 284 YVKNLPENTTTKQLKELFQR-HG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338 (479)
Q Consensus 284 ~v~nl~~~~~~~~l~~~f~~-~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 338 (479)
|+--+....+..+|++.++. |+ .|..|....-..+. --|||++..-.+|.....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~-KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGN-KKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSC-EEEEEEECSSSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-EEEEEEcCCCCcHHHHHH
Confidence 34444567889999988877 55 67777665544433 359999987766666544
No 423
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.17 E-value=1e+02 Score=31.31 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=42.5
Q ss_pred CCCCCCCCHHHHHHhh----cccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 011718 109 GGLPKDASEEDLRDLC----EPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS 167 (479)
Q Consensus 109 ~nLp~~~te~~l~~~f----~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~ 167 (479)
+..+...+--+|..+| ..+|.|+++.|...+. ...+.+++|.|.+.++|..++..+-.
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i~~ 410 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREIAK 410 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHHHH
Confidence 3445555555788888 2578898888766544 45667899999999999999877643
No 424
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.13 E-value=1.4e+02 Score=23.23 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=36.5
Q ss_pred EecCCCCCCCHHHHHHHHhc-CC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHH
Q 011718 284 YVKNLPENTTTKQLKELFQR-HG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338 (479)
Q Consensus 284 ~v~nl~~~~~~~~l~~~f~~-~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 338 (479)
|+--+....+..+|++.++. |+ .|..|....-..+. .-|||++..-.+|.....
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~-KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGT-KKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSC-EEEEEEECTTCCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-eEEEEEeCCCCcHHHHHH
Confidence 34444567889999988876 56 67777665544433 349999987766665544
No 425
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=20.97 E-value=2.8e+02 Score=21.13 Aligned_cols=50 Identities=8% Similarity=0.157 Sum_probs=32.9
Q ss_pred CHHHHHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCcee
Q 011718 293 TTKQLKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345 (479)
Q Consensus 293 ~~~~l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~ 345 (479)
.-..+...|...| .|..+.... . ..+..+.|.+.+.+.|.++|.. .|+.+
T Consensus 85 vla~i~~~L~~~~InI~~~~~~~-~-~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 85 ALAKVLGFLSAEGVFIEYMYSFA-N-NNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEE-E-TTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEc-c-CCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 4466777777777 665644442 1 1246777899999999998886 55544
No 426
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=20.65 E-value=1.8e+02 Score=18.73 Aligned_cols=56 Identities=9% Similarity=0.079 Sum_probs=40.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeC----ChHHHHHHHHhc
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYA----ERSSALKAIKDT 340 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~----~~~~a~~a~~~~ 340 (479)
.++.|.++....=...|...+.+...|..+.+.... +.+.|.|. +.+....++..+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~----~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ----NRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG----TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC----CEEEEEECCCCCCHHHHHHHHHHC
Confidence 467888888766678899999998888777664443 56889985 455667777653
No 427
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=20.45 E-value=1.4e+02 Score=21.79 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.2
Q ss_pred ceeEEEEeecCCCCCceeEEEEEec
Q 011718 129 EVFEVGLVKDKDSGESKGFAFVAFR 153 (479)
Q Consensus 129 ~i~~v~i~~~~~~g~~~g~afV~F~ 153 (479)
.|+.|+|.+-...++-+++|-|+|.
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~d 29 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLD 29 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5888888887666899999999996
No 428
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=20.21 E-value=1.7e+02 Score=18.41 Aligned_cols=55 Identities=7% Similarity=0.090 Sum_probs=39.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCC---hHHHHHHHHh
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAE---RSSALKAIKD 339 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~---~~~a~~a~~~ 339 (479)
.++.|.++....-...|...+.....|..+.+.... +-+.|.|.. .+....++..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~----~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL----EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT----TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC----CEEEEEECCCCCHHHHHHHHHH
Confidence 468888888776778899999998888877775554 568888843 4455566654
Done!