Query 011720
Match_columns 479
No_of_seqs 339 out of 2401
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 13:58:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.2E-28 4.1E-33 256.0 21.8 364 61-445 57-468 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 2.2E-24 7.4E-29 221.0 25.0 325 56-408 59-403 (451)
3 3o7q_A L-fucose-proton symport 99.9 3.5E-22 1.2E-26 203.9 24.9 314 56-408 58-401 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 2.9E-21 9.9E-26 200.4 25.6 328 56-410 51-444 (491)
5 2gfp_A EMRD, multidrug resista 99.8 6.1E-20 2.1E-24 183.6 12.7 309 56-408 32-346 (375)
6 2xut_A Proton/peptide symporte 99.8 1.9E-17 6.5E-22 173.1 22.8 116 57-175 52-172 (524)
7 2cfq_A Lactose permease; trans 99.7 5.3E-18 1.8E-22 172.6 12.5 314 58-409 42-370 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.7 1.4E-07 4.6E-12 95.7 15.1 142 56-205 285-432 (451)
9 2cfq_A Lactose permease; trans 98.5 3.4E-07 1.2E-11 92.5 11.8 136 65-209 265-402 (417)
10 4gc0_A D-xylose-proton symport 98.5 3.6E-07 1.2E-11 93.9 10.6 146 66-211 319-467 (491)
11 3o7q_A L-fucose-proton symport 98.5 1.3E-06 4.6E-11 88.0 14.1 118 269-409 57-174 (438)
12 2gfp_A EMRD, multidrug resista 98.5 1.8E-06 6.2E-11 85.3 14.3 116 269-410 31-146 (375)
13 4aps_A DI-OR tripeptide H+ sym 98.4 1E-06 3.4E-11 90.6 9.8 137 66-208 326-473 (491)
14 2xut_A Proton/peptide symporte 97.7 0.0001 3.5E-09 76.2 10.7 115 270-409 51-169 (524)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=1.2e-28 Score=255.98 Aligned_cols=364 Identities=12% Similarity=0.046 Sum_probs=222.6
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh---------------hccCchhhHHHHHHHH
Q 011720 61 ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY---------------NHHHDQTFAVVAGAVL 125 (479)
Q Consensus 61 ~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~---------------~~~~~~~~li~~R~i~ 125 (479)
.+...+..+.+..+|++++|+++||+|||++++++.+++.+........ ..++|.++++++|+++
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~ 136 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG 136 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence 3455667788889999999999999999999999999988844333210 0257899999999999
Q ss_pred hhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCc--ccccchhHHHHHHHHHHHHHHH
Q 011720 126 GIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDA--ESVNDKTYIAFMCFMSAGAALS 203 (479)
Q Consensus 126 G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~--~~~~~~~~~i~~~l~~l~~~l~ 203 (479)
|+|.|...+..+.+++|++|+++||+..++++.....|.++++++++......... ..+.|+.......+..+..++.
T Consensus 137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
T 4gc0_A 137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML 216 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999887664322110 1122333222222222222334
Q ss_pred HhccCCccc--c---cCCCCcccccc-------cC---CHHHHH----HH--HHHHhhchHHHHHHHHHHHhhhh----h
Q 011720 204 LAILPPSRV--I---RDDGTRCTNIK-------YS---KVSTEA----IE--ILKLFRNWKMLLLFPAAWASNFF----Y 258 (479)
Q Consensus 204 ~~~~~~~~~--~---r~d~~~~~~~~-------~~---~~~~~~----~~--~~~~~~~~r~ll~~~~~~~~~~~----~ 258 (479)
.++.||++. . |.|+.+....+ ++ ..+++. +. ......+++.++.....+++++. .
T Consensus 217 ~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (491)
T 4gc0_A 217 LYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVV 296 (491)
T ss_dssp GGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHH
T ss_pred hhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHH
Confidence 456677652 1 11111100000 00 000000 00 01112334444444433333331 0
Q ss_pred hccccccc-cccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCC
Q 011720 259 SYQFNNVN-GLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDD 337 (479)
Q Consensus 259 s~~~~~~~-~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (479)
.++.+.+. ....+.......+...++..+++.++.+++.|| +|||+..+.+...+.+....+ . ... ..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr--~Grr~~~~~~~~~~~~~~~~l-~--~~~---~~--- 365 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK--FGRKPLQIIGALGMAIGMFSL-G--TAF---YT--- 365 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCSHHHHHHHHHHHHHHHHHH-H--HHH---HT---
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh--hcCcchhccchHHHHHHHHHH-H--HHH---hc---
Confidence 11101111 112233344556677888999999999999999 789998777665543222111 1 111 11
Q ss_pred CCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCcc-hhH
Q 011720 338 PPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVS-LLS 416 (479)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~ 416 (479)
.. ........+.++...+..++.+..|.+.+|++ |.+.|+++.++...++++++.+...+.|.... ...
T Consensus 366 -------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~f-Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~ 435 (491)
T 4gc0_A 366 -------QA--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF-PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL 435 (491)
T ss_dssp -------TC--CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSS-CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred -------cc--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 23344455555666667778888889999999 89999999999999999999888776653211 111
Q ss_pred --HHHHH--HHHHHhhhhhhheeeeeEeccCCC
Q 011720 417 --QLIIN--WSLTTVSYPLLVVLVMLAVKDDDK 445 (479)
Q Consensus 417 --~~~i~--~~~~~~~~~~~~~~v~~~~pet~~ 445 (479)
.+... +.++....++..+++++++|||.+
T Consensus 436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 11111 112222334566677899999953
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.93 E-value=2.2e-24 Score=220.95 Aligned_cols=325 Identities=14% Similarity=0.055 Sum_probs=209.2
Q ss_pred CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhc-cCchhhHHHHHHHHhhhhhhhhh
Q 011720 56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNH-HHDQTFAVVAGAVLGIGAGLLWA 134 (479)
Q Consensus 56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~-~~~~~~li~~R~i~G~g~g~~~~ 134 (479)
.++...+...++...+..++++++|+++||+|||+.+.++.+++.+.......... ++|++.++++|++.|++.+...+
T Consensus 59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~ 138 (451)
T 1pw4_A 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP 138 (451)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHH
T ss_pred ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccc
Confidence 44555667778888889999999999999999999999999988774333222000 57899999999999999999999
Q ss_pred hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCccc-ccchhHHHHHHHHHHHHHHHHhccCCcccc
Q 011720 135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAES-VNDKTYIAFMCFMSAGAALSLAILPPSRVI 213 (479)
Q Consensus 135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~-~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~ 213 (479)
+..+++.|+.|+++|++.++++.....+|.++|+.++..+... .+ |++. +++..++.++..++..++.||++..
T Consensus 139 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----~g~w~~~-f~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 139 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW----FNDWHAA-LYMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH----TCCSTTC-THHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccHHHH-HHHHHHHHHHHHHHHHhhccCCHhh
Confidence 9999999999999999999999999999999999998764322 12 3333 3343444444444444445543321
Q ss_pred cC----CCCccccc-c---cCCHHHHHHH--HHHHhhchHHHHHHHHHHHhhhhh---hcccccccc--ccccchhhhHH
Q 011720 214 RD----DGTRCTNI-K---YSKVSTEAIE--ILKLFRNWKMLLLFPAAWASNFFY---SYQFNNVNG--LMFNLRTRGLN 278 (479)
Q Consensus 214 r~----d~~~~~~~-~---~~~~~~~~~~--~~~~~~~~r~ll~~~~~~~~~~~~---s~~~~~~~~--~~f~~~~~~l~ 278 (479)
++ ++.+.+.+ + ++..+...++ ..+.+++|+++......+...+.+ ...++.+.. .+++..+.++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 293 (451)
T 1pw4_A 214 CGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWA 293 (451)
T ss_dssp TCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHH
T ss_pred cCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 11 10000000 0 0000000111 123345666655544433332211 111133332 23455567788
Q ss_pred HHHHHHHHHHHHHHhhhhcccccc--CccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHH
Q 011720 279 NVFYWGAQMLGSVGIGYVMDFSFQ--SLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFV 356 (479)
Q Consensus 279 ~~~~~i~~~i~~~~~g~l~Dr~~~--gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (479)
....+++.+++.++.+++.|| + |||+....+......+...+ + . +. .+ .+......
T Consensus 294 ~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~----~---~-~~----------~~--~~~~~~~~ 351 (451)
T 1pw4_A 294 YFLYEYAGIPGTLLCGWMSDK--VFRGNRGATGVFFMTLVTIATIV----Y---W-MN----------PA--GNPTVDMI 351 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TSTTCHHHHHHHHHHHHHHHHHH----T---T-SC----------CT--TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhcCCchhHHHHHHHHHHHHHHH----H---H-Hh----------cc--cCHHHHHH
Confidence 888899999999999999999 5 78776554433221111111 1 0 11 01 12334455
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHH-HHHHHhhhc
Q 011720 357 LYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSA-GAAVAWQVD 408 (479)
Q Consensus 357 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~ 408 (479)
..++.|++....++..+.+..+.. |+++|+++.++++...++ |.+++..+.
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGLHALELA-PKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTS-CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHh-chhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777778889999 788899999999999999 888887654
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.90 E-value=3.5e-22 Score=203.85 Aligned_cols=314 Identities=12% Similarity=0.035 Sum_probs=197.8
Q ss_pred CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720 56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG 135 (479)
Q Consensus 56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~ 135 (479)
.++...+...+....+..++.++.|+++||+|||+.+.++.+++.+..........+++++.++++|++.|++.|...++
T Consensus 58 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 137 (438)
T 3o7q_A 58 LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA 137 (438)
T ss_dssp CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhh
Confidence 34556677778888889999999999999999999999999988874433321124688999999999999999999999
Q ss_pred hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCccc----------------cc------chh-HHHH
Q 011720 136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAES----------------VN------DKT-YIAF 192 (479)
Q Consensus 136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~----------------~~------~~~-~~i~ 192 (479)
..+++.|+.|+++|++.++++.....+|.++|+.+...+..... +. ++ |+. +.+.
T Consensus 138 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 215 (438)
T 3o7q_A 138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII 215 (438)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999998877652211 11 00 432 2222
Q ss_pred HHHHHHHHHHHHhccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh----hhhcccccc-cc
Q 011720 193 MCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF----FYSYQFNNV-NG 267 (479)
Q Consensus 193 ~~l~~l~~~l~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~----~~s~~~~~~-~~ 267 (479)
..+..+..++.++.+.|+..++++++ +++++.++. ..+.+++|+++......+.... ...+. +.+ ..
T Consensus 216 ~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 287 (438)
T 3o7q_A 216 VAIVLLVALLIMLTKFPALQSDNHSD----AKQGSFSAS---LSRLARIRHWRWAVLAQFCYVGAQTACWSYL-IRYAVE 287 (438)
T ss_dssp HHHHHHHHHHHHHCCCCCCTTTCCCC----SSTTSHHHH---HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccccccc----ccccchhhh---HHHHHhChHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence 33333322333333323222111111 111222222 3345566666554433222211 11222 444 32
Q ss_pred --ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCccccc
Q 011720 268 --LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFK 345 (479)
Q Consensus 268 --~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (479)
.+++..+.++......++.+++.++.+++.|| +|||+....+..... +...+ ... .
T Consensus 288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~~~~~~~~~~-~~~~~----~~~----~----------- 345 (438)
T 3o7q_A 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR--FAPHKVLAAYALIAM-ALCLI----SAF----A----------- 345 (438)
T ss_dssp HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHH-HHHHH----HHH----C-----------
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHH-HHHHH----HHH----c-----------
Confidence 24456667777778899999999999999999 678886655543321 11111 110 1
Q ss_pred CCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720 346 TSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD 408 (479)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 408 (479)
+... .....++.+++.+...+..+.+..+.+ ++ +++++.++.. ...++.+++..+.
T Consensus 346 ---~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~g~~~~~~~~ 401 (438)
T 3o7q_A 346 ---GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNL-GQ-DTKYGSSFIV-MTIIGGGIVTPVM 401 (438)
T ss_dssp ---CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSC-GG-GHHHHHHHHH-HTTHHHHHHHHHH
T ss_pred ---CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhc-cc-cccchhhHHH-HHHHHHHHHHHHH
Confidence 1111 223335666777777777777777877 33 3677776655 4556666654443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.88 E-value=2.9e-21 Score=200.41 Aligned_cols=328 Identities=13% Similarity=-0.021 Sum_probs=195.9
Q ss_pred CChhhhhhHHHHHHHHHHHhhhhhhhhhhc-cchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhh
Q 011720 56 LDPTAANNANTALYTTFSVFGILGGGVYNI-FGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWA 134 (479)
Q Consensus 56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~-~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~ 134 (479)
.++...+...++...+..++++++|+++|| +|||+++.++.+++.+. ..+.. .++|.+.++++|++.|+|.+...+
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 51 ITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLG--HIVLA-LPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH--HHHHH-SCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH--HHHHH-HhhhHHHHHHHHHHHHHHHHhccc
Confidence 456667777888888899999999999999 89999999999988763 33332 468899999999999999999999
Q ss_pred hhhhhhhcCCCccc--hHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcc
Q 011720 135 GQGAIMTSYPTATR--KGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSR 211 (479)
Q Consensus 135 ~~~~~i~e~~~~~~--RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~ 211 (479)
...++++|+.|+++ |++.++++....++|..+|+.+...+..+ .+|+ .+.+..+..+++.++.++..|+..
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA------AGYHVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 99999999999988 77888889999999999999998766432 3343 233333333333333333322111
Q ss_pred cccCCCCcccccccCCHHHHH------------------------------------------------HHHHHH-hhch
Q 011720 212 VIRDDGTRCTNIKYSKVSTEA------------------------------------------------IEILKL-FRNW 242 (479)
Q Consensus 212 ~~r~d~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~-~~~~ 242 (479)
.++.+..+.+. +++..++.. ++.... ..++
T Consensus 202 ~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (491)
T 4aps_A 202 DPHYLRPTDPL-APEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHL 280 (491)
T ss_dssp CSCCSCCSCCC-SHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccccCCCCcc-ccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 11000000000 000000000 000000 0111
Q ss_pred H---HHHHHHHHHHhhhhhhcc---ccccccc--cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceee-----
Q 011720 243 K---MLLLFPAAWASNFFYSYQ---FNNVNGL--MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGL----- 309 (479)
Q Consensus 243 r---~ll~~~~~~~~~~~~s~~---~~~~~~~--~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~----- 309 (479)
+ .+.+..........+... ++.+... ..+....++.....+++.+++.++.+++.|| +|||+...
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r--~~~r~~~~~~~~~ 358 (491)
T 4aps_A 281 RVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA--WKKNQPSSPTKFA 358 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH--TTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH--HhccCCCchHHHH
Confidence 1 111111111111111111 1112211 1222345666667788888889999999999 67886544
Q ss_pred ehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHH
Q 011720 310 VGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRY 389 (479)
Q Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~ 389 (479)
.+...+. +.+.+ +........+ + .+ .+.......+++.+++.+...+..+.+..+.. |+++|+++
T Consensus 359 ~~~~~~~-~~~~~----~~~~~~~~~~------~-~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-p~~~~g~~ 423 (491)
T 4aps_A 359 VGLMFAG-LSFLL----MAIPGALYGT------S-GK--VSPLWLVGSWALVILGEMLISPVGLSVTTKLA-PKAFNSQM 423 (491)
T ss_dssp HHHHHHH-HHHTT----THHHHHHCCC------C-TT--CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT-TTTCSSSS
T ss_pred HHHHHHH-HHHHH----HHHHHHhcCC------C-CC--ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC-CHHHHHHH
Confidence 2322211 11111 1010001100 0 11 23445566677888888888888888999999 78889999
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 011720 390 TGFYKGVQSAGAAVAWQVDTH 410 (479)
Q Consensus 390 ~~~~~~~~~~g~~i~~~~~~~ 410 (479)
.++++...++|.+++..+.+.
T Consensus 424 ~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 424 MSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp THHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.81 E-value=6.1e-20 Score=183.64 Aligned_cols=309 Identities=15% Similarity=0.063 Sum_probs=194.1
Q ss_pred CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720 56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG 135 (479)
Q Consensus 56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~ 135 (479)
.++...+...+.......+++++.|+++||+|||+.+.++.++..+...... .+++.+.++++|++.|++.+...+.
T Consensus 32 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~l~g~~~~~~~~~ 108 (375)
T 2gfp_A 32 VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV---TTSSLTVLIAASAMQGMGTGVGGVM 108 (375)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHhhhhh
Confidence 3455667778888888999999999999999999999999988777333322 2468899999999999999999999
Q ss_pred hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCccccc
Q 011720 136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRVIR 214 (479)
Q Consensus 136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~~r 214 (479)
...++.|+.|+++|++.++++.....+|..+|+.++..+.. ..+|+. +.+..++..+..++..+..||++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 109 ARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp HHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 99999999999999999999999999999999999876532 134542 32222323332222233344443221
Q ss_pred CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhh---hhcccccccc--ccccchhhhHHHHHHHHHHHHH
Q 011720 215 DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFF---YSYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLG 289 (479)
Q Consensus 215 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~---~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~ 289 (479)
++++ +.+++. + +.+++|+++......+..... .....+.+.. .+++..+.++.....+++.+++
T Consensus 183 ~~~~----~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 251 (375)
T 2gfp_A 183 APRT----RLLTSY----K---TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFG 251 (375)
T ss_dssp CCCC----CTTTCS----T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccc----cHHHHH----H---HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 1110 111111 1 223345544433332222211 1111233332 2234445677777788999999
Q ss_pred HHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHH
Q 011720 290 SVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQ 369 (479)
Q Consensus 290 ~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 369 (479)
.++.+++.|| .+|| ...+...+......... ... ..+ .+.+......++.+++.+..+
T Consensus 252 ~~~~~~l~~r--~~~~--~~~~~~~~~~~~~~~~~--~~~--------------~~~--~~~~~~~~~~~l~g~~~~~~~ 309 (375)
T 2gfp_A 252 AWFAGRPNKR--FSTL--MWQSVICCLLAGLLMWI--PDW--------------FGV--MNVWTLLVPAALFFFGAGMLF 309 (375)
T ss_dssp HHHHHTTTTH--HHHH--HHHHHHHHHHTSSSSSH--HHH--------------HHH--HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHH--Hhh--------------hcc--ccHHHHHHHHHHHHHHHHHhh
Confidence 9999999998 3442 22222110000000000 000 001 122334455566777777778
Q ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720 370 SMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD 408 (479)
Q Consensus 370 ~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 408 (479)
+..+.+..+.. | ++|+++.++.+..+++|..++-.+.
T Consensus 310 ~~~~~~~~~~~-p-~~~g~~~g~~~~~~~~g~~~~~~~~ 346 (375)
T 2gfp_A 310 PLATSGAMEPF-P-FLAGTAGALVGGLQNIGSGVLASLS 346 (375)
T ss_dssp STTHHHHHTHH-H-HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred HHHHHHHHHhC-C-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 87788888888 5 8899999999988888877765544
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.77 E-value=1.9e-17 Score=173.09 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=97.1
Q ss_pred ChhhhhhHHHHHHHHHHHhhhhhhhhhhcc-chhHHHhhhhHHHHHHHHHHHhhhccC-chhhHHHHHHHHhhhhhhhhh
Q 011720 57 DPTAANNANTALYTTFSVFGILGGGVYNIF-GPRVTLAAGCSTYVLYAGSFLYYNHHH-DQTFAVVAGAVLGIGAGLLWA 134 (479)
Q Consensus 57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~-Grk~~l~ig~~~~~i~~~~~~~~~~~~-~~~~li~~R~i~G~g~g~~~~ 134 (479)
++...+...++...+..++++++|+++||+ |||+++.++.+++.+.. .+.. .++ +.+.++++|++.|++.+...+
T Consensus 52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (524)
T 2xut_A 52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH--AFLA-IFEHSVQGFYTGLFLIALGSGGIKP 128 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH--HHHH-HTSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH--HHHH-HhcccHHHHHHHHHHHHHhccccch
Confidence 344566667788888889999999999999 99999999998877633 2222 356 899999999999999999999
Q ss_pred hhhhhhhcCCCccchHhHHHH---HHHHHHhhhhhhhHHHhhhh
Q 011720 135 GQGAIMTSYPTATRKGTYISL---FWSIFNMGGVVGGLIPFIMN 175 (479)
Q Consensus 135 ~~~~~i~e~~~~~~RG~~~g~---~~~~~~~G~~iG~~i~~~i~ 175 (479)
...+++.|+.|+++|++..+. +....++|..+|+.+...+.
T Consensus 129 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 129 LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999877666 88888999999998877664
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.74 E-value=5.3e-18 Score=172.59 Aligned_cols=314 Identities=13% Similarity=-0.006 Sum_probs=167.5
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCch-hhHHHHHHHHhhhhhhhhhhh
Q 011720 58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQ-TFAVVAGAVLGIGAGLLWAGQ 136 (479)
Q Consensus 58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~-~~li~~R~i~G~g~g~~~~~~ 136 (479)
+...+...+....+..+++++.|+++||+|||+.++++..++.+..........++.. ..++.+|++.|++.|..+++.
T Consensus 42 ~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 121 (417)
T 2cfq_A 42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121 (417)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445667778888889999999999999999999999887665422222111111111 124567778777776655544
Q ss_pred hhhhhcCCCc--cchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccc
Q 011720 137 GAIMTSYPTA--TRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVI 213 (479)
Q Consensus 137 ~~~i~e~~~~--~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~ 213 (479)
.....++.++ ++|++..+.......+|..+|+.+...+.. .+|+ .+++..+..++ .++..++.+|++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-------~~~~~~f~~~~~~~~~-~~~~~~~~~~~~~~ 193 (417)
T 2cfq_A 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-------INNQFVFWLGSGCALI-LAVLLFFAKTDAPS 193 (417)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-------HCSHHHHTTTTTTTTT-HHHHSCSSCCCCSC
T ss_pred HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-------hchhHHHHHHHHHHHH-HHHHHHHcCccccc
Confidence 4444444433 456766777766677888888877765532 1232 22221111112 22222333433211
Q ss_pred c--CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhh-hc--ccccccccccc-----chhhhHHHHHHH
Q 011720 214 R--DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFY-SY--QFNNVNGLMFN-----LRTRGLNNVFYW 283 (479)
Q Consensus 214 r--~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~-s~--~~~~~~~~~f~-----~~~~~l~~~~~~ 283 (479)
+ +++.+.+..++.+ .++..+.+++|+++......+.....+ .+ .++.+....++ ....++......
T Consensus 194 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 269 (417)
T 2cfq_A 194 SATVANAVGANHSAFS----LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGE 269 (417)
T ss_dssp SSCSSSSSSSCCCCCC----HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHH
T ss_pred cccccccccccccccc----HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Confidence 1 1110000011111 223334556676544333222111111 00 01222211121 222345555667
Q ss_pred HHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHh
Q 011720 284 GAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGL 363 (479)
Q Consensus 284 i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (479)
++.+++.++.+++.|| +|||+....+..... +.... +. + . .+........++.++
T Consensus 270 ~~~~~~~~~~g~l~dr--~g~~~~l~~~~~~~~-~~~~~----~~----~-----------~---~~~~~~~~~~~l~~~ 324 (417)
T 2cfq_A 270 LLNASIMFFAPLIINR--IGGKNALLLAGTIMS-VRIIG----SS----F-----------A---TSALEVVILKTLHMF 324 (417)
T ss_dssp HHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHH-HHHHH----HT----T-----------C---CSHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHH--hcHHHHHHHHHHHHH-HHHHH----HH----H-----------h---ccHHHHHHHHHHHHH
Confidence 7888899999999999 688886554433221 11111 10 0 0 111222333344555
Q ss_pred hHHHHHHHHHHHHHHhcCCchhhhHHHHH-HHHHHHHHHHHHhhhcc
Q 011720 364 LDAMFQSMVYWVIGALADDSETLSRYTGF-YKGVQSAGAAVAWQVDT 409 (479)
Q Consensus 364 ~~~~~~~~~~~~~~~i~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~ 409 (479)
.....++..+.+++|.+ |++.|+++.++ ++..+++|..++..+..
T Consensus 325 ~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~lg~~~gp~l~G 370 (417)
T 2cfq_A 325 EVPFLLVGCFKYITSQF-EVRFSATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence 55566666677889999 88899998888 47777888877766554
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.72 E-value=1.4e-07 Score=95.71 Aligned_cols=142 Identities=13% Similarity=-0.049 Sum_probs=102.6
Q ss_pred CChhhhhhHHHHHHHHHHHhhhhhhhhhhcc--chhHHHhhhhHHHHHHHHHHHhhhcc--CchhhHHHHHHHHhhhhhh
Q 011720 56 LDPTAANNANTALYTTFSVFGILGGGVYNIF--GPRVTLAAGCSTYVLYAGSFLYYNHH--HDQTFAVVAGAVLGIGAGL 131 (479)
Q Consensus 56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~--Grk~~l~ig~~~~~i~~~~~~~~~~~--~~~~~li~~R~i~G~g~g~ 131 (479)
.++...+...+....+..++.++.+++.||+ |||+.+.++.++... .+.+..... .+.+.+++.-++.|++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT--IATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH--HHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH--HHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 3455555566666777788889999999999 999999888776552 122211112 3677788888999999888
Q ss_pred hhhhhhhhhhcCCCccchHhHHHHHHHHHHh-hhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHh
Q 011720 132 LWAGQGAIMTSYPTATRKGTYISLFWSIFNM-GGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLA 205 (479)
Q Consensus 132 ~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~-G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~ 205 (479)
.++....++.|..|+++||+.+|++.....+ |..+|+.+...+..+ .++. .+.+..++.+++.++.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF------FGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999 999999887766432 2232 344444444554444443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.54 E-value=3.4e-07 Score=92.48 Aligned_cols=136 Identities=11% Similarity=-0.012 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 011720 65 NTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYP 144 (479)
Q Consensus 65 ~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~ 144 (479)
.++......++.++.++++||+|||+.+.++.++..+. .+.....++.+.+++..++.|++.+...+....++.|..
T Consensus 265 ~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR---IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH---HHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33444455677889999999999999998887766542 222223456777888888888888776666778999999
Q ss_pred CccchHhHHHH-HHHHHHhhhhhhhHHHhhhhhccCCcccccc-hhHHHHHHHHHHHHHHHHhccCC
Q 011720 145 TATRKGTYISL-FWSIFNMGGVVGGLIPFIMNYHRTDAESVND-KTYIAFMCFMSAGAALSLAILPP 209 (479)
Q Consensus 145 ~~~~RG~~~g~-~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~-~~~~i~~~l~~l~~~l~~~~~~~ 209 (479)
|++.||+..++ +.....+|..+|+.+...+..+ .++ ..|.+..++.+++.++.+++.|+
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~------~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES------IGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH------SHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh------cCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999998 5777788999999887755321 222 23444455555555544444443
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.50 E-value=3.6e-07 Score=93.93 Aligned_cols=146 Identities=9% Similarity=-0.002 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhc-cCchhhHHHHHHHHhhhhhhh-hhhhhhhhhcC
Q 011720 66 TALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNH-HHDQTFAVVAGAVLGIGAGLL-WAGQGAIMTSY 143 (479)
Q Consensus 66 ~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~-~~~~~~li~~R~i~G~g~g~~-~~~~~~~i~e~ 143 (479)
........++.++++.+.||+|||+.++.+.....+.......... ..+.+..++.-++...+.+.. .+....+.+|.
T Consensus 319 ~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 398 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEI 398 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3444555667789999999999999999887766553332221111 112222222222222222222 23455788999
Q ss_pred CCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCccccc-chhHHHHHHHHHHHHHHHHhccCCcc
Q 011720 144 PTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVN-DKTYIAFMCFMSAGAALSLAILPPSR 211 (479)
Q Consensus 144 ~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~-~~~~~i~~~l~~l~~~l~~~~~~~~~ 211 (479)
.|.+.|++.+|+......+|..+++.+...+........... ...++++.++.+++.++..++.||.|
T Consensus 399 fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 399 FPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 999999999999998888888887766443321100000111 22456667777777766667778765
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.48 E-value=1.3e-06 Score=88.03 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=90.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720 269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG 348 (479)
Q Consensus 269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (479)
+.+..+.++....+.++..++.++.|++.|| +|||+..+.+.....+.....+. .. ..
T Consensus 57 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr--~g~r~~l~~~~~~~~~~~~~~~~--~~----------------~~-- 114 (438)
T 3o7q_A 57 TLTNFQAGLIQSAFYFGYFIIPIPAGILMKK--LSYKAGIITGLFLYALGAALFWP--AA----------------EI-- 114 (438)
T ss_dssp CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHH--HH----------------HT--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH--hcchHHHHHHHHHHHHHHHHHHh--cc----------------cc--
Confidence 3455677888888999999999999999999 78999877765543222111110 00 01
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720 349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT 409 (479)
Q Consensus 349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 409 (479)
++++...+..++.|++.+...+....++++.+ ++++|+++.++.+...++|..++..+..
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLG-PESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc-CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778899999999988889999999 7899999999999999999999987664
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.46 E-value=1.8e-06 Score=85.32 Aligned_cols=116 Identities=13% Similarity=-0.038 Sum_probs=86.8
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720 269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG 348 (479)
Q Consensus 269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (479)
+.+..+.++....+.++..++.++.|++.|| +|||+....+.....+.. ... .. .
T Consensus 31 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~-~~~----~~----------------~-- 85 (375)
T 2gfp_A 31 NVREGAVQSVMGAYLLTYGVSQLFYGPISDR--VGRRPVILVGMSIFMLAT-LVA----VT----------------T-- 85 (375)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT--SCCCCCCHHHHHHHHHHH-HHH----HH----------------H--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHH-HHH----HH----------------h--
Confidence 3455567888888999999999999999999 789988776654432111 111 00 0
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 011720 349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTH 410 (479)
Q Consensus 349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 410 (479)
+++.......++.|++.+...+....++.|.+ |+++|+++.++.+...++|..++..+...
T Consensus 86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 146 (375)
T 2gfp_A 86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLY-ERTQLRHANSLLNMGILVSPLLAPLIGGL 146 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 22344566677889999888888888999999 67889999999999999999888777653
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.36 E-value=1e-06 Score=90.58 Aligned_cols=137 Identities=9% Similarity=-0.023 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhhhhhhhhhccchhHHHh-----hhhHHHHHHHHHHHhh------hccCchhhHHHHHHHHhhhhhhhhh
Q 011720 66 TALYTTFSVFGILGGGVYNIFGPRVTLA-----AGCSTYVLYAGSFLYY------NHHHDQTFAVVAGAVLGIGAGLLWA 134 (479)
Q Consensus 66 ~~~~~~~aig~l~~g~l~d~~Grk~~l~-----ig~~~~~i~~~~~~~~------~~~~~~~~li~~R~i~G~g~g~~~~ 134 (479)
+.......++.++.+++.||+|||+... ++.++..+........ ....+.+.+++.-++.|++.+...+
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 405 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP 405 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH
Confidence 3444555666788899999999986654 5554443311111111 0013567788889999999999888
Q ss_pred hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccC
Q 011720 135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILP 208 (479)
Q Consensus 135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~ 208 (479)
....++.|..|+++||+.+|++.....+|..+|+.+...+... +. +..|.+...+.++..++.+++.+
T Consensus 406 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 406 VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----SE-VAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----ST-THHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999887655321 12 23444444444444444444443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.74 E-value=0.0001 Score=76.15 Aligned_cols=115 Identities=15% Similarity=-0.030 Sum_probs=80.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhhhhcccccc-CccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720 270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQ-SLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG 348 (479)
Q Consensus 270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~-gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (479)
++..+.++....+.++..++.++.|++.|| + |||+....+.....+ ...+ ..+ . .
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr--~~g~r~~~~~~~~~~~~-~~~~----~~~----~----------~--- 106 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADR--FFGKYNTILWLSLIYCV-GHAF----LAI----F----------E--- 106 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTT--SSCSHHHHHHHHHHHHH-HHHH----HHH----T----------S---
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHH-HHHH----HHH----h----------c---
Confidence 455667888888899999999999999999 6 899876655433221 1111 100 0 0
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHH---HHHHHHHHHHHHhhhcc
Q 011720 349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGF---YKGVQSAGAAVAWQVDT 409 (479)
Q Consensus 349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~---~~~~~~~g~~i~~~~~~ 409 (479)
.+....++..++.|++.+...+....++++.+ |+++|+++.+. +....++|.+++..+..
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQF-DQSNKSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTC-STTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred ccHHHHHHHHHHHHHhccccchhHHHHHHHHc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13444556667788888888888888999999 67778665555 77777888877766553
Done!