Query 011721
Match_columns 479
No_of_seqs 344 out of 1874
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 5.8E-22 1.3E-26 210.8 17.1 253 9-266 242-508 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 5.6E-22 1.2E-26 210.9 16.3 243 24-275 223-479 (966)
3 TIGR00990 3a0801s09 mitochondr 99.8 9.5E-18 2.1E-22 184.3 26.9 201 19-247 331-543 (615)
4 PRK15174 Vi polysaccharide exp 99.8 5.5E-17 1.2E-21 180.3 28.8 114 143-256 278-396 (656)
5 PRK15174 Vi polysaccharide exp 99.8 1.2E-16 2.6E-21 177.6 28.1 236 8-246 65-352 (656)
6 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-16 2.8E-21 175.3 26.7 211 6-244 352-574 (615)
7 TIGR02521 type_IV_pilW type IV 99.8 8.4E-16 1.8E-20 141.7 25.8 171 20-216 32-204 (234)
8 PRK12370 invasion protein regu 99.7 2.3E-16 4.9E-21 172.0 24.4 214 6-247 282-511 (553)
9 PRK11447 cellulose synthase su 99.7 1.4E-15 3E-20 178.6 28.7 190 26-216 276-530 (1157)
10 PRK09782 bacteriophage N4 rece 99.7 1.5E-15 3.3E-20 174.9 28.3 232 8-244 499-743 (987)
11 TIGR02917 PEP_TPR_lipo putativ 99.7 2.8E-15 6E-20 164.5 28.5 229 15-247 631-872 (899)
12 PRK11788 tetratricopeptide rep 99.7 2.6E-15 5.6E-20 153.7 25.9 209 1-214 20-247 (389)
13 PRK11447 cellulose synthase su 99.7 2.3E-15 4.9E-20 176.8 26.9 230 7-238 373-700 (1157)
14 PRK11788 tetratricopeptide rep 99.7 8.4E-15 1.8E-19 149.9 26.8 239 6-247 56-317 (389)
15 PRK09782 bacteriophage N4 rece 99.7 3.5E-15 7.7E-20 172.0 26.3 223 18-247 476-712 (987)
16 TIGR02521 type_IV_pilW type IV 99.7 7.1E-15 1.5E-19 135.5 23.2 175 7-207 53-228 (234)
17 PRK11189 lipoprotein NlpI; Pro 99.7 6.3E-15 1.4E-19 148.7 24.9 202 6-214 47-269 (296)
18 TIGR02917 PEP_TPR_lipo putativ 99.7 1.1E-14 2.3E-19 159.9 28.0 226 10-238 456-698 (899)
19 PRK12370 invasion protein regu 99.7 1.5E-15 3.2E-20 165.6 20.4 185 33-245 275-474 (553)
20 KOG1126 DNA-binding cell divis 99.7 7.6E-16 1.7E-20 166.0 16.7 218 30-250 330-595 (638)
21 KOG1126 DNA-binding cell divis 99.7 8E-16 1.7E-20 165.8 15.6 206 11-244 413-623 (638)
22 COG3063 PilF Tfp pilus assembl 99.6 5.1E-14 1.1E-18 136.6 21.9 164 23-212 39-204 (250)
23 PRK11189 lipoprotein NlpI; Pro 99.6 1.4E-13 3.1E-18 138.9 22.8 179 6-187 85-275 (296)
24 KOG1173 Anaphase-promoting com 99.6 6.7E-14 1.4E-18 149.0 19.9 205 10-216 303-524 (611)
25 KOG1125 TPR repeat-containing 99.6 6.3E-14 1.4E-18 149.5 19.2 196 19-217 286-500 (579)
26 KOG0547 Translocase of outer m 99.6 6.3E-14 1.4E-18 147.2 18.3 209 5-241 346-566 (606)
27 PRK15359 type III secretion sy 99.6 3.9E-14 8.4E-19 128.7 14.7 124 39-193 13-137 (144)
28 PRK10049 pgaA outer membrane p 99.6 3.3E-13 7.2E-18 152.5 25.1 223 9-247 223-465 (765)
29 TIGR03302 OM_YfiO outer membra 99.6 5.1E-13 1.1E-17 128.4 21.0 183 20-211 34-232 (235)
30 KOG0547 Translocase of outer m 99.5 2.4E-13 5.2E-18 142.9 19.5 213 7-243 382-597 (606)
31 KOG1155 Anaphase-promoting com 99.5 3.6E-13 7.8E-18 140.9 20.6 199 29-261 340-553 (559)
32 KOG1125 TPR repeat-containing 99.5 8E-14 1.7E-18 148.7 15.5 181 8-214 308-531 (579)
33 PRK10049 pgaA outer membrane p 99.5 1.2E-12 2.7E-17 147.9 25.2 188 23-230 276-471 (765)
34 PRK15359 type III secretion sy 99.5 2.4E-13 5.2E-18 123.5 15.4 113 73-216 13-127 (144)
35 PRK15179 Vi polysaccharide bio 99.5 7.3E-13 1.6E-17 148.0 22.1 173 36-236 69-243 (694)
36 PRK10370 formate-dependent nit 99.5 3.8E-12 8.3E-17 121.8 21.0 151 27-216 24-179 (198)
37 PF13429 TPR_15: Tetratricopep 99.5 2.1E-13 4.6E-18 135.1 12.6 203 17-247 41-249 (280)
38 KOG0548 Molecular co-chaperone 99.5 4.7E-12 1E-16 134.4 21.6 232 19-254 224-466 (539)
39 PRK10370 formate-dependent nit 99.5 1.9E-12 4.2E-17 123.9 17.0 126 32-185 52-180 (198)
40 TIGR00540 hemY_coli hemY prote 99.5 1.7E-11 3.6E-16 129.0 24.7 66 143-208 327-397 (409)
41 KOG1840 Kinesin light chain [C 99.5 4E-12 8.6E-17 137.1 20.1 180 15-212 195-398 (508)
42 PF13429 TPR_15: Tetratricopep 99.4 1.2E-12 2.6E-17 129.8 14.7 196 10-208 69-275 (280)
43 PLN02789 farnesyltranstransfer 99.4 1.5E-11 3.2E-16 126.3 22.9 161 29-217 47-219 (320)
44 KOG1155 Anaphase-promoting com 99.4 9.8E-12 2.1E-16 130.3 21.7 190 12-240 357-555 (559)
45 TIGR03302 OM_YfiO outer membra 99.4 1.2E-11 2.6E-16 118.9 20.0 166 50-238 30-232 (235)
46 KOG1174 Anaphase-promoting com 99.4 1.8E-11 3.8E-16 126.9 21.7 206 20-239 301-518 (564)
47 TIGR02552 LcrH_SycD type III s 99.4 8E-12 1.7E-16 109.7 15.8 112 41-214 5-118 (135)
48 COG3063 PilF Tfp pilus assembl 99.4 9.3E-12 2E-16 121.0 17.5 157 54-239 36-203 (250)
49 PRK10747 putative protoheme IX 99.4 5.1E-11 1.1E-15 125.1 24.5 68 143-210 322-390 (398)
50 PRK14574 hmsH outer membrane p 99.4 2.5E-11 5.3E-16 138.1 22.2 165 24-216 39-204 (822)
51 PLN02789 farnesyltranstransfer 99.4 6E-11 1.3E-15 121.8 22.7 182 8-217 60-257 (320)
52 PRK15179 Vi polysaccharide bio 99.4 2E-11 4.3E-16 136.6 19.8 152 7-186 74-225 (694)
53 KOG2002 TPR-containing nuclear 99.3 7.4E-11 1.6E-15 132.0 20.9 236 12-247 157-415 (1018)
54 KOG0624 dsRNA-activated protei 99.3 9.7E-11 2.1E-15 119.4 19.4 211 22-245 41-256 (504)
55 PRK14574 hmsH outer membrane p 99.3 7.7E-11 1.7E-15 134.1 20.8 190 40-259 21-214 (822)
56 COG5010 TadD Flp pilus assembl 99.3 1.2E-10 2.7E-15 114.8 18.0 153 35-216 49-203 (257)
57 cd05804 StaR_like StaR_like; a 99.3 3E-10 6.4E-15 115.2 20.5 174 16-214 3-181 (355)
58 KOG1173 Anaphase-promoting com 99.3 2.8E-10 6.1E-15 121.7 20.9 244 10-259 269-533 (611)
59 TIGR00540 hemY_coli hemY prote 99.3 1.1E-09 2.5E-14 115.1 24.6 234 8-244 107-369 (409)
60 PRK15363 pathogenicity island 99.3 2.3E-10 4.9E-15 106.1 16.0 84 149-236 69-154 (157)
61 KOG1840 Kinesin light chain [C 99.2 2.7E-10 5.9E-15 123.1 18.2 176 15-208 279-476 (508)
62 cd05804 StaR_like StaR_like; a 99.2 5.7E-10 1.2E-14 113.1 19.5 174 12-212 33-217 (355)
63 KOG2076 RNA polymerase III tra 99.2 1.4E-09 3.1E-14 121.1 24.0 227 8-236 162-510 (895)
64 KOG0553 TPR repeat-containing 99.2 1.4E-10 3E-15 116.5 14.4 109 98-236 90-200 (304)
65 KOG1129 TPR repeat-containing 99.2 4.5E-10 9.7E-15 114.0 16.5 189 25-217 229-431 (478)
66 KOG1129 TPR repeat-containing 99.2 1.1E-10 2.4E-15 118.4 11.8 202 11-215 249-463 (478)
67 COG5010 TadD Flp pilus assembl 99.2 1.2E-09 2.5E-14 108.0 18.7 166 10-204 58-224 (257)
68 PLN03088 SGT1, suppressor of 99.2 4.3E-10 9.2E-15 116.9 16.3 112 56-195 5-117 (356)
69 PRK10747 putative protoheme IX 99.2 3.1E-09 6.8E-14 111.6 22.7 230 8-245 103-361 (398)
70 KOG2003 TPR repeat-containing 99.2 3.2E-10 7E-15 118.6 14.5 186 27-216 498-695 (840)
71 KOG0553 TPR repeat-containing 99.2 1.1E-10 2.3E-15 117.3 10.5 113 54-199 82-200 (304)
72 KOG2002 TPR-containing nuclear 99.2 3E-09 6.6E-14 119.3 22.5 245 8-256 116-386 (1018)
73 TIGR02552 LcrH_SycD type III s 99.2 1E-09 2.2E-14 96.3 14.7 117 7-185 5-121 (135)
74 KOG0550 Molecular chaperone (D 99.1 6.5E-10 1.4E-14 115.5 14.3 165 27-213 177-353 (486)
75 COG4783 Putative Zn-dependent 99.1 8E-09 1.7E-13 109.3 22.6 152 49-239 302-455 (484)
76 COG2956 Predicted N-acetylgluc 99.1 1.1E-08 2.4E-13 103.9 21.1 205 6-214 56-282 (389)
77 KOG0548 Molecular co-chaperone 99.1 2.4E-09 5.3E-14 114.1 17.3 157 25-217 304-462 (539)
78 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.2E-09 4.8E-14 90.9 13.8 109 54-185 3-112 (119)
79 PF13414 TPR_11: TPR repeat; P 99.1 3.5E-10 7.5E-15 88.8 7.6 65 148-212 2-69 (69)
80 PLN03088 SGT1, suppressor of 99.1 1.7E-09 3.7E-14 112.4 15.1 95 96-216 9-105 (356)
81 KOG1174 Anaphase-promoting com 99.1 1E-08 2.3E-13 106.7 19.6 231 14-247 227-506 (564)
82 PRK02603 photosystem I assembl 99.1 3.1E-09 6.8E-14 98.6 14.4 59 150-208 73-133 (172)
83 KOG0624 dsRNA-activated protei 99.1 1.7E-08 3.8E-13 103.2 20.8 179 12-216 65-258 (504)
84 CHL00033 ycf3 photosystem I as 99.1 3.7E-09 8E-14 97.5 14.6 133 32-183 12-154 (168)
85 PRK02603 photosystem I assembl 99.0 4.6E-09 9.9E-14 97.5 14.7 106 51-182 33-153 (172)
86 KOG2076 RNA polymerase III tra 99.0 3.1E-08 6.8E-13 110.7 23.5 156 27-210 147-309 (895)
87 CHL00033 ycf3 photosystem I as 99.0 3.8E-09 8.3E-14 97.4 13.7 112 69-203 15-134 (168)
88 COG2956 Predicted N-acetylgluc 99.0 6.1E-08 1.3E-12 98.6 22.2 235 6-246 26-283 (389)
89 KOG2003 TPR repeat-containing 99.0 1.3E-08 2.9E-13 106.8 17.4 213 29-244 429-658 (840)
90 cd00189 TPR Tetratricopeptide 99.0 6.3E-09 1.4E-13 80.6 10.9 99 55-181 2-100 (100)
91 KOG3060 Uncharacterized conser 99.0 3.8E-08 8.3E-13 97.2 18.8 166 49-216 48-226 (289)
92 PRK10153 DNA-binding transcrip 99.0 2E-08 4.3E-13 109.4 18.2 132 58-216 344-488 (517)
93 PRK10866 outer membrane biogen 99.0 1.9E-07 4.1E-12 92.4 23.2 179 24-211 37-241 (243)
94 KOG0550 Molecular chaperone (D 98.9 9.6E-09 2.1E-13 106.9 13.4 215 27-242 57-351 (486)
95 cd00189 TPR Tetratricopeptide 98.9 1.2E-08 2.7E-13 78.8 10.9 92 95-212 6-99 (100)
96 KOG4162 Predicted calmodulin-b 98.9 1.1E-07 2.5E-12 104.9 22.0 238 7-247 466-789 (799)
97 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.2E-08 4.8E-13 84.7 12.8 100 94-216 7-111 (119)
98 PRK14720 transcript cleavage f 98.9 4.7E-08 1E-12 111.5 19.0 165 24-217 36-259 (906)
99 PF09976 TPR_21: Tetratricopep 98.9 9.1E-08 2E-12 86.5 17.2 120 65-208 23-145 (145)
100 PF13432 TPR_16: Tetratricopep 98.9 4.9E-09 1.1E-13 81.5 7.5 63 153-215 1-65 (65)
101 PF04733 Coatomer_E: Coatomer 98.9 1.7E-08 3.7E-13 102.4 13.2 69 148-216 200-271 (290)
102 PF09976 TPR_21: Tetratricopep 98.9 9.6E-08 2.1E-12 86.3 16.6 122 28-176 20-145 (145)
103 PF13525 YfiO: Outer membrane 98.9 2.8E-07 6.1E-12 88.3 20.6 174 21-203 7-199 (203)
104 PRK14720 transcript cleavage f 98.9 7.2E-08 1.6E-12 110.1 19.2 152 48-211 26-179 (906)
105 PRK15363 pathogenicity island 98.9 2.8E-08 6E-13 92.3 12.8 91 27-119 43-133 (157)
106 PLN03081 pentatricopeptide (PP 98.9 1.1E-07 2.4E-12 106.5 19.5 183 16-207 357-553 (697)
107 PF12569 NARP1: NMDA receptor- 98.9 6.5E-07 1.4E-11 97.6 24.9 212 25-238 10-291 (517)
108 PF14938 SNAP: Soluble NSF att 98.9 1.6E-07 3.4E-12 94.4 18.7 175 21-216 37-231 (282)
109 COG4783 Putative Zn-dependent 98.8 5E-07 1.1E-11 96.0 22.3 141 27-211 314-455 (484)
110 PRK10153 DNA-binding transcrip 98.8 2E-07 4.4E-12 101.6 20.0 93 164-257 399-498 (517)
111 PRK10803 tol-pal system protei 98.8 8.9E-08 1.9E-12 96.0 15.3 64 151-214 182-250 (263)
112 PF12895 Apc3: Anaphase-promot 98.8 3.6E-08 7.8E-13 80.8 10.2 83 66-175 2-84 (84)
113 KOG1127 TPR repeat-containing 98.8 7.8E-08 1.7E-12 108.4 16.0 178 31-211 470-660 (1238)
114 PF13525 YfiO: Outer membrane 98.8 5.8E-07 1.3E-11 86.1 20.0 142 52-216 4-176 (203)
115 PF12895 Apc3: Anaphase-promot 98.8 1.8E-08 4E-13 82.6 8.1 82 101-207 1-84 (84)
116 PLN03077 Protein ECB2; Provisi 98.8 3.4E-07 7.3E-12 104.9 21.2 174 24-207 529-716 (857)
117 KOG0543 FKBP-type peptidyl-pro 98.8 6.2E-08 1.3E-12 101.0 13.5 110 96-216 215-326 (397)
118 PF13432 TPR_16: Tetratricopep 98.8 2.5E-08 5.4E-13 77.5 8.1 63 95-183 3-65 (65)
119 PF14938 SNAP: Soluble NSF att 98.7 7.3E-07 1.6E-11 89.6 18.4 191 34-259 30-246 (282)
120 PLN03081 pentatricopeptide (PP 98.7 1.7E-06 3.8E-11 96.9 23.1 179 20-209 260-454 (697)
121 COG4235 Cytochrome c biogenesi 98.7 3.5E-07 7.5E-12 92.3 15.6 120 69-216 138-262 (287)
122 PLN03218 maturation of RBCL 1; 98.7 5.5E-06 1.2E-10 97.3 27.8 178 21-203 509-705 (1060)
123 KOG1130 Predicted G-alpha GTPa 98.7 7.5E-08 1.6E-12 100.4 10.9 188 24-211 22-265 (639)
124 COG0457 NrfG FOG: TPR repeat [ 98.7 7.5E-06 1.6E-10 71.2 21.8 167 20-213 60-234 (291)
125 COG0457 NrfG FOG: TPR repeat [ 98.7 2.1E-05 4.5E-10 68.3 24.6 168 21-213 97-268 (291)
126 PRK10866 outer membrane biogen 98.7 3E-06 6.5E-11 83.9 21.5 143 51-216 30-210 (243)
127 PLN03218 maturation of RBCL 1; 98.7 2.1E-06 4.6E-11 100.7 23.6 96 21-117 439-535 (1060)
128 KOG1128 Uncharacterized conser 98.7 3.3E-07 7.2E-12 100.9 15.3 197 24-239 403-617 (777)
129 KOG3060 Uncharacterized conser 98.7 5.9E-06 1.3E-10 82.0 22.4 163 97-262 60-239 (289)
130 PRK15331 chaperone protein Sic 98.7 3.1E-07 6.7E-12 85.9 12.7 84 149-240 71-156 (165)
131 PRK10803 tol-pal system protei 98.7 5.7E-07 1.2E-11 90.2 15.5 110 53-185 142-253 (263)
132 KOG0543 FKBP-type peptidyl-pro 98.7 3.2E-07 6.9E-12 95.7 13.8 131 56-212 211-357 (397)
133 PF13414 TPR_11: TPR repeat; P 98.6 1.1E-07 2.3E-12 74.6 7.7 66 53-120 3-69 (69)
134 COG4235 Cytochrome c biogenesi 98.6 1.2E-06 2.7E-11 88.4 17.2 71 146-216 153-228 (287)
135 KOG0495 HAT repeat protein [RN 98.6 3.6E-06 7.9E-11 92.0 21.3 181 7-216 538-720 (913)
136 KOG1127 TPR repeat-containing 98.6 4.2E-07 9.1E-12 102.6 14.6 185 12-197 485-679 (1238)
137 KOG4162 Predicted calmodulin-b 98.6 4.8E-07 1E-11 100.1 14.3 134 55-216 652-789 (799)
138 COG3071 HemY Uncharacterized e 98.6 1.2E-05 2.6E-10 83.8 23.6 69 142-210 321-390 (400)
139 KOG1156 N-terminal acetyltrans 98.6 3.9E-06 8.5E-11 91.6 20.3 108 11-120 33-140 (700)
140 PLN03077 Protein ECB2; Provisi 98.6 1.3E-05 2.8E-10 92.0 25.6 88 153-244 528-624 (857)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.1E-06 2.4E-11 92.8 15.5 125 58-213 174-299 (395)
142 PF12688 TPR_5: Tetratrico pep 98.6 1.5E-06 3.2E-11 77.5 13.2 92 95-209 7-103 (120)
143 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.5E-07 5.5E-12 98.2 9.7 69 143-211 69-142 (453)
144 PRK11906 transcriptional regul 98.5 2.1E-06 4.6E-11 91.4 16.5 148 34-209 273-435 (458)
145 PF12569 NARP1: NMDA receptor- 98.5 2.9E-05 6.4E-10 84.8 25.5 207 14-246 33-342 (517)
146 KOG0495 HAT repeat protein [RN 98.5 1.7E-05 3.8E-10 86.9 23.2 181 7-216 572-754 (913)
147 KOG1156 N-terminal acetyltrans 98.5 3.4E-06 7.3E-11 92.1 16.0 162 19-208 7-169 (700)
148 PF13424 TPR_12: Tetratricopep 98.4 4.7E-07 1E-11 72.7 6.4 66 146-211 2-76 (78)
149 PF13371 TPR_9: Tetratricopept 98.4 7.7E-07 1.7E-11 70.3 7.1 62 155-216 1-64 (73)
150 PF14559 TPR_19: Tetratricopep 98.4 7.8E-07 1.7E-11 69.3 6.7 57 159-215 1-59 (68)
151 COG4700 Uncharacterized protei 98.4 2.3E-05 5E-10 75.0 17.5 148 33-207 70-219 (251)
152 PRK04841 transcriptional regul 98.4 4E-05 8.7E-10 87.7 23.0 167 24-210 414-602 (903)
153 PF13424 TPR_12: Tetratricopep 98.4 2.3E-06 5E-11 68.7 9.2 66 94-178 10-75 (78)
154 PRK04841 transcriptional regul 98.4 3.3E-05 7.2E-10 88.4 22.2 169 26-212 459-643 (903)
155 PF14559 TPR_19: Tetratricopep 98.4 9.1E-07 2E-11 68.9 6.6 65 100-190 2-67 (68)
156 KOG2376 Signal recognition par 98.4 1.9E-05 4.1E-10 85.7 18.4 185 27-215 20-258 (652)
157 KOG4340 Uncharacterized conser 98.4 5.3E-06 1.1E-10 84.1 13.2 194 14-213 7-214 (459)
158 PF13371 TPR_9: Tetratricopept 98.4 2E-06 4.2E-11 68.0 8.2 65 97-187 3-67 (73)
159 COG1729 Uncharacterized protei 98.3 5.6E-06 1.2E-10 82.8 12.7 64 151-214 180-248 (262)
160 PF12688 TPR_5: Tetratrico pep 98.3 2.5E-05 5.4E-10 69.6 15.6 93 23-117 5-103 (120)
161 COG4700 Uncharacterized protei 98.3 1.8E-05 3.9E-10 75.8 15.0 145 6-178 77-222 (251)
162 KOG2376 Signal recognition par 98.3 2.1E-05 4.5E-10 85.4 17.1 155 23-183 49-258 (652)
163 COG4105 ComL DNA uptake lipopr 98.3 0.0001 2.2E-09 73.4 20.0 184 23-215 38-237 (254)
164 PRK11906 transcriptional regul 98.3 2.2E-05 4.7E-10 83.8 15.8 130 57-214 259-405 (458)
165 KOG1128 Uncharacterized conser 98.3 2.4E-05 5.2E-10 86.6 16.4 201 50-267 395-619 (777)
166 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 4.2E-06 9.2E-11 89.0 10.3 71 48-118 70-141 (453)
167 KOG1130 Predicted G-alpha GTPa 98.2 4.9E-06 1.1E-10 87.2 10.2 156 35-210 171-344 (639)
168 PF06552 TOM20_plant: Plant sp 98.2 1E-05 2.2E-10 76.8 11.0 98 35-184 7-115 (186)
169 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.4E-05 1.2E-09 80.2 17.6 127 16-173 164-292 (395)
170 KOG3785 Uncharacterized conser 98.2 7.5E-05 1.6E-09 77.3 17.1 183 29-217 32-221 (557)
171 KOG4234 TPR repeat-containing 98.2 4.6E-05 9.9E-10 73.7 14.5 100 97-217 103-204 (271)
172 KOG4234 TPR repeat-containing 98.2 1.6E-05 3.4E-10 76.8 11.4 99 155-255 101-209 (271)
173 PF13512 TPR_18: Tetratricopep 98.2 3.2E-05 7E-10 70.9 12.8 107 54-183 11-133 (142)
174 KOG4648 Uncharacterized conser 98.2 3.7E-06 8.1E-11 86.4 7.2 95 96-216 104-200 (536)
175 KOG4648 Uncharacterized conser 98.2 1.1E-05 2.4E-10 83.0 10.6 102 56-185 100-201 (536)
176 PRK15331 chaperone protein Sic 98.1 4E-05 8.7E-10 71.8 12.8 111 46-185 30-140 (165)
177 PF04733 Coatomer_E: Coatomer 98.1 4.7E-05 1E-09 77.4 14.0 131 27-185 139-272 (290)
178 KOG4555 TPR repeat-containing 98.1 0.00011 2.5E-09 66.8 13.9 104 56-183 46-149 (175)
179 COG3071 HemY Uncharacterized e 98.1 0.0024 5.2E-08 67.0 25.4 191 21-214 120-361 (400)
180 COG1729 Uncharacterized protei 98.0 2.8E-05 6.1E-10 77.8 10.6 92 152-243 144-249 (262)
181 KOG3081 Vesicle coat complex C 98.0 0.00048 1E-08 69.1 18.5 176 33-216 86-277 (299)
182 PF13512 TPR_18: Tetratricopep 98.0 0.00015 3.2E-09 66.5 13.1 79 96-197 17-99 (142)
183 PF06552 TOM20_plant: Plant sp 98.0 7.6E-05 1.7E-09 70.9 11.4 53 164-216 50-115 (186)
184 PF00515 TPR_1: Tetratricopept 98.0 1.4E-05 2.9E-10 54.5 4.5 33 150-182 2-34 (34)
185 KOG2796 Uncharacterized conser 97.9 0.00032 7E-09 70.4 15.7 142 54-216 178-321 (366)
186 PF13428 TPR_14: Tetratricopep 97.9 1.8E-05 3.9E-10 57.6 5.1 41 150-190 2-43 (44)
187 PF07719 TPR_2: Tetratricopept 97.9 2.8E-05 6.1E-10 52.5 5.1 33 150-182 2-34 (34)
188 KOG1941 Acetylcholine receptor 97.9 0.00088 1.9E-08 69.8 17.7 143 54-212 123-277 (518)
189 COG4785 NlpI Lipoprotein NlpI, 97.8 7.1E-05 1.5E-09 73.2 8.6 96 95-216 71-168 (297)
190 COG4785 NlpI Lipoprotein NlpI, 97.8 0.0005 1.1E-08 67.4 14.1 149 32-182 78-270 (297)
191 PF13431 TPR_17: Tetratricopep 97.8 1.9E-05 4.1E-10 54.9 3.0 33 171-203 1-34 (34)
192 KOG1070 rRNA processing protei 97.7 0.0022 4.7E-08 75.6 20.4 180 5-213 1444-1632(1710)
193 KOG4642 Chaperone-dependent E3 97.7 7.4E-05 1.6E-09 73.8 7.2 89 97-211 18-108 (284)
194 KOG4555 TPR repeat-containing 97.7 0.00031 6.7E-09 64.0 10.6 94 96-215 50-149 (175)
195 KOG1586 Protein required for f 97.6 0.0075 1.6E-07 59.8 19.0 174 22-216 37-230 (288)
196 PF10300 DUF3808: Protein of u 97.6 0.0042 9.1E-08 67.3 18.5 152 31-207 200-373 (468)
197 PF13431 TPR_17: Tetratricopep 97.5 7.5E-05 1.6E-09 51.9 3.0 34 41-74 1-34 (34)
198 KOG3081 Vesicle coat complex C 97.4 0.0086 1.9E-07 60.3 17.3 161 53-216 72-242 (299)
199 PF13181 TPR_8: Tetratricopept 97.4 0.00023 4.9E-09 48.2 4.2 33 150-182 2-34 (34)
200 COG4105 ComL DNA uptake lipopr 97.4 0.029 6.3E-07 56.2 19.9 140 52-214 33-200 (254)
201 KOG2053 Mitochondrial inherita 97.3 0.051 1.1E-06 62.1 23.8 58 157-214 198-259 (932)
202 KOG0545 Aryl-hydrocarbon recep 97.3 0.0016 3.5E-08 64.9 10.6 110 96-214 185-297 (329)
203 KOG3785 Uncharacterized conser 97.3 0.0094 2E-07 62.2 16.4 152 26-203 64-242 (557)
204 KOG2796 Uncharacterized conser 97.3 0.0055 1.2E-07 61.8 13.7 130 28-183 186-320 (366)
205 PF03704 BTAD: Bacterial trans 97.3 0.011 2.3E-07 53.1 14.4 59 149-207 62-122 (146)
206 PF04184 ST7: ST7 protein; In 97.3 0.0093 2E-07 64.5 16.1 129 21-175 170-321 (539)
207 COG3118 Thioredoxin domain-con 97.2 0.034 7.3E-07 56.8 19.1 149 34-214 117-269 (304)
208 KOG2053 Mitochondrial inherita 97.2 0.0068 1.5E-07 69.0 15.3 146 29-203 19-166 (932)
209 KOG4642 Chaperone-dependent E3 97.2 0.00092 2E-08 66.3 7.5 91 60-178 17-107 (284)
210 PF04184 ST7: ST7 protein; In 97.2 0.014 3E-07 63.2 16.7 141 61-209 176-322 (539)
211 COG3898 Uncharacterized membra 97.2 0.11 2.4E-06 55.0 22.6 175 16-213 115-295 (531)
212 PF07719 TPR_2: Tetratricopept 97.2 0.001 2.3E-08 44.7 5.2 33 54-86 2-34 (34)
213 KOG4340 Uncharacterized conser 97.2 0.012 2.6E-07 60.3 15.0 165 13-203 38-262 (459)
214 KOG1915 Cell cycle control pro 97.2 0.047 1E-06 59.0 19.9 207 4-214 58-277 (677)
215 PF13428 TPR_14: Tetratricopep 97.1 0.0012 2.7E-08 47.9 5.6 38 54-91 2-39 (44)
216 COG2976 Uncharacterized protei 97.1 0.022 4.8E-07 55.0 15.6 119 71-214 70-192 (207)
217 KOG0545 Aryl-hydrocarbon recep 97.1 0.0048 1E-07 61.6 11.4 106 54-185 179-300 (329)
218 KOG0376 Serine-threonine phosp 97.1 0.00077 1.7E-08 72.1 6.2 93 98-216 13-107 (476)
219 PF00515 TPR_1: Tetratricopept 97.1 0.00097 2.1E-08 45.2 4.6 32 54-85 2-33 (34)
220 PF03704 BTAD: Bacterial trans 97.0 0.021 4.5E-07 51.2 14.1 95 26-122 13-129 (146)
221 KOG1915 Cell cycle control pro 97.0 0.035 7.6E-07 59.9 17.6 156 29-213 376-539 (677)
222 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0042 9.1E-08 64.1 10.4 96 96-213 88-185 (390)
223 KOG1941 Acetylcholine receptor 97.0 0.028 6E-07 59.0 16.0 137 25-181 128-278 (518)
224 PF05843 Suf: Suppressor of fo 97.0 0.018 3.9E-07 58.1 14.6 134 24-182 6-140 (280)
225 COG3118 Thioredoxin domain-con 97.0 0.032 6.8E-07 57.0 15.8 152 28-207 143-298 (304)
226 KOG1585 Protein required for f 97.0 0.1 2.2E-06 52.3 18.9 166 19-206 31-214 (308)
227 PF13176 TPR_7: Tetratricopept 96.9 0.0013 2.9E-08 45.8 4.2 29 151-179 1-29 (36)
228 KOG2610 Uncharacterized conser 96.9 0.015 3.3E-07 60.3 13.4 125 58-207 108-234 (491)
229 KOG0376 Serine-threonine phosp 96.9 0.0017 3.8E-08 69.5 6.2 116 60-203 11-129 (476)
230 COG2976 Uncharacterized protei 96.8 0.099 2.2E-06 50.6 17.0 100 57-183 93-193 (207)
231 KOG2300 Uncharacterized conser 96.8 0.25 5.3E-06 53.7 21.4 192 29-244 333-543 (629)
232 COG3898 Uncharacterized membra 96.8 0.074 1.6E-06 56.3 17.2 156 24-209 234-391 (531)
233 PF10300 DUF3808: Protein of u 96.8 0.021 4.5E-07 62.0 13.7 125 31-180 245-378 (468)
234 PF13174 TPR_6: Tetratricopept 96.7 0.0023 5.1E-08 42.5 4.0 33 150-182 1-33 (33)
235 KOG1586 Protein required for f 96.7 0.24 5.3E-06 49.4 19.3 147 19-185 74-231 (288)
236 KOG2047 mRNA splicing factor [ 96.6 0.13 2.9E-06 57.3 18.5 230 12-243 342-617 (835)
237 PF05843 Suf: Suppressor of fo 96.6 0.042 9E-07 55.5 13.8 130 56-213 4-139 (280)
238 KOG1585 Protein required for f 96.6 0.057 1.2E-06 54.1 14.1 132 54-207 32-176 (308)
239 smart00028 TPR Tetratricopepti 96.6 0.0039 8.4E-08 38.9 4.1 33 150-182 2-34 (34)
240 PF02259 FAT: FAT domain; Int 96.5 0.16 3.4E-06 51.4 17.2 145 51-195 144-305 (352)
241 COG0790 FOG: TPR repeat, SEL1 96.4 0.16 3.5E-06 50.5 16.5 46 148-196 186-236 (292)
242 PF12968 DUF3856: Domain of Un 96.4 0.17 3.8E-06 45.6 14.6 100 64-178 20-129 (144)
243 PF14561 TPR_20: Tetratricopep 96.4 0.019 4.2E-07 48.6 8.3 78 39-116 8-85 (90)
244 KOG1070 rRNA processing protei 96.4 0.5 1.1E-05 56.7 22.2 153 32-211 1510-1664(1710)
245 KOG1308 Hsp70-interacting prot 96.4 0.0016 3.5E-08 67.4 1.9 88 100-213 125-214 (377)
246 KOG2047 mRNA splicing factor [ 96.3 0.53 1.1E-05 52.7 20.9 222 23-246 391-656 (835)
247 PF13181 TPR_8: Tetratricopept 96.3 0.008 1.7E-07 40.5 4.7 32 54-85 2-33 (34)
248 PF13281 DUF4071: Domain of un 96.3 0.31 6.6E-06 51.7 18.3 173 31-238 153-357 (374)
249 KOG3617 WD40 and TPR repeat-co 96.3 0.16 3.5E-06 58.0 16.8 58 150-207 913-993 (1416)
250 KOG2471 TPR repeat-containing 96.3 0.018 3.9E-07 62.2 9.0 155 30-194 217-381 (696)
251 PF13281 DUF4071: Domain of un 96.2 0.19 4.2E-06 53.1 16.5 123 53-202 141-279 (374)
252 KOG2610 Uncharacterized conser 96.2 0.097 2.1E-06 54.6 13.6 159 31-215 115-283 (491)
253 PF13174 TPR_6: Tetratricopept 96.1 0.0091 2E-07 39.6 3.9 32 54-85 1-32 (33)
254 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.017 3.6E-07 44.5 5.8 38 150-187 2-39 (53)
255 KOG3617 WD40 and TPR repeat-co 96.0 0.2 4.3E-06 57.3 15.9 119 53-178 858-996 (1416)
256 PF14561 TPR_20: Tetratricopep 96.0 0.023 5E-07 48.1 6.7 49 168-216 7-57 (90)
257 KOG1308 Hsp70-interacting prot 96.0 0.0058 1.2E-07 63.3 3.5 95 61-183 122-216 (377)
258 KOG4507 Uncharacterized conser 95.9 0.032 6.9E-07 61.4 8.7 96 99-219 617-714 (886)
259 PF13176 TPR_7: Tetratricopept 95.9 0.016 3.5E-07 40.3 4.4 28 55-82 1-28 (36)
260 PF13374 TPR_10: Tetratricopep 95.8 0.018 4E-07 39.9 4.6 29 150-178 3-31 (42)
261 PF09986 DUF2225: Uncharacteri 95.6 0.31 6.8E-06 47.6 14.0 108 63-183 87-199 (214)
262 PRK10941 hypothetical protein; 95.6 0.11 2.3E-06 52.7 11.1 67 150-216 182-250 (269)
263 PF09986 DUF2225: Uncharacteri 95.5 0.33 7.2E-06 47.5 13.6 93 102-213 90-196 (214)
264 KOG2300 Uncharacterized conser 95.5 1.9 4.1E-05 47.2 19.9 205 32-267 288-543 (629)
265 KOG4507 Uncharacterized conser 95.4 0.033 7.2E-07 61.3 6.6 103 58-187 611-714 (886)
266 KOG1550 Extracellular protein 95.4 0.86 1.9E-05 50.6 17.9 153 20-208 245-424 (552)
267 PF08424 NRDE-2: NRDE-2, neces 95.3 2.5 5.5E-05 43.6 20.2 117 5-121 5-134 (321)
268 KOG3824 Huntingtin interacting 94.9 0.061 1.3E-06 55.4 6.8 64 154-217 121-186 (472)
269 PF04910 Tcf25: Transcriptiona 94.7 0.62 1.3E-05 49.1 14.0 154 31-213 22-225 (360)
270 PRK10941 hypothetical protein; 94.7 0.33 7.2E-06 49.2 11.3 65 25-89 187-251 (269)
271 KOG0551 Hsp90 co-chaperone CNS 94.6 0.18 3.8E-06 52.5 9.2 93 27-121 89-185 (390)
272 smart00028 TPR Tetratricopepti 94.6 0.06 1.3E-06 33.2 3.9 31 55-85 3-33 (34)
273 COG2909 MalT ATP-dependent tra 94.5 2.5 5.4E-05 49.0 18.7 204 3-209 402-646 (894)
274 PF10602 RPN7: 26S proteasome 94.5 0.53 1.2E-05 44.6 11.6 108 53-180 36-144 (177)
275 PF09613 HrpB1_HrpK: Bacterial 94.5 2.1 4.6E-05 40.3 15.2 67 146-212 41-108 (160)
276 KOG2471 TPR repeat-containing 94.2 0.32 6.9E-06 53.0 10.3 83 151-239 285-387 (696)
277 PF04910 Tcf25: Transcriptiona 94.2 2.3 4.9E-05 44.9 16.6 155 6-183 27-227 (360)
278 PF02259 FAT: FAT domain; Int 94.1 1.7 3.7E-05 43.8 15.1 61 21-81 148-212 (352)
279 COG0790 FOG: TPR repeat, SEL1 94.0 4.7 0.0001 40.1 17.9 149 31-212 53-222 (292)
280 PF13374 TPR_10: Tetratricopep 93.9 0.13 2.9E-06 35.5 4.8 29 54-82 3-31 (42)
281 PF12968 DUF3856: Domain of Un 93.9 1.2 2.7E-05 40.2 11.7 92 27-118 17-129 (144)
282 KOG1550 Extracellular protein 93.6 1.9 4.1E-05 47.9 15.4 141 35-211 228-394 (552)
283 KOG1464 COP9 signalosome, subu 93.4 9.5 0.00021 39.3 18.5 212 29-246 37-292 (440)
284 PF04053 Coatomer_WDAD: Coatom 93.3 2.4 5.1E-05 46.0 15.3 128 26-205 268-396 (443)
285 KOG3616 Selective LIM binding 93.2 1.2 2.6E-05 50.7 12.8 183 21-207 663-908 (1636)
286 PF12862 Apc5: Anaphase-promot 93.1 0.36 7.9E-06 40.7 6.9 69 99-184 8-76 (94)
287 PF07079 DUF1347: Protein of u 93.0 6.2 0.00013 43.0 17.3 59 150-209 461-522 (549)
288 PF14853 Fis1_TPR_C: Fis1 C-te 92.8 0.5 1.1E-05 36.3 6.7 36 54-89 2-37 (53)
289 PF08631 SPO22: Meiosis protei 92.7 4.5 9.9E-05 40.7 15.4 92 100-209 4-111 (278)
290 PF10373 EST1_DNA_bind: Est1 D 92.4 0.45 9.7E-06 46.7 7.6 60 168-227 1-62 (278)
291 COG4649 Uncharacterized protei 92.2 9.4 0.0002 36.9 15.6 148 60-237 65-216 (221)
292 COG3914 Spy Predicted O-linked 92.1 2.6 5.7E-05 46.9 13.6 28 156-183 149-176 (620)
293 PF10602 RPN7: 26S proteasome 92.1 1.8 3.9E-05 41.0 11.0 97 93-212 40-144 (177)
294 PF08424 NRDE-2: NRDE-2, neces 91.8 9.7 0.00021 39.3 16.8 147 40-211 6-184 (321)
295 PF10345 Cohesin_load: Cohesin 91.7 15 0.00032 41.3 19.5 151 35-208 37-206 (608)
296 COG4976 Predicted methyltransf 91.3 0.27 5.8E-06 49.0 4.5 59 158-216 4-64 (287)
297 PF07720 TPR_3: Tetratricopept 91.1 0.59 1.3E-05 33.1 5.0 33 150-182 2-36 (36)
298 KOG3824 Huntingtin interacting 91.1 0.58 1.3E-05 48.5 6.9 63 30-92 127-189 (472)
299 PF12862 Apc5: Anaphase-promot 91.1 1.6 3.4E-05 36.8 8.5 74 159-237 8-92 (94)
300 COG3914 Spy Predicted O-linked 91.0 5.6 0.00012 44.4 14.6 52 38-89 50-103 (620)
301 TIGR02561 HrpB1_HrpK type III 90.9 2.7 5.8E-05 39.3 10.4 53 146-198 41-94 (153)
302 PF09613 HrpB1_HrpK: Bacterial 90.7 3.3 7.1E-05 39.0 10.9 83 21-105 12-94 (160)
303 PF08631 SPO22: Meiosis protei 90.6 20 0.00044 36.0 19.8 62 150-211 85-151 (278)
304 KOG0985 Vesicle coat protein c 90.6 7.5 0.00016 46.1 15.5 150 33-207 1089-1246(1666)
305 COG1747 Uncharacterized N-term 90.6 32 0.0007 38.3 21.0 170 40-214 87-292 (711)
306 KOG1839 Uncharacterized protei 90.1 2.8 6.1E-05 50.3 12.1 165 24-208 937-1126(1236)
307 KOG2581 26S proteasome regulat 90.1 7.3 0.00016 41.9 13.9 192 31-244 138-352 (493)
308 PF07721 TPR_4: Tetratricopept 89.9 0.37 8.1E-06 31.1 2.8 23 151-173 3-25 (26)
309 KOG0530 Protein farnesyltransf 89.6 11 0.00023 38.6 14.1 69 148-216 146-222 (318)
310 PF10579 Rapsyn_N: Rapsyn N-te 88.8 2.9 6.2E-05 35.0 7.9 60 151-210 8-72 (80)
311 PF15015 NYD-SP12_N: Spermatog 88.8 2.3 5.1E-05 45.7 9.3 104 97-208 184-289 (569)
312 PF10516 SHNi-TPR: SHNi-TPR; 88.7 0.6 1.3E-05 33.5 3.4 30 150-179 2-31 (38)
313 PF10345 Cohesin_load: Cohesin 88.6 47 0.001 37.3 20.2 159 24-203 64-246 (608)
314 PF04781 DUF627: Protein of un 87.9 5.7 0.00012 35.2 9.7 34 145-178 74-107 (111)
315 KOG4814 Uncharacterized conser 87.8 3 6.5E-05 47.0 9.6 91 98-208 363-454 (872)
316 KOG2041 WD40 repeat protein [G 86.9 9 0.0002 43.8 12.7 28 146-173 849-876 (1189)
317 COG4976 Predicted methyltransf 86.8 0.97 2.1E-05 45.2 4.8 59 29-87 5-63 (287)
318 KOG3364 Membrane protein invol 86.3 4.1 8.9E-05 37.6 8.2 67 150-216 33-106 (149)
319 KOG1258 mRNA processing protei 86.3 59 0.0013 36.5 18.5 94 28-123 306-400 (577)
320 PRK13184 pknD serine/threonine 86.0 8.3 0.00018 45.7 12.6 136 97-256 483-635 (932)
321 PF11207 DUF2989: Protein of u 86.0 9.7 0.00021 37.2 11.1 100 7-109 96-198 (203)
322 COG2912 Uncharacterized conser 85.9 2.4 5.1E-05 43.1 7.1 62 58-121 186-247 (269)
323 COG2909 MalT ATP-dependent tra 85.9 66 0.0014 37.9 19.2 167 23-212 351-528 (894)
324 PF07721 TPR_4: Tetratricopept 85.7 0.94 2E-05 29.2 2.8 23 55-77 3-25 (26)
325 KOG3616 Selective LIM binding 85.2 11 0.00025 43.3 12.4 42 143-184 989-1030(1636)
326 COG2912 Uncharacterized conser 84.6 3.3 7.2E-05 42.1 7.4 67 150-216 182-250 (269)
327 KOG0686 COP9 signalosome, subu 84.5 9.6 0.00021 41.0 11.0 173 53-243 150-338 (466)
328 KOG1839 Uncharacterized protei 84.1 11 0.00023 45.6 12.3 134 58-211 937-1087(1236)
329 KOG1310 WD40 repeat protein [G 84.1 3.1 6.8E-05 46.0 7.4 85 104-214 389-478 (758)
330 KOG1914 mRNA cleavage and poly 83.8 78 0.0017 35.5 17.7 53 158-210 410-464 (656)
331 PF00244 14-3-3: 14-3-3 protei 83.6 47 0.001 32.9 15.1 72 165-238 142-224 (236)
332 COG3629 DnrI DNA-binding trans 83.3 5.9 0.00013 40.5 8.7 66 52-119 152-217 (280)
333 PF11207 DUF2989: Protein of u 83.3 3.8 8.2E-05 40.0 7.0 55 147-202 139-198 (203)
334 TIGR03504 FimV_Cterm FimV C-te 83.0 1.7 3.8E-05 32.1 3.5 22 187-208 4-26 (44)
335 PF07720 TPR_3: Tetratricopept 83.0 3.8 8.3E-05 28.9 5.1 32 54-85 2-35 (36)
336 KOG2422 Uncharacterized conser 82.6 92 0.002 35.2 18.4 154 34-212 253-450 (665)
337 KOG3783 Uncharacterized conser 81.7 94 0.002 34.7 19.4 203 7-212 255-522 (546)
338 KOG3364 Membrane protein invol 81.6 3.5 7.6E-05 38.1 5.7 38 150-187 72-109 (149)
339 TIGR02561 HrpB1_HrpK type III 81.5 15 0.00032 34.5 9.8 65 23-87 14-78 (153)
340 KOG2396 HAT (Half-A-TPR) repea 81.2 23 0.00049 39.2 12.5 70 148-217 104-176 (568)
341 PF04190 DUF410: Protein of un 80.9 47 0.001 33.3 14.1 56 148-203 89-162 (260)
342 PRK15180 Vi polysaccharide bio 80.7 8.8 0.00019 42.2 9.1 147 28-203 298-449 (831)
343 COG3629 DnrI DNA-binding trans 80.5 8.1 0.00018 39.6 8.5 63 146-208 150-214 (280)
344 KOG3807 Predicted membrane pro 80.4 66 0.0014 34.2 15.0 98 21-120 186-306 (556)
345 PRK13184 pknD serine/threonine 80.3 10 0.00022 44.9 10.4 93 27-122 483-585 (932)
346 PRK15180 Vi polysaccharide bio 79.8 8.7 0.00019 42.2 8.8 120 146-267 320-444 (831)
347 PF04781 DUF627: Protein of un 79.5 13 0.00027 33.1 8.3 45 167-211 62-108 (111)
348 KOG2581 26S proteasome regulat 78.9 51 0.0011 35.7 13.9 136 60-216 133-282 (493)
349 PF10373 EST1_DNA_bind: Est1 D 78.9 6.8 0.00015 38.3 7.3 61 108-194 1-62 (278)
350 PF09670 Cas_Cas02710: CRISPR- 77.7 62 0.0013 34.4 14.5 61 58-118 136-198 (379)
351 KOG2396 HAT (Half-A-TPR) repea 77.2 17 0.00036 40.2 10.0 87 36-123 88-174 (568)
352 KOG1538 Uncharacterized conser 76.7 12 0.00026 42.5 8.9 26 150-175 805-830 (1081)
353 KOG0985 Vesicle coat protein c 76.4 72 0.0016 38.4 15.1 55 147-206 1102-1157(1666)
354 COG5159 RPN6 26S proteasome re 75.7 39 0.00085 35.2 11.6 94 26-119 132-236 (421)
355 KOG1463 26S proteasome regulat 75.0 35 0.00077 36.1 11.3 45 168-212 270-318 (411)
356 smart00101 14_3_3 14-3-3 homol 74.8 97 0.0021 31.1 15.7 45 165-209 144-199 (244)
357 PF15015 NYD-SP12_N: Spermatog 74.7 13 0.00029 40.2 8.4 91 60-176 183-289 (569)
358 KOG0276 Vesicle coat complex C 74.6 26 0.00057 39.6 10.8 79 56-178 617-695 (794)
359 PF07079 DUF1347: Protein of u 74.3 68 0.0015 35.3 13.5 31 143-174 490-520 (549)
360 COG4649 Uncharacterized protei 73.0 97 0.0021 30.2 16.1 136 31-192 70-210 (221)
361 KOG1310 WD40 repeat protein [G 72.8 15 0.00033 40.9 8.3 91 67-185 388-481 (758)
362 KOG4814 Uncharacterized conser 72.1 1.3E+02 0.0028 34.6 15.3 98 56-179 357-458 (872)
363 PF10579 Rapsyn_N: Rapsyn N-te 71.6 33 0.00072 28.8 8.3 63 56-118 9-72 (80)
364 PF10516 SHNi-TPR: SHNi-TPR; 71.0 6.8 0.00015 28.1 3.6 25 95-119 7-31 (38)
365 PF10255 Paf67: RNA polymerase 70.7 5.7 0.00012 42.7 4.6 65 95-177 128-192 (404)
366 TIGR03504 FimV_Cterm FimV C-te 69.4 7.8 0.00017 28.7 3.8 25 153-177 3-27 (44)
367 PF04053 Coatomer_WDAD: Coatom 68.9 45 0.00098 36.3 11.1 73 28-118 304-376 (443)
368 PF11817 Foie-gras_1: Foie gra 68.3 49 0.0011 32.7 10.5 57 151-207 180-244 (247)
369 PF09670 Cas_Cas02710: CRISPR- 67.9 1.4E+02 0.003 31.8 14.3 54 29-82 141-198 (379)
370 PF12854 PPR_1: PPR repeat 66.5 11 0.00023 25.8 3.8 23 92-114 10-32 (34)
371 cd02682 MIT_AAA_Arch MIT: doma 65.7 25 0.00054 29.1 6.4 27 151-177 8-34 (75)
372 COG3014 Uncharacterized protei 64.4 1.2E+02 0.0026 32.3 12.5 84 38-121 40-157 (449)
373 KOG0546 HSP90 co-chaperone CPR 63.4 11 0.00023 39.9 4.7 113 97-216 230-344 (372)
374 PF11817 Foie-gras_1: Foie gra 63.4 67 0.0015 31.8 10.3 82 34-115 153-244 (247)
375 KOG2041 WD40 repeat protein [G 61.7 75 0.0016 36.8 11.1 25 54-78 797-821 (1189)
376 cd02680 MIT_calpain7_2 MIT: do 60.4 14 0.00031 30.5 4.1 34 34-82 2-35 (75)
377 PF04212 MIT: MIT (microtubule 59.9 20 0.00044 28.2 4.9 27 151-177 7-33 (69)
378 cd02680 MIT_calpain7_2 MIT: do 59.7 17 0.00036 30.1 4.4 22 157-178 14-35 (75)
379 COG3947 Response regulator con 59.2 29 0.00063 36.1 6.9 53 151-203 281-334 (361)
380 PF12739 TRAPPC-Trs85: ER-Golg 59.1 2.5E+02 0.0055 30.0 15.7 153 24-178 213-399 (414)
381 PF10255 Paf67: RNA polymerase 57.3 22 0.00048 38.2 6.0 63 56-118 125-193 (404)
382 KOG0530 Protein farnesyltransf 57.1 2.4E+02 0.0053 29.2 13.6 154 14-215 23-181 (318)
383 PF12854 PPR_1: PPR repeat 56.8 22 0.00048 24.3 4.0 27 53-79 7-33 (34)
384 KOG0546 HSP90 co-chaperone CPR 56.7 14 0.0003 39.0 4.3 52 144-195 304-356 (372)
385 KOG1464 COP9 signalosome, subu 56.5 2.6E+02 0.0055 29.2 13.5 125 66-210 40-173 (440)
386 PF14863 Alkyl_sulf_dimr: Alky 56.1 33 0.00072 31.5 6.2 49 150-198 71-120 (141)
387 KOG0890 Protein kinase of the 56.0 41 0.00089 43.3 8.6 122 58-210 1388-1511(2382)
388 smart00386 HAT HAT (Half-A-TPR 55.4 30 0.00065 21.8 4.3 25 163-187 1-25 (33)
389 COG5191 Uncharacterized conser 54.6 22 0.00048 37.3 5.2 72 146-217 104-178 (435)
390 KOG2168 Cullins [Cell cycle co 54.6 2.1E+02 0.0045 33.8 13.3 24 193-216 718-741 (835)
391 COG3947 Response regulator con 53.3 54 0.0012 34.2 7.6 102 6-119 228-343 (361)
392 KOG2114 Vacuolar assembly/sort 53.1 2E+02 0.0043 34.0 12.7 50 155-208 496-548 (933)
393 KOG1914 mRNA cleavage and poly 52.2 4E+02 0.0087 30.2 15.8 62 151-212 437-503 (656)
394 TIGR02710 CRISPR-associated pr 51.3 3E+02 0.0065 29.6 13.2 56 59-114 136-196 (380)
395 PF13041 PPR_2: PPR repeat fam 51.0 68 0.0015 23.1 6.1 30 54-83 4-33 (50)
396 cd02681 MIT_calpain7_1 MIT: do 50.9 31 0.00067 28.5 4.6 28 151-178 8-35 (76)
397 PF14863 Alkyl_sulf_dimr: Alky 50.9 42 0.0009 30.9 6.0 49 55-105 72-120 (141)
398 KOG0890 Protein kinase of the 50.6 3.9E+02 0.0085 35.2 15.6 148 51-214 1668-1837(2382)
399 PF09205 DUF1955: Domain of un 50.5 1.2E+02 0.0027 28.3 8.8 32 148-179 119-150 (161)
400 PHA02537 M terminase endonucle 50.4 75 0.0016 31.7 8.1 34 150-183 170-212 (230)
401 PF01535 PPR: PPR repeat; Int 49.8 23 0.00051 22.3 3.1 19 97-115 8-26 (31)
402 PF11846 DUF3366: Domain of un 49.6 66 0.0014 30.3 7.4 31 54-84 145-175 (193)
403 TIGR00756 PPR pentatricopeptid 49.6 34 0.00074 21.8 3.9 23 58-80 5-27 (35)
404 KOG0529 Protein geranylgeranyl 48.9 3.9E+02 0.0084 29.1 15.3 106 142-247 102-230 (421)
405 COG4455 ImpE Protein of avirul 48.8 3E+02 0.0066 27.8 13.0 58 29-86 11-68 (273)
406 PF04212 MIT: MIT (microtubule 48.3 30 0.00066 27.2 4.1 18 101-118 17-34 (69)
407 PF08238 Sel1: Sel1 repeat; I 48.2 39 0.00085 22.7 4.2 30 150-179 2-38 (39)
408 KOG1538 Uncharacterized conser 47.7 5.1E+02 0.011 30.2 14.9 44 160-207 784-830 (1081)
409 KOG3807 Predicted membrane pro 47.7 3.8E+02 0.0083 28.7 13.9 137 59-203 190-332 (556)
410 PF13041 PPR_2: PPR repeat fam 47.2 37 0.00081 24.6 4.2 27 92-118 6-32 (50)
411 cd02683 MIT_1 MIT: domain cont 46.8 28 0.0006 28.7 3.7 27 151-177 8-34 (77)
412 KOG1920 IkappaB kinase complex 46.6 5.8E+02 0.013 31.5 15.5 51 153-203 956-1020(1265)
413 TIGR00756 PPR pentatricopeptid 45.4 46 0.001 21.1 4.1 25 93-117 4-28 (35)
414 smart00671 SEL1 Sel1-like repe 45.2 38 0.00083 22.2 3.7 29 151-179 3-35 (36)
415 COG4455 ImpE Protein of avirul 43.8 1.4E+02 0.003 30.2 8.6 60 157-216 9-70 (273)
416 cd02681 MIT_calpain7_1 MIT: do 43.5 41 0.00089 27.7 4.3 17 102-118 19-35 (76)
417 PF04762 IKI3: IKI3 family; I 43.4 2E+02 0.0044 34.3 11.6 46 189-234 879-926 (928)
418 PRK11619 lytic murein transgly 43.1 5.7E+02 0.012 29.3 14.8 29 149-177 346-374 (644)
419 PHA02537 M terminase endonucle 43.0 2.4E+02 0.0052 28.2 10.3 92 30-122 94-211 (230)
420 KOG3024 Uncharacterized conser 42.8 3.8E+02 0.0083 27.9 11.8 114 55-175 28-153 (312)
421 PF10952 DUF2753: Protein of u 42.0 2.4E+02 0.0053 25.9 9.2 92 151-243 3-116 (140)
422 cd02679 MIT_spastin MIT: domai 40.6 51 0.0011 27.5 4.4 23 101-123 20-42 (79)
423 PF13812 PPR_3: Pentatricopept 39.7 75 0.0016 20.4 4.4 25 56-80 4-28 (34)
424 PF11846 DUF3366: Domain of un 39.4 95 0.0021 29.2 6.7 49 165-213 127-176 (193)
425 PF01535 PPR: PPR repeat; Int 38.7 47 0.001 20.8 3.3 26 152-177 3-28 (31)
426 smart00745 MIT Microtubule Int 38.6 64 0.0014 25.8 4.7 26 152-177 11-36 (77)
427 KOG4014 Uncharacterized conser 38.5 3.2E+02 0.007 27.0 10.0 95 21-118 37-141 (248)
428 KOG1258 mRNA processing protei 38.2 6.5E+02 0.014 28.6 19.3 130 58-214 302-435 (577)
429 cd02683 MIT_1 MIT: domain cont 38.1 67 0.0014 26.4 4.7 17 102-118 19-35 (77)
430 smart00777 Mad3_BUB1_I Mad3/BU 38.0 1.2E+02 0.0027 27.3 6.8 46 69-114 79-124 (125)
431 KOG4279 Serine/threonine prote 37.6 30 0.00064 40.1 3.3 137 53-211 201-351 (1226)
432 KOG0292 Vesicle coat complex C 37.0 4.9E+02 0.011 31.3 12.7 27 58-84 996-1022(1202)
433 cd02656 MIT MIT: domain contai 36.5 73 0.0016 25.4 4.7 26 152-177 9-34 (75)
434 cd02678 MIT_VPS4 MIT: domain c 36.1 73 0.0016 25.7 4.6 27 151-177 8-34 (75)
435 COG5191 Uncharacterized conser 35.5 39 0.00085 35.5 3.6 78 44-122 98-175 (435)
436 KOG0687 26S proteasome regulat 35.3 5.8E+02 0.013 27.2 12.7 98 95-212 110-212 (393)
437 smart00745 MIT Microtubule Int 35.3 80 0.0017 25.2 4.7 18 102-119 21-38 (77)
438 smart00299 CLH Clathrin heavy 35.1 3.1E+02 0.0066 23.9 14.0 46 31-77 19-64 (140)
439 cd02682 MIT_AAA_Arch MIT: doma 34.8 80 0.0017 26.1 4.6 19 60-78 13-31 (75)
440 TIGR02710 CRISPR-associated pr 34.8 6.1E+02 0.013 27.3 13.3 50 29-78 140-196 (380)
441 PF09797 NatB_MDM20: N-acetylt 34.8 4.1E+02 0.009 27.6 11.2 42 70-113 200-241 (365)
442 PF09205 DUF1955: Domain of un 34.7 2.6E+02 0.0057 26.2 8.4 79 33-118 70-149 (161)
443 cd02678 MIT_VPS4 MIT: domain c 34.7 72 0.0016 25.7 4.4 17 102-118 19-35 (75)
444 KOG0276 Vesicle coat complex C 34.6 2.6E+02 0.0056 32.1 9.8 68 40-118 628-695 (794)
445 PF00244 14-3-3: 14-3-3 protei 34.3 2.2E+02 0.0048 28.2 8.6 58 151-208 3-63 (236)
446 PF04348 LppC: LppC putative l 33.4 14 0.0003 41.1 0.0 125 33-181 2-130 (536)
447 KOG2561 Adaptor protein NUB1, 33.0 1.3E+02 0.0028 33.0 7.0 115 57-178 167-296 (568)
448 cd02684 MIT_2 MIT: domain cont 31.8 83 0.0018 25.7 4.3 17 102-118 19-35 (75)
449 smart00299 CLH Clathrin heavy 31.7 3.5E+02 0.0076 23.6 10.0 50 61-113 15-64 (140)
450 PF07491 PPI_Ypi1: Protein pho 31.6 17 0.00037 28.9 0.2 17 385-401 13-29 (60)
451 KOG3783 Uncharacterized conser 31.6 3E+02 0.0064 30.9 9.6 137 31-194 202-350 (546)
452 KOG0739 AAA+-type ATPase [Post 30.9 3.3E+02 0.0071 28.9 9.2 15 162-176 23-37 (439)
453 PF07219 HemY_N: HemY protein 30.6 2.3E+02 0.0051 24.3 7.2 48 150-197 60-108 (108)
454 PF05053 Menin: Menin; InterP 30.2 3.4E+02 0.0075 30.8 9.8 89 150-238 278-378 (618)
455 cd02679 MIT_spastin MIT: domai 30.0 90 0.0019 26.0 4.2 24 153-176 12-35 (79)
456 COG5107 RNA14 Pre-mRNA 3'-end 29.8 8.3E+02 0.018 27.4 12.9 164 41-209 290-494 (660)
457 KOG2460 Signal recognition par 29.5 7.2E+02 0.016 28.1 12.0 24 153-176 426-449 (593)
458 COG5159 RPN6 26S proteasome re 29.3 7E+02 0.015 26.3 17.1 164 24-207 8-191 (421)
459 KOG2063 Vacuolar assembly/sort 29.3 1.1E+03 0.023 28.4 15.5 16 188-203 690-705 (877)
460 PF10938 YfdX: YfdX protein; 28.8 3.4E+02 0.0073 25.2 8.4 89 23-117 6-145 (155)
461 PRK09687 putative lyase; Provi 28.7 6.3E+02 0.014 25.6 15.6 96 17-118 64-170 (280)
462 cd02684 MIT_2 MIT: domain cont 28.7 81 0.0018 25.7 3.7 26 152-177 9-34 (75)
463 KOG0128 RNA-binding protein SA 28.6 6E+02 0.013 30.1 11.7 81 39-119 99-180 (881)
464 PF08311 Mad3_BUB1_I: Mad3/BUB 28.3 4.2E+02 0.0092 23.5 8.6 59 56-116 68-126 (126)
465 PF06957 COPI_C: Coatomer (COP 28.1 4.9E+02 0.011 28.4 10.5 27 58-84 209-235 (422)
466 PF04348 LppC: LppC putative l 27.5 20 0.00044 39.8 0.0 97 21-117 26-126 (536)
467 cd02677 MIT_SNX15 MIT: domain 27.2 79 0.0017 25.9 3.4 15 66-80 19-33 (75)
468 COG4259 Uncharacterized protei 26.8 1.2E+02 0.0026 26.9 4.6 34 150-183 73-106 (121)
469 KOG1463 26S proteasome regulat 26.4 8.4E+02 0.018 26.3 17.9 167 58-244 133-319 (411)
470 PF14929 TAF1_subA: TAF RNA Po 25.2 1E+03 0.022 26.9 16.3 44 165-208 391-439 (547)
471 KOG1497 COP9 signalosome, subu 24.6 6.8E+02 0.015 26.7 10.3 102 89-209 103-212 (399)
472 PF12583 TPPII_N: Tripeptidyl 24.6 1.2E+02 0.0027 27.9 4.4 40 53-92 76-115 (139)
473 KOG2422 Uncharacterized conser 24.4 1.1E+03 0.024 27.0 15.6 131 27-181 292-451 (665)
474 COG3014 Uncharacterized protei 24.3 4.1E+02 0.009 28.5 8.7 105 75-179 43-155 (449)
475 cd02677 MIT_SNX15 MIT: domain 23.9 1.3E+02 0.0028 24.6 4.1 25 153-177 10-34 (75)
476 PF02064 MAS20: MAS20 protein 23.5 1.5E+02 0.0034 26.6 4.9 31 153-183 67-97 (121)
477 PF07219 HemY_N: HemY protein 23.2 3.3E+02 0.0071 23.4 6.8 28 57-84 63-90 (108)
478 PF02064 MAS20: MAS20 protein 23.1 1.2E+02 0.0026 27.3 4.1 29 58-86 68-96 (121)
479 KOG4151 Myosin assembly protei 22.7 2.5E+02 0.0054 32.8 7.3 97 98-216 62-162 (748)
480 COG4941 Predicted RNA polymera 22.6 2.8E+02 0.006 29.7 7.1 88 33-121 310-397 (415)
481 PRK11619 lytic murein transgly 22.5 1.2E+03 0.026 26.7 16.6 161 35-206 295-464 (644)
482 PF08311 Mad3_BUB1_I: Mad3/BUB 22.3 5.5E+02 0.012 22.7 12.5 44 37-80 81-126 (126)
483 PRK12798 chemotaxis protein; R 22.3 1E+03 0.023 25.9 19.5 42 172-213 244-289 (421)
484 COG4259 Uncharacterized protei 21.9 1.8E+02 0.0039 25.8 4.7 48 169-216 57-107 (121)
485 PF12921 ATP13: Mitochondrial 20.6 5.5E+02 0.012 22.9 7.9 65 56-120 5-83 (126)
486 TIGR03362 VI_chp_7 type VI sec 20.5 3.6E+02 0.0078 27.9 7.5 58 60-117 220-278 (301)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=5.8e-22 Score=210.84 Aligned_cols=253 Identities=14% Similarity=0.119 Sum_probs=147.4
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH
Q 011721 9 FHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ 88 (479)
Q Consensus 9 ~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~ 88 (479)
+++|+-.|.=...|++++.++-..+.+++|+..|.+|+...|+++.++-+||.+|..+|..|-||..|++++++.|+.++
T Consensus 242 ~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 242 EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC---------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 89 ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG---------KSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 89 ~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~---------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
+.-+ |++.+...|+..+|..+|++||.+.|....... ..-+.|...+.++ +.+.|+.+.+++|||.+|
T Consensus 322 Ay~N--lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a-l~v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 322 AYNN--LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA-LEVFPEFAAAHNNLASIY 398 (966)
T ss_pred HHhH--HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH-HhhChhhhhhhhhHHHHH
Confidence 3322 344555555666666666666555543221100 0001122122211 456677777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHH
Q 011721 160 LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTE 234 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~e 234 (479)
.++|++++|+.+|+.||.|.|..+++++ +|.+|.++|+.++|+. +.+||.++|..+.+... .-+.-+...+++..
T Consensus 399 kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred HhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 7777777777777777777777777776 7777777777777777 77777777765554221 11333456677777
Q ss_pred HHhhhhcCCCChhhHHHHHhhhhhhhhcCCCC
Q 011721 235 LESQSMLQPTDYGEDKRKKILSSCTYINGSEE 266 (479)
Q Consensus 235 l~~a~~~~P~~~~~~~~~~~~~~~~~i~~~~~ 266 (479)
.+.+++++|+.+. +--|++.-...|..-.+
T Consensus 479 Y~~aLklkPDfpd--A~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 479 YRTALKLKPDFPD--AYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHccCCCCch--hhhHHHHHHHHHhcccc
Confidence 7777888887665 44455554444444443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=5.6e-22 Score=210.94 Aligned_cols=243 Identities=17% Similarity=0.122 Sum_probs=195.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
.++-+...+|+.-.|+.+|.+|++++|++.+||++||.||...+.|++|+.+|.+++.+.|+++.++-+ ++.+|..+|
T Consensus 223 nLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gN--la~iYyeqG 300 (966)
T KOG4626|consen 223 NLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGN--LACIYYEQG 300 (966)
T ss_pred hcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccc--eEEEEeccc
Confidence 344456678999999999999999999999999999999999999999999999999999998765433 457899999
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCC---------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGG---------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~---------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
.++-||..|++||++.|....... ..-..|..++.++ +.+.|..+++++|||++|.++|.+++|...|++
T Consensus 301 ~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka-L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 301 LLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA-LRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred cHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH-HHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999999887542211 1111333333332 678899999999999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChhhH
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYGED 249 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~~~ 249 (479)
|+++.|+.+.+++ ||.+|.++|++++|+. |.++|.+.|..+.+.. ...+.+++..++++-+.+++-.+|.--+
T Consensus 380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae-- 457 (966)
T KOG4626|consen 380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE-- 457 (966)
T ss_pred HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH--
Confidence 9999999999988 9999999999999999 9999999998766422 3457789999999999999999997322
Q ss_pred HHHHhhhhhhhhcCCCCCcccccchh
Q 011721 250 KRKKILSSCTYINGSEENVSRFMVPR 275 (479)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~~~~~~~ 275 (479)
+..|+-+ |-.-.|||...+.+-
T Consensus 458 AhsNLas----i~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 458 AHSNLAS----IYKDSGNIPEAIQSY 479 (966)
T ss_pred HHhhHHH----HhhccCCcHHHHHHH
Confidence 4444322 233345555554443
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=9.5e-18 Score=184.25 Aligned_cols=201 Identities=11% Similarity=0.014 Sum_probs=156.4
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
...+...+.+++..|++++|+..|.+++.++|++..++..+|.++...|++++|+..|++++..+|+++...+ .+|.+
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~--~lg~~ 408 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY--HRAQL 408 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHH
Confidence 3445556667777788888888888888888888888888888888888888888888888888888765443 35677
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
|...|++++|+.+|++++.++|. +..++.+||.++..+|++++|+..|++++.+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~--------------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPD--------------------------FIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCcc--------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888888888888888877544 4458899999999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----------HHHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE----------SYAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~----------~~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
.|+++..++ +|.+|..+|++++|+. +.+++.++|++..... ......++..+++..+++++.++|++.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 999999888 9999999999999999 9999999997533211 011112455556666777777788754
Q ss_pred h
Q 011721 247 G 247 (479)
Q Consensus 247 ~ 247 (479)
.
T Consensus 543 ~ 543 (615)
T TIGR00990 543 I 543 (615)
T ss_pred H
Confidence 3
No 4
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=5.5e-17 Score=180.26 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=61.6
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH-
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE- 219 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~- 219 (479)
.+.|++..++.++|.+|..+|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++..+|++.....
T Consensus 278 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 278 QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 445555556666666666666666666666666666666655544 6666666666666666 5555555555432111
Q ss_pred --HHHHHHHHHHHHHHHHHhhhhcCCCChhhHHHHHhhh
Q 011721 220 --SYAKSFEHASLMLTELESQSMLQPTDYGEDKRKKILS 256 (479)
Q Consensus 220 --~~~k~~~rA~eaL~el~~a~~~~P~~~~~~~~~~~~~ 256 (479)
......++..+++..+..++...|++....+.+.+..
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~ 396 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLA 396 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHH
Confidence 1122334445555555555555665554444444433
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=1.2e-16 Score=177.64 Aligned_cols=236 Identities=13% Similarity=0.070 Sum_probs=174.0
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+..++...|.+......++...+..|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.++|+++
T Consensus 65 ~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~ 144 (656)
T PRK15174 65 LSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS 144 (656)
T ss_pred hHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 44556677777777777777777788888888888888888888888888888888888888888888888888888876
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc--------CCCchH----------------------------
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC--------GGKSTK---------------------------- 131 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~--------~~k~~~---------------------------- 131 (479)
.... .++.+|...|++++|+..|++++...|..... ......
T Consensus 145 ~a~~--~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l 222 (656)
T PRK15174 145 QIFA--LHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTL 222 (656)
T ss_pred HHHH--HHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 5433 35567788888888888887777665532100 000001
Q ss_pred -------HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHH
Q 011721 132 -------IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES----AERYYMKALSLESDKNKQCN-LAICLIRLNRIA 199 (479)
Q Consensus 132 -------~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde----A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~d 199 (479)
.|...+.. .+.+.|+++.++++||.+|..+|++++ |+.+|+++++++|+++.++. ||.+|..+|+++
T Consensus 223 ~~~g~~~eA~~~~~~-al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 223 CAVGKYQEAIQTGES-ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHCCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 11111111 146678888999999999999999996 89999999999999998887 999999999999
Q ss_pred HHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 200 EAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 200 EAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
+|+. +.+++.++|++..+... .....++..+++..+...+..+|.+.
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 9999 88999999998764321 12334556666777777777788754
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=1.3e-16 Score=175.31 Aligned_cols=211 Identities=17% Similarity=0.089 Sum_probs=157.5
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
..+.+++...|.....|+..+.+++..|++++|+.+|.+++..+|++..+++.+|.++...|++++|+..|++++.++|+
T Consensus 352 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 352 ADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 45667777888877788888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
+....+ .++.+|.++|++++|+..|++++.++|.. +.+++++|.+|..+|++
T Consensus 432 ~~~~~~--~la~~~~~~g~~~eA~~~~~~al~~~P~~--------------------------~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 432 FIFSHI--QLGVTQYKEGSIASSMATFRRCKKNFPEA--------------------------PDVYNYYGELLLDQNKF 483 (615)
T ss_pred CHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------------------hHHHHHHHHHHHHccCH
Confidence 876543 46789999999999999999999986543 34667777777777777
Q ss_pred HHHHHHHHHHHHcCCCCHHH-------HHHH-HHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHH
Q 011721 166 ESAERYYMKALSLESDKNKQ-------CNLA-ICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLT 233 (479)
Q Consensus 166 deA~~~yrKALeLdPdna~a-------~nLG-~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~ 233 (479)
++|+.+|++|++++|++... ++.+ .++...|++++|+. +.+++.++|++..+.. ......++..+++.
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 77777777777777764311 1222 23333577777777 6777777776654311 11122344444445
Q ss_pred HHHhhhhcCCC
Q 011721 234 ELESQSMLQPT 244 (479)
Q Consensus 234 el~~a~~~~P~ 244 (479)
.++.++.+.+.
T Consensus 564 ~~e~A~~l~~~ 574 (615)
T TIGR00990 564 LFERAAELART 574 (615)
T ss_pred HHHHHHHHhcc
Confidence 55555555543
No 7
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=8.4e-16 Score=141.70 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=149.2
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..+...+..++..|++++|+..|.+++..+|+...++..+|.++...|++++|++.|++++...|.+.... ..++.+|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVL--NNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHH
Confidence 34556677888999999999999999999999999999999999999999999999999999999876543 3457889
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
...|++++|+..|++++...+. +....++.++|.+|...|++++|+.+|.+++.++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLY------------------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHcccHHHHHHHHHHHHhcccc------------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999975211 1223478889999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 180 SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|++...+. +|.++...|++++|+. +.+++...|.+..
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 99998877 9999999999999999 8888888776543
No 8
>PRK12370 invasion protein regulator; Provisional
Probab=99.74 E-value=2.3e-16 Score=171.96 Aligned_cols=214 Identities=13% Similarity=0.032 Sum_probs=169.8
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLV---------EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI 76 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~---------~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~l 76 (479)
..+.+++...|....+|...+.+++. .+++++|+.++++|++++|++..++..+|.++...|++++|+..|
T Consensus 282 ~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~ 361 (553)
T PRK12370 282 KLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLF 361 (553)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34677788889887777766655432 245899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 77 KSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 77 ekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
+++++++|+++..++ .++.+|..+|++++|+..|+++++++|... .++..++
T Consensus 362 ~~Al~l~P~~~~a~~--~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~--------------------------~~~~~~~ 413 (553)
T PRK12370 362 KQANLLSPISADIKY--YYGWNLFMAGQLEEALQTINECLKLDPTRA--------------------------AAGITKL 413 (553)
T ss_pred HHHHHhCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHhcCCCCh--------------------------hhHHHHH
Confidence 999999999987654 457889999999999999999999976532 2455667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----HHHHHHHHHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLE-SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE----SYAKSFEHAS 229 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLd-Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~----~~~k~~~rA~ 229 (479)
.+++.+|++++|+..++++++.. |+++..+. ||.+|..+|++++|+. +.+.+...|.+..+.. .+...-+++.
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~ 493 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERAL 493 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHH
Confidence 77888999999999999999885 78887766 9999999999999999 7666666665433211 1222225777
Q ss_pred HHHHHHHhhhhcCCCChh
Q 011721 230 LMLTELESQSMLQPTDYG 247 (479)
Q Consensus 230 eaL~el~~a~~~~P~~~~ 247 (479)
..|..+.+.....|.+..
T Consensus 494 ~~l~~ll~~~~~~~~~~~ 511 (553)
T PRK12370 494 PTIREFLESEQRIDNNPG 511 (553)
T ss_pred HHHHHHHHHhhHhhcCch
Confidence 777777776665555443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.72 E-value=1.4e-15 Score=178.61 Aligned_cols=190 Identities=14% Similarity=0.089 Sum_probs=132.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH------------HHHH
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE------------SLDN 93 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~------------~l~~ 93 (479)
+.+++..|++++|+..|+++++.+|++..++..||.+|..+|++++|+.+|++++.++|++... ....
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 5667888999999999999999999999999999999999999999999999999999986421 1222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH-----
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAY----- 159 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay----- 159 (479)
.++.++...|++++|+..|++++.++|..... .......|...++.. +.+.|++..++..|+.+|
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a-L~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQA-LRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhcCH
Confidence 34678899999999999999999997753210 011222333322222 345555555555444432
Q ss_pred -------------------------------------HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHH
Q 011721 160 -------------------------------------LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 160 -------------------------------------~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEA 201 (479)
...|++++|+.+|+++++++|+++..+. ||.+|..+|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 2356666666666666666666665544 66666666666666
Q ss_pred HH-HHHHHHhcCCCcc
Q 011721 202 KS-LLQAVRASSRNEK 216 (479)
Q Consensus 202 i~-l~kAL~l~P~n~~ 216 (479)
+. +.+++..+|+++.
T Consensus 515 ~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 515 DALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHHcCCCCHH
Confidence 66 5556666665544
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=1.5e-15 Score=174.93 Aligned_cols=232 Identities=12% Similarity=0.010 Sum_probs=170.4
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+..++...|.. ......+.+....|++++|+..|++++...|.. .++..+|.++.+.|++++|+.+|++++..+|.+.
T Consensus 499 ~~~Al~~~Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~ 576 (987)
T PRK09782 499 WLQAEQRQPDA-WQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN 576 (987)
T ss_pred HHHHHHhCCch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH
Confidence 45566777753 223334455567899999999999987775554 4678899999999999999999999999998875
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC--------CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG--------GKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~--------~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
.... .++..+...|++++|+..|+++++++|...... ......|....... +.++|+++.+++++|.++
T Consensus 577 ~l~~--~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~A-L~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 577 ALYW--WLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAA-LELEPNNSNYQAALGYAL 653 (987)
T ss_pred HHHH--HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH
Confidence 3322 233444566999999999999999988632111 11222333332222 678899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHH---HHHHHHHHHHHHH
Q 011721 160 LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESY---AKSFEHASLMLTE 234 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~---~k~~~rA~eaL~e 234 (479)
..+|++++|+.+|++|++++|+++.++. ||.+|..+|++++|+. +.+++.++|+++.+.+.. ...-.....+++.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 9999999999999999 899999999887754321 1111224444555
Q ss_pred HHhhhhcCCC
Q 011721 235 LESQSMLQPT 244 (479)
Q Consensus 235 l~~a~~~~P~ 244 (479)
+......+|.
T Consensus 734 ~~r~~~~~~~ 743 (987)
T PRK09782 734 VGRRWTFSFD 743 (987)
T ss_pred HHHHhhcCcc
Confidence 5555555665
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.72 E-value=2.8e-15 Score=164.49 Aligned_cols=229 Identities=19% Similarity=0.160 Sum_probs=140.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV 94 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a 94 (479)
.|.....+...+.++...|++++|+..|.+++..+|++..++..++.++...|++++|+..++.+....|.++.. ...
T Consensus 631 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~ 708 (899)
T TIGR02917 631 QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG--FEL 708 (899)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHH--HHH
Confidence 333333333444444444444444444444444444444444444444444444444444444444444444322 223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhc--------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIAC--------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~--------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
++.+|...|++++|+..|++++...|..... .......|....... +...|++..+++.+|.+|..+|+++
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAW-LKTHPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 4567777777888888887777776543110 001112222211111 4567888889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHHhhhhc
Q 011721 167 SAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELESQSML 241 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~ 241 (479)
+|+.+|+++++.+|+++..++ ||.++...|+ .+|+. +.+++.+.|++...... .....++..+++..+++++..
T Consensus 788 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 788 KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999988887 9999999999 88999 88899999888664221 122335566666677777777
Q ss_pred CCCChh
Q 011721 242 QPTDYG 247 (479)
Q Consensus 242 ~P~~~~ 247 (479)
+|.+..
T Consensus 867 ~~~~~~ 872 (899)
T TIGR02917 867 APEAAA 872 (899)
T ss_pred CCCChH
Confidence 887655
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.71 E-value=2.6e-15 Score=153.69 Aligned_cols=209 Identities=14% Similarity=0.108 Sum_probs=147.6
Q ss_pred CccchHH-HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 011721 1 MRWKDEE-LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF 79 (479)
Q Consensus 1 ~~~~~~~-~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~leka 79 (479)
|||+-++ .++...+.. .-|.. +..++..+++++|+..|.+++..+|++..++..+|.++...|++++|+..++++
T Consensus 20 ~~~~~~~~~~~~~~~~~---~~y~~-g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 95 (389)
T PRK11788 20 GRRSARQDQQKESNRLS---RDYFK-GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNL 95 (389)
T ss_pred Hhchhhhhhhhhhhhcc---HHHHH-HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 4676554 665554433 34444 456778899999999999999999999889999999999999999999999988
Q ss_pred HHhcCCChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhH
Q 011721 80 RCLCADDSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQEL 148 (479)
Q Consensus 80 l~l~P~da~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~ 148 (479)
+...+.... ......++.+|...|++++|+..|+++++..|..... .......|....... +...|.+
T Consensus 96 l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~ 174 (389)
T PRK11788 96 LSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL-EKLGGDS 174 (389)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH-HHhcCCc
Confidence 875332221 2234556789999999999999999999875542210 011222232222211 2222322
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 149 -----SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 149 -----~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
..++..+|.++..+|++++|+.+|+++++++|++..++. ||.+|...|++++|+. +.+++..+|.+
T Consensus 175 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 175 LRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 235667888888888888888888888888888777666 8888888888888888 77777777764
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.70 E-value=2.3e-15 Score=176.77 Aligned_cols=230 Identities=14% Similarity=0.096 Sum_probs=173.0
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH------------------------
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVV------------------------ 62 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~v------------------------ 62 (479)
.+.+++...|.....+...+.+++..|++++|+.+|+++++.+|++..++..++.+
T Consensus 373 ~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 373 LYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 35566777787777777788899999999999999999999999877766555443
Q ss_pred ------------------HHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh
Q 011721 63 ------------------MKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA 124 (479)
Q Consensus 63 ------------------L~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la 124 (479)
+...|++++|++.|++++.++|+++... ..++.+|..+|++++|+..|++++++.|....
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~--~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLT--YRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 4567999999999999999999987654 44678899999999999999999998775321
Q ss_pred c--------C-CCchHHHHhhc-----------------------------------hhHH----HhhhhhHHHHHHHHH
Q 011721 125 C--------G-GKSTKIARSQG-----------------------------------RKTQ----ITLVQELSRISGNLA 156 (479)
Q Consensus 125 ~--------~-~k~~~~A~~~g-----------------------------------~k~~----l~L~pe~~~al~nLG 156 (479)
. . ......|..+. +... +...|+++.++.+||
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La 610 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence 0 0 01111111110 0000 334577778899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----H--HHHHHHHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE----S--YAKSFEHA 228 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~----~--~~k~~~rA 228 (479)
.+|.++|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++...|++..+.. . ....+++|
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999887 9999999999999999 8888888888765422 1 12334555
Q ss_pred HHHHHHHHhh
Q 011721 229 SLMLTELESQ 238 (479)
Q Consensus 229 ~eaL~el~~a 238 (479)
.+++..+...
T Consensus 691 ~~~~~~al~~ 700 (1157)
T PRK11447 691 QRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHhhh
Confidence 5555554443
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.70 E-value=8.4e-15 Score=149.89 Aligned_cols=239 Identities=17% Similarity=0.099 Sum_probs=176.4
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRC 81 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~----~~Al~~LA~vL~~~GrydEAie~lekal~ 81 (479)
+.+.+++...|.....+...+.++...|++++|+..+.+++...+.. ..++..+|.+|...|++++|+..|++++.
T Consensus 56 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 56 DLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 35667777778776677778888899999999999999988754332 24678899999999999999999999998
Q ss_pred hcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh--------------cCCCchHHHHhhchhHHHhhhhh
Q 011721 82 LCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA--------------CGGKSTKIARSQGRKTQITLVQE 147 (479)
Q Consensus 82 l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la--------------~~~k~~~~A~~~g~k~~l~L~pe 147 (479)
..|.+... ...++.+|...|++++|++.|+++++..|.... ........|.....+. +.+.|+
T Consensus 136 ~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~ 212 (389)
T PRK11788 136 EGDFAEGA--LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA-LAADPQ 212 (389)
T ss_pred CCcchHHH--HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhHCcC
Confidence 88876543 345678899999999999999999987654210 0112223333333222 456777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH--HHH
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE--SYA 222 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~--~~~ 222 (479)
...++..+|.+|...|++++|+.+|+++++++|++. ..++ |+.+|...|++++|+. +.+++...|+...... ...
T Consensus 213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~ 292 (389)
T PRK11788 213 CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLL 292 (389)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 788999999999999999999999999999999875 4566 9999999999999999 8888999887643211 111
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 223 KSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 223 k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
...++..+++..++..+...|++..
T Consensus 293 ~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 2223444555555556666787543
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.69 E-value=3.5e-15 Score=171.95 Aligned_cols=223 Identities=11% Similarity=0.023 Sum_probs=177.7
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011721 18 GDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97 (479)
Q Consensus 18 ~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~ 97 (479)
....+...+.++.. +++++|+..|.+++...|+.. .+..+|.++...|++++|+..|++++...|.+. .. ..++.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~--~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DL--LAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HH--HHHHH
Confidence 45566777766664 899999999999999888754 466778888999999999999999877766643 22 34567
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcC------C---CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACG------G---KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESA 168 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~------~---k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA 168 (479)
++...|++++|+.+|++++.+.|...... . .....|..+.... +.+.|+ ..++.++|.++.++|++++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A-L~l~P~-~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRS-LNIAPS-ANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 89999999999999999999976543211 0 2233444333333 577886 88999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHHhhhhcCC
Q 011721 169 ERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 169 ~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~~P 243 (479)
+.+|+++++++|+++.+++ ||.+|..+|++++|+. +.+++.++|+++.+... .....++..+++..+++++.++|
T Consensus 629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 629 VSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999887 9999999999999999 99999999999875332 23445667778888888888899
Q ss_pred CChh
Q 011721 244 TDYG 247 (479)
Q Consensus 244 ~~~~ 247 (479)
....
T Consensus 709 ~~a~ 712 (987)
T PRK09782 709 NQAL 712 (987)
T ss_pred CCch
Confidence 7653
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=7.1e-15 Score=135.48 Aligned_cols=175 Identities=13% Similarity=0.034 Sum_probs=149.0
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++...|.+..++.++|.++...|++++|+..|++++...+..
T Consensus 53 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 132 (234)
T TIGR02521 53 NLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP 132 (234)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 34556777788777878888899999999999999999999999999999999999999999999999999998764322
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
........++.+|...|++++|+..|.+++...|. +..++..+|.++...|+++
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--------------------------RPESLLELAELYYLRGQYK 186 (234)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--------------------------ChHHHHHHHHHHHHcCCHH
Confidence 12223344678999999999999999999988554 2347889999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 011721 167 SAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQA 207 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kA 207 (479)
+|+.++++++.+.|+++..+. ++.++...|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999998887776 99999999999999995443
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=6.3e-15 Score=148.65 Aligned_cols=202 Identities=13% Similarity=-0.014 Sum_probs=152.0
Q ss_pred HHHHHHHhhCCCCC----cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 011721 6 EELFHVIHKVPAGD----SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC 81 (479)
Q Consensus 6 ~~~~~~v~k~p~~~----~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~ 81 (479)
.++..++.+.|-.+ ..|...+.++...|++++|+..|.++++.+|++..+++.+|.++...|++++|++.|+++++
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35567776655443 34667778888999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh--------cCCCchHHHHhhchhHHHhhhhhHHHHHH
Q 011721 82 LCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA--------CGGKSTKIARSQGRKTQITLVQELSRISG 153 (479)
Q Consensus 82 l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la--------~~~k~~~~A~~~g~k~~l~L~pe~~~al~ 153 (479)
++|++.....+ +|.+|...|++++|+..|+++++++|.... ........|........ ...++..+.
T Consensus 127 l~P~~~~a~~~--lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~---~~~~~~~~~ 201 (296)
T PRK11189 127 LDPTYNYAYLN--RGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY---EKLDKEQWG 201 (296)
T ss_pred hCCCCHHHHHH--HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH---hhCCccccH
Confidence 99998776544 567899999999999999999999886421 01122233333322211 111122232
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH-------HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 154 NLAWAYLQQNDYESAERYYMKA-------LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 154 nLG~ay~~lGdydeA~~~yrKA-------LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.+.++..+|++.++ ..+..+ ++++|+...++. ||.+|..+|++++|+. +.+++.++|.+
T Consensus 202 -~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 202 -WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 46777778887554 233333 366777777777 9999999999999999 89999999854
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.69 E-value=1.1e-14 Score=159.88 Aligned_cols=226 Identities=20% Similarity=0.146 Sum_probs=163.9
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
.++...|.....+...+.++...|++++|+.+|.+++..+|++..++..+|.++...|++++|++.|++++..+|.+...
T Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred HHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 34455566666667777788888888888888888888888888888888888888888888888888888888887654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
. ..++.+|...|++++|+..|++++...|..... .......|....... +...|.+..++..+|.+|.
T Consensus 536 ~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 536 I--LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA-ADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred H--HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 3 345677888888888888888888877653210 011222332222221 3455777788889999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH------HHHHHHHHHHHHH
Q 011721 161 QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE------SYAKSFEHASLML 232 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~------~~~k~~~rA~eaL 232 (479)
..|++++|+.+|+++++++|+++..+. +|.+|...|++++|+. +.+++..+|++..... ...+.++.|..++
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999998887777 8999999999999999 8888888888755321 1123445555555
Q ss_pred HHHHhh
Q 011721 233 TELESQ 238 (479)
Q Consensus 233 ~el~~a 238 (479)
..+...
T Consensus 693 ~~~~~~ 698 (899)
T TIGR02917 693 KSLQKQ 698 (899)
T ss_pred HHHHhh
Confidence 555444
No 19
>PRK12370 invasion protein regulator; Provisional
Probab=99.68 E-value=1.5e-15 Score=165.57 Aligned_cols=185 Identities=12% Similarity=-0.006 Sum_probs=147.0
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---------CChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~---------GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
+++++|+.+|++|++++|++..++..+|.+|... +++++|+..++++++++|+++.++. .++.++...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~--~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALG--LLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHcc
Confidence 4578999999999999999999999999887633 4589999999999999999987654 4567899999
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
++++|+..|++|++++|. ++.+++++|.+|..+|++++|+.+|++|++++|+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~--------------------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI--------------------------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred CHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999998554 445899999999999999999999999999999998
Q ss_pred HHHH-HHHHHHHcCCHHHHHH-HHHHHHhc-CCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCC
Q 011721 184 KQCN-LAICLIRLNRIAEAKS-LLQAVRAS-SRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTD 245 (479)
Q Consensus 184 ~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~-P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~ 245 (479)
..+. ++.++..+|++++|+. +.+++... |+++.... ......++..++...+.+..+..|..
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 7655 6777888999999999 88888775 55554221 11222234444444444445555653
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.6e-16 Score=165.98 Aligned_cols=218 Identities=18% Similarity=0.125 Sum_probs=158.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC-------------------------
Q 011721 30 LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA------------------------- 84 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P------------------------- 84 (479)
+..-+..+|+..|.+.-...++....+..+|..|+++++|++|..+|+.+..+.|
T Consensus 330 ~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 4445667788888773344555566777788888888888888888776655444
Q ss_pred ---------CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH-h--cCC------CchHHHHhhchhHHHhhhh
Q 011721 85 ---------DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI-A--CGG------KSTKIARSQGRKTQITLVQ 146 (479)
Q Consensus 85 ---------~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~l-a--~~~------k~~~~A~~~g~k~~l~L~p 146 (479)
+.++.+ .++|++|.-+++++.||.+|++|+.++|... + +.| ...+.|...++++ +.++|
T Consensus 410 aq~Li~~~~~sPesW--ca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-l~~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESW--CALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-LGVDP 486 (638)
T ss_pred HHHHHhhCCCCcHHH--HHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh-hcCCc
Confidence 334433 4677888888999999999999998888532 1 111 1122333333333 56788
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HH
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SY 221 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~ 221 (479)
.+-.||+.||.+|+++++++.|+-+|++|++|+|.+....- +|.++.++|+.++|+. +.+|+.++|.|+..-. ..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 88899999999999999999999999999999999987655 9999999999999999 9999999999976422 22
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChhhHH
Q 011721 222 AKSFEHASLMLTELESQSMLQPTDYGEDK 250 (479)
Q Consensus 222 ~k~~~rA~eaL~el~~a~~~~P~~~~~~~ 250 (479)
+..+.+-.++|.+|+.-..+.|++..+.+
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~ 595 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFA 595 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHH
Confidence 34445555666666666666787555333
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=8e-16 Score=165.81 Aligned_cols=206 Identities=17% Similarity=0.133 Sum_probs=172.5
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
.+.-.|..+-.....|..+-.++|.+.|+.+|++||.++|++.-||..+|.-+.....||.|..+|+.++..+|++-.++
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 34556666666667777788899999999999999999999999999999999999999999999999999999976665
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
+ +||.+|.++++++.|+-+|++|+.++|.... ++..+|.++.++|+.++|+.
T Consensus 493 Y--GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv--------------------------i~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 493 Y--GLGTVYLKQEKLEFAEFHFQKAVEINPSNSV--------------------------ILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred H--hhhhheeccchhhHHHHHHHhhhcCCccchh--------------------------HHhhhhHHHHHhhhhhHHHH
Confidence 5 4678999999999999999999999877543 67889999999999999999
Q ss_pred HHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHH---HHHHHHHHHHHHHHHhhhhcCCC
Q 011721 171 YYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESY---AKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 171 ~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~---~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
+|++|+.++|.++-... .|.+|..+++++||+. +++.-++.|++....... -+.++....++.++-=+..++|.
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999986654 9999999999999999 777778888876532221 24455666777777777777774
No 22
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.63 E-value=5.1e-14 Score=136.64 Aligned_cols=164 Identities=19% Similarity=0.140 Sum_probs=142.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~kl 102 (479)
+.++.-++..||+..|...+++||+.+|++..++..+|.+|...|..+.|-+.|++++.++|++.+...+ .|..++.+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN--YG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN--YGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh--hhHHHHhC
Confidence 3445567899999999999999999999999999999999999999999999999999999999875433 46778899
Q ss_pred CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 103 KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
|++++|...|++|+.. |. -++.+..+-|+|.+.+++|+++.|.++|+++|+++|++
T Consensus 117 g~~~eA~q~F~~Al~~-P~-----------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 117 GRPEEAMQQFERALAD-PA-----------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred CChHHHHHHHHHHHhC-CC-----------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 9999999999999975 11 12334589999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 183 NKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 183 a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
+.... |+..++..|+|-.|.. +.+-...-+
T Consensus 173 ~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 173 PPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred ChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 98877 9999999999999999 444444333
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.60 E-value=1.4e-13 Score=138.85 Aligned_cols=179 Identities=17% Similarity=0.120 Sum_probs=139.2
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
.++.+++...|.....|...+.++...|++++|+..|.++++++|++..++.++|.++...|++++|++.|++++.++|+
T Consensus 85 ~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 85 NDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 45778888899888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-hhH----Hh--cCCCch-HHHHhhch---hHHHhhhhhHHHHHHH
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT-EEV----IA--CGGKST-KIARSQGR---KTQITLVQELSRISGN 154 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~-p~~----la--~~~k~~-~~A~~~g~---k~~l~L~pe~~~al~n 154 (479)
++...+ ...++...+++++|+..|.+++... +.. .. ..+... ..+..... ...+.+.|...++|++
T Consensus 165 ~~~~~~---~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~ 241 (296)
T PRK11189 165 DPYRAL---WLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFY 241 (296)
T ss_pred CHHHHH---HHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 874222 1234567889999999998877653 221 10 011111 11111110 1113567778899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHH
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLES-DKNKQCN 187 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdP-dna~a~n 187 (479)
||.+|.++|++++|+.+|++|++++| ++..+..
T Consensus 242 Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 242 LAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 99999999999999999999999997 5555543
No 24
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.7e-14 Score=148.97 Aligned_cols=205 Identities=19% Similarity=0.132 Sum_probs=170.5
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
++|..-|..+.+..-.+-.++.-+.+.+|..+|-||..++|.+..++...|..+...|..|+|+.+|..|-++.|.--..
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP 382 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP 382 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence 56888999999988888778888999999999999999999999999999999999999999999999999999875333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHH---hhhhhH---HHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQI---TLVQEL---SRISGN 154 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l---~L~pe~---~~al~n 154 (479)
.+ .+|.-|.+.+.+.-|..+|.+|+.+.|..... ..+....|...+....+ ++.++. ...+.|
T Consensus 383 ~L--Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 383 SL--YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred HH--HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 33 35567999999999999999999999865321 11223355544444321 122222 245899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
||.+|.+++.|++|+.+|++||.+.|.++.++. +|.+|..+|+++.|+. +-+||.++|+|.-
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999999999999999999999999999999988 9999999999999999 9999999998844
No 25
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=6.3e-14 Score=149.49 Aligned_cols=196 Identities=16% Similarity=0.189 Sum_probs=162.7
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
..||..++ .++..|+..+|+-+|+.|++.+|.+.+|+..||++....++=..||.+++++++++|++-++.+ +|+..
T Consensus 286 pdPf~eG~-~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLm--aLAVS 362 (579)
T KOG1125|consen 286 PDPFKEGC-NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALM--ALAVS 362 (579)
T ss_pred CChHHHHH-HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHH--HHHHH
Confidence 56887775 6888999999999999999999999999999999999999999999999999999999977654 46788
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCC----Cc-------h---HHHHhhchhHH-Hhhhh--hHHHHHHHHHHHHHH
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGG----KS-------T---KIARSQGRKTQ-ITLVQ--ELSRISGNLAWAYLQ 161 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~----k~-------~---~~A~~~g~k~~-l~L~p--e~~~al~nLG~ay~~ 161 (479)
|...|.-.+|+.+|.+=|...|.-..... .. . ..+...-.... ....| .+++++.-||.+|..
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 99999999999999999988765321110 00 0 00000000000 12234 567899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 162 QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 162 lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
.|+|+.|+.||+.||..+|+|...+| ||..|..-.+.+||+. |.+||.+.|..+.+
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~ 500 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRV 500 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeee
Confidence 99999999999999999999999999 9999999999999999 99999999998775
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=6.3e-14 Score=147.17 Aligned_cols=209 Identities=19% Similarity=0.178 Sum_probs=157.3
Q ss_pred hHHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 5 DEELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 5 ~~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
..|+-++|.-.|...++|++.+.+++...+.++-...|.+|..++|.+++.|+..|.++.-+++|++|+.-|++++.++|
T Consensus 346 ~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 35777788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
+++..++.. +.+..++++++++...|+.+++..|.. ++++...|.++..+++
T Consensus 426 e~~~~~iQl--~~a~Yr~~k~~~~m~~Fee~kkkFP~~--------------------------~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 426 ENAYAYIQL--CCALYRQHKIAESMKTFEEAKKKFPNC--------------------------PEVYNLFAEILTDQQQ 477 (606)
T ss_pred hhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCC--------------------------chHHHHHHHHHhhHHh
Confidence 887655543 345667788888888888888876653 3578888889999999
Q ss_pred HHHHHHHHHHHHHcCCC------CHHHHH-HHHH-HHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHH
Q 011721 165 YESAERYYMKALSLESD------KNKQCN-LAIC-LIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLML 232 (479)
Q Consensus 165 ydeA~~~yrKALeLdPd------na~a~n-LG~~-L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL 232 (479)
|++|++.|.+|++|.|. ++..+. -|.+ +.-.+++.+|+. +.+|++++|....+.. ...-..++..+++
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999988 444332 3332 234588899999 8888999987655432 1122335556666
Q ss_pred HHHHhhhhc
Q 011721 233 TELESQSML 241 (479)
Q Consensus 233 ~el~~a~~~ 241 (479)
.-|++..-+
T Consensus 558 elFEksa~l 566 (606)
T KOG0547|consen 558 ELFEKSAQL 566 (606)
T ss_pred HHHHHHHHH
Confidence 666655433
No 27
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.58 E-value=3.9e-14 Score=128.69 Aligned_cols=124 Identities=7% Similarity=-0.042 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 39 ISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 39 i~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
..+|.+++.++|+. +..+|.++...|++++|+..|++++.++|.+...+. .+|.++..+|++++|+..|++++.+
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~--~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHI--ALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH--HHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35777888887764 556788888888888888888888888887654432 3445666666666666666666665
Q ss_pred chhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHH
Q 011721 119 TEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLI 193 (479)
Q Consensus 119 ~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~ 193 (479)
+| +++.+++++|.+|..+|++++|+..|++|++++|+++..+. +|.+..
T Consensus 88 ~p--------------------------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DA--------------------------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CC--------------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 23346666666666666666666666666666666665554 555443
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.57 E-value=3.3e-13 Score=152.50 Aligned_cols=223 Identities=13% Similarity=0.056 Sum_probs=163.8
Q ss_pred HHHHhhCCCCCcHHHHH----HHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 9 FHVIHKVPAGDSPYVRA----KRAQLVEKDPSRAISLFWAAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 9 ~~~v~k~p~~~~pyv~a----~~~~L~~gd~eeAi~~y~kAL~l~p~~-~~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
.....+.|....-+..+ ..+.+..+++++|+..|+++++.++.. ..+...+|.+|..+|++++|+.+|++++..+
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 33445667654433332 224567799999999999999876432 2344557999999999999999999999988
Q ss_pred CCChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH---HhcCCCchHHHHhhchhHHHhhhhh--HHHHHHHHH
Q 011721 84 ADDSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV---IACGGKSTKIARSQGRKTQITLVQE--LSRISGNLA 156 (479)
Q Consensus 84 P~da~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~---la~~~k~~~~A~~~g~k~~l~L~pe--~~~al~nLG 156 (479)
|.++. ......|+.+|..+|++++|+..+++++...|.. ..... ..|+ ...++..+|
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~----------------~~p~~~~~~a~~~~a 366 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT----------------SIPNDDWLQGQSLLS 366 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC----------------CCCCchHHHHHHHHH
Confidence 87621 1112234456899999999999999999988742 11100 0122 234778999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH------HHHHHHHHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE------SYAKSFEHA 228 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~------~~~k~~~rA 228 (479)
.++...|++++|+..|++++...|++...+. +|.++...|++++|+. +.+++.++|++..... .....+++|
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999999999998887 9999999999999999 8999999999865322 123456777
Q ss_pred HHHHHHHHhhhhcCCCChh
Q 011721 229 SLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 229 ~eaL~el~~a~~~~P~~~~ 247 (479)
..++..+.+..+.+|..+.
T Consensus 447 ~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 447 DVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 7777776666555554333
No 29
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.55 E-value=5.1e-13 Score=128.44 Aligned_cols=183 Identities=16% Similarity=0.085 Sum_probs=142.0
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH-HHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVD---SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES-LDNVL 95 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~---~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~-l~~aL 95 (479)
..+...+..++..|++++|+..|.+++...|+.. .+++.+|.+|...|++++|+..|++++..+|+++... ..+.+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 3455666778889999999999999999888754 6789999999999999999999999999999876531 12335
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 96 LELYKRS--------KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 96 g~lY~kl--------Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
+.+|... |++++|+..|++++..+|..... ..+.... ..+..........+|.+|..+|++.+
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~a~~~~----~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA-----PDAKKRM----DYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH-----HHHHHHH----HHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 6677765 88999999999999998874321 0111000 01111222345689999999999999
Q ss_pred HHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHHHHHHHHhc
Q 011721 168 AERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKSLLQAVRAS 211 (479)
Q Consensus 168 A~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~l~kAL~l~ 211 (479)
|+..|++++...|+++ .++. +|.++..+|++++|+.+.+.+..+
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999988764 5666 999999999999999966666544
No 30
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.4e-13 Score=142.88 Aligned_cols=213 Identities=13% Similarity=0.118 Sum_probs=169.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
++.+++.-.|++++.|...+++.+..+++++|+.-|.+++.++|.+.-++..++.++.++++++++...|+.++...|+-
T Consensus 382 ~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~ 461 (606)
T KOG0547|consen 382 DFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC 461 (606)
T ss_pred HHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67778888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH-HHHcCCH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA-YLQQNDY 165 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a-y~~lGdy 165 (479)
++.. +..+.++..++++++|++.|.+|+.+.|......- ++..+.+-|.+ +.=.+++
T Consensus 462 ~Evy--~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v--------------------~~~plV~Ka~l~~qwk~d~ 519 (606)
T KOG0547|consen 462 PEVY--NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV--------------------NAAPLVHKALLVLQWKEDI 519 (606)
T ss_pred chHH--HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc--------------------cchhhhhhhHhhhchhhhH
Confidence 7653 34568899999999999999999999876221000 00012222222 1233899
Q ss_pred HHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhhhhcCC
Q 011721 166 ESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 166 deA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a~~~~P 243 (479)
..|+.+++||+++||....++. ||.+.+++|+.++|+. +.+++.+...-. .-.+.-+|..|..+-..+.+++.+.+
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~--E~~~a~s~aeAAraq~~vtkK~~~~~ 597 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES--EMVHAYSLAEAARAQIAVTKKYGLTL 597 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHhhhHHHHHHhcccH
Confidence 9999999999999999999998 9999999999999999 888887764321 11344555565555555555655444
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.6e-13 Score=140.87 Aligned_cols=199 Identities=21% Similarity=0.173 Sum_probs=161.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHH
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deA 108 (479)
+-..++.++|+.+|++|++++|+...++..||.-|....+...|++.|+.|+.++|.|-.+++ +||..|.-++.+.=|
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWY--GLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWY--GLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHh--hhhHHHHHhcchHHH
Confidence 445678899999999999999999999999999999999999999999999999999876665 477899999999999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN- 187 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n- 187 (479)
+-+|++|+.. .|.+...|..||.+|.++++.++|+++|.+|+...-.+..++.
T Consensus 418 LyYfqkA~~~--------------------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 418 LYYFQKALEL--------------------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred HHHHHHHHhc--------------------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 9999999987 4667789999999999999999999999999999988888888
Q ss_pred HHHHHHHcCCHHHHHH-HHHHHHhc-------CCCccchH---HH---HHHHHHHHHHHHHHHhhhhcCCCChhhHHHHH
Q 011721 188 LAICLIRLNRIAEAKS-LLQAVRAS-------SRNEKMDE---SY---AKSFEHASLMLTELESQSMLQPTDYGEDKRKK 253 (479)
Q Consensus 188 LG~~L~~lGr~dEAi~-l~kAL~l~-------P~n~~a~~---~~---~k~~~rA~eaL~el~~a~~~~P~~~~~~~~~~ 253 (479)
||.+|-++++..+|.. +.+-+... |+-.++-. .+ .+.|++|.......... +++.+....
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------~~e~eeak~ 545 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------ETECEEAKA 545 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------CchHHHHHH
Confidence 9999999999999999 88877643 21111100 11 24456665554443322 333556667
Q ss_pred hhhhhhhh
Q 011721 254 ILSSCTYI 261 (479)
Q Consensus 254 ~~~~~~~i 261 (479)
++..+.++
T Consensus 546 LlReir~~ 553 (559)
T KOG1155|consen 546 LLREIRKI 553 (559)
T ss_pred HHHHHHHh
Confidence 77777653
No 32
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=8e-14 Score=148.72 Aligned_cols=181 Identities=18% Similarity=0.185 Sum_probs=157.2
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC-
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD- 86 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d- 86 (479)
++-+|++.|........+|.++...++-..||..++++++++|++..++..||+.|...|.-.+|..+|.+-+...|..
T Consensus 308 fEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~ 387 (579)
T KOG1125|consen 308 FEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYV 387 (579)
T ss_pred HHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccch
Confidence 3455999999999999999999988889999999999999999999999999999999999999999998865543311
Q ss_pred ----------------------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC
Q 011721 87 ----------------------------------------SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG 126 (479)
Q Consensus 87 ----------------------------------------a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~ 126 (479)
.+..+..+||.+|.-.|.|+.|+.+|+.||...
T Consensus 388 ~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~------- 460 (579)
T KOG1125|consen 388 HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK------- 460 (579)
T ss_pred hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-------
Confidence 112244567788999999999999999998874
Q ss_pred CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHcCCHHHHHH-H
Q 011721 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ-CNLAICLIRLNRIAEAKS-L 204 (479)
Q Consensus 127 ~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a-~nLG~~L~~lGr~dEAi~-l 204 (479)
|++...|+.||-.+..-.+.++|+..|++||+|.|.+..+ ||||++++.+|.|+||+. +
T Consensus 461 -------------------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 461 -------------------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred -------------------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 4455699999999999999999999999999999999976 569999999999999999 9
Q ss_pred HHHHHhcCCC
Q 011721 205 LQAVRASSRN 214 (479)
Q Consensus 205 ~kAL~l~P~n 214 (479)
+.||.+.+.+
T Consensus 522 L~AL~mq~ks 531 (579)
T KOG1125|consen 522 LEALSMQRKS 531 (579)
T ss_pred HHHHHhhhcc
Confidence 9999988774
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.53 E-value=1.2e-12 Score=147.94 Aligned_cols=188 Identities=13% Similarity=0.004 Sum_probs=139.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~~----~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
+..+.+++..|++++|+.+|++++..+|.. ......|+.++.++|++++|+..++++....|...... +..
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~-----~~~ 350 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLY-----GSP 350 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeec-----CCC
Confidence 335678899999999999999999887765 35677888899999999999999999999988753210 000
Q ss_pred HHHcC--CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 99 YKRSK--RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 99 Y~klG--r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
...- .+.++...+-.++.. ......|....... +...|++..++..+|.++...|++++|+..|++|+
T Consensus 351 -~~~p~~~~~~a~~~~a~~l~~--------~g~~~eA~~~l~~a-l~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 351 -TSIPNDDWLQGQSLLSQVAKY--------SNDLPQAEMRAREL-AYNAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred -CCCCCchHHHHHHHHHHHHHH--------cCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0000 111222222222221 12233444433332 56789999999999999999999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHH
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASL 230 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~e 230 (479)
+++|++...+. +|.+++.+|++++|.. +.+.++..|+++. ...++++.+
T Consensus 421 ~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~-----~~~~~~~~~ 471 (765)
T PRK10049 421 VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG-----VQRLARARD 471 (765)
T ss_pred hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHH
Confidence 99999998877 9999999999999999 8899999999875 344555544
No 34
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.53 E-value=2.4e-13 Score=123.49 Aligned_cols=113 Identities=13% Similarity=0.129 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHH
Q 011721 73 IEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRIS 152 (479)
Q Consensus 73 ie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al 152 (479)
..+|++++.++|++. ..++.++...|++++|+.+|++++.++| .+..++
T Consensus 13 ~~~~~~al~~~p~~~-----~~~g~~~~~~g~~~~A~~~~~~al~~~P--------------------------~~~~a~ 61 (144)
T PRK15359 13 EDILKQLLSVDPETV-----YASGYASWQEGDYSRAVIDFSWLVMAQP--------------------------WSWRAH 61 (144)
T ss_pred HHHHHHHHHcCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------------------CcHHHH
Confidence 357899999999752 2356788999999999999999998854 445699
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++|.++..+|++++|+.+|++|++++|+++.++. +|.+|..+|++++|+. +.+++.+.|+++.
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999999999999998877 9999999999999999 9999999999865
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.53 E-value=7.3e-13 Score=148.02 Aligned_cols=173 Identities=14% Similarity=0.065 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 36 SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRK 115 (479)
Q Consensus 36 eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekA 115 (479)
.+++.........-|++.+++.+||.+..+.|++++|+..++.+++++|++..+..++ +.++.+++++++|+..++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~--a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILM--LRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHH--HHHHHHhccHHHHHHHHHHH
Confidence 3334333333445677889999999999999999999999999999999998877654 57899999999999999999
Q ss_pred HHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH
Q 011721 116 LKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIR 194 (479)
Q Consensus 116 Lkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~ 194 (479)
+... |+++.+++++|.++.++|+|++|+.+|+++++.+|+++.++. +|.+|..
T Consensus 147 l~~~--------------------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 147 FSGG--------------------------SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred hhcC--------------------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9884 445569999999999999999999999999999999999887 9999999
Q ss_pred cCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHH
Q 011721 195 LNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELE 236 (479)
Q Consensus 195 lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~ 236 (479)
+|+.++|.. |.+++.......+.....+..+..-..+|+.++
T Consensus 201 ~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (694)
T PRK15179 201 RGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALRRLG 243 (694)
T ss_pred cCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999 999998876554422223333333444444443
No 36
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.49 E-value=3.8e-12 Score=121.83 Aligned_cols=151 Identities=14% Similarity=0.080 Sum_probs=122.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
-.|+.-|+++.......+... |.. -+...++.++++..+++++..+|+++..++. ||.+|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~--~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~--Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD--PLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWAL--LGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC--ccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHCCCHH
Confidence 457777888776554422211 110 1223778899999999999999999876654 678999999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHcCCCCH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAY-LQQND--YESAERYYMKALSLESDKN 183 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay-~~lGd--ydeA~~~yrKALeLdPdna 183 (479)
+|+..|++|+++.| +++.++.++|.++ ...|+ +++|+..|+++++++|+++
T Consensus 91 ~A~~a~~~Al~l~P--------------------------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 91 NALLAYRQALQLRG--------------------------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred HHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence 99999999999854 4556899999975 78788 5999999999999999999
Q ss_pred HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 184 KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 184 ~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.++. ||.++..+|++++|+. +.+++.++|.+..
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9887 9999999999999999 8899999987654
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=2.1e-13 Score=135.14 Aligned_cols=203 Identities=24% Similarity=0.201 Sum_probs=94.5
Q ss_pred CCCcHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011721 17 AGDSPYV-RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVL 95 (479)
Q Consensus 17 ~~~~pyv-~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aL 95 (479)
.++.-|. ..+.+....++++.|+..|++.+..++..+..+..++.+ ...+++++|+.+++++....++. .. + ..+
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-~~-l-~~~ 116 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-RY-L-LSA 116 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc-ch-h-hHH
Confidence 3343443 355667778999999999999999988888888888888 79999999999999887766542 22 2 234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+.+|...|+++++...++++....+ .+.++.++..+|.++.+.|++++|+.+|++|
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPA------------------------APDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---------------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccC------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678999999999999999875311 1234568899999999999999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++++|+++...+ |+.+++..|+++++.. +.......|.++.... .....+++..++|..+++.+..+|+|+.
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 999999999888 9999999999999888 5555555566655422 1224456777777778888888999887
No 38
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.7e-12 Score=134.42 Aligned_cols=232 Identities=14% Similarity=0.139 Sum_probs=171.7
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-H-HHHHH--
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-E-SLDNV-- 94 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~-~l~~a-- 94 (479)
..++..++.+.+...+++.|+..|.+++.++ .+...+.+.+.+|...|.+.+.+..+..+++..-.... . .+...
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 4577788888999999999999999999999 77778899999999999999999998887765433211 0 01111
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC-chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 95 -LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK-STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 95 -Lg~lY~klGr~deAie~lekALkl~p~~la~~~k-~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
+|..|.+.|+++.|+.+|+++|.-.......... ....+...... ..-++|+...--..-|+.++..|+|.+|+.+|
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~-~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAER-KAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4568999999999999999999764331111110 00111111110 13456666666677799999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
.+||..+|+++..|- .|.||..+|.+.+|+. +..+++++|++..+.. ..+..+.+...++..+..++.++|...+
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 999999999998875 9999999999999999 9999999999877532 1223344444555666668888998666
Q ss_pred hHHHHHh
Q 011721 248 EDKRKKI 254 (479)
Q Consensus 248 ~~~~~~~ 254 (479)
++..+
T Consensus 462 --~~~~~ 466 (539)
T KOG0548|consen 462 --AIDGY 466 (539)
T ss_pred --HHHHH
Confidence 44443
No 39
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.47 E-value=1.9e-12 Score=123.89 Aligned_cols=126 Identities=16% Similarity=0.165 Sum_probs=112.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHcCC--HHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL-YKRSKR--IEEE 108 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l-Y~klGr--~deA 108 (479)
.++.++++..+++++..+|++..++..||.+|...|++++|+.+|++++.++|+++..... ++.+ |...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~--lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAA--LATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCCCCcHHH
Confidence 4677999999999999999999999999999999999999999999999999999877654 4454 578888 5999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
+..|+++++++|. +..++++||.++.++|+|++|+.+|+++++++|.+...
T Consensus 130 ~~~l~~al~~dP~--------------------------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 130 REMIDKALALDAN--------------------------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHhCCC--------------------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999998554 44599999999999999999999999999999887643
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=1.7e-11 Score=128.98 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=37.5
Q ss_pred hhhhhHH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 011721 143 TLVQELS--RISGNLAWAYLQQNDYESAERYYM--KALSLESDKNKQCNLAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 143 ~L~pe~~--~al~nLG~ay~~lGdydeA~~~yr--KALeLdPdna~a~nLG~~L~~lGr~dEAi~-l~kAL 208 (479)
...|+++ .++..+|++++++|++++|.++|+ ++++++|++.....||.++.++|+.++|.. +.+++
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555 555566666666666666666666 355555655543346666666666666655 44443
No 41
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=4e-12 Score=137.15 Aligned_cols=180 Identities=22% Similarity=0.238 Sum_probs=144.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc---
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC--- 83 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~--- 83 (479)
.|.-.........++...|++++|+.+++.|+.. .+.....+..+|.+|..+++|++|+.+|++++.+-
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3433344445677888999999999999999986 55566667779999999999999999999988763
Q ss_pred --CCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 84 --ADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 84 --P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
++++. +...+-|+.+|.+.|++++|..++++|++|..+... ...++.+..+.+++.++.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~------------------~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG------------------ASHPEVAAQLSELAAILQ 336 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc------------------cChHHHHHHHHHHHHHHH
Confidence 44443 233344778999999999999999999999766322 123445568999999999
Q ss_pred HcCCHHHHHHHHHHHHHc-----CCCC---HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 161 QQNDYESAERYYMKALSL-----ESDK---NKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeL-----dPdn---a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
.++++++|+.+|++++++ .+++ +..++ ||.+|..+|+|+||.. +.+||....
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 999999999999999997 3455 24565 9999999999999999 888987764
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=1.2e-12 Score=129.85 Aligned_cols=196 Identities=22% Similarity=0.192 Sum_probs=77.9
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
+++...+.+..-+.+...+ +..+++++|+.++.++.+..+ .+..+..+..++...++++++...++++....+.....
T Consensus 69 ~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 69 KLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred ccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 3444455555555566655 688999999999998887554 34566677788999999999999999987655222223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
.+...++.+|.+.|+.++|+..|++||+++|..... .......+....... ....|.++.++..+|.+|.
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~-~~~~~~~~~~~~~la~~~~ 225 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRL-LKAAPDDPDLWDALAAAYL 225 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH-HHH-HTSCCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH-HHHCcCHHHHHHHHHHHhc
Confidence 344556789999999999999999999998764310 001111111110000 1112444556666666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 161 QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
.+|++++|+.+|++++..+|+|+.... +|.+|...|++++|.. ..+++
T Consensus 226 ~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 226 QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 666666666666666666666666554 6666666666666666 44443
No 43
>PLN02789 farnesyltranstransferase
Probab=99.45 E-value=1.5e-11 Score=126.26 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=138.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCH--
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRI-- 105 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G-rydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~-- 105 (479)
....+..++|+..+.++|.++|++..++...+.++..+| ++++|+..+.+++..+|++.+++.+. +.++.++|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R--~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR--RWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH--HHHHHHcCchhh
Confidence 445678999999999999999999999999999999999 68999999999999999998776544 3456677774
Q ss_pred HHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 106 EEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 106 deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
++++.++.++|.++|+ +..+|.++|+++..+|+|++|++++.++|+++|.|..+
T Consensus 125 ~~el~~~~kal~~dpk--------------------------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 125 NKELEFTRKILSLDAK--------------------------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 6788888888887554 44599999999999999999999999999999999999
Q ss_pred HH-HHHHHHHc---CCH----HHHHH-HHHHHHhcCCCccc
Q 011721 186 CN-LAICLIRL---NRI----AEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 186 ~n-LG~~L~~l---Gr~----dEAi~-l~kAL~l~P~n~~a 217 (479)
++ .+.++..+ |++ ++++. +.++|.++|+|..+
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~Sa 219 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESP 219 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCH
Confidence 98 99998876 333 46777 66999999999764
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=9.8e-12 Score=130.25 Aligned_cols=190 Identities=20% Similarity=0.195 Sum_probs=162.4
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l 91 (479)
++-.|.--+...--||-++..++...|+..|++|++++|.+-.|++.||..|.-.+...=|+=+|++++.+-|+|+..+
T Consensus 357 LkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw- 435 (559)
T KOG1155|consen 357 LKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLW- 435 (559)
T ss_pred HhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHH-
Confidence 4556655556556678889999999999999999999999999999999999999999999999999999999987544
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
.+||.+|.++++.++||.+|.+|+....- ...+|..||.+|.+++++.+|..+
T Consensus 436 -~aLG~CY~kl~~~~eAiKCykrai~~~dt--------------------------e~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 436 -VALGECYEKLNRLEEAIKCYKRAILLGDT--------------------------EGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred -HHHHHHHHHhccHHHHHHHHHHHHhcccc--------------------------chHHHHHHHHHHHHHHhHHHHHHH
Confidence 56889999999999999999999987221 224899999999999999999999
Q ss_pred HHHHHH-------cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhhhh
Q 011721 172 YMKALS-------LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSM 240 (479)
Q Consensus 172 yrKALe-------LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a~~ 240 (479)
|++-++ ++|....+.. |+..+.+.+++++|-. +.+.+.-++ ..++|..++.++++...
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~-----------e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET-----------ECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHHhcC
Confidence 999999 5566667776 9999999999999999 666665533 34788888998887754
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.43 E-value=1.2e-11 Score=118.90 Aligned_cols=166 Identities=11% Similarity=-0.009 Sum_probs=131.1
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 50 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 50 p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+....+++.+|..+...|++++|+..|++++..+|+++.. ...+.++.+|...|++++|+..|+++++.+|...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----- 104 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP----- 104 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-----
Confidence 4456789999999999999999999999999999987532 1234567899999999999999999999977532
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCHHHH--------------
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQ--------NDYESAERYYMKALSLESDKNKQC-------------- 186 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l--------GdydeA~~~yrKALeLdPdna~a~-------------- 186 (479)
....+++.+|.++... |++++|+..|++++..+|++....
T Consensus 105 ------------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~ 166 (235)
T TIGR03302 105 ------------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLA 166 (235)
T ss_pred ------------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHH
Confidence 1224788999999887 899999999999999999986331
Q ss_pred ----HHHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---------HHHHHHHHHHHHHHHHHhh
Q 011721 187 ----NLAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---------SYAKSFEHASLMLTELESQ 238 (479)
Q Consensus 187 ----nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---------~~~k~~~rA~eaL~el~~a 238 (479)
.+|.+|..+|++.+|+. +.+++...|+++.... ..++.+++|...+..+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36889999999999999 9999999887643211 1124455566655555443
No 46
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.8e-11 Score=126.94 Aligned_cols=206 Identities=17% Similarity=0.139 Sum_probs=168.9
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
.+.+-.+.+.+..+++..|+.+-.|+|..+|++..+|...|.++.+.||.++|+-.|+.+..+.|-+... +.+|..+|
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~--Y~GL~hsY 378 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI--YRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH--HHHHHHHH
Confidence 3555556677789999999999999999999999999999999999999999999999999999976543 45677999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHH---hc--------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVI---AC--------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESA 168 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~l---a~--------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA 168 (479)
...|++.||...-+.+++..|... .+ ++...++|.....+. +.++|....+...++.++...|.++++
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~-L~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS-LKINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhh-hccCCccHHHHHHHHHHHHhhCccchH
Confidence 999999999999999999877532 11 122222333322222 678898889999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhhh
Q 011721 169 ERYYMKALSLESDKNKQCNLAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQS 239 (479)
Q Consensus 169 ~~~yrKALeLdPdna~a~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a~ 239 (479)
+..++++|...||..-...||.++...+.+.+|.. |..||.++|++ +++.+=|..+++.-
T Consensus 458 i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~-----------~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS-----------KRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc-----------hHHHHHHHHHHhcc
Confidence 99999999999998876669999999999999999 99999999987 34555555566543
No 47
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.41 E-value=8e-12 Score=109.71 Aligned_cols=112 Identities=21% Similarity=0.186 Sum_probs=70.1
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 011721 41 LFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTE 120 (479)
Q Consensus 41 ~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p 120 (479)
.|.+++..+|++..++..+|..+...|++++|+..|++++..+|.++.
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------------------------------- 52 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR-------------------------------- 52 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH--------------------------------
Confidence 566677777776666777777777777777777777766666665432
Q ss_pred hHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHH
Q 011721 121 EVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIA 199 (479)
Q Consensus 121 ~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~d 199 (479)
++.++|.+|..+|++++|+.+|++++.++|+++..+. +|.+|...|+++
T Consensus 53 ------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 53 ------------------------------YWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Confidence 4455555566666666666666666666666555444 566666666666
Q ss_pred HHHH-HHHHHHhcCCC
Q 011721 200 EAKS-LLQAVRASSRN 214 (479)
Q Consensus 200 EAi~-l~kAL~l~P~n 214 (479)
+|+. +.+++.++|++
T Consensus 103 ~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 103 SALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHhcccc
Confidence 6666 55555555554
No 48
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.41 E-value=9.3e-12 Score=121.02 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.+...||.-|.++|++..|.+-++++++.+|++..+++ +++.+|..+|..+.|.+.|++|+.+.|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~--~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------------ 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHL--VRAHYYQKLGENDLADESYRKALSLAPN------------ 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH--HHHHHHHHcCChhhHHHHHHHHHhcCCC------------
Confidence 56788999999999999999999999999999876654 4568999999999999999999998655
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK---NKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn---a~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
+.++++|.|+.++.+|+|++|...|++|++ +|.. ++.+. +|.|-+++|+++.|.. +.++|
T Consensus 102 --------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 102 --------------NGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred --------------ccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 345999999999999999999999999997 4444 45664 9999999999999999 99999
Q ss_pred HhcCCCccchH----HH--HHHHHHHHHHHHHHHhhh
Q 011721 209 RASSRNEKMDE----SY--AKSFEHASLMLTELESQS 239 (479)
Q Consensus 209 ~l~P~n~~a~~----~~--~k~~~rA~eaL~el~~a~ 239 (479)
.++|+++.... .+ ...+..|...+..+....
T Consensus 167 ~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 167 ELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 99999876422 22 234556666666665544
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=5.1e-11 Score=125.06 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=46.3
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~nLG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
...|+++..+..+|.+++..|++++|.++|++++++.|++.....|+.++.++|+.++|.. +.+++.+
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456666677777777777777777777777777777776554457777777777777777 6666554
No 50
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.39 E-value=2.5e-11 Score=138.09 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=127.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
..+.+....|+++.|+..|.++++.+|+...+...++.++...|++++|+.++++++ +|.+.......+++.+|..+|
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC
Confidence 344578889999999999999999999986566699999999999999999999999 665544444455678999999
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
++++|++.|+++++.+|.. +.++..|+.+|...+++++|++.+++++.++|++.
T Consensus 117 dyd~Aiely~kaL~~dP~n--------------------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~ 170 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTN--------------------------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ 170 (822)
T ss_pred CHHHHHHHHHHHHhhCCCC--------------------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH
Confidence 9999999999999986653 34666667777777777777777777777777754
Q ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 184 KQCNLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 184 ~a~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
....++.++..+++..+|+. +.+++..+|++..
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 44225555555666666777 7777777777654
No 51
>PLN02789 farnesyltranstransferase
Probab=99.39 E-value=6e-11 Score=121.81 Aligned_cols=182 Identities=12% Similarity=0.068 Sum_probs=150.2
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCh--HHHHHHHHHHHHhcC
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEK-DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRS--EEAIEAIKSFRCLCA 84 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~g-d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gry--dEAie~lekal~l~P 84 (479)
..+++...|.....+...+.+....+ ++++|+.++.+++..+|++..+++..+.++...|+. ++++..+.+++..+|
T Consensus 60 t~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp 139 (320)
T PLN02789 60 TADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA 139 (320)
T ss_pred HHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc
Confidence 34677788887666666665655555 689999999999999999999999999999999874 788999999999999
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc--
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ-- 162 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l-- 162 (479)
++..++.+. +.++...|++++|++++.++|+++|. +..+|+++|.++..+
T Consensus 140 kNy~AW~~R--~w~l~~l~~~~eeL~~~~~~I~~d~~--------------------------N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 140 KNYHAWSHR--QWVLRTLGGWEDELEYCHQLLEEDVR--------------------------NNSAWNQRYFVITRSPL 191 (320)
T ss_pred ccHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHCCC--------------------------chhHHHHHHHHHHhccc
Confidence 998776554 46788899999999999999998654 334899999988876
Q ss_pred -CCH----HHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcCCCccc
Q 011721 163 -NDY----ESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 163 -Gdy----deA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
|.+ ++++.+..++|.++|+|..+++ ++.+|.. +++..+|+. +.+++..+|++..+
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~a 257 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFA 257 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHH
Confidence 333 5788888999999999999988 9988888 566788999 88888888877654
No 52
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.38 E-value=2e-11 Score=136.59 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=135.9
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
++.+.+.+-|.....+..++.+....|.+++|+.++..+++..|++..|+.+++.+|.+++++++|+..+++++..+|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 74 ELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence 34556777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
+...+ .++.++.++|++++|+++|++++... |+++.++.++|.++...|+.+
T Consensus 154 ~~~~~--~~a~~l~~~g~~~~A~~~y~~~~~~~--------------------------p~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 154 AREIL--LEAKSWDEIGQSEQADACFERLSRQH--------------------------PEFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred HHHHH--HHHHHHHHhcchHHHHHHHHHHHhcC--------------------------CCcHHHHHHHHHHHHHcCCHH
Confidence 87654 45688999999999999999999853 445569999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHH
Q 011721 167 SAERYYMKALSLESDKNKQC 186 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~ 186 (479)
+|...|++|+++..+-...|
T Consensus 206 ~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 206 RARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHHHHhhCcchHHH
Confidence 99999999999977666554
No 53
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.34 E-value=7.4e-11 Score=131.95 Aligned_cols=236 Identities=18% Similarity=0.160 Sum_probs=131.2
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~-~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
+++.|.|..+.+-...+.+..+||-.|+.+|++|+..+|.. ++....+|.++.++|+.+.|+..|+++++++|.+..+.
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~al 236 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSAL 236 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHH
Confidence 44455544444433334455555555555555555544432 12234455555555555555555555555555444333
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhH-H-HhhhhhHHHHHHHHHHH
Q 011721 91 LDNVLLE-LYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKT-Q-ITLVQELSRISGNLAWA 158 (479)
Q Consensus 91 l~~aLg~-lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~-~-l~L~pe~~~al~nLG~a 158 (479)
+.++... .+.....+..|...+.+|..+++..... .-+.+..+.....-. . ..-.+..++.++.+|..
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs 316 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS 316 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3222111 1112233444555555555554332100 001111111100000 0 11123344678999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----HHH---HHHHHH
Q 011721 159 YLQQNDYESAERYYMKALSLESDK-NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE----SYA---KSFEHA 228 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdn-a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~----~~~---k~~~rA 228 (479)
|..+|+|++|..+|.+++..+|++ .-.+. ||.+|+..|++++|+. +++.+...|++...-. .+. +.-.+.
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 999999999999999999999999 44555 9999999999999999 8888999999866311 111 111233
Q ss_pred HHHHHHHHhhhhcCCCChh
Q 011721 229 SLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 229 ~eaL~el~~a~~~~P~~~~ 247 (479)
..+...+.+.++..|.|..
T Consensus 397 d~a~~~l~K~~~~~~~d~~ 415 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQTPVDSE 415 (1018)
T ss_pred HHHHHHHHHHHhcccccHH
Confidence 4555555556666677664
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.33 E-value=9.7e-11 Score=119.36 Aligned_cols=211 Identities=17% Similarity=0.106 Sum_probs=140.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
.+.++...+..+++..|+..|-.|+..+|++..+++..|.+|...|+-.-|+.-+.+++.+-|+...+.+. -|.++.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ--Rg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ--RGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH--hchhhhh
Confidence 34556677889999999999999999999999999999999999999999999999999999997655544 3578999
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
+|.+++|+..|+.+|...|..........+.+. -.+. ..+.....-+...|++..|+++..+.|++.|=
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~----------~~e~-~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W 187 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL----------IQEH-WVLVQQLKSASGSGDCQNAIEMITHLLEIQPW 187 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh----------HHHH-HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc
Confidence 999999999999999987742210000000110 0000 12222233344556666666666666666665
Q ss_pred CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCC
Q 011721 182 KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTD 245 (479)
Q Consensus 182 na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~ 245 (479)
++..+. .+.||...|+...||. +..+-.+..+|..... ...-..+.+...|.+++..++++|+.
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 555554 5666666666666666 5555555555544321 12233455555666666666666653
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.32 E-value=7.7e-11 Score=134.10 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=147.9
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
.++-...-..|+.+...+..+++..++|++++|+..|+++++.+|+++.... .++.++...|+.++|+.++++++ .
T Consensus 21 ~~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~--dll~l~~~~G~~~~A~~~~eka~--~ 96 (822)
T PRK14574 21 ALFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD--DWLQIAGWAGRDQEVIDVYERYQ--S 96 (822)
T ss_pred HHHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH--HHHHHHHHcCCcHHHHHHHHHhc--c
Confidence 3443444578888899999999999999999999999999999999853322 34567888999999999999999 3
Q ss_pred hhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 120 EEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 120 p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
|... ....+..+|.+|..+|+|++|++.|+++++++|+++.++. |+.+|...++.
T Consensus 97 p~n~------------------------~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 97 SMNI------------------------SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred CCCC------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 2211 1124455688999999999999999999999999998887 99999999999
Q ss_pred HHHHH-HHHHHHhcCCCccch-HHHH-HHHHHHHHHHHHHHhhhhcCCCChhhHHHHHhhhhhh
Q 011721 199 AEAKS-LLQAVRASSRNEKMD-ESYA-KSFEHASLMLTELESQSMLQPTDYGEDKRKKILSSCT 259 (479)
Q Consensus 199 dEAi~-l~kAL~l~P~n~~a~-~~~~-k~~~rA~eaL~el~~a~~~~P~~~~~~~~~~~~~~~~ 259 (479)
++|+. +.+++..+|.+.... ..++ ....+..++++.+++.+..+|++.. ....++..++
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e--~~~~~~~~l~ 214 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE--VLKNHLEILQ 214 (822)
T ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH
Confidence 99999 888999999865421 1111 1235666688888899999998776 3344444333
No 56
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.30 E-value=1.2e-10 Score=114.81 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 35 PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lek 114 (479)
...|...+-+....+|++.++ .+++..+...|+-+.+..+..++...+|.+.... .+++....+.|++.+|+..|++
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll--~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELL--AAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHH--HHHHHHHHHhcchHHHHHHHHH
Confidence 334555555666677777777 7788888888888888888888777777765432 3356677788888888888888
Q ss_pred HHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHH
Q 011721 115 KLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLI 193 (479)
Q Consensus 115 ALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~ 193 (479)
+..+. |.+.++++.+|.+|.+.|++++|...|.+|+++.|+++..++ ||+.|+
T Consensus 126 A~~l~--------------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 126 AARLA--------------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HhccC--------------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 87763 445567888888888888888888888888888888887776 888888
Q ss_pred HcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 194 RLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 194 ~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
-.|+++.|.. ++.+...-+.+..
T Consensus 180 L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCCchH
Confidence 8888888888 5555555554443
No 57
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=3e-10 Score=115.15 Aligned_cols=174 Identities=15% Similarity=-0.020 Sum_probs=126.0
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHH
Q 011721 16 PAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLD 92 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~---~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~ 92 (479)
|.-..+|+..+.++...++++.|...+.++....+. ........|.++...|++++|++.+++++..+|++......
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 444556777777777778888888888887775543 34456667888889999999999999999999887643221
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
+..+...|++..+.....+++... ....|....++..+|.++..+|++++|+..+
T Consensus 83 ---~~~~~~~~~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 137 (355)
T cd05804 83 ---HLGAFGLGDFSGMRDHVARVLPLW----------------------APENPDYWYLLGMLAFGLEEAGQYDRAEEAA 137 (355)
T ss_pred ---hHHHHHhcccccCchhHHHHHhcc----------------------CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223444444444444444444320 0112344457788899999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+++++++|+++..+. ||.+|...|++++|+. +.+++...|.+
T Consensus 138 ~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 138 RRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 999999999987776 9999999999999999 88888887754
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.8e-10 Score=121.69 Aligned_cols=244 Identities=12% Similarity=0.080 Sum_probs=180.2
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
.++...|-+...+.-....+...|+..+-..+--+.+...|+.+-.++.+|.-|.-.|++.+|..+|-++..++|..+.+
T Consensus 269 ~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpa 348 (611)
T KOG1173|consen 269 ELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPA 348 (611)
T ss_pred HHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHH
Confidence 34556666654444333344556666666666667777899999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH--------hcCC-CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI--------ACGG-KSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~l--------a~~~-k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
++. +|..|.-.|..++|+.+|..|-++.|... .+.. ...+.|.. +....+.|.|.++-++..+|.+.+
T Consensus 349 Wl~--fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~-Ff~~A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 349 WLA--FGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK-FFKQALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred HHH--HhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH-HHHHHHhcCCCcchhhhhhhheee
Confidence 765 46789999999999999999999976521 1110 11122221 112226889999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCC----CH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH--HHH-HHHHHH
Q 011721 161 QQNDYESAERYYMKALSLESD----KN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE--SYA-KSFEHA 228 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeLdPd----na---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~--~~~-k~~~rA 228 (479)
..+.|.+|+.+|+++++.-++ .. ..++ ||.++.+++++++|+. +.++|.+.|.+....- .+. .-++..
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence 999999999999999954333 22 2244 9999999999999999 9999999999977422 111 223455
Q ss_pred HHHHHHHHhhhhcCCCChhhHHHHHhhhhhh
Q 011721 229 SLMLTELESQSMLQPTDYGEDKRKKILSSCT 259 (479)
Q Consensus 229 ~eaL~el~~a~~~~P~~~~~~~~~~~~~~~~ 259 (479)
..++..+.+++.++|++. ++..++..+.
T Consensus 506 d~Aid~fhKaL~l~p~n~---~~~~lL~~ai 533 (611)
T KOG1173|consen 506 DKAIDHFHKALALKPDNI---FISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHhcCCccH---HHHHHHHHHH
Confidence 666778888999999854 4555555443
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.27 E-value=1.1e-09 Score=115.14 Aligned_cols=234 Identities=12% Similarity=0.050 Sum_probs=165.0
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~-~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
+.+..+..|.....++.++.+....|+++.|..+|.++.+..|+.. .+....+.++...|++++|+..++.+++..|++
T Consensus 107 l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~ 186 (409)
T TIGR00540 107 IAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH 186 (409)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3444545555445566777888889999999999999999877764 355557999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---hhHHh-c----CCCchHHHHh-hch-h--HHHhhhh----hHHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKT---EEVIA-C----GGKSTKIARS-QGR-K--TQITLVQ----ELSR 150 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~---p~~la-~----~~k~~~~A~~-~g~-k--~~l~L~p----e~~~ 150 (479)
+... ..++.+|...|++++|++.+.+.++.. +.... . .......+.. .+. . ......| +++.
T Consensus 187 ~~~l--~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~ 264 (409)
T TIGR00540 187 KEVL--KLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIA 264 (409)
T ss_pred HHHH--HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHH
Confidence 8643 456789999999999999999999762 21110 0 0000000000 000 0 0012233 4678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH--H-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc--cchHHH---
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC--N-LAICLIRLNRIAEAKS-LLQAVRASSRNE--KMDESY--- 221 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~--n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~--~a~~~~--- 221 (479)
++..+|..+...|++++|+..++++++..|++.... . .....+..++.++++. +.++++..|+++ ...+..
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 999999999999999999999999999999998532 2 4555566788999999 889999999998 543321
Q ss_pred ---HHHHHHHHHHHHHHHhhhhcCCC
Q 011721 222 ---AKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 222 ---~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
.+.+++|.+.++.. .++...|+
T Consensus 345 ~~~~~~~~~A~~~le~a-~a~~~~p~ 369 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNV-AACKEQLD 369 (409)
T ss_pred HHHcccHHHHHHHHHHh-HHhhcCCC
Confidence 23455555544421 34445675
No 60
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.25 E-value=2.3e-10 Score=106.08 Aligned_cols=84 Identities=19% Similarity=0.117 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFE 226 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~ 226 (479)
.+.|++||.++..+|+|++|+.+|.+|+.++|+++..+. +|.||+..|+.++|+. +..++...-.++. +..--+
T Consensus 69 ~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~----~~~l~~ 144 (157)
T PRK15363 69 FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE----HQILRQ 144 (157)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh----HHHHHH
Confidence 348899999999999999999999999999999997765 9999999999999999 8888887743322 222335
Q ss_pred HHHHHHHHHH
Q 011721 227 HASLMLTELE 236 (479)
Q Consensus 227 rA~eaL~el~ 236 (479)
+|..+|..+.
T Consensus 145 ~A~~~L~~l~ 154 (157)
T PRK15363 145 RAEKMLQQLS 154 (157)
T ss_pred HHHHHHHHhh
Confidence 7777777654
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=2.7e-10 Score=123.07 Aligned_cols=176 Identities=21% Similarity=0.233 Sum_probs=138.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc---
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC--- 83 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~--- 83 (479)
.|+...++.+...++...|++++|..++.+|+.+ .+.....+.+++.++...+++++|+.+|++++++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 4444556667778899999999999999999973 34456778899999999999999999999987763
Q ss_pred --CCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 84 --ADD-SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 84 --P~d-a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
+++ ..+.+..-|+.+|..+|++++|.++|++||.+......- . .+.....+++||..|.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~----------------~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--K----------------DYGVGKPLNQLAEAYE 420 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--c----------------ChhhhHHHHHHHHHHH
Confidence 233 223444557899999999999999999999986543320 0 1112247899999999
Q ss_pred HcCCHHHHHHHHHHHHHc----CCCCH---HHH-HHHHHHHHcCCHHHHHHHHHHH
Q 011721 161 QQNDYESAERYYMKALSL----ESDKN---KQC-NLAICLIRLNRIAEAKSLLQAV 208 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeL----dPdna---~a~-nLG~~L~~lGr~dEAi~l~kAL 208 (479)
+.++|.+|...|..++.| .|+++ ..| |||.+|..+|++++|+.+...+
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 999999999999999987 46654 334 4999999999999999955443
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.24 E-value=5.7e-10 Score=113.09 Aligned_cols=174 Identities=12% Similarity=0.047 Sum_probs=126.4
Q ss_pred HhhCCCCCcHHHH---HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hcCCCh
Q 011721 12 IHKVPAGDSPYVR---AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC-LCADDS 87 (479)
Q Consensus 12 v~k~p~~~~pyv~---a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~-l~P~da 87 (479)
....|.+.++... .+.+....|++++|+.++++++...|++..++.. +..+...|++..+...+.+++. ..|.++
T Consensus 33 ~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (355)
T cd05804 33 AQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENP 111 (355)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCC
Confidence 4445544443222 2345678899999999999999999998877765 5555555444444443333332 223332
Q ss_pred HH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 88 QE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 88 ~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
.. .....++.++..+|++++|+..+++++++.|.. ..++..+|.+|...|+++
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~--------------------------~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD--------------------------AWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------------------------cHHHHHHHHHHHHcCCHH
Confidence 22 222345678999999999999999999986553 348899999999999999
Q ss_pred HHHHHHHHHHHcCCCCHH----HH-HHHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 167 SAERYYMKALSLESDKNK----QC-NLAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~----a~-nLG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
+|+.+|++++.+.|.++. .+ ++|.++..+|++++|+. +.+++...|
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 999999999999885432 23 39999999999999999 777776665
No 63
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.23 E-value=1.4e-09 Score=121.10 Aligned_cols=227 Identities=17% Similarity=0.161 Sum_probs=172.4
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+-.||+++|-+..||..++.++-..||.+++..+...|-.++|++.+-|..++....++|.+++|+-+|.+++..+|.+.
T Consensus 162 ~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~ 241 (895)
T KOG2076|consen 162 LMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW 241 (895)
T ss_pred HHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch
Confidence 45679999999999999999999999999999999888899999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH-------H----h--c--CCCc-----------------------
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV-------I----A--C--GGKS----------------------- 129 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~-------l----a--~--~~k~----------------------- 129 (479)
...+.. ..+|.+.|++..|...|.+++.+.|.. . . + ....
T Consensus 242 ~~~~er--s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ 319 (895)
T KOG2076|consen 242 ELIYER--SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDL 319 (895)
T ss_pred HHHHHH--HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHH
Confidence 544433 478999999999999999999887710 0 0 0 0000
Q ss_pred ------------hHHHHh-----hc---------------------------h------hH-H-----------------
Q 011721 130 ------------TKIARS-----QG---------------------------R------KT-Q----------------- 141 (479)
Q Consensus 130 ------------~~~A~~-----~g---------------------------~------k~-~----------------- 141 (479)
...+.. .. . .. .
T Consensus 320 ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~l 399 (895)
T KOG2076|consen 320 NILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEAL 399 (895)
T ss_pred HHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHH
Confidence 000000 00 0 00 0
Q ss_pred H-------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 142 I-------TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 142 l-------~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
+ ..-.+..+.++.++.+|...|+|.+|+.+|-.++...+.+. ..|. +|.||+.+|.+++|+. +.++|.++
T Consensus 400 l~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~ 479 (895)
T KOG2076|consen 400 LHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA 479 (895)
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 0 00112347889999999999999999999999999998876 3444 9999999999999999 99999999
Q ss_pred CCCccc--hHH-H---HHHHHHHHHHHHHHH
Q 011721 212 SRNEKM--DES-Y---AKSFEHASLMLTELE 236 (479)
Q Consensus 212 P~n~~a--~~~-~---~k~~~rA~eaL~el~ 236 (479)
|++..+ ..+ . ....++|.++|..+.
T Consensus 480 p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 480 PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 998664 111 1 234566666666654
No 64
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.4e-10 Score=116.50 Aligned_cols=109 Identities=22% Similarity=0.276 Sum_probs=62.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
=..+.++|.+|+..|.+||++.|. ++-+|.|.+.+|.++|.|+.|++..++||.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~--------------------------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~ 143 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT--------------------------NAVYYCNRAAAYSKLGEYEDAVKDCESALS 143 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC--------------------------cchHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 344556666666666666665333 223556666666666666666666666666
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHH
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELE 236 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~ 236 (479)
+||.+..+|- ||.+|..+|++++|+. |.+||.++|+|.. +...++.|+..+.+-.
T Consensus 144 iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~----~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 144 IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES----YKSNLKIAEQKLNEPK 200 (304)
T ss_pred cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH----HHHHHHHHHHHhcCCC
Confidence 6666666665 6666666666666666 5666666666542 2333444444444433
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=4.5e-10 Score=114.03 Aligned_cols=189 Identities=14% Similarity=0.117 Sum_probs=157.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
.+..++.-|-+.+|.+.++.+++..|. ++.+..|+.+|.+.++...|+..|.+.+...|.+.. +....+.+|..+|+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT--~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT--YLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh--hhhhhHHHHHHHHh
Confidence 345678889999999999999998775 567889999999999999999999999999999764 34456789999999
Q ss_pred HHHHHHHHHHHHHhchhHHh---------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 105 IEEEIELLKRKLKKTEEVIA---------CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la---------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+++|.++|+.++++.|..+. +.+.+.+.|+..++.. +.++-..++.+.|+|.+++-.++||-++..|++|
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi-LqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI-LQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH-HHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 99999999999999886531 2335566666555554 5777778889999999999999999999999999
Q ss_pred HHcCC--CCH-HH-HHHHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 176 LSLES--DKN-KQ-CNLAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 176 LeLdP--dna-~a-~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+...- +.+ +. ||||.+....|++.-|.. +.-+|..++++..+
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 99854 443 44 459999999999999999 77789999988765
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.1e-10 Score=118.41 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=158.0
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
.+.+-|. +..|..+..++..-.++..|+..|...+...|.+...+..+|.++...+++++|.++|+.+++.+|.+.++.
T Consensus 249 sL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEai 327 (478)
T KOG1129|consen 249 SLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAI 327 (478)
T ss_pred HhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceee
Confidence 3444444 456777778899999999999999999999999998899999999999999999999999999999987643
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---chhHH------hcCCCchHHHHhhchhHHH-hh-hhhHHHHHHHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKK---TEEVI------ACGGKSTKIARSQGRKTQI-TL-VQELSRISGNLAWAY 159 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl---~p~~l------a~~~k~~~~A~~~g~k~~l-~L-~pe~~~al~nLG~ay 159 (479)
. +++.-|.--|+.+-|+.+|++.|.+ .|+.. .+.....+.++..+..+.- .- ....+++|+|||.+.
T Consensus 328 A--cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 328 A--CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA 405 (478)
T ss_pred e--eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence 2 2334577789999999999999987 23211 1122233333322222211 11 234468999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 160 LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
...|++.-|..+|+-||.-||++..++| ||.+-+..|+.++|.. +..|-...|+-.
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 9999999999999999999999999998 9999999999999999 556677888643
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.20 E-value=1.2e-09 Score=108.00 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=143.7
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
..+-+.|...+. +.....+...|+-+.+..+..++....+.+...+..+|..+...|+|.+|+..++++..+.|+|...
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~ 136 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA 136 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence 345567766666 6666677778888888888888777888888888889999999999999999999999999999865
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
+ +.+|.+|.+.|++++|...|.+|+++.+. .+.+++|||+.|+-.|+++.|+
T Consensus 137 ~--~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--------------------------~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 137 W--NLLGAALDQLGRFDEARRAYRQALELAPN--------------------------EPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred h--hHHHHHHHHccChhHHHHHHHHHHHhccC--------------------------CchhhhhHHHHHHHcCCHHHHH
Confidence 4 56788999999999999999999998543 4459999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHH
Q 011721 170 RYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSL 204 (479)
Q Consensus 170 ~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l 204 (479)
.++..+....+.+..... |+.+...+|++++|..+
T Consensus 189 ~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999998886655 99999999999999983
No 68
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.19 E-value=4.3e-10 Score=116.86 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=76.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
+...|..+...|+|++|+.+|++++.++|+++..++ .++.+|..+|++++|+..+++|+.++|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~--~~a~~~~~~g~~~eAl~~~~~Al~l~P~-------------- 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYA--DRAQANIKLGNFTEAVADANKAIELDPS-------------- 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCcC--------------
Confidence 344556666666666666666666666666654332 2345566666666666666666665332
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRL 195 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~l 195 (479)
++.+++++|.+|+.+|+|++|+.+|+++++++|+++.+.. ++.|...+
T Consensus 69 ------------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 ------------LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 2347788899999999999999999999999999987776 77765544
No 69
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.19 E-value=3.1e-09 Score=111.61 Aligned_cols=230 Identities=12% Similarity=0.113 Sum_probs=154.1
Q ss_pred HHHHHhhCCCC-CcHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHCCChHHHHHHHHHHHHh
Q 011721 8 LFHVIHKVPAG-DSPYV---RAKRAQLVEKDPSRAISLFWAAINAGDRVDSAL-KDMAVVMKQLDRSEEAIEAIKSFRCL 82 (479)
Q Consensus 8 ~~~~v~k~p~~-~~pyv---~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al-~~LA~vL~~~GrydEAie~lekal~l 82 (479)
.++++.+.|.. +.|.+ .+..+....|+++.|..+|.+|.+.+|+...+. ...+.++...|++++|+..++++++.
T Consensus 103 A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~ 182 (398)
T PRK10747 103 VEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV 182 (398)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34666666654 22333 345566789999999999999999888875443 34489999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH---Hh-cCCCc----hHHHHhh-chh-H-H----H-hhhh
Q 011721 83 CADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV---IA-CGGKS----TKIARSQ-GRK-T-Q----I-TLVQ 146 (479)
Q Consensus 83 ~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~---la-~~~k~----~~~A~~~-g~k-~-~----l-~L~p 146 (479)
+|+++... ..++.+|...|++++|++.+.+..+..... .. +.... ...+... ... . . + .-.|
T Consensus 183 ~P~~~~al--~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 183 APRHPEVL--RLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred CCCCHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 99997653 346789999999999998888888753211 00 00000 0000000 000 0 0 0 1235
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----H
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE----S 220 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~----~ 220 (479)
+++.++..+|..+...|+.++|+..++++++..| ++.... ++.+ ..+++++++. +.+.++..|+|+.... .
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl 337 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL 337 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 5678889999999999999999999999999555 443322 4443 4489999999 7778889998876321 1
Q ss_pred --HHHHHHHHHHHHHHHHhhhhcCCCC
Q 011721 221 --YAKSFEHASLMLTELESQSMLQPTD 245 (479)
Q Consensus 221 --~~k~~~rA~eaL~el~~a~~~~P~~ 245 (479)
..+.+++|.+.++ +.+...|++
T Consensus 338 ~~~~~~~~~A~~~le---~al~~~P~~ 361 (398)
T PRK10747 338 LMKHGEWQEASLAFR---AALKQRPDA 361 (398)
T ss_pred HHHCCCHHHHHHHHH---HHHhcCCCH
Confidence 1234555555554 455557763
No 70
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3.2e-10 Score=118.61 Aligned_cols=186 Identities=17% Similarity=0.168 Sum_probs=139.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
.+.+..||+++|..+|+.|+.-+.....|++++|..+..+|++++|+++|-++-.+--++++..+. ++.+|..+.+..
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~q--ianiye~led~a 575 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQ--IANIYELLEDPA 575 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHhhCHH
Confidence 344567899999999999999888888999999999999999999999998877766666655443 568999999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCc---------hHHHHh-hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKS---------TKIARS-QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~---------~~~A~~-~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
+||+.|-++..+-|.......+. ...|.. |+.. ...-|-+.+..-.||..|....-.++|+.+|++|-
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~yds--yryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDS--YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhc--ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999988866543211100 001111 1110 11234455677788888888888888999999988
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
-+.|+...... ++.|+...|+|..|.. +...-...|.+..
T Consensus 654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 88888887665 8888888899999988 6666677787654
No 71
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.1e-10 Score=117.32 Aligned_cols=113 Identities=24% Similarity=0.301 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLL-----ELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg-----~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+.+.+-|.-+.+.++|.+|+..|.+|++++|.++ .. .+|.++|.++.|++..+.||.++|.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA-------VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~------- 147 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA-------VYYCNRAAAYSKLGEYEDAVKDCESALSIDPH------- 147 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc-------hHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-------
Confidence 4466788889999999999999999999999975 34 4577899999999999999998654
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIA 199 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~d 199 (479)
...+|..||.+|+.+|+|++|++.|+|||+|+|++..... |..+-..++...
T Consensus 148 -------------------yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 148 -------------------YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -------------------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 4459999999999999999999999999999999997665 777666665544
No 72
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.17 E-value=3e-09 Score=119.28 Aligned_cols=245 Identities=16% Similarity=0.079 Sum_probs=176.2
Q ss_pred HHHHHhhCCCCCcH--HHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 8 LFHVIHKVPAGDSP--YVRAKRAQLVEKD--PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 8 ~~~~v~k~p~~~~p--yv~a~~~~L~~gd--~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
+|....++-....+ +++++ .++..++ .+.|...|.-.++..|++.-+++.-|.+....|+|-.|+.+|+.++.++
T Consensus 116 ~~~~A~ki~m~~~~~l~~~~~-~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~in 194 (1018)
T KOG2002|consen 116 LFDLADKIDMYEDSHLLVQRG-FLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRIN 194 (1018)
T ss_pred HhhHHHHhhccCcchhhhhhh-hhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcC
Confidence 34444444433322 33343 3444444 5999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc-CC-----------CchHHHHhhchhHHHhhhhhHHHH
Q 011721 84 ADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC-GG-----------KSTKIARSQGRKTQITLVQELSRI 151 (479)
Q Consensus 84 P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~-~~-----------k~~~~A~~~g~k~~l~L~pe~~~a 151 (479)
|.-.. -...+.|-++.++|+.+.|+..|.+|+.++|..... .+ .....+..++..+ ..+++++|.+
T Consensus 195 p~~~a-D~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a-y~~n~~nP~~ 272 (1018)
T KOG2002|consen 195 PACKA-DVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRA-YKENNENPVA 272 (1018)
T ss_pred cccCC-CccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHH-HhhcCCCcHH
Confidence 86421 122345578899999999999999999999974311 00 1111222222211 4678899999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc-c--hH--HH
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK-M--DE--SY 221 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~-a--~~--~~ 221 (479)
++.|+.-|+..|+|..+...+..|+...-..+ ..+. +|.+|..+|+|++|.. |.+++..+|++.. . +. .+
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 99999999999999999999999999875544 3355 9999999999999999 9999999999822 2 11 22
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChhhHHHHHhhh
Q 011721 222 AKSFEHASLMLTELESQSMLQPTDYGEDKRKKILS 256 (479)
Q Consensus 222 ~k~~~rA~eaL~el~~a~~~~P~~~~~~~~~~~~~ 256 (479)
++. ....+....|++-+...|..++.+.+...+.
T Consensus 353 i~~-~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 353 IKR-GDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHh-chHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 222 3444555555556666787777666664433
No 73
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.16 E-value=1e-09 Score=96.27 Aligned_cols=117 Identities=17% Similarity=0.046 Sum_probs=96.7
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+..++...|.....+...+..++..+++++|+..|.+++..+|.+..++..+|.++...|++++|+..|++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45567777777666666777788899999999999999999999999999999999999999999999999988888775
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
+. .++++|.+|...|+++
T Consensus 85 ~~--------------------------------------------------------------~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 85 PR--------------------------------------------------------------PYFHAAECLLALGEPE 102 (135)
T ss_pred hH--------------------------------------------------------------HHHHHHHHHHHcCCHH
Confidence 32 5566777777788888
Q ss_pred HHHHHHHHHHHcCCCCHHH
Q 011721 167 SAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a 185 (479)
+|+..|+++++++|++...
T Consensus 103 ~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 103 SALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHHHhccccchH
Confidence 8888888888888777643
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=6.5e-10 Score=115.47 Aligned_cols=165 Identities=16% Similarity=0.078 Sum_probs=140.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH----------HH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV----------LL 96 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a----------Lg 96 (479)
.+....+++++|...--..+++++.+..+++.-|.++...++.+.|+..|++++.++|++........ -|
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 34567799999999998899999999999999999999999999999999999999998643211110 13
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
+-..+.|++.+|.+.|..||.++|.... .++..|.|+|.+...+|+..+|+.....|+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~----------------------~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKK----------------------TNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccc----------------------hhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 5667899999999999999999887432 133488999999999999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+|+|....++. -|.|++.++++++|.+ +.+++++..+
T Consensus 315 ~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 315 KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999998 9999999999999999 9999887765
No 75
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=8e-09 Score=109.32 Aligned_cols=152 Identities=20% Similarity=0.154 Sum_probs=129.8
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+|....+.+..+..+...|.+++|+..+..+++..|+|+. +....++++...|+..+|++.|++++.++|...
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~--~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~----- 374 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY--YLELAGDILLEANKAKEAIERLKKALALDPNSP----- 374 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-----
Confidence 3677789999999999999999999999999999999874 445567999999999999999999999977642
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQ 206 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~k 206 (479)
....++|.+|++.|++.+|+..+...+.-+|+++..|. ||.+|..+|+..+|.. .-+
T Consensus 375 ---------------------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 375 ---------------------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred ---------------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 37799999999999999999999999999999999998 9999999999999999 777
Q ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHHhhh
Q 011721 207 AVRASSRNEKMDESYAKSFEHASLMLTELESQS 239 (479)
Q Consensus 207 AL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a~ 239 (479)
.+.+.-+ ++.|.+.+....+..
T Consensus 434 ~~~~~G~-----------~~~A~~~l~~A~~~~ 455 (484)
T COG4783 434 GYALAGR-----------LEQAIIFLMRASQQV 455 (484)
T ss_pred HHHhCCC-----------HHHHHHHHHHHHHhc
Confidence 7766542 345555555555444
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=1.1e-08 Score=103.93 Aligned_cols=205 Identities=16% Similarity=0.185 Sum_probs=160.1
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFR 80 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~-----~~Al~~LA~vL~~~GrydEAie~lekal 80 (479)
+.|-+++.-.|+.....+.+|.++-..|..|+||..-...+.. |+. .-|+..||.=|...|-+|.|+..|..+.
T Consensus 56 dlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~ 134 (389)
T COG2956 56 DLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLV 134 (389)
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 4567888888988899999999999999999999887665553 332 3578899999999999999999998876
Q ss_pred HhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC--------------CCchHHHHhhchhHHHhhhh
Q 011721 81 CLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG--------------GKSTKIARSQGRKTQITLVQ 146 (479)
Q Consensus 81 ~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~--------------~k~~~~A~~~g~k~~l~L~p 146 (479)
.. |..+...+. -|..+|....++++||+.-++..++.++...+. ....+.|+....++ +..+|
T Consensus 135 de-~efa~~Alq-qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA-lqa~~ 211 (389)
T COG2956 135 DE-GEFAEGALQ-QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA-LQADK 211 (389)
T ss_pred cc-hhhhHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HhhCc
Confidence 53 333333333 255899999999999999999998876532110 01122233222222 56677
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
...++-..||.+++..|+|+.|++.++.+++.||+.. .... |-.||..+|+.++.+. +.++.+..++.
T Consensus 212 ~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 212 KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 7888889999999999999999999999999999987 5666 9999999999999999 77788887764
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.4e-09 Score=114.08 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=122.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
.+.++...++++.|+.+|.+++...-+ ..++......++++...+....++|.-+...- .-|+.+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r--~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEER--EKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHH--HHHHHHHhccC
Confidence 344455556777777777776653221 44555666666677666666666666433221 23577889999
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
|.+|+.+|.+||+. +|+++.+|.|+|.+|..+|.+..|+...+++++++|++..
T Consensus 374 y~~Av~~YteAIkr--------------------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKR--------------------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred HHHHHHHHHHHHhc--------------------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence 99999999998887 4556679999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 185 QCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 185 a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+|. -|.++..+.+|++|+. |.+++.++|++..+
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 998 9999999999999999 99999999988663
No 78
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=2.2e-09 Score=90.91 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
++++.+|..+...|++++|++.|.+++..+|++.. ....+.++.+|...|++++|+.+|++++..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--------- 73 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP--------- 73 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---------
Confidence 46778888888888888888888888888877531 11223355667777777777777777776654421
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
..+.+++++|.+|..+|++++|+.+|+++++..|++..+
T Consensus 74 --------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 74 --------------KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred --------------cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 112366777777777777777777777777777776543
No 79
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.09 E-value=3.5e-10 Score=88.80 Aligned_cols=65 Identities=28% Similarity=0.429 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC-CHHHHHH-HHHHHHhcC
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN-RIAEAKS-LLQAVRASS 212 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG-r~dEAi~-l~kAL~l~P 212 (479)
++.+|.++|.++..+|+|++|+.+|.+|++++|+++.++. +|.+|..+| ++++|+. +.++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4568999999999999999999999999999999998887 999999999 7999999 999999998
No 80
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.09 E-value=1.7e-09 Score=112.39 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=87.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|..+...|+|++|+.+|++||+++|. +..+++++|.+|..+|+|++|+..+++|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~--------------------------~~~a~~~~a~~~~~~g~~~eAl~~~~~A 62 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN--------------------------NAELYADRAQANIKLGNFTEAVADANKA 62 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677899999999999999998554 4458999999999999999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.++|+++.++. +|.+|..+|+|++|+. +.+++.++|++..
T Consensus 63 l~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 63 IELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999888 9999999999999999 9999999998865
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1e-08 Score=106.69 Aligned_cols=231 Identities=12% Similarity=0.031 Sum_probs=163.3
Q ss_pred hCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH-------------------------------
Q 011721 14 KVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVV------------------------------- 62 (479)
Q Consensus 14 k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~v------------------------------- 62 (479)
..|-++.-.-..+.++...|++++|+.-|.++.-++|....+.-..|.+
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 3344444444556677888999999999999998888755444333333
Q ss_pred ---HHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC---------Cch
Q 011721 63 ---MKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG---------KST 130 (479)
Q Consensus 63 ---L~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~---------k~~ 130 (479)
+....+|..|+-+-++++..+|++.++.+. -|.++...||.++|+-.|+.|+.+.|-.+..+. +..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alil--KG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALIL--KGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHh--ccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 444455666666666777777777655432 357888999999999999999999875442211 122
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHH
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLA-WAYL-QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQ 206 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG-~ay~-~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~k 206 (479)
++|....+-. +..-|..+.++..+| .++. .----++|.++|+++|.++|+...+.+ +|.++...|++++++. +++
T Consensus 385 kEA~~~An~~-~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 385 KEANALANWT-IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 2222111110 344566667777776 4443 334558999999999999999999888 9999999999999999 888
Q ss_pred HHHhcCCCccch--HHHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 207 AVRASSRNEKMD--ESYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 207 AL~l~P~n~~a~--~~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
+|...|+..... ...+......++++.++..+++++|.++.
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 999999865421 12344557778889999999999999876
No 82
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.07 E-value=3.1e-09 Score=98.58 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
.++.++|.+|..+|++++|+.+|++++.+.|++...+. +|.+|..+|+...|.. +..++
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~ 133 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE 133 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH
Confidence 37788999999999999999999999999999988776 9999999998777666 55554
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=1.7e-08 Score=103.16 Aligned_cols=179 Identities=12% Similarity=0.089 Sum_probs=147.7
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH---
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ--- 88 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~--- 88 (479)
|.-.|.+-..+.+.+.+++..|.-.-|+.-+.++|.+.|++..|....|.++..+|.+++|+.-|..++..+|.+..
T Consensus 65 ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e 144 (504)
T KOG0624|consen 65 VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE 144 (504)
T ss_pred HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHH
Confidence 44444444455677789999999999999999999999999999999999999999999999999999999996521
Q ss_pred HHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH
Q 011721 89 ESLDNVL----------LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA 158 (479)
Q Consensus 89 ~~l~~aL----------g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a 158 (479)
+.-.+++ +..+.-.|++..||++....|++.|= ++..+-..+.+
T Consensus 145 aqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W--------------------------da~l~~~Rakc 198 (504)
T KOG0624|consen 145 AQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW--------------------------DASLRQARAKC 198 (504)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc--------------------------hhHHHHHHHHH
Confidence 1111111 13455678888888888888887543 33467778999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 159 YLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|...|+...|+..++.|-.+..|+...+. ++.+|...|+.+.++. +.+.|.++|++..
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 99999999999999999999999998877 9999999999999999 9999999998743
No 84
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06 E-value=3.7e-09 Score=97.50 Aligned_cols=133 Identities=11% Similarity=0.080 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHH
Q 011721 32 EKDPSRAISLFWAAINAGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~--~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deA 108 (479)
++++..+...+...++..+. ...+++.+|.++...|++++|+..|++++.+.|+... ......++.+|...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 44555666666554444443 3566789999999999999999999999998776432 22344578899999999999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHcCCC
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE-------SAERYYMKALSLESD 181 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd-------eA~~~yrKALeLdPd 181 (479)
+.+|++++.+.|..... ...-..++.++|..+..+|+++ +|+.+|++++.++|+
T Consensus 92 ~~~~~~Al~~~~~~~~~-------------------~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 92 LEYYFQALERNPFLPQA-------------------LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHhCcCcHHH-------------------HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999986553210 0001124444444444888876 666777778888887
Q ss_pred CH
Q 011721 182 KN 183 (479)
Q Consensus 182 na 183 (479)
+.
T Consensus 153 ~~ 154 (168)
T CHL00033 153 NY 154 (168)
T ss_pred cH
Confidence 65
No 85
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.05 E-value=4.6e-09 Score=97.49 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=79.4
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCc
Q 011721 51 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKS 129 (479)
Q Consensus 51 ~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~ 129 (479)
....+++.+|.++...|++++|+.+|++++.+.|+... ......++.+|...|++++|+.+|++++.+.|..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------- 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ------- 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------
Confidence 44566889999999999999999999999988776432 2344557789999999999999999999885543
Q ss_pred hHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH--------------HHHHHHHHHHHHcCCCC
Q 011721 130 TKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY--------------ESAERYYMKALSLESDK 182 (479)
Q Consensus 130 ~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy--------------deA~~~yrKALeLdPdn 182 (479)
..++.++|.+|..+|+. ++|+.++++++.++|++
T Consensus 106 -------------------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 106 -------------------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred -------------------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 34778888888888884 45555555555555554
No 86
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.05 E-value=3.1e-08 Score=110.66 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=134.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
......|++++|+..+..+|+.+|.+..+|+.||.||.++|+.++|....-.|-.++|.+.+.+.. ++++..++|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~--ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR--LADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH--HHHHHHhcccHH
Confidence 445677999999999999999999999999999999999999999999999999999999866544 568899999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN--- 183 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna--- 183 (479)
.|+-+|.+||..+|.. ...++....+|.++|++..|...|.+++.+.|...
T Consensus 225 qA~~cy~rAI~~~p~n--------------------------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSN--------------------------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHHHHHHHHHhcCCcc--------------------------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 9999999999986553 34788999999999999999999999999999322
Q ss_pred ---HHHHHHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 184 ---KQCNLAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 184 ---~a~nLG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
.++..+..+...++-+.|++ +..++..
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 12235777888888888999 7788873
No 87
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.04 E-value=3.8e-09 Score=97.38 Aligned_cols=112 Identities=11% Similarity=0.004 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhH
Q 011721 69 SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQEL 148 (479)
Q Consensus 69 ydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~ 148 (479)
|..+...+...+...+.+......+.++.++..+|++++|+..|++++.+.+... ..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-----------------------~~ 71 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-----------------------DR 71 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-----------------------hh
Confidence 4444445544444455444444455567889999999999999999999854311 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHH-------HcCCHHHHHH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLI-------RLNRIAEAKS 203 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~-------~lGr~dEAi~ 203 (479)
+.++.++|.+|..+|++++|+.+|++|+.++|.+...++ +|.++. .+|++++|+.
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHH
Confidence 348999999999999999999999999999999998776 888888 6667664443
No 88
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=6.1e-08 Score=98.58 Aligned_cols=235 Identities=13% Similarity=0.097 Sum_probs=165.3
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
++..+...+.| +.|++.-. .+...++++|+.+|...++.+|..-+++..||.++...|..|.||.+-+.++. .|+
T Consensus 26 q~~~~qa~~ls---r~Yv~GlN-fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spd 100 (389)
T COG2956 26 QDKQDQANRLS---RDYVKGLN-FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPD 100 (389)
T ss_pred hhHHHHHhhcc---HHHHhHHH-HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCC
Confidence 34444444444 57887754 66689999999999999999999999999999999999999999998876654 454
Q ss_pred ChH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH-------hcCCCc--hHHHHhhchhHHHhhhh-----hH
Q 011721 86 DSQ---ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI-------ACGGKS--TKIARSQGRKTQITLVQ-----EL 148 (479)
Q Consensus 86 da~---~~l~~aLg~lY~klGr~deAie~lekALkl~p~~l-------a~~~k~--~~~A~~~g~k~~l~L~p-----e~ 148 (479)
-.. ......||.=|+..|-+|.|...|......-.... .++... =.+|+...++. ..+.+ +.
T Consensus 101 lT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L-~k~~~q~~~~eI 179 (389)
T COG2956 101 LTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERL-VKLGGQTYRVEI 179 (389)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHcCCccchhHH
Confidence 322 22223467789999999999999998877422111 110000 01222211111 12222 33
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc-hHH---HH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM-DES---YA 222 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a-~~~---~~ 222 (479)
+..|-.|+..++...+.+.|...+.||++-+|....+-. ||.+++..|+|+.|++ +...++.+|+.... .+. .-
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999999997766 9999999999999999 88888888865331 111 12
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 223 KSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 223 k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
..+++..+.+.-+.++....++.-
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccCCcc
Confidence 344566666666666666666533
No 89
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.3e-08 Score=106.77 Aligned_cols=213 Identities=15% Similarity=0.066 Sum_probs=109.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHH--CCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCH
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVD-SALKDMAVVMKQ--LDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRI 105 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~-~Al~~LA~vL~~--~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~ 105 (479)
++..||++.|++.++-.-+.+.+.. .|-.+|..++.- -.++.+|..+-..++.++--++.+..+ -|++-...|++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n--kgn~~f~ngd~ 506 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN--KGNIAFANGDL 506 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc--CCceeeecCcH
Confidence 4556666666655532222222222 223344333333 234555555555555444333332221 12333445555
Q ss_pred HHHHHHHHHHHHhchhHH-hc-C-C------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 106 EEEIELLKRKLKKTEEVI-AC-G-G------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 106 deAie~lekALkl~p~~l-a~-~-~------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
++|.+.|++||.-+.... ++ + + ...+.|+.++.+. ..+..++.++++.++.+|..+.+..+|++.|-++.
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl-h~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL-HAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 555555555554432211 00 0 0 0111222222211 12234556677888888888888888888888888
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCC
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
.+-|+++..+. ||.+|-+.|+..+|.+ +.......|-|....+ .+-....=-++.+..|+++.-..|.
T Consensus 586 slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 88888887777 8888888888888887 6677777777654211 1111112234455556666666665
No 90
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.98 E-value=6.3e-09 Score=80.55 Aligned_cols=99 Identities=26% Similarity=0.322 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
+++.+|.++...|++++|+..|++++...|.+... ...++.+|...|++++|+..|++++.+.|..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------ 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA--YYNLAAAYYKLGKYEEALEDYEKALELDPDN------------ 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc------------
Confidence 46778888888888888888888888888876533 3345677888888888888888888774432
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
..++..+|.++..+|++++|..++.+++.+.|+
T Consensus 68 --------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 68 --------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred --------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 247788899999999999999999999888874
No 91
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=3.8e-08 Score=97.23 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=100.5
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+|+.-..+-.+.++....|+.+-|..++.++....|+.... ...-+..+...|++++|+++|+..|.-+|......-+
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV--~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR 125 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRV--GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR 125 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH
Confidence 33333334444555555555555555555555555554321 1112344555555555555555555554432211000
Q ss_pred chHHHHhhchhHH--------HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC---
Q 011721 129 STKIARSQGRKTQ--------ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN--- 196 (479)
Q Consensus 129 ~~~~A~~~g~k~~--------l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG--- 196 (479)
+-......|+... +..-+.+.++|..|+.+|...|+|++|.-||+..+=+.|.++..+. ||.++.-+|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 0000001111100 2333556689999999999999999999999999999999998887 999988876
Q ss_pred CHHHHHH-HHHHHHhcCCCcc
Q 011721 197 RIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 197 r~dEAi~-l~kAL~l~P~n~~ 216 (479)
++.-|.. |.+++.++|.+..
T Consensus 206 N~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHHHHHHHhChHhHH
Confidence 6777888 8899999997654
No 92
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.97 E-value=2e-08 Score=109.42 Aligned_cols=132 Identities=16% Similarity=0.001 Sum_probs=86.0
Q ss_pred HHHHHHHHCCC---hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhchhHHhcC
Q 011721 58 DMAVVMKQLDR---SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS--------KRIEEEIELLKRKLKKTEEVIACG 126 (479)
Q Consensus 58 ~LA~vL~~~Gr---ydEAie~lekal~l~P~da~~~l~~aLg~lY~kl--------Gr~deAie~lekALkl~p~~la~~ 126 (479)
..|.-|...++ +..|+.+|+++++++|+++.++...++ +|... ++...+.....+++.+...
T Consensus 344 lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~--~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~----- 416 (517)
T PRK10153 344 YQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKAL--ADIVRHSQQPLDEKQLAALSTELDNIVALPEL----- 416 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH--HHHHHHhcCCccHHHHHHHHHHHHHhhhcccC-----
Confidence 34444444433 667777777777777776554433222 22211 2345566666666554211
Q ss_pred CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-H
Q 011721 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-L 204 (479)
Q Consensus 127 ~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l 204 (479)
+..+.++.-+|.++...|++++|..+|++|++++|+ ..+|. +|.++...|++++|+. +
T Consensus 417 -------------------~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 417 -------------------NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred -------------------cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 112246677777788888888888888888888884 66676 8888888888888888 8
Q ss_pred HHHHHhcCCCcc
Q 011721 205 LQAVRASSRNEK 216 (479)
Q Consensus 205 ~kAL~l~P~n~~ 216 (479)
.+|+.++|.++.
T Consensus 477 ~~A~~L~P~~pt 488 (517)
T PRK10153 477 STAFNLRPGENT 488 (517)
T ss_pred HHHHhcCCCCch
Confidence 888888887654
No 93
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.96 E-value=1.9e-07 Score=92.41 Aligned_cols=179 Identities=13% Similarity=0.019 Sum_probs=132.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH-HHHHHHHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVD---SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL-DNVLLELY 99 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~---~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l-~~aLg~lY 99 (479)
..+...+..|++++|+..|++++...|... .+.+.+|.++.+.+++++|+..|++++..+|+++.... ...+|.++
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 444567788999999999999999888755 44589999999999999999999999999999865322 22233333
Q ss_pred HHcC------------------CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH
Q 011721 100 KRSK------------------RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ 161 (479)
Q Consensus 100 ~klG------------------r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~ 161 (479)
..++ ...+|+..|++.++.+|+..-. ..|... ...+...-++--+..|..|.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya-----~~A~~r----l~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT-----TDATKR----LVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH-----HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3332 1357889999999998874310 011100 011122222334688999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHHHHHHHHhc
Q 011721 162 QNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKSLLQAVRAS 211 (479)
Q Consensus 162 lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~l~kAL~l~ 211 (479)
.|.|..|+.-++.+++--|+.+ +++. |+.+|..+|..++|....+.|..+
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~n 241 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAAN 241 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Confidence 9999999999999999999986 4566 999999999999999977766544
No 94
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9.6e-09 Score=106.95 Aligned_cols=215 Identities=20% Similarity=0.138 Sum_probs=148.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH----------------
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES---------------- 90 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~---------------- 90 (479)
..+...++|.+|+..|..||...|++...|.+.+..|...|+|++|.-..++.+.+.|......
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 4456777888888888888888888888888888888888888888888877777666532100
Q ss_pred ----------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh---cCC------
Q 011721 91 ----------------------------------LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA---CGG------ 127 (479)
Q Consensus 91 ----------------------------------l~~aLg~lY~klGr~deAie~lekALkl~p~~la---~~~------ 127 (479)
.-..-+.++..+|++++|+..--..+++++.... +.+
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 0000125677788888888888888877664321 111
Q ss_pred CchHHHHhhchhHHHhhhhh------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HH-HHHH
Q 011721 128 KSTKIARSQGRKTQITLVQE------------LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK----QC-NLAI 190 (479)
Q Consensus 128 k~~~~A~~~g~k~~l~L~pe------------~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~----a~-nLG~ 190 (479)
.....+..|+... +.++|+ .-..+-.-|+-..+.|+|..|.++|..||.++|++.. .| |+|.
T Consensus 217 ~~~~ka~~hf~qa-l~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 217 DNADKAINHFQQA-LRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred cchHHHHHHHhhh-hccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 1122333333222 333333 3467788899999999999999999999999999852 23 4999
Q ss_pred HHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcC
Q 011721 191 CLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQ 242 (479)
Q Consensus 191 ~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~ 242 (479)
+...+|+..+|+. +..|+.++|.-.++.. ..-..+++-.++++.++++....
T Consensus 296 v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999 9999999998766422 11123455555555555555443
No 95
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.93 E-value=1.2e-08 Score=78.85 Aligned_cols=92 Identities=28% Similarity=0.366 Sum_probs=81.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
++.+|...|++++|+..|+++++..|.. ..++..+|.+|...|++++|+.+|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDN--------------------------ADAYYNLAAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCcc--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999885542 24789999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
++.+.|.+...+. +|.++...|++++|.. +.+++...|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 9999999987776 9999999999999999 878887776
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=1.1e-07 Score=104.87 Aligned_cols=238 Identities=16% Similarity=0.072 Sum_probs=161.7
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINA-GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l-~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
-++.++.+.|+++....++..-+...++.+.|..+.+++++. +.....++..||.++..++++.+|+.+...++...|+
T Consensus 466 ale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 467889999998877666665567789999999999999998 4556788999999999999999999999999998887
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-------------------------------------------h-
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTE-------------------------------------------E- 121 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~p-------------------------------------------~- 121 (479)
|-..... -+.+-...|+.++|+......|.+.. .
T Consensus 546 N~~l~~~--~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 546 NHVLMDG--KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhchh--hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 4211000 01122224444444444433333211 0
Q ss_pred ----H--------------------------H-h--c-CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 122 ----V--------------------------I-A--C-GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 122 ----~--------------------------l-a--~-~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
+ . + + .....+.+..+...+ -.+.|..+..|+..|.++...|+.++
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea-~~~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA-SKIDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HhcchhhHHHHHHhhHHHHHHHhhHH
Confidence 0 0 0 0 001122222211111 24567778899999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH---HHHHHHhcCCCccchH--H-HHHHHHHHHHHHHHHHhhhh
Q 011721 168 AERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS---LLQAVRASSRNEKMDE--S-YAKSFEHASLMLTELESQSM 240 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~---l~kAL~l~P~n~~a~~--~-~~k~~~rA~eaL~el~~a~~ 240 (479)
|.+.|.-|+.++|++..... ||.+|.+.|+..-|.. +..|++++|.|.++.. . -.+..++..++..-+..++.
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999999999999888 9999999997655555 5679999999987633 1 12333444444455555555
Q ss_pred cCCCChh
Q 011721 241 LQPTDYG 247 (479)
Q Consensus 241 ~~P~~~~ 247 (479)
+.+.++-
T Consensus 783 Le~S~PV 789 (799)
T KOG4162|consen 783 LEESNPV 789 (799)
T ss_pred hccCCCc
Confidence 5555543
No 97
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.92 E-value=2.2e-08 Score=84.71 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=85.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.++..+...|++++|+..|++++..+|... ....+++.+|.++...|++++|+.+|+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 63 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKST-----------------------YAPNAHYWLGEAYYAQGKYADAAKAFL 63 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-----------------------ccHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 356788999999999999999998865421 123478999999999999999999999
Q ss_pred HHHHcCCCC---HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 174 KALSLESDK---NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 174 KALeLdPdn---a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++...|++ +.++. +|.++..+|++++|+. +.+++...|++..
T Consensus 64 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 64 AVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999986 34555 9999999999999999 8889999998754
No 98
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.91 E-value=4.7e-08 Score=111.54 Aligned_cols=165 Identities=17% Similarity=0.089 Sum_probs=108.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh----------------
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS---------------- 87 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da---------------- 87 (479)
....++...+++++|+..+..++...|+...+|+.+|.++.+.+++++|... .++...+.+.
T Consensus 36 ~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~ 113 (906)
T PRK14720 36 DLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYG 113 (906)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhh
Confidence 3445566778888888888888888888888888888888888888888776 6666555543
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 88 -QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 88 -~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
.-.....||.||.++|+.++|+..|+++|+++|.. +.+++++|..|... +.+
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--------------------------~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--------------------------PEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--------------------------HHHHHHHHHHHHHh-hHH
Confidence 00122345678888888888888888888875543 23445555555444 555
Q ss_pred HHHHHHHHHHH--------------------cCCCCHHH--------HH-HH------------HHHHHcCCHHHHHH-H
Q 011721 167 SAERYYMKALS--------------------LESDKNKQ--------CN-LA------------ICLIRLNRIAEAKS-L 204 (479)
Q Consensus 167 eA~~~yrKALe--------------------LdPdna~a--------~n-LG------------~~L~~lGr~dEAi~-l 204 (479)
+|+.++.+|+. .+|++.+. .. ++ .+|...++|++++. +
T Consensus 167 KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 167 KAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 55555554444 45665432 01 23 56666777777777 6
Q ss_pred HHHHHhcCCCccc
Q 011721 205 LQAVRASSRNEKM 217 (479)
Q Consensus 205 ~kAL~l~P~n~~a 217 (479)
...|..+|.|.++
T Consensus 247 K~iL~~~~~n~~a 259 (906)
T PRK14720 247 KKILEHDNKNNKA 259 (906)
T ss_pred HHHHhcCCcchhh
Confidence 6677777777664
No 99
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.91 E-value=9.1e-08 Score=86.46 Aligned_cols=120 Identities=17% Similarity=0.073 Sum_probs=76.1
Q ss_pred HCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHh
Q 011721 65 QLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQIT 143 (479)
Q Consensus 65 ~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~ 143 (479)
..++...+...++.++..+|+.+.. ...+.++.++...|++++|+..|+.++...+....
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l------------------- 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL------------------- 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------------
Confidence 5677777777777777777776432 22334567777777777777777777765422110
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 144 LVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 144 L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
...+.+.||.+++.+|+|++|+..++.+ .-.+-.+.... +|.+|..+|++++|+. |.+||
T Consensus 84 ----~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 ----KPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 0125677788888888888888887552 22222233444 7888888888888887 66653
No 100
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.90 E-value=4.9e-09 Score=81.51 Aligned_cols=63 Identities=29% Similarity=0.298 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
+.+|.+++..|+|++|+.+|+++++.+|+++.++. ||.++..+|++++|+. +.+++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999888 9999999999999999 889999999874
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.7e-08 Score=102.41 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHH-HHhcCCCcc
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQA-VRASSRNEK 216 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kA-L~l~P~n~~ 216 (479)
.+..++.++.+++.+|+|++|+..+++|++.+|++++++. ++.+...+|+..++.. +... ...+|+++.
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 4457888999999999999999999999999999998764 9999999998855554 5544 557888765
No 102
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.89 E-value=9.6e-08 Score=86.31 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=97.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcC
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSK 103 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~---~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klG 103 (479)
..+..++...+...+.+.+...|+. ..+.+.+|.++...|++++|+..|+.++...|+... ....+.|+.++...|
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC
Confidence 3446889999998899999888876 466788999999999999999999999998866532 223344778999999
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
++++|+..++..-.- +-.+.++..+|.+|..+|++++|+..|++||
T Consensus 100 ~~d~Al~~L~~~~~~---------------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 100 QYDEALATLQQIPDE---------------------------AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHhccCc---------------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999652110 1122477889999999999999999999985
No 103
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.89 E-value=2.8e-07 Score=88.30 Aligned_cols=174 Identities=19% Similarity=0.160 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH-HHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES-LDNVLL 96 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~---~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~-l~~aLg 96 (479)
.....+...+..|++++|+..|.+.+...|. ...+.+.+|.++...|++++|+..|++++...|+++... ....+|
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3445566788999999999999999986554 568899999999999999999999999999999976421 112233
Q ss_pred HHH-----------HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 97 ELY-----------KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 97 ~lY-----------~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
.++ ..++...+|+..|+..++.+|+..- ...|... ...+...-..--+.+|..|.+.|.|
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-----~~~A~~~----l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-----AEEAKKR----LAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-----HHHHHHH----HHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHcccH
Confidence 333 3344567899999999999887431 1111100 0122222233447789999999999
Q ss_pred HHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH
Q 011721 166 ESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 166 deA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~ 203 (479)
..|+..|+.+++--|+.. .++. |+.+|..+|..+.|..
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999999997 3455 9999999999885543
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.88 E-value=7.2e-08 Score=110.08 Aligned_cols=152 Identities=14% Similarity=0.026 Sum_probs=123.4
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC
Q 011721 48 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG 127 (479)
Q Consensus 48 l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~ 127 (479)
.+|.+..++..|..++...+++++|++.++.++..+|+....++. +|.+|...+++++|... .++.+.+....
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~--~G~l~~q~~~~~~~~lv--~~l~~~~~~~~--- 98 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYI--SGILSLSRRPLNDSNLL--NLIDSFSQNLK--- 98 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHH--HHHHHHhhcchhhhhhh--hhhhhcccccc---
Confidence 678888999999999999999999999999999999998766554 45689999999988877 77766443211
Q ss_pred CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HH
Q 011721 128 KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LL 205 (479)
Q Consensus 128 k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~ 205 (479)
..+..+.-. .+.-.+++..+++.||.+|.++|++++|...|+++|+++|+|+.++| +|..|... ++++|+. +.
T Consensus 99 ---~~~ve~~~~-~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 99 ---WAIVEHICD-KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred ---hhHHHHHHH-HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 011111111 12224566679999999999999999999999999999999999998 99999999 9999999 88
Q ss_pred HHHHhc
Q 011721 206 QAVRAS 211 (479)
Q Consensus 206 kAL~l~ 211 (479)
+|+...
T Consensus 174 KAV~~~ 179 (906)
T PRK14720 174 KAIYRF 179 (906)
T ss_pred HHHHHH
Confidence 998763
No 105
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.88 E-value=2.8e-08 Score=92.26 Aligned_cols=91 Identities=16% Similarity=0.023 Sum_probs=84.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
......|++++|+.+|+.....+|.+...+++||.++..+|+|++||.+|..++.++|+++....+ +|.+|...|+.+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~--ag~c~L~lG~~~ 120 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA--AAECYLACDNVC 120 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHcCCHH
Confidence 456678999999999999999999999999999999999999999999999999999999987665 568999999999
Q ss_pred HHHHHHHHHHHhc
Q 011721 107 EEIELLKRKLKKT 119 (479)
Q Consensus 107 eAie~lekALkl~ 119 (479)
.|+..|+.|+...
T Consensus 121 ~A~~aF~~Ai~~~ 133 (157)
T PRK15363 121 YAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999984
No 106
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.86 E-value=1.1e-07 Score=106.49 Aligned_cols=183 Identities=13% Similarity=0.005 Sum_probs=133.6
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--cCCChHHHHHH
Q 011721 16 PAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--CADDSQESLDN 93 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--~P~da~~~l~~ 93 (479)
+.+...|-....++...|++++|...|.+..+ + +..+|+.|...|.+.|+.++|++.|++++.. .|+. ...+
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~---~T~~ 430 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH---VTFL 430 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH---HHHH
Confidence 34445666677888889999999999987654 2 3457889999999999999999999998765 4542 2234
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---chhHHh------cCC--CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKK---TEEVIA------CGG--KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl---~p~~la------~~~--k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l 162 (479)
.+...+...|+.++|..+|+...+. .|.... ... ...+.|...... ....| +..+|..|..++...
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~--~~~~p-~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR--APFKP-TVNMWAALLTACRIH 507 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH--CCCCC-CHHHHHHHHHHHHHc
Confidence 5567889999999999999998764 232110 000 122233222111 11223 335788888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 011721 163 NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQA 207 (479)
Q Consensus 163 GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kA 207 (479)
|+++.|+..+++.++++|++...|. |+.+|...|++++|..+.+.
T Consensus 508 g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred CCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999888888 99999999999999994443
No 107
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.86 E-value=6.5e-07 Score=97.60 Aligned_cols=212 Identities=17% Similarity=0.051 Sum_probs=149.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH---
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR--- 101 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k--- 101 (479)
...+....|++++|+.++.+....-.+....+...|.+|..+|++++|...|+.++..+|++...+ .+|..+...
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy--~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYY--RGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH--HHHHHHHhhhcc
Confidence 335667789999999999887776666677888899999999999999999999999999986433 223333211
Q ss_pred --cCCHHHHHHHHHHHHHhchhHHh-----cCCCchH----HH-------------------Hhhc---hhHH----H--
Q 011721 102 --SKRIEEEIELLKRKLKKTEEVIA-----CGGKSTK----IA-------------------RSQG---RKTQ----I-- 142 (479)
Q Consensus 102 --lGr~deAie~lekALkl~p~~la-----~~~k~~~----~A-------------------~~~g---~k~~----l-- 142 (479)
....+.-.+.|.+....+|.... +.-.... .+ ...+ .+.. +
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 12466777888887777765211 1100000 00 0000 0000 0
Q ss_pred ----hh--------------hhhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHH
Q 011721 143 ----TL--------------VQEL--SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 143 ----~L--------------~pe~--~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEA 201 (479)
.+ .+.. ..+++.|+..|...|++++|+.+..+||+..|..++.|. .|.+|-..|++.+|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 00 1111 256799999999999999999999999999999999998 99999999999999
Q ss_pred HH-HHHHHHhcCCCccchHHHH------HHHHHHHHHHHHHHhh
Q 011721 202 KS-LLQAVRASSRNEKMDESYA------KSFEHASLMLTELESQ 238 (479)
Q Consensus 202 i~-l~kAL~l~P~n~~a~~~~~------k~~~rA~eaL~el~~a 238 (479)
.. +..|-.+|+.|-.+.--.. ...+.|.+++..|.+.
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 99 8899999998755422111 3356777777777654
No 108
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.86 E-value=1.6e-07 Score=94.37 Aligned_cols=175 Identities=18% Similarity=0.177 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC--ChH--HH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINA----GDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD--DSQ--ES 90 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l----~p~--~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~--da~--~~ 90 (479)
-|..++..+-..+++++|...|.+|... +.. ...++...+.+|... ++++|+.+|++++.+.-. +.. +.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 5667777888899999999999999762 222 234566777777666 999999999999887432 221 23
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 91 LDNVLLELYKRS-KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 91 l~~aLg~lY~kl-Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
...-++.+|... |++++|+++|++|+.++..... .-.....+..+|.++..+|+|++|+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--------------------~~~a~~~~~~~A~l~~~l~~y~~A~ 175 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--------------------PHSAAECLLKAADLYARLGRYEEAI 175 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---------------------HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------------------hhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 334467899998 9999999999999998654211 0011247889999999999999999
Q ss_pred HHHHHHHHcCCCC------H-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 170 RYYMKALSLESDK------N-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 170 ~~yrKALeLdPdn------a-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..|+++....-++ . ..+. .+.|++..|++-.|.. +.+....+|....
T Consensus 176 ~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 176 EIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 9999999864322 1 2334 7889999999999999 7778888886543
No 109
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=5e-07 Score=95.98 Aligned_cols=141 Identities=21% Similarity=0.147 Sum_probs=121.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
..++..++++.|+..+...|+..|++...+...+.++...++.++|++.+++++.++|+.+ .+...++.+|.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--LLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHhcCChH
Confidence 3567789999999999999999999998888899999999999999999999999999975 34455779999999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~ 186 (479)
+|+..+++.+.-+ |+++..|..||.+|..+|+-.+|...+
T Consensus 392 eai~~L~~~~~~~--------------------------p~dp~~w~~LAqay~~~g~~~~a~~A~-------------- 431 (484)
T COG4783 392 EAIRILNRYLFND--------------------------PEDPNGWDLLAQAYAELGNRAEALLAR-------------- 431 (484)
T ss_pred HHHHHHHHHhhcC--------------------------CCCchHHHHHHHHHHHhCchHHHHHHH--------------
Confidence 9999999888763 556679999999999999998887654
Q ss_pred HHHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 187 NLAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 187 nLG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
+..|.-.|++++|+. +..+.+..
T Consensus 432 --AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 432 --AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 455677799999999 77776655
No 110
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.84 E-value=2e-07 Score=101.64 Aligned_cols=93 Identities=10% Similarity=-0.026 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHc--CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHH
Q 011721 164 DYESAERYYMKALSL--ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELE 236 (479)
Q Consensus 164 dydeA~~~yrKALeL--dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~ 236 (479)
+...|....++++.+ +|.++.++. +|.++...|++++|.. +.+|+.++|+ ..+.. ......++..+++..++
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666666664 555565565 7777777777777777 7777777763 22111 11122355666666677
Q ss_pred hhhhcCCCChhhHHHHHhhhh
Q 011721 237 SQSMLQPTDYGEDKRKKILSS 257 (479)
Q Consensus 237 ~a~~~~P~~~~~~~~~~~~~~ 257 (479)
.++.++|.++...-.+|++..
T Consensus 478 ~A~~L~P~~pt~~~~~~~~f~ 498 (517)
T PRK10153 478 TAFNLRPGENTLYWIENLVFQ 498 (517)
T ss_pred HHHhcCCCCchHHHHHhcccc
Confidence 777777776655555555543
No 111
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.82 E-value=8.9e-08 Score=95.98 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+++.||.+|+.+|+|++|+.+|++++...|+++ +++. +|.++..+|++++|+. +.+.+...|+.
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 444555555555555555555555555544432 2333 4555555555555555 44444444443
No 112
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.81 E-value=3.6e-08 Score=80.83 Aligned_cols=83 Identities=28% Similarity=0.258 Sum_probs=50.7
Q ss_pred CCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhh
Q 011721 66 LDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLV 145 (479)
Q Consensus 66 ~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~ 145 (479)
+|+|++|+..|++++...|.+....+.+.++.+|.++|++++|+..+++ +...
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------------------------- 54 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------------------------- 54 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------------------------
Confidence 5667777777777777776432222233356677777777777777766 3332
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+.+...++.+|.+|.++|+|++|+.+|++|
T Consensus 55 ~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 55 PSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 223345566677778888888887777765
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=7.8e-08 Score=108.35 Aligned_cols=178 Identities=16% Similarity=0.098 Sum_probs=139.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIE 110 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie 110 (479)
..++...|+..|-+++++++....++..||.+|..-.+...|.++|.++.++++.++.+. -+++++|.....+++|.+
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaa--aa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAA--AASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhH--HHHHHHhhccccHHHHHH
Confidence 457799999999999999999999999999999999999999999999999999987654 345699999999999999
Q ss_pred HHHHHHHhchhHHhcCC-----------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 111 LLKRKLKKTEEVIACGG-----------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 111 ~lekALkl~p~~la~~~-----------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
....+-+..|....... ...-.+..+++. .+..+|.+.+.|..||.+|...|.|.-|++.|.||..++
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs-ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS-ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH-HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 97766666554332110 001112212111 156678888899999999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 180 SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
|++-.... .+.....+|+|++|+. +..-+...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 98876655 8888888999999988 66555443
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.81 E-value=5.8e-07 Score=86.13 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=109.6
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
.+.+++..|..+.+.|+|++|++.|++++...|..... ...+.++.+|.+.|++++|+..|++.++.+|...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~------- 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP------- 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-------
Confidence 46788999999999999999999999999999986432 2334577899999999999999999999988743
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCH---HH-----------
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQQ-----------NDYESAERYYMKALSLESDKN---KQ----------- 185 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l-----------GdydeA~~~yrKALeLdPdna---~a----------- 185 (479)
..+.+++.+|.+++.+ +...+|+..|+..+..-|++. .+
T Consensus 77 ----------------~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 77 ----------------KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp ----------------THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred ----------------chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 2335778888876554 445699999999999999983 11
Q ss_pred ----HHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 186 ----CNLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 186 ----~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.+|..|.+.|.+..|+. +...+...|+...
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence 227899999999999999 8889999998654
No 115
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.80 E-value=1.8e-08 Score=82.60 Aligned_cols=82 Identities=30% Similarity=0.358 Sum_probs=68.0
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
.+|+++.|+.+|++++...|.. + +..++++||.+|+++|+|++|+..+++ +.++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~-----------------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~ 55 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTN-----------------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP 55 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGT-----------------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCC-----------------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC
Confidence 3689999999999999986531 1 234778899999999999999999999 99999
Q ss_pred CCHHHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 181 DKNKQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 181 dna~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
.+..... +|.||..+|++++|+. +.++
T Consensus 56 ~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 56 SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 8876655 9999999999999999 6654
No 116
>PLN03077 Protein ECB2; Provisional
Probab=98.80 E-value=3.4e-07 Score=104.88 Aligned_cols=174 Identities=13% Similarity=0.028 Sum_probs=118.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--CADDSQESLDNVLLELYKR 101 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--~P~da~~~l~~aLg~lY~k 101 (479)
....++...|+.++|...|... +.+..+|..|...|...|+.++|+++|+++... .|+... .+.+...|.+
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T---~~~ll~a~~~ 601 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT---FISLLCACSR 601 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc---HHHHHHHHhh
Confidence 3456677888999998888775 445667888888999999999999999888764 455432 2334467888
Q ss_pred cCCHHHHHHHHHHHHHh---chhHHh------cCC--CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 102 SKRIEEEIELLKRKLKK---TEEVIA------CGG--KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 102 lGr~deAie~lekALkl---~p~~la------~~~--k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
.|++++|..+|+...+. .|.... ... ...+.|....+. +.+.|+ ..+|..|-.++...|+.+.|+.
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~--m~~~pd-~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK--MPITPD-PAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH--CCCCCC-HHHHHHHHHHHHHcCChHHHHH
Confidence 89999999999988743 232110 000 111222221111 123343 3466666667778888888888
Q ss_pred HHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 011721 171 YYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQA 207 (479)
Q Consensus 171 ~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kA 207 (479)
..+++++++|++...|. |+.+|...|++++|..+.+.
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 88888888888887777 88888888888888884443
No 117
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6.2e-08 Score=100.95 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=85.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|+.|.+.|+|..|+..|++|+........+.......+. .-...++.||+.+|.++++|.+|+.+..++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~-----------~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAE-----------ALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHH-----------HHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 466788888888888888888763321111110000000 011138899999999999999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|+++|+|..++. -|.+|+.+|+|+.|+. +.++++++|+|..
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 999999999988 9999999999999999 9999999999954
No 118
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.79 E-value=2.5e-08 Score=77.54 Aligned_cols=63 Identities=25% Similarity=0.332 Sum_probs=55.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
++.+|...|++++|+..|+++++.+| ++..+++.+|.++..+|++++|+.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P--------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP--------------------------DNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST--------------------------THHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46788999999999999999998854 4556999999999999999999999999
Q ss_pred HHHcCCCCH
Q 011721 175 ALSLESDKN 183 (479)
Q Consensus 175 ALeLdPdna 183 (479)
+++++|+++
T Consensus 57 a~~~~P~~p 65 (65)
T PF13432_consen 57 ALELDPDNP 65 (65)
T ss_dssp HHHHSTT-H
T ss_pred HHHHCcCCC
Confidence 999999985
No 119
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.73 E-value=7.3e-07 Score=89.57 Aligned_cols=191 Identities=22% Similarity=0.160 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC--CChH--HHHHHHHHHHHHHcCCHHHHH
Q 011721 34 DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA--DDSQ--ESLDNVLLELYKRSKRIEEEI 109 (479)
Q Consensus 34 d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P--~da~--~~l~~aLg~lY~klGr~deAi 109 (479)
++++|..+|.+ -|..|...|++++|.++|.++....- ++.. +....-.+.+|.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~--------------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEK--------------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 56666666655 47788899999999999988765432 2211 11112234666655 999999
Q ss_pred HHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC--CCCH---
Q 011721 110 ELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ-NDYESAERYYMKALSLE--SDKN--- 183 (479)
Q Consensus 110 e~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l-GdydeA~~~yrKALeLd--Pdna--- 183 (479)
.+|++|+.++-.... .. .-+.++.++|.+|... |++++|+++|++|+++- -+..
T Consensus 95 ~~~~~A~~~y~~~G~----~~----------------~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a 154 (282)
T PF14938_consen 95 ECYEKAIEIYREAGR----FS----------------QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA 154 (282)
T ss_dssp HHHHHHHHHHHHCT-----HH----------------HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhcCc----HH----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH
Confidence 999999998643210 11 1235889999999999 99999999999999982 2222
Q ss_pred -HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc----chH-------HHH--HHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 184 -KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK----MDE-------SYA--KSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 184 -~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~----a~~-------~~~--k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
..+. +|.++..+|+|++|+. +.+.....-++.. +.. .++ .....|.+.+..+....+.-.++-+
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 2344 9999999999999999 7666654332221 111 111 2344566666655544333334445
Q ss_pred hHHHHHhhhhhh
Q 011721 248 EDKRKKILSSCT 259 (479)
Q Consensus 248 ~~~~~~~~~~~~ 259 (479)
-.+...|+..+.
T Consensus 235 ~~~~~~l~~A~~ 246 (282)
T PF14938_consen 235 YKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666666665
No 120
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.72 E-value=1.7e-06 Score=96.92 Aligned_cols=179 Identities=10% Similarity=-0.022 Sum_probs=118.0
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--cCCChHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--CADDSQESLDNVLLE 97 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--~P~da~~~l~~aLg~ 97 (479)
..|-....++...|++++|...|... .+.+..+|+.|...|.+.|++++|++.|+++... .|+. .....++.
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~---~t~~~ll~ 333 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ---FTFSIMIR 333 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHH
Confidence 34445567777888888888888754 3345567888888888888888888888887654 3432 22334557
Q ss_pred HHHHcCCHHHHHHHHHHHHHhch--hH------HhcC--CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTE--EV------IACG--GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p--~~------la~~--~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
.|.+.|++++|...+..+++..- .. +... ....+.|...+. .+...+...|+.|...|.+.|+.++
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~----~m~~~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD----RMPRKNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH----hCCCCCeeeHHHHHHHHHHcCCHHH
Confidence 78888888888888888877531 10 0000 011112222111 1122344578888889999999999
Q ss_pred HHHHHHHHHHc--CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 168 AERYYMKALSL--ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 168 A~~~yrKALeL--dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
|++.|++.++. .|+. ..++ +-.++...|.+++|.. +.....
T Consensus 410 A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 410 AVEMFERMIAEGVAPNH-VTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHHHHHhCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999988774 4553 3455 7788888999999999 444443
No 121
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.5e-07 Score=92.33 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhH
Q 011721 69 SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQEL 148 (479)
Q Consensus 69 ydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~ 148 (479)
.++-+.-++.-+..+|+|++.+. .||.+|..+|+++.|...|.+|+++.| ++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~--~Lg~~ym~~~~~~~A~~AY~~A~rL~g--------------------------~n 189 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWD--LLGRAYMALGRASDALLAYRNALRLAG--------------------------DN 189 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcchhHHHHHHHHHHHhCC--------------------------CC
Confidence 44455556666667777766543 355677777777777777777777633 33
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 149 SRISGNLAWAYLQQ---NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 149 ~~al~nLG~ay~~l---GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++++..+|.+++.+ ....+|...|++|+.+||++..+.. ||..++++|+|.+|+. ...-+...|.+..
T Consensus 190 ~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 190 PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 44666666665543 3556788888888888888887766 8888888888888888 5666777776543
No 122
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.71 E-value=5.5e-06 Score=97.27 Aligned_cols=178 Identities=8% Similarity=-0.024 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----cCCChHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINA--GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL----CADDSQESLDNV 94 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l--~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l----~P~da~~~l~~a 94 (479)
.|-.....+...|++++|+.+|...... .|+ ..+|..|...|.+.|++++|.+.|..+... .|+ ....+.
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD---~vTyna 584 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD---HITVGA 584 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc---HHHHHH
Confidence 3334445556666666666666665542 233 345666666666667777777766666542 333 223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhch--hHHhc--------CCCchHHHHhhchhHH-HhhhhhHHHHHHHHHHHHHHcC
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTE--EVIAC--------GGKSTKIARSQGRKTQ-ITLVQELSRISGNLAWAYLQQN 163 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p--~~la~--------~~k~~~~A~~~g~k~~-l~L~pe~~~al~nLG~ay~~lG 163 (479)
++..|.+.|++++|++.|++..+... ....+ .......|...+.... ..+.|+ ...|..|..+|.+.|
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC
Confidence 55666777777777777766665421 10000 0011112221111100 011222 234555555555555
Q ss_pred CHHHHHHHHHHHHHcCCC-CHHHHH-HHHHHHHcCCHHHHHH
Q 011721 164 DYESAERYYMKALSLESD-KNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 164 dydeA~~~yrKALeLdPd-na~a~n-LG~~L~~lGr~dEAi~ 203 (479)
++++|++.|++.++.... +...|+ |..+|.+.|++++|+.
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 555555555555554321 233444 5555555555555555
No 123
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.71 E-value=7.5e-08 Score=100.44 Aligned_cols=188 Identities=18% Similarity=0.129 Sum_probs=122.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCChHHHHHHHHH----HHHhcCCChHHHHHHHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKS----FRCLCADDSQESLDNVL 95 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~----~Al~~LA~vL~~~GrydEAie~lek----al~l~P~da~~~l~~aL 95 (479)
..+.-....|++...+.+|++||+.+-.+- ..|..||.+|..+++|++|+++-.. +..+...-.++...-.|
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 344556678999999999999998766543 3466799999999999999987543 12222222222222236
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHH-------hcC---------CC------------chHHHHhhc----hhHH--
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVI-------ACG---------GK------------STKIARSQG----RKTQ-- 141 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~l-------a~~---------~k------------~~~~A~~~g----~k~~-- 141 (479)
|+++...|.|++|+.+..+-|.+..+.. +++ ++ ....+.... +..+
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 7888889999999999888887754321 111 00 001111100 0000
Q ss_pred Hhhh--hhH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 142 ITLV--QEL----SRISGNLAWAYLQQNDYESAERYYMKALSLESDKN------KQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 142 l~L~--pe~----~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna------~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
+++- -.+ -+++.+||+.|+-+|+|++|+.+.+.-|+|..... .++. ||.|++-+|+|+.|++ |..+
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 1111 111 16789999999999999999999999888876654 2343 9999999999999999 7776
Q ss_pred HHhc
Q 011721 208 VRAS 211 (479)
Q Consensus 208 L~l~ 211 (479)
+.+.
T Consensus 262 l~LA 265 (639)
T KOG1130|consen 262 LNLA 265 (639)
T ss_pred HHHH
Confidence 5443
No 124
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.70 E-value=7.5e-06 Score=71.16 Aligned_cols=167 Identities=22% Similarity=0.197 Sum_probs=114.5
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAIN--AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~--l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~ 97 (479)
..+..........+++..++..+..++. ..+.....+..++.++...+.+.+|++.+..++...+.+...... ...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL--LAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHH--HHH
Confidence 4445566677788999999999999887 677777888999999999999999999999999887775322222 223
Q ss_pred -HHHHcCCHHHHHHHHHHHHHhchh--HHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 98 -LYKRSKRIEEEIELLKRKLKKTEE--VIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 98 -lY~klGr~deAie~lekALkl~p~--~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
+|...|++++|+..|.+++...+. ... ..+..++..+...+++++|+..+.+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELA-------------------------EALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchH-------------------------HHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 788999999999999999886652 111 1333334445555666666666666
Q ss_pred HHHcCCC-CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 175 ALSLESD-KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 175 ALeLdPd-na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
++...+. ....+. ++.++...+++++|+. +..++...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 6666655 344443 5666666666666666 5555555554
No 125
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.70 E-value=2.1e-05 Score=68.35 Aligned_cols=168 Identities=27% Similarity=0.263 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH-HHHHCCChHHHHHHHHHHHHhcCC-ChHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAV-VMKQLDRSEEAIEAIKSFRCLCAD-DSQESLDNVLLEL 98 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~-vL~~~GrydEAie~lekal~l~P~-da~~~l~~aLg~l 98 (479)
.+...+......+++..|+..+.+++...+.........+. ++...|++++|+..|.+++...|. .........++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence 33344445555566677777777776655544333344444 677777777777777776665552 1111112223344
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
+...+++++|+..+.+++...+.. ...++..++..+...+++++|+..+.+++..
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD-------------------------DAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc-------------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 566677777777777776664331 1125666777777777777777777777777
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
.|.....+. ++..+...+.+++|.. +.+++...|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 232 DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 776544444 6666665566777776 6666666664
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.70 E-value=3e-06 Score=83.90 Aligned_cols=143 Identities=10% Similarity=0.032 Sum_probs=117.0
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCc
Q 011721 51 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES-LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKS 129 (479)
Q Consensus 51 ~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~-l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~ 129 (479)
..+..++..|..+...|+|++|++.|++++...|..+... ..+.++.+|.+.|++++|+..|++.++.+|..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~------- 102 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH------- 102 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC-------
Confidence 3566788899999999999999999999999999875432 23457789999999999999999999998874
Q ss_pred hHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHHcCCCCHH---H---
Q 011721 130 TKIARSQGRKTQITLVQELSRISGNLAWAYLQQN------------------DYESAERYYMKALSLESDKNK---Q--- 185 (479)
Q Consensus 130 ~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG------------------dydeA~~~yrKALeLdPdna~---a--- 185 (479)
|+.+.+++.+|.++..++ ...+|+..|++.+..-|+..- +
T Consensus 103 ----------------~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 103 ----------------PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred ----------------CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 334568899998875554 135788999999999999831 1
Q ss_pred ------------HHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 186 ------------CNLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 186 ------------~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+..|..|.+.|++..|+. +...+...|+...
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA 210 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch
Confidence 126888999999999999 9999999998654
No 127
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.69 E-value=2.1e-06 Score=100.69 Aligned_cols=96 Identities=7% Similarity=0.040 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDR-VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~-~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
.|.....++...++++.|..+|....+.+.. +...+..|-..|.+.|++++|.++|+++...... +.....+.++..|
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy 517 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Confidence 3444445555666677777666666654322 2345556666666666666666666666554321 0112233445566
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 011721 100 KRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 100 ~klGr~deAie~lekALk 117 (479)
.+.|++++|+..|.+...
T Consensus 518 ~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHCcCHHHHHHHHHHHHH
Confidence 666666666666666544
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=3.3e-07 Score=100.87 Aligned_cols=197 Identities=17% Similarity=0.116 Sum_probs=139.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
....+++..|=...|+..|++. ..+-....+|...|+..+|.++..+.++..|+ + . +|.-+|
T Consensus 403 ~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d-~--~-------lyc~LG 464 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD-P--R-------LYCLLG 464 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-c--h-------hHHHhh
Confidence 3455677778888888888762 34566788899999999999998888884443 2 2 334444
Q ss_pred CHHHHHHHHHHHHHhchhHH-------h---cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 104 RIEEEIELLKRKLKKTEEVI-------A---CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 104 r~deAie~lekALkl~p~~l-------a---~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
++-.=-.+|++|.++..... + +...+...+..|.+.. +.++|-....|+.+|.+..+++++..|..+|.
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~s-l~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERS-LEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHH-hhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 44444445555554432211 1 0112222333333221 56677777899999999999999999999999
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH------HHHHHHHHHHHHHHHHHhhh
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE------SYAKSFEHASLMLTELESQS 239 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~------~~~k~~~rA~eaL~el~~a~ 239 (479)
..+.++|++..++| |+.+|+.+|+..+|.. +.+|++-+-++..+.+ .....++.|.++...+..--
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999999998 9999999999999999 8999998866655422 12456778887777766543
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=5.9e-06 Score=82.03 Aligned_cols=163 Identities=13% Similarity=-0.023 Sum_probs=110.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcC---C------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACG---G------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~---~------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
.+....|+.+.|..++++.....|...... + ...+.|...+... ++-+|.+..++-.--.+...+|+--+
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~l-L~ddpt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESL-LEDDPTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHH-hccCcchhHHHHHHHHHHHHcCCcHH
Confidence 345667999999999999888776532100 0 1112222211111 33355566666666667788999999
Q ss_pred HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc----hH-HH-HHHHHHHHHHHHHHHhhh
Q 011721 168 AERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM----DE-SY-AKSFEHASLMLTELESQS 239 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a----~~-~~-~k~~~rA~eaL~el~~a~ 239 (479)
|++.+-.-++.-+.|.+++. |+.+|...|+|++|.- +++.+-+.|-++-. .+ .+ ........-..+.+.+++
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999998 9999999999999999 78888999987642 11 11 122344555666777888
Q ss_pred hcCCCChhhHHHHHhhhhhhhhc
Q 011721 240 MLQPTDYGEDKRKKILSSCTYIN 262 (479)
Q Consensus 240 ~~~P~~~~~~~~~~~~~~~~~i~ 262 (479)
.++|.+.. .-..|+..|+.|.
T Consensus 219 kl~~~~~r--al~GI~lc~~~la 239 (289)
T KOG3060|consen 219 KLNPKNLR--ALFGIYLCGSALA 239 (289)
T ss_pred HhChHhHH--HHHHHHHHHHHHH
Confidence 88884332 4446666666554
No 130
>PRK15331 chaperone protein SicA; Provisional
Probab=98.67 E-value=3.1e-07 Score=85.87 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFE 226 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~ 226 (479)
.++++.||.++..+|+|++|+..|--|..++++++.... .|.||+.+|+.++|+. +..++. .|.+.. --.
T Consensus 71 ~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~-------l~~ 142 (165)
T PRK15331 71 PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES-------LRA 142 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH-------HHH
Confidence 347788899999999999999999999999999986655 9999999999999999 444554 555432 336
Q ss_pred HHHHHHHHHHhhhh
Q 011721 227 HASLMLTELESQSM 240 (479)
Q Consensus 227 rA~eaL~el~~a~~ 240 (479)
+|..+|..+.....
T Consensus 143 ~A~~~L~~l~~~~~ 156 (165)
T PRK15331 143 KALVYLEALKTAET 156 (165)
T ss_pred HHHHHHHHHHcccc
Confidence 78888877665543
No 131
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.67 E-value=5.7e-07 Score=90.22 Aligned_cols=110 Identities=12% Similarity=0.130 Sum_probs=94.9
Q ss_pred HHHHHHHHHHH-HHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 53 DSALKDMAVVM-KQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 53 ~~Al~~LA~vL-~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
....+..|..+ ...|+|++|+..|+.++..+|++.. ....+.+|.+|...|++++|+..|+++++.+|.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--------- 212 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--------- 212 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 35677778776 6689999999999999999999853 233456889999999999999999999998775
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
.+..+++++.+|.+|..+|++++|+..|+++++..|+...+
T Consensus 213 --------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 213 --------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred --------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 34578899999999999999999999999999999998743
No 132
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.2e-07 Score=95.72 Aligned_cols=131 Identities=17% Similarity=0.116 Sum_probs=102.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCC----Ch---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCAD----DS---------QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV 122 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~----da---------~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~ 122 (479)
...-|..|.+.|+|..|+..|++++..-.. +. -...++.|+.+|.++++|.+|+...+++|.+.|.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~- 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN- 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-
Confidence 345688888888888888888887665331 10 1122344678999999999999999999998544
Q ss_pred HhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHH
Q 011721 123 IACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 123 la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEA 201 (479)
+..++|..|.+|..+|+|+.|+..|++|++++|+|-.+.+ |..|-....++.+.
T Consensus 290 -------------------------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 290 -------------------------NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred -------------------------chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4459999999999999999999999999999999988887 88888887777776
Q ss_pred HH--HHHHHHhcC
Q 011721 202 KS--LLQAVRASS 212 (479)
Q Consensus 202 i~--l~kAL~l~P 212 (479)
.. |.+.+..-+
T Consensus 345 ekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 345 EKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHhhccc
Confidence 55 445554433
No 133
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.65 E-value=1.1e-07 Score=74.57 Aligned_cols=66 Identities=24% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhch
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK-RIEEEIELLKRKLKKTE 120 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG-r~deAie~lekALkl~p 120 (479)
+.++..+|.++...|++++|+..|.+++.++|+++...++ +|.+|..+| ++++|+..|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~--~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYN--LGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHH--HHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566677777777777777777777777777776554433 456677777 57777777777777765
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.2e-06 Score=88.40 Aligned_cols=71 Identities=25% Similarity=0.156 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC---CHHHHHH-HHHHHHhcCCCcc
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN---RIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG---r~dEAi~-l~kAL~l~P~n~~ 216 (479)
|++.+-|..||.+|+.+|+++.|+..|++|+.|.|++++.+. +|.+++.+. .-.+|.. +.+++.++|.|..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 334445556666666666666666666666666666665555 555554432 2344444 5555666665554
No 135
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.63 E-value=3.6e-06 Score=92.02 Aligned_cols=181 Identities=15% Similarity=0.063 Sum_probs=141.1
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
-+.|++.--|...+-..++.+..-..|-.+.-..+|++|+..-|+....++..+..+...|+..+|..++.++++.+|++
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pns 617 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNS 617 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc
Confidence 35566777788788888888877788889999999999999888888778888888888999999999999999999986
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
-+.++ +-..+......++.|..+|.+|-...+.. ++|+.-+.+..-+++.+
T Consensus 618 eeiwl--aavKle~en~e~eraR~llakar~~sgTe---------------------------Rv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 618 EEIWL--AAVKLEFENDELERARDLLAKARSISGTE---------------------------RVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHH--HHHHHhhccccHHHHHHHHHHHhccCCcc---------------------------hhhHHHhHHHHHhhhHH
Confidence 55443 23366777888999999999998864321 25566666667777777
Q ss_pred HHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 167 SAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|+.+++.+|+.-|+....|. ||.++..+++.+.|.. |...+...|+..-
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 777777777777777777766 7777777777777777 7777777776643
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.63 E-value=4.2e-07 Score=102.61 Aligned_cols=185 Identities=14% Similarity=-0.085 Sum_probs=133.6
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l 91 (479)
++..|.-...|...|+++-..-|...|...|.+|..+++.+..+...++..|......++|..+...+-+..|...-...
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n 564 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN 564 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence 45556556677778887765568899999999999999998888888888888888888888886655555553221100
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC---------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG---------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~---------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l 162 (479)
-.-.|-.|.+.+++.+|+..|+-|++.+|+...... ..+..|...+.++ ..++|+.....+-.+.+...+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA-s~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA-SLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh-HhcCcHhHHHHHHHHHHHHHh
Confidence 011456677888888888888888888876532110 1111222222222 467788888889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCC
Q 011721 163 NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNR 197 (479)
Q Consensus 163 GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr 197 (479)
|+|.+|+..+...+..........+ ||.+++..-.
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ak 679 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAK 679 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999988877777778 9999987643
No 137
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.62 E-value=4.8e-07 Score=100.08 Aligned_cols=134 Identities=16% Similarity=0.047 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
.+...|.++...+.-++|.-++.++..++|-.+.. .+..|.++...|.+.+|.+.|..|+.++|..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~--~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------------ 717 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASV--YYLRGLLLEVKGQLEEAKEAFLVALALDPDH------------ 717 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHH--HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------------
Confidence 34456677777777788877887777777765433 2334567777888888888888888775543
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER--YYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~--~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
......||.+|.+.|+-.-|.. .+..|+.+||.++.+|. ||.++..+|+.++|.. |..|+++
T Consensus 718 --------------v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 718 --------------VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred --------------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 3467778888888888777777 88888888888887776 8888888888888888 6667888
Q ss_pred cCCCcc
Q 011721 211 SSRNEK 216 (479)
Q Consensus 211 ~P~n~~ 216 (479)
++.++.
T Consensus 784 e~S~PV 789 (799)
T KOG4162|consen 784 EESNPV 789 (799)
T ss_pred ccCCCc
Confidence 777654
No 138
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.61 E-value=1.2e-05 Score=83.78 Aligned_cols=69 Identities=20% Similarity=0.136 Sum_probs=59.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 142 ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 142 l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~nLG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
+...|+++.++..||..|++.+.|.+|..+|+.|+...|+..+...||.+|.++|+..+|.+ ..+++.+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 45567888899999999999999999999999999999987665559999999999999999 7777643
No 139
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.59 E-value=3.9e-06 Score=91.61 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=52.7
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
++.+.|+......-.|-..-..|+.++|..+.+.++..++...-.+..+|.++....+|+|||++|+.|+.+.|+|.+..
T Consensus 33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qil 112 (700)
T KOG1156|consen 33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQIL 112 (700)
T ss_pred HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 34444444333333332333345555555555555555555555555555555555555555555555555555554443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTE 120 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p 120 (479)
.++++ +-.++++++-....-.+.|++.|
T Consensus 113 rDlsl--LQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 113 RDLSL--LQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHH--HHHHHHhhhhHHHHHHHHHHhhh
Confidence 33222 33344444444444444444444
No 140
>PLN03077 Protein ECB2; Provisional
Probab=98.58 E-value=1.3e-05 Score=91.98 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH--hcCCCccch-----HHHHH
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR--ASSRNEKMD-----ESYAK 223 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~--l~P~n~~a~-----~~~~k 223 (479)
+.|-..|.+.|++++|...|... +.+...|+ |...|...|+.++|+. +.+... ..|+...-. ..+..
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 34445666677777777766664 33455666 6667777777777777 444443 234332210 02224
Q ss_pred HHHHHHHHHHHHHhhhhcCCC
Q 011721 224 SFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 224 ~~~rA~eaL~el~~a~~~~P~ 244 (479)
.++++.+++..+.......|+
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCc
Confidence 456666666666655555564
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.58 E-value=1.1e-06 Score=92.81 Aligned_cols=125 Identities=24% Similarity=0.236 Sum_probs=106.5
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhc
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g 137 (479)
.|-.++...+++++|++.|+++...+|+. ...++.+|...++..+|+..+.++|...|.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev-----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~---------------- 232 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEV-----AVLLARVYLLMNEEVEAIRLLNEALKENPQ---------------- 232 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcH-----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC----------------
Confidence 35566777899999999999999999862 234678888999999999999999977544
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011721 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQAVRASSR 213 (479)
Q Consensus 138 ~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P~ 213 (479)
+..++...+..|+..++|+.|+.+.++|+.+.|++-..|. |+.+|..+|++++|+..+.++-..+.
T Consensus 233 ----------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 233 ----------DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred ----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 3457888899999999999999999999999999999888 99999999999999986666655543
No 142
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.55 E-value=1.5e-06 Score=77.49 Aligned_cols=92 Identities=28% Similarity=0.204 Sum_probs=70.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
++.++..+|+.++|+.+|++++..-.. .+.-.+++..+|..|..+|++++|+..+++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-----------------------~~~~~~a~i~lastlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLS-----------------------GADRRRALIQLASTLRNLGRYDEALALLEE 63 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-----------------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345566667777777777777664111 011224889999999999999999999999
Q ss_pred HHHcCCC---CHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 175 ALSLESD---KNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 175 ALeLdPd---na~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
++.-.|+ +..... ++.++...|+.+||+. ++.++.
T Consensus 64 ~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 64 ALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999898 444444 9999999999999999 888875
No 143
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.55 E-value=2.5e-07 Score=98.19 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=63.4
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ----CNLAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a----~nLG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
..+|+++.+++|+|.+|..+|+|++|+.+|++||+++|++..+ ||+|.+|..+|++++|+. +.+|+.+.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3478888999999999999999999999999999999999853 459999999999999999 99999973
No 144
>PRK11906 transcriptional regulator; Provisional
Probab=98.55 E-value=2.1e-06 Score=91.41 Aligned_cols=148 Identities=13% Similarity=0.061 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHC---------CChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 34 DPSRAISLFWAAI---NAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 34 d~eeAi~~y~kAL---~l~p~~~~Al~~LA~vL~~~---------GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
+.+.|+.+|.+|+ .++|.+..+|-.+|.++... ....+|....+++++++|.|+.+... +|.++..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~--~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAI--MGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHh
Confidence 4678999999999 89999999999998887543 23456667778888899988876544 3455666
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
.|+++.|+..|++|+.++|. .+.+++.+|+++...|+.++|++++++|+.++|-
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn--------------------------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTD--------------------------IASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred hcchhhHHHHHHHHhhcCCc--------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 77788888888888887544 4458888888888889999999999999998888
Q ss_pred CHHHHH--HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 182 KNKQCN--LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 182 na~a~n--LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
-..+-. |-.-..-....++|+. +.+.-+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 405 RRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred hhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 765543 4442334456788888 655433
No 145
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.54 E-value=2.9e-05 Score=84.82 Aligned_cols=207 Identities=13% Similarity=0.061 Sum_probs=137.7
Q ss_pred hCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHhcCCChH
Q 011721 14 KVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD-----RSEEAIEAIKSFRCLCADDSQ 88 (479)
Q Consensus 14 k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G-----rydEAie~lekal~l~P~da~ 88 (479)
.+......+...+.+++..|++++|...|+..|..+|++...|..|..++.... ..+.-.+.|+++....|....
T Consensus 33 ~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~ 112 (517)
T PF12569_consen 33 QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA 112 (517)
T ss_pred hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc
Confidence 344333445566778899999999999999999999999988888888773333 456666777777666664210
Q ss_pred H-------------------------------------------------------------------------------
Q 011721 89 E------------------------------------------------------------------------------- 89 (479)
Q Consensus 89 ~------------------------------------------------------------------------------- 89 (479)
.
T Consensus 113 ~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~ 192 (517)
T PF12569_consen 113 PRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST 192 (517)
T ss_pred hhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchH
Confidence 0
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 90 --SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 90 --~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
+..+.++..|...|++++|++++++| |...|..++.|...|.+|...|++.+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~a--------------------------I~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKA--------------------------IEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH--------------------------HhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 00011112222333333333333333 44456667899999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCccc--h------------HHH--HHHHHHHHH
Q 011721 168 AERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQAVRASSRNEKM--D------------ESY--AKSFEHASL 230 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P~n~~a--~------------~~~--~k~~~rA~e 230 (479)
|.++++.|..+|+.|--..+ .+..+++.|+.++|.....-+..+..++.. . ..+ .+.++.|..
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999876666 899999999999999966555444322221 1 112 244566666
Q ss_pred HHHHHHhhhhcCCCCh
Q 011721 231 MLTELESQSMLQPTDY 246 (479)
Q Consensus 231 aL~el~~a~~~~P~~~ 246 (479)
.+-.+.+.+..--+||
T Consensus 327 ~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 327 RFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHHHHHhccc
Confidence 6666666655555555
No 146
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.53 E-value=1.7e-05 Score=86.87 Aligned_cols=181 Identities=16% Similarity=0.116 Sum_probs=152.2
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|....-..-........||...|...+..|+..+|+..+.++.--.+......++.|...|.++....|..
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 35677778886554444333445667999999999999999999999988888888999999999999999999988764
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
- +.+--+.+...++..++|+.+++++|+.+|... .+|..+|.++.++++.+
T Consensus 652 R---v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~--------------------------Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 652 R---VWMKSANLERYLDNVEEALRLLEEALKSFPDFH--------------------------KLWLMLGQIEEQMENIE 702 (913)
T ss_pred h---hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH--------------------------HHHHHHhHHHHHHHHHH
Confidence 2 222233556678999999999999999976543 48899999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 167 SAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.|...|...+..-|+....+. |+.+--..|..-.|.. +.++...+|+|..
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch
Confidence 999999999999999998887 9999999999999999 9999999999865
No 147
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.48 E-value=3.4e-06 Score=92.15 Aligned_cols=162 Identities=18% Similarity=0.150 Sum_probs=131.4
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
...+.+...-.+..++|.+.+.+....++..|.+.+++...|..+...|+-++|....+.++..++...--+ .++|.+
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCw--Hv~gl~ 84 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCW--HVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhH--HHHHHH
Confidence 344554444456678899999999888888899999999999999999999999999998888877754322 346678
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
|..-.+|++||.+|+.||++.|+ +..+|.-|+.+-.++++|+.....=.+.+++
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~d--------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKD--------------------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCC--------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 88889999999999999988443 4458888899999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKSLLQAV 208 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~l~kAL 208 (479)
.|.+-..|. ++.++...|++..|..+...+
T Consensus 139 ~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 139 RPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887 899999999999999944443
No 148
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.44 E-value=4.7e-07 Score=72.71 Aligned_cols=66 Identities=30% Similarity=0.423 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSL----ESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL----dPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
|+...+++++|.+|..+|+|++|+.+|++|+.+ .++++ ..++ ||.++..+|++++|+. +.+++.+.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344569999999999999999999999999976 22333 3455 9999999999999999 88888763
No 149
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.42 E-value=7.7e-07 Score=70.32 Aligned_cols=62 Identities=37% Similarity=0.467 Sum_probs=57.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|..+|.+.++|++|+.++++++.++|+++..+. +|.+|..+|++++|+. +.+++...|++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 457899999999999999999999999998887 9999999999999999 9999999997654
No 150
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.40 E-value=7.8e-07 Score=69.31 Aligned_cols=57 Identities=28% Similarity=0.406 Sum_probs=51.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 159 YLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
++..|+|++|+..|++++..+|++..++. ||.||+.+|++++|.. +.+.+..+|++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 46889999999999999999999999887 9999999999999999 888889999753
No 151
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.39 E-value=2.3e-05 Score=75.05 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=119.6
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR-CLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal-~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
-|++.+.....+.+...|... -.+.||..+.+.|++.||...|++++ .+.-.++... ++++......+++.+|...
T Consensus 70 ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~l--LglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 70 LDPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAML--LGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred cChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHH--HHHHHHHHhhccHHHHHHH
Confidence 477887777777787777654 36789999999999999999998866 4566666544 4466788899999999999
Q ss_pred HHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 011721 112 LKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAIC 191 (479)
Q Consensus 112 lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~nLG~~ 191 (479)
++...+..|.... ++-...+|.+|..+|++.+|+..|+.++..-|+....+..+..
T Consensus 147 Le~l~e~~pa~r~------------------------pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~ 202 (251)
T COG4700 147 LEDLMEYNPAFRS------------------------PDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEM 202 (251)
T ss_pred HHHHhhcCCccCC------------------------CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9998887654321 1245678999999999999999999999999997776778999
Q ss_pred HHHcCCHHHHHH-HHHH
Q 011721 192 LIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 192 L~~lGr~dEAi~-l~kA 207 (479)
+..+|+.+||.. +...
T Consensus 203 La~qgr~~ea~aq~~~v 219 (251)
T COG4700 203 LAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHhcchhHHHHHHHHH
Confidence 999999999988 5443
No 152
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.39 E-value=4e-05 Score=87.74 Aligned_cols=167 Identities=13% Similarity=-0.065 Sum_probs=107.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH---HHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDR---------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ---ESL 91 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~---------~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~---~~l 91 (479)
....+.+..+++++|..++..+...-+. .......+|.++...|++++|...+++++...+.... ...
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3445667789999999999887653111 1234456788889999999999999998886554321 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
...++.++...|++++|+..+++++.+....... .....++.++|.++..+|++++|..+
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~--------------------~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVY--------------------HYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch--------------------HHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3446678889999999999999999874431100 00112456666666666677766666
Q ss_pred HHHHHHcCCC-----CH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 172 YMKALSLESD-----KN---KQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 172 yrKALeLdPd-----na---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
+++++.+... .. ..+. +|.++...|++++|.. +.+++.+
T Consensus 554 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 554 QEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 6666665211 11 1122 5666666666666666 5555554
No 153
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.39 E-value=2.3e-06 Score=68.68 Aligned_cols=66 Identities=27% Similarity=0.447 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.++.+|..+|++++|+.+|++++++. .... .-.++...+++++|.+|..+|++++|+.+|+
T Consensus 10 ~la~~~~~~~~~~~A~~~~~~al~~~-~~~~------------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYYEKALDIE-EQLG------------------DDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHH-HHTT------------------THHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH-HHHC------------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777777777777777777762 1110 0012334689999999999999999999999
Q ss_pred HHHHc
Q 011721 174 KALSL 178 (479)
Q Consensus 174 KALeL 178 (479)
+|+++
T Consensus 71 ~al~i 75 (78)
T PF13424_consen 71 KALDI 75 (78)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99986
No 154
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.39 E-value=3.3e-05 Score=88.38 Aligned_cols=169 Identities=13% Similarity=-0.009 Sum_probs=125.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-c----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC----hHHHHHHHHH
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDR-V----DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD----SQESLDNVLL 96 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~-~----~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d----a~~~l~~aLg 96 (479)
+.++...|++++|..++++++...+. . ..++..+|.++...|++++|+..+++++...... ........++
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34567889999999999999984332 1 2356789999999999999999999988764432 1122334467
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.++...|++++|...+++++.+....... . .+....++..+|.++..+|++++|..++++++
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~----------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLE--Q----------------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccc--c----------------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 88999999999999999999874331100 0 00111245678999999999999999999999
Q ss_pred HcCCCC-----HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 177 SLESDK-----NKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 177 eLdPdn-----a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
.+.... ...+. +|.++...|++++|.. +.+++.+..
T Consensus 601 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 601 EVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 874321 23344 8999999999999999 777766543
No 155
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.38 E-value=9.1e-07 Score=68.94 Aligned_cols=65 Identities=28% Similarity=0.386 Sum_probs=55.9
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
...|++++|+..|++++..+|. +.++++.||.+|..+|++++|...+++++..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--------------------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--------------------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5689999999999999998554 44588999999999999999999999999999
Q ss_pred CCCHHHHH-HHH
Q 011721 180 SDKNKQCN-LAI 190 (479)
Q Consensus 180 Pdna~a~n-LG~ 190 (479)
|+++..+. ++.
T Consensus 56 ~~~~~~~~l~a~ 67 (68)
T PF14559_consen 56 PDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHH
T ss_pred cCHHHHHHHHhc
Confidence 99877665 554
No 156
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=1.9e-05 Score=85.71 Aligned_cols=185 Identities=19% Similarity=0.138 Sum_probs=113.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
+.+..++++++|+.-..+.+...|++..++..--+++.+.++|++|+...+.-....-.+. +.+--+-|..++++.+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~---~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS---FFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch---hhHHHHHHHHHcccHH
Confidence 4566778999999999999999999999999999999999999999965554222211111 1011234677899999
Q ss_pred HHHHHHH-------HHHHhchhHHhcCCCchHHHHhhchhHH-Hhhhh----------------------------h-HH
Q 011721 107 EEIELLK-------RKLKKTEEVIACGGKSTKIARSQGRKTQ-ITLVQ----------------------------E-LS 149 (479)
Q Consensus 107 eAie~le-------kALkl~p~~la~~~k~~~~A~~~g~k~~-l~L~p----------------------------e-~~ 149 (479)
+|+..++ .++.+.-+..- -...++.|...++... -..+. + .-
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 9999988 23332111110 0012223332222211 00000 0 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC---H----H-HHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSL-------ESDK---N----K-QCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeL-------dPdn---a----~-a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
+.+||.+.++...|+|.+|++.+++|+.+ +-.+ . . ... |+.+|..+|+-+||.. +...+..+|
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 45678888888888888888888888443 1111 0 1 123 7888888888888888 777777777
Q ss_pred CCc
Q 011721 213 RNE 215 (479)
Q Consensus 213 ~n~ 215 (479)
.+.
T Consensus 256 ~D~ 258 (652)
T KOG2376|consen 256 ADE 258 (652)
T ss_pred CCc
Confidence 654
No 157
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=5.3e-06 Score=84.07 Aligned_cols=194 Identities=15% Similarity=0.152 Sum_probs=139.8
Q ss_pred hCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHH
Q 011721 14 KVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDN 93 (479)
Q Consensus 14 k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~ 93 (479)
.+|+|...-+. +..+.+.+++.||..+.--.+.+|+...++..||.+|....+|.+|..+|+++-.+.|...+..+..
T Consensus 7 ~i~EGeftavi--y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 7 QIPEGEFTAVV--YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred cCCCCchHHHH--HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 35666433221 2235688999999999888889998888999999999999999999999999999999866554443
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhh------chhHHHhhhh--hHHHHHHHHHHHHHHcCCH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQ------GRKTQITLVQ--ELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~------g~k~~l~L~p--e~~~al~nLG~ay~~lGdy 165 (479)
+..+.+.+.+.+|+......... +..... ....+.|+.. +-..-+.-.| ++++...+.|.++++.|+|
T Consensus 85 --AQSLY~A~i~ADALrV~~~~~D~-~~L~~~-~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 85 --AQSLYKACIYADALRVAFLLLDN-PALHSR-VLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred --HHHHHHhcccHHHHHHHHHhcCC-HHHHHH-HHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH
Confidence 45667889999998877655542 111100 0000011110 0000022223 4568899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHcCCHHHHHH-HH----HHHHhcCC
Q 011721 166 ESAERYYMKALSLESDKN-KQCNLAICLIRLNRIAEAKS-LL----QAVRASSR 213 (479)
Q Consensus 166 deA~~~yrKALeLdPdna-~a~nLG~~L~~lGr~dEAi~-l~----kAL~l~P~ 213 (479)
++|++-|..|++..--++ .+|+++.++...|+++.|+. .. +.++..|+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 999999999999988887 57889999999999999998 44 34555665
No 158
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.36 E-value=2e-06 Score=67.99 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=58.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.+|...+++++|+.++++++.++|. ++.++..+|.+|..+|++++|+..|++++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD--------------------------DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc--------------------------cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5789999999999999999998555 44589999999999999999999999999
Q ss_pred HcCCCCHHHHH
Q 011721 177 SLESDKNKQCN 187 (479)
Q Consensus 177 eLdPdna~a~n 187 (479)
++.|+++.+..
T Consensus 57 ~~~p~~~~~~~ 67 (73)
T PF13371_consen 57 ELSPDDPDARA 67 (73)
T ss_pred HHCCCcHHHHH
Confidence 99999987655
No 159
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.34 E-value=5.6e-06 Score=82.78 Aligned_cols=64 Identities=22% Similarity=0.195 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
++|.||.+++.+|+|++|...|..++.-.|+++ +++. ||.++..+|+.++|.. +.+.+...|+.
T Consensus 180 A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 180 AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 555566666666666666666666666555553 3444 6666666666666666 55555555554
No 160
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.34 E-value=2.5e-05 Score=69.64 Aligned_cols=93 Identities=23% Similarity=0.189 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC---ChHHHHHHHHH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD---DSQESLDNVLL 96 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~---~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~---da~~~l~~aLg 96 (479)
+....++-..|+.++|+.+|++|+..+.. -..++..+|..|..+|++++|+..+++++...|+ +.... ..++
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~--~f~A 82 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR--VFLA 82 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH--HHHH
Confidence 34455777889999999999999996543 3568899999999999999999999999999888 33332 3345
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALk 117 (479)
.++...|++++|+..+..++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 678899999999999887765
No 161
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.33 E-value=1.8e-05 Score=75.79 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=116.3
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~-l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
++..+.+...|+..+-| +++......|++.+|..+|.+++. +--.+...+..++......+++.+|...++.+.+.+|
T Consensus 77 Rea~~~~~~ApTvqnr~-rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 77 REATEELAIAPTVQNRY-RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHhhchhHHHHH-HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 45667788888877664 455677888999999999999997 5555677788999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
..-...-.+.++.+|..+|++.+|...|+.++..+|... +....|..+..+|+
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~---------------------------ar~~Y~e~La~qgr 208 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ---------------------------ARIYYAEMLAKQGR 208 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH---------------------------HHHHHHHHHHHhcc
Confidence 643222334567899999999999999999999887643 33456778889999
Q ss_pred HHHHHHHHHHHHHc
Q 011721 165 YESAERYYMKALSL 178 (479)
Q Consensus 165 ydeA~~~yrKALeL 178 (479)
.++|...|.....-
T Consensus 209 ~~ea~aq~~~v~d~ 222 (251)
T COG4700 209 LREANAQYVAVVDT 222 (251)
T ss_pred hhHHHHHHHHHHHH
Confidence 99988877766543
No 162
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=2.1e-05 Score=85.44 Aligned_cols=155 Identities=18% Similarity=0.179 Sum_probs=93.8
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 23 VRAKRAQL-VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 23 v~a~~~~L-~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
++++-+.+ ....|+.|+.+.++-... .......+.-|.++.++++.|+|++.+. ..++.+.. +...-+.++.+
T Consensus 49 ~~cKvValIq~~ky~~ALk~ikk~~~~-~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~--ll~L~AQvlYr 122 (652)
T KOG2376|consen 49 IRCKVVALIQLDKYEDALKLIKKNGAL-LVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDK--LLELRAQVLYR 122 (652)
T ss_pred HhhhHhhhhhhhHHHHHHHHHHhcchh-hhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchH--HHHHHHHHHHH
Confidence 44544444 446788888544432211 1111122577889999999999999988 33443321 12223577888
Q ss_pred cCCHHHHHHHHHHHHHhchhHH----------------h----cCC--------------------CchHHHHhhchhHH
Q 011721 102 SKRIEEEIELLKRKLKKTEEVI----------------A----CGG--------------------KSTKIARSQGRKTQ 141 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~l----------------a----~~~--------------------k~~~~A~~~g~k~~ 141 (479)
+|+|++|+..|+..++-..+.. + ..+ ..+..|.....++.
T Consensus 123 l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 123 LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999999999998876432100 0 000 11112222222221
Q ss_pred ------H--------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 142 ------I--------TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 142 ------l--------~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
+ .+..+-.-+...|+.||..+|+.++|...|...+..+|-+.
T Consensus 203 ~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 203 RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 0 11111225678999999999999999999999999999886
No 163
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.28 E-value=0.0001 Score=73.40 Aligned_cols=184 Identities=16% Similarity=0.128 Sum_probs=134.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHH-HHHHH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDN-VLLEL 98 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~---~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~-aLg~l 98 (479)
...+...+..|++++|+..|++.....|. ...+...++.++...++|++|+..+++.+.+.|.++.+.+.. ..|.+
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 34566788999999999999998876554 467889999999999999999999999999999876542221 12222
Q ss_pred H--------HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 99 Y--------KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 99 Y--------~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
+ ..+.-..+|+..|+..+..+|...-. ..|.... ..+...-+.-=..+|..|.+.|.|-.|+.
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya-----~dA~~~i----~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA-----PDAKARI----VKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch-----hhHHHHH----HHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 2 22334567888888888888763210 0000000 01111112223677999999999999999
Q ss_pred HHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 011721 171 YYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKSLLQAVRASSRNE 215 (479)
Q Consensus 171 ~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P~n~ 215 (479)
.++.+++--|+.. +++. |..+|..+|-.++|....+.|..+..+.
T Consensus 189 R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 189 RFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9999999988876 4566 8999999999999999999988876554
No 164
>PRK11906 transcriptional regulator; Provisional
Probab=98.27 E-value=2.2e-05 Score=83.81 Aligned_cols=130 Identities=11% Similarity=0.003 Sum_probs=97.5
Q ss_pred HHHHHHHHHCC---ChHHHHHHHHHHH---HhcCCChHHHHHHHHHHHHHHc---C------CHHHHHHHHHHHHHhchh
Q 011721 57 KDMAVVMKQLD---RSEEAIEAIKSFR---CLCADDSQESLDNVLLELYKRS---K------RIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 57 ~~LA~vL~~~G---rydEAie~lekal---~l~P~da~~~l~~aLg~lY~kl---G------r~deAie~lekALkl~p~ 121 (479)
+..|......+ ..+.|+.+|.+++ .++|+.+.++- +++.++... | ...+|.+.-++|
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~--~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA------ 330 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYC--LLAECHMSLALHGKSELELAAQKALELLDYV------ 330 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHH--HHHHHHHHHHHhcCCCchHHHHHHHHHHHHH------
Confidence 44555554443 4567888899999 88998765432 233333221 1 122233333333
Q ss_pred HHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHH
Q 011721 122 VIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAE 200 (479)
Q Consensus 122 ~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dE 200 (479)
+++++.++.+++.+|.++...++++.|+..|++|+.++|+.+.++. +|.++.-.|+.++
T Consensus 331 --------------------veld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 331 --------------------SDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred --------------------HhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 4567788889999999999999999999999999999999999887 9999999999999
Q ss_pred HHH-HHHHHHhcCCC
Q 011721 201 AKS-LLQAVRASSRN 214 (479)
Q Consensus 201 Ai~-l~kAL~l~P~n 214 (479)
|+. +.++++++|.-
T Consensus 391 a~~~i~~alrLsP~~ 405 (458)
T PRK11906 391 ARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHhccCchh
Confidence 999 99999999953
No 165
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=2.4e-05 Score=86.60 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=141.2
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh--cCC
Q 011721 50 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA--CGG 127 (479)
Q Consensus 50 p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la--~~~ 127 (479)
|.....-..+|.++...|-..+|+.+|+++-..+| .+.+|...|+..+|.+...+-++-.|.... ..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw~~----------vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMWDP----------VILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHH----------HHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhh
Confidence 33444556799999999999999999998755544 246899999999999999999985444321 111
Q ss_pred ------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHH
Q 011721 128 ------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAE 200 (479)
Q Consensus 128 ------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dE 200 (479)
.-++.|...++ .-...|...+|...+..++|.+|.++++.+++++|-....+. +|.|.++++++..
T Consensus 465 Dv~~d~s~yEkawElsn-------~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSN-------YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhccChHHHHHHHHHhh-------hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 11223332222 223457788888888899999999999999999999998877 9999999999999
Q ss_pred HHH-HHHHHHhcCCCccchH----HH--HHHHHHHHHHHHHHHhhhhcCCC---Chh-----hHHHHHhhhhhhhhcCCC
Q 011721 201 AKS-LLQAVRASSRNEKMDE----SY--AKSFEHASLMLTELESQSMLQPT---DYG-----EDKRKKILSSCTYINGSE 265 (479)
Q Consensus 201 Ai~-l~kAL~l~P~n~~a~~----~~--~k~~~rA~eaL~el~~a~~~~P~---~~~-----~~~~~~~~~~~~~i~~~~ 265 (479)
|.. |...+.++|++..+-. .+ .+...+|-..+.+..+.--.++. +++ +.+.+...+.+.++..++
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999 9999999999977522 22 24445666666665544322221 111 334445555666655555
Q ss_pred CC
Q 011721 266 EN 267 (479)
Q Consensus 266 ~~ 267 (479)
-+
T Consensus 618 ~~ 619 (777)
T KOG1128|consen 618 KK 619 (777)
T ss_pred hh
Confidence 44
No 166
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.26 E-value=4.2e-06 Score=89.03 Aligned_cols=71 Identities=8% Similarity=0.060 Sum_probs=62.9
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 48 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 48 l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
.+|++..+++++|.+|..+|+|++|+..|+++++++|+++.+ ...+.++.+|..+|++++|+++|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888999999999999999999999999999999998754 23344678999999999999999999998
No 167
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.25 E-value=4.9e-06 Score=87.16 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHc----CCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHcCC
Q 011721 35 PSRAISLFWAAINA----GDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD----DSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 35 ~eeAi~~y~kAL~l----~p~--~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~----da~~~l~~aLg~lY~klGr 104 (479)
++.|..+|..-+++ ++. ...++-+||..|.-+|+|++||..-+.-+.+... -+.-..+..|+++|.-+|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 56677777776653 222 2246778999999999999999987664444322 1122223346789999999
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK-- 182 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn-- 182 (479)
++.|+++|++++.+.- ..+.+. ..+...+.||+.|.-+.+|+.||.|+.+-|+|...-
T Consensus 251 fe~A~ehYK~tl~LAi--------------elg~r~------vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D 310 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAI--------------ELGNRT------VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED 310 (639)
T ss_pred cHhHHHHHHHHHHHHH--------------Hhcchh------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998732 222111 123466899999999999999999999988875432
Q ss_pred ----HHHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 183 ----NKQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 183 ----a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
..+|- ||.+|..+|..++|+. ..+.+++
T Consensus 311 riGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 311 RIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 23455 9999999999999999 6666554
No 168
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.23 E-value=1e-05 Score=76.81 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 35 PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lek 114 (479)
++.|.+.++.....+|.+.+++++-|.+|..+.++...-+ ....+++|+.-|++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~e--------------------------s~~miedAisK~ee 60 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPE--------------------------SKKMIEDAISKFEE 60 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHH--------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcch--------------------------HHHHHHHHHHHHHH
Confidence 4555666666666666666666666666655433211000 00123456666666
Q ss_pred HHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCH
Q 011721 115 KLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND-----------YESAERYYMKALSLESDKN 183 (479)
Q Consensus 115 ALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd-----------ydeA~~~yrKALeLdPdna 183 (479)
||.++ |+..++++++|++|..++. |++|..+|++|..++|++.
T Consensus 61 AL~I~--------------------------P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 61 ALKIN--------------------------PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHH---------------------------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHhcC--------------------------CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 66664 4455688999999887764 5555566666666666554
Q ss_pred H
Q 011721 184 K 184 (479)
Q Consensus 184 ~ 184 (479)
.
T Consensus 115 ~ 115 (186)
T PF06552_consen 115 L 115 (186)
T ss_dssp H
T ss_pred H
Confidence 3
No 169
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=5.4e-05 Score=80.21 Aligned_cols=127 Identities=20% Similarity=0.136 Sum_probs=103.3
Q ss_pred CCCCcHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHH
Q 011721 16 PAGDSPYVRAK--RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDN 93 (479)
Q Consensus 16 p~~~~pyv~a~--~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~ 93 (479)
|...+.|+-.+ .+....++++.|+.+|++..+.+|. +...|+.++...++-.+|+..+.+++..+|.+... ..
T Consensus 164 ~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~L--L~ 238 (395)
T PF09295_consen 164 PTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSEL--LN 238 (395)
T ss_pred CCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH--HH
Confidence 45555565432 2334458999999999998888875 45568999999999999999999999999998543 33
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
..+..+...|+++.|+...++|+.+.|. +-+.|+.|+.+|..+|+|++|+..+.
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~--------------------------~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELSPS--------------------------EFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCch--------------------------hHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4568899999999999999999998655 34599999999999999999997665
No 170
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=7.5e-05 Score=77.34 Aligned_cols=183 Identities=17% Similarity=0.085 Sum_probs=127.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHH
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEE 107 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~-~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~de 107 (479)
.+...|+..|+.+++-.+..+.... +.-.-+|.++..+|+|++|+..|+-+...+.-++ .+...|+.++.-+|.|.+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHHHHHHHHH
Confidence 5678899999999998887665544 4455689999999999999999998877443333 344456788889999999
Q ss_pred HHHHHHHHHHhchhHHhcCCCchHHHHhhchhHH-Hh---hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 108 EIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQ-IT---LVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 108 Aie~lekALkl~p~~la~~~k~~~~A~~~g~k~~-l~---L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
|...-.+|-+.--....+ ...|...+...+ +. -..+..+-...|+.+.+..-.|.+|+..|.++|.-+|+..
T Consensus 110 A~~~~~ka~k~pL~~RLl----fhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKAPKTPLCIRLL----FHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhCCCChHHHHHH----HHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 988766654320000000 000111111101 00 0122224456788888888899999999999999998876
Q ss_pred HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 184 KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 184 ~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
..-. +|.||.++.=++-+.+ +.--|...|+..-+
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence 5433 9999999999999999 66678888987654
No 171
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=4.6e-05 Score=73.73 Aligned_cols=100 Identities=18% Similarity=0.140 Sum_probs=75.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
+-++..|+|++|..-|..||.+.|....- .-.-.|.|.|.++++++..+.|+....|||
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e---------------------~rsIly~Nraaa~iKl~k~e~aI~dcsKai 161 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTE---------------------ERSILYSNRAAALIKLRKWESAIEDCSKAI 161 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHH---------------------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhH
Confidence 33456677777777777777776654320 001267888888889999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+|+|.+..++. .|.+|-++.+|++|+. |.+.+..+|....+
T Consensus 162 el~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 162 ELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 99998888887 7888888888999998 88888888876554
No 172
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=1.6e-05 Score=76.83 Aligned_cols=99 Identities=21% Similarity=0.205 Sum_probs=66.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHH
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKN-----KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKS 224 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna-----~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~ 224 (479)
-|+-++..|+|++|..-|..||++-|... ..|. -|.++++++..+.|+. +.+||.++|.+..+... .-..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 45566777888888888888888877764 1232 7778888888888888 88888888876664331 1123
Q ss_pred HHHHHHHHHHHHhhhhcCCCChhhHHHHHhh
Q 011721 225 FEHASLMLTELESQSMLQPTDYGEDKRKKIL 255 (479)
Q Consensus 225 ~~rA~eaL~el~~a~~~~P~~~~~~~~~~~~ 255 (479)
+++..++|..+.+-+..+|.... .++.+.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~e--ar~~i~ 209 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRRE--AREAIA 209 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 36677777777777777776553 444443
No 173
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.17 E-value=3.2e-05 Score=70.87 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..++.-|.-.++.|+|++|++.|+.+....|-...+ ...+.|+.+|.+.|++++|+..+++-|+++|....
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-------- 82 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-------- 82 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC--------
Confidence 344555555555555555555555555555543211 11223445555555555555555555555554321
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHcCCCCH
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQND---------------YESAERYYMKALSLESDKN 183 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd---------------ydeA~~~yrKALeLdPdna 183 (479)
...+++..|.+++.+.. ..+|...|++.+..-|++.
T Consensus 83 ---------------vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 83 ---------------VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred ---------------ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 11256666666666555 6677777777777777765
No 174
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.17 E-value=3.7e-06 Score=86.41 Aligned_cols=95 Identities=21% Similarity=0.158 Sum_probs=86.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|+-|.++|+|++||.+|.+++.++|.. +-.+.|.+.+|+++++|..|+.....|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~N--------------------------pV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHN--------------------------PVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCC--------------------------ccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 578999999999999999999886643 237899999999999999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.++-....+|. .|.+-..+|...||.. ++.+|++.|++..
T Consensus 158 iaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 158 IALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 999999999998 9999999999999999 9999999998754
No 175
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.17 E-value=1.1e-05 Score=83.02 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=88.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
+...|.-|+.+|.|+|||.+|.+.+.++|-++-.+.+.+ ..|.++.+|..|....+.|+.++...
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA--~AYlk~K~FA~AE~DC~~AiaLd~~Y------------- 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRA--LAYLKQKSFAQAEEDCEAAIALDKLY------------- 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHH--HHHHHHHHHHHHHHhHHHHHHhhHHH-------------
Confidence 456899999999999999999999999998876665555 56999999999999999999885432
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
..+|...|.+-..+|+..+|.+.|+.+|++.|++...
T Consensus 165 -------------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 165 -------------VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred -------------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHH
Confidence 2488999999999999999999999999999997643
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=98.14 E-value=4e-05 Score=71.83 Aligned_cols=111 Identities=10% Similarity=-0.021 Sum_probs=93.8
Q ss_pred HHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc
Q 011721 46 INAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC 125 (479)
Q Consensus 46 L~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~ 125 (479)
..+.++.-+..+..|.-+.++|++++|...|+-+...+|-+... .++|+.++..+|+|++|+..|-.|..+.
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y--~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~------ 101 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY--TMGLAAVCQLKKQFQKACDLYAVAFTLL------ 101 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc------
Confidence 34556666778889999999999999999999999999998764 4667899999999999999999888763
Q ss_pred CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 126 GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 126 ~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
++++...+..|.+|+.+|+.++|..+|..|++ .|.+...
T Consensus 102 --------------------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 102 --------------------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred --------------------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 34455789999999999999999999999999 5665543
No 177
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.11 E-value=4.7e-05 Score=77.42 Aligned_cols=131 Identities=18% Similarity=0.063 Sum_probs=80.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G--rydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
++++..++++.|...++.+-+.+++..-+....|.+....| .+.+|.-.|+.+....+..+ .+.++++.++..+|+
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~--~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP--KLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH--HHHHHHHHHHHHCT-
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHhCC
Confidence 45556666666666666655555443322222333333333 46666666666555544433 233445566667777
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCH
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY-ESAERYYMKALSLESDKN 183 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy-deA~~~yrKALeLdPdna 183 (479)
+++|.+.+++|+.. +|.+++++.|+..+...+|+. +.+.+++.+....+|+++
T Consensus 217 ~~eAe~~L~~al~~--------------------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 217 YEEAEELLEEALEK--------------------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHCCC---------------------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHHh--------------------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 77777766666554 456677999999999999999 677888888888999998
Q ss_pred HH
Q 011721 184 KQ 185 (479)
Q Consensus 184 ~a 185 (479)
..
T Consensus 271 ~~ 272 (290)
T PF04733_consen 271 LV 272 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 178
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.07 E-value=0.00011 Score=66.78 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=83.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
+-.-|+.+...|+.++|++.|.+++.+.|..+.++.+ -+..|.-+|+.++|+..+++|+++. +..+..+.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNN--RAQa~RLq~~~e~ALdDLn~AleLa-------g~~trtac- 115 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNN--RAQALRLQGDDEEALDDLNKALELA-------GDQTRTAC- 115 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhcc--HHHHHHHcCChHHHHHHHHHHHHhc-------CccchHHH-
Confidence 4456888999999999999999999999998755433 4578899999999999999999882 22222222
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
.++...|.+|..+|+.+.|...|+.|-++....+
T Consensus 116 --------------qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 116 --------------QAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred --------------HHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 3788999999999999999999999988877664
No 179
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.06 E-value=0.0024 Score=66.98 Aligned_cols=191 Identities=18% Similarity=0.112 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAG-DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~-p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
.|..+..+.-..||.+.|-.++.++-+.. ++....+..++.++..+|+++.|..-..++++..|.++... .....+|
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vl--rLa~r~y 197 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVL--RLALRAY 197 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHH--HHHHHHH
Confidence 44556667777899999999999998873 33445677889999999999999999999999999987642 2334889
Q ss_pred HHcCCHHHHHHHHHHHHHhc----hhHH-----hcCCCchHHHHh----hchhHH---H-hhhhhHHHHHHHHHHHHHHc
Q 011721 100 KRSKRIEEEIELLKRKLKKT----EEVI-----ACGGKSTKIARS----QGRKTQ---I-TLVQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~----p~~l-----a~~~k~~~~A~~----~g~k~~---l-~L~pe~~~al~nLG~ay~~l 162 (479)
...|++.+....+.+.-+.. ++.. +..+. -+.+.. .+.+.- + .-...++++...++.=+.+.
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl-L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL-LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH-HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 99999999888877665431 1100 00000 000000 000000 0 00001122333333334444
Q ss_pred -------------------------------CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 163 -------------------------------NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 163 -------------------------------GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
+++..=++..++.++..|+++..+. ||..++..+.|.+|.. ++.|+.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred CChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4555555555566666788887766 9999999999999999 777888
Q ss_pred hcCCC
Q 011721 210 ASSRN 214 (479)
Q Consensus 210 l~P~n 214 (479)
..|+.
T Consensus 357 ~~~s~ 361 (400)
T COG3071 357 LRPSA 361 (400)
T ss_pred cCCCh
Confidence 87764
No 180
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.05 E-value=2.8e-05 Score=77.80 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=76.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHH-----
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESY----- 221 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~----- 221 (479)
+|+.|.-++..|+|.+|+..|..-+..-|+.. .++. ||.++..+|+|++|.. +...+...|++.++-+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 57788888999999999999999999999985 5677 9999999999999999 999999999998874421
Q ss_pred ----HHHHHHHHHHHHHHHhhhhcCC
Q 011721 222 ----AKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 222 ----~k~~~rA~eaL~el~~a~~~~P 243 (479)
+...+.|...|+++.+..+..+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 2445778888888887764443
No 181
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00048 Score=69.08 Aligned_cols=176 Identities=18% Similarity=0.146 Sum_probs=115.3
Q ss_pred CCHHHHHH-HHHHHHHcCCCcH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 33 KDPSRAIS-LFWAAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIE 110 (479)
Q Consensus 33 gd~eeAi~-~y~kAL~l~p~~~-~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie 110 (479)
++.+.-+. .++..+....... ..+..-|.+|...|++++|+........++ ....+ ..++.++.+++-|+.
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE-----~~Al~--VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE-----AAALN--VQILLKMHRFDLAEK 158 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH-----HHHHH--HHHHHHHHHHHHHHH
Confidence 44444333 4444444333333 344455788999999999999887643332 11111 256788899999999
Q ss_pred HHHHHHHhchhHHh-----------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 111 LLKRKLKKTEEVIA-----------CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 111 ~lekALkl~p~~la-----------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
.+++...++.+..- ..+...+.|...+... -..-+..+..++.++.+.+.+|+|++|+..++.||.-+
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~-s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL-SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH-hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 99999998776431 0111111111111100 01123345678889999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHcCCHHHHHH-HH-HHHHhcCCCcc
Q 011721 180 SDKNKQCN-LAICLIRLNRIAEAKS-LL-QAVRASSRNEK 216 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr~dEAi~-l~-kAL~l~P~n~~ 216 (479)
+++++.+. +-.+-..+|.-.++.. +. +.....|+++.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 99998874 8888888999888888 55 45566777655
No 182
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.97 E-value=0.00015 Score=66.54 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=65.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|....+.|+|++|++.|+.....+|.+.- ...+...||.+|+..|+|++|+..|++-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-----------------------a~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEY-----------------------AEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcc-----------------------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45567899999999999999998876432 1247799999999999999999999999
Q ss_pred HHcCCCCHH---HHH-HHHHHHHcCC
Q 011721 176 LSLESDKNK---QCN-LAICLIRLNR 197 (479)
Q Consensus 176 LeLdPdna~---a~n-LG~~L~~lGr 197 (479)
++++|.++. ++. .|.+++.+..
T Consensus 74 irLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 999999973 344 8888888765
No 183
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.97 E-value=7.6e-05 Score=70.89 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCC-----------HHHHHH-HHHHHHhcCCCcc
Q 011721 164 DYESAERYYMKALSLESDKNKQCN-LAICLIRLNR-----------IAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 164 dydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr-----------~dEAi~-l~kAL~l~P~n~~ 216 (479)
-+++|+.=|++||.|+|+..+++. ||.+|..++. |++|.. +.+|+..+|+|..
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 467899999999999999998876 9999988764 788888 7889999998743
No 184
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.95 E-value=1.4e-05 Score=54.52 Aligned_cols=33 Identities=45% Similarity=0.656 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
.+|+++|.+|..+|++++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 489999999999999999999999999999974
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.00032 Score=70.37 Aligned_cols=142 Identities=19% Similarity=0.233 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
...+.+..++...|.|.-....+.++++.+|..- ..+...|+.+-++.|+.+.|..+|+++-+.......
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--------- 247 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--------- 247 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc---------
Confidence 3556788889999999999999999999985432 234556888999999999999999977654222111
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.....-++.+.+.+|.-+++|.+|...|.+.+..||.++.+.| .|.|++-+|+..+|++ +..++...
T Consensus 248 -----------~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 248 -----------LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred -----------cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1112237788999999999999999999999999999999988 9999999999999999 88999999
Q ss_pred CCCcc
Q 011721 212 SRNEK 216 (479)
Q Consensus 212 P~n~~ 216 (479)
|....
T Consensus 317 P~~~l 321 (366)
T KOG2796|consen 317 PRHYL 321 (366)
T ss_pred Cccch
Confidence 97543
No 186
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.93 E-value=1.8e-05 Score=57.59 Aligned_cols=41 Identities=32% Similarity=0.325 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAI 190 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~ 190 (479)
+++..||.+|..+|++++|++.|+++++++|+++.++. ||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 47899999999999999999999999999999998877 775
No 187
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.88 E-value=2.8e-05 Score=52.47 Aligned_cols=33 Identities=36% Similarity=0.497 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
++++.+|.+|..+|+|++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 588999999999999999999999999999986
No 188
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.86 E-value=0.00088 Score=69.77 Aligned_cols=143 Identities=13% Similarity=-0.004 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCc
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKS 129 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~ 129 (479)
.++..||.++...+.|+++++.|+.++.+..++.+ ..+...|+.+|....++++|+-+..+|+++...... ....
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~ 201 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWS 201 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-Cchh
Confidence 45667888888888888888888888876544322 233445778888888888888888888887332110 0000
Q ss_pred hHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CH---HHHH-HHHHHHHcCCHHHHH
Q 011721 130 TKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD---KN---KQCN-LAICLIRLNRIAEAK 202 (479)
Q Consensus 130 ~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd---na---~a~n-LG~~L~~lGr~dEAi 202 (479)
+ ....-+++.++.+|..+|....|.++.+.|.++.-. .+ .... +|.+|...|+.+.|.
T Consensus 202 ---~------------kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 202 ---L------------KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred ---H------------HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence 0 001237899999999999999999999999887432 22 2233 999999999999999
Q ss_pred H-HHHHHHhcC
Q 011721 203 S-LLQAVRASS 212 (479)
Q Consensus 203 ~-l~kAL~l~P 212 (479)
. |++|....-
T Consensus 267 ~rYe~Am~~m~ 277 (518)
T KOG1941|consen 267 RRYEQAMGTMA 277 (518)
T ss_pred HHHHHHHHHHh
Confidence 9 999876543
No 189
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=7.1e-05 Score=73.24 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=84.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
-|.+|-..|-.+-|.-.|.++|.++|+. +++++.||..+...|+|+.|.+.|..
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~P~m--------------------------~~vfNyLG~Yl~~a~~fdaa~eaFds 124 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIRPDM--------------------------PEVFNYLGIYLTQAGNFDAAYEAFDS 124 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcCCCc--------------------------HHHHHHHHHHHHhcccchHHHHHhhh
Confidence 3567888888888888899888886653 45899999999999999999999999
Q ss_pred HHHcCCCCHHHH-HHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 175 ALSLESDKNKQC-NLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 175 ALeLdPdna~a~-nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.+++||.+.-+. |.|..+.--|++.-|.. +.+-.+.+|+++.
T Consensus 125 ~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 125 VLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred HhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 999999998654 58999999999999999 9999999999875
No 190
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.80 E-value=0.0005 Score=67.45 Aligned_cols=149 Identities=16% Similarity=0.086 Sum_probs=79.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
-|=.+-|..-|.+++.+.|+-+++++-||.-|...|+|+.|.+.|...++++|..-.+.++.+++ +.--||+.-|...
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~--~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA--LYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee--eeecCchHhhHHH
Confidence 34445555555566666666666666666666666666666666666666666554444444332 2224556555555
Q ss_pred HHHHHHhchhHH-----------hcCCCchHH-----HHh--------------hchh--------H------HHhhhhh
Q 011721 112 LKRKLKKTEEVI-----------ACGGKSTKI-----ARS--------------QGRK--------T------QITLVQE 147 (479)
Q Consensus 112 lekALkl~p~~l-----------a~~~k~~~~-----A~~--------------~g~k--------~------~l~L~pe 147 (479)
|.+-...+|+.. .++++.... +.. .|+. . .-.+...
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~ 235 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEH 235 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHH
Confidence 555444443321 001100000 000 0000 0 0111222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
-.++++.||.-|..+|+.++|...|+-|+.-+--+
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 34788999999999999999999999888766544
No 191
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.79 E-value=1.9e-05 Score=54.92 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=30.0
Q ss_pred HHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 171 YYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 171 ~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
+|++||+++|+++.+++ ||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 48999999999999888 9999999999999963
No 192
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.75 E-value=0.0022 Score=75.63 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=120.8
Q ss_pred hHHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH----HCCChHHHHHHHHHH
Q 011721 5 DEELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAIN-AGDRVDSALKDMAVVMK----QLDRSEEAIEAIKSF 79 (479)
Q Consensus 5 ~~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~-l~p~~~~Al~~LA~vL~----~~GrydEAie~leka 79 (479)
-+|+...+...|-...+.++.+..++..++.++|...+++||. +++...+-..|+=.+|. .-|.-+.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 3688888999998888998888888889999999999999997 66654433333333332 234556666788888
Q ss_pred HHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 80 RCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 80 l~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
.+.+.. ...+..|..+|.+.+++++|.++|+..++-..+. ..+|..+|..+
T Consensus 1524 cqycd~---~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~--------------------------~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1524 CQYCDA---YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT--------------------------RKVWIMYADFL 1574 (1710)
T ss_pred HHhcch---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch--------------------------hhHHHHHHHHH
Confidence 887642 2344556789999999999999999988864321 12555556666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC--CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 160 LQQNDYESAERYYMKALSLESD--KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLdPd--na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+.+.+-++|-..+.+||.--|. +..... .|.+-++.|+.+.+.. +.-.|...|.
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 6666666666666666666665 233333 5555555666666665 4444555554
No 193
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=7.4e-05 Score=73.83 Aligned_cols=89 Identities=22% Similarity=0.203 Sum_probs=77.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
+.|..-.+|+.||.+|-+||.++|.+.. ++.|.+.+|+++.+++.+....++|+
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~--------------------------Y~tnralchlk~~~~~~v~~dcrral 71 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVAS--------------------------YYTNRALCHLKLKHWEPVEEDCRRAL 71 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcch--------------------------hhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence 3455567888999999999988766543 88999999999999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
+++|+...+.. ||.+++....|++|+. +.+|..+.
T Consensus 72 ql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 72 QLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 99999997765 9999999999999999 88886554
No 194
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.73 E-value=0.00031 Score=64.03 Aligned_cols=94 Identities=21% Similarity=0.144 Sum_probs=79.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+......|+.+.|++.|.++|.+.|+ .+.+|+|.+.+|.-+|+.++|+..+.+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~--------------------------raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE--------------------------RASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc--------------------------chHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 35567889999999999999998554 3459999999999999999999999999
Q ss_pred HHcCCCCHH----HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 176 LSLESDKNK----QCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 176 LeLdPdna~----a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
+++.-+... ++. -|.+|..+|+-+.|.. +..|.++....+
T Consensus 104 leLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 104 LELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 999766542 344 8999999999999999 999888876543
No 195
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0075 Score=59.82 Aligned_cols=174 Identities=18% Similarity=0.161 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAIN----AGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESL 91 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~----l~p~--~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l 91 (479)
|++++.++-..++...|=..|.+|-. .+.+ ....|...+.+|.. ++..+|+.++++++.+.-+-.. +..
T Consensus 37 ~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~ 115 (288)
T KOG1586|consen 37 YERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKH 115 (288)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 34444444445555555555555433 2222 12233344444433 3677777777776666543221 112
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 92 DNVLLELYKRS-KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 92 ~~aLg~lY~kl-Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
..-++.+|..- .++++||.+|++|-+-+..... ... ....+.-.+..-.++++|.+|+.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees---------~ss-----------ANKC~lKvA~yaa~leqY~~Ai~ 175 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES---------VSS-----------ANKCLLKVAQYAAQLEQYSKAID 175 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh---------hhh-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345666544 6667777777766655322110 000 01244555666778899999999
Q ss_pred HHHHHHHcCCCCH-------HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 171 YYMKALSLESDKN-------KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 171 ~yrKALeLdPdna-------~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.|+++..-.-+++ +.+. -|.|++...+.-.+.. +.+-..++|....
T Consensus 176 iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 176 IYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 9999998877775 2233 6889888787777777 8888889997644
No 196
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.57 E-value=0.0042 Score=67.32 Aligned_cols=152 Identities=22% Similarity=0.287 Sum_probs=110.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH--------H--H--HCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVV--------M--K--QLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~v--------L--~--~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
..||-+.++.+++++.+ .++....+-.|..+ + . .....+.|.+++...+...|+.+- +....|.+
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~l--fl~~~gR~ 276 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSAL--FLFFEGRL 276 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHH
Confidence 35899999999999987 33322222221111 1 1 356788899999999999998653 33345689
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
+...|+.++|++.|++++....... +-..-.++.+|+++..+++|++|..+|.+.++.
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~----------------------Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWK----------------------QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHH----------------------hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 9999999999999999985422110 001137899999999999999999999999998
Q ss_pred CCCCHHHHH--HHHHHHHcCCH-------HHHHH-HHHH
Q 011721 179 ESDKNKQCN--LAICLIRLNRI-------AEAKS-LLQA 207 (479)
Q Consensus 179 dPdna~a~n--LG~~L~~lGr~-------dEAi~-l~kA 207 (479)
+.-....|. .|.||...|+. ++|.. +.++
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 776655443 89999999999 66666 4443
No 197
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.54 E-value=7.5e-05 Score=51.90 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 011721 41 LFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIE 74 (479)
Q Consensus 41 ~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie 74 (479)
+|++||+++|++..++++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999974
No 198
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0086 Score=60.30 Aligned_cols=161 Identities=14% Similarity=0.133 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC----CC
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG----GK 128 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~----~k 128 (479)
..|...++..+..-++.++=+..+.+.+...-..........-+.+|..-|++++|+..+.+...+.-..+... ..
T Consensus 72 lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~ 151 (299)
T KOG3081|consen 72 LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMH 151 (299)
T ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 34566677777777777777766655554433333322233345889999999999999988555532221100 00
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
+.+.|....++ ...-++...+..||.++.. -+++.+|.-+|+.--+--|-++...+ ++.|.+.+|+|+||..
T Consensus 152 r~d~A~~~lk~---mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 152 RFDLAEKELKK---MQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHH---HHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 11111111111 1111233456667666554 35799999999999997777788888 9999999999999999
Q ss_pred -HHHHHHhcCCCcc
Q 011721 204 -LLQAVRASSRNEK 216 (479)
Q Consensus 204 -l~kAL~l~P~n~~ 216 (479)
++.+|..+++++.
T Consensus 229 lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 229 LLEEALDKDAKDPE 242 (299)
T ss_pred HHHHHHhccCCCHH
Confidence 8889999988765
No 199
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.42 E-value=0.00023 Score=48.20 Aligned_cols=33 Identities=42% Similarity=0.526 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
++++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999964
No 200
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.36 E-value=0.029 Score=56.19 Aligned_cols=140 Identities=11% Similarity=0.042 Sum_probs=107.5
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
.+.-+++-|....+.|++++|+..|+.+....|..+.. ...+.++-.+.+.|++++|+..+++-++++|....
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n------ 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN------ 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC------
Confidence 35668889999999999999999999999999986532 22334567899999999999999999999887432
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCH---HH-------------H
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQQ--------NDYESAERYYMKALSLESDKN---KQ-------------C 186 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l--------GdydeA~~~yrKALeLdPdna---~a-------------~ 186 (479)
..-+++..|.++... .-..+|+..|+..+..-|+.. ++ +
T Consensus 107 -----------------~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 107 -----------------ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred -----------------hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 223666666665543 345688899999999999872 11 2
Q ss_pred H--HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 187 N--LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 187 n--LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
. +|..|.+.|.+-.|+. +...++.-|+-
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 2 7899999999999999 77777765543
No 201
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.35 E-value=0.051 Score=62.11 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=38.8
Q ss_pred HHHHHcCCHHHHHHHH-HHHHHcCCCCHH-HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 157 WAYLQQNDYESAERYY-MKALSLESDKNK-QCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 157 ~ay~~lGdydeA~~~y-rKALeLdPdna~-a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.++..+|+|++|...+ ..-.+..+.-+. .-+ -...+..++++.+-.+ ..+.+..++++
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 5778899999999999 444444544433 334 4556666677777777 56666666665
No 202
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0016 Score=64.90 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=88.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhc-CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIAC-GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~-~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
|+-+.++|+|.+|+..|+.|+..-.....- .+.. ..=++++.-....+.|...+++..|+|=+++++.-.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e---------~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGE---------PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCC---------hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 456778999999999999999874433210 0000 000344444556889999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+|..+|+|..+|. -|.+....-+.+||.. +.++|+++|.-
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 9999999999998 9999999999999999 99999999964
No 203
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0094 Score=62.22 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=105.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH--------------HHhcCCChHHHH
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF--------------RCLCADDSQESL 91 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~leka--------------l~l~P~da~~~l 91 (479)
++.++.-|||++|+..|..+...++-......+||.++.-+|.|.||..+-.++ .+++.+.-...+
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 355677899999999999988876666777889999999999999999865542 111111000000
Q ss_pred ----------HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH
Q 011721 92 ----------DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ 161 (479)
Q Consensus 92 ----------~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~ 161 (479)
.+.|+.+....-.|.+||+.|.++|.-+|+.++ .-.+++.+|++
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a--------------------------lNVy~ALCyyK 197 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA--------------------------LNVYMALCYYK 197 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh--------------------------hHHHHHHHHHh
Confidence 011223333344566666666666665554433 44778999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc--CCHHHHHH
Q 011721 162 QNDYESAERYYMKALSLESDKNKQCN-LAICLIRL--NRIAEAKS 203 (479)
Q Consensus 162 lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~l--Gr~dEAi~ 203 (479)
+.=|+-+.+.+.--|...||...+.| ++-.+..+ |+..++..
T Consensus 198 lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 198 LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 99999999999999999999999988 55555544 66555443
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.0055 Score=61.77 Aligned_cols=130 Identities=10% Similarity=0.027 Sum_probs=100.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHc
Q 011721 28 AQLVEKDPSRAISLFWAAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC----ADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p-~~~~Al~~LA~vL~~~GrydEAie~lekal~l~----P~da~~~l~~aLg~lY~kl 102 (479)
+.+..|.|.-.+..+.+.|+.+| ..+.....||.+-.+.|+.+.|..+|+..-+.+ .-.....+....+.+|.-+
T Consensus 186 ~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~ 265 (366)
T KOG2796|consen 186 CLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQ 265 (366)
T ss_pred HHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecc
Confidence 45566788888999999999774 445556789999999999999999999654332 2222222333344678888
Q ss_pred CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 103 KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
+++.+|...|.+.+..++.. +.+-++-|.+++-+|+..+|++..+.++.+.|..
T Consensus 266 nn~a~a~r~~~~i~~~D~~~--------------------------~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 266 NNFAEAHRFFTEILRMDPRN--------------------------AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred cchHHHHHHHhhccccCCCc--------------------------hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99999999998888875543 3467888999999999999999999999999987
Q ss_pred H
Q 011721 183 N 183 (479)
Q Consensus 183 a 183 (479)
.
T Consensus 320 ~ 320 (366)
T KOG2796|consen 320 Y 320 (366)
T ss_pred c
Confidence 5
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.27 E-value=0.011 Score=53.06 Aligned_cols=59 Identities=31% Similarity=0.276 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
..++..++.++...|++++|+..+++++.++|-+...+. |-.+|..+|+..+|+. |.+.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 357788999999999999999999999999999998887 9999999999999999 6554
No 206
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.26 E-value=0.0093 Score=64.48 Aligned_cols=129 Identities=18% Similarity=0.126 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC--------------
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD-------------- 86 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d-------------- 86 (479)
|--..++....+.++..-+++.++||+++|+.++||..||.- ...-..||+++|+++++.....
T Consensus 170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 170 PAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 444455667789999999999999999999999888665532 2344678888888877643211
Q ss_pred ---------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHH
Q 011721 87 ---------SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAW 157 (479)
Q Consensus 87 ---------a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ 157 (479)
+.......|+.+..++|+.+||+++|+..++.+|... .-.++.+|-.
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~------------------------~l~IrenLie 303 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD------------------------NLNIRENLIE 303 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc------------------------hhhHHHHHHH
Confidence 0011222344556666666666666666665544211 0125566666
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 011721 158 AYLQQNDYESAERYYMKA 175 (479)
Q Consensus 158 ay~~lGdydeA~~~yrKA 175 (479)
+|+.++.|.++...+.|-
T Consensus 304 ~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 304 ALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHhcCCHHHHHHHHHHh
Confidence 666666666666666654
No 207
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.034 Score=56.80 Aligned_cols=149 Identities=17% Similarity=0.115 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 34 DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLK 113 (479)
Q Consensus 34 d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~le 113 (479)
.++.++..|-.-+- +...+.-+..+.-+...|++.+|...|..++...|++.+..+ .++.+|...|+.+.|...|.
T Consensus 117 qPesqlr~~ld~~~--~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~--~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 117 QPESQLRQFLDKVL--PAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKL--LLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred CcHHHHHHHHHHhc--ChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHH--HHHHHHHHcCChHHHHHHHH
Confidence 35555554433222 222334455677788999999999999999999999876554 45689999999999888776
Q ss_pred HHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHH
Q 011721 114 RKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA--WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAI 190 (479)
Q Consensus 114 kALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG--~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~ 190 (479)
..=.-... ..+....+ ..+.+.....+ ...+++.+.-+|+|..+.. ||.
T Consensus 193 ~lP~~~~~---------------------------~~~~~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~ 244 (304)
T COG3118 193 ALPLQAQD---------------------------KAAHGLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALAD 244 (304)
T ss_pred hCcccchh---------------------------hHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHH
Confidence 32111000 00111011 11222222222 2346677888999997766 999
Q ss_pred HHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 191 CLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 191 ~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.|...|+.++|.. +..-+..+-..
T Consensus 245 ~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 245 QLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999 77777766543
No 208
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.23 E-value=0.0068 Score=68.96 Aligned_cols=146 Identities=15% Similarity=0.193 Sum_probs=105.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHH
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deA 108 (479)
.+..+++.+|+....+.++..|+...|...-|.++.++|+.++|..+++..-...+.| +..+ -.+-.+|..+|++++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tL-q~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTL-QFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHH-HHHHHHHHHHhhhhHH
Confidence 4567899999999999999999999888889999999999999997777665555553 2222 3355899999999999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHH
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCN 187 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~-a~n 187 (479)
..+|++++..+|. . +.++.+=++|.+-++|.+=.+.--+.-+..|.++- .|.
T Consensus 97 ~~~Ye~~~~~~P~-e--------------------------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 97 VHLYERANQKYPS-E--------------------------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHHHHhhCCc-H--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 9999999999887 2 14445555666666666554444444456777763 345
Q ss_pred -HHHHHHHcCCHHHHHH
Q 011721 188 -LAICLIRLNRIAEAKS 203 (479)
Q Consensus 188 -LG~~L~~lGr~dEAi~ 203 (479)
+..++...-..+++..
T Consensus 150 V~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 150 VISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHhccCCccccc
Confidence 5655555544444433
No 209
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00092 Score=66.25 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=57.8
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchh
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRK 139 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k 139 (479)
|.-|....+|+.||.+|-+++.++|..+...-+ -+.+|.+..+++.+....++|+.+.|+..
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tn--ralchlk~~~~~~v~~dcrralql~~N~v---------------- 78 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTN--RALCHLKLKHWEPVEEDCRRALQLDPNLV---------------- 78 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhh--HHHHHHHhhhhhhhhhhHHHHHhcChHHH----------------
Confidence 344445555666666666666666654322222 23456666666666666666666644432
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 140 TQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 140 ~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.+++.||.++++...|++|+..+.+|..+
T Consensus 79 ----------k~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 79 ----------KAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred ----------HHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 37788888999999999999999998765
No 210
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.20 E-value=0.014 Score=63.16 Aligned_cols=141 Identities=18% Similarity=0.120 Sum_probs=94.7
Q ss_pred HHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhH
Q 011721 61 VVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKT 140 (479)
Q Consensus 61 ~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~ 140 (479)
.---+..+...-|++-++|++++|+-+.+++.++ -....-..+|+.+|++|++.......... ....++...
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLA----EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~----~~~~~g~~~ 247 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLA----EEEASTIVEAEELLRQAVKAGEASLGKSQ----FLQHHGHFW 247 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcc----cccccCHHHHHHHHHHHHHHHHHhhchhh----hhhcccchh
Confidence 3345677888888899999999998766543221 22355679999999999998655432110 000011100
Q ss_pred HHhhh-hh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-H--HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 141 QITLV-QE--LSRISGNLAWAYLQQNDYESAERYYMKALSLESDK-N--KQCNLAICLIRLNRIAEAKSLLQAVR 209 (479)
Q Consensus 141 ~l~L~-pe--~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn-a--~a~nLG~~L~~lGr~dEAi~l~kAL~ 209 (479)
..... +- ...+-..||++..++|+.+||++.|+..++..|.. . ..+||..+|+.+++|.++..++....
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 00000 11 12355789999999999999999999999988763 3 23459999999999999999554443
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.19 E-value=0.11 Score=54.99 Aligned_cols=175 Identities=17% Similarity=0.118 Sum_probs=102.4
Q ss_pred CCCCcHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHH
Q 011721 16 PAGDSPYVRAK--RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDN 93 (479)
Q Consensus 16 p~~~~pyv~a~--~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~ 93 (479)
.+.+-|.++.. +..+.+|+++.|..-|+..+.....-.-.+..|-.--..+|.++.|+.+-+.+-...|.-+.+..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~-- 192 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAAR-- 192 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHH--
Confidence 34455766543 55688999999999997665432221122333333446789999999999999999998654332
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhch--hHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTE--EVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p--~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
++..-....|+++.|+..........- ...+ +....-.+.--+..+.. -+...|...
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a--------------------eR~rAvLLtAkA~s~ld-adp~~Ar~~ 251 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA--------------------ERSRAVLLTAKAMSLLD-ADPASARDD 251 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH--------------------HHHHHHHHHHHHHHHhc-CChHHHHHH
Confidence 333567789999999999887665410 0000 00000111111222221 235556666
Q ss_pred HHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 172 YMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 172 yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
-..++++.|+...+-. -+..|+..|+..++-. ++.+-+.+|.
T Consensus 252 A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 252 ALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 6666666666654433 5666666666666666 4555555553
No 212
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.17 E-value=0.001 Score=44.65 Aligned_cols=33 Identities=27% Similarity=0.175 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+++.+|.++..+|++++|++.|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467888888888888888888888888888864
No 213
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.012 Score=60.27 Aligned_cols=165 Identities=12% Similarity=0.034 Sum_probs=113.5
Q ss_pred hhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH-------------
Q 011721 13 HKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF------------- 79 (479)
Q Consensus 13 ~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~leka------------- 79 (479)
.+.|-+--..-..++.+....++..|..+|.+.-...|......+--+..+.+.+.+.+|+.....+
T Consensus 38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqL 117 (459)
T KOG4340|consen 38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQL 117 (459)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455443344456677777889999999999988899988776666777788888888887654322
Q ss_pred ---HHh--------------cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHH
Q 011721 80 ---RCL--------------CADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQI 142 (479)
Q Consensus 80 ---l~l--------------~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l 142 (479)
+.. -|....+...+..|.+..+.|++++|+.-|+.|++.. |-
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs-------Gy-------------- 176 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS-------GY-------------- 176 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc-------CC--------------
Confidence 211 1211111111223567788899999999999988761 10
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-------------------------HHHHH-HHHHH
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL----ESDK-------------------------NKQCN-LAICL 192 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL----dPdn-------------------------a~a~n-LG~~L 192 (479)
.+-+-++++.++++.|+|+.|+++....++. .|.. ..++| .+.++
T Consensus 177 -----qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 177 -----QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred -----CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 1125589999999999999999999888875 2322 13456 67788
Q ss_pred HHcCCHHHHHH
Q 011721 193 IRLNRIAEAKS 203 (479)
Q Consensus 193 ~~lGr~dEAi~ 203 (479)
.+.|+++.|.+
T Consensus 252 yq~~n~eAA~e 262 (459)
T KOG4340|consen 252 YQLRNYEAAQE 262 (459)
T ss_pred hhcccHHHHHH
Confidence 88888888876
No 214
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.047 Score=58.97 Aligned_cols=207 Identities=14% Similarity=0.043 Sum_probs=146.5
Q ss_pred chHHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 4 KDEELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 4 ~~~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
|+.++++-+++.--+-...++.++-...++++..|...|++||..+-.+...+...+..-.......-|..++.+++.+-
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 56677777777766555666666667788999999999999999888888888888999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC--------CchHHHHhhchhHHHhhhhhHHHHHHHH
Q 011721 84 ADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG--------KSTKIARSQGRKTQITLVQELSRISGNL 155 (479)
Q Consensus 84 P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~--------k~~~~A~~~g~k~~l~L~pe~~~al~nL 155 (479)
|.-.+.++-+. .+-..+|+...|...|++=+...|...+... +.-+.|+..+.++ +-..| ....+...
T Consensus 138 PRVdqlWyKY~--ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerf-V~~HP-~v~~wiky 213 (677)
T KOG1915|consen 138 PRVDQLWYKYI--YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERF-VLVHP-KVSNWIKY 213 (677)
T ss_pred chHHHHHHHHH--HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH-heecc-cHHHHHHH
Confidence 98655444332 3345789999999999999988876433211 1111232222221 11122 22456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 156 AWAYLQQNDYESAERYYMKALSLESDKNKQ---CN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 156 G~ay~~lGdydeA~~~yrKALeLdPdna~a---~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+..-...|+..-|...|++|++.-.++-.. ++ .|..-..+..++.|.. +.-||..-|.+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 777788899999999999999876665422 23 4555555677888888 66678777764
No 215
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.12 E-value=0.0012 Score=47.85 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l 91 (479)
.++..+|.+|...|++++|++.|+++++.+|+++....
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 46788999999999999999999999999999876544
No 216
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.022 Score=55.04 Aligned_cols=119 Identities=17% Similarity=0.093 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHH
Q 011721 71 EAIEAIKSFRCLCADDSQESLD-NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS 149 (479)
Q Consensus 71 EAie~lekal~l~P~da~~~l~-~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~ 149 (479)
+.+...+++...++......+. +.++..+...|++++|+..++.++..-.+..- ..
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l-----------------------k~ 126 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL-----------------------KA 126 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH-----------------------HH
Confidence 5555666666677665544332 33567889999999999999998865211000 00
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN--LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n--LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
-+-.+||.+..++|.+|+|+..+.... +++...... .|.+|+.+|+-++|+. |.+++..++..
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 144788999999999999998876543 233333333 7999999999999999 99999887543
No 217
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0048 Score=61.62 Aligned_cols=106 Identities=14% Similarity=0.017 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--------cCCChH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCL--------CADDSQ--------ESLDNVLLELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l--------~P~da~--------~~l~~aLg~lY~klGr~deAie~lekALk 117 (479)
.++..-|.-+..+|+|.||+..|+.++.. .|.+++ ..+.+....|+...|+|-+++++....|+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 56778899999999999999999887542 455542 11222234789999999999999999998
Q ss_pred hchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 118 KTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 118 l~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
.+|.+ ..+|+..|.+....-+.++|.+.|.++|+++|.-...
T Consensus 259 ~~~~n--------------------------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGN--------------------------VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCch--------------------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 86554 3599999999999999999999999999999987644
No 218
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.11 E-value=0.00077 Score=72.12 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=77.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
-+..-+.|+.|+..|.+||+++|... .++.+.+.++...++|..|+.-+.+|++
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca--------------------------~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCA--------------------------IYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcce--------------------------eeechhhhhheeechhhhHHHHHHhhhh
Confidence 34456778888888888888755432 3566777889999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++|....+|. -|.+.+.++++.+|.. ++....+.|++..
T Consensus 67 ~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 67 LDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred cCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence 9999999888 8999999999999999 8888999998766
No 219
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.10 E-value=0.00097 Score=45.22 Aligned_cols=32 Identities=28% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
.+++++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888888888888888888888888886
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.05 E-value=0.021 Score=51.16 Aligned_cols=95 Identities=23% Similarity=0.252 Sum_probs=70.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC--C------C--------------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAG--D------R--------------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~--p------~--------------~~~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
+......++.+.++..+.+++.+- + . ...++..++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 344456789999999999999731 1 1 12445568888999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH
Q 011721 84 ADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV 122 (479)
Q Consensus 84 P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~ 122 (479)
|-+-.. ...+..+|..+|++.+|+..|++......+-
T Consensus 93 P~~E~~--~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 93 PYDEEA--YRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp TT-HHH--HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHH--HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 987544 3446689999999999999999998875443
No 221
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.035 Score=59.89 Aligned_cols=156 Identities=13% Similarity=0.038 Sum_probs=118.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 29 QLVEKDPSRAISLFWAAINAGDR----VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~----~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
.+...|.+.+...|+.+|++-|. ++..+...|....++.+...|.+++-.++..+|.+--. .+.+.+-.+++.
T Consensus 376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF---k~YIelElqL~e 452 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF---KGYIELELQLRE 452 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH---HHHHHHHHHHhh
Confidence 45678999999999999998775 55677788888999999999999999999999986422 233455667788
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
+|....+|++-|.-.|.. -.++...|.+-..+|+.+-|...|+-|+....-+..
T Consensus 453 fDRcRkLYEkfle~~Pe~--------------------------c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFSPEN--------------------------CYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHHHHHHHHHHhcChHh--------------------------hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 888888888877775554 347888888888889999999999888876544432
Q ss_pred HHH---HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 185 QCN---LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 185 a~n---LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
.+. .-..-...|.++.|.. +.+.|...+.
T Consensus 507 ellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 507 ELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 222 3334456788888888 7777776654
No 222
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0042 Score=64.15 Aligned_cols=96 Identities=27% Similarity=0.226 Sum_probs=76.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|+-|.+..+|..|+..|.+.|+..-.... -++-.|+|.+.+.+.+|+|-.|+.-..+|
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~d----------------------lnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPD----------------------LNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCcc----------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888876211100 02247899999999999999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+.++|.+..++. =|.|+.++.++++|.. +...+.++-+
T Consensus 146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999888 8999999999999988 7777666544
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.00 E-value=0.028 Score=58.95 Aligned_cols=137 Identities=19% Similarity=0.120 Sum_probs=101.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHCCChHHHHHHHHHHHHhcC----CChHHHH---
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRCLCA----DDSQESL--- 91 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~------~Al~~LA~vL~~~GrydEAie~lekal~l~P----~da~~~l--- 91 (479)
.+.+++..+.++++++.|++|++...+.. ..+..||.++.+..++++|+-...++.++-. ++....+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 34566777889999999999998543322 3456799999999999999998888776633 2222111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 92 -DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 92 -~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
.+-++..|..+|+.-+|.++.++|.++ |..+|... -.+..+.-+|.||...|+.+.|..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~kl--------------al~~Gdra------~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKL--------------ALQHGDRA------LQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHH--------------HHHhCChH------HHHHHHHHHHHHHHhcccHhHHHH
Confidence 122457789999999999999999987 22233221 123466788999999999999999
Q ss_pred HHHHHHHcCCC
Q 011721 171 YYMKALSLESD 181 (479)
Q Consensus 171 ~yrKALeLdPd 181 (479)
-|+.|......
T Consensus 268 rYe~Am~~m~~ 278 (518)
T KOG1941|consen 268 RYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHhh
Confidence 99999987543
No 224
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.00 E-value=0.018 Score=58.14 Aligned_cols=134 Identities=13% Similarity=0.027 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ-LDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~-~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~kl 102 (479)
..+......+..+.|...|.+|++..+-....|...|.+-.. .++.+-|..+|+.+++..|.+...++.+ ++.+...
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y--~~~l~~~ 83 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEY--LDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHH--HHHHHHT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHH--HHHHHHh
Confidence 333333344457777777777775544445566666666555 4444447777777777777765544332 2555666
Q ss_pred CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 103 KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
|+.+.|..+|++++...+.... ...+|......-...|+.+.....++++.++-|++
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~-----------------------~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQ-----------------------SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHH-----------------------CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred CcHHHHHHHHHHHHHhcCchhH-----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 7777777777776665222110 01234444444455566666666666666666664
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.032 Score=57.01 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=102.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHH
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEE 107 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~de 107 (479)
..+..+++.+|...|..++...|....+...|+.+|...|++++|..+|..+ |.+....-.. + ...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~---------~-l~a 208 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAH---------G-LQA 208 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHH---------H-HHH
Confidence 3466799999999999999999999999999999999999999999888653 3322110000 0 112
Q ss_pred HHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HH
Q 011721 108 EIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN--KQ 185 (479)
Q Consensus 108 Aie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna--~a 185 (479)
.++.+.++-..-+- .. ....+.-+|++.++-+.||..|...|++++|.+++-..+..+-+.. ..
T Consensus 209 ~i~ll~qaa~~~~~-~~-------------l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 209 QIELLEQAAATPEI-QD-------------LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred HHHHHHHHhcCCCH-HH-------------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 24444444333110 00 0011345788888999999999999999999999999998876654 33
Q ss_pred HH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 186 CN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 186 ~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
.. |-.++...|.-+.+.. +.+.
T Consensus 275 Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 275 RKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHH
Confidence 33 5556655553333333 4443
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.1 Score=52.30 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=105.1
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC-----CCh
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA-----DDS 87 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~------~~~Al~~LA~vL~~~GrydEAie~lekal~l~P-----~da 87 (479)
.+-|.++...+-..++|++|...+.+|++-..+ ...++-..|.++.....+.|+..+|+++..+.- +-+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 356777777777889999999999999863322 234566778888889999999999998766532 222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
...+.. +.=....-+.++|+..|++++.+..... .. .-..+.+...+.+|.+..+|++
T Consensus 111 AmaleK--Aak~lenv~Pd~AlqlYqralavve~~d-----r~---------------~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 111 AMALEK--AAKALENVKPDDALQLYQRALAVVEEDD-----RD---------------QMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred HHHHHH--HHHHhhcCCHHHHHHHHHHHHHHHhccc-----hH---------------HHHHHHHHHhhhHhhhhHHhhH
Confidence 111111 1112345567777777777777633211 00 0112467778889999999999
Q ss_pred HHHHHHHHHHcCC----CCH--HHHH-HHHHHHHcCCHHHHHHHHH
Q 011721 168 AERYYMKALSLES----DKN--KQCN-LAICLIRLNRIAEAKSLLQ 206 (479)
Q Consensus 168 A~~~yrKALeLdP----dna--~a~n-LG~~L~~lGr~dEAi~l~k 206 (479)
|-..+.|-..+.- -+. ..+. +-.+|+...+|..|..+.+
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 9888887554421 111 2222 3445555568888888443
No 227
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.95 E-value=0.0013 Score=45.82 Aligned_cols=29 Identities=48% Similarity=0.664 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
+|.+||.+|..+|+|++|+.+|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999977654
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.015 Score=60.32 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=89.5
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-chhHHhcCCCchHHHHhh
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK-TEEVIACGGKSTKIARSQ 136 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl-~p~~la~~~k~~~~A~~~ 136 (479)
.-+.++...|++-+|.....+++...|.+.-+.- .--+++.-.|+.+.-...+++.+-. ++...
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~k--fsh~a~fy~G~~~~~k~ai~kIip~wn~dlp------------- 172 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVK--FSHDAHFYNGNQIGKKNAIEKIIPKWNADLP------------- 172 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhh--hhhhHHHhccchhhhhhHHHHhccccCCCCc-------------
Confidence 3456667778888888778888888887632110 0115566677777777777666544 22111
Q ss_pred chhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 011721 137 GRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQA 207 (479)
Q Consensus 137 g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kA 207 (479)
=...+...++..+...|-|++|++.-++|++|+|.+.-+.+ ++.++.-.|+++|+.++..-
T Consensus 173 ----------~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 173 ----------CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred ----------HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 11235567788899999999999999999999999998877 99999999999999995543
No 229
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.86 E-value=0.0017 Score=69.51 Aligned_cols=116 Identities=9% Similarity=0.007 Sum_probs=75.6
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchh
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRK 139 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k 139 (479)
+......+.|+.|+..|.+++.++|+.+...-+.+ .++.+.+++..|+.-+.+|+++.|...
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa--~a~lK~e~~~~Al~Da~kaie~dP~~~---------------- 72 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRA--LAHLKVESFGGALHDALKAIELDPTYI---------------- 72 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhh--hhheeechhhhHHHHHHhhhhcCchhh----------------
Confidence 33444455556666666666666665443222222 345666666666666666666644432
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHH--HHHcCCHHHHHH
Q 011721 140 TQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAIC--LIRLNRIAEAKS 203 (479)
Q Consensus 140 ~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~--L~~lGr~dEAi~ 203 (479)
.+|+..|.+.+.++.+.+|...|++...+.|+++.+.. +..| ...+-.|+.|+.
T Consensus 73 ----------K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~ 129 (476)
T KOG0376|consen 73 ----------KAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAIL 129 (476)
T ss_pred ----------heeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence 37788899999999999999999999999999997754 4444 344445666655
No 230
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.81 E-value=0.099 Score=50.65 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 57 KDMAVVMKQLDRSEEAIEAIKSFRCLCADD-SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 57 ~~LA~vL~~~GrydEAie~lekal~l~P~d-a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
+.+|..+.+.|++++|+..++.++...-+. .......-|+.+...+|.+|+|+..+...-.-.=
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--------------- 157 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--------------- 157 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH---------------
Confidence 467888999999999999999888654432 2233444567888999999999887763222100
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
.+..-...|.+|..+|+-++|...|++|++.+++.+
T Consensus 158 ------------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 158 ------------AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred ------------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 012346679999999999999999999999996665
No 231
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.25 Score=53.69 Aligned_cols=192 Identities=17% Similarity=0.077 Sum_probs=125.1
Q ss_pred HHHcCCHHHHHHHHHHHHH---cCCC-------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC-CChHHHHHHHHHH
Q 011721 29 QLVEKDPSRAISLFWAAIN---AGDR-------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA-DDSQESLDNVLLE 97 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~---l~p~-------~~~Al~~LA~vL~~~GrydEAie~lekal~l~P-~da~~~l~~aLg~ 97 (479)
.+..+++.+|+.....+.. ..|. ....+..+|.-...-+.|+.|...|..+.++-. .+..+..+..++.
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 3567999999988887765 3343 223455688888889999999999988877643 3455666666788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
.|.+.|+-+.--+.++ .+.|..- .....+. ....+++..|...+.++++.||...+++.|.
T Consensus 413 ~YL~~~~~ed~y~~ld---~i~p~nt-------~s~ssq~---------l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALD---LIGPLNT-------NSLSSQR---------LEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHhccHHHHHHHHH---hcCCCCC-------CcchHHH---------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 9999887654333322 2222210 0000000 1124788889999999999999999999999
Q ss_pred cCCC-C-H--HH--HH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 011721 178 LESD-K-N--KQ--CN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 178 LdPd-n-a--~a--~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
+... + . .+ +. ||.+....|+..|+.. ..-++.+..+-..+... + -...+++.+..+...+|.
T Consensus 474 manaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq-L----ws~si~~~L~~a~g~~~~ 543 (629)
T KOG2300|consen 474 MANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ-L----WSSSILTDLYQALGEKGN 543 (629)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH-H----HHHHHHHHHHHHhCcchh
Confidence 8621 1 1 11 23 8889999999999999 77788877654432111 1 112345555556555554
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.78 E-value=0.074 Score=56.33 Aligned_cols=156 Identities=19% Similarity=0.094 Sum_probs=125.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
.++-+.+.+.|+..|...-..++++.|+...+-..-+..|...|+..++-.+++.+.+.+|.-. ++.+|....
T Consensus 234 tAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-------ia~lY~~ar 306 (531)
T COG3898 234 TAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-------IALLYVRAR 306 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-------HHHHHHHhc
Confidence 3444556778999999999999999999888888888999999999999999999999998532 223455544
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
--+-++.-++++-++ .++.|++.+.....+.+-+.-|+|..|..--+.+..+.|...
T Consensus 307 ~gdta~dRlkRa~~L-----------------------~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres 363 (531)
T COG3898 307 SGDTALDRLKRAKKL-----------------------ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES 363 (531)
T ss_pred CCCcHHHHHHHHHHH-----------------------HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh
Confidence 445566666666555 356788888999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHc-CCHHHHHH-HHHHHH
Q 011721 184 KQCNLAICLIRL-NRIAEAKS-LLQAVR 209 (479)
Q Consensus 184 ~a~nLG~~L~~l-Gr~dEAi~-l~kAL~ 209 (479)
.+..|+.+-... |+-.++.. +-+++.
T Consensus 364 ~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 364 AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 666688877554 99999999 777776
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.76 E-value=0.021 Score=61.97 Aligned_cols=125 Identities=18% Similarity=-0.033 Sum_probs=97.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHHcCCHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE--SLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~--~l~~aLg~lY~klGr~deA 108 (479)
...+.+.|...+......-|+-.-.+...|.++...|+.++|++.|++++.....-.+. ....-++.++.-+++|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 35678889999999999999988778889999999999999999999887533332222 2223356789999999999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCC
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY-------ESAERYYMKALSLES 180 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy-------deA~~~yrKALeLdP 180 (479)
..+|.+.++...-.. .-+.+..|.+|...|+. ++|.++|+++-.+-.
T Consensus 325 ~~~f~~L~~~s~WSk-------------------------a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 325 AEYFLRLLKESKWSK-------------------------AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHhccccHH-------------------------HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999888632211 12667889999999999 888888888876644
No 234
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.73 E-value=0.0023 Score=42.50 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
++++++|.+|..+|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 378999999999999999999999999999974
No 235
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.24 Score=49.41 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=97.3
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhcCCChH-HH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDR------VDSALKDMAVVMKQL-DRSEEAIEAIKSFRCLCADDSQ-ES 90 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~------~~~Al~~LA~vL~~~-GrydEAie~lekal~l~P~da~-~~ 90 (479)
.+.|+.+... +...++.+|+..+.+||.+--+ .+.-+..+|.+|-.. .++++||.+|+++-+....+-. ..
T Consensus 74 at~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 74 ATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 3577777654 4566999999999999985322 122345788888664 9999999999998877655422 22
Q ss_pred HHHHH---HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 91 LDNVL---LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 91 l~~aL---g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
.+-++ +..-..+|+|.+||..|++.....-+... +.-...+.++.-|.+++-..+.-.
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L-------------------LKys~KdyflkAgLChl~~~D~v~ 213 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL-------------------LKYSAKDYFLKAGLCHLCKADEVN 213 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-------------------HHhHHHHHHHHHHHHhHhcccHHH
Confidence 22221 23334456666666666665543111000 000112467788999999999999
Q ss_pred HHHHHHHHHHcCCCCHHH
Q 011721 168 AERYYMKALSLESDKNKQ 185 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a 185 (479)
|...+++-.+++|...+.
T Consensus 214 a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 214 AQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHhcCCccccc
Confidence 999999999999998754
No 236
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.63 E-value=0.13 Score=57.27 Aligned_cols=230 Identities=16% Similarity=0.172 Sum_probs=147.6
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCc-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAIN-AGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~-l~p~~-----~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
+++.|.++.... ..+-+.++++.+-+.-|..|+. .+|.. ...+..+|.+|-..|+.+.|..+|+++....=.
T Consensus 342 LRQn~~nV~eW~--kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWH--KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHH--hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 455565554442 3456678999999999999997 56652 345678999999999999999999999887533
Q ss_pred ChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--hhHHhcCCCchHHHHh----------------hc--hhHH--
Q 011721 86 DSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKT--EEVIACGGKSTKIARS----------------QG--RKTQ-- 141 (479)
Q Consensus 86 da~--~~l~~aLg~lY~klGr~deAie~lekALkl~--p~~la~~~k~~~~A~~----------------~g--~k~~-- 141 (479)
... +.+....+..=.+..+++.|+.+.++|...= |....+++.....++. .| ...+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 221 1122223456667888899999888888651 1112222211111111 11 0000
Q ss_pred ----HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHH--HHHHHHHcC--CHHHHHH-HHHHHHh
Q 011721 142 ----ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES--DKNKQCN--LAICLIRLN--RIAEAKS-LLQAVRA 210 (479)
Q Consensus 142 ----l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP--dna~a~n--LG~~L~~lG--r~dEAi~-l~kAL~l 210 (479)
+.|.--.+.+..|.|+.+....-+++|.+.|++.+.|-| .--+.++ |-.....-| +.+.|.. +++||..
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 344445567889999999999999999999999999964 3346676 555444444 7889999 8999998
Q ss_pred cCCCc-cch-H---HHHHHHHHHHHHHHHHHhhhhcCC
Q 011721 211 SSRNE-KMD-E---SYAKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 211 ~P~n~-~a~-~---~~~k~~~rA~eaL~el~~a~~~~P 243 (479)
.|... +-. . .+-..++.|..+++.++++..--+
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 88421 111 1 112344666666666666544333
No 237
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.61 E-value=0.042 Score=55.50 Aligned_cols=130 Identities=13% Similarity=0.028 Sum_probs=77.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR-SKRIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k-lGr~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
|..+.....+.+..+.|..+|.+++...+-..+.++.. +.+-.. .++.+.|...|+.+++.+|...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~--A~~E~~~~~d~~~A~~Ife~glk~f~~~~----------- 70 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAY--ALMEYYCNKDPKRARKIFERGLKKFPSDP----------- 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHH--HHHHHHTCS-HHHHHHHHHHHHHHHTT-H-----------
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHHCCCCH-----------
Confidence 44555666666668888888888874433333333333 334333 4555558888888887755432
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
.++......+...|+.+.|...|++++..-|... ..|. ....-...|+.+.... ..++..
T Consensus 71 ---------------~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 71 ---------------DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2555555666777888888888888887766654 2444 5555556676666666 445555
Q ss_pred hcCC
Q 011721 210 ASSR 213 (479)
Q Consensus 210 l~P~ 213 (479)
..|+
T Consensus 136 ~~~~ 139 (280)
T PF05843_consen 136 LFPE 139 (280)
T ss_dssp HTTT
T ss_pred Hhhh
Confidence 5554
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.057 Score=54.10 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCc
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKS 129 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~ 129 (479)
+.|..-+..|....+|++|..++.++.+-..++.. +...-..+.+...+..+.|+..+|++|..++-+...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs----- 106 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS----- 106 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-----
Confidence 34555678889999999999999998865444321 111112345677888899999999999988644221
Q ss_pred hHHHHhhchhHHHhhhhhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHH-HHHHHHHcCCHHHH
Q 011721 130 TKIARSQGRKTQITLVQELS-RISGNLAWAYLQQNDYESAERYYMKALSLESDKN------KQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 130 ~~~A~~~g~k~~l~L~pe~~-~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna------~a~n-LG~~L~~lGr~dEA 201 (479)
|+.+ .++-.-| =....-+.++|+.+|++++++--... +.+- ++.+|....+|+||
T Consensus 107 ----------------pdtAAmaleKAa-k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 107 ----------------PDTAAMALEKAA-KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred ----------------cchHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 1111 1222222 24567889999999999999744432 2234 88999999999999
Q ss_pred HH-HHHH
Q 011721 202 KS-LLQA 207 (479)
Q Consensus 202 i~-l~kA 207 (479)
-. +++-
T Consensus 170 a~a~lKe 176 (308)
T KOG1585|consen 170 ATAFLKE 176 (308)
T ss_pred HHHHHHh
Confidence 98 6653
No 239
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.58 E-value=0.0039 Score=38.92 Aligned_cols=33 Identities=42% Similarity=0.623 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
.+++++|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 367899999999999999999999999998864
No 240
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.49 E-value=0.16 Score=51.39 Aligned_cols=145 Identities=14% Similarity=0.041 Sum_probs=95.7
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH-hcCC
Q 011721 51 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS--QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI-ACGG 127 (479)
Q Consensus 51 ~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da--~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~l-a~~~ 127 (479)
.....+..++.+....|+++-|..++.++...++... ...+....+.+.-..|+..+|+..++..+....... ....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4456778899999999999999999999888663211 112223345778889999999999999998322111 0000
Q ss_pred CchHH-HH----h--hchhHHHhhhhhHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHH
Q 011721 128 KSTKI-AR----S--QGRKTQITLVQELSRISGNLAWAYLQQ------NDYESAERYYMKALSLESDKNKQCN-LAICLI 193 (479)
Q Consensus 128 k~~~~-A~----~--~g~k~~l~L~pe~~~al~nLG~ay~~l------GdydeA~~~yrKALeLdPdna~a~n-LG~~L~ 193 (479)
..... .. . .............+.++..+|.....+ +.+++++..|++|+.++|+...++. +|..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 00000 00 0 000000011122346889999999888 9999999999999999999998776 887765
Q ss_pred Hc
Q 011721 194 RL 195 (479)
Q Consensus 194 ~l 195 (479)
..
T Consensus 304 ~~ 305 (352)
T PF02259_consen 304 KL 305 (352)
T ss_pred HH
Confidence 54
No 241
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.40 E-value=0.16 Score=50.55 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC
Q 011721 148 LSRISGNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN 196 (479)
Q Consensus 148 ~~~al~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG 196 (479)
++.+.++||.+|.. ..++.+|..+|.+|.+... ...+. ++ ++...|
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 34588999988764 3499999999999999988 54444 88 666666
No 242
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.40 E-value=0.17 Score=45.60 Aligned_cols=100 Identities=15% Similarity=-0.032 Sum_probs=57.5
Q ss_pred HHCCChHHHHHHHHHHHHhc---CC-Ch------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 64 KQLDRSEEAIEAIKSFRCLC---AD-DS------QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 64 ~~~GrydEAie~lekal~l~---P~-da------~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.+.|-|++|...++++.... |. .+ ++..+-.|...+..+|+|++++..-.++|........++....+
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk-- 97 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK-- 97 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH--
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch--
Confidence 34456666666666655442 21 11 12222335566777888888887777777764432221110000
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
-=..+.++.|.++..+|+.++|+..|+++-+.
T Consensus 98 -------------lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 98 -------------LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -------------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 01136799999999999999999999999764
No 243
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.39 E-value=0.019 Score=48.59 Aligned_cols=78 Identities=19% Similarity=0.160 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 39 ISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKL 116 (479)
Q Consensus 39 i~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekAL 116 (479)
+..+++++..+|++..+.+.+|..+...|++++|++.+..++..+++.........+..++..+|.-+.-...|++-|
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 567888999999999999999999999999999999999999998875332233344566666676555555555443
No 244
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.39 E-value=0.5 Score=56.71 Aligned_cols=153 Identities=15% Similarity=0.133 Sum_probs=123.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
-|.-+.-...|++|-+..+.+ ..|..|..+|..-+.+++|.++|+.+++..-+....+. .+++.+.++.+-+.|...
T Consensus 1510 yG~eesl~kVFeRAcqycd~~-~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~--~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYCDAY-TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWI--MYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred hCcHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHH--HHHHHHhcccHHHHHHHH
Confidence 355556667888887765432 46788999999999999999999999998875443333 345778889999999999
Q ss_pred HHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHH
Q 011721 112 LKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAI 190 (479)
Q Consensus 112 lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~ 190 (479)
+.+||.-.|+. ++.++..--+.+-++.|+-+.+...|+-.|.-.|.--+.|+ +..
T Consensus 1587 L~rAL~~lPk~------------------------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1587 LKRALKSLPKQ------------------------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred HHHHHhhcchh------------------------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 99999986652 22346667788888999999999999999999999999998 888
Q ss_pred HHHHcCCHHHHHH-HHHHHHhc
Q 011721 191 CLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 191 ~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.-+..|+.+.+.. |++++.+.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcC
Confidence 8899999999999 88887654
No 245
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.37 E-value=0.0016 Score=67.35 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=75.8
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
...|.+++||+.|..||.++|.. +.+|...|.|++.+++...|++.|..|++|+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~--------------------------a~l~~kr~sv~lkl~kp~~airD~d~A~ein 178 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPL--------------------------AILYAKRASVFLKLKKPNAAIRDCDFAIEIN 178 (377)
T ss_pred hcCcchhhhhcccccccccCCch--------------------------hhhcccccceeeeccCCchhhhhhhhhhccC
Confidence 35678888888888888876543 3477888999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 180 SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
||.+..|. -|.+...+|++++|.. +..+++++-+
T Consensus 179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99998887 8999999999999999 8888887643
No 246
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.35 E-value=0.53 Score=52.73 Aligned_cols=222 Identities=14% Similarity=0.046 Sum_probs=131.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC----------ChH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGD----RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD----------DSQ 88 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p----~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~----------da~ 88 (479)
+..+..+-..|+.+.|...|.+|++.+- +.+..+.+-|..-.+..+++.|..+++.+...--. .++
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 3455677888999999999999998542 34567778888888999999999999987654111 123
Q ss_pred HHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhc---hhHHh----cCCCc--hHHHHhhchhHHHhh--hhhHHHH
Q 011721 89 ESLDNV------LLELYKRSKRIEEEIELLKRKLKKT---EEVIA----CGGKS--TKIARSQGRKTQITL--VQELSRI 151 (479)
Q Consensus 89 ~~l~~a------Lg~lY~klGr~deAie~lekALkl~---p~~la----~~~k~--~~~A~~~g~k~~l~L--~pe~~~a 151 (479)
..+... ++++-...|-++.-...|++.|.+. |+.+. +...+ ...+...+.+. +.| -|...++
T Consensus 471 ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErg-I~LFk~p~v~di 549 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERG-ISLFKWPNVYDI 549 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcC-CccCCCccHHHH
Confidence 333322 3466777888888888888888773 33221 00000 01111111110 122 2333455
Q ss_pred HHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHH--HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHH
Q 011721 152 SGNL---AWAYLQQNDYESAERYYMKALSLESDKN-KQCN--LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKS 224 (479)
Q Consensus 152 l~nL---G~ay~~lGdydeA~~~yrKALeLdPdna-~a~n--LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~ 224 (479)
|+.. ...-+.--+.+-|...|++||+.-|-.. .... .|..--+-|-...|+. +.+|-..-+. +...+.+-..
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~-a~~l~myni~ 628 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE-AQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Confidence 5332 3334455688999999999999888322 3322 3444445588888888 7776433221 1112333345
Q ss_pred HHHHHHHHH------HHHhhhhcCCCCh
Q 011721 225 FEHASLMLT------ELESQSMLQPTDY 246 (479)
Q Consensus 225 ~~rA~eaL~------el~~a~~~~P~~~ 246 (479)
..+|.+++. .+++++..-|++-
T Consensus 629 I~kaae~yGv~~TR~iYekaIe~Lp~~~ 656 (835)
T KOG2047|consen 629 IKKAAEIYGVPRTREIYEKAIESLPDSK 656 (835)
T ss_pred HHHHHHHhCCcccHHHHHHHHHhCChHH
Confidence 566766652 4455666666533
No 247
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.35 E-value=0.008 Score=40.47 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
.+++.+|.+|..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677788888888888888888887777774
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.29 E-value=0.31 Score=51.66 Aligned_cols=173 Identities=13% Similarity=0.046 Sum_probs=100.3
Q ss_pred HcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---CCChHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHH--
Q 011721 31 VEKDPSRAISLFWAAINA----GDRVDSALKDMAVVMKQ---LDRSEEAIEAIKSFRCL-CADDSQESLDNVLLELYK-- 100 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l----~p~~~~Al~~LA~vL~~---~GrydEAie~lekal~l-~P~da~~~l~~aLg~lY~-- 100 (479)
.-+||+.-+.+.+..-.+ -.+........|.+|.+ .|+.++|+..+..++.. .+.+++.. ..+|.+|.
T Consensus 153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~--gL~GRIyKD~ 230 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL--GLLGRIYKDL 230 (374)
T ss_pred hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH--HHHHHHHHHH
Confidence 336777777777654333 12233445678899988 99999999999985544 44444432 22343433
Q ss_pred --H-----cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 101 --R-----SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 101 --k-----lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
. ....++|+..|.++.++.|..- .-.|++.++...|.-.+.....+
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y---------------------------~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDYY---------------------------SGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCcccc---------------------------chHHHHHHHHHcCCcccchHHHH
Confidence 3 2347888888888888865311 01233333333333222222222
Q ss_pred HHH-----------HcCCCCHHHH--H-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhh
Q 011721 174 KAL-----------SLESDKNKQC--N-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQ 238 (479)
Q Consensus 174 KAL-----------eLdPdna~a~--n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a 238 (479)
+.. .+++. .+.| - ++.+..-.|++++|+. +.+++.+.|..-. +++.-+-..++.++.+.
T Consensus 284 ~i~~~l~~llg~kg~~~~~-~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~-----l~St~~ni~Li~~~~~~ 357 (374)
T PF13281_consen 284 KIGVKLSSLLGRKGSLEKM-QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE-----LESTLENIKLIRHFRKR 357 (374)
T ss_pred HHHHHHHHHHHhhcccccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh-----HHHHHHHHHHHHHHhcC
Confidence 211 01122 2222 2 7778888999999999 8889998876432 34445556666666654
No 249
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.28 E-value=0.16 Score=58.02 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------CCCCHHHH-HHHHHHHHcCCHHHHHH-HHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSL---------------------ESDKNKQC-NLAICLIRLNRIAEAKS-LLQ 206 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeL---------------------dPdna~a~-nLG~~L~~lGr~dEAi~-l~k 206 (479)
..|.--|..+...|+.+.|+.+|..|-.- ...+-.++ +||.-|-..|++-+|+. +.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46667788888899999999999876442 23333444 49999999999999998 554
Q ss_pred H
Q 011721 207 A 207 (479)
Q Consensus 207 A 207 (479)
|
T Consensus 993 A 993 (1416)
T KOG3617|consen 993 A 993 (1416)
T ss_pred H
Confidence 3
No 250
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.26 E-value=0.018 Score=62.16 Aligned_cols=155 Identities=17% Similarity=0.044 Sum_probs=106.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH-HHHhcCC------ChHHHHHHHHHHHHHHc
Q 011721 30 LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS-FRCLCAD------DSQESLDNVLLELYKRS 102 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lek-al~l~P~------da~~~l~~aLg~lY~kl 102 (479)
+...+...+....+-++....+.+.++...+..+.-.|+|..|.+.+.. -+...|. -..-.+++.||.++.+.
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~ 296 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL 296 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh
Confidence 3334555555555555666667777888889999999999999998754 2333333 11122334577889999
Q ss_pred CCHHHHHHHHHHHHH-hchhHH-hcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 103 KRIEEEIELLKRKLK-KTEEVI-ACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 103 Gr~deAie~lekALk-l~p~~l-a~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
|.|.-++.+|.+||+ ...... ++.+... ..+... ..-++++|.|..|+..|+.-.|.++|.+|...--
T Consensus 297 ~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~-~tls~n---------ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 297 GCYQASSVLFLKALRNSCSQLRNGLKPAKT-FTLSQN---------KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCcc-eehhcc---------cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 999999999999997 222211 1111000 000000 1125899999999999999999999999999999
Q ss_pred CCHHHHH-HHHHHHH
Q 011721 181 DKNKQCN-LAICLIR 194 (479)
Q Consensus 181 dna~a~n-LG~~L~~ 194 (479)
.+|..|. ||.|.+.
T Consensus 367 ~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIM 381 (696)
T ss_pred cCcHHHHHHHHHHHH
Confidence 9998888 9988864
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.25 E-value=0.19 Score=53.13 Aligned_cols=123 Identities=15% Similarity=0.222 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhchhHHhc
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCL----CADDSQESLDNVLLELYKR---SKRIEEEIELLKRKLKKTEEVIAC 125 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l----~P~da~~~l~~aLg~lY~k---lGr~deAie~lekALkl~p~~la~ 125 (479)
.+...+|=..|....+|+.-+...+.+-.+ -++.......+ +.++.+ .|+.++|+..+..++...
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~y--afALnRrn~~gdre~Al~il~~~l~~~------ 212 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQY--AFALNRRNKPGDREKALQILLPVLESD------ 212 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHH--HHHHhhcccCCCHHHHHHHHHHHHhcc------
Confidence 355677888899999999999999887666 23333333333 344556 899999999999876542
Q ss_pred CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC
Q 011721 126 GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ---------QNDYESAERYYMKALSLESDKNKQCNLAICLIRLN 196 (479)
Q Consensus 126 ~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~---------lGdydeA~~~yrKALeLdPdna~a~nLG~~L~~lG 196 (479)
...+++.+..+|.+|-. ....++|+..|+++.+++|+.-...|++.++...|
T Consensus 213 -------------------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 213 -------------------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAG 273 (374)
T ss_pred -------------------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcC
Confidence 12233456666665543 23489999999999999998877888888888888
Q ss_pred CHHHHH
Q 011721 197 RIAEAK 202 (479)
Q Consensus 197 r~dEAi 202 (479)
.-.+..
T Consensus 274 ~~~~~~ 279 (374)
T PF13281_consen 274 HDFETS 279 (374)
T ss_pred Ccccch
Confidence 644443
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.097 Score=54.59 Aligned_cols=159 Identities=10% Similarity=-0.097 Sum_probs=119.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-cCCChHH-HHHHHHHHHHHHcCCHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL-CADDSQE-SLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l-~P~da~~-~l~~aLg~lY~klGr~deA 108 (479)
..|++.+|.....+.++..|.+--++..--.++...|+.+.-...+++++-. +|+-+-. +++-.++..+...|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3456666667777888888888877777778899999999999999998877 6665432 2333345678899999999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--H--
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN--K-- 184 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna--~-- 184 (479)
.+.-.+++.+++. +..+...++.++...|++.++.++..+.-..--+.- .
T Consensus 195 Ek~A~ralqiN~~--------------------------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH 248 (491)
T KOG2610|consen 195 EKQADRALQINRF--------------------------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH 248 (491)
T ss_pred HHHHHhhccCCCc--------------------------chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence 9999999998554 334667788899999999999999888765544322 1
Q ss_pred -HHHHHHHHHHcCCHHHHHH-HHHHH--HhcCCCc
Q 011721 185 -QCNLAICLIRLNRIAEAKS-LLQAV--RASSRNE 215 (479)
Q Consensus 185 -a~nLG~~L~~lGr~dEAi~-l~kAL--~l~P~n~ 215 (479)
.++-|.++++-+.|+.|+. |.+-+ .+..+++
T Consensus 249 NyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 2337899999999999999 76654 3455554
No 253
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.11 E-value=0.0091 Score=39.59 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
+|++.+|.++...|++++|++.|++++...|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36788888888888888888888888888886
No 254
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.10 E-value=0.017 Score=44.47 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+.++.||..++++|+|++|..+.+.+|+++|+|..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 36788999999999999999999999999999987765
No 255
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.02 E-value=0.2 Score=57.32 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHH----------HHHhcCCChH--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKS----------FRCLCADDSQ--------ESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lek----------al~l~P~da~--------~~l~~aLg~lY~klGr~deAie~lek 114 (479)
...|++.|.-|...++.+.|+++|++ ++..+|.... ..+....|..+...|..+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 35678888888888999999998886 3444554322 23334456667788999999999988
Q ss_pred HHHhchhHH--hcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 115 KLKKTEEVI--ACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 115 ALkl~p~~l--a~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
|-..+.... .+.++..+.|. |.-...+..+-+.||..|...|++.+|+.+|.+|-..
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~-------iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAAR-------IAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHH-------HHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 877654321 22332222211 1222233458899999999999999999999988664
No 256
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.98 E-value=0.023 Score=48.11 Aligned_cols=49 Identities=27% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 168 AERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.+..++++++.+|++..+.. ||.+++..|++++|+. ++..+..+++...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~ 57 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED 57 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence 46678899999999988776 9999999999999999 8888888887644
No 257
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.96 E-value=0.0058 Score=63.34 Aligned_cols=95 Identities=14% Similarity=0.004 Sum_probs=74.0
Q ss_pred HHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhH
Q 011721 61 VVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKT 140 (479)
Q Consensus 61 ~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~ 140 (479)
.-....|.+++||+.|..++.++|..+..+.. -+.++.++++...||..+..|+.++|+..
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~k--r~sv~lkl~kp~~airD~d~A~ein~Dsa----------------- 182 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAK--RASVFLKLKKPNAAIRDCDFAIEINPDSA----------------- 182 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhccc--ccceeeeccCCchhhhhhhhhhccCcccc-----------------
Confidence 33456788999999999999999986644333 24678889999999999999988866532
Q ss_pred HHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 141 QITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 141 ~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
.-|-..|.+...+|++++|...++.|++++-+-.
T Consensus 183 ---------~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 183 ---------KGYKFRGYAERLLGNWEEAAHDLALACKLDYDEA 216 (377)
T ss_pred ---------cccchhhHHHHHhhchHHHHHHHHHHHhccccHH
Confidence 2445567888899999999999999999876543
No 258
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.86 E-value=0.032 Score=61.40 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=77.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
...+|+...|+.++..|+...|.-... .+.+|+.++..-|..-+|-..+.++|.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v-------------------------~~v~la~~~~~~~~~~da~~~l~q~l~~ 671 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDV-------------------------PLVNLANLLIHYGLHLDATKLLLQALAI 671 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcc-------------------------cHHHHHHHHHHhhhhccHHHHHHHHHhh
Confidence 345788999999999999888764321 4578888888888888999999999999
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE 219 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~ 219 (479)
+-..+-.+. +|.+|+.+.+.+.|++ +.+|+.++|++.....
T Consensus 672 ~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 672 NSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred cccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHH
Confidence 866665555 8999999999999999 8889999998877544
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.86 E-value=0.016 Score=40.29 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCL 82 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l 82 (479)
++.+||.+|..+|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777777777777777777775433
No 260
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.81 E-value=0.018 Score=39.93 Aligned_cols=29 Identities=38% Similarity=0.400 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.++.+||.+|..+|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 47899999999999999999999999986
No 261
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.64 E-value=0.31 Score=47.65 Aligned_cols=108 Identities=18% Similarity=0.133 Sum_probs=72.0
Q ss_pred HHHCCChHHHHHHHHHHHHh----cCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhc
Q 011721 63 MKQLDRSEEAIEAIKSFRCL----CADD-SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137 (479)
Q Consensus 63 L~~~GrydEAie~lekal~l----~P~d-a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g 137 (479)
+.....+++|++.|.-++-. ..++ ..+.+.+-++.+|..+|+.+....++++|+..+.+.........
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~------- 159 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI------- 159 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-------
Confidence 33455677777776654422 2222 12344445678999999999999999999998776543111000
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 138 ~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
-.-+...+++.+|.++++.|++++|+.+|.+++...-...
T Consensus 160 ------~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 160 ------EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred ------CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 0012234789999999999999999999999998754443
No 262
>PRK10941 hypothetical protein; Provisional
Probab=95.64 E-value=0.11 Score=52.70 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.+.||=.+|.+.++++.|+.+.+..+.++|+++.-+- .|.+|.++|.+..|.. +..-+...|+++.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 67899999999999999999999999999999997666 9999999999999999 9999999998765
No 263
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.47 E-value=0.33 Score=47.45 Aligned_cols=93 Identities=26% Similarity=0.265 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH-------HHHHHHH
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES-------AERYYMK 174 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde-------A~~~yrK 174 (479)
.-.+++|++.|.-||-...... .+.. ..+.++..+||+|..+|+-++ |+..|++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~---~~~s----------------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~ 150 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKK---EKPS----------------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE 150 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC---CCHH----------------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 4467788888887776521100 0111 123477899999999999555 5555555
Q ss_pred HHHcCCC--CH----HH-HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011721 175 ALSLESD--KN----KQ-CNLAICLIRLNRIAEAKSLLQAVRASSR 213 (479)
Q Consensus 175 ALeLdPd--na----~a-~nLG~~L~~lGr~dEAi~l~kAL~l~P~ 213 (479)
|++.... .. .. |.+|.+...+|++++|+.+...+...++
T Consensus 151 a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 151 AYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 5544422 21 22 3399999999999999995444444444
No 264
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=1.9 Score=47.15 Aligned_cols=205 Identities=18% Similarity=0.105 Sum_probs=121.1
Q ss_pred cCCHHHHHHHHHHHHHcCCC------cHH--------HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh--------HH
Q 011721 32 EKDPSRAISLFWAAINAGDR------VDS--------ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS--------QE 89 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~------~~~--------Al~~LA~vL~~~GrydEAie~lekal~l~P~da--------~~ 89 (479)
.|=+++|.++-.++|..-.+ ... .+-.+..+-.-.|++.+|++.+..+...+-..+ ..
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 34566677766666653211 111 223455666778999999999888776543322 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
.+...+|.....-|.++.|...|..|+++-....- -+.+-.|||.+|...|+-+.
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl-----------------------~a~~nlnlAi~YL~~~~~ed-- 422 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL-----------------------QAFCNLNLAISYLRIGDAED-- 422 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH-----------------------HHHHHHhHHHHHHHhccHHH--
Confidence 34444554455678899999999999987322100 11255789999999877544
Q ss_pred HHHHHHHHcCCCCH----------HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccch-------H---HHH----H
Q 011721 170 RYYMKALSLESDKN----------KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMD-------E---SYA----K 223 (479)
Q Consensus 170 ~~yrKALeLdPdna----------~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~-------~---~~~----k 223 (479)
+|+-.=.+.|.|. ..+. -|...+.++++.||.. +.+.+... |+... . ++. .
T Consensus 423 -~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~lslg 499 (629)
T KOG2300|consen 423 -LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVFLSLG 499 (629)
T ss_pred -HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHHHhc
Confidence 4443344566641 2234 6888889999999999 77778766 22210 0 110 1
Q ss_pred HHHHHHHHHH---HHHhhhhcCCCChhhHHHHHhhhhhhhhcCCCCC
Q 011721 224 SFEHASLMLT---ELESQSMLQPTDYGEDKRKKILSSCTYINGSEEN 267 (479)
Q Consensus 224 ~~~rA~eaL~---el~~a~~~~P~~~~~~~~~~~~~~~~~i~~~~~~ 267 (479)
.-.++.+++. .+.+++.+-|. +. +..+|+....+-.|..|+
T Consensus 500 n~~es~nmvrpamqlAkKi~Di~v-qL--ws~si~~~L~~a~g~~~~ 543 (629)
T KOG2300|consen 500 NTVESRNMVRPAMQLAKKIPDIPV-QL--WSSSILTDLYQALGEKGN 543 (629)
T ss_pred chHHHHhccchHHHHHhcCCCchH-HH--HHHHHHHHHHHHhCcchh
Confidence 1123334433 33444433332 33 667778777776676555
No 265
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.36 E-value=0.033 Score=61.27 Aligned_cols=103 Identities=20% Similarity=0.129 Sum_probs=67.3
Q ss_pred HHHHHH-HHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhh
Q 011721 58 DMAVVM-KQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQ 136 (479)
Q Consensus 58 ~LA~vL-~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~ 136 (479)
++|.+| ..+|+.-.|++++..++...|......+.+ |+.+..+.|...+|-..+.++|.+...
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~-la~~~~~~~~~~da~~~l~q~l~~~~s--------------- 674 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN-LANLLIHYGLHLDATKLLLQALAINSS--------------- 674 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH-HHHHHHHhhhhccHHHHHHHHHhhccc---------------
Confidence 444444 346777777777777777777654433322 456666777777777777777776311
Q ss_pred chhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 137 GRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 137 g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
.+-.++.+|.+|+.+.+.+.|+++|+.|+.++|+++..-+
T Consensus 675 -----------epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 675 -----------EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred -----------CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHH
Confidence 1125566777777777777777777777777777776554
No 266
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.35 E-value=0.86 Score=50.56 Aligned_cols=153 Identities=21% Similarity=0.100 Sum_probs=102.3
Q ss_pred cHHHHHHHHHH-----HcCCHHHHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHh
Q 011721 20 SPYVRAKRAQL-----VEKDPSRAISLFWAAIN-------AGDRVDSALKDMAVVMKQLD-----RSEEAIEAIKSFRCL 82 (479)
Q Consensus 20 ~pyv~a~~~~L-----~~gd~eeAi~~y~kAL~-------l~p~~~~Al~~LA~vL~~~G-----rydEAie~lekal~l 82 (479)
.+....+.+++ ...|++.|+.+|..+.. .. +..+.+.||.+|.+.. +++.|+.+|.++-..
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 34445555544 23589999999999877 33 3457888999998854 678899999998888
Q ss_pred cCCChHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 83 CADDSQESLDNVLLELYKRSK---RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 83 ~P~da~~~l~~aLg~lY~klG---r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
...++... ++.+|..-. ++..|..+|..|... -...+.+++|.+|
T Consensus 323 g~~~a~~~----lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------------------------G~~~A~~~la~~y 370 (552)
T KOG1550|consen 323 GNPDAQYL----LGVLYETGTKERDYRRAFEYYSLAAKA----------------------------GHILAIYRLALCY 370 (552)
T ss_pred CCchHHHH----HHHHHHcCCccccHHHHHHHHHHHHHc----------------------------CChHHHHHHHHHH
Confidence 76665433 445555444 456777777776654 1223677777766
Q ss_pred HH----cCCHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHc-CCHHHHHH-HHHHH
Q 011721 160 LQ----QNDYESAERYYMKALSLESDKNKQC-NLAICLIRL-NRIAEAKS-LLQAV 208 (479)
Q Consensus 160 ~~----lGdydeA~~~yrKALeLdPdna~a~-nLG~~L~~l-Gr~dEAi~-l~kAL 208 (479)
.. .-+...|..+|.+|.+.+ ++.+. .++.++..- ++++.+.. +....
T Consensus 371 ~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 371 ELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 53 358999999999999999 44333 244444332 77777776 44433
No 267
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.33 E-value=2.5 Score=43.56 Aligned_cols=117 Identities=10% Similarity=0.032 Sum_probs=80.0
Q ss_pred hHHHHHHHhhCCCCCcHHHHHHHHHHHc---C---------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHH
Q 011721 5 DEELFHVIHKVPAGDSPYVRAKRAQLVE---K---------DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEA 72 (479)
Q Consensus 5 ~~~~~~~v~k~p~~~~pyv~a~~~~L~~---g---------d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEA 72 (479)
..++...+...|++....+.....+-.. + -.+.-+..|++||+.+|+....+..+-.+..+....++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566777888998877666554333211 1 135667899999999998887777666677788888888
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhchh
Q 011721 73 IEAIKSFRCLCADDSQESLDNVLLEL-YKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 73 ie~lekal~l~P~da~~~l~~aLg~l-Y~klGr~deAie~lekALkl~p~ 121 (479)
.+.+++++..+|++...+..+.-... -...-.+++....|.++|.....
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 89999999999987655433321111 12234578888888888876433
No 268
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.95 E-value=0.061 Score=55.43 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 154 NLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 154 nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+.+.-....|+.++|...|+.|++++|++++++. +|...-..++.-+|-. |.+||.++|.|.++
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3444557889999999999999999999999988 9999988899999999 99999999998774
No 269
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.75 E-value=0.62 Score=49.06 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=98.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------------cCC-----------
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--------------CAD----------- 85 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--------------~P~----------- 85 (479)
...|++.-+.+ |...|-+.+++..++.++..+|++..|.+.+++++-. ++.
T Consensus 22 ~~~Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~ 97 (360)
T PF04910_consen 22 QSHDPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRP 97 (360)
T ss_pred HccCHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccc
Confidence 44566654443 4678999999999999999999999999999887532 111
Q ss_pred -ChHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHH-HHHHHHHHHHHHc
Q 011721 86 -DSQESLD-NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS-RISGNLAWAYLQQ 162 (479)
Q Consensus 86 -da~~~l~-~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~-~al~nLG~ay~~l 162 (479)
|....+. ...+....+.|-+.-|.+..+-.+.++|.. |+ .+++.+-....+.
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~-------------------------DP~g~ll~ID~~ALrs 152 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE-------------------------DPLGVLLFIDYYALRS 152 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-------------------------CcchhHHHHHHHHHhc
Confidence 1111110 001255667888888888888777776651 11 2445555555666
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----H-HHHHHHHHHHHcCCH---------------HHHHH-HHHHHHhcCC
Q 011721 163 NDYESAERYYMKALSLESDK-----N-KQCNLAICLIRLNRI---------------AEAKS-LLQAVRASSR 213 (479)
Q Consensus 163 GdydeA~~~yrKALeLdPdn-----a-~a~nLG~~L~~lGr~---------------dEAi~-l~kAL~l~P~ 213 (479)
++|+=-+..++........+ | -++.++.++..+++- ++|.. +.+|+...|.
T Consensus 153 ~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 153 RQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred CCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 77776666666655421111 1 234467777777776 77877 7778887774
No 270
>PRK10941 hypothetical protein; Provisional
Probab=94.68 E-value=0.33 Score=49.17 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
.+.+++.+++++.|+......+..+|+++.-+...|.+|.+.|.+..|+.-|+..++.+|+++.+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34556777788888888888888888777777778888888888888888888888888877654
No 271
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.18 Score=52.54 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=74.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc
Q 011721 27 RAQLVEKDPSRAISLFWAAINA---GDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l---~p~~~-~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~kl 102 (479)
.-++..++|..|+..|.+.|+. +|+.. ..|.|.|.+....|+|-.|+.-+.+++.++|.+.-+.+.- +.++..+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~--Akc~~eL 166 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG--AKCLLEL 166 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh--hHHHHHH
Confidence 4456778899999999999983 44433 4467899999999999999999999999999987665543 3678888
Q ss_pred CCHHHHHHHHHHHHHhchh
Q 011721 103 KRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~ 121 (479)
.++++|....+..+.++.+
T Consensus 167 e~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHhhhhhhhHH
Confidence 9999999999988887543
No 272
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.62 E-value=0.06 Score=33.23 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
++..+|.++...|++++|+..|++++.++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5667777777777777777777777776664
No 273
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.50 E-value=2.5 Score=48.98 Aligned_cols=204 Identities=13% Similarity=-0.005 Sum_probs=119.4
Q ss_pred cchHHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH-c-CCC-------cHHHHHHHHHHHHHCCChHHHH
Q 011721 3 WKDEELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAIN-A-GDR-------VDSALKDMAVVMKQLDRSEEAI 73 (479)
Q Consensus 3 ~~~~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~-l-~p~-------~~~Al~~LA~vL~~~GrydEAi 73 (479)
|.+.....++.+.|.- .+.-......+.++++|..+..++-. + .|+ .....-..|.+....|++++|+
T Consensus 402 ~~~~lP~~~l~~~P~L---vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~ 478 (894)
T COG2909 402 WLKALPAELLASTPRL---VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAE 478 (894)
T ss_pred HHHhCCHHHHhhCchH---HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4444455555555531 12223456678899999888877654 1 211 2233344688899999999999
Q ss_pred HHHHHHHHhcCCChH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC------CCchHHHHhhc-------
Q 011721 74 EAIKSFRCLCADDSQ---ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG------GKSTKIARSQG------- 137 (479)
Q Consensus 74 e~lekal~l~P~da~---~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~------~k~~~~A~~~g------- 137 (479)
+..+.++..-|.+.. ......++.+..-.|++++|..+...+.++........ .........+|
T Consensus 479 ~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~ 558 (894)
T COG2909 479 DLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ 558 (894)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999988887643 23334466888899999999999999998854321100 00000111122
Q ss_pred hhHHHhh-------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----C--HHH--HHHHHHHHHcCCHHHHH
Q 011721 138 RKTQITL-------VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD----K--NKQ--CNLAICLIRLNRIAEAK 202 (479)
Q Consensus 138 ~k~~l~L-------~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd----n--a~a--~nLG~~L~~lGr~dEAi 202 (479)
.+....+ .+-....+...+.++...-+++.+....++.+++.-. . ..+ ++|+.++...|++++|.
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~ 638 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL 638 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 1110000 0110112222233333333388888888888887422 2 222 25899999999999999
Q ss_pred H-HHHHHH
Q 011721 203 S-LLQAVR 209 (479)
Q Consensus 203 ~-l~kAL~ 209 (479)
. +.+...
T Consensus 639 ~~l~~~~~ 646 (894)
T COG2909 639 AQLDELER 646 (894)
T ss_pred HHHHHHHH
Confidence 9 554433
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.47 E-value=0.53 Score=44.57 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
..++..+|..|.+.|++++|++.|.++...+-.... ..+.+.++.+....|++.....++.+|-.+...+... .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~----~- 110 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW----E- 110 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH----H-
Confidence 467889999999999999999999998887654322 2223334577888999999999999888774331110 0
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
-...+-..-|..++..++|.+|-..|-.++.-..
T Consensus 111 ---------------~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 111 ---------------RRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred ---------------HHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 0012334557778888999999998887765443
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.46 E-value=2.1 Score=40.25 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQAVRASS 212 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P 212 (479)
|+.+++-..-|+++...|++.+|+..|+.+.+-.|..+.+-- |+.||..+|+.+==....+++...+
T Consensus 41 P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 41 PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRYADEVLESGA 108 (160)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhcCC
Confidence 344445667788899999999999999999888888887766 8999988887532222334444443
No 276
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.23 E-value=0.32 Score=52.97 Aligned_cols=83 Identities=22% Similarity=0.230 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---------cCCCC----------HHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALS---------LESDK----------NKQCNLAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALe---------LdPdn----------a~a~nLG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
+++|||.|++++|.|..+..+|.+||. +.|.. ...||+|..|+..|+.-+|.+ +.+++..
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 569999999999999999999999996 12211 234779999999999999999 8899988
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHHhhh
Q 011721 211 SSRNEKMDESYAKSFEHASLMLTELESQS 239 (479)
Q Consensus 211 ~P~n~~a~~~~~k~~~rA~eaL~el~~a~ 239 (479)
...|+. -.+.-|+-.+...++.+
T Consensus 365 fh~nPr------lWLRlAEcCima~~~~l 387 (696)
T KOG2471|consen 365 FHRNPR------LWLRLAECCIMALQKGL 387 (696)
T ss_pred HhcCcH------HHHHHHHHHHHHhhhhh
Confidence 777765 23445555555555543
No 277
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.19 E-value=2.3 Score=44.89 Aligned_cols=155 Identities=20% Similarity=0.104 Sum_probs=110.0
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH---------c-----CCC---------------cHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAIN---------A-----GDR---------------VDSAL 56 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~---------l-----~p~---------------~~~Al 56 (479)
..+.+++++.|=....++....+...+||.+.|..+.++||- - +.. .--++
T Consensus 27 ~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 27 NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence 456677889998888999998999999999999998888863 1 111 11345
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH-HhcCCCchHHHH
Q 011721 57 KDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV-IACGGKSTKIAR 134 (479)
Q Consensus 57 ~~LA~vL~~~GrydEAie~lekal~l~P~-da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~-la~~~k~~~~A~ 134 (479)
+.....+.+.|-+..|.+..+-++.++|. |+-..+. .+-..-.+.++|+-=+..++......... ..
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll-~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~---------- 175 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL-FIDYYALRSRQYQWLIDFSESPLAKCYRNWLS---------- 175 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH-HHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh----------
Confidence 56777889999999999999999999999 6643221 22233446677776666666544321110 00
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHcCCCCH
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDY---------------ESAERYYMKALSLESDKN 183 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy---------------deA~~~yrKALeLdPdna 183 (479)
. -+..-+.++.++..+++- ++|...+++|+..-|.-.
T Consensus 176 ---------~---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 176 ---------L---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred ---------h---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 0 112557888889999888 999999999999888543
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.05 E-value=1.7 Score=43.81 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGD----RVDSALKDMAVVMKQLDRSEEAIEAIKSFRC 81 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p----~~~~Al~~LA~vL~~~GrydEAie~lekal~ 81 (479)
.++....+....|.++.|...+.++...++ ..+...+..+.++...|+..+|+..++..+.
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555667788999999999999887542 1345677789999999999999999988777
No 279
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.03 E-value=4.7 Score=40.08 Aligned_cols=149 Identities=16% Similarity=0.104 Sum_probs=100.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC----CChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH----c
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR----S 102 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~----GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k----l 102 (479)
..+++..|...+.++-...+ ..+...++.+|... .+..+|+..|+.+... .++...+ .|+.+|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~--~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--g~~~a~~--~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD--AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--GLAEALF--NLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC--hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--ccHHHHH--hHHHHHhcCCCcc
Confidence 45688899999988776433 35777888888653 4578899999854433 3333332 24555554 3
Q ss_pred CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHH
Q 011721 103 KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ-----N--DYESAERYYMKA 175 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l-----G--dydeA~~~yrKA 175 (479)
.++.+|...|++|........ ..+.++||.+|..- - +...|+..|++|
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a-------------------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEA-------------------------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhH-------------------------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 488999999998887621100 12356677766653 1 334899999999
Q ss_pred HHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcC
Q 011721 176 LSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P 212 (479)
-... ++.+.. ||.+|.. ..++.+|.. +.+|.....
T Consensus 182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9988 666665 9988865 348999999 888877664
No 280
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.93 E-value=0.13 Score=35.47 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCL 82 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l 82 (479)
.++.+||.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45667777777777777777777766554
No 281
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.86 E-value=1.2 Score=40.24 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=63.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCC--------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-------CCCh
Q 011721 27 RAQLVEKDPSRAISLFWAAINA----GDR--------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-------ADDS 87 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l----~p~--------~~~Al~~LA~vL~~~GrydEAie~lekal~l~-------P~da 87 (479)
.-++..+-|++|...+++|+.. .+. +.-.+..|+..+..+|+|++++..-..++... .+..
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 4568889999999999999973 221 22345679999999999999998877776543 3322
Q ss_pred HHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 88 QESLD--NVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 88 ~~~l~--~aLg~lY~klGr~deAie~lekALkl 118 (479)
..++. ..-+..+..+|+.++|+..|+.+-++
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 21111 11235678899999999999999887
No 282
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.59 E-value=1.9 Score=47.90 Aligned_cols=141 Identities=20% Similarity=0.127 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-----CChHHHHHHHHHHHH-------hcCCChHHHHHHHHHHHHHHc
Q 011721 35 PSRAISLFWAAINAGDRVDSALKDMAVVMKQL-----DRSEEAIEAIKSFRC-------LCADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~-----GrydEAie~lekal~-------l~P~da~~~l~~aLg~lY~kl 102 (479)
...|..+|+.+.+.+ +..+...+|.+|..- .+.+.|+.+|+.+.. .. ++. ..+.++.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~--a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPP--AQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCc--cccHHHHHHhcC
Confidence 567899998887765 356777888887554 789999999988765 21 111 123466777764
Q ss_pred C-----CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 011721 103 K-----RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN---DYESAERYYMK 174 (479)
Q Consensus 103 G-----r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG---dydeA~~~yrK 174 (479)
. ++..|+.+|.++-.. .++.+.+.||.+|..-. ++..|..+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~----------------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAEL----------------------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred CCCccccHHHHHHHHHHHHhc----------------------------CCchHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 3 567788888777665 23357889999888665 67899999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHc----CCHHHHHH-HHHHHHhc
Q 011721 175 ALSLESDKNKQCN-LAICLIRL----NRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~l----Gr~dEAi~-l~kAL~l~ 211 (479)
|.... +..++. ||.||..- -+...|.. +.++....
T Consensus 354 Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 354 AAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 97653 455555 88887642 47899999 77887776
No 283
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.40 E-value=9.5 Score=39.29 Aligned_cols=212 Identities=19% Similarity=0.230 Sum_probs=119.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHH
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRCL-----CADDSQESLDNVLLELY 99 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~----~Al~~LA~vL~~~GrydEAie~lekal~l-----~P~da~~~l~~aLg~lY 99 (479)
.+.+.++++|+.-|.+++.+.+.-. .|+..+-.+...+|+|++-.+.|.+++.. .-+..+-.++..| +.-
T Consensus 37 ~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~Il-Dyi 115 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSIL-DYI 115 (440)
T ss_pred cccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHH
Confidence 3566799999999999999766532 46778889999999999999999887643 1222233333322 111
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHH--hcC-CCchHHHHh-----hchhHH-------Hhh-----------hhhHHHHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVI--ACG-GKSTKIARS-----QGRKTQ-------ITL-----------VQELSRISG 153 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~l--a~~-~k~~~~A~~-----~g~k~~-------l~L-----------~pe~~~al~ 153 (479)
....+.+--.+.|+-.|..-.++- .++ ....+.... .+.+.. .+. +..-.++|-
T Consensus 116 StS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 116 STSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 122223333334444433321110 000 000000000 000000 000 011124555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH------H-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH-HHHHH
Q 011721 154 NLAWAYLQQNDYESAERYYMKALSLESDKNKQC------N-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE-SYAKS 224 (479)
Q Consensus 154 nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~------n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~-~~~k~ 224 (479)
.--.+|..+++...-...|++||.+...-|-.+ . =|..++..|+|++|.. +++|+...-+.+.... ..++.
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKY 275 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKY 275 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHH
Confidence 556788899999999999999999875544222 2 3556788899999999 9999986544333111 22333
Q ss_pred HHHHHHHHHHHHhhhhcCCCCh
Q 011721 225 FEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 225 ~~rA~eaL~el~~a~~~~P~~~ 246 (479)
+ .|+.+..+...+|-|.
T Consensus 276 L-----VLANMLmkS~iNPFDs 292 (440)
T KOG1464|consen 276 L-----VLANMLMKSGINPFDS 292 (440)
T ss_pred H-----HHHHHHHHcCCCCCcc
Confidence 2 4455555666677554
No 284
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.33 E-value=2.4 Score=46.03 Aligned_cols=128 Identities=17% Similarity=0.165 Sum_probs=78.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~~-~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
.+..+..+|++.+....+.. .+-|.. ..-...++..|.++|-.+.|+..-+ |+...+ ++..++|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF-----eLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRF-----ELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHH-----HHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHh-----HHHHhcCC
Confidence 35677889999977666421 111222 2235667888999999999988653 333333 34567888
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
++.|.+..+ ..+++..|..||.+.+.+|+++-|+++|+++- +
T Consensus 334 L~~A~~~a~-------------------------------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-------d 375 (443)
T PF04053_consen 334 LDIALEIAK-------------------------------ELDDPEKWKQLGDEALRQGNIELAEECYQKAK-------D 375 (443)
T ss_dssp HHHHHHHCC-------------------------------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------
T ss_pred HHHHHHHHH-------------------------------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------C
Confidence 888776532 12234589999999999999999999999973 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 011721 185 QCNLAICLIRLNRIAEAKSLL 205 (479)
Q Consensus 185 a~nLG~~L~~lGr~dEAi~l~ 205 (479)
.-.|..+|.-.|+.+.=..+.
T Consensus 376 ~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 376 FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHH
T ss_pred ccccHHHHHHhCCHHHHHHHH
Confidence 222778888888864433333
No 285
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.22 E-value=1.2 Score=50.74 Aligned_cols=183 Identities=17% Similarity=0.098 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHc----CCCcH-HHHHHHHHHHHHCCChHHHHHHHHHH------HHhc
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWA------AINA----GDRVD-SALKDMAVVMKQLDRSEEAIEAIKSF------RCLC 83 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~k------AL~l----~p~~~-~Al~~LA~vL~~~GrydEAie~leka------l~l~ 83 (479)
-|-+++.++-.-.|+++|+++|++ ||++ .|... ..-...|.-+.+.|+++.|+..|-.+ ++..
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 455677777778899999998875 3432 22111 11124577788999999998876432 1110
Q ss_pred ------CC-----------ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH--HHHhhchhHHHhh
Q 011721 84 ------AD-----------DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK--IARSQGRKTQITL 144 (479)
Q Consensus 84 ------P~-----------da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~--~A~~~g~k~~l~L 144 (479)
|. .....++-.+++-|...|+|+-|.+.|.++-.... .+..+++... .|..+.. .-.
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~d-ai~my~k~~kw~da~kla~---e~~ 818 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKD-AIDMYGKAGKWEDAFKLAE---ECH 818 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHH-HHHHHhccccHHHHHHHHH---Hhc
Confidence 10 00011111234667788888888887776543321 1111111110 1111000 011
Q ss_pred hhhHH-HHHHHHHHHHHHcCCHHHHHHHHH------HHHH-----------------cCCCCH-HHHH-HHHHHHHcCCH
Q 011721 145 VQELS-RISGNLAWAYLQQNDYESAERYYM------KALS-----------------LESDKN-KQCN-LAICLIRLNRI 198 (479)
Q Consensus 145 ~pe~~-~al~nLG~ay~~lGdydeA~~~yr------KALe-----------------LdPdna-~a~n-LG~~L~~lGr~ 198 (479)
.|+.. ..|..-+.-+...|+|.+|++.|- +|+. -.|++- +... +|.-|-..|++
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccCh
Confidence 22222 223333444555555555554442 2221 134443 3344 88888889999
Q ss_pred HHHHH-HHHH
Q 011721 199 AEAKS-LLQA 207 (479)
Q Consensus 199 dEAi~-l~kA 207 (479)
.+|.. +++|
T Consensus 899 kaae~~flea 908 (1636)
T KOG3616|consen 899 KAAEEHFLEA 908 (1636)
T ss_pred hHHHHHHHhh
Confidence 99888 7765
No 286
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.05 E-value=0.36 Score=40.68 Aligned_cols=69 Identities=20% Similarity=0.160 Sum_probs=48.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
..+.|+|.+|++.+.+.+........... ......++.++|.++...|++++|+..+++|+.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~-----------------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS-----------------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh-----------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34678888888888888876333211000 0012247788999999999999999999999998
Q ss_pred CCCCHH
Q 011721 179 ESDKNK 184 (479)
Q Consensus 179 dPdna~ 184 (479)
.....+
T Consensus 71 Are~~D 76 (94)
T PF12862_consen 71 ARENGD 76 (94)
T ss_pred HHHHCC
Confidence 665543
No 287
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.98 E-value=6.2 Score=43.01 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=49.8
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 011721 150 RISGNL--AWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQAVR 209 (479)
Q Consensus 150 ~al~nL--G~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~ 209 (479)
+.-+-| |..++.+|+|.++.-+-.-..+++| .+.++- ||.|++...+|+||..++..+-
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 344555 4457799999999999999999999 777777 9999999999999999877654
No 288
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.84 E-value=0.5 Score=36.32 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
+.++.+|..+.+.|+|++|..+++.+++.+|++.++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 357889999999999999999999999999998764
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.67 E-value=4.5 Score=40.66 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=63.9
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN-DYESAERYYMKALSL 178 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG-dydeA~~~yrKALeL 178 (479)
.++|+++.|..+|.|+-.+.+. ..+ .. ...-.+.+++.|.-++..+ +|++|...+++|+++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~---~~~---~~------------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNS---LDP---DM------------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhc---CCc---HH------------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3679999999999988776421 000 00 0112358899999999999 999999999999998
Q ss_pred ----CC---CCH-------HHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 011721 179 ----ES---DKN-------KQCN-LAICLIRLNRIAEAKSLLQAVR 209 (479)
Q Consensus 179 ----dP---dna-------~a~n-LG~~L~~lGr~dEAi~l~kAL~ 209 (479)
.+ ..+ ..+. |+.+|+..+.++-...+.+++.
T Consensus 66 l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 66 LEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 22 111 1234 8999999988765555555443
No 290
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.36 E-value=0.45 Score=46.73 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHH
Q 011721 168 AERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEH 227 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~r 227 (479)
|+.+|.+|+.+.|+++..|| ||.+....|+.=+|+. |.+++........+.+.....|++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999 9999999999999999 889885443333333333344444
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.17 E-value=9.4 Score=36.94 Aligned_cols=148 Identities=11% Similarity=0.114 Sum_probs=92.2
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchh
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRK 139 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k 139 (479)
+.-+.+.+..++|+..|..+-+-.-..-.....+-.+.+....|+...|+..|.++-+-.+-.... .+
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~----rd-------- 132 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG----RD-------- 132 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh----hH--------
Confidence 444667788888888887765544332111112224567788899999999998776543211100 00
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 011721 140 TQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKSLLQAVRASSRNE 215 (479)
Q Consensus 140 ~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P~n~ 215 (479)
-+...-+.++...|.|++-....+-. .- +.++ .+.. ||.+-.+.|+|.+|...+.-|..+-..+
T Consensus 133 ----------~ARlraa~lLvD~gsy~dV~srvepL-a~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 133 ----------LARLRAAYLLVDNGSYDDVSSRVEPL-AG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred ----------HHHHHHHHHHhccccHHHHHHHhhhc-cC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 14456678889999999876654432 22 2233 3455 9999999999999999555554443322
Q ss_pred cchHHHHHHHHHHHHHHHHHHh
Q 011721 216 KMDESYAKSFEHASLMLTELES 237 (479)
Q Consensus 216 ~a~~~~~k~~~rA~eaL~el~~ 237 (479)
. ....||+-+|.-|..
T Consensus 201 r------nirqRAq~mldlI~s 216 (221)
T COG4649 201 R------NIRQRAQIMLDLIDS 216 (221)
T ss_pred H------HHHHHHHHHHHHHhc
Confidence 2 234778777776654
No 292
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=2.6 Score=46.87 Aligned_cols=28 Identities=14% Similarity=-0.046 Sum_probs=15.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 156 AWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 156 G~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
|..+..+|+..+|....++++++.|.++
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 5555555555555555555555555554
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.13 E-value=1.8 Score=40.97 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..+++.|.+.|++++|++.|.++....... ....+.++++-.+....|++.....+.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~-----------------------~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSP-----------------------GHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCH-----------------------HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 346789999999999999999977642110 012247788888889999999999999
Q ss_pred HHHHHcCCC--CHHHH---H--HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 173 MKALSLESD--KNKQC---N--LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 173 rKALeLdPd--na~a~---n--LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
.+|-.+-.. +.... . -|..++..++|.+|.. +..++....
T Consensus 97 ~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 97 EKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 999887433 33322 2 6888899999999999 877765443
No 294
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.76 E-value=9.7 Score=39.26 Aligned_cols=147 Identities=14% Similarity=0.013 Sum_probs=90.8
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCC------------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHH
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDR------------SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEE 107 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr------------ydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~de 107 (479)
..|.+.+..+|.+.+++..+....-..-. .+.-+.+|++|++.+|++.... ..+..++.+....++
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~--l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLL--LGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhCCHHH
Confidence 46778889999999998887766444322 4556678999999999875443 334467778888888
Q ss_pred HHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------C-
Q 011721 108 EIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-------E- 179 (479)
Q Consensus 108 Aie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-------d- 179 (479)
....+++++..+|....+.-.. +-+.++ -...-.++.....|.++|.. .
T Consensus 84 l~~~we~~l~~~~~~~~LW~~y---------------------L~~~q~--~~~~f~v~~~~~~y~~~l~~L~~~~~~~~ 140 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREY---------------------LDFRQS--NFASFTVSDVRDVYEKCLRALSRRRSGRM 140 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHH---------------------HHHHHH--HhccCcHHHHHHHHHHHHHHHHHhhcccc
Confidence 8889999998876543211000 001111 01122345555555555543 1
Q ss_pred ---CC--C-H----HHHH-HHHHHHHcCCHHHHHHHHHH-HHhc
Q 011721 180 ---SD--K-N----KQCN-LAICLIRLNRIAEAKSLLQA-VRAS 211 (479)
Q Consensus 180 ---Pd--n-a----~a~n-LG~~L~~lGr~dEAi~l~kA-L~l~ 211 (479)
++ . . ..+. +...+.+.|-.+.|+.+.+| ++++
T Consensus 141 ~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 141 TSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 00 1 1 1223 77788889999999996665 5554
No 295
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.74 E-value=15 Score=41.25 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHH---cCCC-cHHHHHHHHHHHH-HCCChHHHHHHHHHHHHhcCCC--hH--HHHHHHHHHHHHHcCCH
Q 011721 35 PSRAISLFWAAIN---AGDR-VDSALKDMAVVMK-QLDRSEEAIEAIKSFRCLCADD--SQ--ESLDNVLLELYKRSKRI 105 (479)
Q Consensus 35 ~eeAi~~y~kAL~---l~p~-~~~Al~~LA~vL~-~~GrydEAie~lekal~l~P~d--a~--~~l~~aLg~lY~klGr~ 105 (479)
...|+.+++.+++ +.|. ...+++.+|.+|. ...++++|+.++++++.+...+ .+ ......++.+|.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 3456777777663 2222 2356788998887 7999999999999998887543 22 22234467889999888
Q ss_pred HHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHH-HHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC--CC
Q 011721 106 EEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS-RISGNL-AWAYLQQNDYESAERYYMKALSLE--SD 181 (479)
Q Consensus 106 deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~-~al~nL-G~ay~~lGdydeA~~~yrKALeLd--Pd 181 (479)
. |+..++++++....... ... .++-.+ ...+...+++..|++.++....+. .+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~----------------------~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~ 173 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGH----------------------SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG 173 (608)
T ss_pred H-HHHHHHHHHHHHhccCc----------------------hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC
Confidence 8 99999999987433100 000 111112 223333389999999999999987 45
Q ss_pred CHHHH----H-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 182 KNKQC----N-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 182 na~a~----n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
++..+ . .|.++...+..++++. +.+++
T Consensus 174 d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 174 DPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 55332 1 4667777788888888 66553
No 296
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.32 E-value=0.27 Score=49.01 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 158 AYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 158 ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
...+.++.+.|.+.|.+|+++.|+....+. +|....+.|+++.|.. +.+.++++|++.-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 456789999999999999999999998888 9999999999999999 9999999998743
No 297
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.15 E-value=0.59 Score=33.06 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERY--YMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~--yrKALeLdPdn 182 (479)
+.++.+|..+.++|+|++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3678889999999999999999 66888888764
No 298
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.14 E-value=0.58 Score=48.50 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHH
Q 011721 30 LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLD 92 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~ 92 (479)
..+|+.++|..+|.-|++++|++++++..+|.+.....+.-+|-.+|-+++.+.|.+..+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 467889999999999999999999999999999988899999999999999999988765443
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.10 E-value=1.6 Score=36.76 Aligned_cols=74 Identities=24% Similarity=0.237 Sum_probs=52.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCH---------HH-HHHHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHH
Q 011721 159 YLQQNDYESAERYYMKALSLESDKN---------KQ-CNLAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEH 227 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna---------~a-~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~r 227 (479)
..+.|+|.+|++.+.+.+....... .+ .++|.++...|++++|+. +.+|+.+...+.. ...+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D-----~~~l~~ 82 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD-----RRCLAY 82 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC-----HHHHHH
Confidence 4688999999999999988744332 22 338999999999999999 9999988765433 123344
Q ss_pred HHHHHHHHHh
Q 011721 228 ASLMLTELES 237 (479)
Q Consensus 228 A~eaL~el~~ 237 (479)
+...+..+.+
T Consensus 83 al~~~~~l~~ 92 (94)
T PF12862_consen 83 ALSWLANLLK 92 (94)
T ss_pred HHHHHHHHhh
Confidence 5555555443
No 300
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.03 E-value=5.6 Score=44.40 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCcHHHHHH--HHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 38 AISLFWAAINAGDRVDSALKD--MAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 38 Ai~~y~kAL~l~p~~~~Al~~--LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
|+..+...+..+|.++..+.. +...+...++...|...+..++..+|.+...
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 103 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPA 103 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchH
Confidence 444444444455544433221 4555566666666666666666666665543
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.95 E-value=2.7 Score=39.25 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
|+.+++-..-|+++...|++++|+..|+...+-.+..+...- ++.|+..+|+.
T Consensus 41 P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 41 PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 333445566788888888888888888888888877776655 78888888764
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.67 E-value=3.3 Score=39.03 Aligned_cols=83 Identities=10% Similarity=-0.109 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
..+....+.+..++.+.+..++...-.+.|+....-..-|.++...|++.+|+.+|+.+....|..+..... ++.|+.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL--lA~CL~ 89 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL--LALCLY 89 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH--HHHHHH
Confidence 344455666777888888888876666888888888888899999999999999998887777776543221 234555
Q ss_pred HcCCH
Q 011721 101 RSKRI 105 (479)
Q Consensus 101 klGr~ 105 (479)
.+|+.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 55553
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.62 E-value=20 Score=35.99 Aligned_cols=62 Identities=27% Similarity=0.261 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHH---HHHHHHHcCCCCHHHHHHHH-HHHHcCCHHHHHH-HHHHHHhc
Q 011721 150 RISGNLAWAYLQQNDYESAER---YYMKALSLESDKNKQCNLAI-CLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~---~yrKALeLdPdna~a~nLG~-~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.++..|+.+|+..+.++...+ +.+-+-.--|+.+..+.|.. ++...++.+++.. +.+.+..-
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 378889999999888765444 44445445677776664333 2233688888888 77776543
No 304
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.60 E-value=7.5 Score=46.09 Aligned_cols=150 Identities=18% Similarity=0.164 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELL 112 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~l 112 (479)
+..++|.++..+. +.+..+..+|.+..+.|...+||+.|-++ +|+..++ -..++-.+.|.|++-+.++
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~--eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYL--EVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHH--HHHHHHHhcCcHHHHHHHH
Confidence 5677777666553 23456778888888888888888877543 2222222 1235667788888888777
Q ss_pred HHHHHhchhHHhcCCCchH--HHHh----hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 011721 113 KRKLKKTEEVIACGGKSTK--IARS----QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186 (479)
Q Consensus 113 ekALkl~p~~la~~~k~~~--~A~~----~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~ 186 (479)
.-|-+...+.- .... .|.. .........+|+.+ -....|.-++..|.|+.|.-+|--+ ..+
T Consensus 1157 ~MaRkk~~E~~----id~eLi~AyAkt~rl~elE~fi~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~ 1223 (1666)
T KOG0985|consen 1157 LMARKKVREPY----IDSELIFAYAKTNRLTELEEFIAGPNVA-NIQQVGDRCFEEKMYEAAKLLYSNV--------SNF 1223 (1666)
T ss_pred HHHHHhhcCcc----chHHHHHHHHHhchHHHHHHHhcCCCch-hHHHHhHHHhhhhhhHHHHHHHHHh--------hhH
Confidence 76654321100 0000 0000 00111122334333 2244566666666666666665432 223
Q ss_pred H-HHHHHHHcCCHHHHHH-HHHH
Q 011721 187 N-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 187 n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
. |+..+..+|+|..|.. ..+|
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 3 6666666666666665 4443
No 305
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.59 E-value=32 Score=38.28 Aligned_cols=170 Identities=14% Similarity=0.112 Sum_probs=106.3
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
-++.+.+..+.+ ..+|+.++.+|.+. ..++=-...+++++.+=++. ....-|+..|.+ ++-..+..+|.+|+...
T Consensus 87 h~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDv--v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 87 HLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV--VIGRELADKYEK-IKKSKAAEFFGKALYRF 161 (711)
T ss_pred HHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH--HHHHHHHHHHHH-hchhhHHHHHHHHHHHh
Confidence 355666666554 45788999999988 66777778888888887754 344556677776 99999999999999752
Q ss_pred -hh------------HHhcCCCchHHHHhhchhHHHhhhhhHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 120 -EE------------VIACGGKSTKIARSQGRKTQITLVQELSRISGN-LAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 120 -p~------------~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~n-LG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
|. ...+.+...+.......+.+-.+......+++. +-.-|....++++|++.+...|+.+..+..+
T Consensus 162 I~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 162 IPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred cchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhH
Confidence 21 011111111111111111111111111122222 2234567789999999999999999998766
Q ss_pred HH-HHHHHHH--------------------cCCHHHHHH-HHHHHHhcCCC
Q 011721 186 CN-LAICLIR--------------------LNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 186 ~n-LG~~L~~--------------------lGr~dEAi~-l~kAL~l~P~n 214 (479)
.. +-.-+.. -.+|-+|+. +.+-+-.+..|
T Consensus 242 r~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 242 RKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 54 5444444 346788888 77777777665
No 306
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.07 E-value=2.8 Score=50.28 Aligned_cols=165 Identities=18% Similarity=0.111 Sum_probs=109.6
Q ss_pred HHHHHHHHcCCHHHHHH------HHHHHHH-cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-------hcCC-ChH
Q 011721 24 RAKRAQLVEKDPSRAIS------LFWAAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC-------LCAD-DSQ 88 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~------~y~kAL~-l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~-------l~P~-da~ 88 (479)
..++..+.++.+.+|.. ++..... +.|.....|..|+.++...|++++|+..-.++.- +++. ...
T Consensus 937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Confidence 34556677777777766 5553332 5677788899999999999999999997666432 3322 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHH
Q 011721 89 ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESA 168 (479)
Q Consensus 89 ~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA 168 (479)
...+ ++......+....|...+.+++.+.-- .+. ...|..+-...+++.++...++++.|
T Consensus 1017 ~y~n--lal~~f~~~~~~~al~~~~ra~~l~~L--s~g----------------e~hP~~a~~~~nle~l~~~v~e~d~a 1076 (1236)
T KOG1839|consen 1017 AYGN--LALYEFAVKNLSGALKSLNRALKLKLL--SSG----------------EDHPPTALSFINLELLLLGVEEADTA 1076 (1236)
T ss_pred HhhH--HHHHHHhccCccchhhhHHHHHHhhcc--ccC----------------CCCCchhhhhhHHHHHHhhHHHHHHH
Confidence 2222 334455666777888888887776210 000 12344445668999999999999999
Q ss_pred HHHHHHHHHcC-----CCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 169 ERYYMKALSLE-----SDKN---KQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 169 ~~~yrKALeLd-----Pdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
+.+.+.|+++. |... ..+. ++..+..++++..|.. ...+.
T Consensus 1077 l~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1077 LRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred HHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 99999999964 3322 2344 7777777888877777 44333
No 307
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=7.3 Score=41.90 Aligned_cols=192 Identities=18% Similarity=0.161 Sum_probs=114.6
Q ss_pred HcCCHHHHHHHHHHHHHc---CC-C-----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----cCCChHHHHHHHHHH
Q 011721 31 VEKDPSRAISLFWAAINA---GD-R-----VDSALKDMAVVMKQLDRSEEAIEAIKSFRCL----CADDSQESLDNVLLE 97 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l---~p-~-----~~~Al~~LA~vL~~~GrydEAie~lekal~l----~P~da~~~l~~aLg~ 97 (479)
.++++.+|...-...+.. .. . ....|+-+..+|...|+...-...+...+.. +....++.+.++|..
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 457888888776665541 11 1 2344667788888899977766666554432 233445666677778
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
.|...+.|+.|.....++. +|+.. .+.+-+++++.+|.+..-+++|..|.++|-+|+.
T Consensus 218 ~yL~n~lydqa~~lvsK~~--~pe~~--------------------snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSV--YPEAA--------------------SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred HHhhhHHHHHHHHHhhccc--Ccccc--------------------ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 8888888888776655432 12111 0123346889999999999999999999999999
Q ss_pred cCCCCHH-----HHH--HHHHHHHcCCHHHHHHHHHH-HH--hcCCCccchHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 011721 178 LESDKNK-----QCN--LAICLIRLNRIAEAKSLLQA-VR--ASSRNEKMDESYAKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 178 LdPdna~-----a~n--LG~~L~~lGr~dEAi~l~kA-L~--l~P~n~~a~~~~~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
..|++.. ..+ +-.+-.-+|.+.|-.-+.+. ++ +.|-.......-...+++..+.++.+...+..+-+
T Consensus 276 kapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~t 352 (493)
T KOG2581|consen 276 KAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGT 352 (493)
T ss_pred hCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCc
Confidence 9998652 234 23333445766643332221 00 00000000001124556677777777777665543
No 308
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.85 E-value=0.37 Score=31.13 Aligned_cols=23 Identities=39% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yr 173 (479)
++.+||.++..+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 66788888888888888888776
No 309
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=11 Score=38.62 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH-cCC-----HHHHHH-HHHHHHhcCCCcc
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIR-LNR-----IAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~-lGr-----~dEAi~-l~kAL~l~P~n~~ 216 (479)
+--++...-+++..-+.|+.-+.+-...|+.|--|..++| -=.+... .|= .+.=+. ..+.|.+.|+|..
T Consensus 146 NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS 222 (318)
T KOG0530|consen 146 NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES 222 (318)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc
Confidence 3358889999999999999999999999999998887776 2222211 221 233344 5578999999865
No 310
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.80 E-value=2.9 Score=35.01 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH---H-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC---N-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~---n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
-...-|.-++.+.+.++|+...++||+.-++.++.+ - |..+|.+.|+|.+++. ..+-+.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778899999999999999999999987654 2 6778899999999999 5555544
No 311
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.78 E-value=2.3 Score=45.74 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=77.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
..+.++++|..|+.-|.-||++..++.+........+- .+..-...+-..|..+|+.+++.+-|+.+-.+.|
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~--------di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAE--------DISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChh--------hHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 55778999999999999999997776543210000000 0000011345778999999999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
.++|.+..... -|.|+..+.+|.||.. +.-|.
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999886665 8999999999999999 77664
No 312
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.73 E-value=0.6 Score=33.50 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
++|..||.+-+..++|++|+.-|+++|+|.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 367889999999999999999999998863
No 313
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.62 E-value=47 Score=37.33 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=99.6
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcC--CCcHH----HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC---hHH-HHH
Q 011721 24 RAKRAQL-VEKDPSRAISLFWAAINAG--DRVDS----ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD---SQE-SLD 92 (479)
Q Consensus 24 ~a~~~~L-~~gd~eeAi~~y~kAL~l~--p~~~~----Al~~LA~vL~~~GrydEAie~lekal~l~P~d---a~~-~l~ 92 (479)
+.+.+++ .-.+++.|+.++.+++.+. ++..+ +...++.+|.+.+... |+..+.+++...-.. ... .+.
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr 142 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR 142 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence 4445555 3478999999999998754 33332 2345788888888888 999999988775542 111 111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
+.-+.++...+++..|++.++....+...... .. . ..-+....|.+.+..+..+++++..
T Consensus 143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d----~~--~--------------~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 143 LLKIQLALQHKDYNAALENLQSIAQLANQRGD----PA--V--------------FVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC----HH--H--------------HHHHHHHHHHHHhcCCCchhHHHHH
Confidence 21134444458999999999988876321000 00 0 0113455578888899899999999
Q ss_pred HHHHHcCC------CC--H--HHHH--H-HHHHHHcCCHHHHHH
Q 011721 173 MKALSLES------DK--N--KQCN--L-AICLIRLNRIAEAKS 203 (479)
Q Consensus 173 rKALeLdP------dn--a--~a~n--L-G~~L~~lGr~dEAi~ 203 (479)
.+++...- +. + .++. | -.+++..|+++.+..
T Consensus 203 ~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~ 246 (608)
T PF10345_consen 203 QRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQ 246 (608)
T ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98855322 21 1 2332 2 235677788777776
No 314
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=87.86 E-value=5.7 Score=35.24 Aligned_cols=34 Identities=18% Similarity=0.060 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.|..+..++.||.=+-...-|+++..--+++|.+
T Consensus 74 sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3444557788887777777788888888888876
No 315
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.77 E-value=3 Score=46.98 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=69.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
-..+..+|..+++.|...+.-.|.... +...+....+|..+|+.+.+.|.|.++|+.|-+
T Consensus 363 ~~F~~~~Y~~s~~~y~~Sl~~i~~D~~--------------------~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~ 422 (872)
T KOG4814|consen 363 KLFKMEKYVVSIRFYKLSLKDIISDNY--------------------SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE 422 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhh--------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 355677888888888888877655431 223345778999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKSLLQAV 208 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL 208 (479)
.+|.++-.-. +-.+....|.-++|+.+..++
T Consensus 423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred hccccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999986544 555666778889999944443
No 316
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=86.94 E-value=9 Score=43.79 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
|++...+--+|.++...|.-++|.++|-
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 4444445555555555555555555443
No 317
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=86.81 E-value=0.97 Score=45.17 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=52.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
....+|.+.|.++|.+|+.+.|.....+..+|......|+++.|...|++.++++|.+-
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 44578899999999999999999888899999999999999999999999999999863
No 318
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.34 E-value=4.1 Score=37.64 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHH-cCCCCHH-H-HHHHHHHHHcCCHHHHHHH-HHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQND---YESAERYYMKALS-LESDKNK-Q-CNLAICLIRLNRIAEAKSL-LQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGd---ydeA~~~yrKALe-LdPdna~-a-~nLG~~L~~lGr~dEAi~l-~kAL~l~P~n~~ 216 (479)
...++++|++....+ ..+-+.+++..++ -.|.... . |.|+..+.++|+|++|+.| ..-|..+|+|..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 467999999987654 5677889999997 5555543 3 3399999999999999994 455788888744
No 319
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.31 E-value=59 Score=36.54 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=72.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHcCCHH
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL-CADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l-~P~da~~~l~~aLg~lY~klGr~d 106 (479)
..+..|+++...-+|.+++-.=-.+...+...+..+...|+.+-|-..+..+.++ .|..+..++.. +.+-...|+++
T Consensus 306 f~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~--a~f~e~~~n~~ 383 (577)
T KOG1258|consen 306 FEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE--ARFEESNGNFD 383 (577)
T ss_pred hhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH--HHHHHhhccHH
Confidence 3467799999999999988755567778888999999999999999888877665 45544444433 34566789999
Q ss_pred HHHHHHHHHHHhchhHH
Q 011721 107 EEIELLKRKLKKTEEVI 123 (479)
Q Consensus 107 eAie~lekALkl~p~~l 123 (479)
.|..+|++...-.|..+
T Consensus 384 ~A~~~lq~i~~e~pg~v 400 (577)
T KOG1258|consen 384 DAKVILQRIESEYPGLV 400 (577)
T ss_pred HHHHHHHHHHhhCCchh
Confidence 99999999998776543
No 320
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.03 E-value=8.3 Score=45.67 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=72.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc----C---CHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ----N---DYESAE 169 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l----G---dydeA~ 169 (479)
+++.....|+.|+..|++.-.-.|..- +-.++.+.+|..++.+ | .+++|+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRK-----------------------EGYEAQFRLGITLLEKASEQGDPRDFTQAL 539 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcc-----------------------cchHHHHHhhHHHHHHHHhcCChHHHHHHH
Confidence 556666777777777777666655321 1123556666665543 2 355555
Q ss_pred HHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH--------HHHHHHHHHHHHHHHHHhhh
Q 011721 170 RYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE--------SYAKSFEHASLMLTELESQS 239 (479)
Q Consensus 170 ~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~--------~~~k~~~rA~eaL~el~~a~ 239 (479)
..|++.. -.|.-|--|. -|.+|..+|+|+|=++ ++-|++..|+++.+.. .|-..+..-...+.-+.-++
T Consensus 540 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (932)
T PRK13184 540 SEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLAL 618 (932)
T ss_pred HHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555432 2333344444 6677777777777777 6777777777665411 11122333344445555555
Q ss_pred hcCCCChhhHHHHHhhh
Q 011721 240 MLQPTDYGEDKRKKILS 256 (479)
Q Consensus 240 ~~~P~~~~~~~~~~~~~ 256 (479)
...|..-.....+.++.
T Consensus 619 ~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 619 WIAPEKISSREEEKFLE 635 (932)
T ss_pred HhCcccccchHHHHHHH
Confidence 55565443333334433
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.98 E-value=9.7 Score=37.24 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=66.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINA-GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l-~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
++...+...-....||.-. .+...-.-+.|...|.++-.. .=+.+...+.||..|. ..+.++|+..|.+++++.+.
T Consensus 96 ~l~~L~~~tk~S~dP~llY--y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~ 172 (203)
T PF11207_consen 96 ELERLQEETKNSQDPYLLY--YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP 172 (203)
T ss_pred HHHHHHHHHccCCCccHHH--HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC
Confidence 4455555555666777433 345554456677777554331 1134566777887777 67899999999999988654
Q ss_pred C--hHHHHHHHHHHHHHHcCCHHHHH
Q 011721 86 D--SQESLDNVLLELYKRSKRIEEEI 109 (479)
Q Consensus 86 d--a~~~l~~aLg~lY~klGr~deAi 109 (479)
+ ....+...|+.+|.++|+++.|-
T Consensus 173 ~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 173 DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3 33445566789999999998873
No 322
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.93 E-value=2.4 Score=43.12 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=30.1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
++=.+|.+.++++.|..+.++.+.++|+++...-.. |-+|.++|-+.-|++.+...++..|+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDr--GliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDR--GLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCc--HHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 334445555555555555555555555554332222 23455555555555555555555443
No 323
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.89 E-value=66 Score=37.86 Aligned_cols=167 Identities=16% Similarity=0.040 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH---HHHHHHHHHH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ---ESLDNVLLEL 98 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~~-~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~---~~l~~aLg~l 98 (479)
..+..-....|.+.+|+.+.-+| -+|.. .+.+.+.+.-+...++..- +...+..-|.+.- ..+.+..+..
T Consensus 351 ~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvll~aW~ 424 (894)
T COG2909 351 RAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVLLQAWL 424 (894)
T ss_pred HHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHHHHHHH
Confidence 34444456678888888755332 11211 1222333333444444332 2222333332210 0122223456
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.....++++|...+.++....+..... + . ....+...-..|.+....|+.++|+++.+.++..
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~-~-~---------------~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~ 487 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHS-R-Q---------------GDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ 487 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCccc-c-h---------------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 677899999999988887764432100 0 0 0011234455688899999999999999999999
Q ss_pred CCCCHH-----HHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 179 ESDKNK-----QCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 179 dPdna~-----a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
-|.+.. .+. +|.+.+-.|++++|.. ..++.+...
T Consensus 488 L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 488 LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 888742 233 8999999999999999 666766543
No 324
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.69 E-value=0.94 Score=29.22 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHCCChHHHHHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIK 77 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~le 77 (479)
++..+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 55677777777777777777664
No 325
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.18 E-value=11 Score=43.25 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=35.3
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
.....-..++..+++-+...|++++|-++|-.|++++.-+..
T Consensus 989 ~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynit 1030 (1636)
T KOG3616|consen 989 AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT 1030 (1636)
T ss_pred hhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch
Confidence 344445578899999999999999999999999999977753
No 326
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=84.56 E-value=3.3 Score=42.08 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.+.++=.+|...++++.|..+-.+.+.++|+++.... -|.+|.++|-+.-|+. +...+...|+++.
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 56788889999999999999999999999999997776 9999999999999999 8888999998754
No 327
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.47 E-value=9.6 Score=40.98 Aligned_cols=173 Identities=12% Similarity=0.158 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
..++..+|.-|...|+++.|+..|-++...+-...+. .+...+..+-...|+|..-..+..+|... |.. ...
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~------~~~ 222 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST-PDA------NEN 222 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chh------hhh
Confidence 3577889999999999999999999988777653221 11111223444567777777766666554 110 000
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHH-H-HHHHHHcCCHH-H
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL--------ESDKNKQCN-L-AICLIRLNRIA-E 200 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL--------dPdna~a~n-L-G~~L~~lGr~d-E 200 (479)
.+... .+.+.-.-|.+.+.+++|..|.++|-.+.-- .|.+...|. | |.+-+...++. +
T Consensus 223 ~~q~v-----------~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~ 291 (466)
T KOG0686|consen 223 LAQEV-----------PAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLN 291 (466)
T ss_pred HHHhc-----------CcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHH
Confidence 01000 1124455677788888999999999887653 344444443 2 22222222333 3
Q ss_pred HHH---HHHHHHhcCCCccchH-HHHHHHHHHHHHHHHHHhhhhcCC
Q 011721 201 AKS---LLQAVRASSRNEKMDE-SYAKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 201 Ai~---l~kAL~l~P~n~~a~~-~~~k~~~rA~eaL~el~~a~~~~P 243 (479)
.+. +..-+++.|.-..... -+-..|+.-.++|.+++..+.+++
T Consensus 292 vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~~~k~~llLD~ 338 (466)
T KOG0686|consen 292 VIKNESFKLFLELEPQLREILFKFYSSKYASCLELLREIKPRLLLDM 338 (466)
T ss_pred HHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHHHhccceeech
Confidence 333 3334566664322111 234567788888888887776665
No 328
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.11 E-value=11 Score=45.62 Aligned_cols=134 Identities=20% Similarity=0.163 Sum_probs=97.5
Q ss_pred HHHHHHHHCCChHHHHH------HHHH-HHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 58 DMAVVMKQLDRSEEAIE------AIKS-FRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie------~lek-al~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
..|......|.+.+|.+ .+.. ...+.|+.+ .-...|+.+|.+.|++++|+..-.+|.-+.......+.
T Consensus 937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~--~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds--- 1011 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVA--SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS--- 1011 (1236)
T ss_pred hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHH--HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC---
Confidence 45666777788887777 3332 222334432 22345678899999999999999888887665544322
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH---HHHH-HHHHHHHcCCHHHH
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-----ESDKN---KQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-----dPdna---~a~n-LG~~L~~lGr~dEA 201 (479)
|+....+.+|+......++...|+..+-+|+++ .|++| ...+ ++.++...++++-|
T Consensus 1012 ---------------~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~a 1076 (1236)
T KOG1839|consen 1012 ---------------PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTA 1076 (1236)
T ss_pred ---------------HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHH
Confidence 344458899999999999999999999999987 35554 3344 99999999999999
Q ss_pred HH-HHHHHHhc
Q 011721 202 KS-LLQAVRAS 211 (479)
Q Consensus 202 i~-l~kAL~l~ 211 (479)
+. +..|+..+
T Consensus 1077 l~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1077 LRYLESALAKN 1087 (1236)
T ss_pred HHHHHHHHHHH
Confidence 99 77787754
No 329
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=84.06 E-value=3.1 Score=45.96 Aligned_cols=85 Identities=26% Similarity=0.181 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCC
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ---NDYESAERYYMKALSLES 180 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l---GdydeA~~~yrKALeLdP 180 (479)
....|+..|.+++...|... ..|.|.+.++++. |+-=.|+.-...|++++|
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~--------------------------~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~ 442 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAI--------------------------YLLENRAAALMKRKWRGDSYLALRDCHVALRLNP 442 (758)
T ss_pred HHHHHHHHHHHHhhhccchh--------------------------HHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh
Confidence 34566777777776655443 3566666666665 455567777889999999
Q ss_pred CCHHHHH-HHHHHHHcCCHHHHHHHHHHHHh-cCCC
Q 011721 181 DKNKQCN-LAICLIRLNRIAEAKSLLQAVRA-SSRN 214 (479)
Q Consensus 181 dna~a~n-LG~~L~~lGr~dEAi~l~kAL~l-~P~n 214 (479)
....++. |+.++.+++++.+|+.+..|++. .|.+
T Consensus 443 s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 443 SIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9988887 99999999999999997776654 5534
No 330
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=83.77 E-value=78 Score=35.55 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=46.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 158 AYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 158 ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
=|+.+++++-|...|+-.|.-.+|.+...+ ....|..+|+-..|.. +++.+.-
T Consensus 410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 367899999999999999999999998777 8888999999999999 7777765
No 331
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=83.62 E-value=47 Score=32.90 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHc-----CCCCHHH----HHHHHHHHH-cCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 011721 165 YESAERYYMKALSL-----ESDKNKQ----CNLAICLIR-LNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLT 233 (479)
Q Consensus 165 ydeA~~~yrKALeL-----dPdna~a----~nLG~~L~~-lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~ 233 (479)
.+.|..+|++|+++ .|.+|.. +|.+..|.+ +|+.++|+. ..+|+...-.... ...-..+..+..+++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~--~l~e~~~~d~~~ilq 219 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD--TLSEESYKDSTLILQ 219 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG--GSHTTTHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc--ccchhhhHHHHHHHH
Confidence 47899999999884 7888843 346666655 799999999 7777653321111 000123456666666
Q ss_pred HHHhh
Q 011721 234 ELESQ 238 (479)
Q Consensus 234 el~~a 238 (479)
-|+.-
T Consensus 220 lLrdN 224 (236)
T PF00244_consen 220 LLRDN 224 (236)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 332
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.31 E-value=5.9 Score=40.53 Aligned_cols=66 Identities=23% Similarity=0.233 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
...++..++..+...|+++.+++.+++++..+|-+-..+. .+...|.+.|+...||..|++.-...
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~--~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYL--RLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHH--HHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 3467788999999999999999999999999998754443 35578999999999999999988763
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.28 E-value=3.8 Score=40.02 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHH-HHHHHHHcCCHHHHH
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK----NKQCN-LAICLIRLNRIAEAK 202 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn----a~a~n-LG~~L~~lGr~dEAi 202 (479)
++++..+.||..|. ..+.++|+..|-++|++.+.+ ++.+. |+.++..+|++++|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45678888887766 789999999999999996554 56777 999999999999884
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.02 E-value=1.7 Score=32.12 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCHHHHHH-HHHHH
Q 011721 187 NLAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 187 nLG~~L~~lGr~dEAi~-l~kAL 208 (479)
+||.+|+.+|+++.|.. +.+.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 36777777777777777 33334
No 335
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.96 E-value=3.8 Score=28.91 Aligned_cols=32 Identities=22% Similarity=0.082 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHH--HHHHHHhcCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEA--IKSFRCLCAD 85 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~--lekal~l~P~ 85 (479)
+.++.+|..+..+|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3567788888889999999988 4466666554
No 336
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.60 E-value=92 Score=35.21 Aligned_cols=154 Identities=18% Similarity=0.087 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHc------------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-----hcCCC----------
Q 011721 34 DPSRAISLFWAAINA------------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC-----LCADD---------- 86 (479)
Q Consensus 34 d~eeAi~~y~kAL~l------------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~-----l~P~d---------- 86 (479)
-|++|...|.-|... .|-+.+.+..++.+...+|+.+-|...+++++- +.|..
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 466777777766652 345668899999999999999999999888653 22221
Q ss_pred ---hH-HHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHH-HHHHHHHHH
Q 011721 87 ---SQ-ESLDNVLL---ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS-RISGNLAWA 158 (479)
Q Consensus 87 ---a~-~~l~~aLg---~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~-~al~nLG~a 158 (479)
+. -.+.++|. .-+.+.|-+.-|.+..+-.+.++|.- ++ .+++.+-..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e-------------------------DPl~~l~~ID~~ 387 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE-------------------------DPLGILYLIDIY 387 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC-------------------------CchhHHHHHHHH
Confidence 00 01112211 33456788888888888777776541 11 122222222
Q ss_pred HHHcCCHHHHHHHHHHH-----HHcCCCCHHHHHHHHHHHHcCC---HHHHHH-HHHHHHhcC
Q 011721 159 YLQQNDYESAERYYMKA-----LSLESDKNKQCNLAICLIRLNR---IAEAKS-LLQAVRASS 212 (479)
Q Consensus 159 y~~lGdydeA~~~yrKA-----LeLdPdna~a~nLG~~L~~lGr---~dEAi~-l~kAL~l~P 212 (479)
.++..+|.=-|..+... |.+-|+.+-..-||..|..... -..|.. +.+|+...|
T Consensus 388 ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 388 ALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 23333444334433333 3445555444446666666654 455666 667777776
No 337
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.74 E-value=94 Score=34.72 Aligned_cols=203 Identities=14% Similarity=0.024 Sum_probs=117.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRCL 82 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~----~~Al~~LA~vL~~~GrydEAie~lekal~l 82 (479)
.+-...+..|.|..-.+..+......|+.+.|+..+...+. +.. .--++.+|.++.-+-+|..|-..+..+...
T Consensus 255 ~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de 332 (546)
T KOG3783|consen 255 ALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE 332 (546)
T ss_pred HhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 34455667788877555444455556668888888888777 321 123567899999999999999999887766
Q ss_pred cCCChHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhch---hHH-----------hcCCCc-----------
Q 011721 83 CADDSQESLDNVLLELYK--------RSKRIEEEIELLKRKLKKTE---EVI-----------ACGGKS----------- 129 (479)
Q Consensus 83 ~P~da~~~l~~aLg~lY~--------klGr~deAie~lekALkl~p---~~l-----------a~~~k~----------- 129 (479)
..= ..+.+.+..|.+|. ..|+-++|-.+++....+.- +.+ .+....
T Consensus 333 sdW-S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P 411 (546)
T KOG3783|consen 333 SDW-SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASP 411 (546)
T ss_pred hhh-hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccch
Confidence 432 22333332322322 23455666555555444321 110 000000
Q ss_pred -hHHHHh----------hchhHHH-----hh-hhhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC----HH
Q 011721 130 -TKIARS----------QGRKTQI-----TL-VQELS-RISGNLAWAYLQQNDYESAERYYMKALSL---ESDK----NK 184 (479)
Q Consensus 130 -~~~A~~----------~g~k~~l-----~L-~pe~~-~al~nLG~ay~~lGdydeA~~~yrKALeL---dPdn----a~ 184 (479)
.+.+.. ...+... .+ ++++. -.++.+|.++..+|+-..|..+|..+++- .-.+ |.
T Consensus 412 ~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~Pf 491 (546)
T KOG3783|consen 412 YYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPF 491 (546)
T ss_pred HHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccH
Confidence 000000 0000000 11 22222 23466799999999999999999988843 2222 34
Q ss_pred HHH-HHHHHHHcCC-HHHHHH-HHHHHHhcC
Q 011721 185 QCN-LAICLIRLNR-IAEAKS-LLQAVRASS 212 (479)
Q Consensus 185 a~n-LG~~L~~lGr-~dEAi~-l~kAL~l~P 212 (479)
++. ||..|..+|. +.+|.. +++|-....
T Consensus 492 A~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 492 ALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 555 9999999988 999999 666655443
No 338
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.58 E-value=3.5 Score=38.08 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+.++.|+..++++|+|+.|+.+....|+.+|+|..+..
T Consensus 72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 47899999999999999999999999999999976543
No 339
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.54 E-value=15 Score=34.47 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+....+.+...+++.+..++...--+.|+....-..-|.++...|+++||+.+|+.+..-.+..+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 33445556677888887777655557777777777778888888888888888887766665543
No 340
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.19 E-value=23 Score=39.17 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCC-HHHHHH-HHHHHHhcCCCccc
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNR-IAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr-~dEAi~-l~kAL~l~P~n~~a 217 (479)
+...|.+......+.+.|.+--..|.++|..+|++++.+. -|.-.++-+. ++.|.. ++++|+.+|+++..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 4456666665556666699999999999999999999887 6777777775 888888 99999999999874
No 341
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.85 E-value=47 Score=33.34 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HHcCCCCHHHHH--HHHHHHHcCCHHHHHH
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKA----------------LSLESDKNKQCN--LAICLIRLNRIAEAKS 203 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKA----------------LeLdPdna~a~n--LG~~L~~lGr~dEAi~ 203 (479)
+++.+..+|.+|.+.|+|.+|+.+|-.. ..-.|...+.+. .-.-|+.+|+...|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence 5679999999999999999999988532 112344444433 3344556666666666
No 342
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.67 E-value=8.8 Score=42.22 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=95.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHcCCHH
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-ADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~-P~da~~~l~~aLg~lY~klGr~d 106 (479)
-++..||.-.|-.....++...|.++.-....+.+...+|.|+.|...+..+-..- ..+.. ..++..-...+|+++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~---~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST---LRCRLRSLHGLARWR 374 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH---HHHHHHhhhchhhHH
Confidence 35778999989888888898777777767778899999999999998875443221 11111 112234456788888
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN-KQ 185 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna-~a 185 (479)
+|...-.-.|.- .-++++++.-.+....++|-+++|..+.++.+.++|... .+
T Consensus 375 ~a~s~a~~~l~~--------------------------eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 375 EALSTAEMMLSN--------------------------EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHHhcc--------------------------ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 887654433321 112334444445556678889999999999999998754 34
Q ss_pred HH-HH-HHHHHcC-CHHHHHH
Q 011721 186 CN-LA-ICLIRLN-RIAEAKS 203 (479)
Q Consensus 186 ~n-LG-~~L~~lG-r~dEAi~ 203 (479)
.| |. .-|...| -|.||..
T Consensus 429 v~~~~~~~~~~~~~~~~~~~~ 449 (831)
T PRK15180 429 VNFLSSTQYFNDGNAFSEAFH 449 (831)
T ss_pred eeeeccceeccCcchHHHHHH
Confidence 44 43 3344444 3566655
No 343
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.52 E-value=8.1 Score=39.56 Aligned_cols=63 Identities=13% Similarity=0.031 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
.....++..++..+...|+++.++..+++.++++|-+...|. |=.+|...|+...|+. |.+.-
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344568899999999999999999999999999999998887 8889999999999999 66543
No 344
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=80.42 E-value=66 Score=34.22 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC--------------C-
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA--------------D- 85 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P--------------~- 85 (479)
|-..-++....+.++.+-+.....|++++|..+.||..||.- ..--..+|..+|+++++... .
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 333445667788889998999999999999998888766542 22345566677766654311 0
Q ss_pred --------ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 011721 86 --------DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTE 120 (479)
Q Consensus 86 --------da~~~l~~aLg~lY~klGr~deAie~lekALkl~p 120 (479)
+...++-.-|+.+-.++|+..+|+..++...+-.|
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 11122333356778889999999999988777665
No 345
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=80.34 E-value=10 Score=44.89 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=69.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHC----C---ChHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRV---DSALKDMAVVMKQL----D---RSEEAIEAIKSFRCLCADDSQESLDNVLL 96 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~---~~Al~~LA~vL~~~----G---rydEAie~lekal~l~P~da~~~l~~aLg 96 (479)
.+.+..+.|+.|+..|++.-..-|.- .+|.+.+|+.+..+ | .+++|+..|+.+.. .|.-+-.+++-+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 559 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA-- 559 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH--
Confidence 56788899999999999988776653 35777788776543 3 47788887776432 344344455544
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEV 122 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~ 122 (479)
-+|.++|+++|-+.+|.-|++.+|+.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999999998753
No 346
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.78 E-value=8.7 Score=42.23 Aligned_cols=120 Identities=16% Similarity=0.101 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHH-HHHhcCCCccc---hHH
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQ-AVRASSRNEKM---DES 220 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~k-AL~l~P~n~~a---~~~ 220 (479)
|.++......+.+...+|.|+.|...+.-+-.+-.....+.. +-.-+..+|++++|..+-. .|...-++... ...
T Consensus 320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~ 399 (831)
T PRK15180 320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAG 399 (831)
T ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecc
Confidence 444555566789999999999999988766555444334444 6667788999999999444 44333333332 112
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCChhhHHHHHhhhhhhhhcCCCCC
Q 011721 221 YAKSFEHASLMLTELESQSMLQPTDYGEDKRKKILSSCTYINGSEEN 267 (479)
Q Consensus 221 ~~k~~~rA~eaL~el~~a~~~~P~~~~~~~~~~~~~~~~~i~~~~~~ 267 (479)
....++-..+.+-..+.-+.++|.++. ---++++.+.+.+..+.+
T Consensus 400 sa~~l~~~d~~~~~wk~~~~~~~~~~~--g~v~~~~~~~~~~~~~~~ 444 (831)
T PRK15180 400 SADALQLFDKSYHYWKRVLLLNPETQS--GWVNFLSSTQYFNDGNAF 444 (831)
T ss_pred cHHHHhHHHHHHHHHHHHhccCChhcc--cceeeeccceeccCcchH
Confidence 234445556666777778888988765 334566666666666654
No 347
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=79.50 E-value=13 Score=33.09 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 167 SAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.|+++|.++..+.|+.+..+. ||.=+-..--|+++.. ..++|.+.
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 378999999999999976655 8877666677888888 88887643
No 348
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.88 E-value=51 Score=35.72 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=84.9
Q ss_pred HHHHHHCCChHHHHHHHHHHHH-hcCCCh------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRC-LCADDS------QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~-l~P~da------~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
...+..+.++.+|.++-...+. +.-.+- .+.+...+...|...|+...-...+..-+....-..
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh--------- 203 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH--------- 203 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC---------
Confidence 3445678999999987765433 222111 112222233567777886666666655554411100
Q ss_pred HHhhchhHHHhhhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH-H-H-HHHHHHHcCCHHHHHH-HH
Q 011721 133 ARSQGRKTQITLVQE-LSRISGNLAWAYLQQNDYESAERYYMKALSLE--SDKNKQ-C-N-LAICLIRLNRIAEAKS-LL 205 (479)
Q Consensus 133 A~~~g~k~~l~L~pe-~~~al~nLG~ay~~lGdydeA~~~yrKALeLd--Pdna~a-~-n-LG~~L~~lGr~dEAi~-l~ 205 (479)
+.+ .+-..+.|=..|+..+.|+.|...-.|+.--+ .++..+ | . +|.+..-+++|..|.. +.
T Consensus 204 ------------d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~ 271 (493)
T KOG2581|consen 204 ------------DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFL 271 (493)
T ss_pred ------------cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHH
Confidence 000 11244556778889999999999888876322 222222 3 3 9999999999999999 99
Q ss_pred HHHHhcCCCcc
Q 011721 206 QAVRASSRNEK 216 (479)
Q Consensus 206 kAL~l~P~n~~ 216 (479)
+|+...|.+..
T Consensus 272 qa~rkapq~~a 282 (493)
T KOG2581|consen 272 QALRKAPQHAA 282 (493)
T ss_pred HHHHhCcchhh
Confidence 99999998543
No 349
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=78.86 E-value=6.8 Score=38.34 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 108 EIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 108 Aie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
|+.+|.+|+.+.|... ..|+.||.++...|+.=+|+-+|-+++...--.+.+..
T Consensus 1 A~~~Y~~A~~l~P~~G--------------------------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~ 54 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG--------------------------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARE 54 (278)
T ss_dssp HHHHHHHHHHH-TTBS--------------------------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHH
T ss_pred CHHHHHHHHHhCCCCC--------------------------CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHH
Confidence 5678888888766533 38999999999999999999999999987544565554
Q ss_pred -HHHHHHH
Q 011721 188 -LAICLIR 194 (479)
Q Consensus 188 -LG~~L~~ 194 (479)
|...+.+
T Consensus 55 NL~~lf~~ 62 (278)
T PF10373_consen 55 NLQKLFEK 62 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 8887777
No 350
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.67 E-value=62 Score=34.37 Aligned_cols=61 Identities=13% Similarity=-0.055 Sum_probs=41.7
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~--~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
..+.-+.+.++|..|...|..+...-|.+.. ....++.+-.+-...++.+|.+.++..+..
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566788999999999999988875333322 122222333445678889999999987765
No 351
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.21 E-value=17 Score=40.19 Aligned_cols=87 Identities=13% Similarity=0.046 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 36 SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRK 115 (479)
Q Consensus 36 eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekA 115 (479)
.+-..+|+.|+...+.+...+.+......+.+.+.+--.+|.+++..+|++++.++..+. ..|...-..+.|...|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHH
Confidence 444678999998777777777777777777788999999999999999999987766543 3455555599999999999
Q ss_pred HHhchhHH
Q 011721 116 LKKTEEVI 123 (479)
Q Consensus 116 Lkl~p~~l 123 (479)
|+.+|+..
T Consensus 167 LR~npdsp 174 (568)
T KOG2396|consen 167 LRFNPDSP 174 (568)
T ss_pred hhcCCCCh
Confidence 99988643
No 352
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=76.69 E-value=12 Score=42.48 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
++|+-.|..+....+|+||.+.|.||
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 36666677777777777777766655
No 353
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.39 E-value=72 Score=38.43 Aligned_cols=55 Identities=22% Similarity=0.142 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHH
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQ 206 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~k 206 (479)
+.+.+|..||.+-++.|...+|++.|-|| |++..|. .-.+-...|.|++-+.++.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 44579999999999999999999999876 6676666 7777788899999988443
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.67 E-value=39 Score=35.19 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=55.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH----cCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-----hcCCChHHHHHHH
Q 011721 26 KRAQLVEKDPSRAISLFWAAIN----AGD--RVDSALKDMAVVMKQLDRSEEAIEAIKSFRC-----LCADDSQESLDNV 94 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~----l~p--~~~~Al~~LA~vL~~~GrydEAie~lekal~-----l~P~da~~~l~~a 94 (479)
..+++..|.|..|+.+..-.+. .++ +....+..-..+|....+...+...+..+.. .+|...++.+++.
T Consensus 132 i~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~ 211 (421)
T COG5159 132 IYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLL 211 (421)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHh
Confidence 3455666777777766655442 222 2334444455666666666666666655443 2455444445544
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~ 119 (479)
-|.+...-.+|.-|-.+|-+|++-+
T Consensus 212 sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 212 SGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred ccceeeccccchhHHHHHHHHHhcc
Confidence 4555666778888888888888754
No 355
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=74.95 E-value=35 Score=36.13 Aligned_cols=45 Identities=13% Similarity=0.030 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCCCHHHHH-HHHHHHH--cCCHHHHHH-HHHHHHhcC
Q 011721 168 AERYYMKALSLESDKNKQCN-LAICLIR--LNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a~n-LG~~L~~--lGr~dEAi~-l~kAL~l~P 212 (479)
++-.-+-+++.+..+.+++- .+.++.+ +.+|+.|+. |..-|..+|
T Consensus 270 ~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 270 ALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 33334455555544455555 6666644 346777777 777676665
No 356
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=74.82 E-value=97 Score=31.11 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHc-----CCCCHHH----HHHHHHHHH-cCCHHHHHH-HHHHHH
Q 011721 165 YESAERYYMKALSL-----ESDKNKQ----CNLAICLIR-LNRIAEAKS-LLQAVR 209 (479)
Q Consensus 165 ydeA~~~yrKALeL-----dPdna~a----~nLG~~L~~-lGr~dEAi~-l~kAL~ 209 (479)
.+.|...|++|+++ .|.+|.. +|.+..|.+ +++.++|+. ..+|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56899999999874 5778743 445666655 599999998 666654
No 357
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=74.72 E-value=13 Score=40.20 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=63.3
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhcCCC--------h---H-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRCLCADD--------S---Q-----ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI 123 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~l~P~d--------a---~-----~~l~~aLg~lY~klGr~deAie~lekALkl~p~~l 123 (479)
|..+.+++.|..|+.-|..+++++.+- + + ..+..-|..||.++++.+-|+.+-.+.|.++|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 455677788888888887777765431 1 0 11222255899999999999999998888866532
Q ss_pred hcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 124 ACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 124 a~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.-+..-|.++..+.+|.+|-+.+--|.
T Consensus 263 --------------------------rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 --------------------------RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred --------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244556788889999999887665553
No 358
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.57 E-value=26 Score=39.56 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=50.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
...++..+..+|-.++|++. .++..+ . .++..+.|+++.|.....++-
T Consensus 617 rt~va~Fle~~g~~e~AL~~-------s~D~d~-r-----Felal~lgrl~iA~~la~e~~------------------- 664 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL-------STDPDQ-R-----FELALKLGRLDIAFDLAVEAN------------------- 664 (794)
T ss_pred hhhHHhHhhhccchHhhhhc-------CCChhh-h-----hhhhhhcCcHHHHHHHHHhhc-------------------
Confidence 44566666666666666543 333211 1 134456777777665443322
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
...-|..||.+.+..|++..|.++|.+|-.+
T Consensus 665 ------------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 665 ------------SEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred ------------chHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 2236788999999999999999999998765
No 359
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.25 E-value=68 Score=35.31 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=26.5
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
.+.| .+.++..+|.+++...+|++|-.++.+
T Consensus 490 ~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 490 KIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3455 567999999999999999999999875
No 360
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.98 E-value=97 Score=30.23 Aligned_cols=136 Identities=12% Similarity=0.071 Sum_probs=84.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHHcCCHH
Q 011721 31 VEKDPSRAISLFWAAINAGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE--SLDNVLLELYKRSKRIE 106 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~--~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~--~l~~aLg~lY~klGr~d 106 (479)
..+..++|+..|...-+-+-. -.-+.+..|.++.+.|+-.+|+..|..+-...|-.... ...+--+.++...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 467788888888765443322 23467788999999999999999999876655432110 11111234567778877
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-H
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-Q 185 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~-a 185 (479)
+-....+.. .- .+ +|--..+.--||.+-++.|+|..|...|..... +...+. .
T Consensus 150 dV~srvepL-a~-------d~-----------------n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprni 203 (221)
T COG4649 150 DVSSRVEPL-AG-------DG-----------------NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNI 203 (221)
T ss_pred HHHHHhhhc-cC-------CC-----------------ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHH
Confidence 654433311 10 00 011112556789999999999999999999887 444443 2
Q ss_pred HHHHHHH
Q 011721 186 CNLAICL 192 (479)
Q Consensus 186 ~nLG~~L 192 (479)
.+.+.+.
T Consensus 204 rqRAq~m 210 (221)
T COG4649 204 RQRAQIM 210 (221)
T ss_pred HHHHHHH
Confidence 3344443
No 361
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=72.79 E-value=15 Score=40.88 Aligned_cols=91 Identities=10% Similarity=-0.081 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHh
Q 011721 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR---SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQIT 143 (479)
Q Consensus 67 GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k---lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~ 143 (479)
+....|+..|.+++...|.......+.+ .++++ .|+.-.|+.....|++++|-.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nra--a~lmkRkW~~d~~~AlrDch~Alrln~s~--------------------- 444 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRA--AALMKRKWRGDSYLALRDCHVALRLNPSI--------------------- 444 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHH--HHHHhhhccccHHHHHHhHHhhccCChHH---------------------
Confidence 3455677777777777776543332222 22332 345555666666666665443
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 144 LVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 144 L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
-.+++.|+.++..++++.+|+.+...+.-..|.+...
T Consensus 445 -----~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 445 -----QKAHFRLARALNELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred -----HHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 3489999999999999999999999999899966543
No 362
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.10 E-value=1.3e+02 Score=34.62 Aligned_cols=98 Identities=14% Similarity=0.105 Sum_probs=68.0
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
+-+-|.-+.+..+|..+++.|..-+...|.|.. +.+...+..+|..+.+.|.|.+++++|-+.+|+..-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l------- 429 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL------- 429 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH-------
Confidence 335566778889999999999888877776532 344455678999999999999999999888765431
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
....+-.+....|+-++|+.+..+...+.
T Consensus 430 -------------------~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 430 -------------------CQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred -------------------HHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 12233334455666677777666665543
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.56 E-value=33 Score=28.78 Aligned_cols=63 Identities=8% Similarity=0.060 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL-DNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l-~~aLg~lY~klGr~deAie~lekALkl 118 (479)
...-|.-|..+.+.++|+..+++++...++..+-.. .-.|..+|...|+|.+.+.+-.+=+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888888899988888888776544221 122457888899998888876555544
No 364
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=70.96 E-value=6.8 Score=28.10 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=12.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~ 119 (479)
||++-...++|++|+.-|+++|++.
T Consensus 7 Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 7 LGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4444455555555555555555543
No 365
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.67 E-value=5.7 Score=42.69 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=44.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
|..++.-+|+|..|++.++. +.+....+- . .+-+-....++.+|.+|+++++|.+|++.|..
T Consensus 128 LlRvh~LLGDY~~Alk~l~~-idl~~~~l~--~---------------~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLEN-IDLNKKGLY--T---------------KVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHhccCHHHHHHHhhc-cCcccchhh--c---------------cCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888899999999998763 222222110 0 00111224789999999999999999999998
Q ss_pred HHH
Q 011721 175 ALS 177 (479)
Q Consensus 175 ALe 177 (479)
.|-
T Consensus 190 iL~ 192 (404)
T PF10255_consen 190 ILL 192 (404)
T ss_pred HHH
Confidence 874
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.43 E-value=7.8 Score=28.66 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
++|+.+|..+|+++.|...++.+++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6799999999999999999999995
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.93 E-value=45 Score=36.30 Aligned_cols=73 Identities=19% Similarity=0.091 Sum_probs=37.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHH
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEE 107 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~de 107 (479)
.....|-++.|+.+- . ++...+.| ..+.|+++.|.++.+++ ++.. ....||++...+|+++-
T Consensus 304 fL~~~G~~e~AL~~~-----~---D~~~rFeL---Al~lg~L~~A~~~a~~~-----~~~~--~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 304 FLEKKGYPELALQFV-----T---DPDHRFEL---ALQLGNLDIALEIAKEL-----DDPE--KWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHTT-HHHHHHHS-----S----HHHHHHH---HHHCT-HHHHHHHCCCC-----STHH--HHHHHHHHHHHTTBHHH
T ss_pred HHHHCCCHHHHHhhc-----C---ChHHHhHH---HHhcCCHHHHHHHHHhc-----CcHH--HHHHHHHHHHHcCCHHH
Confidence 344556666666532 1 22334443 45677777777654321 1221 22335677777777777
Q ss_pred HHHHHHHHHHh
Q 011721 108 EIELLKRKLKK 118 (479)
Q Consensus 108 Aie~lekALkl 118 (479)
|+.+|+++-..
T Consensus 366 Ae~c~~k~~d~ 376 (443)
T PF04053_consen 366 AEECYQKAKDF 376 (443)
T ss_dssp HHHHHHHCT-H
T ss_pred HHHHHHhhcCc
Confidence 77777765544
No 368
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.33 E-value=49 Score=32.71 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKN------KQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna------~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
+...+|..|+..|+|++|+.+|+.+...--... .... |..|+..+|+.++.+. ..+.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 567899999999999999999999976533321 2233 8889999999998888 5553
No 369
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.85 E-value=1.4e+02 Score=31.78 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=39.8
Q ss_pred HHHcCCHHHHHHHHHHHHHc-CCCcH-HHHHHH--HHHHHHCCChHHHHHHHHHHHHh
Q 011721 29 QLVEKDPSRAISLFWAAINA-GDRVD-SALKDM--AVVMKQLDRSEEAIEAIKSFRCL 82 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l-~p~~~-~Al~~L--A~vL~~~GrydEAie~lekal~l 82 (479)
.+..++|..|...|...+.. .++.. ..+..+ |.-+...-+|.+|.+.++.++..
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46779999999999998873 44332 344444 45567789999999999987654
No 370
>PF12854 PPR_1: PPR repeat
Probab=66.53 E-value=11 Score=25.84 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lek 114 (479)
.+.|...|.+.|+.++|++.|++
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh
Confidence 34456677777777777777664
No 371
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.74 E-value=25 Score=29.06 Aligned_cols=27 Identities=22% Similarity=0.075 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
.+...|.-+-+.|++++|+.+|+++++
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 556677788888999888888876654
No 372
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.39 E-value=1.2e+02 Score=32.33 Aligned_cols=84 Identities=5% Similarity=-0.056 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCCcHHHH---HHHHHHHHHCCChHHHHHHHHHHHH---h-------cCCC------------------
Q 011721 38 AISLFWAAINAGDRVDSAL---KDMAVVMKQLDRSEEAIEAIKSFRC---L-------CADD------------------ 86 (479)
Q Consensus 38 Ai~~y~kAL~l~p~~~~Al---~~LA~vL~~~GrydEAie~lekal~---l-------~P~d------------------ 86 (479)
+...|.++.+.-|+...++ ++-|.++...++|.+....|..+-. . .|..
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Confidence 3456666666544443333 2457888888888777665543321 1 1110
Q ss_pred --h-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 87 --S-QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 87 --a-~~~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
- ...+++.++.-|+..++++.|.-.|++|......
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~ 157 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRR 157 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHH
Confidence 0 0123333455688899999999999999987544
No 373
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=63.37 E-value=11 Score=39.91 Aligned_cols=113 Identities=19% Similarity=0.087 Sum_probs=77.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
....+.++++.|..-|.++++........... .... + ...+...-...+.+++.+-+..+.+..|+..-.-++
T Consensus 230 ~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~---e~~~---~-~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 230 NKEFKKQRYREALAKYRKALRYLSEQSRDREK---EQEN---R-IPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhhhccHhHHHHHHHHHhhhhccccccccc---cccc---c-cccccccccccccchHHhcccccCCCcceecccccc
Confidence 44678899999999999998764321000000 0000 0 000111112355678888889999999998888888
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.+++...++. .+..++.+.++++|++ +..+....|++..
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 88888776666 8999999999999999 8888888888755
No 374
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.36 E-value=67 Score=31.77 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHcCC-----Cc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHcC
Q 011721 34 DPSRAISLFWAAINAGD-----RV-DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVLLELYKRSK 103 (479)
Q Consensus 34 d~eeAi~~y~kAL~l~p-----~~-~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aLg~lY~klG 103 (479)
.....+.++.+|+..-. .. ......||..|...|++++|++.|+.+....-.+.. ..+...+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34556777777776321 11 123347899999999999999999988665544321 222233457888888
Q ss_pred CHHHHHHHHHHH
Q 011721 104 RIEEEIELLKRK 115 (479)
Q Consensus 104 r~deAie~lekA 115 (479)
+.++.+.+.-+.
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 888877765444
No 375
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=61.74 E-value=75 Score=36.80 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKS 78 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lek 78 (479)
.|+.++|..+...-.+++|.++|..
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666666654
No 376
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.44 E-value=14 Score=30.48 Aligned_cols=34 Identities=32% Similarity=0.239 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 011721 34 DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL 82 (479)
Q Consensus 34 d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l 82 (479)
+.++|+.+..+|+..+ ..|+|++|+.+|..+++.
T Consensus 2 ~l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 3456666666665432 456777777777666544
No 377
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=59.87 E-value=20 Score=28.20 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
.+...|.-+-..|+|++|+.+|.+|++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456677788889999999998887764
No 378
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.72 E-value=17 Score=30.07 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 011721 157 WAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeL 178 (479)
.---..|+|++|+.+|..|++.
T Consensus 14 ~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 14 FDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHhhHhhhHHHHHHHHHHHHHH
Confidence 3345668888888888888763
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.20 E-value=29 Score=36.11 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
.++..+..|...|.+.+|+.+.++++.++|=+...+. |-.+|..+|+-=+|+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhh
Confidence 4455678899999999999999999999999887776 8888999998666665
No 380
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=59.11 E-value=2.5e+02 Score=30.01 Aligned_cols=153 Identities=16% Similarity=0.061 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCC----cHHHHHHHHHHHHHCCCh-------HHHHHHHHHHHHhc-------
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINA--GDR----VDSALKDMAVVMKQLDRS-------EEAIEAIKSFRCLC------- 83 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l--~p~----~~~Al~~LA~vL~~~Gry-------dEAie~lekal~l~------- 83 (479)
++++..+.-+||+.|...|+.+.+. +++ .+.++-..|+.+.-.+.. ++...+++.+....
T Consensus 213 ~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~ 292 (414)
T PF12739_consen 213 RLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPR 292 (414)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhccc
Confidence 5678888999999999999988763 222 123333445555555532 34444555433221
Q ss_pred -CC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--hhHHhcCC-CchHHHHhhchhHHHhh-h--h-----hHHH
Q 011721 84 -AD-DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT--EEVIACGG-KSTKIARSQGRKTQITL-V--Q-----ELSR 150 (479)
Q Consensus 84 -P~-da~~~l~~aLg~lY~klGr~deAie~lekALkl~--p~~la~~~-k~~~~A~~~g~k~~l~L-~--p-----e~~~ 150 (479)
.. ..........+.++...|.+.+|...+-+..... .....+.. .-.+.+-.++.. +.. . + ....
T Consensus 293 ~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~--~~~~~~~~~~~r~RK~a 370 (414)
T PF12739_consen 293 CSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYAS--LRSNRPSPGLTRFRKYA 370 (414)
T ss_pred cccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcc--cccCCCCccchhhHHHH
Confidence 11 1112222334578888999988888777776652 11110000 000000000000 000 0 0 0112
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 151 ISGN-LAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 151 al~n-LG~ay~~lGdydeA~~~yrKALeL 178 (479)
.+.. -|.-|...|+...|+.+|.+|+.+
T Consensus 371 f~~vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 371 FHMVLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3333 367788888888888888888765
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=57.30 E-value=22 Score=38.25 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=44.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHH----HhcCCC--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFR----CLCADD--SQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal----~l~P~d--a~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
+..|..++.-.|+|..|++.++.+- .+.... ....+.+.+|.+|..++||.+|+..|...|-.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778899999999999986521 011111 12233444678999999999999999999865
No 382
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.06 E-value=2.4e+02 Score=29.17 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=101.7
Q ss_pred hCCCC--CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 14 KVPAG--DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 14 k~p~~--~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l 91 (479)
-+|+. +.|.++-+. ..+|.++..+|+..|..+...+ .|+.+.+.++.++|.+-..+-
T Consensus 23 PlpqdDg~npvv~I~Y----te~fr~~m~YfRAI~~~~E~S~-----------------RAl~LT~d~i~lNpAnYTVW~ 81 (318)
T KOG0530|consen 23 PLPQDDGPNPVVKIAY----TEDFRDVMDYFRAIIAKNEKSP-----------------RALQLTEDAIRLNPANYTVWQ 81 (318)
T ss_pred cCCCCCCCCcceEeee----chhHHHHHHHHHHHHhccccCH-----------------HHHHHHHHHHHhCcccchHHH
Confidence 34444 355544332 4578888888877766665544 566667778888998743321
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH-HHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE-SAER 170 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd-eA~~ 170 (479)
.. ...+-.-..+..+-++++.+.+.-+|+ +-.++...-.+....|++. .-++
T Consensus 82 yR-r~iL~~l~~dL~~El~~l~eI~e~npK--------------------------NYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 82 YR-RVILRHLMSDLNKELEYLDEIIEDNPK--------------------------NYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred HH-HHHHHHhHHHHHHHHHHHHHHHHhCcc--------------------------chhHHHHHHHHHHHhcCcccchHH
Confidence 11 111112223455566666666655433 3357888888888899988 8899
Q ss_pred HHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 171 YYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 171 ~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
..+.+|..+..|--++. ---|+..-+.++.=+. ..+.|+.+--|.
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN 181 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 99999999888877776 7777778888999999 777777765443
No 383
>PF12854 PPR_1: PPR repeat
Probab=56.82 E-value=22 Score=24.26 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSF 79 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~leka 79 (479)
...|..|-..|.+.|+.++|++.|++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 346888899999999999999998753
No 384
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=56.68 E-value=14 Score=39.04 Aligned_cols=52 Identities=13% Similarity=0.015 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc
Q 011721 144 LVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRL 195 (479)
Q Consensus 144 L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~l 195 (479)
.++....+++.+|..++.+.++++|++.++.+....|++..... +..+-...
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 34555679999999999999999999999999999999986655 54444333
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.46 E-value=2.6e+02 Score=29.23 Aligned_cols=125 Identities=11% Similarity=0.150 Sum_probs=73.1
Q ss_pred CCChHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHh
Q 011721 66 LDRSEEAIEAIKSFRCLCADDSQE--SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQIT 143 (479)
Q Consensus 66 ~GrydEAie~lekal~l~P~da~~--~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~ 143 (479)
....++|+..|++++++.+...+- ...--+..++.++|+|++-.+.|.+.|..-..+..-+. ...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy--SEK----------- 106 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY--SEK----------- 106 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc--cHH-----------
Confidence 458899999999999999876432 11112357899999999999999999986443332110 000
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH---H--HHHHHHHcCCHHHHHHHHHHHHh
Q 011721 144 LVQELSRISGNLAWAYLQQNDYESAERYYMKALSL--ESDKNKQC---N--LAICLIRLNRIAEAKSLLQAVRA 210 (479)
Q Consensus 144 L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL--dPdna~a~---n--LG~~L~~lGr~dEAi~l~kAL~l 210 (479)
..+++-..-....+.+--..+|+..|.. +..+...| | ||.+|+..|.|..-..+++.|..
T Consensus 107 -------sIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 107 -------SINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred -------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 1111111111233333344455544432 22222221 3 89999999988887775555443
No 386
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=56.15 E-value=33 Score=31.55 Aligned_cols=49 Identities=20% Similarity=0.085 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
+.+...+...+..|+|.-|.+....++..+|+|..+.. ++.+|..+|.-
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 35677788889999999999999999999999998887 88888877643
No 387
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.04 E-value=41 Score=43.30 Aligned_cols=122 Identities=12% Similarity=0.138 Sum_probs=74.6
Q ss_pred HHHHHHHHCCChHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhh
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSF-RCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQ 136 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~leka-l~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~ 136 (479)
.||.+-.+.+.|..|+-++++- ..--+.+....+...+-.+|...+++|.-......-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~------------------ 1449 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD------------------ 1449 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC------------------
Confidence 4677778888888888888774 111122223333333435777777776655444321110
Q ss_pred chhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHHh
Q 011721 137 GRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQAVRA 210 (479)
Q Consensus 137 g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~l 210 (479)
.-+...=......|++..|..+|++++..+|+....++ .-......|.++..+.....+..
T Consensus 1450 -------------~sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~ 1511 (2382)
T KOG0890|consen 1450 -------------PSLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLII 1511 (2382)
T ss_pred -------------ccHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhh
Confidence 01222233456789999999999999999999876666 55566666777777764444433
No 388
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=55.37 E-value=30 Score=21.82 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 163 NDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 163 GdydeA~~~yrKALeLdPdna~a~n 187 (479)
|+++.|...|++++...|.+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHH
Confidence 5678889999999999998877665
No 389
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=54.61 E-value=22 Score=37.32 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN--LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n--LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+.++..|...+......|.|.+--..|-.++..+|.|.+.|. .+.-|...++++.+.. +.++|..+|+++.+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 455667777776667888999999999999999999998775 6677788899999999 99999999999875
No 390
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=54.57 E-value=2.1e+02 Score=33.78 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcc
Q 011721 193 IRLNRIAEAKSLLQAVRASSRNEK 216 (479)
Q Consensus 193 ~~lGr~dEAi~l~kAL~l~P~n~~ 216 (479)
...|++++|+...+.+.+-|.+..
T Consensus 718 y~~~~~e~aL~~le~l~LiP~~~~ 741 (835)
T KOG2168|consen 718 YHNGEWEEALSILEHLDLIPLDPL 741 (835)
T ss_pred HhhhHHHHHHHHHHHHhccCCChh
Confidence 456899999998889998887654
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=53.26 E-value=54 Score=34.23 Aligned_cols=102 Identities=16% Similarity=0.083 Sum_probs=68.9
Q ss_pred HHHHHHHhhCCCCCcHHHHHHH-HHHHcCCH-------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKR-AQLVEKDP-------------SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEE 71 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~-~~L~~gd~-------------eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydE 71 (479)
.++...+..+|..-..+-.++. +.+-.|++ +.+..+|.+ .+...+..|...|.+.+
T Consensus 228 ~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~k----------llgkva~~yle~g~~ne 297 (361)
T COG3947 228 QEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMK----------LLGKVARAYLEAGKPNE 297 (361)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHH----------HHHHHHHHHHHcCChHH
Confidence 3555667777777655554443 23333432 223333322 23345677899999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 72 AIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 72 Aie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
|+++.++++.++|-+.+. +..|..+|...|+--.|+.+|++--+.-
T Consensus 298 Ai~l~qr~ltldpL~e~~--nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 298 AIQLHQRALTLDPLSEQD--NKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHhhcChhhhHH--HHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 999999999999986543 4456688999999999999988766543
No 392
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.11 E-value=2e+02 Score=34.02 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKNK-QCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna~-a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
|-.++..+|+|++|+.++.. +.|+... ..+ .|..|+.. ..++-.. +.+-+
T Consensus 496 l~ille~~~ny~eAl~yi~s---lp~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 496 LDILLEDLHNYEEALRYISS---LPISELLRTLNKYGKILLEH-DPEETMKILIELI 548 (933)
T ss_pred HHHHHHHhcCHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHH
Confidence 44567788889999888764 4555543 334 77777664 3455555 44433
No 393
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=52.20 E-value=4e+02 Score=30.23 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCH-HHHH-HHHHHHHcCCHHHHHHH-HHHHHhcC
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSL--ESDKN-KQCN-LAICLIRLNRIAEAKSL-LQAVRASS 212 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeL--dPdna-~a~n-LG~~L~~lGr~dEAi~l-~kAL~l~P 212 (479)
+-.-.-..+..+++-..|...|++++.- .|+.. ..|. +-..-..-|+..-++.+ .+.....|
T Consensus 437 yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 437 YVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 3344455677889999999999999987 66655 4566 55555667888888884 34444444
No 394
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=51.26 E-value=3e+02 Score=29.57 Aligned_cols=56 Identities=11% Similarity=-0.105 Sum_probs=37.0
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 59 MAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-----ESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 59 LA~vL~~~GrydEAie~lekal~l~P~da~-----~~l~~aLg~lY~klGr~deAie~lek 114 (479)
.+..+.+.++|..|...|..++...+.... ....++-+-.+-..-++++|...+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 455678899999999999988877543211 11222223344567788888888885
No 395
>PF13041 PPR_2: PPR repeat family
Probab=50.98 E-value=68 Score=23.14 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
.+|..+-..|.+.|++++|.++|+++.+..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 356677778888888888888888877653
No 396
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.94 E-value=31 Score=28.47 Aligned_cols=28 Identities=32% Similarity=0.296 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.+...|.-+-..|+|++|+.+|..|+++
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556677788889999999988888753
No 397
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=50.87 E-value=42 Score=30.92 Aligned_cols=49 Identities=8% Similarity=-0.015 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRI 105 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~ 105 (479)
.+...+.-....|+|.-|.+++..++..+|++.++.. ..+++|.++|.-
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~--l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQ--LKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHH--HHHHHHHHHHHh
Confidence 3445555666777777777777777777777765432 234555555543
No 398
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.65 E-value=3.9e+02 Score=35.15 Aligned_cols=148 Identities=10% Similarity=0.053 Sum_probs=94.2
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-hHHhcC-CC
Q 011721 51 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTE-EVIACG-GK 128 (479)
Q Consensus 51 ~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p-~~la~~-~k 128 (479)
.....|...|.+-...|+++-|-.++-.+.+..+... ..-.+.+.-..|+...|+..+++.+..+- +..... ..
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i----~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEI----VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchH----HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 4567899999999999999999999988887775432 22345778899999999999999997643 211110 00
Q ss_pred c-hHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCHHHHH-HHHHHH-----------
Q 011721 129 S-TKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY--ESAERYYMKALSLESDKNKQCN-LAICLI----------- 193 (479)
Q Consensus 129 ~-~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy--deA~~~yrKALeLdPdna~a~n-LG~~L~----------- 193 (479)
. ...... ...+...++......|++ ++-+++|..|.++.|...+.+. ||..|.
T Consensus 1744 p~~~n~~i------------~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~ 1811 (2382)
T KOG0890|consen 1744 PQSVNLLI------------FKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKM 1811 (2382)
T ss_pred chhhhhhh------------hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccc
Confidence 0 000000 012445555555555553 4567899999999996654433 664443
Q ss_pred -HcCCHHH---HHH-HHHHHHhcCCC
Q 011721 194 -RLNRIAE---AKS-LLQAVRASSRN 214 (479)
Q Consensus 194 -~lGr~dE---Ai~-l~kAL~l~P~n 214 (479)
..|++.- |+. +.+++.....+
T Consensus 1812 E~~g~~~~~l~~~~~~~~sl~yg~~~ 1837 (2382)
T KOG0890|consen 1812 EKSGRVLSLLKAIYFFGRALYYGNQH 1837 (2382)
T ss_pred cccccHHHHHHHHHHHHHHHHhcchh
Confidence 2455555 555 56666665544
No 399
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=50.48 E-value=1.2e+02 Score=28.26 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
++..+.-+|.+|.+.|+..+|.+.+++|.+-.
T Consensus 119 ~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 119 NPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 45688888899999999999988888887654
No 400
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=50.36 E-value=75 Score=31.70 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=25.0
Q ss_pred HHHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCCCCH
Q 011721 150 RISGNLAWAYL---------QQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 150 ~al~nLG~ay~---------~lGdydeA~~~yrKALeLdPdna 183 (479)
..|-.+|.+++ ..++...|+.+|++|++++|+-.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 45666777774 45677888888888888888764
No 401
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=49.78 E-value=23 Score=22.31 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=8.7
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRK 115 (479)
Q Consensus 97 ~lY~klGr~deAie~lekA 115 (479)
..|.+.|++++|...|++.
T Consensus 8 ~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHccchHHHHHHHHHHH
Confidence 3444444444444444443
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.64 E-value=66 Score=30.27 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
..+.+++.++..+|+.++|....+++..+.|
T Consensus 145 ~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 145 NVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445555555555555555555555555555
No 403
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=49.60 E-value=34 Score=21.80 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=11.7
Q ss_pred HHHHHHHHCCChHHHHHHHHHHH
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFR 80 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal 80 (479)
.+-..|.+.|++++|++.|.++.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444555555555555555443
No 404
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.91 E-value=3.9e+02 Score=29.11 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=67.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHH-HHHHH---HHc-CCHHHHHH-HHHHHHhcCC
Q 011721 142 ITLVQELSRISGNLAWAYLQQND--YESAERYYMKALSLESDKNKQCN-LAICL---IRL-NRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 142 l~L~pe~~~al~nLG~ay~~lGd--ydeA~~~yrKALeLdPdna~a~n-LG~~L---~~l-Gr~dEAi~-l~kAL~l~P~ 213 (479)
+.++|+.-.+|+.+.+++.+.+. +..-++...++|++||.|--+++ -=.+. ... ....+=+. ..++|..++.
T Consensus 102 L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfS 181 (421)
T KOG0529|consen 102 LKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFS 181 (421)
T ss_pred HHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccch
Confidence 34566666799999999998775 58899999999999999875543 11111 111 22333344 5567777776
Q ss_pred Cccc-hH-HH-H------------HHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 214 NEKM-DE-SY-A------------KSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 214 n~~a-~~-~~-~------------k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
|-.+ .. +. + ........-|..+.+++--+|.||.
T Consensus 182 NYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS 230 (421)
T KOG0529|consen 182 NYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQS 230 (421)
T ss_pred hhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccc
Confidence 6432 11 11 1 1234455566667778888888886
No 405
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=48.79 E-value=3e+02 Score=27.83 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=33.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+..+...+|+...+.-++..|.+......|-.+|.-.|+++.|...++-+-.+.|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4445556666666666666666555555555555666666666666665555555553
No 406
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=48.26 E-value=30 Score=27.21 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=10.0
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 011721 101 RSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 101 klGr~deAie~lekALkl 118 (479)
+.|++++|+.+|.+++..
T Consensus 17 ~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HTTSHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 345555555555555554
No 407
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=48.21 E-value=39 Score=22.71 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=20.8
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHHcC
Q 011721 150 RISGNLA--WAYLQQN-----DYESAERYYMKALSLE 179 (479)
Q Consensus 150 ~al~nLG--~ay~~lG-----dydeA~~~yrKALeLd 179 (479)
++.++|| .+|..-. ++++|+.+|++|.+.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4677888 4444433 5789999999987653
No 408
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=47.68 E-value=5.1e+02 Score=30.17 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=26.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 160 LQQNDYESAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
...+++++|...-++ .|... +.|. .|.-+.+..+|+||.+ +.+|
T Consensus 784 ve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 344555565554433 34433 3455 7888888888888887 6554
No 409
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.66 E-value=3.8e+02 Score=28.71 Aligned_cols=137 Identities=14% Similarity=0.060 Sum_probs=77.2
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhch
Q 011721 59 MAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGR 138 (479)
Q Consensus 59 LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~ 138 (479)
+-..-.+..+..+-|+.-..+++++|+-+.+++.+ + -...--..+|...|++||+.-..... ..+....++.
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLL--A--EEEa~Ti~~AE~l~k~ALka~e~~yr----~sqq~qh~~~ 261 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLL--A--EEEATTIVDAERLFKQALKAGETIYR----QSQQCQHQSP 261 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhh--h--hhhhhhHHHHHHHHHHHHHHHHHHHh----hHHHHhhhcc
Confidence 33344455666777778888999998865443322 1 23344567899999999986332211 0000111111
Q ss_pred hHHHhh-hhhHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--H-HHHHHHHHHcCCHHHHHH
Q 011721 139 KTQITL-VQELS--RISGNLAWAYLQQNDYESAERYYMKALSLESDKNK--Q-CNLAICLIRLNRIAEAKS 203 (479)
Q Consensus 139 k~~l~L-~pe~~--~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~--a-~nLG~~L~~lGr~dEAi~ 203 (479)
...... .+-+. .+-..|+++-.++|+..+|++.++...+-.|=... . -||-.+++++.-|.+...
T Consensus 262 ~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 262 QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100000 11111 23367899999999999999999998887773221 1 135555555554444433
No 410
>PF13041 PPR_2: PPR repeat family
Probab=47.20 E-value=37 Score=24.57 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl 118 (479)
.+.+...|.+.|++++|.+.|++..+.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 455678899999999999999988864
No 411
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=46.83 E-value=28 Score=28.67 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
-+...|.-+-..|+|++|+.+|.+||+
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445567778888888888888877764
No 412
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=46.60 E-value=5.8e+02 Score=31.48 Aligned_cols=51 Identities=25% Similarity=0.274 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH------HHc----CCCCHHH----HHHHHHHHHcCCHHHHHH
Q 011721 153 GNLAWAYLQQNDYESAERYYMKA------LSL----ESDKNKQ----CNLAICLIRLNRIAEAKS 203 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKA------LeL----dPdna~a----~nLG~~L~~lGr~dEAi~ 203 (479)
...|.+|...|+.++|+.+|+.+ +.+ .++-... ..|+.-+.+++++-||-.
T Consensus 956 ~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~ 1020 (1265)
T KOG1920|consen 956 DEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAK 1020 (1265)
T ss_pred cHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 44566677777777777777643 222 2222211 226666777777777766
No 413
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=45.39 E-value=46 Score=21.14 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALk 117 (479)
+.+...|.+.|++++|+..|.+...
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456789999999999999998765
No 414
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=45.20 E-value=38 Score=22.24 Aligned_cols=29 Identities=38% Similarity=0.390 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHcC
Q 011721 151 ISGNLAWAYLQQ----NDYESAERYYMKALSLE 179 (479)
Q Consensus 151 al~nLG~ay~~l----GdydeA~~~yrKALeLd 179 (479)
+.+.||.+|..- .++.+|..+|++|.+..
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 667888887642 38899999999987653
No 415
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=43.81 E-value=1.4e+02 Score=30.18 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=53.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 157 WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..+++.+...+|+...+.-++-+|.+..... |-.+|.-.|++++|.. +.-+-.+.|+...
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3467889999999999999999999998877 8999999999999999 8878889998765
No 416
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.52 E-value=41 Score=27.73 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=8.3
Q ss_pred cCCHHHHHHHHHHHHHh
Q 011721 102 SKRIEEEIELLKRKLKK 118 (479)
Q Consensus 102 lGr~deAie~lekALkl 118 (479)
.|+|++|+.+|..+++.
T Consensus 19 ~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 19 EGRYSEAVFYYKEAAQL 35 (76)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 34455555555544444
No 417
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.36 E-value=2e+02 Score=34.34 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=24.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHHHHHH
Q 011721 189 AICLIRLNRIAEAKSLLQAVRASSRNEKM--DESYAKSFEHASLMLTE 234 (479)
Q Consensus 189 G~~L~~lGr~dEAi~l~kAL~l~P~n~~a--~~~~~k~~~rA~eaL~e 234 (479)
-.+-..+.+..|=+.+++.|+.-|.+-.- .+.|++.|++|.+-|..
T Consensus 879 ~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 879 MVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSA 926 (928)
T ss_pred HHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHh
Confidence 34444556667777766666554443321 34566666666555443
No 418
>PRK11619 lytic murein transglycosylase; Provisional
Probab=43.12 E-value=5.7e+02 Score=29.34 Aligned_cols=29 Identities=17% Similarity=-0.002 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
....+-+|.++..+|+.++|..+|+++..
T Consensus 346 ~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 346 DEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 35778999999999999999999999854
No 419
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=43.05 E-value=2.4e+02 Score=28.19 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=56.0
Q ss_pred HHcCCHHHHHHHHHHHHHcC---CC-c--------HHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----cCCChHHHHH
Q 011721 30 LVEKDPSRAISLFWAAINAG---DR-V--------DSALKDMAVVMKQLDRSEEAIEAIKSFRCL-----CADDSQESLD 92 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~---p~-~--------~~Al~~LA~vL~~~GrydEAie~lekal~l-----~P~da~~~l~ 92 (479)
+--|+++.|+....-||..+ |+ + .+-..+-+......|+.-+.- .+..+..+ -|+...+.+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~-~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY-FLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHhcCCCChHHHHHHH
Confidence 34489999999999999843 21 1 122334444555566532211 12222222 2444455666
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHHhchhH
Q 011721 93 NVLLELYK---------RSKRIEEEIELLKRKLKKTEEV 122 (479)
Q Consensus 93 ~aLg~lY~---------klGr~deAie~lekALkl~p~~ 122 (479)
-.+|..+. ..++...|+.+|++|+.++|+.
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 66666552 4568889999999999998764
No 420
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.78 E-value=3.8e+02 Score=27.90 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHH----HHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHhchhHHhcCCC
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKS----FRCLCADDSQESLDNVLLELYKRSKRIEEEIELL--KRKLKKTEEVIACGGK 128 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lek----al~l~P~da~~~l~~aLg~lY~klGr~deAie~l--ekALkl~p~~la~~~k 128 (479)
.+..+...+..+..++.|++.+-. ++++.+..+.+-+...+.++|.+ -+.|-... .++.++.-. ..+.
T Consensus 28 m~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~ek---a~~ad~~~~~anl~~ll~e---~~~~ 101 (312)
T KOG3024|consen 28 MYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEK---AEVADSLLKVANLAELLGE---ADPS 101 (312)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH---HHhhHhHHHHHHHHHHHhh---cCCC
Confidence 345567778888899999987533 44556665444444444455555 11122221 222222100 0110
Q ss_pred chH------HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 129 STK------IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 129 ~~~------~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
-.+ .++.--... -.-.-.++..+..||..+..-+++.+|..+|-.+
T Consensus 102 eper~~~v~raikWS~~~-~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 102 EPERKTFVRRAIKWSKEF-GEGKYGHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred ccHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 000 010000000 0011235678999999999999999999998643
No 421
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=42.01 E-value=2.4e+02 Score=25.90 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----C----------HHHH-HHHHHHHHcCCHHHHHHHH-----HHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESD-----K----------NKQC-NLAICLIRLNRIAEAKSLL-----QAVR 209 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPd-----n----------a~a~-nLG~~L~~lGr~dEAi~l~-----kAL~ 209 (479)
-+.++|....+.++.-.|+-+|++|+.+--+ . ...+ |||..+..+|+-+=.+.|+ +.+.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999986321 1 1123 4999999999998888844 3466
Q ss_pred hcCCCccch-HHHHHHHHHHHHHHHHHHhhhhcCC
Q 011721 210 ASSRNEKMD-ESYAKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 210 l~P~n~~a~-~~~~k~~~rA~eaL~el~~a~~~~P 243 (479)
+-|..+... +++..+++=-..+|-.|.+-.+ +|
T Consensus 83 LiPQCp~~~C~afi~sLGCCk~ALl~F~KRHP-NP 116 (140)
T PF10952_consen 83 LIPQCPNTECEAFIDSLGCCKKALLDFMKRHP-NP 116 (140)
T ss_pred hccCCCCcchHHHHHhhhccHHHHHHHHHhCC-CH
Confidence 788766532 3566777777777777776643 44
No 422
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=40.63 E-value=51 Score=27.48 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=15.5
Q ss_pred HcCCHHHHHHHHHHHHHhchhHH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVI 123 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~l 123 (479)
..|+.++|+.+|++++..-..+.
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHc
Confidence 34777777777777777655544
No 423
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.74 E-value=75 Score=20.41 Aligned_cols=25 Identities=4% Similarity=0.186 Sum_probs=13.4
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHH
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFR 80 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal 80 (479)
|..+-..+.+.|+++.|..+|..+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455555566666555555543
No 424
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.35 E-value=95 Score=29.17 Aligned_cols=49 Identities=24% Similarity=0.203 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 165 YESAERYYMKALSLESDKNKQCNLAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 165 ydeA~~~yrKALeLdPdna~a~nLG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
.+..++..++.+...|+-....+++.++..+|+.++|.. ..++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445556667777777865444559999999999999999 8888889984
No 425
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=38.73 E-value=47 Score=20.82 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
|+.+=..|.+.|++++|...|++-.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45556667777777777777776544
No 426
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=38.60 E-value=64 Score=25.76 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
+...|.-+-..|+|++|+.+|.+|++
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666777888888887776653
No 427
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=38.52 E-value=3.2e+02 Score=26.96 Aligned_cols=95 Identities=14% Similarity=0.024 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-----HCCChHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMK-----QLDRSEEAIEAIKSFRCLCADDSQESLDNVL 95 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~-----~~GrydEAie~lekal~l~P~da~~~l~~aL 95 (479)
.+...-.+.-+++++++|...|+.--.-+ .++..-+.+|.-+. ..++...|+..|+.+-..+ .+++-.+..|
T Consensus 37 C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n--~~~aC~~~gL 113 (248)
T KOG4014|consen 37 CQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN--IPQACRYLGL 113 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC--CHHHHhhhhh
Confidence 33333344456778888888776543322 23445555554443 3456778888887665533 3333333222
Q ss_pred HHH---HHHcCC--HHHHHHHHHHHHHh
Q 011721 96 LEL---YKRSKR--IEEEIELLKRKLKK 118 (479)
Q Consensus 96 g~l---Y~klGr--~deAie~lekALkl 118 (479)
... --+.++ ..+|+.++.+|-.+
T Consensus 114 l~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 114 LHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred hhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 100 001222 56777777777665
No 428
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=38.18 E-value=6.5e+02 Score=28.61 Aligned_cols=130 Identities=12% Similarity=-0.009 Sum_probs=82.9
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhc
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g 137 (479)
.....-...|+++-..-.|++++.-+......++..+ ......|+.+-|-..+..+.++.
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~--~~m~~~~~~~~~~~~~~~~~~i~------------------ 361 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYA--RWMESSGDVSLANNVLARACKIH------------------ 361 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHH--HHHHHcCchhHHHHHHHhhhhhc------------------
Confidence 3344456677777777777777665555444444433 23344577777766666666652
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH---HHHHHHhcCC
Q 011721 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS---LLQAVRASSR 213 (479)
Q Consensus 138 ~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~---l~kAL~l~P~ 213 (479)
.+..+.++..-+..--..|+++.|..+|++..+--|+...+-. -..+...+|..+.+.. +...+.....
T Consensus 362 -------~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~ 434 (577)
T KOG1258|consen 362 -------VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE 434 (577)
T ss_pred -------CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc
Confidence 1222335555566777889999999999999987788876544 5667777888888883 4444433333
Q ss_pred C
Q 011721 214 N 214 (479)
Q Consensus 214 n 214 (479)
+
T Consensus 435 ~ 435 (577)
T KOG1258|consen 435 N 435 (577)
T ss_pred C
Confidence 3
No 429
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=38.14 E-value=67 Score=26.41 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=9.0
Q ss_pred cCCHHHHHHHHHHHHHh
Q 011721 102 SKRIEEEIELLKRKLKK 118 (479)
Q Consensus 102 lGr~deAie~lekALkl 118 (479)
.|++++|+.+|.++|..
T Consensus 19 ~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 19 EGRFQEALVCYQEGIDL 35 (77)
T ss_pred hccHHHHHHHHHHHHHH
Confidence 45555555555555554
No 430
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=38.04 E-value=1.2e+02 Score=27.28 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 69 SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 69 ydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lek 114 (479)
.+++.++|.-+....-....+.+....+..+...|++.+|.++|+.
T Consensus 79 ~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 79 CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3557778877666554443445555667889999999999999874
No 431
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.60 E-value=30 Score=40.12 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----h
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD--------SQESLDNVLLELYKRSKRIEEEIELLKRKLKKT----E 120 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d--------a~~~l~~aLg~lY~klGr~deAie~lekALkl~----p 120 (479)
++...+|-..|....+|+.-+.+.+.+..+ |+- .-.++.++| +--.+-|+-++|+...-.+++.. |
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFAL-NRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFAL-NRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehh-cccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 456677888889999999988887765443 321 111111111 11224577777777776666642 1
Q ss_pred hHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-CHH
Q 011721 121 EVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICLIRLN-RIA 199 (479)
Q Consensus 121 ~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~nLG~~L~~lG-r~d 199 (479)
+...+ +|+..+ + .-++.-|...+..+.|++.|+||++..|.--...|++.++...| .|+
T Consensus 279 Dm~Cl----------~GRIYK--------D--mF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 279 DMYCL----------CGRIYK--------D--MFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred ceeee----------echhhh--------h--hhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhcc
Confidence 11111 111000 0 11223344557788999999999999999877888999998887 466
Q ss_pred HHHHHHH-HHHhc
Q 011721 200 EAKSLLQ-AVRAS 211 (479)
Q Consensus 200 EAi~l~k-AL~l~ 211 (479)
...++.+ ++.++
T Consensus 339 ns~Elq~IgmkLn 351 (1226)
T KOG4279|consen 339 NSLELQQIGMKLN 351 (1226)
T ss_pred chHHHHHHHHHHH
Confidence 6666443 45554
No 432
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.99 E-value=4.9e+02 Score=31.25 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=19.1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
..|.-+...|++.+|++.|+.++-.-|
T Consensus 996 ~~gy~ltt~gKf~eAie~Frsii~~i~ 1022 (1202)
T KOG0292|consen 996 QKGYKLTTEGKFGEAIEKFRSIIYSIP 1022 (1202)
T ss_pred HHHHhhhccCcHHHHHHHHHHHHhhee
Confidence 455566777888888888887765544
No 433
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=36.47 E-value=73 Score=25.44 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
+...|.-.-..|+|++|+.+|..|++
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556667777888888888877764
No 434
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=36.08 E-value=73 Score=25.70 Aligned_cols=27 Identities=30% Similarity=0.218 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
.+...|.-.-..|+|++|+.+|.+|++
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556667777888888888777654
No 435
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=35.45 E-value=39 Score=35.52 Aligned_cols=78 Identities=8% Similarity=-0.108 Sum_probs=57.7
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH
Q 011721 44 AAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV 122 (479)
Q Consensus 44 kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~ 122 (479)
++....++++..+...+.-....|-|.+--..|.+++...|.+++.++..+ ..-|...++++.+...|.++|+++|+.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c-~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCC-AFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeec-cchhhhhccHHHHHHHHHhhhccCCCC
Confidence 333344556666666667677788888888999999999999887654422 223567889999999999999998763
No 436
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.30 E-value=5.8e+02 Score=27.24 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=59.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
.+..|.+.|+.+.|++.+.+...- +...|.+. +.......||..|....-..+-++-...
T Consensus 110 kaeYycqigDkena~~~~~~t~~k--------------tvs~g~ki------DVvf~~iRlglfy~D~~lV~~~iekak~ 169 (393)
T KOG0687|consen 110 KAEYYCQIGDKENALEALRKTYEK--------------TVSLGHKI------DVVFYKIRLGLFYLDHDLVTESIEKAKS 169 (393)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH--------------Hhhcccch------hhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 457788888888888887766553 11111111 1122446677777776666666666666
Q ss_pred HHHcCCCCHH--HH-H-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 175 ALSLESDKNK--QC-N-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 175 ALeLdPdna~--a~-n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
.++-.-|-.. .+ . -|...+...+|.+|.. +...+....
T Consensus 170 liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 170 LIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 6666555431 12 2 5777777778888888 666665443
No 437
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=35.30 E-value=80 Score=25.20 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHHHHhc
Q 011721 102 SKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 102 lGr~deAie~lekALkl~ 119 (479)
.|++++|+.+|.++++..
T Consensus 21 ~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 21 AGDYEEALELYKKAIEYL 38 (77)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 455555555555555543
No 438
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=35.10 E-value=3.1e+02 Score=23.93 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=28.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK 77 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~le 77 (479)
..+.+...+.+++..+..++.....+..+..+|... +..+.++.+.
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 346788888888888877665555555566666543 3344444444
No 439
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=34.84 E-value=80 Score=26.11 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=9.3
Q ss_pred HHHHHHCCChHHHHHHHHH
Q 011721 60 AVVMKQLDRSEEAIEAIKS 78 (479)
Q Consensus 60 A~vL~~~GrydEAie~lek 78 (479)
|+-+-..|++.+|+.+|+.
T Consensus 13 AVe~D~~gr~~eAi~~Y~~ 31 (75)
T cd02682 13 AVKAEKEGNAEDAITNYKK 31 (75)
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 3334455555555554443
No 440
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.81 E-value=6.1e+02 Score=27.29 Aligned_cols=50 Identities=14% Similarity=-0.017 Sum_probs=36.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHH--HHHHHHCCChHHHHHHHHH
Q 011721 29 QLVEKDPSRAISLFWAAINAGD-----RVDSALKDM--AVVMKQLDRSEEAIEAIKS 78 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p-----~~~~Al~~L--A~vL~~~GrydEAie~lek 78 (479)
.+..++|..|...|..++...+ +....+..| |..+...-++++|.+.+++
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4567899999999999987532 122334444 4445778999999999985
No 441
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=34.79 E-value=4.1e+02 Score=27.60 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 70 EEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLK 113 (479)
Q Consensus 70 dEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~le 113 (479)
-+|+.+++.++...|.+.+.. +.|..+|..+|-...|...|.
T Consensus 200 ~~Ai~lLE~~l~~s~~n~~~~--LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 200 LQAIALLEHALKKSPHNYQLK--LLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHH--HHHHHHHHHcCCHHHHHHHHH
Confidence 345555566666666655433 234456666666666666664
No 442
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=34.71 E-value=2.6e+02 Score=26.16 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHH-HHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAV-VMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~-vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
++...-+..|.+. +- .+-|.++|. ++..+|+-|+=.+.+..+.+-+..++ .+...++.+|.+.|+..+|-+.
T Consensus 70 ~NlKrVi~C~~~~---n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p--~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 70 GNLKRVIECYAKR---NK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINP--EFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp S-THHHHHHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-H--HHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHh---cc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCH--HHHHHHHHHHHHhcchhhHHHH
Confidence 4556666666432 11 123556664 46677887777777777765332333 3344567889999999999999
Q ss_pred HHHHHHh
Q 011721 112 LKRKLKK 118 (479)
Q Consensus 112 lekALkl 118 (479)
+.+|-+-
T Consensus 143 l~~ACek 149 (161)
T PF09205_consen 143 LKEACEK 149 (161)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999874
No 443
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=34.67 E-value=72 Score=25.75 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHHHHh
Q 011721 102 SKRIEEEIELLKRKLKK 118 (479)
Q Consensus 102 lGr~deAie~lekALkl 118 (479)
.|++++|+.+|.+++..
T Consensus 19 ~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 19 AGNYEEALRLYQHALEY 35 (75)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 35555555555555544
No 444
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.59 E-value=2.6e+02 Score=32.12 Aligned_cols=68 Identities=12% Similarity=-0.042 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
.+.++||.+.++... .+ .+..+.|+++.|.++..++ + + .. -...|+++....|++..|.++|.+|-.+
T Consensus 628 g~~e~AL~~s~D~d~-rF---elal~lgrl~iA~~la~e~---~--s-~~-Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 628 GMKEQALELSTDPDQ-RF---ELALKLGRLDIAFDLAVEA---N--S-EV-KWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred cchHhhhhcCCChhh-hh---hhhhhcCcHHHHHHHHHhh---c--c-hH-HHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 455566665444321 22 3457889999998866543 1 1 11 1234778889999999999999998776
No 445
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.31 E-value=2.2e+02 Score=28.19 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHH-HHHHHHH-cCCHHHHHHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKN-KQCN-LAICLIR-LNRIAEAKSLLQAV 208 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna-~a~n-LG~~L~~-lGr~dEAi~l~kAL 208 (479)
-+..++.++.+.|+|++.+.++++++..+|+-. .-.| |+.+|-. .|..-.++.....+
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 456789999999999999999999999988865 5567 8888844 47777777744443
No 446
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=33.39 E-value=14 Score=41.07 Aligned_cols=125 Identities=21% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCHHHHHHHH-HHHHHcCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHH--HhcCCChHHHHHHHHHHHHHHcCCHHHH
Q 011721 33 KDPSRAISLF-WAAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFR--CLCADDSQESLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 33 gd~eeAi~~y-~kAL~l~p-~~~~Al~~LA~vL~~~GrydEAie~lekal--~l~P~da~~~l~~aLg~lY~klGr~deA 108 (479)
+++..+...| .+|=...+ .-...++.-+..+.+.|+++.|..++.++- .+.|.. ...+.+..+.++...|++++|
T Consensus 2 ~~~~~aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q-~~~~~Ll~A~lal~~~~~~~A 80 (536)
T PF04348_consen 2 GDPRQAAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ-QARYQLLRARLALAQGDPEQA 80 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH-HHHHHHHHHHHHHhcCCHHHH
Confidence 3444444444 44433333 333445566788999999999999988765 344433 223344456888889999999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
+..+.. +.. ..+. ......++..++.+|..+|++-+|...+-..-.+-++
T Consensus 81 l~~L~~-~~~--~~l~--------------------~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d 130 (536)
T PF04348_consen 81 LSLLNA-QDL--WQLP--------------------PEQQARYHQLRAQAYEQQGDPLAAARERIALDPLLPD 130 (536)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHhcc-CCc--ccCC--------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCC
Confidence 888864 111 1000 0011236677889999999998888887776666554
No 447
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.95 E-value=1.3e+02 Score=33.04 Aligned_cols=115 Identities=18% Similarity=0.038 Sum_probs=61.5
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHh----cCC-----ChHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhchhHHh
Q 011721 57 KDMAVVMKQLDRSEEAIEAIKSFRCL----CAD-----DSQESLDNVLLELYKRSKRI---EEEIELLKRKLKKTEEVIA 124 (479)
Q Consensus 57 ~~LA~vL~~~GrydEAie~lekal~l----~P~-----da~~~l~~aLg~lY~klGr~---deAie~lekALkl~p~~la 124 (479)
+..|.+......|++|+.++..+=+. +|. |..+.+++-+..||+.+.+. ++|..-+.++-+-+...
T Consensus 167 hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s-- 244 (568)
T KOG2561|consen 167 HEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS-- 244 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh--
Confidence 34566778888899999877553222 221 11222333344677776654 45555554444332211
Q ss_pred cCCCchHHHHhhchhHHHhhhhhHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 125 CGGKSTKIARSQGRKTQITLVQELS---RISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 125 ~~~k~~~~A~~~g~k~~l~L~pe~~---~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
+|......+.. +-.-.|+-+ +.+..-|.+.+.+|+-++|.++++.|...
T Consensus 245 -yGenl~Rl~~l----Kg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 245 -YGENLSRLRSL----KGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred -hhhhhHhhhhc----cCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11000000000 000012222 34556699999999999999999988763
No 448
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=31.82 E-value=83 Score=25.66 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=9.7
Q ss_pred cCCHHHHHHHHHHHHHh
Q 011721 102 SKRIEEEIELLKRKLKK 118 (479)
Q Consensus 102 lGr~deAie~lekALkl 118 (479)
.|++++|+.+|..+|..
T Consensus 19 ~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 19 RGDAAAALSLYCSALQY 35 (75)
T ss_pred hccHHHHHHHHHHHHHH
Confidence 35555566665555554
No 449
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=31.68 E-value=3.5e+02 Score=23.56 Aligned_cols=50 Identities=28% Similarity=0.372 Sum_probs=33.5
Q ss_pred HHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 61 VVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLK 113 (479)
Q Consensus 61 ~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~le 113 (479)
..+.+.+...+.+.+++.++..++.++ .+.+.++.+|.+. +..+.++++.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~--~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENP--ALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccch--hHHHHHHHHHHHH-CHHHHHHHHH
Confidence 345567889999999999988876443 3455666777654 3344555554
No 450
>PF07491 PPI_Ypi1: Protein phosphatase inhibitor ; InterPro: IPR011107 These proteins include Ypi1, a novel Saccharomyces cerevisiae type 1 protein phosphatase inhibitor [] and ppp1r11/hcgv (O60927 from SWISSPROT), annotated as having protein phosphatase inhibitor activity [].
Probab=31.59 E-value=17 Score=28.86 Aligned_cols=17 Identities=35% Similarity=0.788 Sum_probs=13.9
Q ss_pred chhhhhhhccccccCCc
Q 011721 385 NRAQRRERWREDTVSGS 401 (479)
Q Consensus 385 ~~~~~~~~~~~~~~~~~ 401 (479)
....|+++|.||||+.-
T Consensus 13 ~~~~~~V~W~edvVDNE 29 (60)
T PF07491_consen 13 PKSRRRVQWSEDVVDNE 29 (60)
T ss_pred cCCCCceeecCCceecc
Confidence 45679999999999854
No 451
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.57 E-value=3e+02 Score=30.95 Aligned_cols=137 Identities=16% Similarity=0.202 Sum_probs=83.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH--------HHHHCCCh--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAV--------VMKQLDRS--EEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~--------vL~~~Gry--dEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
..|+-+++...++.+-..- +.-.+...++. .+...+.+ +...+.+.......|+++-..+ .-+.++.
T Consensus 202 f~g~r~egl~~Lw~~a~~~-s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll--~~ar~l~ 278 (546)
T KOG3783|consen 202 FSGDRDEGLRLLWEAAKQR-NFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLL--MEARILS 278 (546)
T ss_pred hcccHHHHHHHHHHHHccC-cchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHH--HHHHHHH
Confidence 3466677777666654433 33333322222 22333333 4444556666778888764332 2346778
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
..|+.+.|+.+++..+...-+-. ..-.++-+|+++.-+.+|..|-.++.....+.-
T Consensus 279 ~~g~~eaa~~~~~~~v~~~~kQ~------------------------~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd 334 (546)
T KOG3783|consen 279 IKGNSEAAIDMESLSIPIRMKQV------------------------KSLMVFERAWLSVGQHQYSRAADSFDLLRDESD 334 (546)
T ss_pred HcccHHHHHHHHHhcccHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 88888899999998877211111 112678899999999999999999998887765
Q ss_pred CCHHHHH--HHHHHHH
Q 011721 181 DKNKQCN--LAICLIR 194 (479)
Q Consensus 181 dna~a~n--LG~~L~~ 194 (479)
=.-..|. .|-||+.
T Consensus 335 WS~a~Y~Yfa~cc~l~ 350 (546)
T KOG3783|consen 335 WSHAFYTYFAGCCLLQ 350 (546)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 4444443 4455543
No 452
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.86 E-value=3.3e+02 Score=28.93 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=9.3
Q ss_pred cCCHHHHHHHHHHHH
Q 011721 162 QNDYESAERYYMKAL 176 (479)
Q Consensus 162 lGdydeA~~~yrKAL 176 (479)
.++|++|..+|+.|+
T Consensus 23 a~nY~eA~~lY~~al 37 (439)
T KOG0739|consen 23 AKNYEEALRLYQNAL 37 (439)
T ss_pred hhchHHHHHHHHHHH
Confidence 456666666666655
No 453
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=30.59 E-value=2.3e+02 Score=24.33 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNR 197 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr 197 (479)
......|.+-+..|++..|++...++-+..+...-.+. -+.+-..+||
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 35577799999999999999999999777444444444 3444444443
No 454
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=30.15 E-value=3.4e+02 Score=30.76 Aligned_cols=89 Identities=18% Similarity=0.130 Sum_probs=49.9
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHHcC-----CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC-CccchH
Q 011721 150 RISGNLAWAYL--QQNDYESAERYYMKALSLE-----SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR-NEKMDE 219 (479)
Q Consensus 150 ~al~nLG~ay~--~lGdydeA~~~yrKALeLd-----Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~-n~~a~~ 219 (479)
-++.+||.+-- ....-..++..|.+|+... -.+.-.|. +|-+|.+.++|.+|+. .-+|-..-.. |-..++
T Consensus 278 mALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reD 357 (618)
T PF05053_consen 278 MALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSRED 357 (618)
T ss_dssp HHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGG
T ss_pred hhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccH
Confidence 45556655533 2233455677777777652 22223466 9999999999999999 6665433222 211222
Q ss_pred --HHHHHHHHHHHHHHHHHhh
Q 011721 220 --SYAKSFEHASLMLTELESQ 238 (479)
Q Consensus 220 --~~~k~~~rA~eaL~el~~a 238 (479)
.+...++=|-+++..+.+.
T Consensus 358 eEiYKEfleIAneLiP~~lk~ 378 (618)
T PF05053_consen 358 EEIYKEFLEIANELIPNVLKS 378 (618)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 4555567777777776654
No 455
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=29.98 E-value=90 Score=26.01 Aligned_cols=24 Identities=29% Similarity=0.080 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 153 GNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.+.|.-+-..|+.++|+.+|++++
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHH
Confidence 344444445555555555555544
No 456
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=29.78 E-value=8.3e+02 Score=27.35 Aligned_cols=164 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 011721 41 LFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTE 120 (479)
Q Consensus 41 ~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p 120 (479)
.|.+++..-+-.++.++....-+...++-+.|+...++....+|. +..-+...|...++-+.-..+|++.+..-.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-----L~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-----LTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-----hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Q ss_pred hHHhcCC---------------------------------------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH
Q 011721 121 EVIACGG---------------------------------------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ 161 (479)
Q Consensus 121 ~~la~~~---------------------------------------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~ 161 (479)
.-..... .....|+..+.+....--....-...+.=.-|..
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~ 444 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA 444 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 162 QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 162 lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
+|++.-|-..|+-.+.-.||.+...+ .-..++..++-+.|.. +.+++.
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
No 457
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.47 E-value=7.2e+02 Score=28.08 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 153 GNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
+.++..|..+++|.+|+..|.+|.
T Consensus 426 ~~iA~sY~a~~K~~EAlALy~Ra~ 449 (593)
T KOG2460|consen 426 FYIAVSYQAKKKYSEALALYVRAY 449 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666664
No 458
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.33 E-value=7e+02 Score=26.33 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=89.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh---HHHHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGD--------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS---QESLD 92 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p--------~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da---~~~l~ 92 (479)
....-....+++++|+..|.+.+..+- ....+..+|+.+|...|++..--+........--+.. ...+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 344556778999999999999887532 1345678899999999998776655543322211110 01111
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 93 NVLLEL-YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 93 ~aLg~l-Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
..|.+- -.....++.-+..++..++-..+ ..+++ +.. ..-..+..+|++.|+|.+|+..
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~r--------------Ekr~f---Lr~---~Le~Kli~l~y~~~~Ysdalal 147 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADR--------------EKRKF---LRL---ELECKLIYLLYKTGKYSDALAL 147 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHH--------------HHHHH---HHH---HHHHHHHHHHHhcccHHHHHHH
Confidence 111100 00122334444444444332110 00000 000 1225567788999999999988
Q ss_pred HHHHHHc----CC--CCHHHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 172 YMKALSL----ES--DKNKQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 172 yrKALeL----dP--dna~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
.--.+.- +- .-...+. =..+|.+..+..++.. +..|
T Consensus 148 In~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 148 INPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 7665542 21 1123344 5778889888888888 5544
No 459
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.30 E-value=1.1e+03 Score=28.41 Aligned_cols=16 Identities=44% Similarity=0.324 Sum_probs=9.9
Q ss_pred HHHHHHHcCCHHHHHH
Q 011721 188 LAICLIRLNRIAEAKS 203 (479)
Q Consensus 188 LG~~L~~lGr~dEAi~ 203 (479)
.+.++.++|+.++|+.
T Consensus 690 ~aill~rl~khe~aL~ 705 (877)
T KOG2063|consen 690 RAILLGRLGKHEEALH 705 (877)
T ss_pred HHHHHhhhhhHHHHHH
Confidence 5566666666666666
No 460
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=28.77 E-value=3.4e+02 Score=25.19 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCcH--------------------------------HHHHHHHHHH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAIN-------AGDRVD--------------------------------SALKDMAVVM 63 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~-------l~p~~~--------------------------------~Al~~LA~vL 63 (479)
+......+..|++++|..++.+|.. .+|.+. .+....+.-+
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Q ss_pred HHCCChHHHHHHHHHH------------HHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 64 KQLDRSEEAIEAIKSF------------RCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 64 ~~~GrydEAie~leka------------l~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALk 117 (479)
.+.|+...|.+.++-+ +...|. ....+.-+...|++.+|...+..|+.
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~------av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPA------AVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHH------HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHH------HHHHHHHHHHCCCHHHHHHHHHHHhc
No 461
>PRK09687 putative lyase; Provisional
Probab=28.68 E-value=6.3e+02 Score=25.57 Aligned_cols=96 Identities=11% Similarity=-0.006 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHH--HHHcCC----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-----hHHHHHHHHHHHHhcCC
Q 011721 17 AGDSPYVRAKRA--QLVEKD----PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDR-----SEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 17 ~~~~pyv~a~~~--~L~~gd----~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr-----ydEAie~lekal~l~P~ 85 (479)
...++.++..-+ .-.-|+ ..+++..+...+..+++ .......+.++...+. ..++++.+..++. ++
T Consensus 64 ~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d-~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-D~- 140 (280)
T PRK09687 64 SSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS-ACVRASAINATGHRCKKNPLYSPKIVEQSQITAF-DK- 140 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC-HHHHHHHHHHHhcccccccccchHHHHHHHHHhh-CC-
Confidence 344566654322 222333 47888888776554444 3233333333332221 1334444433322 22
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
+.... ...+..+...|+ .+|+..+..++.-
T Consensus 141 ~~~VR--~~a~~aLg~~~~-~~ai~~L~~~L~d 170 (280)
T PRK09687 141 STNVR--FAVAFALSVIND-EAAIPLLINLLKD 170 (280)
T ss_pred CHHHH--HHHHHHHhccCC-HHHHHHHHHHhcC
Confidence 33222 222334445554 6788888888863
No 462
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=28.66 E-value=81 Score=25.72 Aligned_cols=26 Identities=27% Similarity=0.070 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
+...|.-.-..|+|++|+.+|..+|+
T Consensus 9 lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 9 LVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455666777788888877777764
No 463
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=28.56 E-value=6e+02 Score=30.13 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 011721 39 ISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK-RSKRIEEEIELLKRKLK 117 (479)
Q Consensus 39 i~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~-klGr~deAie~lekALk 117 (479)
+.-+..-+.+++.....+..|-.++...|++++-...=.++..+.|..+..++......+++ ..+...++...|++||.
T Consensus 99 i~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 99 IRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 33333444455555566778888899999999988888888889998877666554333333 34677888888999987
Q ss_pred hc
Q 011721 118 KT 119 (479)
Q Consensus 118 l~ 119 (479)
-+
T Consensus 179 dy 180 (881)
T KOG0128|consen 179 DY 180 (881)
T ss_pred cc
Confidence 54
No 464
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.32 E-value=4.2e+02 Score=23.50 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=40.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKL 116 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekAL 116 (479)
+..+=..|... .+++.++|.-+....-....+.+....+.++...|++.+|.+.|+.+|
T Consensus 68 ylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 68 YLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 33343444443 338899998877765544444556667788999999999999999875
No 465
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=28.14 E-value=4.9e+02 Score=28.41 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=21.0
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
..|.-+...|+|.+|+..|+.++..-|
T Consensus 209 k~gyk~~t~gKF~eA~~~Fr~iL~~i~ 235 (422)
T PF06957_consen 209 KEGYKLFTAGKFEEAIEIFRSILHSIP 235 (422)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 467778899999999999998776543
No 466
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=27.50 E-value=20 Score=39.82 Aligned_cols=97 Identities=13% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHH-HHhcCCChHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAIN--AGDR-VDSALKDMAVVMKQLDRSEEAIEAIKSF-RCLCADDSQESLDNVLL 96 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~--l~p~-~~~Al~~LA~vL~~~GrydEAie~leka-l~l~P~da~~~l~~aLg 96 (479)
-.+.+..+++.+|+++.|...+...-. +.+. ........|.+...+|++++|+..+... ...-|......+....+
T Consensus 26 ~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A 105 (536)
T PF04348_consen 26 LLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRA 105 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHH
Confidence 344566788999999999988876542 3332 2344556788899999999999998741 11122222334444456
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALk 117 (479)
.+|...|++-+|...+-+.-.
T Consensus 106 ~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 106 QAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp ---------------------
T ss_pred HHHHhcCCHHHHHHHHHHHhh
Confidence 788888887777766554433
No 467
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=27.18 E-value=79 Score=25.89 Aligned_cols=15 Identities=20% Similarity=-0.013 Sum_probs=8.9
Q ss_pred CCChHHHHHHHHHHH
Q 011721 66 LDRSEEAIEAIKSFR 80 (479)
Q Consensus 66 ~GrydEAie~lekal 80 (479)
.|+|++|..+|..++
T Consensus 19 ~~~y~eA~~~Y~~~i 33 (75)
T cd02677 19 EGDYEAAFEFYRAGV 33 (75)
T ss_pred HhhHHHHHHHHHHHH
Confidence 366666666665544
No 468
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.76 E-value=1.2e+02 Score=26.87 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
-++-.||.+|...|+-+.|.+.|+.--.+-|...
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 3444455555555555555555544444444443
No 469
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=26.36 E-value=8.4e+02 Score=26.25 Aligned_cols=167 Identities=16% Similarity=0.213 Sum_probs=98.1
Q ss_pred HHHHHHHHCCChHHHHHHHHHH----HHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSF----RCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~leka----l~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.|..+|.+.++|.+|+.....+ .+++....-..+...-..+|..+.+..+|...+.-|-......-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY---------- 202 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY---------- 202 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc----------
Confidence 4778899999999999876553 34444322111122223667778888888777765544311000
Q ss_pred HhhchhHHHhhhhhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHH----HHHHHHHcCCHHHHHHHH
Q 011721 134 RSQGRKTQITLVQELSRIS-GNLAWAYLQQNDYESAERYYMKALSLE---SDKNKQCN----LAICLIRLNRIAEAKSLL 205 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al-~nLG~ay~~lGdydeA~~~yrKALeLd---Pdna~a~n----LG~~L~~lGr~dEAi~l~ 205 (479)
..|.--..+ ..-|.++..-.+|.-|..||=.|++-- -++..++. +-.|-.-++..++-..+.
T Consensus 203 ----------cpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 203 ----------CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred ----------cCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 001111122 333777778899999999999999842 12233432 444555667777777733
Q ss_pred H---HHHhcCCCccc----hHHH-HHHHHHHHHHHHHHHhhhhcCCC
Q 011721 206 Q---AVRASSRNEKM----DESY-AKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 206 k---AL~l~P~n~~a----~~~~-~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
. +++.+..+..+ .+.+ -.++.....+|+++...+..+|.
T Consensus 273 s~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 273 SAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred hhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 2 34433333222 1122 24566777888899999888886
No 470
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=25.17 E-value=1e+03 Score=26.87 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=23.5
Q ss_pred HHHHHHHHHHH---HHcCCCCHHHHHHHHHHHH-cCCHHHHHH-HHHHH
Q 011721 165 YESAERYYMKA---LSLESDKNKQCNLAICLIR-LNRIAEAKS-LLQAV 208 (479)
Q Consensus 165 ydeA~~~yrKA---LeLdPdna~a~nLG~~L~~-lGr~dEAi~-l~kAL 208 (479)
+..+...++-. +.+.|.++....++.|+++ .++++.-.+ +..++
T Consensus 391 ~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l 439 (547)
T PF14929_consen 391 DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSAL 439 (547)
T ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHH
Confidence 44555555522 3344555554457888877 566663344 44443
No 471
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.62 E-value=6.8e+02 Score=26.69 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHH
Q 011721 89 ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESA 168 (479)
Q Consensus 89 ~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA 168 (479)
.....-|+.+|.+-+++..|-..+. +..-.....+...+.+.. .+..+|.+|+..++..+|
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~----------~I~~~tg~~~~d~~~kl~---------l~iriarlyLe~~d~vea 163 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLV----------GIPLDTGQKAYDVEQKLL---------LCIRIARLYLEDDDKVEA 163 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHh----------ccCcccchhhhhhHHHHH---------HHHHHHHHHHhcCcHHHH
Q ss_pred HHHHHHHHHc-----CCCCHHHHH--HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 169 ERYYMKALSL-----ESDKNKQCN--LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 169 ~~~yrKALeL-----dPdna~a~n--LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
+.+.-++--+ +++-...|- .|.++-..++|=||.. |.+-..
T Consensus 164 e~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 164 EAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=24.60 E-value=1.2e+02 Score=27.87 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLD 92 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~ 92 (479)
.+++.++-..++..-+.+.|..+|+.+++.+|++..+++.
T Consensus 76 ~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla 115 (139)
T PF12583_consen 76 SEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLA 115 (139)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHH
Confidence 4556666677777788899999999999999998765543
No 473
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.42 E-value=1.1e+03 Score=27.02 Aligned_cols=131 Identities=21% Similarity=0.165 Sum_probs=72.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHH-----cCCC----------------cHH---HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 011721 27 RAQLVEKDPSRAISLFWAAIN-----AGDR----------------VDS---ALKDMAVVMKQLDRSEEAIEAIKSFRCL 82 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~-----l~p~----------------~~~---Al~~LA~vL~~~GrydEAie~lekal~l 82 (479)
++...+||.+.|..+..++|= ..|. +-. +++..-..+.+.|-+.-|.+.++-++.+
T Consensus 292 ~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL 371 (665)
T KOG2422|consen 292 DIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL 371 (665)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 444566887777666666552 1221 111 2223334567899999999999999999
Q ss_pred cCC-ChHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 83 CAD-DSQESLDNVLLELYK-RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 83 ~P~-da~~~l~~aLg~lY~-klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
+|. |+...+. ++++|. +..+|.=-|..++..-..+. +..-|+.. +-.-|+..|.
T Consensus 372 dp~eDPl~~l~--~ID~~ALrareYqwiI~~~~~~e~~n~---------------------l~~~PN~~-yS~AlA~f~l 427 (665)
T KOG2422|consen 372 DPSEDPLGILY--LIDIYALRAREYQWIIELSNEPENMNK---------------------LSQLPNFG-YSLALARFFL 427 (665)
T ss_pred CCcCCchhHHH--HHHHHHHHHHhHHHHHHHHHHHHhhcc---------------------HhhcCCch-HHHHHHHHHH
Confidence 998 6643322 223332 33334333333332211100 11112211 1133444555
Q ss_pred HcCC---HHHHHHHHHHHHHcCCC
Q 011721 161 QQND---YESAERYYMKALSLESD 181 (479)
Q Consensus 161 ~lGd---ydeA~~~yrKALeLdPd 181 (479)
.... -..|+..+.+|+...|.
T Consensus 428 ~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCChhhHHHHHHHHHHHHHhCcH
Confidence 5544 67899999999999884
No 474
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.28 E-value=4.1e+02 Score=28.51 Aligned_cols=105 Identities=13% Similarity=0.016 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCChHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHH----HhhhhhH-
Q 011721 75 AIKSFRCLCADDSQES-LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQ----ITLVQEL- 148 (479)
Q Consensus 75 ~lekal~l~P~da~~~-l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~----l~L~pe~- 148 (479)
.|++..++-|+..... .++--|.+|...|+|.+....|.-|-..+.............|...|...- .+.++..
T Consensus 43 ~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~Y 122 (449)
T COG3014 43 AYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIY 122 (449)
T ss_pred HHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhH
Confidence 3444444445433222 222235678888888888877766554433211100000000110000000 0111111
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 149 --SRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 149 --~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
.-+...+|.-|+...+++.|.-.|.+|....
T Consensus 123 E~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 123 EGVLINYYKALNYMLLNDSAKARVEFNRANERQ 155 (449)
T ss_pred HHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHH
Confidence 1345677899999999999999999987643
No 475
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=23.93 E-value=1.3e+02 Score=24.60 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
...|.-.-..|+|++|..+|..+|+
T Consensus 10 ~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 10 IRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445555566777777777766653
No 476
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=23.53 E-value=1.5e+02 Score=26.60 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
..+|..+...|++++|..+|-+||.+-|+-.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 5678888888888888888888888877644
No 477
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=23.22 E-value=3.3e+02 Score=23.42 Aligned_cols=28 Identities=7% Similarity=-0.054 Sum_probs=19.2
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 57 KDMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 57 ~~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
..-|.+-...|++..|.+.+.++.+..+
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~ 90 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSD 90 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3456667777888888888877755533
No 478
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=23.15 E-value=1.2e+02 Score=27.31 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=23.3
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+|..+...|++++|..+|-+|+..+|.-
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 47888888899999999888888888863
No 479
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.67 E-value=2.5e+02 Score=32.78 Aligned_cols=97 Identities=16% Similarity=0.060 Sum_probs=67.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL--QQNDYESAERYYMKA 175 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~--~lGdydeA~~~yrKA 175 (479)
.....+++.+|.--|..++.+.|.... +......+.+.+|+ .+|+|.+++.--.-|
T Consensus 62 ~~~~K~d~~~~~~~~~~~~~llp~~~~----------------------~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la 119 (748)
T KOG4151|consen 62 KLFQKRDYEGAMFRYDCAIKLLPKDHH----------------------VVATLRSNQASCYMQLGLGEYPKAIPECELA 119 (748)
T ss_pred HHhhhhhhhccchhhhhhheeccccch----------------------hhhhHHHHHHHHHhhcCccchhhhcCchhhh
Confidence 344555666666666666666553211 11123445554444 567999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+...|....+++ -+.+|..+++++-|++ +.-....+|.+..
T Consensus 120 ~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 120 LESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred hhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 999999988888 8999999999999998 6666778888754
No 480
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=22.64 E-value=2.8e+02 Score=29.68 Aligned_cols=88 Identities=15% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELL 112 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~l 112 (479)
-|+..-..+|.......|.-. .-.|.++++....-.+.++...+.+...---+....+.-.-++++.++|+.++|...|
T Consensus 310 tDW~~I~aLYdaL~~~apSPv-V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ay 388 (415)
T COG4941 310 TDWPAIDALYDALEQAAPSPV-VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAY 388 (415)
T ss_pred CChHHHHHHHHHHHHhCCCCe-EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHH
Confidence 466666666766555555432 3346677777666677777776655443111222333444578999999999999999
Q ss_pred HHHHHhchh
Q 011721 113 KRKLKKTEE 121 (479)
Q Consensus 113 ekALkl~p~ 121 (479)
++|+.+.++
T Consensus 389 drAi~La~~ 397 (415)
T COG4941 389 DRAIALARN 397 (415)
T ss_pred HHHHHhcCC
Confidence 999998543
No 481
>PRK11619 lytic murein transglycosylase; Provisional
Probab=22.51 E-value=1.2e+03 Score=26.73 Aligned_cols=161 Identities=10% Similarity=0.031 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 35 PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lek 114 (479)
..+|..++..+.....+ ...+.-...+....++.+.+...+..+-..... .....+.+|..+..+|+.++|...|++
T Consensus 295 ~~~a~~w~~~~~~~~~~-~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~--~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQS-TSLLERRVRMALGTGDRRGLNTWLARLPMEAKE--KDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhcccccCC-cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc--CHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55677777665543111 112222222334677777776666653221111 123345567777778888888888888
Q ss_pred HHHhchhHHhcCCCchHHH-HhhchhHHHhh--hhhH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 011721 115 KLKKTEEVIACGGKSTKIA-RSQGRKTQITL--VQEL-----SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186 (479)
Q Consensus 115 ALkl~p~~la~~~k~~~~A-~~~g~k~~l~L--~pe~-----~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~ 186 (479)
+... .. +++ ..| ..+|....+.. .|.. ..-....+..+..+|....|......++.. .+.....
T Consensus 372 ~a~~-~~---fYG---~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~ 443 (644)
T PRK11619 372 LMQQ-RG---FYP---MVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQA 443 (644)
T ss_pred HhcC-CC---cHH---HHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHH
Confidence 7542 11 100 000 00110000000 0000 012355677888999999999999998885 3333344
Q ss_pred HHHHHHHHcCCHHHHHH-HHH
Q 011721 187 NLAICLIRLNRIAEAKS-LLQ 206 (479)
Q Consensus 187 nLG~~L~~lGr~dEAi~-l~k 206 (479)
.++.+-...|.++-|+. ..+
T Consensus 444 ~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 444 QLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHhh
Confidence 48888889999999988 443
No 482
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=22.33 E-value=5.5e+02 Score=22.74 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=30.3
Q ss_pred HHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 011721 37 RAISLFWAAIN--AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 80 (479)
Q Consensus 37 eAi~~y~kAL~--l~p~~~~Al~~LA~vL~~~GrydEAie~lekal 80 (479)
.+...|..... ++-+.+.-|...|.++...|++++|.++|+..+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 45555554443 566677777788888888888888888887643
No 483
>PRK12798 chemotaxis protein; Reviewed
Probab=22.26 E-value=1e+03 Score=25.94 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=27.1
Q ss_pred HHHHHHc-CCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 172 YMKALSL-ESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 172 yrKALeL-dPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+...|.. +|+.- ..|. ++..-.-.|+.+-|.- ..+++.+...
T Consensus 244 l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~ 289 (421)
T PRK12798 244 LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADP 289 (421)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC
Confidence 4444443 55544 4455 7777777888888888 7777776633
No 484
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.93 E-value=1.8e+02 Score=25.83 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCCHHHHH--HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 169 ERYYMKALSLESDKNKQCN--LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 169 ~~~yrKALeLdPdna~a~n--LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++.++++-.-+-.-+..++ ||.+|...|+-+.|.. +..--.+.|+.+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 4555666555544444443 9999999999999999 8888889998754
No 485
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=20.65 E-value=5.5e+02 Score=22.90 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLC--------------ADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTE 120 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~--------------P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p 120 (479)
+.++-..+...|+.+....+++..-.++ |-.|...+..+++..|...|++..|+.+.....+.++
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 3344455566666666666666544333 1223445556666778888888888888888888776
No 486
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=20.48 E-value=3.6e+02 Score=27.89 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALk 117 (479)
+..+...|.+++|+..++..+...+..-+ .+..+.++.++...|+++-|...|+...+
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Done!