BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011721
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IJ3|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Cytosol
Aminopeptidase From Coxiella Burnetii
Length = 482
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 295 VTSTKTEARAVLKKAYA----------LPAGVITNSASPITQPRRPSWTFDNKDQRNQQG 344
+T+T E R VL A A + +T +A P P+ F N+D Q
Sbjct: 328 ITNTDAEGRVVLADALAEAVKEDPDLIIDFSTLTGAARIALGPNLPA-LFANQDSLAQAL 386
Query: 345 KDDA--TDSPHWKLPIKQ 360
D + TD P W+LP+ Q
Sbjct: 387 IDASLKTDDPLWRLPLFQ 404
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD 181
NL AY +Q DY+ A YY KAL L+ +
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPN 41
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD 181
NL AY +Q DY+ A YY KAL L+ +
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPN 75
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD 181
NL AY +Q DY+ A YY KAL L+ +
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELDPN 109
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD 181
NL AY +Q DY+ A YY KAL L+ +
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPN 41
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD 181
NL AY +Q DY+ A YY KAL L+ +
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPN 75
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSL 178
NL AY +Q DY+ A YY KAL L
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALEL 38
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSL 178
NL AY +Q DY+ A YY KAL L
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALEL 72
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSL 178
NL AY +Q DY+ A YY KAL L
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALEL 106
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDK---------NKQCNLAICLIRLNRIAEAKSL 204
NLA Q YE E YY +AL + K + NLA C ++ + +A++L
Sbjct: 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETL 217
Query: 205 LQAV--RASSR 213
+ + RA R
Sbjct: 218 YKEILTRAHER 228
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK 184
NL AY +Q DY+ A YY KAL L+ + K
Sbjct: 48 NLGNAYYKQGDYQKAIEYYQKALELDPNNAK 78
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLE 179
NL AY +Q DY+ A YY KAL L+
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKALELD 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,489,806
Number of Sequences: 62578
Number of extensions: 450571
Number of successful extensions: 1067
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 25
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)