Query 011721
Match_columns 479
No_of_seqs 344 out of 1874
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.9 7E-23 2.4E-27 191.7 22.4 174 15-217 1-187 (217)
2 3vtx_A MAMA; tetratricopeptide 99.9 1.4E-22 4.7E-27 181.4 21.7 170 18-215 4-175 (184)
3 4eqf_A PEX5-related protein; a 99.9 2.3E-21 8E-26 190.8 25.1 222 21-245 67-314 (365)
4 1w3b_A UDP-N-acetylglucosamine 99.9 3.9E-21 1.3E-25 191.2 25.8 202 12-216 60-272 (388)
5 1w3b_A UDP-N-acetylglucosamine 99.9 4.9E-21 1.7E-25 190.5 25.3 238 7-247 89-340 (388)
6 2pl2_A Hypothetical conserved 99.9 2.3E-21 8E-26 181.3 18.9 173 6-207 26-211 (217)
7 3uq3_A Heat shock protein STI1 99.9 2.3E-20 7.9E-25 172.0 24.3 220 21-242 7-237 (258)
8 1fch_A Peroxisomal targeting s 99.9 2.7E-20 9.2E-25 181.8 26.1 222 21-245 66-318 (368)
9 4i17_A Hypothetical protein; T 99.9 1.4E-20 4.8E-25 174.4 21.9 204 19-247 7-215 (228)
10 4gyw_A UDP-N-acetylglucosamine 99.9 2.2E-21 7.7E-26 215.7 19.5 172 15-214 5-178 (723)
11 3hym_B Cell division cycle pro 99.9 7.4E-20 2.5E-24 174.7 27.3 238 7-247 44-305 (330)
12 2y4t_A DNAJ homolog subfamily 99.9 4E-20 1.4E-24 185.9 24.5 238 7-247 14-292 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1.6E-19 5.4E-24 173.6 26.2 224 21-247 5-269 (359)
14 2h6f_A Protein farnesyltransfe 99.9 7.7E-21 2.6E-25 196.0 17.6 196 20-247 98-310 (382)
15 4eqf_A PEX5-related protein; a 99.8 1.2E-20 4.2E-25 185.6 17.2 209 6-215 86-315 (365)
16 2vq2_A PILW, putative fimbrial 99.8 2.9E-19 9.9E-24 161.3 24.2 207 15-247 4-217 (225)
17 2q7f_A YRRB protein; TPR, prot 99.8 3.6E-19 1.2E-23 163.3 23.3 199 21-247 25-228 (243)
18 3hym_B Cell division cycle pro 99.8 8.5E-19 2.9E-23 167.4 26.5 238 7-247 10-271 (330)
19 2h6f_A Protein farnesyltransfe 99.8 8.2E-20 2.8E-24 188.4 20.6 212 6-246 118-353 (382)
20 2q7f_A YRRB protein; TPR, prot 99.8 1.4E-19 4.9E-24 166.0 19.7 182 7-216 45-228 (243)
21 3ieg_A DNAJ homolog subfamily 99.8 8E-19 2.8E-23 168.7 25.8 240 7-247 25-307 (359)
22 3cv0_A Peroxisome targeting si 99.8 8.2E-19 2.8E-23 167.3 25.6 221 21-244 23-272 (327)
23 1fch_A Peroxisomal targeting s 99.8 1.4E-19 4.6E-24 176.8 20.3 206 7-214 86-318 (368)
24 4abn_A Tetratricopeptide repea 99.8 7.5E-20 2.5E-24 191.9 19.7 178 11-217 94-294 (474)
25 3qky_A Outer membrane assembly 99.8 9.4E-19 3.2E-23 165.9 24.9 193 15-216 11-230 (261)
26 2ho1_A Type 4 fimbrial biogene 99.8 9.4E-19 3.2E-23 162.6 24.4 199 21-247 39-244 (252)
27 3mkr_A Coatomer subunit epsilo 99.8 7.6E-19 2.6E-23 172.9 24.6 186 26-219 72-273 (291)
28 2y4t_A DNAJ homolog subfamily 99.8 1.7E-18 5.7E-23 174.1 25.9 240 7-247 48-330 (450)
29 4gyw_A UDP-N-acetylglucosamine 99.8 1.6E-19 5.4E-24 200.8 17.7 142 48-217 4-147 (723)
30 3uq3_A Heat shock protein STI1 99.8 1.4E-18 4.8E-23 160.0 20.8 192 8-211 28-237 (258)
31 3as5_A MAMA; tetratricopeptide 99.8 2.1E-18 7.2E-23 150.2 20.8 168 21-216 10-179 (186)
32 3urz_A Uncharacterized protein 99.8 3.2E-19 1.1E-23 165.7 16.2 166 21-214 6-190 (208)
33 2xpi_A Anaphase-promoting comp 99.8 6.1E-18 2.1E-22 176.6 27.7 236 9-247 329-585 (597)
34 3vtx_A MAMA; tetratricopeptide 99.8 2.1E-18 7E-23 154.2 20.1 166 52-245 4-174 (184)
35 2ho1_A Type 4 fimbrial biogene 99.8 5.5E-18 1.9E-22 157.4 23.3 182 7-216 59-244 (252)
36 3cv0_A Peroxisome targeting si 99.8 9.3E-19 3.2E-23 166.9 17.5 207 7-214 43-273 (327)
37 3u4t_A TPR repeat-containing p 99.8 3.3E-18 1.1E-22 160.4 19.9 224 22-247 6-256 (272)
38 3fp2_A TPR repeat-containing p 99.8 6.5E-18 2.2E-22 173.3 23.8 211 6-217 46-380 (537)
39 4i17_A Hypothetical protein; T 99.8 1.3E-17 4.3E-22 154.4 23.0 140 50-217 4-155 (228)
40 2xpi_A Anaphase-promoting comp 99.8 1E-17 3.5E-22 174.9 25.0 206 8-216 362-585 (597)
41 4ga2_A E3 SUMO-protein ligase 99.8 2E-19 6.8E-24 159.6 10.1 144 26-197 4-149 (150)
42 2pzi_A Probable serine/threoni 99.8 1.8E-18 6.2E-23 189.7 18.9 159 30-217 402-570 (681)
43 2vq2_A PILW, putative fimbrial 99.8 2.3E-17 7.7E-22 148.8 22.7 182 7-216 30-217 (225)
44 1qqe_A Vesicular transport pro 99.8 3.1E-18 1.1E-22 167.1 18.0 204 21-244 39-272 (292)
45 3fp2_A TPR repeat-containing p 99.8 2.8E-17 9.5E-22 168.6 25.1 211 8-247 225-463 (537)
46 3u4t_A TPR repeat-containing p 99.8 9.6E-18 3.3E-22 157.2 19.8 159 53-215 3-176 (272)
47 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.2E-17 1.4E-21 152.3 22.4 193 20-216 44-250 (275)
48 2gw1_A Mitochondrial precursor 99.8 8.9E-18 3.1E-22 170.6 17.2 225 20-248 238-485 (514)
49 4g1t_A Interferon-induced prot 99.8 1.1E-16 3.8E-21 162.5 25.0 228 19-247 51-335 (472)
50 3qky_A Outer membrane assembly 99.8 8.2E-17 2.8E-21 152.5 21.8 190 46-258 8-241 (261)
51 2gw1_A Mitochondrial precursor 99.8 6.7E-17 2.3E-21 164.1 22.2 206 7-216 259-484 (514)
52 4abn_A Tetratricopeptide repea 99.8 1.9E-17 6.4E-22 173.7 18.5 172 6-203 124-313 (474)
53 4gco_A Protein STI-1; structur 99.7 2.1E-17 7.2E-22 143.0 14.8 120 45-192 5-125 (126)
54 2r5s_A Uncharacterized protein 99.7 1.5E-17 5.2E-22 149.6 14.1 162 19-209 6-172 (176)
55 2yhc_A BAMD, UPF0169 lipoprote 99.7 3E-16 1E-20 146.8 22.9 187 21-216 6-219 (225)
56 4ga2_A E3 SUMO-protein ligase 99.7 2.6E-18 9E-23 152.3 8.3 131 58-216 2-135 (150)
57 2ond_A Cleavage stimulation fa 99.7 1.9E-16 6.5E-21 155.1 22.4 176 7-210 38-232 (308)
58 3mkr_A Coatomer subunit epsilo 99.7 1.9E-16 6.6E-21 155.7 22.4 215 25-247 40-270 (291)
59 2vsy_A XCC0866; transferase, g 99.7 5E-17 1.7E-21 172.3 19.2 157 32-216 2-163 (568)
60 3qou_A Protein YBBN; thioredox 99.7 4.3E-17 1.5E-21 159.3 17.0 167 15-209 113-283 (287)
61 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.9E-16 6.5E-21 147.8 20.0 158 31-216 17-179 (275)
62 3nf1_A KLC 1, kinesin light ch 99.7 1.4E-16 4.9E-21 150.6 17.9 174 21-212 29-226 (311)
63 3ulq_A Response regulator aspa 99.7 2.3E-16 7.8E-21 157.7 19.1 187 7-213 85-296 (383)
64 2pzi_A Probable serine/threoni 99.7 1E-16 3.6E-21 175.8 18.1 160 13-201 427-587 (681)
65 3gyz_A Chaperone protein IPGC; 99.7 3.2E-17 1.1E-21 147.9 10.7 126 40-235 23-150 (151)
66 3urz_A Uncharacterized protein 99.7 5.1E-16 1.8E-20 144.0 18.3 166 53-246 4-191 (208)
67 4g1t_A Interferon-induced prot 99.7 5.8E-16 2E-20 157.2 20.2 230 16-246 91-368 (472)
68 3nf1_A KLC 1, kinesin light ch 99.7 5.5E-16 1.9E-20 146.6 18.3 176 20-213 70-310 (311)
69 2ond_A Cleavage stimulation fa 99.7 1.2E-15 4.2E-20 149.3 21.1 204 7-247 86-298 (308)
70 3edt_B KLC 2, kinesin light ch 99.7 8.1E-16 2.8E-20 142.7 17.7 173 20-210 44-281 (283)
71 2vgx_A Chaperone SYCD; alterna 99.7 2.7E-16 9.3E-21 139.4 13.2 132 40-237 8-141 (148)
72 1ouv_A Conserved hypothetical 99.7 5.8E-15 2E-19 140.1 23.0 186 16-212 3-217 (273)
73 3q15_A PSP28, response regulat 99.7 2.2E-15 7.4E-20 150.9 19.8 171 24-214 106-294 (378)
74 3as5_A MAMA; tetratricopeptide 99.7 1.5E-15 5E-20 132.2 15.6 138 52-217 7-146 (186)
75 1ouv_A Conserved hypothetical 99.7 9.1E-15 3.1E-19 138.8 22.4 188 16-214 35-255 (273)
76 3edt_B KLC 2, kinesin light ch 99.7 1E-15 3.6E-20 142.0 15.3 165 30-212 12-200 (283)
77 2ifu_A Gamma-SNAP; membrane fu 99.7 1.4E-15 4.6E-20 149.4 16.7 174 21-216 38-229 (307)
78 3sf4_A G-protein-signaling mod 99.7 1.3E-15 4.5E-20 149.4 16.1 194 20-214 10-260 (406)
79 2xcb_A PCRH, regulatory protei 99.7 1.3E-15 4.5E-20 132.5 14.1 133 40-238 5-139 (142)
80 1qqe_A Vesicular transport pro 99.7 8E-16 2.8E-20 150.0 14.2 175 21-214 79-273 (292)
81 4a1s_A PINS, partner of inscut 99.7 1.5E-15 5.3E-20 151.0 16.2 194 20-214 49-296 (411)
82 4gco_A Protein STI-1; structur 99.6 1.3E-15 4.5E-20 131.7 13.4 110 79-216 5-116 (126)
83 1p5q_A FKBP52, FK506-binding p 99.6 2E-16 6.8E-21 158.7 8.7 151 32-208 126-292 (336)
84 2fo7_A Synthetic consensus TPR 99.6 1.3E-14 4.5E-19 119.0 18.1 132 54-213 2-135 (136)
85 3ro2_A PINS homolog, G-protein 99.6 3.1E-15 1.1E-19 141.3 16.1 193 22-214 8-256 (338)
86 3qou_A Protein YBBN; thioredox 99.6 5E-15 1.7E-19 144.7 17.5 139 49-215 113-253 (287)
87 3sf4_A G-protein-signaling mod 99.6 1.4E-14 4.6E-19 142.2 20.7 163 52-215 8-221 (406)
88 1hh8_A P67PHOX, NCF-2, neutrop 99.6 6.9E-15 2.4E-19 133.6 17.2 131 55-216 8-156 (213)
89 3u3w_A Transcriptional activat 99.6 1.6E-14 5.6E-19 140.0 20.6 168 26-212 82-268 (293)
90 4a1s_A PINS, partner of inscut 99.6 8.8E-15 3E-19 145.5 18.6 162 52-214 47-256 (411)
91 3ro2_A PINS homolog, G-protein 99.6 1.6E-14 5.4E-19 136.4 19.3 160 54-214 6-216 (338)
92 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.5E-14 5.2E-19 135.2 18.9 142 52-216 3-182 (225)
93 2qfc_A PLCR protein; TPR, HTH, 99.6 5.5E-14 1.9E-18 136.3 20.8 170 24-212 80-268 (293)
94 2e2e_A Formate-dependent nitri 99.6 2.5E-14 8.4E-19 127.3 16.6 66 151-216 80-150 (177)
95 2fo7_A Synthetic consensus TPR 99.6 6.9E-14 2.4E-18 114.7 17.9 133 22-182 4-136 (136)
96 2c2l_A CHIP, carboxy terminus 99.6 4.5E-15 1.5E-19 144.8 12.6 101 20-122 5-105 (281)
97 1hh8_A P67PHOX, NCF-2, neutrop 99.6 4.1E-14 1.4E-18 128.4 17.7 147 22-183 9-155 (213)
98 1a17_A Serine/threonine protei 99.6 8.4E-14 2.9E-18 120.3 18.0 130 53-210 13-146 (166)
99 3rjv_A Putative SEL1 repeat pr 99.6 2.3E-13 7.7E-18 126.9 21.9 164 17-212 16-199 (212)
100 3upv_A Heat shock protein STI1 99.6 4.5E-14 1.5E-18 119.0 15.4 115 52-194 3-124 (126)
101 2vsy_A XCC0866; transferase, g 99.6 3.3E-14 1.1E-18 150.7 18.0 154 8-189 12-169 (568)
102 2fbn_A 70 kDa peptidylprolyl i 99.6 4.4E-15 1.5E-19 135.4 9.4 147 31-203 16-177 (198)
103 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.8E-15 6.1E-20 158.3 6.7 145 33-203 248-406 (457)
104 2ooe_A Cleavage stimulation fa 99.6 7.8E-14 2.7E-18 146.3 19.3 183 7-216 260-460 (530)
105 3ulq_A Response regulator aspa 99.6 3.6E-14 1.2E-18 141.7 15.8 164 21-204 145-328 (383)
106 2vyi_A SGTA protein; chaperone 99.6 5.6E-14 1.9E-18 115.4 14.3 122 49-198 8-130 (131)
107 2lni_A Stress-induced-phosphop 99.6 6.1E-14 2.1E-18 116.5 14.3 121 49-197 12-133 (133)
108 2ifu_A Gamma-SNAP; membrane fu 99.6 3.7E-14 1.3E-18 139.1 15.2 193 32-246 4-228 (307)
109 1p5q_A FKBP52, FK506-binding p 99.6 4.5E-16 1.5E-20 156.1 1.0 170 33-217 79-266 (336)
110 4gcn_A Protein STI-1; structur 99.5 1.7E-13 5.9E-18 118.0 16.3 109 53-182 8-116 (127)
111 3sz7_A HSC70 cochaperone (SGT) 99.5 7.8E-14 2.7E-18 123.3 14.4 66 151-216 47-114 (164)
112 3gw4_A Uncharacterized protein 99.5 2.9E-13 9.9E-18 121.0 18.2 166 29-213 2-179 (203)
113 2r5s_A Uncharacterized protein 99.5 1.7E-14 5.9E-19 129.6 10.0 134 53-215 6-142 (176)
114 3gyz_A Chaperone protein IPGC; 99.5 3.7E-14 1.3E-18 127.8 11.9 111 11-183 28-138 (151)
115 3q15_A PSP28, response regulat 99.5 4.7E-13 1.6E-17 133.9 20.0 164 21-205 143-326 (378)
116 1hz4_A MALT regulatory protein 99.5 1.1E-12 3.6E-17 129.8 21.1 171 25-213 20-206 (373)
117 2c2l_A CHIP, carboxy terminus 99.5 5.6E-14 1.9E-18 137.0 10.9 106 50-183 1-106 (281)
118 2hr2_A Hypothetical protein; a 99.5 3.5E-13 1.2E-17 124.0 15.5 109 95-217 17-138 (159)
119 1na0_A Designed protein CTPR3; 99.5 1.4E-12 4.6E-17 106.2 17.3 116 53-196 9-125 (125)
120 2vgx_A Chaperone SYCD; alterna 99.5 1.2E-13 4E-18 122.4 11.6 115 8-184 10-124 (148)
121 1a17_A Serine/threonine protei 99.5 1E-12 3.5E-17 113.4 17.2 130 21-178 15-146 (166)
122 2xcb_A PCRH, regulatory protei 99.5 9.4E-14 3.2E-18 120.7 10.7 78 11-88 10-87 (142)
123 3sz7_A HSC70 cochaperone (SGT) 99.5 1.6E-12 5.5E-17 114.8 18.8 115 49-191 7-122 (164)
124 3q49_B STIP1 homology and U bo 99.5 3.4E-13 1.2E-17 113.9 13.8 103 49-213 5-109 (137)
125 4gcn_A Protein STI-1; structur 99.5 5E-13 1.7E-17 115.1 14.2 94 94-213 13-115 (127)
126 3upv_A Heat shock protein STI1 99.5 1.1E-12 3.7E-17 110.5 16.0 92 94-211 9-102 (126)
127 3rkv_A Putative peptidylprolyl 99.5 2.5E-13 8.6E-18 119.8 12.5 130 53-237 11-150 (162)
128 3gw4_A Uncharacterized protein 99.5 1.3E-12 4.4E-17 116.8 16.0 163 11-193 17-191 (203)
129 1elw_A TPR1-domain of HOP; HOP 99.5 2.9E-12 1E-16 103.4 16.7 112 53-192 4-116 (118)
130 3ro3_A PINS homolog, G-protein 99.5 2.9E-12 9.9E-17 108.3 16.8 141 53-213 9-161 (164)
131 3rkv_A Putative peptidylprolyl 99.5 1.9E-12 6.7E-17 114.1 16.3 111 94-246 16-131 (162)
132 1hxi_A PEX5, peroxisome target 99.4 4.9E-13 1.7E-17 114.4 11.2 96 94-215 22-119 (121)
133 3rjv_A Putative SEL1 repeat pr 99.4 2.4E-12 8.2E-17 120.0 16.6 145 36-216 3-163 (212)
134 1wao_1 Serine/threonine protei 99.4 2.6E-14 9E-19 150.7 3.5 134 54-215 7-155 (477)
135 1hxi_A PEX5, peroxisome target 99.4 7.6E-13 2.6E-17 113.2 12.0 101 56-184 20-120 (121)
136 1elr_A TPR2A-domain of HOP; HO 99.4 2.5E-12 8.6E-17 105.7 14.6 123 52-196 3-126 (131)
137 2fbn_A 70 kDa peptidylprolyl i 99.4 5E-13 1.7E-17 121.7 10.6 150 55-216 6-157 (198)
138 2dba_A Smooth muscle cell asso 99.4 2.7E-12 9.3E-17 108.6 14.3 119 48-192 23-143 (148)
139 2lni_A Stress-induced-phosphop 99.4 3.5E-12 1.2E-16 105.8 14.5 118 19-164 16-133 (133)
140 2hr2_A Hypothetical protein; a 99.4 6.4E-13 2.2E-17 122.2 10.6 119 54-191 12-145 (159)
141 3q49_B STIP1 homology and U bo 99.4 7.9E-12 2.7E-16 105.4 16.6 99 146-244 6-109 (137)
142 2xev_A YBGF; tetratricopeptide 99.4 5.5E-12 1.9E-16 105.3 15.4 110 55-187 4-114 (129)
143 3ro3_A PINS homolog, G-protein 99.4 3.4E-12 1.2E-16 107.8 14.2 141 21-181 11-161 (164)
144 3mv2_B Coatomer subunit epsilo 99.4 1.3E-11 4.4E-16 124.8 20.6 181 8-217 89-289 (310)
145 1hz4_A MALT regulatory protein 99.4 1.1E-11 3.6E-16 122.6 19.4 186 8-214 37-248 (373)
146 1dce_A Protein (RAB geranylger 99.4 4E-12 1.4E-16 137.5 17.1 155 34-216 44-227 (567)
147 2ooe_A Cleavage stimulation fa 99.4 8.5E-12 2.9E-16 130.8 19.1 181 8-215 309-497 (530)
148 2vyi_A SGTA protein; chaperone 99.4 1.1E-11 3.9E-16 101.5 15.8 117 21-165 14-130 (131)
149 2xm6_A Protein corresponding t 99.4 4.2E-11 1.4E-15 124.3 23.3 184 19-213 219-435 (490)
150 4f3v_A ESX-1 secretion system 99.4 3.3E-13 1.1E-17 134.7 7.1 180 7-213 28-240 (282)
151 3dra_A Protein farnesyltransfe 99.4 1.4E-11 4.9E-16 123.9 19.0 162 30-217 43-222 (306)
152 2qfc_A PLCR protein; TPR, HTH, 99.4 1.9E-11 6.3E-16 118.4 19.1 135 25-179 121-267 (293)
153 2kck_A TPR repeat; tetratricop 99.4 2.1E-12 7.3E-17 103.6 10.4 68 49-118 2-69 (112)
154 2if4_A ATFKBP42; FKBP-like, al 99.4 4.6E-13 1.6E-17 134.5 7.8 119 52-215 178-298 (338)
155 3k9i_A BH0479 protein; putativ 99.4 2.1E-12 7.1E-17 108.5 10.4 93 101-216 2-96 (117)
156 3dss_A Geranylgeranyl transfer 99.4 2.9E-11 9.8E-16 123.1 20.8 187 31-245 41-271 (331)
157 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 7.5E-13 2.6E-17 138.4 9.0 169 34-217 201-387 (457)
158 1ihg_A Cyclophilin 40; ppiase 99.4 3E-12 1E-16 130.8 12.8 117 54-216 224-342 (370)
159 3dra_A Protein farnesyltransfe 99.4 2.1E-11 7.2E-16 122.6 18.7 176 8-211 56-251 (306)
160 3dss_A Geranylgeranyl transfer 99.4 6E-11 2.1E-15 120.8 21.8 181 9-217 54-274 (331)
161 2xev_A YBGF; tetratricopeptide 99.4 2.7E-11 9.3E-16 101.0 15.8 99 95-216 8-111 (129)
162 3k9i_A BH0479 protein; putativ 99.3 1.9E-12 6.5E-17 108.7 8.2 102 32-195 3-108 (117)
163 4b4t_Q 26S proteasome regulato 99.3 2E-11 6.7E-16 122.4 16.6 173 21-213 6-207 (434)
164 4f3v_A ESX-1 secretion system 99.3 1.2E-12 4.2E-17 130.6 7.4 187 31-244 18-240 (282)
165 1elw_A TPR1-domain of HOP; HOP 99.3 3.1E-11 1.1E-15 97.3 13.9 98 93-216 8-107 (118)
166 2xm6_A Protein corresponding t 99.3 1.3E-10 4.4E-15 120.6 22.2 182 19-211 39-253 (490)
167 3u3w_A Transcriptional activat 99.3 3E-11 1E-15 117.0 16.3 135 25-179 121-267 (293)
168 1wao_1 Serine/threonine protei 99.3 2.2E-12 7.4E-17 136.0 8.5 128 27-182 14-154 (477)
169 1na0_A Designed protein CTPR3; 99.3 8.7E-11 3E-15 95.4 16.1 116 20-163 10-125 (125)
170 1zu2_A Mitochondrial import re 99.3 4.8E-12 1.6E-16 116.3 9.5 103 33-187 16-129 (158)
171 2e2e_A Formate-dependent nitri 99.3 4.8E-11 1.6E-15 105.9 15.4 129 30-186 21-152 (177)
172 2dba_A Smooth muscle cell asso 99.3 8E-11 2.7E-15 99.5 15.4 101 93-216 32-134 (148)
173 3e4b_A ALGK; tetratricopeptide 99.3 7.8E-11 2.7E-15 122.6 18.2 153 20-209 177-350 (452)
174 3q7a_A Farnesyltransferase alp 99.3 1.1E-10 3.8E-15 119.7 17.8 156 33-216 68-243 (349)
175 2if4_A ATFKBP42; FKBP-like, al 99.3 6.3E-12 2.1E-16 126.2 8.3 151 21-216 181-334 (338)
176 1elr_A TPR2A-domain of HOP; HO 99.3 7.7E-11 2.6E-15 96.7 13.2 95 93-213 8-111 (131)
177 2kck_A TPR repeat; tetratricop 99.3 5E-11 1.7E-15 95.4 11.8 70 16-85 3-72 (112)
178 1zu2_A Mitochondrial import re 99.3 1.5E-11 5.1E-16 113.0 9.7 91 100-216 13-126 (158)
179 3n71_A Histone lysine methyltr 99.2 1.8E-10 6.3E-15 122.7 18.3 134 58-209 314-463 (490)
180 1ihg_A Cyclophilin 40; ppiase 99.2 2.5E-10 8.5E-15 116.6 18.3 110 94-247 228-342 (370)
181 1dce_A Protein (RAB geranylger 99.2 8.6E-11 2.9E-15 127.1 13.8 178 8-213 52-270 (567)
182 2kat_A Uncharacterized protein 99.2 2.2E-10 7.5E-15 95.1 11.2 71 145-215 15-87 (115)
183 2l6j_A TPR repeat-containing p 99.1 1.7E-10 5.7E-15 93.5 8.5 53 151-203 40-99 (111)
184 3n71_A Histone lysine methyltr 99.1 9.5E-10 3.3E-14 117.2 16.8 133 29-179 319-465 (490)
185 2kat_A Uncharacterized protein 99.1 6.7E-10 2.3E-14 92.1 12.1 81 37-119 3-83 (115)
186 3e4b_A ALGK; tetratricopeptide 99.1 4E-09 1.4E-13 109.7 20.1 181 20-217 107-320 (452)
187 4b4t_Q 26S proteasome regulato 99.1 9.4E-10 3.2E-14 110.2 14.8 170 22-211 58-246 (434)
188 3ma5_A Tetratricopeptide repea 99.1 3.8E-10 1.3E-14 92.8 9.4 72 145-216 3-76 (100)
189 1na3_A Designed protein CTPR2; 99.1 1.8E-09 6.1E-14 84.4 12.1 46 151-196 45-91 (91)
190 3q7a_A Farnesyltransferase alp 99.0 5.6E-09 1.9E-13 107.1 17.3 163 8-198 77-258 (349)
191 1xi4_A Clathrin heavy chain; a 99.0 1.4E-08 4.9E-13 118.9 22.2 92 150-241 1222-1345(1630)
192 3mv2_B Coatomer subunit epsilo 99.0 9.2E-09 3.2E-13 103.9 18.0 184 38-247 85-288 (310)
193 1klx_A Cysteine rich protein B 98.9 1.3E-08 4.4E-13 89.1 13.9 112 32-179 8-127 (138)
194 2kc7_A BFR218_protein; tetratr 98.9 4.9E-09 1.7E-13 84.1 9.4 87 153-244 4-93 (99)
195 2l6j_A TPR repeat-containing p 98.9 1.5E-08 5E-13 81.8 12.1 67 149-215 4-72 (111)
196 1na3_A Designed protein CTPR2; 98.9 1.6E-08 5.6E-13 78.8 11.8 70 147-216 7-78 (91)
197 1xi4_A Clathrin heavy chain; a 98.9 4.6E-08 1.6E-12 114.7 20.4 139 51-208 1103-1248(1630)
198 1b89_A Protein (clathrin heavy 98.9 4.6E-10 1.6E-14 118.5 2.8 143 10-175 24-174 (449)
199 1klx_A Cysteine rich protein B 98.8 4.7E-08 1.6E-12 85.5 13.8 110 67-212 9-128 (138)
200 3qwp_A SET and MYND domain-con 98.8 5.6E-08 1.9E-12 101.7 16.2 118 60-195 294-426 (429)
201 2kc7_A BFR218_protein; tetratr 98.8 1.2E-08 4.1E-13 81.8 8.2 89 23-121 4-93 (99)
202 3qww_A SET and MYND domain-con 98.8 4.6E-08 1.6E-12 102.7 14.3 105 64-186 309-424 (433)
203 3ly7_A Transcriptional activat 98.8 9E-08 3.1E-12 98.8 15.4 65 149-214 277-343 (372)
204 3ma5_A Tetratricopeptide repea 98.7 2.5E-08 8.7E-13 81.7 7.4 71 49-121 3-73 (100)
205 3qww_A SET and MYND domain-con 98.7 3.3E-08 1.1E-12 103.8 10.2 93 101-211 310-412 (433)
206 3ly7_A Transcriptional activat 98.7 6.1E-07 2.1E-11 92.6 19.1 81 175-256 269-354 (372)
207 3u64_A Protein TP_0956; tetrat 98.6 1.2E-06 4.2E-11 87.7 18.8 172 34-238 102-298 (301)
208 3bee_A Putative YFRE protein; 98.6 1.8E-07 6E-12 77.7 10.0 72 145-216 2-78 (93)
209 3qwp_A SET and MYND domain-con 98.6 1.4E-07 4.7E-12 98.8 9.4 96 97-210 295-400 (429)
210 4e6h_A MRNA 3'-END-processing 98.5 3E-06 1E-10 93.7 20.2 175 36-213 326-536 (679)
211 1b89_A Protein (clathrin heavy 98.5 7.9E-08 2.7E-12 101.5 6.0 145 21-203 124-303 (449)
212 4e6h_A MRNA 3'-END-processing 98.4 9.3E-06 3.2E-10 89.8 20.3 146 70-217 326-506 (679)
213 2v5f_A Prolyl 4-hydroxylase su 98.3 3.9E-06 1.3E-10 69.8 10.3 77 94-189 10-87 (104)
214 1pc2_A Mitochondria fission pr 98.3 6.4E-06 2.2E-10 75.0 12.3 38 150-187 72-109 (152)
215 2v5f_A Prolyl 4-hydroxylase su 98.2 1.1E-05 3.9E-10 67.0 11.2 67 150-216 6-81 (104)
216 1pc2_A Mitochondria fission pr 98.2 1.1E-05 3.7E-10 73.6 10.9 84 146-240 29-119 (152)
217 3u64_A Protein TP_0956; tetrat 98.0 3.8E-05 1.3E-09 77.0 13.1 109 48-182 147-273 (301)
218 3bee_A Putative YFRE protein; 98.0 1.3E-05 4.5E-10 66.2 8.2 51 35-85 25-75 (93)
219 4g26_A Pentatricopeptide repea 97.9 0.00091 3.1E-08 71.0 21.1 155 25-209 32-202 (501)
220 2uy1_A Cleavage stimulation fa 97.7 0.0036 1.2E-07 66.1 21.1 55 35-90 195-249 (493)
221 1nzn_A CGI-135 protein, fissio 97.4 0.0022 7.4E-08 56.6 12.4 38 150-187 75-112 (126)
222 4g26_A Pentatricopeptide repea 97.3 0.0078 2.7E-07 63.8 18.7 162 55-246 28-211 (501)
223 1nzn_A CGI-135 protein, fissio 97.1 0.0028 9.7E-08 55.8 10.4 69 148-216 34-109 (126)
224 2uy1_A Cleavage stimulation fa 97.0 0.025 8.7E-07 59.6 18.9 165 8-207 202-380 (493)
225 3ffl_A Anaphase-promoting comp 96.7 0.016 5.5E-07 53.4 11.8 96 97-209 28-149 (167)
226 4gns_B Protein CSD3, chitin bi 96.5 0.036 1.2E-06 62.0 15.6 133 65-207 260-396 (754)
227 3o48_A Mitochondria fission 1 96.5 0.022 7.4E-07 50.7 10.9 69 148-216 39-113 (134)
228 4h7y_A Dual specificity protei 96.5 0.046 1.6E-06 49.8 13.1 54 161-214 72-127 (161)
229 1y8m_A FIS1; mitochondria, unk 96.4 0.031 1.1E-06 50.2 11.8 69 148-216 38-112 (144)
230 3ffl_A Anaphase-promoting comp 96.1 0.029 9.8E-07 51.7 9.9 93 22-114 23-147 (167)
231 4h7y_A Dual specificity protei 96.0 0.096 3.3E-06 47.7 12.8 53 145-197 90-142 (161)
232 3mkq_A Coatomer beta'-subunit; 95.9 0.19 6.6E-06 54.0 17.0 129 26-203 606-744 (814)
233 3o48_A Mitochondria fission 1 95.8 0.033 1.1E-06 49.5 8.5 38 150-187 79-116 (134)
234 1y8m_A FIS1; mitochondria, unk 95.4 0.23 7.9E-06 44.6 12.6 38 150-187 78-115 (144)
235 1ya0_A SMG-7 transcript varian 95.4 0.049 1.7E-06 58.1 9.6 67 150-216 153-221 (497)
236 2ff4_A Probable regulatory pro 94.2 0.65 2.2E-05 47.3 14.3 100 101-207 127-231 (388)
237 3txn_A 26S proteasome regulato 94.1 1.4 4.8E-05 45.5 16.6 171 22-212 22-212 (394)
238 2ff4_A Probable regulatory pro 93.9 0.9 3.1E-05 46.3 14.6 90 29-120 125-236 (388)
239 4b4t_P 26S proteasome regulato 93.6 3.1 0.0001 43.2 18.3 100 91-210 139-247 (445)
240 1zbp_A Hypothetical protein VP 93.6 0.51 1.7E-05 46.6 11.4 57 63-121 7-63 (273)
241 3mkq_A Coatomer beta'-subunit; 93.5 1.6 5.3E-05 46.8 16.2 106 63-206 662-773 (814)
242 3kae_A CDC27, possible protein 93.4 1.3 4.6E-05 41.3 13.2 135 30-187 13-152 (242)
243 3mkq_B Coatomer subunit alpha; 93.2 0.78 2.7E-05 42.4 11.5 67 27-108 13-79 (177)
244 3txn_A 26S proteasome regulato 92.4 1.4 4.7E-05 45.6 13.2 120 58-197 104-235 (394)
245 4gns_B Protein CSD3, chitin bi 92.3 1.8 6.2E-05 48.4 15.0 130 16-172 243-394 (754)
246 4b4t_R RPN7, 26S proteasome re 91.6 0.37 1.3E-05 49.8 8.0 107 54-180 132-239 (429)
247 2wpv_A GET4, UPF0363 protein Y 91.3 12 0.00042 37.2 18.4 160 28-208 22-195 (312)
248 3kae_A CDC27, possible protein 91.3 9.5 0.00032 35.7 18.0 89 27-121 41-146 (242)
249 1ya0_A SMG-7 transcript varian 90.6 1.2 3.9E-05 47.5 10.7 76 93-194 156-232 (497)
250 1zbp_A Hypothetical protein VP 88.9 3.3 0.00011 40.8 11.6 59 28-86 6-64 (273)
251 4b4t_S RPN3, 26S proteasome re 88.4 0.51 1.8E-05 50.6 5.9 132 30-182 147-303 (523)
252 3spa_A Mtrpol, DNA-directed RN 88.3 3.3 0.00011 48.0 12.7 60 55-117 129-193 (1134)
253 4b4t_R RPN7, 26S proteasome re 87.6 1.3 4.4E-05 45.8 8.2 96 93-211 135-238 (429)
254 3mkq_B Coatomer subunit alpha; 86.9 13 0.00045 34.1 13.7 47 63-116 15-61 (177)
255 3spa_A Mtrpol, DNA-directed RN 86.8 5.7 0.00019 46.1 13.4 93 22-118 130-230 (1134)
256 3lpz_A GET4 (YOR164C homolog); 86.2 24 0.00081 35.7 16.3 131 28-173 21-160 (336)
257 4b4t_P 26S proteasome regulato 85.7 6.2 0.00021 40.9 12.2 103 57-178 141-247 (445)
258 4fhn_B Nucleoporin NUP120; pro 84.4 8.1 0.00028 44.7 13.6 139 58-205 817-961 (1139)
259 4b4t_S RPN3, 26S proteasome re 81.7 5.5 0.00019 42.7 9.8 143 61-216 144-305 (523)
260 4fhn_B Nucleoporin NUP120; pro 79.2 30 0.001 40.0 15.8 120 29-174 822-963 (1139)
261 4ady_A RPN2, 26S proteasome re 76.9 30 0.001 39.7 14.4 99 18-117 406-518 (963)
262 4ady_A RPN2, 26S proteasome re 67.1 16 0.00055 41.9 9.3 178 32-213 387-591 (963)
263 1qsa_A Protein (soluble lytic 66.8 65 0.0022 34.9 13.8 121 28-177 223-347 (618)
264 1qsa_A Protein (soluble lytic 64.6 77 0.0026 34.3 13.8 57 152-209 289-346 (618)
265 3esl_A Checkpoint serine/threo 60.6 72 0.0025 29.9 11.0 53 66-118 92-144 (202)
266 2crb_A Nuclear receptor bindin 58.5 14 0.00047 30.8 4.9 28 150-177 16-43 (97)
267 4gq2_M Nucleoporin NUP120; bet 56.5 90 0.0031 35.4 13.1 116 58-183 815-932 (950)
268 3ax2_A Mitochondrial import re 50.3 59 0.002 25.6 7.3 30 58-87 22-51 (73)
269 3t5v_B Nuclear mRNA export pro 48.7 48 0.0017 34.7 8.5 98 68-182 141-254 (455)
270 2wpv_A GET4, UPF0363 protein Y 47.9 98 0.0033 30.7 10.3 122 63-205 23-158 (312)
271 2w2u_A Hypothetical P60 katani 46.6 27 0.00093 27.9 4.9 27 151-177 21-47 (83)
272 3t5x_A PCI domain-containing p 46.6 38 0.0013 31.3 6.6 50 150-199 15-70 (203)
273 3lpz_A GET4 (YOR164C homolog); 44.2 1.9E+02 0.0066 28.9 11.8 23 181-203 134-157 (336)
274 2v6y_A AAA family ATPase, P60 43.8 32 0.0011 27.4 4.9 25 152-176 14-38 (83)
275 2ijq_A Hypothetical protein; s 43.5 88 0.003 28.2 8.4 62 57-118 36-104 (161)
276 2w2u_A Hypothetical P60 katani 43.4 24 0.00084 28.2 4.2 17 102-118 32-48 (83)
277 3ax2_A Mitochondrial import re 43.0 47 0.0016 26.1 5.6 33 153-185 21-53 (73)
278 2v6y_A AAA family ATPase, P60 42.8 30 0.001 27.5 4.6 19 101-119 23-41 (83)
279 4a5x_A MITD1, MIT domain-conta 42.3 34 0.0011 27.5 4.8 27 151-177 18-44 (86)
280 2dl1_A Spartin; SPG20, MIT, st 42.1 25 0.00087 30.2 4.2 86 27-167 11-96 (116)
281 3mv2_A Coatomer subunit alpha; 41.7 1.8E+02 0.0063 29.1 11.1 39 192-238 217-256 (325)
282 4gq2_M Nucleoporin NUP120; bet 41.2 2.3E+02 0.008 32.0 13.3 89 26-118 817-926 (950)
283 2npm_A 14-3-3 domain containin 41.0 2.6E+02 0.0088 27.1 17.8 45 166-210 173-227 (260)
284 4b4t_O 26S proteasome regulato 39.4 2.5E+02 0.0084 28.2 12.0 99 60-177 83-197 (393)
285 2v6x_A Vacuolar protein sortin 39.1 42 0.0014 26.5 4.9 27 151-177 15-41 (85)
286 2crb_A Nuclear receptor bindin 38.3 34 0.0012 28.4 4.2 23 57-79 19-41 (97)
287 2br9_A 14-3-3E, 14-3-3 protein 37.1 2.8E+02 0.0095 26.3 14.4 44 166-209 147-201 (234)
288 1wfd_A Hypothetical protein 15 36.8 46 0.0016 27.0 4.9 27 151-177 17-43 (93)
289 4aez_C MAD3, mitotic spindle c 35.0 1.9E+02 0.0064 27.4 9.5 50 69-118 130-179 (223)
290 2cpt_A SKD1 protein, vacuolar 34.8 43 0.0015 28.5 4.6 25 152-176 21-45 (117)
291 1wy6_A Hypothetical protein ST 34.2 1.8E+02 0.0062 26.2 8.6 79 33-118 75-154 (172)
292 1wfd_A Hypothetical protein 15 34.1 48 0.0016 26.9 4.6 17 102-118 28-44 (93)
293 3esl_A Checkpoint serine/threo 33.9 2.3E+02 0.008 26.4 9.8 67 19-85 76-147 (202)
294 2cpt_A SKD1 protein, vacuolar 33.5 55 0.0019 27.8 5.0 18 102-119 31-48 (117)
295 2rpa_A Katanin P60 ATPase-cont 32.1 34 0.0012 27.3 3.2 26 153-178 16-41 (78)
296 3re2_A Predicted protein; meni 32.0 3.1E+02 0.011 28.3 10.9 70 168-237 276-355 (472)
297 1om2_A Protein (mitochondrial 30.9 89 0.003 25.8 5.7 29 58-86 25-53 (95)
298 4a1g_A Mitotic checkpoint seri 30.5 2.9E+02 0.0098 24.5 9.4 109 5-118 10-130 (152)
299 2v6x_A Vacuolar protein sortin 30.4 62 0.0021 25.5 4.6 17 102-118 26-42 (85)
300 3u84_A Menin; MLL, JUND, ledgf 30.1 3.4E+02 0.012 28.5 11.0 71 167-237 297-377 (550)
301 4b4t_O 26S proteasome regulato 27.1 4.8E+02 0.017 26.0 11.8 89 30-118 87-198 (393)
302 3t5v_B Nuclear mRNA export pro 26.4 80 0.0027 33.0 5.8 64 58-121 181-253 (455)
303 2cfu_A SDSA1; SDS-hydrolase, l 25.6 1E+02 0.0034 33.6 6.6 51 150-200 450-501 (658)
304 1om2_A Protein (mitochondrial 25.5 65 0.0022 26.7 3.9 29 153-181 24-52 (95)
305 3q8j_A Asteropsin A, ABU8-1; c 23.6 20 0.00068 23.9 0.3 20 273-295 6-25 (37)
306 1wy6_A Hypothetical protein ST 23.3 4.1E+02 0.014 23.9 12.8 52 158-209 100-153 (172)
307 2cwy_A Hypothetical protein TT 23.2 2E+02 0.007 23.2 6.6 59 58-118 6-68 (94)
308 3iqu_A 14-3-3 protein sigma; s 22.9 4.9E+02 0.017 24.7 16.2 72 165-238 149-231 (236)
309 4a5x_A MITD1, MIT domain-conta 22.5 1E+02 0.0035 24.6 4.6 23 100-122 27-49 (86)
310 3uzd_A 14-3-3 protein gamma; s 21.6 5.4E+02 0.018 24.6 17.5 45 165-209 147-202 (248)
311 3t5x_A PCI domain-containing p 21.1 1.9E+02 0.0064 26.5 6.7 33 55-87 16-48 (203)
312 4aez_C MAD3, mitotic spindle c 21.0 3.2E+02 0.011 25.8 8.3 49 37-85 132-182 (223)
313 3lxu_X Tripeptidyl-peptidase 2 20.9 1.1E+03 0.038 28.0 16.5 38 54-91 1108-1145(1354)
314 2wvi_A Mitotic checkpoint seri 20.8 1.5E+02 0.0053 26.6 5.8 86 32-117 39-124 (164)
315 3myv_A SUSD superfamily protei 20.7 1.6E+02 0.0056 30.0 6.8 28 150-177 191-218 (454)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=7e-23 Score=191.71 Aligned_cols=174 Identities=19% Similarity=0.187 Sum_probs=158.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV 94 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a 94 (479)
+|.+...+...+.+++..|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.++|+++.... .
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~--~ 78 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM--V 78 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--H
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH--H
Confidence 36667788888889999999999999999999999999999999999999999999999999999999999986654 4
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC
Q 011721 95 LLELYKRS-----------KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN 163 (479)
Q Consensus 95 Lg~lY~kl-----------Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG 163 (479)
++.+|..+ |++++|+..|+++++++|. ++.+++++|.+|..+|
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--------------------------~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--------------------------YAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHcC
Confidence 67889999 9999999999999998654 4458999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 164 DYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 164 dydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
++++|+.+|++|++++ +++.++. ||.+|..+|++++|+. +.+++.++|++..+
T Consensus 133 ~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 187 (217)
T 2pl2_A 133 ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187 (217)
T ss_dssp CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999 8888877 9999999999999999 99999999998764
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=1.4e-22 Score=181.43 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=156.0
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011721 18 GDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97 (479)
Q Consensus 18 ~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~ 97 (479)
....|...+.++...|++++|+.+|+++|+.+|++..++..+|.+|...|++++|+..+.+++...|+++.... .++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY--ILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH--HHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999876543 4568
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
++...+++++|+..+.+++.+.|. +..++..+|.+|..+|++++|+.+|+++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~--------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV--------------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc--------------------------chHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 899999999999999999988554 345889999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
++|+++.++. ||.+|..+|++++|+. +.++|+++|+++
T Consensus 136 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 136 IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 9999999887 9999999999999999 999999999754
No 3
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=2.3e-21 Score=190.81 Aligned_cols=222 Identities=14% Similarity=0.075 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+..++..|++++|+.+|++++..+|++..++..+|.+|...|++++|+..|++++.++|+++... ..++.+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL--MALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHH
Confidence 3777788899999999999999999999999999999999999999999999999999999999987654 44678999
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCC-------------------CchHHHHhhchhHHHhhhhh--HHHHHHHHHHHH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGG-------------------KSTKIARSQGRKTQITLVQE--LSRISGNLAWAY 159 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~-------------------k~~~~A~~~g~k~~l~L~pe--~~~al~nLG~ay 159 (479)
.+|++++|+.+|++++++.|....... .....|.....+. +.+.|+ ++.+++++|.+|
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA-AHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH-HHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH-HHhCcCccCHHHHHHHHHHH
Confidence 999999999999999999987542210 1122333333322 567788 889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHH
Q 011721 160 LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTE 234 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~e 234 (479)
..+|++++|+.+|+++++++|+++.+++ ||.+|..+|++++|+. +.+++.++|++..+.. ......++..+++..
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999887 9999999999999999 9999999999866422 112233445555566
Q ss_pred HHhhhhcCCCC
Q 011721 235 LESQSMLQPTD 245 (479)
Q Consensus 235 l~~a~~~~P~~ 245 (479)
+++++.+.|.+
T Consensus 304 ~~~al~~~~~~ 314 (365)
T 4eqf_A 304 FLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHhCccc
Confidence 66666666653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=3.9e-21 Score=191.21 Aligned_cols=202 Identities=17% Similarity=0.104 Sum_probs=99.5
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l 91 (479)
+...|.....+...+.++...|++++|+.+|++++..+|++..++.++|.++...|++++|+..|++++..+|++....
T Consensus 60 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~- 138 (388)
T 1w3b_A 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR- 138 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHH-
T ss_pred HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH-
Confidence 3334444444444444444445555555555555554454444445555555555555555555555555544443222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh---------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA---------CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la---------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l 162 (479)
..++.+|..+|++++|+..|++++.+.|.... ........|...+.+. +.++|++..++.++|.++...
T Consensus 139 -~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 139 -SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA-VTLDPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp -HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHc
Confidence 22344455555555555555555555443110 0011112222222221 344555555666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 163 NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 163 GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|++++|+..|++++.++|+++..+. ||.+|..+|++++|+. +.+++.++|+++.
T Consensus 217 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 272 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272 (388)
T ss_dssp TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred CCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 6666666666666666666655554 6666666666666666 5556666665543
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=4.9e-21 Score=190.49 Aligned_cols=238 Identities=16% Similarity=0.124 Sum_probs=194.9
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.++...|++++|+..|.+++..+|+...++..+|.++...|++++|++.|++++..+|++
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 45566777888777888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAW 157 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ 157 (479)
+.... .++.+|...|++++|+..|++++.+.|..... .......|.....+. +.+.|++..++.++|.
T Consensus 169 ~~~~~--~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 169 AVAWS--NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA-LSLSPNHAVVHGNLAC 245 (388)
T ss_dssp HHHHH--HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHH-HHHCTTCHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCcCCHHHHHHHHH
Confidence 76543 46789999999999999999999998864311 112222333333222 5678889999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHH
Q 011721 158 AYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLML 232 (479)
Q Consensus 158 ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL 232 (479)
+|..+|++++|+.+|+++++++|+++.++. ||.+|...|++++|+. +.+++.++|++...... .....++..+++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999998887 9999999999999999 99999999988664221 112224455666
Q ss_pred HHHHhhhhcCCCChh
Q 011721 233 TELESQSMLQPTDYG 247 (479)
Q Consensus 233 ~el~~a~~~~P~~~~ 247 (479)
..+++++...|++..
T Consensus 326 ~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 326 RLYRKALEVFPEFAA 340 (388)
T ss_dssp HHHHHHTTSCTTCHH
T ss_pred HHHHHHHhcCCCcHH
Confidence 667777778887654
No 6
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=2.3e-21 Score=181.35 Aligned_cols=173 Identities=17% Similarity=0.075 Sum_probs=147.4
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-----------CChHHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL-----------DRSEEAIE 74 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~-----------GrydEAie 74 (479)
..+.+++...|.....+...+.++...|++++|+..|++++.++|++..++.++|.++..+ |++++|+.
T Consensus 26 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~ 105 (217)
T 2pl2_A 26 TLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105 (217)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHH
Confidence 3466778889988888889999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHH
Q 011721 75 AIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGN 154 (479)
Q Consensus 75 ~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~n 154 (479)
.|+++++++|+++...+ .+|.+|..+|++++|+..|+++++++ . ++.++++
T Consensus 106 ~~~~al~~~P~~~~~~~--~lg~~~~~~g~~~~A~~~~~~al~~~-~--------------------------~~~~~~~ 156 (217)
T 2pl2_A 106 VLKDAERVNPRYAPLHL--QRGLVYALLGERDKAEASLKQALALE-D--------------------------TPEIRSA 156 (217)
T ss_dssp HHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHC-C--------------------------CHHHHHH
T ss_pred HHHHHHHhCcccHHHHH--HHHHHHHHcCChHHHHHHHHHHHhcc-c--------------------------chHHHHH
Confidence 99999999999886654 46789999999999999999999984 2 3458999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
+|.+|..+|++++|+..|+++++++|+++.++. ||.++..+|++++|+. +.++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999998887 9999999999999999 5554
No 7
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.3e-20 Score=172.00 Aligned_cols=220 Identities=11% Similarity=0.072 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh--H---HHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS--Q---ESLDNVL 95 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da--~---~~l~~aL 95 (479)
.+...+.+++..|++++|+.+|.+++..+ .+..++..+|.++...|++++|+..|++++.++|++. . ......+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 45667788899999999999999999988 8889999999999999999999999999999988652 0 2334557
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC-CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGG-KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~-k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
+.+|...|++++|+.+|++++.+.|....+.. .....|....... +.+.|+...++.++|.+|..+|++++|+.+|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAE-AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHH-HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999999999999999999999776432110 1112222222221 457788899999999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcC
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQ 242 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~ 242 (479)
+++++|+++..+. +|.+|..+|++++|+. +.+++..+|++..... ......++..+++..+.+++.+.
T Consensus 165 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999998887 9999999999999999 9999999999866422 11122244445555555555556
No 8
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=2.7e-20 Score=181.80 Aligned_cols=222 Identities=15% Similarity=0.093 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+.+++..|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++.++|+++... ..++.+|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL--MALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHH
Confidence 4667778899999999999999999999999999999999999999999999999999999999987654 34678999
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCC------------------------chHHHHhhchhHHHhhhhh--HHHHHHH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGK------------------------STKIARSQGRKTQITLVQE--LSRISGN 154 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k------------------------~~~~A~~~g~k~~l~L~pe--~~~al~n 154 (479)
..|++++|+..|++++.+.|........ ....|.....+. +.+.|+ ...++.+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA-VRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH-HHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH-HHhCcCcccHHHHHH
Confidence 9999999999999999998865432210 011222222211 567788 7899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHH
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHAS 229 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~ 229 (479)
+|.+|..+|++++|+.+|+++++++|+++..++ +|.+|..+|++++|+. +.+++.++|++..+... .....++..
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999998887 9999999999999999 99999999988664221 112234444
Q ss_pred HHHHHHHhhhhcCCCC
Q 011721 230 LMLTELESQSMLQPTD 245 (479)
Q Consensus 230 eaL~el~~a~~~~P~~ 245 (479)
+++..+.+++...|.+
T Consensus 303 ~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 303 EAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 5555555555556654
No 9
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=1.4e-20 Score=174.35 Aligned_cols=204 Identities=15% Similarity=0.064 Sum_probs=157.3
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p-~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~ 97 (479)
+..+...+.+++..|++++|+.+|.+++..+| .+..+++.+|.++...|++++|+..|++++..+|+++... ..+|.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAY--IGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHH--HHHHH
Confidence 34666788889999999999999999999998 8888999999999999999999999999999999976554 44678
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
+|..+|++++|+..|+++++++|....+ ......++.++|.++..+|++++|+.+|++|++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATI-------------------EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHH-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHH-------------------HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 9999999999999999999998764321 111225899999999999999999999999999
Q ss_pred cCCC--CHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCccchH-HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 178 LESD--KNKQCN-LAICLIRLNRIAEAKSLLQAVRASSRNEKMDE-SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 178 LdPd--na~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P~n~~a~~-~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++|+ ++.++. ||.+|..+|+.. +.++..+.+.+..... ......+...+++..+++++.++|++..
T Consensus 146 ~~p~~~~~~~~~~l~~~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 146 VTSKKWKTDALYSLGVLFYNNGADV----LRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHH----HHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHH----HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 9999 888877 999998876540 3333444333322111 1112223344555556666666776554
No 10
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=2.2e-21 Score=215.67 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=157.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV 94 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a 94 (479)
.|.....|...+.++...|++++|+.+|++||+++|++..++++||.+|.++|++++|++.|+++++++|+++.++.+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n-- 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN-- 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--
Confidence 455556777889999999999999999999999999999999999999999999999999999999999999876544
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
+|.+|..+|++++|++.|++|++++|. +..++++||.+|..+|++++|+.+|++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~--------------------------~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA--------------------------FADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 678999999999999999999998554 446999999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
|++++|+++.++. ||.+|..+|++++|+. +.+++.+.|+.
T Consensus 137 Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 9999999999887 9999999999999999 88999887653
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=7.4e-20 Score=174.73 Aligned_cols=238 Identities=11% Similarity=0.028 Sum_probs=195.3
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhcCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G-rydEAie~lekal~l~P~ 85 (479)
.+.+++...|.....+...+.+++..|++++|+.+|.+++..+|++..++..+|.++...| ++++|+..|++++.++|.
T Consensus 44 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 123 (330)
T 3hym_B 44 LTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT 123 (330)
T ss_dssp HHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc
Confidence 4566788888887777767778888999999999999999999999999999999999999 999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh---------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA---------CGGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la---------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
++.... .++.+|...|++++|+..|++++.+.|.... ........|....... +.+.|++..++.++|
T Consensus 124 ~~~~~~--~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~l~ 200 (330)
T 3hym_B 124 YGPAWI--AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA-LSIAPEDPFVMHEVG 200 (330)
T ss_dssp CTHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTCTTCHHHHHHHH
T ss_pred cHHHHH--HHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhCCCChHHHHHHH
Confidence 876544 4678999999999999999999999875211 0112233343333322 567788899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC---------CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLE---------SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYA 222 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLd---------Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~ 222 (479)
.+|..+|++++|+.+|++++++. |.++..+. +|.+|..+|++++|+. +.+++.++|++..+.. ...
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 280 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH 280 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 99999999999999999999997 66666776 9999999999999999 9999999999876432 122
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 223 KSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 223 k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
...++..+++..+.+++..+|.+..
T Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 281 SLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp HHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred HHhccHHHHHHHHHHHHccCCCchH
Confidence 3446677788888889999998765
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=4e-20 Score=185.95 Aligned_cols=238 Identities=13% Similarity=0.053 Sum_probs=182.8
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+..++...|.....+...+..++..|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++..+|++
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 45566777777667777788889999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH---hcC---------------------CCchHHHHhhchhHHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI---ACG---------------------GKSTKIARSQGRKTQI 142 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~l---a~~---------------------~k~~~~A~~~g~k~~l 142 (479)
.... ..++.+|..+|++++|+..|++++.+.|... ... ......|....... +
T Consensus 94 ~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~ 170 (450)
T 2y4t_A 94 TAAR--LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI-L 170 (450)
T ss_dssp HHHH--HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-H
T ss_pred HHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-H
Confidence 6554 4467899999999999999999999887543 110 01112222222221 4
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH-
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE- 219 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~- 219 (479)
.+.|.+..++.++|.+|..+|++++|+.+|+++++++|+++..+. +|.+|...|++++|+. +.+++.++|++.....
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 250 (450)
T 2y4t_A 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 667888899999999999999999999999999999999998887 9999999999999999 8899999998865311
Q ss_pred --------------HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 220 --------------SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 220 --------------~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
......++..+++..+.+.+...|.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 292 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH
Confidence 1112224445556666666677887654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.6e-19 Score=173.60 Aligned_cols=224 Identities=15% Similarity=0.089 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+..++..|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++.++|++.... ..++.+|.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR--LQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHH--HHHHHHHH
Confidence 4566778889999999999999999999999999999999999999999999999999999999987554 44678999
Q ss_pred HcCCHHHHHHHHHHHHHhch---hHHhcC---------------------CCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 101 RSKRIEEEIELLKRKLKKTE---EVIACG---------------------GKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 101 klGr~deAie~lekALkl~p---~~la~~---------------------~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
..|++++|+..|++++.+.| ...... ......|....... +.+.|++..++.++|
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI-LEVCVWDAELRELRA 161 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCchHHHHHHH
Confidence 99999999999999999988 432110 11122222222221 466788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH--------------
Q 011721 157 WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES-------------- 220 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~-------------- 220 (479)
.+|..+|++++|+.+|+++++++|+++..+. +|.+|..+|++++|+. +.+++..+|++......
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887 9999999999999999 99999999988653110
Q ss_pred -HHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 221 -YAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 221 -~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
.....++..+++..+.+.+...|.+..
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 012224455666666666777887654
No 14
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.85 E-value=7.7e-21 Score=196.03 Aligned_cols=196 Identities=14% Similarity=0.088 Sum_probs=164.6
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDR-SEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr-ydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
..+...+.++...|++++|+.+|.++|.++|++..+++++|.+|..+|+ +++|+..|++++.++|++..++.+ ++.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~--~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH--RRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH--HHHH
Confidence 3556677788889999999999999999999999999999999999997 999999999999999999876654 5678
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
|..+|++++|+..|++||+++|. +..+|+++|++|..+|++++|+.+|+++|++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~--------------------------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK--------------------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc--------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99999999999999999998654 4459999999999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHH-cCCHHHH-----HH-HHHHHHhcCCCccchHHH---H-----HHHHHHHHHHHHHHhhhhcC
Q 011721 179 ESDKNKQCN-LAICLIR-LNRIAEA-----KS-LLQAVRASSRNEKMDESY---A-----KSFEHASLMLTELESQSMLQ 242 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~-lGr~dEA-----i~-l~kAL~l~P~n~~a~~~~---~-----k~~~rA~eaL~el~~a~~~~ 242 (479)
+|++..+++ +|.+|.. .|.+++| +. +.++|.++|++..+.... + ..+++|.+.+..+ ..+
T Consensus 230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~----~~~ 305 (382)
T 2h6f_A 230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL----QPS 305 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH----TTT
T ss_pred CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh----ccC
Confidence 999999988 9999999 5565888 47 889999999987642211 1 1244555544443 567
Q ss_pred CCChh
Q 011721 243 PTDYG 247 (479)
Q Consensus 243 P~~~~ 247 (479)
|++..
T Consensus 306 p~~~~ 310 (382)
T 2h6f_A 306 HSSPY 310 (382)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 77543
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.2e-20 Score=185.65 Aligned_cols=209 Identities=17% Similarity=0.092 Sum_probs=169.9
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
..+.+++...|.....+...+.++...|++++|+.+|.+++..+|++..++..+|.+|...|++++|+..|++++.++|+
T Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 86 LFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence 34567788889888888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred ChHHHHH--------HHHHHHHHHcCCHHHHHHHHHHHHHhchh--HHhcC---------CCchHHHHhhchhHHHhhhh
Q 011721 86 DSQESLD--------NVLLELYKRSKRIEEEIELLKRKLKKTEE--VIACG---------GKSTKIARSQGRKTQITLVQ 146 (479)
Q Consensus 86 da~~~l~--------~aLg~lY~klGr~deAie~lekALkl~p~--~la~~---------~k~~~~A~~~g~k~~l~L~p 146 (479)
+...... ..++.+|...|++++|+.+|++++.+.|. ..... ......|.....+. +.+.|
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p 244 (365)
T 4eqf_A 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA-LTVRP 244 (365)
T ss_dssp HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCT
T ss_pred chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCC
Confidence 5443322 23468899999999999999999999876 21100 02223333333322 56788
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
++..+++++|.+|..+|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++.+.|++.
T Consensus 245 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 245 EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 89999999999999999999999999999999999998887 9999999999999999 999999998753
No 16
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=2.9e-19 Score=161.27 Aligned_cols=207 Identities=13% Similarity=0.046 Sum_probs=167.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV 94 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a 94 (479)
.|.....+...+.+++..|++++|+.+|.+++..+|+...++..+|.++...|++++|++.|++++..+|.+.... ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~ 81 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN--NN 81 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH--HH
Confidence 3444455667788899999999999999999999999999999999999999999999999999999999987654 44
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 95 LLELYKRS-KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 95 Lg~lY~kl-Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
++.+|... |++++|+..|++++. .|. .|....+++++|.+|..+|++++|+.+|+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~-~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALA-DPT-----------------------YPTPYIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHT-STT-----------------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHc-CcC-----------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67899999 999999999999998 211 23344689999999999999999999999
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC-CCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASS-RNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P-~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++++++|++...+. +|.++..+|++++|+. +.+++...| .+..... ......+...++...+.......|++..
T Consensus 138 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 138 RSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 99999999998887 9999999999999999 889999999 7755321 1111222233333333333445777655
No 17
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.84 E-value=3.6e-19 Score=163.32 Aligned_cols=199 Identities=14% Similarity=0.090 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+..++..|++++|+.+|.+++..+|+...++..+|.++...|++++|+..|++++..+|.+.... ..++.+|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY--YGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHH--HHHHHHHH
Confidence 4555667788889999999999999999999999999999999999999999999999999999876544 34678899
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
..|++++|+..|++++++.|.. ..++..+|.+|..+|++++|+.+|++++++.|
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~--------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMEN--------------------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCS--------------------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HhccHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999986542 24778888888888888888888888888888
Q ss_pred CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 181 DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 181 dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++...+. +|.++...|++++|+. +.+++..+|++...... .....++..+++..+.+.+..+|++..
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 8887776 8888888888888888 77888888877553221 112223445555566666667787665
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=8.5e-19 Score=167.36 Aligned_cols=238 Identities=12% Similarity=0.060 Sum_probs=182.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+...+...|.+...+...+..++..|++++|+.+|.+++..+|....++..++.++...|++++|+..+++++..+|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp ----------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred hhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 34556667787777777778888999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 87 SQESLDNVLLELYKRSK-RIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 87 a~~~l~~aLg~lY~klG-r~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
+.... .++.+|...| ++++|+.+|++++.+.|..... .......|....... +.+.|+...++..+|
T Consensus 90 ~~~~~--~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 90 PVSWF--AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA-AQLMKGCHLPMLYIG 166 (330)
T ss_dssp THHHH--HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHTTTCSHHHHHHH
T ss_pred HHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhccccHHHHHHHH
Confidence 76554 4678999999 9999999999999998763211 012223333333322 466788788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC---------CccchH---HHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR---------NEKMDE---SYA 222 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~---------n~~a~~---~~~ 222 (479)
.+|..+|++++|+.+|+++++++|+++..+. +|.+|..+|++++|+. +.+++...|. +..+.. ...
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887 9999999999999999 8899998743 222211 111
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 223 KSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 223 k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
...++..+++..+.+++...|.+..
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~ 271 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNAS 271 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred HHhcCHHHHHHHHHHHHhhCccchH
Confidence 2234455666666667777887654
No 19
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.84 E-value=8.2e-20 Score=188.37 Aligned_cols=212 Identities=12% Similarity=0.052 Sum_probs=176.8
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKD-PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd-~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
..+.+++...|.....+...+.++...|+ +++|+.+|.+||.++|++..+++++|.+|..+|++++|+..|++++.++|
T Consensus 118 ~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP 197 (382)
T 2h6f_A 118 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197 (382)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 35677888999988888888999999996 99999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH-cC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ-QN 163 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~-lG 163 (479)
++..++.+ ++.+|..+|++++|+.+|+++|+++|. +..+|+++|.+|.. .|
T Consensus 198 ~~~~a~~~--lg~~~~~~g~~~eAl~~~~~al~l~P~--------------------------~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 198 KNYHAWQH--RQWVIQEFKLWDNELQYVDQLLKEDVR--------------------------NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp TCHHHHHH--HHHHHHHHTCCTTHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhcC
Confidence 99877654 568899999999999999999998654 44599999999999 55
Q ss_pred CHHHH-----HHHHHHHHHcCCCCHHHHH-HHHHHHHcC--CHHHHHH-HHHHHHhcCCCccchH----HHHHHH-----
Q 011721 164 DYESA-----ERYYMKALSLESDKNKQCN-LAICLIRLN--RIAEAKS-LLQAVRASSRNEKMDE----SYAKSF----- 225 (479)
Q Consensus 164 dydeA-----~~~yrKALeLdPdna~a~n-LG~~L~~lG--r~dEAi~-l~kAL~l~P~n~~a~~----~~~k~~----- 225 (479)
.+++| +.+|++||+++|++..+++ ||.+|..+| ++++|+. +.++ ..+|++..+.. .+....
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 55888 5999999999999999888 999999988 6999999 6555 88888766432 122110
Q ss_pred --H-HHHHHHHHHHhh-hhcCCCCh
Q 011721 226 --E-HASLMLTELESQ-SMLQPTDY 246 (479)
Q Consensus 226 --~-rA~eaL~el~~a-~~~~P~~~ 246 (479)
+ ...+++..+.+. ..++|...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~ 353 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRK 353 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhH
Confidence 1 235566666666 67788644
No 20
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.84 E-value=1.4e-19 Score=166.04 Aligned_cols=182 Identities=10% Similarity=0.074 Sum_probs=164.9
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++..+|....++..+|.++...|++++|+..|++++..+|.+
T Consensus 45 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 124 (243)
T 2q7f_A 45 AFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124 (243)
T ss_dssp THHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 35566777888777777888899999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
.... ..++.+|...|++++|+..|++++.+.|. +..++..+|.+|...|+++
T Consensus 125 ~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 125 GDLF--YMLGTVLVKLEQPKLALPYLQRAVELNEN--------------------------DTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHH--HHHHHHHHHTSCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHTCCH
T ss_pred HHHH--HHHHHHHHHhccHHHHHHHHHHHHHhCCc--------------------------cHHHHHHHHHHHHHcCCHH
Confidence 7654 44678999999999999999999988543 3459999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 167 SAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|+.+|++++.++|+++..+. +|.+|..+|++++|+. +.+++.++|++..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 999999999999999998887 9999999999999999 8999999998754
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=8e-19 Score=168.67 Aligned_cols=240 Identities=13% Similarity=0.057 Sum_probs=179.7
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC--
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA-- 84 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P-- 84 (479)
.+.+++...|.....+...+.+++..|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++..+|
T Consensus 25 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 104 (359)
T 3ieg_A 25 QFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Confidence 455677888888788888888999999999999999999999999999999999999999999999999999999999
Q ss_pred -CChHHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhh
Q 011721 85 -DDSQESLDN----------VLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITL 144 (479)
Q Consensus 85 -~da~~~l~~----------aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L 144 (479)
++....... .++.+|...|++++|+..|++++.+.|..... .......|....... +.+
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~ 183 (359)
T 3ieg_A 105 QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA-SKL 183 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTT
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh
Confidence 665443322 12578999999999999999999998753211 112222333322222 456
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-------------HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-------------LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-------------LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
.|++..++.++|.+|..+|++++|+.+|+++++++|++...+. +|.++...|++++|+. +.+++..
T Consensus 184 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7788888889999999999999999999999999888876432 3778888888888888 8888888
Q ss_pred cCCCccchH-------HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 211 SSRNEKMDE-------SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 211 ~P~n~~a~~-------~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
.|++..... ......++..+++..+...+..+|.+..
T Consensus 264 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 307 (359)
T 3ieg_A 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN 307 (359)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH
Confidence 888654211 0112223445555555556666777654
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=8.2e-19 Score=167.26 Aligned_cols=221 Identities=17% Similarity=0.144 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.++..+..++..|++++|+.+|.+++..+|+...++..+|.++...|++++|+..|++++.++|++.... ..++.+|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH--AALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHH--HHHHHHHH
Confidence 4456677889999999999999999999999999999999999999999999999999999999987654 34678999
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCC------------------------CchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGG------------------------KSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~------------------------k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
..|++++|+..|++++.+.|....... .....|....... +.+.|++..++..+|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA-LEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHH-HHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH-HhhCCCCHHHHHHHH
Confidence 999999999999999999876432110 0111222222221 466788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLM 231 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~ea 231 (479)
.+|..+|++++|+.+|+++++++|+++..+. +|.+|...|++++|+. +.+++..+|++...... .....++..++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999999999998887 9999999999999999 89999999987654221 11222334445
Q ss_pred HHHHHhhhhcCCC
Q 011721 232 LTELESQSMLQPT 244 (479)
Q Consensus 232 L~el~~a~~~~P~ 244 (479)
+..+.+++...|.
T Consensus 260 ~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 260 AKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCc
Confidence 5555555555666
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.4e-19 Score=176.83 Aligned_cols=206 Identities=16% Similarity=0.100 Sum_probs=173.8
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++..+|++..++..+|.+|...|++++|+..|++++.++|++
T Consensus 86 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 86 LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 45667777888878888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHhchh--HHhc---------CCCchHHHHhhchhHH
Q 011721 87 SQESLDN--------------VLLELYKRSKRIEEEIELLKRKLKKTEE--VIAC---------GGKSTKIARSQGRKTQ 141 (479)
Q Consensus 87 a~~~l~~--------------aLg~lY~klGr~deAie~lekALkl~p~--~la~---------~~k~~~~A~~~g~k~~ 141 (479)
....... .++.++ ..|++++|+..|++++.+.|. .... .......|.....+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a- 243 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA- 243 (368)
T ss_dssp GGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 6543222 244555 899999999999999999887 2210 012233443333332
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 142 ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 142 l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+.+.|++..+++++|.+|..+|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++.+.|++
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5678888999999999999999999999999999999999998887 9999999999999999 99999999987
No 24
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.83 E-value=7.5e-20 Score=191.90 Aligned_cols=178 Identities=15% Similarity=0.042 Sum_probs=150.8
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDP-SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~-eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
+....|.....+...+.+++..+++ ++|+.+|.+|++.+|++..+++.||.+|..+|++++|+++|++++.++|+ .
T Consensus 94 ~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~-- 170 (474)
T 4abn_A 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K-- 170 (474)
T ss_dssp HHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--
T ss_pred HhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--
Confidence 3444554555666777788888888 99999999999888888888888999999999999999999998888887 3
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 90 SLDNVLLELYKRS---------KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 90 ~l~~aLg~lY~kl---------Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
.....++.+|..+ |++++|+..|+++++++|. +..++++||.+|.
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~lg~~~~ 224 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--------------------------DGRSWYILGNAYL 224 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHH
Confidence 3334567788888 8888888888888887544 4459999999999
Q ss_pred Hc--------CCHHHHHHHHHHHHHcCC---CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 161 QQ--------NDYESAERYYMKALSLES---DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 161 ~l--------GdydeA~~~yrKALeLdP---dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
.+ |++++|+.+|++|++++| +++.++. ||.+|..+|++++|+. +.+++.++|++..+
T Consensus 225 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 225 SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99 999999999999999999 8998887 9999999999999999 99999999998753
No 25
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.83 E-value=9.4e-19 Score=165.95 Aligned_cols=193 Identities=15% Similarity=0.062 Sum_probs=158.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ES 90 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~---~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~ 90 (479)
.|.....+...+..++..|++++|+..|.+++...|+. ..+++.+|.+|...|++++|+..|++++..+|+++. ..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34444566677888999999999999999999999888 899999999999999999999999999999997643 23
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc
Q 011721 91 LDNVLLELYKR--------SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 91 l~~aLg~lY~k--------lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l 162 (479)
....+|.+|.. +|++++|+..|++++..+|..... ..+.. ....+.......++++|.+|..+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~~a~~----~~~~~~~~~~~~~~~la~~~~~~ 161 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV-----DDATQ----KIRELRAKLARKQYEAARLYERR 161 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH-----HHHHH----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH-----HHHHH----HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456789999 999999999999999998864210 01110 00123344456789999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCC---HHHHH-HHHHHHHc----------CCHHHHHH-HHHHHHhcCCCcc
Q 011721 163 NDYESAERYYMKALSLESDK---NKQCN-LAICLIRL----------NRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 163 GdydeA~~~yrKALeLdPdn---a~a~n-LG~~L~~l----------Gr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|+|++|+.+|+++++..|++ +.++. ||.+|..+ |++++|+. +.+++...|++..
T Consensus 162 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 99999999999999999995 35666 99999987 99999999 8899999998865
No 26
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.83 E-value=9.4e-19 Score=162.62 Aligned_cols=199 Identities=19% Similarity=0.139 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+.+++..|++++|+.+|.+++..+|....++..+|.++...|++++|++.|++++..+|.+.... ..++.+|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL--NNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH--HHHHHHHH
Confidence 3445567788899999999999999999999999999999999999999999999999999999986544 44678999
Q ss_pred HcCCHHHHHHHHHHHHH--hchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 101 RSKRIEEEIELLKRKLK--KTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 101 klGr~deAie~lekALk--l~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
..|++++|+.+|++++. .. |....++.++|.+|..+|++++|+.+|++++++
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLY--------------------------PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTC--------------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccC--------------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999988 32 334568899999999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
+|++...+. ||.+|..+|++++|+. +.+++...|++..... ......++..+++..+...+...|.+..
T Consensus 171 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 999998877 9999999999999999 8889999998765322 1112223444455555555666777655
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=7.6e-19 Score=172.89 Aligned_cols=186 Identities=14% Similarity=0.096 Sum_probs=149.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 26 KRAQLVEKDPSRAISLFWAAINA--GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l--~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
...+...++.++|+..|++.+.. +|++..+++.+|.+|...|++++|++.|++ |.+.... ..++.+|..+|
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~--~~l~~~~~~~g 144 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECM--AMTVQILLKLD 144 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHH--HHHHHHHHHTT
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHH--HHHHHHHHHCC
Confidence 44556677899999999998875 588999999999999999999999999987 7776544 34668899999
Q ss_pred CHHHHHHHHHHHHHhchhHHh------c-----CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 104 RIEEEIELLKRKLKKTEEVIA------C-----GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la------~-----~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
++++|+..|+++++++|.... + .......|...+... +...|+++.+++++|.+|..+|++++|+.+|
T Consensus 145 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999875320 0 112233444333332 4567888999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHH-HH-HHHHHHhcCCCccchH
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEA-KS-LLQAVRASSRNEKMDE 219 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEA-i~-l~kAL~l~P~n~~a~~ 219 (479)
++|++++|+++.++. ||.++..+|+++++ .. +.+++.++|+++.+.+
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999998877 99999999999875 45 6788999999987543
No 28
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=1.7e-18 Score=174.08 Aligned_cols=240 Identities=14% Similarity=0.075 Sum_probs=182.4
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.+++..|++++|+.+|.+++..+|++..++..+|.+|...|++++|+..|++++.++|++
T Consensus 48 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 127 (450)
T 2y4t_A 48 QFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 34566777888777888888899999999999999999999999999999999999999999999999999999999987
Q ss_pred h---HHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhh
Q 011721 87 S---QESLD----------NVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITL 144 (479)
Q Consensus 87 a---~~~l~----------~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L 144 (479)
. ..... ..++.+|...|++++|+..|++++.+.|..... .......|....... +.+
T Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 206 (450)
T 2y4t_A 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA-SKL 206 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH-HHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh
Confidence 6 43322 123567999999999999999999998753211 011222222222221 456
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-H------------HHHHHHcCCHHHHHH-HHHHHHh
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-L------------AICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-L------------G~~L~~lGr~dEAi~-l~kAL~l 210 (479)
.|++..+++++|.+|..+|++++|+.+|++++.++|++...+. + |.++...|++++|+. +.+++.+
T Consensus 207 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7788889999999999999999999999999999999887654 5 889999999999999 8888998
Q ss_pred cCCCccch----H---HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 211 SSRNEKMD----E---SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 211 ~P~n~~a~----~---~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
.|++.... . ......++..+++..+.+++...|.+..
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 330 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN 330 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 88864311 0 1112223445555556666666777554
No 29
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.81 E-value=1.6e-19 Score=200.84 Aligned_cols=142 Identities=13% Similarity=0.176 Sum_probs=130.6
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC
Q 011721 48 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG 127 (479)
Q Consensus 48 l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~ 127 (479)
..|++.++|++||.+|.++|++++|+++|+++++++|+++.++.+ ||.+|.++|++++|+.+|++||+++|.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~n--Lg~~l~~~g~~~eA~~~~~~Al~l~P~------ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN--LASVLQQQGKLQEALMHYKEAIRISPT------ 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 468889999999999999999999999999999999999876544 678999999999999999999998554
Q ss_pred CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HH
Q 011721 128 KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LL 205 (479)
Q Consensus 128 k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~ 205 (479)
++.+|++||.+|..+|++++|+++|++|++++|+++.+++ ||.+|..+|++++|+. +.
T Consensus 76 --------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 76 --------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4569999999999999999999999999999999999887 9999999999999999 99
Q ss_pred HHHHhcCCCccc
Q 011721 206 QAVRASSRNEKM 217 (479)
Q Consensus 206 kAL~l~P~n~~a 217 (479)
++++++|++..+
T Consensus 136 ~Al~l~P~~~~a 147 (723)
T 4gyw_A 136 TALKLKPDFPDA 147 (723)
T ss_dssp HHHHHCSCCHHH
T ss_pred HHHHhCCCChHH
Confidence 999999998765
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.4e-18 Score=160.02 Aligned_cols=192 Identities=15% Similarity=0.043 Sum_probs=148.4
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV-------DSALKDMAVVMKQLDRSEEAIEAIKSFR 80 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~-------~~Al~~LA~vL~~~GrydEAie~lekal 80 (479)
+.+++... .....+...+.++...|++++|+.+|.+++..+|+. ..++..+|.++...|++++|+..|++++
T Consensus 28 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 28 YNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106 (258)
T ss_dssp HHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44555555 556777788889999999999999999999977665 6889999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHH
Q 011721 81 CLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRI 151 (479)
Q Consensus 81 ~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~a 151 (479)
.+.|. +.++...|++++|+..|++++...|..... .......|.....+. +.+.|.+..+
T Consensus 107 ~~~~~----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~ 175 (258)
T 3uq3_A 107 TEHRT----------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM-IKRAPEDARG 175 (258)
T ss_dssp HHCCC----------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHH
T ss_pred hcCch----------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH-HhcCcccHHH
Confidence 98775 123445555556666666655555542210 001122222222221 3445666679
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
+.++|.+|..+|++++|+.+|+++++++|+++.++. +|.+|..+|++++|+. +.+++.++
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998887 9999999999999999 99999999
No 31
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=2.1e-18 Score=150.22 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+.+++..|++++|+.+|.+++...|....++..+|.++...|++++|+..|++++..+|.+.... ..++.+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA--TVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHH
Confidence 3445677888899999999999999999999999999999999999999999999999999999987554 34678899
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
..|++++|+.+|++++.+.|. +..++..+|.+|..+|++++|+.+|++++++.|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPI--------------------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHhcCcH--------------------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 999999999999999988554 334889999999999999999999999999999
Q ss_pred CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 181 DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 181 dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++...+. +|.++..+|++++|+. +.+++.++|++..
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 9998877 9999999999999999 8899999988754
No 32
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.81 E-value=3.2e-19 Score=165.72 Aligned_cols=166 Identities=12% Similarity=0.060 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKD----------------MAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~----------------LA~vL~~~GrydEAie~lekal~l~P 84 (479)
.++..+..++..|++++|+.+|.+++..+|++..+++. +|.+|...|++++|+..|++++.++|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 44556677889999999999999999999999999999 99999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
+++...+ .+|.+|..+|++++|+..|+++++++|. ++.++++||.+|..+|+
T Consensus 86 ~~~~~~~--~lg~~~~~~g~~~~A~~~~~~al~~~P~--------------------------~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 86 NNVDCLE--ACAEMQVCRGQEKDALRMYEKILQLEAD--------------------------NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp TCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------------CHHHHHHHHHHHHHHhH
Confidence 9986654 4678999999999999999999998554 44599999999987764
Q ss_pred --HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 165 --YESAERYYMKALSLESDKNKQCNLAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 165 --ydeA~~~yrKALeLdPdna~a~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.+.|+..|++++...|.....+++|.++..+|++++|+. +.+++.++|+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 567788899887655443334559999999999999999 99999999974
No 33
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.81 E-value=6.1e-18 Score=176.61 Aligned_cols=236 Identities=10% Similarity=0.038 Sum_probs=147.4
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH
Q 011721 9 FHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ 88 (479)
Q Consensus 9 ~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~ 88 (479)
.+++...|.....+...+.++...|++++|+..|.+++...|++..++..+|.+|...|++++|++.|++++.++|.+..
T Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 408 (597)
T 2xpi_A 329 TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408 (597)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence 33444455555555555555556666666666666666666666667777777777777777777777777777777654
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 89 ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 89 ~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
.+ +.++.+|.+.|++++|+..|++++.+.|..... .......|...+... +.+.|+++.+++.+|.+|
T Consensus 409 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 409 AW--IGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS-YALFQYDPLLLNELGVVA 485 (597)
T ss_dssp HH--HHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHH
Confidence 33 335567777777777777777777766542100 001122222222221 355666777788888888
Q ss_pred HHcCCHHHHHHHHHHHHHc------CCCC-HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHH
Q 011721 160 LQQNDYESAERYYMKALSL------ESDK-NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEH 227 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeL------dPdn-a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~r 227 (479)
...|++++|+.+|++++++ +|++ ...+. ||.+|...|++++|+. +.+++.++|++...... .....++
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 8888888888888888877 5554 45665 8888888888888888 77777777776553221 1122344
Q ss_pred HHHHHHHHHhhhhcCCCChh
Q 011721 228 ASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 228 A~eaL~el~~a~~~~P~~~~ 247 (479)
..+++..+++.+.++|++..
T Consensus 566 ~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 566 PGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhcCCCChH
Confidence 45555556666666777654
No 34
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=2.1e-18 Score=154.19 Aligned_cols=166 Identities=11% Similarity=0.016 Sum_probs=143.8
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
....|++||.+|..+|++++|++.|+++++++|+++.... .++.+|..+|++++|+..+.+++...|.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~~~~~~a~~~~~~~~~~~~~---------- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLL--KLGKTYMDIGLPNDAIESLKKFVVLDTT---------- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCCC----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHhcCch----------
Confidence 4568999999999999999999999999999999987654 4678999999999999999999987544
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
...++.++|.++...++++.|+..+.+++.++|++..++. +|.+|..+|++++|+. +.+++.
T Consensus 72 ----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 72 ----------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 3458899999999999999999999999999999999887 9999999999999999 999999
Q ss_pred hcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCC
Q 011721 210 ASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTD 245 (479)
Q Consensus 210 l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~ 245 (479)
++|++..+.. ......++..+++..+++++.++|.+
T Consensus 136 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 136 IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 9999876532 11233466777777888888888853
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=5.5e-18 Score=157.41 Aligned_cols=182 Identities=15% Similarity=0.099 Sum_probs=161.4
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hcC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC--LCA 84 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~--l~P 84 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++..+|....++..+|.+|...|++++|+++|++++. ..|
T Consensus 59 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 138 (252)
T 2ho1_A 59 PLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP 138 (252)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc
Confidence 455667777877777778888999999999999999999999999999999999999999999999999999998 666
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
.+... ...++.+|...|++++|+.+|++++++.|. +..++..+|.+|..+|+
T Consensus 139 ~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 139 ERSRV--FENLGLVSLQMKKPAQAKEYFEKSLRLNRN--------------------------QPSVALEMADLLYKERE 190 (252)
T ss_dssp THHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------------------------CHHHHHHHHHHHHHTTC
T ss_pred ccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--------------------------cHHHHHHHHHHHHHcCC
Confidence 65443 345678999999999999999999988543 33588999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 165 YESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 165 ydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++|+.+|++++++.|++...+. ++.++...|++++|+. +.+++.+.|++..
T Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999998887 9999999999999999 8889999998754
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=9.3e-19 Score=166.86 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=170.2
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++..+|.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 43 AFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 45567778888777888888899999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHH-----------HH-HH-HHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhh
Q 011721 87 SQESLDN-----------VL-LE-LYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITL 144 (479)
Q Consensus 87 a~~~l~~-----------aL-g~-lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L 144 (479)
....... .+ +. +|...|++++|+..|+++++..|..... .......|....... +.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~ 201 (327)
T 3cv0_A 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA-VEL 201 (327)
T ss_dssp TTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH-HHh
Confidence 6543221 00 23 4788899999999999999998753210 112233333333322 466
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.|++..++.++|.+|..+|++++|+.+|+++++++|++...+. +|.+|..+|++++|+. +.+++.+.|++
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 202 RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 7888899999999999999999999999999999999998887 9999999999999999 88999999983
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=3.3e-18 Score=160.36 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=153.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH--HHHHHHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE--SLDNVLLELY 99 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~--~l~~aLg~lY 99 (479)
.+..+..++..|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++. .|.++.. .....+|.+|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHH
Confidence 344556677788888888888888888887777888888888888888888888888877 4433322 1234466788
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
...|++++|+.+|++++++.|..... .......|.....+. +.+.|.+..+++++|..++..+++++|+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ-IRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG-CCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH-hhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877653210 012222333222222 34567777889999955555669999999
Q ss_pred HHHHHHHcCCCCHHHHH-HHHHHHHcCC---HHHHHH-HHHHHHhc---CCCcc--chH------HHHHHHHHHHHHHHH
Q 011721 171 YYMKALSLESDKNKQCN-LAICLIRLNR---IAEAKS-LLQAVRAS---SRNEK--MDE------SYAKSFEHASLMLTE 234 (479)
Q Consensus 171 ~yrKALeLdPdna~a~n-LG~~L~~lGr---~dEAi~-l~kAL~l~---P~n~~--a~~------~~~k~~~rA~eaL~e 234 (479)
+|+++++++|++..++. +|.++..+|+ +++|+. +.+++.+. |+... ... ......++..+++..
T Consensus 164 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999987776 9999999888 888999 88888776 33110 001 011223455666777
Q ss_pred HHhhhhcCCCChh
Q 011721 235 LESQSMLQPTDYG 247 (479)
Q Consensus 235 l~~a~~~~P~~~~ 247 (479)
+.+++.++|++..
T Consensus 244 ~~~al~~~p~~~~ 256 (272)
T 3u4t_A 244 WKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHCTTCHH
T ss_pred HHHHHhcCccHHH
Confidence 7777788888665
No 38
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.79 E-value=6.5e-18 Score=173.35 Aligned_cols=211 Identities=14% Similarity=0.065 Sum_probs=159.9
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHH--------
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK-------- 77 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~le-------- 77 (479)
..+.+++...|.....+...+.+++..|++++|+..|.+++..+|++..++..+|.++...|++++|+..|+
T Consensus 46 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 125 (537)
T 3fp2_A 46 KYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDF 125 (537)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Confidence 346677888888888888888899999999999999999999999999999999999999999988887663
Q ss_pred --------------------------------------------------------------------------------
Q 011721 78 -------------------------------------------------------------------------------- 77 (479)
Q Consensus 78 -------------------------------------------------------------------------------- 77 (479)
T Consensus 126 ~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 205 (537)
T 3fp2_A 126 DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYS 205 (537)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------HHHHhcCCChHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc------
Q 011721 78 ---------------------SFRCLCADDSQES-----LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC------ 125 (479)
Q Consensus 78 ---------------------kal~l~P~da~~~-----l~~aLg~lY~klGr~deAie~lekALkl~p~~la~------ 125 (479)
+++..+|++.... ....++.+|...|++++|+..|++++.+.|.....
T Consensus 206 ~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 206 ATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALT 285 (537)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 2223344443211 12334577888888888888888888887762110
Q ss_pred --CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHH
Q 011721 126 --GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAK 202 (479)
Q Consensus 126 --~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi 202 (479)
.......|....... +.+.|+++.++.++|.+|..+|++++|+.+|+++++++|++...+. +|.+|..+|++++|+
T Consensus 286 ~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKA-VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp TCCSSCCHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 112233444333332 4667888888899999999999999999999999999998887776 899999999999999
Q ss_pred H-HHHHHHhcCCCccc
Q 011721 203 S-LLQAVRASSRNEKM 217 (479)
Q Consensus 203 ~-l~kAL~l~P~n~~a 217 (479)
. +.+++..+|++...
T Consensus 365 ~~~~~~~~~~~~~~~~ 380 (537)
T 3fp2_A 365 AFFNETKLKFPTLPEV 380 (537)
T ss_dssp HHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHhCCCChHH
Confidence 9 88888888887653
No 39
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.79 E-value=1.3e-17 Score=154.39 Aligned_cols=140 Identities=13% Similarity=0.058 Sum_probs=124.6
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 50 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA-DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 50 p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P-~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+.++.+++.+|.++...|++++|+..|++++.++| .+....+. +|.+|..+|++++|+.+|++++++.|.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~------- 74 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYN--CGVCADNIKKYKEAADYFDIAIKKNYN------- 74 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHTTCS-------
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHH--HHHHHHHhhcHHHHHHHHHHHHHhCcc-------
Confidence 34568899999999999999999999999999998 77654433 788999999999999999999988544
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HHHH-HHHHHHHcCCHHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN-------KQCN-LAICLIRLNRIAE 200 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna-------~a~n-LG~~L~~lGr~dE 200 (479)
+..++.++|.+|..+|++++|+.+|+++++++|+++ ..+. +|.++..+|++++
T Consensus 75 -------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 135 (228)
T 4i17_A 75 -------------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK 135 (228)
T ss_dssp -------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence 445899999999999999999999999999999998 5566 9999999999999
Q ss_pred HHH-HHHHHHhcCC--Cccc
Q 011721 201 AKS-LLQAVRASSR--NEKM 217 (479)
Q Consensus 201 Ai~-l~kAL~l~P~--n~~a 217 (479)
|+. +.+++.++|+ +..+
T Consensus 136 A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 136 AEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccHHH
Confidence 999 9999999998 6543
No 40
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.79 E-value=1e-17 Score=174.93 Aligned_cols=206 Identities=14% Similarity=0.062 Sum_probs=172.3
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+..++...|.....+...+.++...|++++|+.+|.+++..+|++..++..+|.+|...|++++|++.|++++...|++.
T Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 34455667776777778888999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhh------hhhH-HHH
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITL------VQEL-SRI 151 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L------~pe~-~~a 151 (479)
... ..++.+|...|++++|+.+|++++++.|..... .....+.|....... +.+ .|+. ..+
T Consensus 442 ~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 442 LPY--LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA-LLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp HHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHSCCCSGGGHHH
T ss_pred HHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH-HHhhhccccchhhHHHH
Confidence 554 346789999999999999999999987753211 112333444433332 233 4554 789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+..+|.+|...|++++|+.+|+++++++|+++..+. ||.+|...|++++|+. +.+++.++|++..
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 999999999999999999999999999999999888 9999999999999999 9999999998854
No 41
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.79 E-value=2e-19 Score=159.58 Aligned_cols=144 Identities=12% Similarity=0.050 Sum_probs=116.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCH
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRI 105 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~ 105 (479)
|.++...+++++|+..|.+++..+|+.+.+++.||.+|...|+|++|++.|++++.++|+++.++. .+|.+|..+|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~--~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHR--FLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCch
Confidence 445556678899999999998888888888888999999999999999999999999998876554 356788889999
Q ss_pred HHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCHH
Q 011721 106 EEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY-YMKALSLESDKNK 184 (479)
Q Consensus 106 deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~-yrKALeLdPdna~ 184 (479)
++|+.+|+++++++|. ++.++++||.+|..+|++++|... +++|++++|+++.
T Consensus 82 ~~A~~~~~~al~~~p~--------------------------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT--------------------------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 9999999988887544 445888899999989988877665 5889999999888
Q ss_pred HHH-HHHHHHHcCC
Q 011721 185 QCN-LAICLIRLNR 197 (479)
Q Consensus 185 a~n-LG~~L~~lGr 197 (479)
++. ++.++..+|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 887 7888877774
No 42
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.8e-18 Score=189.71 Aligned_cols=159 Identities=10% Similarity=-0.074 Sum_probs=146.3
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 30 LVEKDPSRAISLFWAAI--------NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL--------~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
+..+++++|+..|.+++ ..+|++..+++.+|.+|..+|++++|+..|+++++++|+++..+++ +|.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWY--RAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHH--HHHHHHH
Confidence 67899999999999999 8899999999999999999999999999999999999999876544 5678999
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
+|++++|+..|++|++++|. +..++++||.+|..+|+|++ +.+|++|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~--------------------------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG--------------------------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT--------------------------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 99999999999999998655 33589999999999999999 9999999999999
Q ss_pred CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 182 KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 182 na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+..+++ ||.+|..+|++++|+. +.+++.++|++..+
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 570 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTA 570 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHH
Confidence 998877 9999999999999999 99999999998664
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=2.3e-17 Score=148.81 Aligned_cols=182 Identities=12% Similarity=0.007 Sum_probs=158.1
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHH--hc
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL-DRSEEAIEAIKSFRC--LC 83 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~-GrydEAie~lekal~--l~ 83 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++..+|+...++..+|.++... |++++|+..|++++. ..
T Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (225)
T 2vq2_A 30 SIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY 109 (225)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC
Confidence 355667778887777888888999999999999999999999999999999999999999 999999999999999 44
Q ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC
Q 011721 84 ADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN 163 (479)
Q Consensus 84 P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG 163 (479)
|.+.. ....++.+|...|++++|+.+|+++++..|. +..++..+|.+|..+|
T Consensus 110 ~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 110 PTPYI--ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ--------------------------FPPAFKELARTKMLAG 161 (225)
T ss_dssp SCHHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHT
T ss_pred cchHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CchHHHHHHHHHHHcC
Confidence 44333 3345778999999999999999999988554 3358899999999999
Q ss_pred CHHHHHHHHHHHHHcCC-CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 164 DYESAERYYMKALSLES-DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 164 dydeA~~~yrKALeLdP-dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++++|+.+|+++++++| ++...+. ++.++...|++++|.. +..++..+|++..
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999 9998887 8999999999999999 5555679998754
No 44
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=3.1e-18 Score=167.09 Aligned_cols=204 Identities=14% Similarity=0.062 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGD------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ES 90 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p------~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~ 90 (479)
.|..++.++...|++++|+.+|.+|+.+.+ ....++.++|.+|..+|++++|+.+|++++.+.|.... ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 355667778889999999999999998632 12568999999999999999999999999999875321 22
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 91 LDNVLLELYKRS-KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 91 l~~aLg~lY~kl-Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
....+|.+|... |++++|+.+|++|+++.|.... ......++.++|.+|..+|+|++|+
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~--------------------~~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS--------------------VALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC--------------------hHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 344578999996 9999999999999999775210 0011347899999999999999999
Q ss_pred HHHHHHHHcCCCCHH-------HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH-----HHHH-----HHHHHHH
Q 011721 170 RYYMKALSLESDKNK-------QCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE-----SYAK-----SFEHASL 230 (479)
Q Consensus 170 ~~yrKALeLdPdna~-------a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~-----~~~k-----~~~rA~e 230 (479)
.+|++++++.|++.. .+. +|.|+..+|++++|+. +.+++.++|+...... .... ..++..+
T Consensus 179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 258 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSE 258 (292)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998753 455 9999999999999999 9999999998754321 1111 1234667
Q ss_pred HHHHHHhhhhcCCC
Q 011721 231 MLTELESQSMLQPT 244 (479)
Q Consensus 231 aL~el~~a~~~~P~ 244 (479)
++..+.+.+.++|.
T Consensus 259 A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 259 HCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHTTSSCCCHH
T ss_pred HHHHhccCCccHHH
Confidence 77777777777764
No 45
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.78 E-value=2.8e-17 Score=168.63 Aligned_cols=211 Identities=13% Similarity=0.059 Sum_probs=168.7
Q ss_pred HHHHHhhCCCCCc-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 011721 8 LFHVIHKVPAGDS-------PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 80 (479)
Q Consensus 8 ~~~~v~k~p~~~~-------pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal 80 (479)
+.+++...|.... .+...+.++...|++++|+.+|.+++..+|+ ..++..+|.++...|++++|+..|++++
T Consensus 225 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 3445566666533 3555667788899999999999999999999 8899999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 81 CLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 81 ~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
..+|+++... ..++.+|...|++++|+..|++++.+.|.. ..++.++|.+|.
T Consensus 304 ~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------~~~~~~la~~~~ 355 (537)
T 3fp2_A 304 DLNPEYPPTY--YHRGQMYFILQDYKNAKEDFQKAQSLNPEN--------------------------VYPYIQLACLLY 355 (537)
T ss_dssp HHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------SHHHHHHHHHHH
T ss_pred ccCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHH
Confidence 9999987654 446789999999999999999999986542 247888999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---------HHHHHH----
Q 011721 161 QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---------SYAKSF---- 225 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---------~~~k~~---- 225 (479)
.+|++++|+.+|+++++++|+++..+. +|.+|..+|++++|+. +.+++.+.|++..... ......
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999888777 9999999999999999 8888888877654311 111222
Q ss_pred ------HHHHHHHHHHHhhhhcCCCChh
Q 011721 226 ------EHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 226 ------~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++..+++..+.+++...|.+..
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 5566666667777777887654
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=9.6e-18 Score=157.16 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc-------
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC------- 125 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~------- 125 (479)
.++++.+|.++...|++++|+..|++++..+|+++.... .++.+|...|++++|+..|++++.. +.....
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~--~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYN--RRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHH--HHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHH
Confidence 356789999999999999999999999999999876544 3567999999999999999999994 322110
Q ss_pred ------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 126 ------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 126 ------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
.......|.....+. +.+.|++..++.++|.+|..+|++++|+.+|+++++++|+++..+. +|.++...+++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAA-VDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 001122222222221 3445555566666666666666666666666666666666665554 66333333466
Q ss_pred HHHHH-HHHHHHhcCCCc
Q 011721 199 AEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 199 dEAi~-l~kAL~l~P~n~ 215 (479)
++|+. +.+++.++|++.
T Consensus 159 ~~A~~~~~~a~~~~p~~~ 176 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIY 176 (272)
T ss_dssp HHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHhCccch
Confidence 66666 555666666554
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=4.2e-17 Score=152.33 Aligned_cols=193 Identities=11% Similarity=-0.061 Sum_probs=151.1
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..+...+.++...|++++|+.+|.+++..+|++..++..+|.+|...|++++|+..|++++.++|.+.... ..++.+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH--LNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHH--HHHHHHH
Confidence 34556678888999999999999999999999999999999999999999999999999999999987654 3467899
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcC--------CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACG--------GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~--------~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
...|++++|+.+|++++++.|...... ......|....... +...|++... ..++.++...+++++|+..
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH-FEKSDKEQWG-WNIVEFYLGNISEQTLMER 199 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHSCCCSTH-HHHHHHHTTSSCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHH-HhcCCcchHH-HHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999987643100 01111222221111 2233333333 4577788888999999999
Q ss_pred HHHHHHcCCCC----HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 172 YMKALSLESDK----NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 172 yrKALeLdPdn----a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|++++...|.. ...+. ||.+|..+|++++|+. +.+++.++|++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 99999888754 45566 9999999999999999 8889999997644
No 48
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.76 E-value=8.9e-18 Score=170.56 Aligned_cols=225 Identities=17% Similarity=0.089 Sum_probs=168.8
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..+...+.++...|++++|+.+|.+++..+|+ ..++..+|.++...|++++|+..|++++..+|.+.... ..++.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY--YHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH--HHHHHHH
Confidence 35556677788889999999999999988888 88888899999999999999999999998888876543 3466788
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHh---------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIA---------CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la---------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
...|++++|+..|++++.+.|.... ........|....... +.+.|++..++.++|.+|..+|++++|+.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA-KRKFPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH-HHHSTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHcccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8899999999999999988775211 0112233443333322 45667777888999999999999999999
Q ss_pred HHHHHHHcCCCCHH------HHH-HHHHHHH---cCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHH
Q 011721 171 YYMKALSLESDKNK------QCN-LAICLIR---LNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELE 236 (479)
Q Consensus 171 ~yrKALeLdPdna~------a~n-LG~~L~~---lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~ 236 (479)
+|+++++++|+++. .+. +|.++.. +|++++|+. +.+++..+|++..+... .....++..+++..+.
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999888753 565 9999999 899999999 88888888887654221 1223345556666666
Q ss_pred hhhhcCCCChhh
Q 011721 237 SQSMLQPTDYGE 248 (479)
Q Consensus 237 ~a~~~~P~~~~~ 248 (479)
+++...|++...
T Consensus 474 ~a~~~~~~~~~~ 485 (514)
T 2gw1_A 474 ESADLARTMEEK 485 (514)
T ss_dssp HHHHHCSSHHHH
T ss_pred HHHHhccccHHH
Confidence 777778876653
No 49
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-16 Score=162.52 Aligned_cols=228 Identities=13% Similarity=0.072 Sum_probs=165.8
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC----
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINA---------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD---- 85 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l---------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~---- 85 (479)
...|-..+.++...|++++|+.+|.+|+++ ++....++.++|.+|..+|++++|+.+|++++.+.+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666788999999999999999999874 5667788999999999999999999999999887542
Q ss_pred ----ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC------------CchHHHHhhchhHHHhhhhhHH
Q 011721 86 ----DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG------------KSTKIARSQGRKTQITLVQELS 149 (479)
Q Consensus 86 ----da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~------------k~~~~A~~~g~k~~l~L~pe~~ 149 (479)
.+......+.+.++...+++++|+.+|++|++++|....... .....|+...++ .+.++|++.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~-al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ-AIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH-HHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH-HhhcCCcch
Confidence 233333333333344456799999999999999886432100 001112212222 167889999
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----
Q 011721 150 RISGNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---- 219 (479)
Q Consensus 150 ~al~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---- 219 (479)
.++.++|.++.. .|++++|+.+|++++.++|++..++. ||.+|...|++++|+. +.+++..+|+++.+..
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 999999877665 46889999999999999999999887 9999999999999999 9999999999876421
Q ss_pred HHH------------------HHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 220 SYA------------------KSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 220 ~~~------------------k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
.+. .......+++..+.+++..+|.+..
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 335 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR 335 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh
Confidence 110 1122344566666677777776554
No 50
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.75 E-value=8.2e-17 Score=152.54 Aligned_cols=190 Identities=12% Similarity=0.014 Sum_probs=148.9
Q ss_pred HHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh
Q 011721 46 INAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA 124 (479)
Q Consensus 46 L~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la 124 (479)
....+....+++.+|..+...|++++|+..|++++..+|+++. ......+|.+|..+|++++|+..|+++++++|..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~-- 85 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID-- 85 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--
Confidence 3467788899999999999999999999999999999999832 1233457789999999999999999999997753
Q ss_pred cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCHHHH----------
Q 011721 125 CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ--------QNDYESAERYYMKALSLESDKNKQC---------- 186 (479)
Q Consensus 125 ~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~--------lGdydeA~~~yrKALeLdPdna~a~---------- 186 (479)
+....+++++|.+|.. +|++++|+..|++++++.|++..+.
T Consensus 86 ---------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 86 ---------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred ---------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 2234689999999999 9999999999999999999986332
Q ss_pred -------H-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH-------HHHH---------HHHHHHHHHHHHHhhhhc
Q 011721 187 -------N-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE-------SYAK---------SFEHASLMLTELESQSML 241 (479)
Q Consensus 187 -------n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~-------~~~k---------~~~rA~eaL~el~~a~~~ 241 (479)
. +|.+|..+|++++|+. +.+++...|++..... .+.. ..++..+++..+.+.+..
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4 8999999999999999 9999999998654211 1110 115556677777777777
Q ss_pred CCCChhhHHHHHhhhhh
Q 011721 242 QPTDYGEDKRKKILSSC 258 (479)
Q Consensus 242 ~P~~~~~~~~~~~~~~~ 258 (479)
.|++........++..+
T Consensus 225 ~p~~~~~~~a~~~l~~~ 241 (261)
T 3qky_A 225 FPDSPLLRTAEELYTRA 241 (261)
T ss_dssp CTTCTHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHH
Confidence 88877544444444444
No 51
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.7e-17 Score=164.12 Aligned_cols=206 Identities=16% Similarity=0.090 Sum_probs=157.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|. ...+...+.++...|++++|+.+|.+++..+|.+..++..+|.++...|++++|+..|++++..+|.+
T Consensus 259 ~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 259 DIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337 (514)
T ss_dssp HHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC
T ss_pred HHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh
Confidence 34555666676 55666667777788888888888888888888878888888888888888888888888888888887
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHH------H
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSR------I 151 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~------a 151 (479)
.... ..++.+|...|++++|+..|++++.+.|..... .......|....... +.+.|++.. +
T Consensus 338 ~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~ 414 (514)
T 2gw1_A 338 IFPY--IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA-IELENKLDGIYVGIAP 414 (514)
T ss_dssp SHHH--HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTSSSCSSCSHH
T ss_pred HHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhhhccchHHHHHHH
Confidence 6543 335677888888888888888888876642110 012222333322222 344555533 8
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 152 SGNLAWAYLQ---QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 152 l~nLG~ay~~---lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.++|.+|.. +|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++.++|++..
T Consensus 415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 9999999999 99999999999999999999998877 9999999999999999 9999999998755
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.75 E-value=1.9e-17 Score=173.67 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=154.9
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---------CChHHHHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL---------DRSEEAIEAI 76 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~---------GrydEAie~l 76 (479)
..+.+++...|.....+...+.+++..|++++|+.+|.+++.++|+ ..++.++|.+|... |++++|++.|
T Consensus 124 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~ 202 (474)
T 4abn_A 124 VLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202 (474)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHH
Confidence 3466778889988888889999999999999999999999999999 68999999999999 9999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhH
Q 011721 77 KSFRCLCADDSQESLDNVLLELYKRS--------KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQEL 148 (479)
Q Consensus 77 ekal~l~P~da~~~l~~aLg~lY~kl--------Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~ 148 (479)
++++.++|+++..+. .++.+|..+ |++++|+.+|++|++++|.. +++
T Consensus 203 ~~al~~~p~~~~~~~--~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----------------------~~~ 257 (474)
T 4abn_A 203 KLAVQMDVLDGRSWY--ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA-----------------------SSN 257 (474)
T ss_dssp HHHHHHCTTCHHHHH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG-----------------------GGC
T ss_pred HHHHHhCCCCHHHHH--HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc-----------------------ccC
Confidence 999999999976554 467888888 99999999999999986620 134
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
+.+++++|.+|..+|+|++|+.+|++|++++|++..++. +|.++..+|++++|+.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999998887 9999999999999988
No 53
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=2.1e-17 Score=143.00 Aligned_cols=120 Identities=8% Similarity=0.053 Sum_probs=103.8
Q ss_pred HHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh
Q 011721 45 AINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA 124 (479)
Q Consensus 45 AL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la 124 (479)
+..++|+...++.++|.+|.+.|+|++|++.|++++.++|.++..+.+ +|.+|..+|++++|+..|+++|+++|.
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~--- 79 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSN--RAACLTKLMEFQRALDDCDTCIRLDSK--- 79 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HhhHHHhhccHHHHHHHHHHHHHhhhh---
Confidence 345788888999999999999999999999999999999998765543 567899999999999999999988554
Q ss_pred cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHH
Q 011721 125 CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICL 192 (479)
Q Consensus 125 ~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L 192 (479)
+..+++++|.+|..+|++++|+.+|++|++++|++..++. |+.|+
T Consensus 80 -----------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 80 -----------------------FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred -----------------------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 3458999999999999999999999999999999998877 88774
No 54
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.74 E-value=1.5e-17 Score=149.62 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=136.1
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
...++..+..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...| ++.... .++.+
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~--~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKS--LIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHH--HHHHH
Confidence 345667778889999999999999999999999999999999999999999999999999999999 764332 22222
Q ss_pred -HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 99 -YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 99 -Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
+...+...+|+..|+++++++|. ++.+++++|.+|..+|++++|+.+|+++++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPD--------------------------NFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhhcccchHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22333445688999998887544 456999999999999999999999999999
Q ss_pred cCCCC--HHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 178 LESDK--NKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 178 LdPdn--a~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
++|+. +.++. ||.+|..+|++++|+. +.++|.
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99986 44666 9999999999999999 888764
No 55
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.74 E-value=3e-16 Score=146.80 Aligned_cols=187 Identities=12% Similarity=0.006 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH-HHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES-LDNVLL 96 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~---~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~-l~~aLg 96 (479)
.+...+..++..|++++|+..|.+++...|+. ..+++.+|.+|...|++++|+..|++++..+|++.... ....+|
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34556678899999999999999999987764 47899999999999999999999999999999986421 122345
Q ss_pred HHHHH------------------cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH
Q 011721 97 ELYKR------------------SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA 158 (479)
Q Consensus 97 ~lY~k------------------lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a 158 (479)
.+|.. .|++++|+..|+++++.+|..... ..+.. . ...+..........+|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a-----~~a~~--~--l~~~~~~~~~~~~~~a~~ 156 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT-----TDATK--R--LVFLKDRLAKYEYSVAEY 156 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH-----HHHHH--H--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH-----HHHHH--H--HHHHHHHHHHHHHHHHHH
Confidence 55654 689999999999999998874310 01110 0 011223334566889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 159 YLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|..+|+|++|+..|+++++..|+++ .++. +|.+|..+|++++|+. +.+.+...|++..
T Consensus 157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 9999999999999999999999987 4566 9999999999999999 6666777777654
No 56
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.74 E-value=2.6e-18 Score=152.33 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=113.4
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhc
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g 137 (479)
.||.++..+|++++|++.|++++..+|+++...+ .+|.+|..+|++++|+.+|+++++++|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~--~la~~y~~~~~~~~A~~~~~~al~~~p~---------------- 63 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGF--YFAKLYYEAKEYDLAKKYICTYINVQER---------------- 63 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------
Confidence 4789999999999999999999998887665443 4679999999999999999999998554
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-H-HHHHHhcCCC
Q 011721 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-L-LQAVRASSRN 214 (479)
Q Consensus 138 ~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l-~kAL~l~P~n 214 (479)
++.++++||.+|..+|++++|+.+|++|++++|+++.++. ||.+|..+|++++|+. + .+++.++|++
T Consensus 64 ----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 64 ----------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred ----------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 4569999999999999999999999999999999999887 9999999999998776 4 6899999998
Q ss_pred cc
Q 011721 215 EK 216 (479)
Q Consensus 215 ~~ 216 (479)
+.
T Consensus 134 ~~ 135 (150)
T 4ga2_A 134 PA 135 (150)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=1.9e-16 Score=155.05 Aligned_cols=176 Identities=11% Similarity=0.015 Sum_probs=142.8
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCChHH
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLV-------EKDP-------SRAISLFWAAIN-AGDRVDSALKDMAVVMKQLDRSEE 71 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~-------~gd~-------eeAi~~y~kAL~-l~p~~~~Al~~LA~vL~~~GrydE 71 (479)
.+.+++...|.....+...+.++.. .|++ ++|+..|++|+. ++|++..++..+|.++...|++++
T Consensus 38 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~ 117 (308)
T 2ond_A 38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 117 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 5667777888877777777666543 4775 999999999999 799999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHH
Q 011721 72 AIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSR 150 (479)
Q Consensus 72 Aie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~ 150 (479)
|++.|++++.+.|.++. .+ ..++.++.+.|++++|+..|++|+++.|.. ..
T Consensus 118 A~~~~~~al~~~p~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--------------------------~~ 169 (308)
T 2ond_A 118 VHSIYNRLLAIEDIDPTLVY--IQYMKFARRAEGIKSGRMIFKKAREDARTR--------------------------HH 169 (308)
T ss_dssp HHHHHHHHHTSSSSCTHHHH--HHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--------------------------TH
T ss_pred HHHHHHHHHhccccCccHHH--HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--------------------------HH
Confidence 99999999999999875 33 345678899999999999999999986532 12
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 151 ISGNLAWAYL-QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 151 al~nLG~ay~-~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
++...|.+.. .+|++++|+.+|++|++++|+++..+. +|.++..+|++++|+. +.+++..
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4444444433 268888888888888888888887777 8888888888888888 7788875
No 58
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.9e-16 Score=155.71 Aligned_cols=215 Identities=12% Similarity=0.031 Sum_probs=156.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHc
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--CADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--~P~da~~~l~~aLg~lY~kl 102 (479)
...+++..|+++.|+..++. .+|....++..++..+...|++++|++.|++++.. +|+++... ..+|.+|...
T Consensus 40 l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~--~~la~~~~~~ 114 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL--LMAASIYFYD 114 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH--HHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHC
Confidence 45678999999999988865 25556788899999999999999999999999876 59887553 4567899999
Q ss_pred CCHHHHHHHHHHHHHhchhHHh------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHH--HHHHHcCCHHHHHHHHHH
Q 011721 103 KRIEEEIELLKRKLKKTEEVIA------CGGKSTKIARSQGRKTQITLVQELSRISGNLA--WAYLQQNDYESAERYYMK 174 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~~la------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG--~ay~~lGdydeA~~~yrK 174 (479)
|++++|+..|++ .-++.... ........|....+.. +.+.|+...+....| .++...|++++|+.+|++
T Consensus 115 g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~-~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 115 QNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKM-QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp TCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999998 11111110 0112333444433332 355666543333333 333355999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHH-HHHHHHhhhhcCCCChh
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASL-MLTELESQSMLQPTDYG 247 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~e-aL~el~~a~~~~P~~~~ 247 (479)
+++..|+++..++ +|.+|..+|++++|+. +.+++.++|+++.+... .....++..+ +...+++.+.++|++..
T Consensus 192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 9999999999888 9999999999999999 99999999999775321 1122333333 34555667777898775
No 59
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=5e-17 Score=172.33 Aligned_cols=157 Identities=17% Similarity=0.071 Sum_probs=127.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
.|++++|+.+|+++++.+|++..++..+|.+|...|++++|++.|++++.++|+++.... .++.+|..+|++++|+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA--RLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHH--HHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHCCCHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999876544 467899999999999999
Q ss_pred HHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHH
Q 011721 112 LKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAI 190 (479)
Q Consensus 112 lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~ 190 (479)
|+++++++|. +..+++++|.+|..+|++++|+.+|+++++++|++..++. ||.
T Consensus 80 ~~~al~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 80 LQQASDAAPE--------------------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999998554 3458999999999999999999999999999999998877 999
Q ss_pred HHHHc---CCHHHHHH-HHHHHHhcCCCcc
Q 011721 191 CLIRL---NRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 191 ~L~~l---Gr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++..+ |++++|+. +.+++..+|++..
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 99999 99999999 9999999998754
No 60
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.73 E-value=4.3e-17 Score=159.34 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=141.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV 94 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a 94 (479)
.|....++...+..++..|++++|+..|++++..+|++..+++.||.+|..+|++++|+..|++++..+|+.... ...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~--~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ--GLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH--HHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH--HHH
Confidence 465556777777888889999999999999999999999999999999999999999999999999999954322 223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
++..+...|+.++|+..|++++.++|. +..++++||.+|..+|++++|+..|++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~--------------------------~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE--------------------------DAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc--------------------------cHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 345577888889999999999887544 456899999999999999999999999
Q ss_pred HHHcCCCC--HHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 175 ALSLESDK--NKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 175 ALeLdPdn--a~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
++.++|++ ..++. ||.+|..+|+.++|+. +.+++.
T Consensus 245 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 245 HLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999998 66776 9999999999999999 888775
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=1.9e-16 Score=147.84 Aligned_cols=158 Identities=11% Similarity=0.004 Sum_probs=136.0
Q ss_pred HcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 31 VEKDPSRAISLFWAAINAG----DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~----p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
..+++++|+..|.+++... |....++..+|.++...|++++|+..|++++.++|+++... ..+|.+|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF--NYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHHccCHH
Confidence 3578999999999999873 45678899999999999999999999999999999987654 34678999999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~ 186 (479)
+|+.+|++++.+.|. +..++.++|.+|..+|++++|+.+|+++++++|++....
T Consensus 95 ~A~~~~~~al~~~~~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT--------------------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148 (275)
T ss_dssp HHHHHHHHHHHHCTT--------------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhcCcc--------------------------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999998654 234889999999999999999999999999999998766
Q ss_pred HHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 187 NLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 187 nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.+..++...|++++|+. +.+++...|++..
T Consensus 149 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (275)
T 1xnf_A 149 LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 179 (275)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCcchH
Confidence 63334467799999999 7788888887643
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.4e-16 Score=150.62 Aligned_cols=174 Identities=21% Similarity=0.290 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-----CCCh
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-----ADDS 87 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~-----P~da 87 (479)
.+...+.+++..|++++|+.+|.+++.. .+....++..+|.+|...|++++|+..|++++.+. ++++
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4556677888999999999999999984 56667889999999999999999999999999874 3333
Q ss_pred H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 88 Q-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 88 ~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
. ......++.+|...|++++|+.+|++++.+...... .-.+....++.++|.+|..+|+++
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG------------------KDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC------------------CCChHHHHHHHHHHHHHHHcCCHH
Confidence 2 334455789999999999999999999998533211 001334568899999999999999
Q ss_pred HHHHHHHHHHHc--------CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 167 SAERYYMKALSL--------ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 167 eA~~~yrKALeL--------dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
+|+.+|++++++ .|.....+. ||.+|..+|++++|+. +.+++.+.|
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999998 555556666 9999999999999999 888887643
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.71 E-value=2.3e-16 Score=157.72 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=148.6
Q ss_pred HHHHHHhhCCCCCcHHHH------HHHHHHHcCCHHHHHHHHHHHHHc---CCC---cHHHHHHHHHHHHHCCChHHHHH
Q 011721 7 ELFHVIHKVPAGDSPYVR------AKRAQLVEKDPSRAISLFWAAINA---GDR---VDSALKDMAVVMKQLDRSEEAIE 74 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~------a~~~~L~~gd~eeAi~~y~kAL~l---~p~---~~~Al~~LA~vL~~~GrydEAie 74 (479)
++++.+...|.....+.. .+.++...|++++|+.+|.+|+.. .++ ...++..+|.+|...|++++|+.
T Consensus 85 ~~~~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~ 164 (383)
T 3ulq_A 85 DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMD 164 (383)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344444444443334443 667788899999999999999985 222 45789999999999999999999
Q ss_pred HHHHHHHhcCCChH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHH
Q 011721 75 AIKSFRCLCADDSQ-----ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS 149 (479)
Q Consensus 75 ~lekal~l~P~da~-----~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~ 149 (479)
.|++++.+.+.... ....+.+|.+|..+|++++|+.+|++|+++.+.... .+...
T Consensus 165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------~~~~~ 224 (383)
T 3ulq_A 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--------------------PQLMG 224 (383)
T ss_dssp HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------HHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC--------------------hHHHH
Confidence 99999998765432 233455789999999999999999999998665311 11223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSL-----E-SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeL-----d-Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
.++++||.+|..+|++++|+.+|++|+++ + |..+.++. ||.+|..+|++++|+. +.+++.+.+.
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999994 5 66667776 9999999999999999 8899887653
No 64
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.71 E-value=1e-16 Score=175.77 Aligned_cols=160 Identities=13% Similarity=-0.033 Sum_probs=140.3
Q ss_pred hhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHH
Q 011721 13 HKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLD 92 (479)
Q Consensus 13 ~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~ 92 (479)
...|.....+...+.+++..|++++|+..|.++++.+|++..+++++|.+|..+|++++|++.|+++++++|+++..++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~- 505 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKL- 505 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHH-
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-
Confidence 5668888888888899999999999999999999999999999999999999999999999999999999999987654
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
.+|.+|..+|++++ +..|++|++++|. +..++++||.+|..+|++++|+.+|
T Consensus 506 -~lg~~~~~~g~~~~-~~~~~~al~~~P~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 506 -ALAATAELAGNTDE-HKFYQTVWSTNDG--------------------------VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp -HHHHHHHHHTCCCT-TCHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHHHcCChHH-HHHHHHHHHhCCc--------------------------hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46789999999999 9999999998654 4459999999999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHH
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEA 201 (479)
++|++++|++..++. +|.+|+..|+.++|
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC-------C
T ss_pred HhhcccCcccHHHHHHHHHHHHccCCCCCC
Confidence 999999999998877 99999887774444
No 65
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.71 E-value=3.2e-17 Score=147.92 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
..|++++.++|++..+++.+|.++.+.|++++|+..|++++.++|+++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~-------------------------------- 70 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV-------------------------------- 70 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--------------------------------
Confidence 345556666777777777777777777777777777777777766654
Q ss_pred hhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 120 EEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 120 p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
.+|++||.+|..+|+|++|+.+|++|++++|+++.++. ||.+|..+|++
T Consensus 71 ------------------------------~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 71 ------------------------------DYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred ------------------------------HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 36677777777777777777777777777777776665 77777777777
Q ss_pred HHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 011721 199 AEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTEL 235 (479)
Q Consensus 199 dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el 235 (479)
++|+. +.+++.+.|+.. .-++|.++|..+
T Consensus 121 ~eA~~~~~~al~l~~~~~--------~~~~A~~ll~~l 150 (151)
T 3gyz_A 121 LKAKECFELVIQHSNDEK--------LKIKAQSYLDAI 150 (151)
T ss_dssp HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHH--------HHHHHHHHHHhh
Confidence 77777 777777777542 234555555543
No 66
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.70 E-value=5.1e-16 Score=144.03 Aligned_cols=166 Identities=13% Similarity=0.047 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLD--------------NVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~--------------~aLg~lY~klGr~deAie~lekALkl 118 (479)
.+.++..|..+...|++++|+..|++++.++|+++...+. +.+|.+|..+|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999998765543 11678999999999999999999998
Q ss_pred chhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCC
Q 011721 119 TEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNR 197 (479)
Q Consensus 119 ~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr 197 (479)
+|. +..+++++|.+|..+|++++|+.+|+++++++|+++.+++ ||.+|..+|+
T Consensus 84 ~p~--------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 84 APN--------------------------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp CTT--------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 654 4459999999999999999999999999999999999887 9999988775
Q ss_pred HH--HHHH-HHHHHHhcCCCcc-chH---HHHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 198 IA--EAKS-LLQAVRASSRNEK-MDE---SYAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 198 ~d--EAi~-l~kAL~l~P~n~~-a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
.+ ++.. +.+++ .|.... +.. ......++..+++..+++++.++|.+.
T Consensus 138 ~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 138 QEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 44 4444 33443 332211 110 111223566788888889999999743
No 67
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=5.8e-16 Score=157.23 Aligned_cols=230 Identities=8% Similarity=-0.060 Sum_probs=166.0
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHC--CChHHHHHHHHHHHHhcCC
Q 011721 16 PAGDSPYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQL--DRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~--GrydEAie~lekal~l~P~ 85 (479)
|.....|...+.++...|++++|+.+|.+++.+ .+....++.++|.++... ++|++|+++|++++.++|+
T Consensus 91 ~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~ 170 (472)
T 4g1t_A 91 IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170 (472)
T ss_dssp TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence 433456777888999999999999999999874 334677888888877664 5799999999999999999
Q ss_pred ChHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhchhHHhc----------CC---CchHHHHhhchhHHHhhhhhHHHH
Q 011721 86 DSQESLDNVLL-ELYKRSKRIEEEIELLKRKLKKTEEVIAC----------GG---KSTKIARSQGRKTQITLVQELSRI 151 (479)
Q Consensus 86 da~~~l~~aLg-~lY~klGr~deAie~lekALkl~p~~la~----------~~---k~~~~A~~~g~k~~l~L~pe~~~a 151 (479)
++......+.+ ..+...|++++|++.|++|++++|..... .. .....|.....+. +.+.|....+
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a-l~~~~~~~~~ 249 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA-LEKAPGVTDV 249 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHH-HHHCSSCHHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHhCccHHHH
Confidence 98766554422 23556788999999999999998863210 00 1111233222222 5678888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc-------------------CCHHHHHH-HHHHHHh
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRL-------------------NRIAEAKS-LLQAVRA 210 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~l-------------------Gr~dEAi~-l~kAL~l 210 (479)
+.++|.+|..+|++++|+.+|++|++++|+++.+++ ||.+|..+ +.+++|+. +.+++.+
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998877 88887643 34677888 7788888
Q ss_pred cCCCccchHH---HHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 211 SSRNEKMDES---YAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 211 ~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
+|.+...... .....++..+++..+.+++..+|.+.
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 8877664221 11222334445555555666666543
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=5.5e-16 Score=146.56 Aligned_cols=176 Identities=19% Similarity=0.171 Sum_probs=142.3
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-----CCC
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-----ADD 86 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~-----P~d 86 (479)
..+...+.++...|++++|+.+|.+++.. .+....++..+|.+|...|++++|+.+|++++.+. +++
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34556777888999999999999999986 34566789999999999999999999999999875 443
Q ss_pred hH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 87 SQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 87 a~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
+. ......++.+|...|++++|+.+|++++.+...... ...+....++.++|.+|..+|++
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~g~~ 211 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG------------------PDDPNVAKTKNNLASCYLKQGKF 211 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC------------------TTCHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHHHHcCCH
Confidence 32 233455789999999999999999999998432110 00234456899999999999999
Q ss_pred HHHHHHHHHHHHcC-------------------------------------------------CCCHHHHH-HHHHHHHc
Q 011721 166 ESAERYYMKALSLE-------------------------------------------------SDKNKQCN-LAICLIRL 195 (479)
Q Consensus 166 deA~~~yrKALeLd-------------------------------------------------Pdna~a~n-LG~~L~~l 195 (479)
++|+.+|++++++. |....++. ||.+|..+
T Consensus 212 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~ 291 (311)
T 3nf1_A 212 KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ 291 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC
Confidence 99999999999853 44455666 99999999
Q ss_pred CCHHHHHH-HHHHHHhcCC
Q 011721 196 NRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 196 Gr~dEAi~-l~kAL~l~P~ 213 (479)
|++++|+. +.+++.+.|+
T Consensus 292 g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 292 GKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp TCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 99999999 8899998875
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.2e-15 Score=149.28 Aligned_cols=204 Identities=9% Similarity=0.011 Sum_probs=164.6
Q ss_pred HHHHHHh-hCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 7 ELFHVIH-KVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDS-ALKDMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 7 ~~~~~v~-k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~-Al~~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
.+..++. -.|.....+...+.++...|++++|+..|++++..+|.+.. ++..+|.++...|++++|+..|++++..+|
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3455666 36665566777788888899999999999999999998876 899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC
Q 011721 85 DDSQESLDNVLLEL-YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN 163 (479)
Q Consensus 85 ~da~~~l~~aLg~l-Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG 163 (479)
......+.. +.+ +...|++++|+..|+++++++|. ++.++.++|.++..+|
T Consensus 166 ~~~~~~~~~--a~~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~~~~~~~~~g 217 (308)
T 2ond_A 166 TRHHVYVTA--ALMEYYCSKDKSVAFKIFELGLKKYGD--------------------------IPEYVLAYIDYLSHLN 217 (308)
T ss_dssp CCTHHHHHH--HHHHHHTSCCHHHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHHCC
Confidence 886655433 222 22379999999999999998554 3458999999999999
Q ss_pred CHHHHHHHHHHHHHc---CCC-CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHh
Q 011721 164 DYESAERYYMKALSL---ESD-KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELES 237 (479)
Q Consensus 164 dydeA~~~yrKALeL---dPd-na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~ 237 (479)
++++|+.+|++|++. .|+ ....+. ++.++...|++++|.. +.+++...|++.... ...++....+
T Consensus 218 ~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~---------~~~~~~~r~~ 288 (308)
T 2ond_A 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK---------ETALLVDRYK 288 (308)
T ss_dssp CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC---------HHHHHHTTTC
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccc---------hHHHHHHHHH
Confidence 999999999999996 664 567777 8999999999999999 889999999876411 1133344445
Q ss_pred hhhcCCCChh
Q 011721 238 QSMLQPTDYG 247 (479)
Q Consensus 238 a~~~~P~~~~ 247 (479)
.+.+.|.+..
T Consensus 289 ~l~~~P~~~~ 298 (308)
T 2ond_A 289 FMDLYPCSAS 298 (308)
T ss_dssp BTTBCSSCHH
T ss_pred hcccCCCCHH
Confidence 6667787654
No 70
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.69 E-value=8.1e-16 Score=142.69 Aligned_cols=173 Identities=20% Similarity=0.152 Sum_probs=137.8
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-----CCC
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-----ADD 86 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~-----P~d 86 (479)
..+...+.++...|++++|+.+|.+++.. .|....++..+|.+|...|++++|+.+|++++.+. +++
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34556778888999999999999999976 35566789999999999999999999999999873 333
Q ss_pred hH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 87 SQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 87 a~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
+. ......++.+|..+|++++|+.+|++++.+...... .-.|....++.++|.+|..+|++
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG------------------PDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC------------------TTCHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHHHHcCCH
Confidence 32 233455788999999999999999999998432210 00234456899999999999999
Q ss_pred HHHHHHHHHHHHcC-------------------------------------------------CCCHHHHH-HHHHHHHc
Q 011721 166 ESAERYYMKALSLE-------------------------------------------------SDKNKQCN-LAICLIRL 195 (479)
Q Consensus 166 deA~~~yrKALeLd-------------------------------------------------Pdna~a~n-LG~~L~~l 195 (479)
++|+.+|++++++. |+....+. ||.+|..+
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 265 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQ 265 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999972 23334555 99999999
Q ss_pred CCHHHHHH-HHHHHHh
Q 011721 196 NRIAEAKS-LLQAVRA 210 (479)
Q Consensus 196 Gr~dEAi~-l~kAL~l 210 (479)
|++++|+. +.+++.+
T Consensus 266 g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 266 GKLEAAHTLEDCASRN 281 (283)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 99999999 7778764
No 71
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.68 E-value=2.7e-16 Score=139.44 Aligned_cols=132 Identities=19% Similarity=0.140 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
..|++++..+|++..+++.+|.++...|++++|+..|++++.++|.++
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------- 55 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS-------------------------------- 55 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--------------------------------
Confidence 457777778887777888888888888888888888887777777653
Q ss_pred hhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 120 EEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 120 p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
.+++++|.+|..+|+|++|+.+|++|++++|+++.++. ||.+|..+|++
T Consensus 56 ------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 56 ------------------------------RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred ------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 25677788888888888888888888888888877665 88888888888
Q ss_pred HHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHh
Q 011721 199 AEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELES 237 (479)
Q Consensus 199 dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~ 237 (479)
++|+. +.+++.++|+++.. .....++..+|..+..
T Consensus 106 ~~A~~~~~~al~~~p~~~~~----~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 106 AEAESGLFLAQELIANXPEF----XELSTRVSSMLEAIKL 141 (148)
T ss_dssp HHHHHHHHHHHHHHTTCGGG----HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHCcCCCcc----hHHHHHHHHHHHHHHh
Confidence 88888 77788888776541 1223455555555443
No 72
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=5.8e-15 Score=140.09 Aligned_cols=186 Identities=17% Similarity=0.072 Sum_probs=118.6
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 16 PAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~----~GrydEAie~lekal~l~P~da~~~l 91 (479)
|.....+...+.+++..+++++|+.+|++++. +++..+++.||.+|.. .+++++|+..|++++..+ ++...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~- 77 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC- 77 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH-
Confidence 33445666778888889999999999999999 5667899999999999 999999999999999885 44333
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhchhH-H-----h-cC----CCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 92 DNVLLELYKR----SKRIEEEIELLKRKLKKTEEV-I-----A-CG----GKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 92 ~~aLg~lY~k----lGr~deAie~lekALkl~p~~-l-----a-~~----~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
..++.+|.. .|++++|+.+|+++++..... . . .. ......|.....+. +...+..++++||
T Consensus 78 -~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a---~~~~~~~a~~~lg 153 (273)
T 1ouv_A 78 -HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA---CDLNDGDGCTILG 153 (273)
T ss_dssp -HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH---HHTTCHHHHHHHH
T ss_pred -HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHH---HhcCcHHHHHHHH
Confidence 346788999 999999999999999873110 0 0 00 11122222222211 1122334555555
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcC
Q 011721 157 WAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 157 ~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P 212 (479)
.+|.. .+++++|+.+|++|++++ ++.++. ||.+|.. .+++++|+. +.+++...|
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 55555 555555555555555542 333333 5555555 555555555 555555443
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.67 E-value=2.2e-15 Score=150.90 Aligned_cols=171 Identities=13% Similarity=0.050 Sum_probs=141.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---C---CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh-----HHHHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAG---D---RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS-----QESLD 92 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~---p---~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da-----~~~l~ 92 (479)
..+..+...|++++|+.+|.+|+... + ....++..+|.+|...|++++|+..+++++.+.+... .....
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34566788999999999999999752 2 2456889999999999999999999999998876532 13344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
+.+|.+|..+|++++|+++|++|+.+.+.... .+....++.+||.+|..+|++++|+.+|
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQN--------------------DRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55789999999999999999999998543210 1122358999999999999999999999
Q ss_pred HHHHH-----cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 173 MKALS-----LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 173 rKALe-----LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
++|++ .+|..+.++. ||.+|..+|++++|+. +.+++.+.+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 99999 7787777776 9999999999999999 89999987653
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.66 E-value=1.5e-15 Score=132.15 Aligned_cols=138 Identities=19% Similarity=0.196 Sum_probs=123.1
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
...++..+|.++...|++++|+..|++++..+|.+.... ..++.+|...|++++|+.+|++++.+.|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------- 74 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVA--LHLGIAYVKTGAVDRGTELLERSLADAPD---------- 74 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------
Confidence 345788899999999999999999999999999886543 44678999999999999999999988543
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
+..++.++|.+|...|++++|+.+|++++.++|++...+. +|.++..+|++++|+. +.+++.
T Consensus 75 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 75 ----------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp ----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 3358899999999999999999999999999999998887 9999999999999999 889999
Q ss_pred hcCCCccc
Q 011721 210 ASSRNEKM 217 (479)
Q Consensus 210 l~P~n~~a 217 (479)
..|++...
T Consensus 139 ~~~~~~~~ 146 (186)
T 3as5_A 139 LRPNEGKV 146 (186)
T ss_dssp HCTTCHHH
T ss_pred cCccchHH
Confidence 99988653
No 75
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=9.1e-15 Score=138.76 Aligned_cols=188 Identities=14% Similarity=0.095 Sum_probs=152.7
Q ss_pred CCCCcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhcCCCh
Q 011721 16 PAGDSPYVRAKRAQLV----EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~----~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~----~GrydEAie~lekal~l~P~da 87 (479)
|.....+...+.++.. .+++++|+.+|.+++..+ +..+++.||.+|.. .+++++|+..|++++..+ ++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence 5555677778888898 999999999999999986 67899999999999 999999999999999874 44
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhHH------h-cC----CCchHHHHhhchhHHHhhhhhHHHHH
Q 011721 88 QESLDNVLLELYKR----SKRIEEEIELLKRKLKKTEEVI------A-CG----GKSTKIARSQGRKTQITLVQELSRIS 152 (479)
Q Consensus 88 ~~~l~~aLg~lY~k----lGr~deAie~lekALkl~p~~l------a-~~----~k~~~~A~~~g~k~~l~L~pe~~~al 152 (479)
... ..++.+|.. .|++++|+.+|++++++.+... . .. ......|.....+. +...++.++
T Consensus 111 ~a~--~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a---~~~~~~~a~ 185 (273)
T 1ouv_A 111 EGC--ASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKA---CDLKDSPGC 185 (273)
T ss_dssp HHH--HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---HHTTCHHHH
T ss_pred cHH--HHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---HHCCCHHHH
Confidence 433 446789999 9999999999999999864321 0 01 23334454444332 233567899
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcCCC
Q 011721 153 GNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 153 ~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P~n 214 (479)
++||.+|.. .+++++|+.+|+++++++| +.++. ||.+|.. .+++++|+. +.+++.+.|++
T Consensus 186 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 186 FNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999999 9999999999999999977 66665 9999999 999999999 89999998853
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.66 E-value=1e-15 Score=141.96 Aligned_cols=165 Identities=22% Similarity=0.299 Sum_probs=134.0
Q ss_pred HHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-----CCChH-HHHHHHH
Q 011721 30 LVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-----ADDSQ-ESLDNVL 95 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~-----P~da~-~~l~~aL 95 (479)
...+++++|+.+|++|+.. .|....++..+|.+|...|++++|+..|++++.+. ++++. ......+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4467888888888888872 25567889999999999999999999999999885 44332 3344557
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+.+|..+|++++|+.+|++++.+....... -.|....++.++|.+|..+|++++|+.+|+++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGK------------------FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCC------------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999985432210 02345579999999999999999999999999
Q ss_pred HHc--------CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 176 LSL--------ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 176 LeL--------dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
+++ .|....++. ||.+|..+|++++|+. +.+++.+.+
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999 565566676 9999999999999999 888888754
No 77
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.66 E-value=1.4e-15 Score=149.42 Aligned_cols=174 Identities=14% Similarity=0.195 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC--hH--HH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD--SQ--ES 90 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~------~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d--a~--~~ 90 (479)
-|..++.++...|++++|+.+|.+++.+.+. ...++.++|.+|..+|++++|+.+|++++.+.+.. .. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455667788899999999999999985432 24578899999999999999999999999886532 21 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
....++.+|.. |++++|+.+|++|+.+.+.... ......++.++|.+|..+|+|++|+.
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~--------------------~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER--------------------LRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC--------------------hhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33457788988 9999999999999999765210 01123589999999999999999999
Q ss_pred HHHHHHHcCCCCH------HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 171 YYMKALSLESDKN------KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 171 ~yrKALeLdPdna------~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|++++++.|++. ..+. +|.++..+|++++|+. +.+++ ++|....
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 9999999976552 2445 9999999999999999 89999 9997654
No 78
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=149.44 Aligned_cols=194 Identities=15% Similarity=0.080 Sum_probs=140.4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC---Ch-HHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD---DS-QESL 91 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~----~Al~~LA~vL~~~GrydEAie~lekal~l~P~---da-~~~l 91 (479)
..+...+..++..|++++|+.+|.+++...|.+. .++..+|.++...|++++|+..|++++.+.+. .+ ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3456677888889999999999999999888763 57888999999999999999999988776321 11 1333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH-------hcC--------CCc--------------------hHHHHhh
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVI-------ACG--------GKS--------------------TKIARSQ 136 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~l-------a~~--------~k~--------------------~~~A~~~ 136 (479)
...++.+|...|++++|+.+|++++.+.+... ... ... ...|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 45577889999999999999999998876521 000 011 2222222
Q ss_pred chhHHHhh------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHH-HHHHHHHcCCHHHHHH
Q 011721 137 GRKTQITL------VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK------QCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 137 g~k~~l~L------~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~------a~n-LG~~L~~lGr~dEAi~ 203 (479)
.... +.+ .+....++.++|.+|..+|++++|+.+|++++++.|+... .+. +|.+|..+|++++|+.
T Consensus 170 ~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 170 YEEN-LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHH-HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 2221 111 3344578889999999999999999999999988665432 455 8999999999999999
Q ss_pred -HHHHHHhcCCC
Q 011721 204 -LLQAVRASSRN 214 (479)
Q Consensus 204 -l~kAL~l~P~n 214 (479)
+.+++.+.+..
T Consensus 249 ~~~~al~~~~~~ 260 (406)
T 3sf4_A 249 YYKKTLLLARQL 260 (406)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 88888776654
No 79
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.65 E-value=1.3e-15 Score=132.48 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
..|.+++..+|+...+++.+|.++...|++++|+..|++++..+|+++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------- 52 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA-------------------------------- 52 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--------------------------------
Confidence 356666777777777777777777777777777777777777777653
Q ss_pred hhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 120 EEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 120 p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
.+++++|.+|..+|+|++|+.+|++|+.++|+++..+. +|.+|..+|++
T Consensus 53 ------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 53 ------------------------------RYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred ------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 26677888888888888888888888888888887766 88888888888
Q ss_pred HHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhh
Q 011721 199 AEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQ 238 (479)
Q Consensus 199 dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a 238 (479)
++|+. +.+++.++|+++.. .....++..++..+.+.
T Consensus 103 ~~A~~~~~~al~~~p~~~~~----~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 103 DGAESGFYSARALAAAQPAH----EALAARAGAMLEAVTAR 139 (142)
T ss_dssp HHHHHHHHHHHHHHHTCGGG----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcch----HHHHHHHHHHHHHHHhc
Confidence 88888 77888888876542 12235566666655543
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.65 E-value=8e-16 Score=149.98 Aligned_cols=175 Identities=13% Similarity=0.038 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHC-CChHHHHHHHHHHHHhcCCChH----H
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQL-DRSEEAIEAIKSFRCLCADDSQ----E 89 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~-GrydEAie~lekal~l~P~da~----~ 89 (479)
.|...+.++...|++++|+.+|.+|+.+.+.. ..++.++|.+|... |++++|+.+|++++.+.|.+.. .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 55677888889999999999999999865432 46789999999996 9999999999999999885421 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
.....+|.+|..+|++++|+.+|++++.+.|..... ......++.++|.+|..+|++++|+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-------------------QWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-------------------GGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc-------------------cHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 234457899999999999999999999987653210 0012247899999999999999999
Q ss_pred HHHHHHHHcCCCCHHH-----HH-HHHHHH--HcCCHHHHHH-HHHHHHhcCCC
Q 011721 170 RYYMKALSLESDKNKQ-----CN-LAICLI--RLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 170 ~~yrKALeLdPdna~a-----~n-LG~~L~--~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.+|+++++++|++... +. |+.++. ..+++++|+. +.+++.++|.+
T Consensus 220 ~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 220 RTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 9999999999997643 23 666664 4578999999 77888887754
No 81
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=1.5e-15 Score=150.95 Aligned_cols=194 Identities=16% Similarity=0.102 Sum_probs=144.7
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhcC---CCh-HHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRCLCA---DDS-QESL 91 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~----~Al~~LA~vL~~~GrydEAie~lekal~l~P---~da-~~~l 91 (479)
..+...+..++..|++++|+.+|.+++...|++. .++..+|.+|...|++++|+..|++++.+.. ++. ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455677888899999999999999999888865 5788999999999999999999999887731 111 2234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchh------HHhcC---------CCc-----------------hHHHHhhchh
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEE------VIACG---------GKS-----------------TKIARSQGRK 139 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~------~la~~---------~k~-----------------~~~A~~~g~k 139 (479)
...++.+|...|++++|+.+|++++.+.+. ..... ... ...|.....+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 455778999999999999999999998432 11000 011 2223222222
Q ss_pred HHHhh------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHH-HHHHHHHcCCHHHHHH-HH
Q 011721 140 TQITL------VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK------QCN-LAICLIRLNRIAEAKS-LL 205 (479)
Q Consensus 140 ~~l~L------~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~------a~n-LG~~L~~lGr~dEAi~-l~ 205 (479)
. +.+ .+....++.++|.+|..+|++++|+.+|++++++.|+... .+. +|.+|..+|++++|+. +.
T Consensus 209 a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 209 N-LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp H-HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred H-HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 1 111 2344578999999999999999999999999999775432 555 9999999999999999 88
Q ss_pred HHHHhcCCC
Q 011721 206 QAVRASSRN 214 (479)
Q Consensus 206 kAL~l~P~n 214 (479)
+++.+.+..
T Consensus 288 ~al~~~~~~ 296 (411)
T 4a1s_A 288 RTLALAVEL 296 (411)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 898887754
No 82
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.65 E-value=1.3e-15 Score=131.66 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=96.2
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH
Q 011721 79 FRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA 158 (479)
Q Consensus 79 al~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a 158 (479)
+..++|+.+..+. .+|..|.+.|+|++|+..|++||+++|. ++.+++++|.+
T Consensus 5 ~a~inP~~a~~~~--~~G~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~~~~~ 56 (126)
T 4gco_A 5 LAYINPELAQEEK--NKGNEYFKKGDYPTAMRHYNEAVKRDPE--------------------------NAILYSNRAAC 56 (126)
T ss_dssp --CCCHHHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHH
T ss_pred HHHHCHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHhhH
Confidence 3446776655443 3678999999999999999999998554 44599999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 159 YLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|..+|++++|+..|++|++++|++..++. +|.+|..+|++++|+. +.+++.++|++..
T Consensus 57 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 57 LTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 99999999999999999999999999887 9999999999999999 9999999999865
No 83
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=2e-16 Score=158.70 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=130.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-------------HHHHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-------------ESLDNVLLEL 98 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-------------~~l~~aLg~l 98 (479)
.+++++|+..|.+++..+|+...++.++|.+|...|++++|+..|++++.++|.+.. ....+.++.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888999999999999999999999999999999999830 1233446789
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
|..+|++++|+.+|+++|+++|. +..+++++|.+|..+|+|++|+.+|++|+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN--------------------------NEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998554 3458999999999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHH--HHHHH
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKS--LLQAV 208 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~--l~kAL 208 (479)
+|++..++. ||.++..+|++++|.. +.+.+
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887 9999999999999965 44444
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.64 E-value=1.3e-14 Score=118.99 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.+++.+|.++...|++++|+..|++++...|.+.... ..++.+|...|++++|+..|++++...|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------ 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW--YNLGNAYYKQGDYDEAIEYYQKALELDPR------------ 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHH--HHHHHHHHHhcCHHHHHHHHHHHHHHCCC------------
Confidence 3567788888888888888888888888888775443 33567788888888888888888876443
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
...+++++|.++...|++++|+.+|++++.+.|++...+. +|.++..+|++++|+. +.+++..+
T Consensus 68 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 68 --------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp --------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred --------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 2347788888888889999999999999888888887776 8888888899999888 77888887
Q ss_pred CC
Q 011721 212 SR 213 (479)
Q Consensus 212 P~ 213 (479)
|+
T Consensus 134 ~~ 135 (136)
T 2fo7_A 134 PR 135 (136)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 85
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=3.1e-15 Score=141.26 Aligned_cols=193 Identities=16% Similarity=0.085 Sum_probs=138.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC---CCh-HHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA---DDS-QESLDN 93 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~----~~Al~~LA~vL~~~GrydEAie~lekal~l~P---~da-~~~l~~ 93 (479)
....+..++..|++++|+.+|.+++...|++ ..++..+|.++...|++++|+..|++++.+.+ +.. ......
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3456677888999999999999999988876 36778899999999999999999998877632 111 233445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHH-------hcC--------CCc--------------------hHHHHhhch
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVI-------ACG--------GKS--------------------TKIARSQGR 138 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~l-------a~~--------~k~--------------------~~~A~~~g~ 138 (479)
.++.+|...|++++|+.+|++++.+.+... ... ... ...|.....
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 577889999999999999999998865421 000 011 222222222
Q ss_pred hHH-----HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHH-HHHHHHHcCCHHHHHH-HH
Q 011721 139 KTQ-----ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN------KQCN-LAICLIRLNRIAEAKS-LL 205 (479)
Q Consensus 139 k~~-----l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna------~a~n-LG~~L~~lGr~dEAi~-l~ 205 (479)
... ..-.+....++.++|.+|..+|++++|+.+|++++++.+... ..+. +|.+|..+|++++|+. +.
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 211 011233456889999999999999999999999998865432 2455 9999999999999999 88
Q ss_pred HHHHhcCCC
Q 011721 206 QAVRASSRN 214 (479)
Q Consensus 206 kAL~l~P~n 214 (479)
+++.+.+..
T Consensus 248 ~al~~~~~~ 256 (338)
T 3ro2_A 248 KTLLLARQL 256 (338)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 888876654
No 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.63 E-value=5e-15 Score=144.68 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=125.1
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
-|....++..+|..+...|++++|+..|++++..+|+++.+.+ .++.+|..+|++++|+..|++++..+|..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~--~la~~~~~~g~~~~A~~~l~~~~~~~p~~------ 184 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGL--LLAETLIALNRSEDAEAVLXTIPLQDQDT------ 184 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHH--HHHHHHHHTTCHHHHHHHHTTSCGGGCSH------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHH--HHHHHHHHCCCHHHHHHHHHhCchhhcch------
Confidence 3788889999999999999999999999999999999987654 46789999999999999999998876532
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQ 206 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~k 206 (479)
...+.+++..+...+++++|+..|+++++++|+++.++. ||.+|..+|++++|+. +.+
T Consensus 185 --------------------~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 185 --------------------RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp --------------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 236677888899999999999999999999999998877 9999999999999999 999
Q ss_pred HHHhcCCCc
Q 011721 207 AVRASSRNE 215 (479)
Q Consensus 207 AL~l~P~n~ 215 (479)
++..+|++.
T Consensus 245 ~l~~~p~~~ 253 (287)
T 3qou_A 245 HLRXDLTAA 253 (287)
T ss_dssp HHHHCTTGG
T ss_pred HHhcccccc
Confidence 999999873
No 87
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.4e-14 Score=142.21 Aligned_cols=163 Identities=13% Similarity=0.068 Sum_probs=124.3
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH------H
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV------I 123 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~------l 123 (479)
...++..+|.++...|++++|+..|++++.+.|.+.. ......++.+|...|++++|+.+|++++.+.+.. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4557889999999999999999999999999999864 2345567899999999999999999999885321 1
Q ss_pred h---------cCCCchHHHHhhchhHHHhhhhh------HHHHHHHHHHHHHHcCC--------------------HHHH
Q 011721 124 A---------CGGKSTKIARSQGRKTQITLVQE------LSRISGNLAWAYLQQND--------------------YESA 168 (479)
Q Consensus 124 a---------~~~k~~~~A~~~g~k~~l~L~pe------~~~al~nLG~ay~~lGd--------------------ydeA 168 (479)
. ........|.....+. +.+.+. ...++.++|.+|..+|+ +++|
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 0 0112333444333322 222222 34689999999999999 9999
Q ss_pred HHHHHHHHHcC------CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 169 ERYYMKALSLE------SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 169 ~~~yrKALeLd------Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
+.+|++++.+. |.....+. +|.+|..+|++++|+. +.+++.+.+...
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 99999999983 22234566 9999999999999999 889998876543
No 88
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=6.9e-15 Score=133.62 Aligned_cols=131 Identities=16% Similarity=0.155 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
.++++|.++...|++++|+..|++++ +| ++. ....+|.+|...|++++|+..|++++.++|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------- 69 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSR--ICFNIGCMYTILKNMTEAEKAFTRSINRDKH------------- 69 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------------
Confidence 46778888888888888888888874 33 333 3345678888888888888888888887543
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------------HHHH-HHHHHHHcCC
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN----------------KQCN-LAICLIRLNR 197 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna----------------~a~n-LG~~L~~lGr 197 (479)
+..+++++|.+|..+|++++|+.+|++++++.|++. .++. +|.+|..+|+
T Consensus 70 -------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (213)
T 1hh8_A 70 -------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136 (213)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred -------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence 334888999999999999999999999999888765 6666 9999999999
Q ss_pred HHHHHH-HHHHHHhcCCCcc
Q 011721 198 IAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 198 ~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++|+. +.+++.++|++..
T Consensus 137 ~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 137 WKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHHHcCccccc
Confidence 999999 8888999887643
No 89
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.63 E-value=1.6e-14 Score=140.02 Aligned_cols=168 Identities=15% Similarity=0.107 Sum_probs=134.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHH
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDRVDS------ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVL 95 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~~~~------Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aL 95 (479)
...++..+++++|+.+|.+++...+.... .+..+|.++...|++++|+..|++++.+.+.... ....+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34567889999999999999987665443 3446899999999999999999999997654322 2334567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|.+|..+|++++|+.+|++|+++...... ..+....+++++|.+|..+|+|++|+.+|++|
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHD-------------------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSC-------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhccc-------------------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999999999987433100 01233468999999999999999999999999
Q ss_pred HHcCCCC------HHHHH-HHHHHHHcC-CHHHHHH-HHHHHHhcC
Q 011721 176 LSLESDK------NKQCN-LAICLIRLN-RIAEAKS-LLQAVRASS 212 (479)
Q Consensus 176 LeLdPdn------a~a~n-LG~~L~~lG-r~dEAi~-l~kAL~l~P 212 (479)
+++.+.. +.++. +|.+|..+| .+++|+. +.+|+.+..
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9987654 45666 999999999 5799999 888887653
No 90
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=8.8e-15 Score=145.48 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=125.2
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------hhHH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE--SLDNVLLELYKRSKRIEEEIELLKRKLKKT------EEVI 123 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~--~l~~aLg~lY~klGr~deAie~lekALkl~------p~~l 123 (479)
....+..+|.++...|++++|+..|++++.+.|++... .....++.+|...|++++|+.+|++++.+. +...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 34567789999999999999999999999999998642 344567899999999999999999999984 3211
Q ss_pred h---------cCCCchHHHHhhchhHHHhh------hhhHHHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 011721 124 A---------CGGKSTKIARSQGRKTQITL------VQELSRISGNLAWAYLQQND-----------------YESAERY 171 (479)
Q Consensus 124 a---------~~~k~~~~A~~~g~k~~l~L------~pe~~~al~nLG~ay~~lGd-----------------ydeA~~~ 171 (479)
. ........|.....+. +.+ .+....++.++|.+|..+|+ +++|+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERH-LTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 1 0112333444433332 222 45566899999999999999 9999999
Q ss_pred HHHHHHcCCC------CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 172 YMKALSLESD------KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 172 yrKALeLdPd------na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
|++++++.+. ....+. +|.+|..+|++++|+. +.+++.+.+..
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 9999997532 224555 9999999999999999 88999887753
No 91
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=1.6e-14 Score=136.36 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH------Hh-
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV------IA- 124 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~------la- 124 (479)
..+...|.++...|++++|+..|++++...|++.. ......++.+|...|++++|+.+|++++.+.+.. ..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 45778899999999999999999999999999864 2344567899999999999999999999884321 10
Q ss_pred --------cCCCchHHHHhhchhHHHhhhh------hHHHHHHHHHHHHHHcCC--------------------HHHHHH
Q 011721 125 --------CGGKSTKIARSQGRKTQITLVQ------ELSRISGNLAWAYLQQND--------------------YESAER 170 (479)
Q Consensus 125 --------~~~k~~~~A~~~g~k~~l~L~p------e~~~al~nLG~ay~~lGd--------------------ydeA~~ 170 (479)
........|.....+. +.+.+ ....++.++|.+|..+|+ +++|+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 0112233443333322 12222 224689999999999999 999999
Q ss_pred HHHHHHHcC------CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 171 YYMKALSLE------SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 171 ~yrKALeLd------Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+|++++.+. +.....+. +|.++..+|++++|+. +.+++.+.+..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 999999873 22234555 9999999999999999 88898876643
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.62 E-value=1.5e-14 Score=135.19 Aligned_cols=142 Identities=8% Similarity=-0.000 Sum_probs=118.4
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
.+.+++.+|..+...|++++|+..|++++...|.++. ....+.+|.+|..+|++++|+..|+++++++|....
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------ 76 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------ 76 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------
Confidence 3567899999999999999999999999999998753 223345789999999999999999999999886421
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCHHH-------
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQ------------------QNDYESAERYYMKALSLESDKNKQ------- 185 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~------------------lGdydeA~~~yrKALeLdPdna~a------- 185 (479)
...+++.+|.+|.. +|++++|+..|+++++..|++..+
T Consensus 77 -----------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 77 -----------------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL 139 (225)
T ss_dssp -----------------HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 12356666666654 789999999999999999998633
Q ss_pred -----------HHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 186 -----------CNLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 186 -----------~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.+|.+|..+|++++|+. +.+++...|++..
T Consensus 140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 182 (225)
T 2yhc_A 140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA 182 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc
Confidence 238999999999999999 9999999999864
No 93
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.60 E-value=5.5e-14 Score=136.30 Aligned_cols=170 Identities=14% Similarity=0.101 Sum_probs=133.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh----HHHHHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS----QESLDN 93 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~------~Al~~LA~vL~~~GrydEAie~lekal~l~P~da----~~~l~~ 93 (479)
.....++..+++++|+.+|.+++...+... ..++.+|.++...|++++|+..|++++...+... .....+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344567788999999999999999766543 3466799999999999999999999998765431 233445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|.+|..+|++++|+.+|++|+.+...... .. .....+++++|.+|..+|+|++|+.+|+
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~----~~---------------~~~~~~~~nlg~~y~~~~~y~~Al~~~~ 220 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHD----NE---------------EFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc----cc---------------cchHHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 6789999999999999999999977432110 00 0012589999999999999999999999
Q ss_pred HHHHcCCCC------HHHHH-HHHHHHHcCCHHHH-HH-HHHHHHhcC
Q 011721 174 KALSLESDK------NKQCN-LAICLIRLNRIAEA-KS-LLQAVRASS 212 (479)
Q Consensus 174 KALeLdPdn------a~a~n-LG~~L~~lGr~dEA-i~-l~kAL~l~P 212 (479)
+|+++.++. +.++. +|.+|..+|++++| .. +.+|+.+..
T Consensus 221 kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999986542 45555 99999999999999 66 788887653
No 94
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.60 E-value=2.5e-14 Score=127.34 Aligned_cols=66 Identities=21% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHHHHHH-HHHcCCH--HHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 151 ISGNLAWA-YLQQNDY--ESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 151 al~nLG~a-y~~lGdy--deA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++.++|.+ |...|++ ++|+.+|+++++++|++..++. ||.+|..+|++++|+. +.+++.++|++..
T Consensus 80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 66777777 6677887 8888888888888888777665 8888888888888888 7777888777644
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.60 E-value=6.9e-14 Score=114.65 Aligned_cols=133 Identities=24% Similarity=0.270 Sum_probs=118.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
+...+.++...|++++|+.+|.+++..+|....++..+|.++...|++++|+..|++++...|.+.... ..++.+|..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW--YNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHH--HHHHHHHHH
Confidence 455667788899999999999999999999999999999999999999999999999999999886544 346789999
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
.|++++|+..|++++.+.|. +..++..+|.+|...|++++|+.+|++++.++|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR--------------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999987543 2347899999999999999999999999999997
Q ss_pred C
Q 011721 182 K 182 (479)
Q Consensus 182 n 182 (479)
+
T Consensus 136 ~ 136 (136)
T 2fo7_A 136 S 136 (136)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=4.5e-15 Score=144.81 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..+...+.+++..|++++|+.+|.+++..+|++..++.++|.+|...|++++|+..|++++.++|++....+ .+|.+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF--FLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHH
Confidence 455667788899999999999999999999999999999999999999999999999999999999876544 467899
Q ss_pred HHcCCHHHHHHHHHHHHHhchhH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEV 122 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~ 122 (479)
..+|++++|+..|+++++++|..
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999998864
No 97
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=4.1e-14 Score=128.45 Aligned_cols=147 Identities=16% Similarity=0.080 Sum_probs=122.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
+...+.+++..|++++|+.+|.+++ ++ ...++.++|.+|...|++++|+..|++++.++|+++...+ .+|.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF--QRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH--HHHHHHHH
Confidence 4556778889999999999999986 33 5779999999999999999999999999999999876544 46789999
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
+|++++|+..|++++++.|....... ....+...|....+++++|.+|..+|++++|+.+|+++++++|+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDY----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEEC----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHH----------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999999998775431100 00001235666789999999999999999999999999999998
Q ss_pred CH
Q 011721 182 KN 183 (479)
Q Consensus 182 na 183 (479)
+.
T Consensus 154 ~~ 155 (213)
T 1hh8_A 154 PR 155 (213)
T ss_dssp GG
T ss_pred cc
Confidence 74
No 98
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=8.4e-14 Score=120.29 Aligned_cols=130 Identities=12% Similarity=-0.006 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..++..+|.++...|++++|+..|++++..+|.++.... .++.+|...|++++|+..|++++.++|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~a~~~~~~~~~~~A~~~~~~a~~~~~~----------- 79 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG--NRSLAYLRTECYGYALGDATRAIELDKK----------- 79 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------
Confidence 356788999999999999999999999999998865543 4668899999999999999999988554
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHcCCHHHHHH-HHHHH
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN---LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n---LG~~L~~lGr~dEAi~-l~kAL 208 (479)
+..+++++|.+|..+|++++|+.+|+++++++|++...+. ++..+..+|++++|+. +.+..
T Consensus 80 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 80 ---------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 3348899999999999999999999999999999987653 5555888999999999 66554
Q ss_pred Hh
Q 011721 209 RA 210 (479)
Q Consensus 209 ~l 210 (479)
.+
T Consensus 145 ~~ 146 (166)
T 1a17_A 145 SV 146 (166)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.58 E-value=2.3e-13 Score=126.94 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=134.4
Q ss_pred CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC----ChHHHHHHHHHHHHhcCCChHHHHH
Q 011721 17 AGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD----RSEEAIEAIKSFRCLCADDSQESLD 92 (479)
Q Consensus 17 ~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G----rydEAie~lekal~l~P~da~~~l~ 92 (479)
.....+...+.++...+++++|+.+|++|+..+ ++.++++||.+|.. + ++++|+..|+++.. +.++.+.+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~- 89 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEI- 89 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHH-
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHH-
Confidence 334566678888888999999999999999864 57899999999998 7 99999999999854 45555443
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH----cCC
Q 011721 93 NVLLELYKR----SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ----QND 164 (479)
Q Consensus 93 ~aLg~lY~k----lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~----lGd 164 (479)
.|+.+|.. .+++++|+.+|++|++..+.. ..+.++++||.+|.. .++
T Consensus 90 -~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~------------------------~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 90 -VLARVLVNRQAGATDVAHAITLLQDAARDSESD------------------------AAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp -HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH------------------------HHHHHHHHHHHHHHHTSSSSCC
T ss_pred -HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc------------------------chHHHHHHHHHHHHcCCCCCCC
Confidence 45678887 889999999999999874310 234589999999999 999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc-C-----CHHHHHH-HHHHHHhcC
Q 011721 165 YESAERYYMKALSLESDKNKQCN-LAICLIRL-N-----RIAEAKS-LLQAVRASS 212 (479)
Q Consensus 165 ydeA~~~yrKALeLdPdna~a~n-LG~~L~~l-G-----r~dEAi~-l~kAL~l~P 212 (479)
+++|+.+|++|+++ |+++.++. ||.+|... | ++++|+. +.+++....
T Consensus 145 ~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 145 DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999 66666665 99999875 3 8999999 888888754
No 100
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.5e-14 Score=119.01 Aligned_cols=115 Identities=12% Similarity=-0.005 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
...++..+|..+...|++++|+..|++++.++|+++.... .+|.+|..+|++++|+..|+++++++|.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~~a~~~~~~~~~~~A~~~~~~al~~~p~---------- 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS--NRAAALAKLMSFPEAIADCNKAIEKDPN---------- 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCC----------
Confidence 3456777888888888888888888888888887764433 3456677777777777777777766443
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHH-HHHHHHH
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE------SDKNKQCN-LAICLIR 194 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd------Pdna~a~n-LG~~L~~ 194 (479)
+..+++++|.+|..+|++++|+.+|+++++++ |++..... |+.+...
T Consensus 71 ----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 71 ----------------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 23466777777777777777777777777777 66665555 6655543
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.58 E-value=3.3e-14 Score=150.66 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=132.1
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+.+++...|.....+...+.+++..|++++|+.+|+++++.+|++..++.++|.+|..+|++++|++.|++++.++|+++
T Consensus 12 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 91 (568)
T 2vsy_A 12 LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP 91 (568)
T ss_dssp ---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 45567777877778888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc---CC
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ---ND 164 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l---Gd 164 (479)
.... .++.+|..+|++++|+..|+++++++|. +..++.++|.+|..+ |+
T Consensus 92 ~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 92 GIAL--WLGHALEDAGQAEAAAAAYTRAHQLLPE--------------------------EPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhhcccc
Confidence 6544 4678999999999999999999998554 345899999999999 99
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHH-HH
Q 011721 165 YESAERYYMKALSLESDKNKQCN-LA 189 (479)
Q Consensus 165 ydeA~~~yrKALeLdPdna~a~n-LG 189 (479)
+++|+.+|+++++++|++...+. |+
T Consensus 144 ~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999999999999876665 66
No 102
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.57 E-value=4.4e-15 Score=135.38 Aligned_cols=147 Identities=16% Similarity=0.092 Sum_probs=110.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH--------------HHHHHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ--------------ESLDNVLL 96 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~--------------~~l~~aLg 96 (479)
..+++++|...+.......+.....+..+|.++...|+|++|+..|++++.+.|.++. ......++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3466777777666555555556678899999999999999999999999999998761 12334466
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.+|..+|++++|+.+|++++.+.|. +..+++++|.+|..+|+|++|+.+|++++
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKN--------------------------NVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7888888888888888888887543 33478888888888888888888888888
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
+++|++..++. |+.++..+++..++..
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887776 8888888888877774
No 103
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.56 E-value=1.8e-15 Score=158.29 Aligned_cols=145 Identities=13% Similarity=0.066 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-------------HHHHHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-------------ESLDNVLLELY 99 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-------------~~l~~aLg~lY 99 (479)
+++++|+..|.+++...|+...++.++|.+|..+|+|++|+..|++++.++|.+.. ....+.++.+|
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888899999999999999999999999999999998731 22334467889
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
.++|++++|+.+|++||.++|. +..+|+++|.+|..+|+|++|+.+|++|++++
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSA--------------------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhcCCc--------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999988554 33588999999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 180 SDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
|++..++. |+.++..+|++++|..
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988777 9999999998888887
No 104
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=7.8e-14 Score=146.30 Aligned_cols=183 Identities=11% Similarity=0.034 Sum_probs=150.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCChHH
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLV-------EKDPS-------RAISLFWAAIN-AGDRVDSALKDMAVVMKQLDRSEE 71 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~-------~gd~e-------eAi~~y~kAL~-l~p~~~~Al~~LA~vL~~~GrydE 71 (479)
.+..++...|.....+...+.++.. .|+++ +|+..|.+|+. ..|+....+..+|.++...|++++
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 4566777788777777766666554 68876 99999999997 799999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHH
Q 011721 72 AIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRI 151 (479)
Q Consensus 72 Aie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~a 151 (479)
|+.+|++++.+.|.++.. ....++.++.+.|++++|+..|++|++..|.. ..+
T Consensus 340 A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~--------------------------~~~ 392 (530)
T 2ooe_A 340 VHSIYNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMIFKKAREDARTR--------------------------HHV 392 (530)
T ss_dssp HHHHHHHHHHSSSSCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC--------------------------THH
T ss_pred HHHHHHHHhCccccCchH-HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc--------------------------hHH
Confidence 999999999999987531 23345677889999999999999999874431 123
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 152 SGNLAWA-YLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 152 l~nLG~a-y~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+...|.+ +..+|++++|..+|++++++.|+++..+. ++.++..+|++++|.. +.+++...|.++.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 4444444 45799999999999999999999998887 9999999999999999 8999998776643
No 105
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=3.6e-14 Score=141.75 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh----HH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGD-------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS----QE 89 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p-------~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da----~~ 89 (479)
.+...+.++...|++++|+.+|.+|+...+ ....++.++|.+|...|++++|++.|++++.+.+... ..
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 455677888999999999999999998522 2346889999999999999999999999998866432 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
.....+|.+|..+|++++|+.+|++|+.+.+.... .|....++++||.+|..+|++++|+
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~ 284 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI--------------------LPSLPQAYFLITQIHYKLGKIDKAH 284 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------GGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--------------------chhHHHHHHHHHHHHHHCCCHHHHH
Confidence 23445789999999999999999999998443210 1445579999999999999999999
Q ss_pred HHHHHHHHcCC-----CCHHHHH-HHHHHHHcCC---HHHHHHH
Q 011721 170 RYYMKALSLES-----DKNKQCN-LAICLIRLNR---IAEAKSL 204 (479)
Q Consensus 170 ~~yrKALeLdP-----dna~a~n-LG~~L~~lGr---~dEAi~l 204 (479)
.+|++|+++.+ .....+. ||.+|...|+ +++|+.+
T Consensus 285 ~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 285 EYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999943 3333445 9999999999 7777773
No 106
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.56 E-value=5.6e-14 Score=115.43 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=106.0
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+|....++..+|.++...|++++|+..|++++..+|+++... ..++.+|...|++++|+..|++++.+.|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------- 78 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYF--CNRAAAYSKLGNYAGAVQDCERAICIDPA------- 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHhhchHHHHHHHHHHHhcCcc-------
Confidence 344567788999999999999999999999999999886544 34678899999999999999999987544
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
+..+++.+|.+|..+|++++|+.+|+++++++|++..++. +|.++..+|++
T Consensus 79 -------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 -------------------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 3358899999999999999999999999999999998877 99999999875
No 107
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.56 E-value=6.1e-14 Score=116.48 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=103.5
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
.|....++..+|.++...|++++|+..|++++..+|++.... ..++.+|...|++++|+.+|++++++.|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~a~~~~~~------- 82 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY--SNRAACYTKLLEFQLALKDCEECIQLEPT------- 82 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHH--HHHHHHHTTTTCHHHHHHHHHHHHHHCTT-------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHHhccHHHHHHHHHHHHHhCCC-------
Confidence 455678899999999999999999999999999999886544 34567889999999999999999987544
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCC
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNR 197 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr 197 (479)
+..+++++|.+|..+|++++|+.+|+++++++|++..++. ++.++..+|+
T Consensus 83 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 -------------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred -------------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 3348899999999999999999999999999999988777 9999988774
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.56 E-value=3.7e-14 Score=139.14 Aligned_cols=193 Identities=14% Similarity=0.017 Sum_probs=139.8
Q ss_pred cCCHHHHHHHHHHHHHc--------CCCcHH---HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh----HHHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINA--------GDRVDS---ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS----QESLDNVLL 96 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l--------~p~~~~---Al~~LA~vL~~~GrydEAie~lekal~l~P~da----~~~l~~aLg 96 (479)
.|++++|..++++|.+. .++... .+...|.+|..+|++++|+.+|.+++.+.+... .......++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777766652 223222 344568899999999999999999998876421 123334467
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.+|..+|++++|+.+|++|+.+++.... ......++.++|.+|.. |++++|+.+|++|+
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~--------------------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGT--------------------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTC--------------------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 8999999999999999999998654210 01123588999999999 99999999999999
Q ss_pred HcCCCC------HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc---h---HHH-H--HHHHHHHHHHHHHHhhh
Q 011721 177 SLESDK------NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM---D---ESY-A--KSFEHASLMLTELESQS 239 (479)
Q Consensus 177 eLdPdn------a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a---~---~~~-~--k~~~rA~eaL~el~~a~ 239 (479)
++.|.. ..+++ ||.+|..+|++++|+. +.+++.+.|++... . ... . ...++..+++..+++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 998754 34566 9999999999999999 99999988765421 0 000 1 11245666777777777
Q ss_pred hcCCCCh
Q 011721 240 MLQPTDY 246 (479)
Q Consensus 240 ~~~P~~~ 246 (479)
+.|...
T Consensus 223 -~~p~~~ 228 (307)
T 2ifu_A 223 -SIPGFS 228 (307)
T ss_dssp -TSTTST
T ss_pred -CCCCCC
Confidence 788644
No 109
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.55 E-value=4.5e-16 Score=156.11 Aligned_cols=170 Identities=15% Similarity=0.064 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHH----HHHcCCCcHHHHHHHHHHHH------------HCCChHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011721 33 KDPSRAISLFWA----AINAGDRVDSALKDMAVVMK------------QLDRSEEAIEAIKSFRCLCADDSQESLDNVLL 96 (479)
Q Consensus 33 gd~eeAi~~y~k----AL~l~p~~~~Al~~LA~vL~------------~~GrydEAie~lekal~l~P~da~~~l~~aLg 96 (479)
+.+++|+..+.. ++.+.|.+ +|..+|..+. .++++++|++.|+.++...|+++... ..+|
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~--~~~g 154 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV--KERG 154 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH--HHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH--HHHH
Confidence 467888888888 78888876 5666665543 56788899999998888888765543 4467
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.+|..+|++++|+..|++|+.+.|....+.. . ....+.+....++++||.+|..+|+|++|+.+|++|+
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---~--------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSN---E--------EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---H--------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCCh---H--------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8999999999999999999999876422110 0 0123345556799999999999999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+++|+++.++. +|.+|..+|++++|+. +.+++.++|++..+
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 266 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999998887 9999999999999999 99999999998664
No 110
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.54 E-value=1.7e-13 Score=118.04 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..++.+||.++..+|+|++|++.|++++.++|+++..+. .+|.+|..+|++++|+..|+++|++.|.....
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~--nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~------- 78 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYN--NKAAVYFEEKKFAECVQFCEKAVEVGRETRAD------- 78 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--hHHHHHHHhhhHHHHHHHHHHHHHhCcccchh-------
Confidence 457889999999999999999999999999999876544 36789999999999999999999998764310
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
.+....++.++|.+|..+|+|++|+.+|+++|++.|+.
T Consensus 79 ------------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 79 ------------YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred ------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 01123589999999999999999999999999999863
No 111
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.54 E-value=7.8e-14 Score=123.34 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++++|.+|..+|+|++|+.+|+++++++|++..++. ||.+|..+|++++|+. +.+++.++|++..
T Consensus 47 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 47 YLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 6677888888888888888888888888888877766 8888888888888888 7778888887755
No 112
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.54 E-value=2.9e-13 Score=121.04 Aligned_cols=166 Identities=13% Similarity=0.045 Sum_probs=125.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHHcCC
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD----SQESLDNVLLELYKRSKR 104 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d----a~~~l~~aLg~lY~klGr 104 (479)
.+..|++++|+..+.......+....++..+|.++...|++++|+..|++++.+.... ........++.+|..+|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567999999996555444334677889999999999999999999999998854321 123344557899999999
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD--K 182 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd--n 182 (479)
+++|+.+|++++.+...... . ......++.++|.+|..+|++++|+.+|++++++.+. +
T Consensus 82 ~~~A~~~~~~al~~~~~~~~----~---------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 142 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPE----D---------------PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCC----C---------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCc----c---------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 99999999999998432110 0 0012358899999999999999999999999987432 2
Q ss_pred H----HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 183 N----KQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 183 a----~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
. ..+. ||.++..+|++++|+. +.+++.+...
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 2 2244 9999999999999999 8888877543
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.54 E-value=1.7e-14 Score=129.56 Aligned_cols=134 Identities=16% Similarity=0.106 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
...+..+|.++...|++++|+..|++++..+|+++...+ .++.+|...|++++|+..|++++.+.| ..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~--~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--------- 73 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKL--AKADCLLETKQFELAQELLATIPLEYQ-DN--------- 73 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHH--HHHHHHHHTTCHHHHHHHHTTCCGGGC-CH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHCCCHHHHHHHHHHhhhccC-Ch---------
Confidence 345788999999999999999999999999999986654 467899999999999999999988765 21
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWA-YLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~a-y~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
.++..++.+ +...+...+|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++.
T Consensus 74 -----------------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 74 -----------------SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp -----------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----------------HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 233334433 23334556789999999999999998877 9999999999999999 899999
Q ss_pred hcCCCc
Q 011721 210 ASSRNE 215 (479)
Q Consensus 210 l~P~n~ 215 (479)
.+|+..
T Consensus 137 ~~p~~~ 142 (176)
T 2r5s_A 137 VNLGAQ 142 (176)
T ss_dssp TCTTTT
T ss_pred hCcccC
Confidence 999753
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.53 E-value=3.7e-14 Score=127.75 Aligned_cols=111 Identities=8% Similarity=-0.081 Sum_probs=91.9
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
++...|.....+...+.+++..|++++|+.+|++++.++|++..++.++|.+|..+|+|++|+.+|++++.++|+++.
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~-- 105 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT-- 105 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH--
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH--
Confidence 333444444566677888999999999999999999999999999999999999999999999999999999998753
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
+++++|.+|..+|++++|+.
T Consensus 106 ------------------------------------------------------------~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 106 ------------------------------------------------------------PVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHcCCHHHHHH
Confidence 55677777777777777777
Q ss_pred HHHHHHHcCCCCH
Q 011721 171 YYMKALSLESDKN 183 (479)
Q Consensus 171 ~yrKALeLdPdna 183 (479)
+|++|+++.|+.+
T Consensus 126 ~~~~al~l~~~~~ 138 (151)
T 3gyz_A 126 CFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCHH
Confidence 7777777777654
No 115
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=4.7e-13 Score=133.88 Aligned_cols=164 Identities=14% Similarity=0.111 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC--Ch--HH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGD-------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD--DS--QE 89 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p-------~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~--da--~~ 89 (479)
.+...+.++...|+++.|+.+|.+|+...+ ....++.++|.+|...|++++|++.|++++.+.+. +. ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 455667788999999999999999998432 23567889999999999999999999999987542 21 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
.....+|.+|..+|++++|+.+|++++.+.... ..|....++++||.+|..+|++++|+
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~ 281 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---------------------VPDLLPKVLFGLSWTLCKAGQTQKAF 281 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------------CGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---------------------CChhHHHHHHHHHHHHHHCCCHHHHH
Confidence 334457899999999999999999999974432 12344569999999999999999999
Q ss_pred HHHHHHHHcCCC-----CHHHHH-HHHHHHHcCC---HHHHHHHH
Q 011721 170 RYYMKALSLESD-----KNKQCN-LAICLIRLNR---IAEAKSLL 205 (479)
Q Consensus 170 ~~yrKALeLdPd-----na~a~n-LG~~L~~lGr---~dEAi~l~ 205 (479)
.+|++|+++.+. ....+. |+.++...|+ +.+|+.+.
T Consensus 282 ~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 282 QFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999544 334455 8989988898 77777733
No 116
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=1.1e-12 Score=129.83 Aligned_cols=171 Identities=11% Similarity=-0.015 Sum_probs=137.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHH
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVD-----SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVL 95 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~-----~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aL 95 (479)
.+.+++..|++++|+.++.+++...|... .++..+|.++...|++++|+..+++++.+.|.... ......+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45567789999999999999999765432 36788999999999999999999999988765322 2223457
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+.+|..+|++++|+.+|++++.+.+..... -.|....++.++|.+|..+|++++|+.+|+++
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLE------------------QLPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCT------------------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccc------------------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 789999999999999999999986542110 00223457899999999999999999999999
Q ss_pred HHcCCCC-----HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 176 LSLESDK-----NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 176 LeLdPdn-----a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+++.+.. ...+. +|.++...|++++|+. +.+++.+.+.
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 9998863 24455 9999999999999999 8888877543
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.50 E-value=5.6e-14 Score=136.99 Aligned_cols=106 Identities=14% Similarity=0.035 Sum_probs=94.6
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCc
Q 011721 50 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKS 129 (479)
Q Consensus 50 p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~ 129 (479)
|....++..+|.++...|++++|+..|++++..+|+++.... .+|.+|..+|++++|+..|+++++++|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~~~~~~A~~~~~~al~~~p~-------- 70 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT--NRALCYLKMQQPEQALADCRRALELDGQ-------- 70 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH--HHHHHHHHTTCHHHHHHHHHHHTTSCTT--------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCC--------
Confidence 456778999999999999999999999999999999876544 4678999999999999999999988554
Q ss_pred hHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 130 TKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 130 ~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
+..+++++|.+|..+|++++|+.+|+++++++|+++
T Consensus 71 ------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 71 ------------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 345899999999999999999999999999999874
No 118
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.50 E-value=3.5e-13 Score=123.99 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=82.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
+|..+...|+|++|+..|++||+++|...... .+...|.+..+|.|+|.++..+|+|++|+.+|++
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~--------------a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--------------AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--------------CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh--------------hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455555555555555555555554411000 0112344556999999999999999999999999
Q ss_pred HHHc-------CCCCHHHH----H-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 175 ALSL-------ESDKNKQC----N-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 175 ALeL-------dPdna~a~----n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
||++ +|++..++ + +|.+|..+|++++|+. |.+++.++|++..+
T Consensus 83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 9999 99999887 7 9999999999999999 99999999988653
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.50 E-value=1.4e-12 Score=106.21 Aligned_cols=116 Identities=23% Similarity=0.267 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..++..+|.++...|++++|++.|++++..+|.+.... ..++.+|...|++++|+..|++++.+.|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------- 75 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW--YNLGNAYYKQGDYDEAIEYYQKALELDPN----------- 75 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----------
Confidence 56788999999999999999999999999999876543 34678899999999999999999887543
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN 196 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG 196 (479)
+..++.++|.+|...|++++|+.+|++++.++|+++.++. ||.++..+|
T Consensus 76 ---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 ---------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 3347899999999999999999999999999999998877 999987765
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.49 E-value=1.2e-13 Score=122.38 Aligned_cols=115 Identities=11% Similarity=0.001 Sum_probs=96.0
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+.+++...|.....+...+.+++..|++++|+..|.+++..+|++..+++++|.+|...|++++|+..|++++.++|+++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44555556665566777788899999999999999999999999999999999999999999999999999999999865
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
. +++++|.+|..+|++++
T Consensus 90 ~--------------------------------------------------------------~~~~lg~~~~~~g~~~~ 107 (148)
T 2vgx_A 90 R--------------------------------------------------------------FPFHAAECLLQXGELAE 107 (148)
T ss_dssp H--------------------------------------------------------------HHHHHHHHHHHTTCHHH
T ss_pred h--------------------------------------------------------------HHHHHHHHHHHcCCHHH
Confidence 3 55677777777778888
Q ss_pred HHHHHHHHHHcCCCCHH
Q 011721 168 AERYYMKALSLESDKNK 184 (479)
Q Consensus 168 A~~~yrKALeLdPdna~ 184 (479)
|+.+|+++++++|+++.
T Consensus 108 A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 108 AESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHCcCCCc
Confidence 88888888777777654
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.49 E-value=1e-12 Score=113.42 Aligned_cols=130 Identities=10% Similarity=-0.051 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+.+++..|++++|+.+|.+++..+|.+..++..+|.++...|++++|+..|++++.++|.++...+ .+|.+|.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY--RRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH--HHHHHHH
Confidence 34556677888999999999999999999999999999999999999999999999999999999876544 4678999
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRIS--GNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al--~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.+|++++|+.+|++++.+.|... .++ ..++..+..+|++++|+.+|+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~--------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDK--------------------------DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCH--------------------------HHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999866532 244 45566688999999999999998765
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.49 E-value=9.4e-14 Score=120.65 Aligned_cols=78 Identities=9% Similarity=-0.052 Sum_probs=67.2
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ 88 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~ 88 (479)
++...|.....+...+..++..|++++|+.+|.+++..+|++..++..+|.+|...|++++|+..|++++.++|+++.
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 344444444456667788899999999999999999999999999999999999999999999999999999998753
No 123
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.49 E-value=1.6e-12 Score=114.82 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=100.6
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
++....+++.+|.++...|+|++|+..|++++.++|+++..++ .++.+|..+|++++|+..|++++.++|.
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~al~~~p~------- 77 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLS--NRAAAYSASGQHEKAAEDAELATVVDPK------- 77 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHH--HHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Confidence 3446778999999999999999999999999999999876544 4678999999999999999999998654
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAIC 191 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~ 191 (479)
+..+++++|.+|..+|++++|+.+|+++++++|++...+. ++.+
T Consensus 78 -------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 78 -------------------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred -------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3458999999999999999999999999999999987554 5543
No 124
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.49 E-value=3.4e-13 Score=113.92 Aligned_cols=103 Identities=19% Similarity=0.115 Sum_probs=61.1
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
++....++..+|.++...|++++|+..|++++.++|+++.
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------------------------------------- 44 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------------------------------------- 44 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------------------------------------
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH----------------------------------------
Confidence 4455666677777777777777777777777777666543
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQ 206 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~k 206 (479)
+++++|.+|..+|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+
T Consensus 45 ----------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 45 ----------------------YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp ----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455555555555555555555555555555555444 5555555555555555 555
Q ss_pred HHHhcCC
Q 011721 207 AVRASSR 213 (479)
Q Consensus 207 AL~l~P~ 213 (479)
++.++|+
T Consensus 103 a~~~~p~ 109 (137)
T 3q49_B 103 AYSLAKE 109 (137)
T ss_dssp HHHHHHH
T ss_pred HHHHChh
Confidence 5555554
No 125
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.48 E-value=5e-13 Score=115.13 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
-||.+|.+.|+|++|+.+|++||+++|. ++.+++++|.+|..+|+|++|+.+|+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~--------------------------~~~~~~nlg~~~~~~~~~~~A~~~~~ 66 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS--------------------------NITFYNNKAAVYFEEKKFAECVQFCE 66 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 3688999999999999999999998654 34589999999999999999999999
Q ss_pred HHHHcCCCCH-------HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 174 KALSLESDKN-------KQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 174 KALeLdPdna-------~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+|++++|++. .++. ||.++..+|++++|+. +.++|...|+
T Consensus 67 ~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 67 KAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 9999998763 3555 9999999999999999 9999998885
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.1e-12 Score=110.45 Aligned_cols=92 Identities=17% Similarity=0.065 Sum_probs=85.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|..|...|++++|+..|++++.++|. ++.+++++|.+|..+|+|++|+.+|+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 62 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPE--------------------------DARGYSNRAAALAKLMSFPEAIADCN 62 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4678899999999999999999998554 34599999999999999999999999
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
++++++|+++.++. +|.+|..+|++++|+. +.+++.++
T Consensus 63 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 63 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999998887 9999999999999999 99999999
No 127
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.48 E-value=2.5e-13 Score=119.81 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCL--------CADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA 124 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l--------~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la 124 (479)
..++..+|..+...|+|++|+..|.+++.+ +|.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~----------------------------------- 55 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW----------------------------------- 55 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------------------------
Confidence 356778888888888888888888888877 3332210
Q ss_pred cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 125 CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 125 ~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
..+.|....+++++|.+|..+|+|++|+.+|++||+++|+++.++. +|.+|..+|++++|+.
T Consensus 56 -----------------~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 56 -----------------VELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp -----------------HHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence 0123445568899999999999999999999999999999998877 9999999999999999
Q ss_pred -HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHh
Q 011721 204 -LLQAVRASSRNEKMDESYAKSFEHASLMLTELES 237 (479)
Q Consensus 204 -l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~ 237 (479)
+.+++.++|++... ....+.++...+.....
T Consensus 119 ~~~~al~l~p~~~~~---~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 119 DLKLLLRNHPAAASV---VAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHHHCGGGHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHH---HHHHHHHHHHHHHHHHH
Confidence 88899999987521 12334445555544443
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.46 E-value=1.3e-12 Score=116.78 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=123.6
Q ss_pred HHhhCCCC-CcHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-
Q 011721 11 VIHKVPAG-DSPYVRAKRAQLVEKDPSRAISLFWAAIN------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL- 82 (479)
Q Consensus 11 ~v~k~p~~-~~pyv~a~~~~L~~gd~eeAi~~y~kAL~------l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l- 82 (479)
.+...|.. ...+...+.++...|++++|+.+|.+++. ..+....++.++|.++...|++++|+..|++++.+
T Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 96 (203)
T 3gw4_A 17 ALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL 96 (203)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44455533 34556677888999999999999999998 33445678899999999999999999999999887
Q ss_pred --cCCCh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH
Q 011721 83 --CADDS--QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA 158 (479)
Q Consensus 83 --~P~da--~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a 158 (479)
.+++. .......++.+|..+|++++|+.+|++++.+.+.... ......++.++|.+
T Consensus 97 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 97 ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--------------------QVAIACAFRGLGDL 156 (203)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH
T ss_pred HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--------------------hHHHHHHHHHHHHH
Confidence 45442 2334455789999999999999999999988543210 01122478999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 011721 159 YLQQNDYESAERYYMKALSLESDKNKQCNLAICLI 193 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna~a~nLG~~L~ 193 (479)
|..+|++++|+.+|++|+++.....+.+.++.++.
T Consensus 157 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 191 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMT 191 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999998655443333444443
No 129
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=2.9e-12 Score=103.43 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..++..+|.++...|++++|+..|++++..+|.++... ..++.+|...|++++|+..|++++.+.|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------- 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLY--SNRSAAYAKKGDYQKAYEDGCKTVDLKPD----------- 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH--HHHHHHHHhhccHHHHHHHHHHHHHhCcc-----------
Confidence 45788899999999999999999999999999876543 34567888889999999998888887543
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHH
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICL 192 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L 192 (479)
+..++.++|.+|..+|++++|+.+|+++++++|+++..+. ++.+.
T Consensus 71 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 71 ---------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 3347888999999999999999999999999999887766 77664
No 130
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.45 E-value=2.9e-12 Score=108.26 Aligned_cols=141 Identities=17% Similarity=0.144 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh--H--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS--Q--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da--~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
..++..+|.++...|++++|+..|++++.+.+... . ......++.+|..+|++++|+.+|++++.+.+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 35678899999999999999999999988765421 1 123445788999999999999999999998654211
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHH-HHHHHHHcCCHHHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK------NKQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn------a~a~n-LG~~L~~lGr~dEA 201 (479)
.+....++.++|.+|..+|++++|+.+|++++++.+.. ...+. ||.++..+|++++|
T Consensus 85 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 85 ----------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 01123588999999999999999999999999884322 23455 99999999999999
Q ss_pred HH-HHHHHHhcCC
Q 011721 202 KS-LLQAVRASSR 213 (479)
Q Consensus 202 i~-l~kAL~l~P~ 213 (479)
+. +.+++.+...
T Consensus 149 ~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 149 MHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 99 8888887654
No 131
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.45 E-value=1.9e-12 Score=114.06 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|..|.+.|++++|+..|.+++.+.+...... .|.++.
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------------~~~~~~----------------------- 54 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILRE------------------KPGEPE----------------------- 54 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS------------------CTTSHH-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccC------------------CCCHHH-----------------------
Confidence 467889999999999999999999855432110 111111
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
...++|.+..++. +|.||..+|++++|+. +.++|.++|++..+.. ......++..+++..+.+++.++|.+.
T Consensus 55 -~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 55 -WVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp -HHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 1345677777776 9999999999999999 9999999999987533 122344667777788888888899876
No 132
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.44 E-value=4.9e-13 Score=114.41 Aligned_cols=96 Identities=13% Similarity=-0.031 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|.++...|++++|+..|+++++++|. +..++++||.++..+|++++|+.+|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~ 75 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE--------------------------REEAWRSLGLTQAENEKDGLAIIALN 75 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3567888999999999999999988554 44599999999999999999999999
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
+|++++|+++.++. ||.+|..+|++++|+. +.+++.++|++.
T Consensus 76 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999998887 9999999999999999 999999999764
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.44 E-value=2.4e-12 Score=119.96 Aligned_cols=145 Identities=13% Similarity=-0.000 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC----CHHHHHHH
Q 011721 36 SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK----RIEEEIEL 111 (479)
Q Consensus 36 eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG----r~deAie~ 111 (479)
.+|+.+|+++.+. .++.+++.||.+|...+++++|+..|+++... .++.+.+ .|+.+|.. | ++++|+.+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~--~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALA--LLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHH--HHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHH--HHHHHHHc-CCCCCCHHHHHHH
Confidence 3588999999986 46889999999999999999999999999875 4454443 46677887 7 99999999
Q ss_pred HHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC--CHHH
Q 011721 112 LKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ----QNDYESAERYYMKALSLESD--KNKQ 185 (479)
Q Consensus 112 lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~----lGdydeA~~~yrKALeLdPd--na~a 185 (479)
|++|++. .++.++++||.+|.. .+++++|+.+|++|+++.|. ++.+
T Consensus 76 ~~~A~~~----------------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a 127 (212)
T 3rjv_A 76 AEKAVEA----------------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA 127 (212)
T ss_dssp HHHHHHT----------------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred HHHHHHC----------------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence 9999654 234589999999998 99999999999999999994 5777
Q ss_pred HH-HHHHHHH----cCCHHHHHH-HHHHHHhcCCCcc
Q 011721 186 CN-LAICLIR----LNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 186 ~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++ ||.+|.. .+++++|+. +.+++.+ |+++.
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~ 163 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGY 163 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHH
Confidence 76 9999999 899999999 8889888 55544
No 134
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.44 E-value=2.6e-14 Score=150.66 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.++..+|.++..+|++++|++.|+++++++|+++.... .++.+|..+|++++|+..|++|++++|.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~--~lg~~~~~~g~~~~A~~~~~~al~l~p~------------ 72 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG--NRSLAYLRTECYGYALGDATRAIELDKK------------ 72 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHSCTT------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCC------------
Confidence 34566777788888888888888888888888765443 3567788888888888888888887543
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHH--HHHcCCHHHHHH-HH----
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAIC--LIRLNRIAEAKS-LL---- 205 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~--L~~lGr~dEAi~-l~---- 205 (479)
++.+++++|.+|..+|++++|+.+|++|++++|++..++. ++.+ +..+|++++|+. +.
T Consensus 73 --------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~ 138 (477)
T 1wao_1 73 --------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 138 (477)
T ss_dssp --------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCS
T ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 3348889999999999999999999999999999887766 8877 888899999999 77
Q ss_pred -------HHHHhcCCCc
Q 011721 206 -------QAVRASSRNE 215 (479)
Q Consensus 206 -------kAL~l~P~n~ 215 (479)
+++.++|+..
T Consensus 139 ~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 139 VVDSLDIESMTIEDEYS 155 (477)
T ss_dssp TTTCCTTSSCCCCTTCC
T ss_pred hHhhhhhhhcccccccc
Confidence 6777777653
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.44 E-value=7.6e-13 Score=113.23 Aligned_cols=101 Identities=12% Similarity=-0.030 Sum_probs=74.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
++.+|.++...|++++|+..|++++..+|+++..++ .+|.+|...|++++|+..|+++++++|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~--~lg~~~~~~g~~~~A~~~~~~al~l~P~-------------- 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWR--SLGLTQAENEKDGLAIIALNHARMLDPK-------------- 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------
Confidence 566778888888888888888888888888766544 3567778888888888888888877544
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
+..++++||.+|..+|++++|+.+|+++++++|++..
T Consensus 84 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 84 ------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 3348889999999999999999999999999998753
No 136
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.43 E-value=2.5e-12 Score=105.74 Aligned_cols=123 Identities=11% Similarity=0.118 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
...++..+|.++...|++++|+..|++++..+|.++... ..++.+|...|++++|+.+|++++.+.|.... .
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~-- 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYI--TNQAAVYFEKGDYNKCRELCEKAIEVGRENRE----D-- 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT----C--
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH--HHHHHHHHHhccHHHHHHHHHHHHhhccccch----h--
Confidence 356788999999999999999999999999999886544 34678899999999999999999998765311 0
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN 196 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG 196 (479)
.+....+++++|.+|..+|++++|+.+|++++++.| ++.... ++.++..++
T Consensus 75 -------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 75 -------------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 011145899999999999999999999999999999 465555 877766544
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.42 E-value=5e-13 Score=121.69 Aligned_cols=150 Identities=15% Similarity=0.032 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
.....+......|++++|.+.+.......+..+.. ...+|.+|...|++++|+..|++++.+.|........ ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~ 79 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFD--IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ----IL 79 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH----HH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh----hH
Confidence 44556777788889999988876544443333322 2346789999999999999999999987763311100 00
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
. -....-...+++++|.+|..+|+|++|+.+|+++++++|++..++. +|.+|..+|++++|+. +.+++.++|
T Consensus 80 ~------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 80 L------DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp H------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred H------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 0 0000011368999999999999999999999999999999998887 9999999999999999 999999999
Q ss_pred CCcc
Q 011721 213 RNEK 216 (479)
Q Consensus 213 ~n~~ 216 (479)
++..
T Consensus 154 ~~~~ 157 (198)
T 2fbn_A 154 NNLD 157 (198)
T ss_dssp TCHH
T ss_pred CcHH
Confidence 8755
No 138
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.7e-12 Score=108.63 Aligned_cols=119 Identities=12% Similarity=-0.010 Sum_probs=78.8
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC
Q 011721 48 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG 126 (479)
Q Consensus 48 l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~ 126 (479)
.++.....++.+|.++...|++++|+..|++++..+|++.. ......++.+|...|++++|+..|++++.+.|.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----- 97 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG----- 97 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-----
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-----
Confidence 34566777888888888888888888888888888886511 122233455666666666666666666665332
Q ss_pred CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHH
Q 011721 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICL 192 (479)
Q Consensus 127 ~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L 192 (479)
+..+++++|.+|..+|++++|+.+|+++++++|++..++. ++.+.
T Consensus 98 ---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 ---------------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 2236667777777777777777777777777777666554 55443
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.42 E-value=3.5e-12 Score=105.76 Aligned_cols=118 Identities=9% Similarity=0.038 Sum_probs=103.7
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
...+...+.+++..+++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++..+|.++...+ .++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT--RKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH--HHHHH
Confidence 4456677788899999999999999999999999999999999999999999999999999999999876544 46789
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
|...|++++|+.+|++++.+.|.. ..++..+|.++..+|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~--------------------------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSC--------------------------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGG--------------------------THHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCc--------------------------hHHHHHHHHHHHHhcC
Confidence 999999999999999999986543 3488899999988774
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.41 E-value=6.4e-13 Score=122.24 Aligned_cols=119 Identities=12% Similarity=-0.013 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC-------ChH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-------DSQ---ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI 123 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~-------da~---~~l~~aLg~lY~klGr~deAie~lekALkl~p~~l 123 (479)
..+.++|..+...|+|++|+..|++++.++|+ +.. ......++.++..+|++++|+..|++||+++...
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~- 90 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR- 90 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc-
Confidence 45778999999999999999999999999998 322 1233446788999999999999999999983221
Q ss_pred hcCCCchHHHHhhchhHHHhhhhhHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHH
Q 011721 124 ACGGKSTKIARSQGRKTQITLVQELSRIS----GNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAIC 191 (479)
Q Consensus 124 a~~~k~~~~A~~~g~k~~l~L~pe~~~al----~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~ 191 (479)
++++|++..+| +++|.+|..+|+|++|+.+|++|++++|++..... |..+
T Consensus 91 ------------------~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 91 ------------------GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp ------------------CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred ------------------ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 24566777788 99999999999999999999999999999875544 4443
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.41 E-value=7.9e-12 Score=105.42 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES--- 220 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~--- 220 (479)
+..+..++.+|.++...|+|++|+.+|++++.++|+++.++. +|.+|..+|++++|+. +.+++.++|++..+...
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 344568999999999999999999999999999999998887 9999999999999999 99999999998764221
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCC
Q 011721 221 YAKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 221 ~~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
.....++..+++..+.+++...|.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 112223344444444445544554
No 142
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.41 E-value=5.5e-12 Score=105.31 Aligned_cols=110 Identities=9% Similarity=-0.003 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
+++.+|.++...|++++|+..|++++..+|++... .....+|.+|...|++++|+..|++++..+|...
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---------- 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---------- 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc----------
Confidence 56788899999999999999999999988887521 1223356777778888888888887777755421
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
..+.+++++|.+|..+|++++|+.+|+++++..|++..+..
T Consensus 74 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 74 -------------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp -------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred -------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 11347788888888888888888888888888888775543
No 143
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.41 E-value=3.4e-12 Score=107.78 Aligned_cols=141 Identities=15% Similarity=0.081 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC--h--HHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD--S--QES 90 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d--a--~~~ 90 (479)
.+...+.++...|++++|+.+|.+++...+.. ..++..+|.++...|++++|+..|++++.+.+.. . ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34556677888999999999999999854322 2478899999999999999999999998876542 1 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
....++.+|...|++++|+.+|++++.+.+.... .+....++.++|.+|..+|++++|+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--------------------RIGEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc--------------------hHhHHHHHHHHHHHHHHccCHHHHHH
Confidence 3445788999999999999999999998543210 12234588999999999999999999
Q ss_pred HHHHHHHcCCC
Q 011721 171 YYMKALSLESD 181 (479)
Q Consensus 171 ~yrKALeLdPd 181 (479)
+|++++++...
T Consensus 151 ~~~~a~~~~~~ 161 (164)
T 3ro3_A 151 FAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 144
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.41 E-value=1.3e-11 Score=124.75 Aligned_cols=181 Identities=12% Similarity=-0.013 Sum_probs=133.3
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGD--RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p--~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
+.+.+...+.....+..++.++...|++++|+.++.+.|..+| ....++..++.+|..+|+.+.|.+.++++...+|+
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 3444444333334445667778888999999999988888876 77788888888889999999999999888888883
Q ss_pred ----ChHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 86 ----DSQESLDNVLLELYKRSK--RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 86 ----da~~~l~~aLg~lY~klG--r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
+-...+.++.+.++...| ++.+|...|+++...+|... ....+++ ++
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~------------------------~~~lLln---~~ 221 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK------------------------TQLGLLN---LH 221 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH------------------------HHHHHHH---HH
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc------------------------cHHHHHH---HH
Confidence 112223333344455555 88888888888776654310 1124444 89
Q ss_pred HHcCCHHHHHHHHHHHHHc----------CCCCHHHH-HHHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 160 LQQNDYESAERYYMKALSL----------ESDKNKQC-NLAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeL----------dPdna~a~-nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+++|++++|+..+++++++ +|+++.++ |+..+...+|+ +|.. +.++...+|+++..
T Consensus 222 ~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 222 LQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 9999999999999988887 58899887 68888888998 8888 77889999999873
No 145
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=1.1e-11 Score=122.60 Aligned_cols=186 Identities=13% Similarity=0.044 Sum_probs=133.4
Q ss_pred HHHHHhhCCCCCcH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCChHHHHHHH
Q 011721 8 LFHVIHKVPAGDSP-----YVRAKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAI 76 (479)
Q Consensus 8 ~~~~v~k~p~~~~p-----yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~GrydEAie~l 76 (479)
+..++...|.++.. +...+.++...|++++|+.+|.+++...+.. ..++.++|.++..+|++++|+..|
T Consensus 37 ~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 116 (373)
T 1hz4_A 37 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 116 (373)
T ss_dssp HHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455566665532 3344567788999999999999999853321 244788999999999999999999
Q ss_pred HHHHHhcCCC-----h-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHH
Q 011721 77 KSFRCLCADD-----S-QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSR 150 (479)
Q Consensus 77 ekal~l~P~d-----a-~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~ 150 (479)
++++.+.+.. + .......++.+|...|++++|+.+|++++.+.+.... +....
T Consensus 117 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------~~~~~ 175 (373)
T 1hz4_A 117 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP---------------------QQQLQ 175 (373)
T ss_dssp HHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG---------------------GGGHH
T ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc---------------------HHHHH
Confidence 9998876321 1 2333445788999999999999999999998654210 11224
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C-HHH--H--H-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESD--K-NKQ--C--N-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPd--n-a~a--~--n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
++.++|.++...|++++|+.+|++++.+.+. . ... . . ++.++...|++++|.. +.+++...|.+
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 248 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc
Confidence 7788888888889999999998888887432 2 111 1 1 3455778888888888 77777666543
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=4e-12 Score=137.49 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 34 DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 34 d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr----------ydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
-.++|+.++.++|..+|++..+++..+.++...|+ +++|++.+.+++..+|++..++.+.. .++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~--w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC--WLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH--HHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcc
Confidence 35788999999999999999999999999999998 99999999999999999988776654 5788899
Q ss_pred --CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 011721 104 --RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN-DYESAERYYMKALSLES 180 (479)
Q Consensus 104 --r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG-dydeA~~~yrKALeLdP 180 (479)
++++|++.+.++++++|+. ..+|++.|+++...| .+++|++++.++++++|
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N--------------------------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 122 EPNWARELELCARFLEADERN--------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTC--------------------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred cccHHHHHHHHHHHHhhcccc--------------------------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence 7799999999999986653 349999999999999 99999999999999999
Q ss_pred CCHHHHH-HHHHHHHc--------------CCHHHHHH-HHHHHHhcCCCcc
Q 011721 181 DKNKQCN-LAICLIRL--------------NRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 181 dna~a~n-LG~~L~~l--------------Gr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++..+++ +|.++..+ +++++|+. +.+|+.++|++..
T Consensus 176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 9999998 99999885 66899999 8899999999865
No 147
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=8.5e-12 Score=130.79 Aligned_cols=181 Identities=10% Similarity=-0.010 Sum_probs=147.9
Q ss_pred HHHHHh-hCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 8 LFHVIH-KVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 8 ~~~~v~-k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~-~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
+..++. ..|.....+...+.++...|++++|...|++++..+|.+. .++..+|.++.+.|++++|+++|++++...|.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 344454 3565555566667777888999999999999999999875 68999999999999999999999999999888
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
.....+..++ ..|...|++++|+.+|+++++..|. ++.++.++|.++..+|++
T Consensus 389 ~~~~~~~~a~-~~~~~~~~~~~A~~~~e~al~~~p~--------------------------~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 389 RHHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGD--------------------------IPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp CTHHHHHHHH-HHHHHTCCHHHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHTTTTCH
T ss_pred chHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHhCCCH
Confidence 7655443332 2345799999999999999998554 345899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHH----HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 166 ESAERYYMKALSLESDKNK----QCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 166 deA~~~yrKALeLdPdna~----a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
++|..+|++|+...|.++. .+. .+......|+.+.+.. ..+++...|++.
T Consensus 442 ~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 442 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 9999999999999876653 565 6777888999999999 788888888543
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.39 E-value=1.1e-11 Score=101.51 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+.+++..+++++|+.+|.+++...|+...++..+|.++...|++++|+..|++++..+|+++... ..++.+|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY--GRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH--HHHHHHHH
Confidence 4556677888999999999999999999999999999999999999999999999999999999987554 44678999
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
..|++++|+..|++++.+.|. +..++..+|.++..+|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~--------------------------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPD--------------------------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCcc--------------------------chHHHHHHHHHHHHHhcC
Confidence 999999999999999998554 334889999999999886
No 149
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.38 E-value=4.2e-11 Score=124.25 Aligned_cols=184 Identities=17% Similarity=0.122 Sum_probs=144.1
Q ss_pred CcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhcCCChHHH
Q 011721 19 DSPYVRAKRAQLV----EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 19 ~~pyv~a~~~~L~----~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~----~GrydEAie~lekal~l~P~da~~~ 90 (479)
...+...+.++.. .+++++|+.+|++++..+ +..+++.||.+|.. .+++++|+..|+++... .++.+.
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~ 294 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQ 294 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHH
Confidence 3456677777775 899999999999999864 46789999999999 99999999999998765 344433
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhchhHH----h--c-C-C--CchHHHHhhchhHHHhhhhhHHHHHHHH
Q 011721 91 LDNVLLELYKRS-----KRIEEEIELLKRKLKKTEEVI----A--C-G-G--KSTKIARSQGRKTQITLVQELSRISGNL 155 (479)
Q Consensus 91 l~~aLg~lY~kl-----Gr~deAie~lekALkl~p~~l----a--~-~-~--k~~~~A~~~g~k~~l~L~pe~~~al~nL 155 (479)
..|+.+|... +++++|+..|+++++..+... + + . + .....|....++. +...++.++++|
T Consensus 295 --~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a---~~~~~~~a~~~L 369 (490)
T 2xm6_A 295 --YYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKA---AAKGEKAAQFNL 369 (490)
T ss_dssp --HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH---HHTTCHHHHHHH
T ss_pred --HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHH---HHCCCHHHHHHH
Confidence 3467888888 999999999999998743211 0 0 0 1 1223444333332 234667899999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcCC
Q 011721 156 AWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 156 G~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P~ 213 (479)
|.+|.. .+++++|+.+|++|++.. ++.++. ||.+|.. .+++++|+. +.+++...|+
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999999 999999999999999874 577776 9999999 899999999 9999999954
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.38 E-value=3.3e-13 Score=134.74 Aligned_cols=180 Identities=11% Similarity=0.023 Sum_probs=126.8
Q ss_pred HHHHHHhhCCCCCcHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------------HHHHH
Q 011721 7 ELFHVIHKVPAGDSPYVRA-------KRAQLVEKDPSRAISLFWAAINAGDRVD---------------------SALKD 58 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a-------~~~~L~~gd~eeAi~~y~kAL~l~p~~~---------------------~Al~~ 58 (479)
-|..++...|.-+...... ..+....++..+++..+.+++.+.|... +....
T Consensus 28 ~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~La 107 (282)
T 4f3v_A 28 LFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMG 107 (282)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHH
T ss_pred HHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHH
Confidence 3555666667666665544 4455555556677777777777655432 33444
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhch
Q 011721 59 MAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGR 138 (479)
Q Consensus 59 LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~ 138 (479)
++.+|...|+|++|++.|..++...|++. ..+.++.+|.+.|++++|+.+|++++...+..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~---~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~---------------- 168 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHL---VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF---------------- 168 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHH---HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH----------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc----------------
Confidence 67778888888888888877777677654 23445567888888888888887555431000
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 139 KTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE--SD-KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 139 k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd--Pd-na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
....++++||.++..+|++++|+.+|++++... |. ..++.. +|.|+..+|+.++|.. +.+++..+|+
T Consensus 169 --------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 169 --------LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred --------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 012488999999999999999999999998654 65 445555 9999999999999999 8888999996
No 151
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.38 E-value=1.4e-11 Score=123.85 Aligned_cols=162 Identities=11% Similarity=0.064 Sum_probs=134.2
Q ss_pred HHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhcCCChHHHHHHHHH--HHHHHc--
Q 011721 30 LVEKD-PSRAISLFWAAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRCLCADDSQESLDNVLL--ELYKRS-- 102 (479)
Q Consensus 30 L~~gd-~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G--rydEAie~lekal~l~P~da~~~l~~aLg--~lY~kl-- 102 (479)
+..+. .++|+.++.++|.++|++..+++..+.++...| ++++|++.+..++..+|++..+..+.... .+....
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 34454 478999999999999999999999999999999 99999999999999999998776554321 122556
Q ss_pred -CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcC
Q 011721 103 -KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE--SAERYYMKALSLE 179 (479)
Q Consensus 103 -Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd--eA~~~yrKALeLd 179 (479)
+++++++.++.+++.++|+.. .+|++.++++..+|.++ ++++++.++++++
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny--------------------------~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNH--------------------------HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCH--------------------------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCCCCH--------------------------HHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 899999999999999866543 48888888888888888 8888888888888
Q ss_pred CCCHHHHH-HHHHHHHcCC------HHHHHH-HHHHHHhcCCCccc
Q 011721 180 SDKNKQCN-LAICLIRLNR------IAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr------~dEAi~-l~kAL~l~P~n~~a 217 (479)
|.|..+++ .+.++..+|+ +++++. +.++|..+|+|..+
T Consensus 177 ~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~Sa 222 (306)
T 3dra_A 177 LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPST 222 (306)
T ss_dssp TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccH
Confidence 88888877 8888888877 888888 77888888887653
No 152
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.38 E-value=1.9e-11 Score=118.44 Aligned_cols=135 Identities=11% Similarity=-0.001 Sum_probs=107.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHH---HhcCCChHH--HHHH
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFR---CLCADDSQE--SLDN 93 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~GrydEAie~lekal---~l~P~da~~--~l~~ 93 (479)
.+.++...|++++|+.+|.+|+...+.. ..++.++|.+|..+|++++|+.+|++++ ...|++... ...+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 4455667789999999999999754332 5689999999999999999999999998 556665422 3445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHH-HHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESA-ERYY 172 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA-~~~y 172 (479)
.+|.+|..+|++++|+.+|++++.+.+.... ......+++++|.+|..+|++++| ..+|
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~--------------------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~ 260 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINS--------------------MALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB--------------------CSSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc--------------------HHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 5789999999999999999999998643111 011235899999999999999999 8889
Q ss_pred HHHHHcC
Q 011721 173 MKALSLE 179 (479)
Q Consensus 173 rKALeLd 179 (479)
++|+.+.
T Consensus 261 ~~Al~~~ 267 (293)
T 2qfc_A 261 KKASFFF 267 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999763
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.38 E-value=2.1e-12 Score=103.58 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
+|++..++..+|.++...|++++|+..|++++..+|.+..... .++.+|..+|++++|+..|++++++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWL--MKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH--HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444555666666666666666666666666666665543221 2333444444444444444444443
No 154
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.38 E-value=4.6e-13 Score=134.46 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
...++..+|.++...|+|++|+..|++++.+.|++.. +...|++.+++..+. .
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~----------~~~~~~~~~~~~~l~----~------------- 230 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM----------FQLYGKYQDMALAVK----N------------- 230 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH----------HTCCHHHHHHHHHHH----T-------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh----------hhhcccHHHHHHHHH----H-------------
Confidence 3567888999999999999999999999999987531 112222232222110 0
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
.+++++|.+|+.+|+|++|+.+|++||+++|++..+++ +|.+|..+|++++|+. +.+++.
T Consensus 231 ------------------~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 231 ------------------PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp ------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred ------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 14455555555555555555555555555555554444 5555555555555555 444555
Q ss_pred hcCCCc
Q 011721 210 ASSRNE 215 (479)
Q Consensus 210 l~P~n~ 215 (479)
++|++.
T Consensus 293 l~p~~~ 298 (338)
T 2if4_A 293 YAPDDK 298 (338)
T ss_dssp ------
T ss_pred HCCCCH
Confidence 555443
No 155
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.37 E-value=2.1e-12 Score=108.46 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
.+|++++|+.+|++++++.+. +|++..++++||.+|..+|+|++|+.+|+++++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~-----------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ-----------------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP 58 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC-----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHcCCC-----------------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 368889999999999887211 233456999999999999999999999999999999
Q ss_pred CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 181 DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 181 dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++.++. ||.+|..+|++++|+. +.+++...|++..
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 9998887 9999999999999999 9999999998754
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.37 E-value=2.9e-11 Score=123.15 Aligned_cols=187 Identities=11% Similarity=0.041 Sum_probs=154.0
Q ss_pred HcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 31 VEKDP-SRAISLFWAAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 31 ~~gd~-eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr----------ydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..|++ ++|+.++.++|..+|++..+++..+.++...++ +++++..+..++..+|++..++.+.. .++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~--wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC--WLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH--HHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH--HHH
Confidence 34555 479999999999999999999999999988776 78999999999999999988776544 567
Q ss_pred HHcCC--HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 011721 100 KRSKR--IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND-YESAERYYMKAL 176 (479)
Q Consensus 100 ~klGr--~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd-ydeA~~~yrKAL 176 (479)
...|+ ++++++++.++++++|.. ..+|++.++++...|. ++++++++.+++
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprN--------------------------y~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERN--------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTC--------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 78884 899999999999986654 3499999999999999 699999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHc--------------CCHHHHHH-HHHHHHhcCCCccchH--HH-H-----------HHHH
Q 011721 177 SLESDKNKQCN-LAICLIRL--------------NRIAEAKS-LLQAVRASSRNEKMDE--SY-A-----------KSFE 226 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~l--------------Gr~dEAi~-l~kAL~l~P~n~~a~~--~~-~-----------k~~~ 226 (479)
+++|.|..+++ ++.++..+ +.+++++. +.+++..+|+|..+-. .. + ...+
T Consensus 173 ~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~ 252 (331)
T 3dss_A 173 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKST 252 (331)
T ss_dssp HHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHH
Confidence 99999999988 99988887 56899999 8899999999876421 11 1 1224
Q ss_pred HHHHHHHHHHhhhhcCCCC
Q 011721 227 HASLMLTELESQSMLQPTD 245 (479)
Q Consensus 227 rA~eaL~el~~a~~~~P~~ 245 (479)
...+.+..+...+.+.|+.
T Consensus 253 ~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 253 VLQSELESCKELQELEPEN 271 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhhCccc
Confidence 5667777777777888874
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.37 E-value=7.5e-13 Score=138.36 Aligned_cols=169 Identities=17% Similarity=0.112 Sum_probs=126.8
Q ss_pred CHHHHHHHHHH----HHHcCCCcHHHHHHHHHHH------------HHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011721 34 DPSRAISLFWA----AINAGDRVDSALKDMAVVM------------KQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97 (479)
Q Consensus 34 d~eeAi~~y~k----AL~l~p~~~~Al~~LA~vL------------~~~GrydEAie~lekal~l~P~da~~~l~~aLg~ 97 (479)
.++.|+..+.+ +|.++|.+ +|.+.|... ...+++++|+..|+.++...|+.+... ..+|.
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~--~~~G~ 276 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIV--KEKGT 276 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHH--HHHHH
Confidence 45666666666 56667754 444444322 245678889988888888887765443 34678
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
+|.++|+|++|+..|++|+.+.|....+. .. ....+.+....+|+++|.+|+.+|+|++|+.+|++||+
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---~~--------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLS---EK--------ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCC---HH--------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCC---hH--------HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999999999999977642110 00 01123444567999999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
++|+++.++. +|.+|..+|++++|+. +.+++.++|++..+
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999998887 9999999999999999 99999999998763
No 158
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.36 E-value=3e-12 Score=130.84 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.++..+|.++...|+|++|+..|++++.+.|... +.....+++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------------------~~~~~~~~~----------------- 266 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------------------AAAEDADGA----------------- 266 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------------HHSCHHHHG-----------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------------------cccChHHHH-----------------
Confidence 4578889999999999999999998887544210 000011111
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.+.|....+++++|.+|..+|+|++|+.+|++||+++|+++.++. +|.+|..+|++++|+. +.+++.++
T Consensus 267 ---------~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 267 ---------KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp ---------GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 122334456666677777777777777777777777776666655 6777777777777766 66666666
Q ss_pred CCCcc
Q 011721 212 SRNEK 216 (479)
Q Consensus 212 P~n~~ 216 (479)
|++..
T Consensus 338 P~~~~ 342 (370)
T 1ihg_A 338 PEDKA 342 (370)
T ss_dssp TTCHH
T ss_pred CCCHH
Confidence 66543
No 159
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.36 E-value=2.1e-11 Score=122.60 Aligned_cols=176 Identities=6% Similarity=-0.038 Sum_probs=145.8
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHH----HHC---CChHHHHHHHHH
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEK--DPSRAISLFWAAINAGDRVDSALKDMAVVM----KQL---DRSEEAIEAIKS 78 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~g--d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL----~~~---GrydEAie~lek 78 (479)
..+++...|+.-......+.+....+ ++++|+.++.++|..+|++..+++..+.++ ... ++++++++.+.+
T Consensus 56 t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~ 135 (306)
T 3dra_A 56 TELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEA 135 (306)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHH
T ss_pred HHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 34668888887666666666666667 999999999999999999999999999999 777 899999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 79 FRCLCADDSQESLDNVLLELYKRSKRIE--EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 79 al~l~P~da~~~l~~aLg~lY~klGr~d--eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
++..+|++..+..+.. .++...|+++ ++++++.++++++|... .++.+.+
T Consensus 136 ~l~~~pkny~aW~~R~--~vl~~l~~~~~~~EL~~~~~~i~~d~~N~--------------------------sAW~~R~ 187 (306)
T 3dra_A 136 MLSSDPKNHHVWSYRK--WLVDTFDLHNDAKELSFVDKVIDTDLKNN--------------------------SAWSHRF 187 (306)
T ss_dssp HHHHCTTCHHHHHHHH--HHHHHTTCTTCHHHHHHHHHHHHHCTTCH--------------------------HHHHHHH
T ss_pred HHHhCCCCHHHHHHHH--HHHHHhcccChHHHHHHHHHHHHhCCCCH--------------------------HHHHHHH
Confidence 9999999987766543 5678899998 99999999999866533 4888888
Q ss_pred HHHHHcCC------HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH--HHHHHHhc
Q 011721 157 WAYLQQND------YESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS--LLQAVRAS 211 (479)
Q Consensus 157 ~ay~~lGd------ydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~--l~kAL~l~ 211 (479)
.++...|. ++++++++.++|.++|+|..+++ ++.++...|+..+++. +.+.+.++
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 88888887 89999999999999999998887 8888888888666554 44455554
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.35 E-value=6e-11 Score=120.79 Aligned_cols=181 Identities=6% Similarity=-0.070 Sum_probs=145.7
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC--hHHHHHHH
Q 011721 9 FHVIHKVPAGDSPYVRAKRAQLVEKD----------PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDR--SEEAIEAI 76 (479)
Q Consensus 9 ~~~v~k~p~~~~pyv~a~~~~L~~gd----------~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr--ydEAie~l 76 (479)
.+++...|..-......+.+....+. +++++.++..+|..+|++..+++..+.++...|+ ++++++.+
T Consensus 54 ~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 133 (331)
T 3dss_A 54 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 133 (331)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHH
Confidence 45566777654443333333322222 6899999999999999999999999999999995 89999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHH
Q 011721 77 KSFRCLCADDSQESLDNVLLELYKRSKR-IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNL 155 (479)
Q Consensus 77 ekal~l~P~da~~~l~~aLg~lY~klGr-~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nL 155 (479)
.+++..+|.+..++.+.. .+....|+ ++++++++.+++.++|.. ..+|+++
T Consensus 134 ~k~l~~dprNy~AW~~R~--~vl~~l~~~~~eel~~~~~~I~~~p~N--------------------------~SAW~~R 185 (331)
T 3dss_A 134 ARFLEADERNFHCWDYRR--FVAAQAAVAPAEELAFTDSLITRNFSN--------------------------YSSWHYR 185 (331)
T ss_dssp HHHHHHCTTCHHHHHHHH--HHHHHTTCCHHHHHHHHHHHHHHCSCC--------------------------HHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHH--HHHHHhCcCHHHHHHHHHHHHHHCCCC--------------------------HHHHHHH
Confidence 999999999987765543 56778898 699999999999886553 3489999
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc-----------CCHHHHHH-HHHHH
Q 011721 156 AWAYLQQ--------------NDYESAERYYMKALSLESDKNKQCN-LAICLIRL-----------NRIAEAKS-LLQAV 208 (479)
Q Consensus 156 G~ay~~l--------------GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~l-----------Gr~dEAi~-l~kAL 208 (479)
+.++..+ +.++++++++.+++.++|+|..+++ +..++... +.+++++. +.+.+
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 9998887 5699999999999999999999887 65555544 46899999 99999
Q ss_pred HhcCCCccc
Q 011721 209 RASSRNEKM 217 (479)
Q Consensus 209 ~l~P~n~~a 217 (479)
.++|++.+.
T Consensus 266 e~~pd~~w~ 274 (331)
T 3dss_A 266 ELEPENKWC 274 (331)
T ss_dssp HHCTTCHHH
T ss_pred hhCcccchH
Confidence 999998764
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.35 E-value=2.7e-11 Score=101.03 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=87.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
++.++...|++++|+..|++++..+|... ....+++++|.+|..+|+|++|+.+|++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 64 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGV-----------------------YTPNALYWLGESYYATRNFQLAEAQFRD 64 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSST-----------------------THHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCc-----------------------ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 56789999999999999999999876532 1225889999999999999999999999
Q ss_pred HHHcCCCC---HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 175 ALSLESDK---NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 175 ALeLdPdn---a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++.++|++ +.++. +|.+|..+|++++|+. +.+++...|++..
T Consensus 65 ~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 99999999 77776 9999999999999999 8899999998754
No 162
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.34 E-value=1.9e-12 Score=108.71 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHH
Q 011721 32 EKDPSRAISLFWAAINA---GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l---~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deA 108 (479)
.|++++|+.+|.+++.. +|++..++.+||.+|..+|++++|+..|++++.++|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--------------------- 61 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ--------------------- 61 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---------------------
Confidence 35566666666666666 355555666666666666666666666666666555542
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN- 187 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n- 187 (479)
.+++++|.+|..+|++++|+.+|++++++.|+++....
T Consensus 62 -----------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 62 -----------------------------------------ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred -----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 36777888888888888888888888888888876654
Q ss_pred HHHHHHHc
Q 011721 188 LAICLIRL 195 (479)
Q Consensus 188 LG~~L~~l 195 (479)
...+....
T Consensus 101 ~~ai~~~~ 108 (117)
T 3k9i_A 101 KQAILFYA 108 (117)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 43333333
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2e-11 Score=122.40 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----------------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRV-----------------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~-----------------~~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
.-+..+...+..|++++|+..|.++++..++. ..++..||.+|..+|++++|++.|.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34444556778999999999999999976652 2478999999999999999999999998876
Q ss_pred CCChH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 84 ADDSQ----ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 84 P~da~----~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
+.... ..+...++.++...|++++|+.++++++.+.+.... ......++.+||.+|
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR--------------------VFLKHSLSIKLATLH 145 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC--------------------CSSHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc--------------------cHHHHHHHHHHHHHH
Confidence 65432 233445677888899999999999999988544211 111235889999999
Q ss_pred HHcCCHHHHHHHHHHHHHcC------CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 160 LQQNDYESAERYYMKALSLE------SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLd------Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
..+|+|++|+.++++++... +.....+. +|.+|..+|++++|.. +.+++...+.
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 99999999999999999862 22235566 9999999999999999 8888876553
No 164
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.33 E-value=1.2e-12 Score=130.59 Aligned_cols=187 Identities=12% Similarity=0.025 Sum_probs=148.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHHCCChHHHHHHHHHHHHhcCCChHH--------------
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDM-------AVVMKQLDRSEEAIEAIKSFRCLCADDSQE-------------- 89 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~L-------A~vL~~~GrydEAie~lekal~l~P~da~~-------------- 89 (479)
..+|+..|...|.+++.++|...+++.++ +.++...+++.+++..+++.+.+.|.....
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57999999999999999999999999999 899999999999999999999988864321
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 90 -----SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 90 -----~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
.+.+.++.+|...|+|++|++.|..++.. .|++. +++.+|.++++.|+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------------------------~p~~~-~~~~~a~l~~~~~r 150 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------------------------GSEHL-VAWMKAVVYGAAER 150 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------------------------TCHHH-HHHHHHHHHHHTTC
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------------------CCchH-HHHHHHHHHHHcCC
Confidence 23344668899999999999999876654 34455 88999999999999
Q ss_pred HHHHHHHHHHHHHcC-CCC-HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc--CC-CccchH---HHHHHHHHHHHHHHH
Q 011721 165 YESAERYYMKALSLE-SDK-NKQCN-LAICLIRLNRIAEAKS-LLQAVRAS--SR-NEKMDE---SYAKSFEHASLMLTE 234 (479)
Q Consensus 165 ydeA~~~yrKALeLd-Pdn-a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~--P~-n~~a~~---~~~k~~~rA~eaL~e 234 (479)
|++|+.+|++++... |.. ..++. ||.++..+|++++|+. +.+++... |. ...+.. ..+...++..++...
T Consensus 151 ~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 151 WTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999888764 222 23444 9999999999999999 77777432 32 111111 234555667777777
Q ss_pred HHhhhhcCCC
Q 011721 235 LESQSMLQPT 244 (479)
Q Consensus 235 l~~a~~~~P~ 244 (479)
+++.+..+|.
T Consensus 231 l~~a~a~~P~ 240 (282)
T 4f3v_A 231 LEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHhcCCc
Confidence 7777778997
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.32 E-value=3.1e-11 Score=97.32 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..++.+|...|++++|+..|++++.+.|. +..++.++|.+|..+|++++|+.+|
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~ 61 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH--------------------------NHVLYSNRSAAYAKKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC--------------------------cHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34678899999999999999999988554 3458999999999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++++++|+++..+. +|.++..+|++++|+. +.+++..+|++..
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999998877 9999999999999999 8899999998754
No 166
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.32 E-value=1.3e-10 Score=120.58 Aligned_cols=182 Identities=13% Similarity=0.072 Sum_probs=139.9
Q ss_pred CcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhcCCChHHH
Q 011721 19 DSPYVRAKRAQLV----EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 19 ~~pyv~a~~~~L~----~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~----~GrydEAie~lekal~l~P~da~~~ 90 (479)
...+...+.+++. .+++++|+.+|++++.. .+..+++.||.+|.. .+++++|+..|+++.... ++...
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~ 114 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQ 114 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 3455667777777 89999999999999987 457899999999999 999999999999998764 44443
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhchh-HH---h---cC----CCchHHHHhhchhHHHhhhhhHHHHHHHH
Q 011721 91 LDNVLLELYKR----SKRIEEEIELLKRKLKKTEE-VI---A---CG----GKSTKIARSQGRKTQITLVQELSRISGNL 155 (479)
Q Consensus 91 l~~aLg~lY~k----lGr~deAie~lekALkl~p~-~l---a---~~----~k~~~~A~~~g~k~~l~L~pe~~~al~nL 155 (479)
..|+.+|.. .+++++|+..|+++++.... .. + .. ......|...+++. +...++.++++|
T Consensus 115 --~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a---~~~~~~~a~~~L 189 (490)
T 2xm6_A 115 --QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA---AEQGNVWSCNQL 189 (490)
T ss_dssp --HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---HHTTCHHHHHHH
T ss_pred --HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---HHCCCHHHHHHH
Confidence 346788998 89999999999999886321 10 0 01 12334454444332 234567899999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhc
Q 011721 156 AWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 156 G~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~ 211 (479)
|.+|.. .+++++|+.+|+++++. +++.++. ||.+|.. .+++++|+. +.+++...
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999998 89999999999999876 4566666 9999997 889999999 77777653
No 167
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.32 E-value=3e-11 Score=116.98 Aligned_cols=135 Identities=10% Similarity=0.004 Sum_probs=106.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhc---CCChH--HHHHH
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLC---ADDSQ--ESLDN 93 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~GrydEAie~lekal~l~---P~da~--~~l~~ 93 (479)
.+.+++..+++++|+.+|.+|+...+.. ..++.++|.+|..+|++++|+.+|++++... |.+.. .....
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 4555666789999999999999853321 3478999999999999999999999998642 23321 22345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC-CHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN-DYESAERYY 172 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG-dydeA~~~y 172 (479)
.+|.+|..+|++++|+.+|++|+++.+.... ......+++++|.+|..+| .+++|+.+|
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINS--------------------MALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB--------------------CTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc--------------------HHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 5789999999999999999999998654321 0112358999999999999 579999999
Q ss_pred HHHHHcC
Q 011721 173 MKALSLE 179 (479)
Q Consensus 173 rKALeLd 179 (479)
++|+.+.
T Consensus 261 ~~Al~i~ 267 (293)
T 3u3w_A 261 KKASFFF 267 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.31 E-value=2.2e-12 Score=136.00 Aligned_cols=128 Identities=10% Similarity=0.000 Sum_probs=109.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
.+++..|++++|+.+|++|++.+|++..++.++|.+|..+|++++|++.|+++++++|+++.... .+|.+|..+|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~--~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY--RRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH--HHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCCHH
Confidence 34567899999999999999999999999999999999999999999999999999999876654 4678999999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH--HHHcCCHHHHHHHHH-----------
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA--YLQQNDYESAERYYM----------- 173 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a--y~~lGdydeA~~~yr----------- 173 (479)
+|+..|++++++.|.. ..++.++|.+ +..+|++++|++.|+
T Consensus 92 eA~~~~~~al~~~p~~--------------------------~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 145 (477)
T 1wao_1 92 AALRDYETVVKVKPHD--------------------------KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 145 (477)
T ss_dssp HHHHHHHHHHHHSTTC--------------------------TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTT
T ss_pred HHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhh
Confidence 9999999999986543 2377888888 899999999999999
Q ss_pred HHHHcCCCC
Q 011721 174 KALSLESDK 182 (479)
Q Consensus 174 KALeLdPdn 182 (479)
++++++|+.
T Consensus 146 ~al~~~~~~ 154 (477)
T 1wao_1 146 ESMTIEDEY 154 (477)
T ss_dssp SSCCCCTTC
T ss_pred hhccccccc
Confidence 999998875
No 169
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.31 E-value=8.7e-11 Score=95.36 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..+...+.++...+++++|+.+|.+++...|....++..+|.++...|++++|+..|++++..+|.+.... ..++.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW--YNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH--HHHHHHH
Confidence 34556677888999999999999999999999999999999999999999999999999999999987544 3467899
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN 163 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG 163 (479)
...|++++|+..|++++.+.|. +..++.++|.++..+|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN--------------------------NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHhcc
Confidence 9999999999999999988554 3347888888887655
No 170
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.31 E-value=4.8e-12 Score=116.29 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELL 112 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~l 112 (479)
+.+++|+..|++++.++|++..++.++|.++...++++.++..++ .+++|+..|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~eAi~~l 69 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHHHHHHH
Confidence 457888888888888888888888888888888887765555321 267888888
Q ss_pred HHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCC
Q 011721 113 KRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN-----------DYESAERYYMKALSLESD 181 (479)
Q Consensus 113 ekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG-----------dydeA~~~yrKALeLdPd 181 (479)
++||+++|. +.++|++||.+|..+| +|++|+.+|++|++++|+
T Consensus 70 e~AL~ldP~--------------------------~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 70 EEALLIDPK--------------------------KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHCTT--------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCcC--------------------------cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 888887544 4458999999999885 899999999999999999
Q ss_pred CHHHHH
Q 011721 182 KNKQCN 187 (479)
Q Consensus 182 na~a~n 187 (479)
+..+..
T Consensus 124 ~~~y~~ 129 (158)
T 1zu2_A 124 NTHYLK 129 (158)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 875443
No 171
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.30 E-value=4.8e-11 Score=105.91 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=111.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHcCCH--H
Q 011721 30 LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL-YKRSKRI--E 106 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l-Y~klGr~--d 106 (479)
+..+++++|+.+|.+++..+|++..++..+|.+|...|++++|+.+|++++.++|+++.... .++.+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA--ALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHH--HHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHHhcCCcchH
Confidence 45688999999999999999999999999999999999999999999999999999876544 35667 8899999 9
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~ 186 (479)
+|+..|++++.++|. +..+++++|.+|..+|++++|+.+|+++++++|++....
T Consensus 99 ~A~~~~~~al~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSN--------------------------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999999998554 335899999999999999999999999999999986443
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=8e-11 Score=99.48 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..++.+|...|++++|+..|++++++.|... ....+++++|.+|..+|+|++|+.+|
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~ 88 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQ-----------------------DQAVLHRNRAACHLKLEDYDKAETEA 88 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-----------------------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcccch-----------------------HHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 4467889999999999999999999865421 11358999999999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++++.++|++..++. +|.+|..+|++++|+. +.+++.++|++..
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 999999999998877 9999999999999999 8999999998743
No 173
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.28 E-value=7.8e-11 Score=122.61 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC----CChHHHHHHHHHHHHhcCCChHHHHH
Q 011721 20 SPYVRAKRAQLVEK---DPSRAISLFWAAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRCLCADDSQESLD 92 (479)
Q Consensus 20 ~pyv~a~~~~L~~g---d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~----GrydEAie~lekal~l~P~da~~~l~ 92 (479)
..+...+.++...| ++++|+.+|++++..++....++++||.+|... +++++|+..|+++. |+++.+.+.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 35555556666666 666666666666666666666566666666544 56666666666655 555544433
Q ss_pred HHHHHH-H--HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC-----C
Q 011721 93 NVLLEL-Y--KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN-----D 164 (479)
Q Consensus 93 ~aLg~l-Y--~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG-----d 164 (479)
|+.+ | ...|++++|+.+|+++++. .++.++++||.+|. .| +
T Consensus 254 --Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------------------------g~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 254 --LAQLLYDFPELGDVEQMMKYLDNGRAA----------------------------DQPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp --HHHHHHHSGGGCCHHHHHHHHHHHHHT----------------------------TCHHHHHHHHHHHH-HCSSSCCC
T ss_pred --HHHHHHhCCCCCCHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHH-cCCCCCCC
Confidence 3334 3 3466666666666666654 23345666666665 34 6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHH
Q 011721 165 YESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVR 209 (479)
Q Consensus 165 ydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~ 209 (479)
+++|+.+|++|+ |+++.++. ||.+|.. ..++++|+. +.++..
T Consensus 303 ~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 303 AKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 666666666666 55665544 6665555 236666666 555544
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.26 E-value=1.1e-10 Score=119.72 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=139.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc-C-CHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS-K-RIEEEI 109 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G-rydEAie~lekal~l~P~da~~~l~~aLg~lY~kl-G-r~deAi 109 (479)
...++|+.++.++|.++|++..+++..+.++...| .++++++.+..++..+|++..+..... .++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~--wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL--LLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH--HHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHhcCCChHHHH
Confidence 45578999999999999999999999999999999 599999999999999999987765543 455666 7 899999
Q ss_pred HHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCC
Q 011721 110 ELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE--------SAERYYMKALSLESD 181 (479)
Q Consensus 110 e~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd--------eA~~~yrKALeLdPd 181 (479)
+++.++|.++|+. ..+++..++++...|.++ ++++++.++++++|.
T Consensus 146 ~~~~k~L~~dpkN--------------------------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 146 EYIHGSLLPDPKN--------------------------YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHHHHHTSSCTTC--------------------------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 9999999886553 349999999999999998 999999999999999
Q ss_pred CHHHHH-HHHHHHHcCC-------HHHHHH-HHHHHHhcCCCcc
Q 011721 182 KNKQCN-LAICLIRLNR-------IAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 182 na~a~n-LG~~L~~lGr-------~dEAi~-l~kAL~l~P~n~~ 216 (479)
|..+++ .+.++..+++ +++++. +.+++.++|+|..
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 999998 9999999987 799999 8899999999865
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.26 E-value=6.3e-12 Score=126.16 Aligned_cols=151 Identities=13% Similarity=0.040 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+..++..+++++|+.+|.+|+...|++. .+...|++++++..+.. ...+.++.+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~~-----------~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVKN-----------PCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHHT-----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 344556677788999999999999999988654 23345566666654421 12334677888
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
++|++++|+.+|+++|+++|. +..+++++|.+|..+|+|++|+.+|++|++++|
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEK--------------------------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 899999999999998887543 335889999999999999999999999999999
Q ss_pred CCHHHHH-HHHHHH-HcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 181 DKNKQCN-LAICLI-RLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 181 dna~a~n-LG~~L~-~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++..++. |+.+.. ..+..+++.. +.+++...|++..
T Consensus 296 ~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9998877 888844 4567777777 8888999887653
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.26 E-value=7.7e-11 Score=96.74 Aligned_cols=95 Identities=12% Similarity=0.150 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..+|.+|...|++++|+.+|++++.+.|. +..+++++|.+|..+|++++|+.+|
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------------~~~~~~~la~~~~~~~~~~~A~~~~ 61 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPT--------------------------NMTYITNQAAVYFEKGDYNKCRELC 61 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------------------------cHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44678899999999999999999998554 3358899999999999999999999
Q ss_pred HHHHHcCCCC-------HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 173 MKALSLESDK-------NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 173 rKALeLdPdn-------a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
++++.+.|++ ...+. +|.+|..+|++++|+. +.+++.+.|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999877 76666 9999999999999999 8899999884
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.26 E-value=5e-11 Score=95.45 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=64.4
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 16 PAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
|.....+...+.+++..|++++|+.+|.+++..+|....++..+|.++...|++++|++.|++++..+|.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4555566777888899999999999999999999999999999999999999999999999999999998
No 178
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.26 E-value=1.5e-11 Score=113.02 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=80.1
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH----------HHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY----------ESAE 169 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy----------deA~ 169 (479)
.+.+++++|+..|+++++++| +++++|+++|.++..++++ ++|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P--------------------------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi 66 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP--------------------------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC--------------------------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHH
Confidence 356778999999999998854 4556999999999999875 5999
Q ss_pred HHHHHHHHcCCCCHHHHH-HHHHHHHcC-----------CHHHHHH-HHHHHHhcCCCcc
Q 011721 170 RYYMKALSLESDKNKQCN-LAICLIRLN-----------RIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 170 ~~yrKALeLdPdna~a~n-LG~~L~~lG-----------r~dEAi~-l~kAL~l~P~n~~ 216 (479)
..|++||+++|++..+++ ||.+|..+| ++++|+. |.+|+.++|++..
T Consensus 67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999887 999999885 8999999 9999999998753
No 179
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.23 E-value=1.8e-10 Score=122.74 Aligned_cols=134 Identities=8% Similarity=-0.018 Sum_probs=108.9
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHh-----cCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCL-----CADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l-----~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
+.+..+..+|+|++|+..|++++++ .|+++. +...+.|+.+|..+|+|++|+.+++++|++.....+.+
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~----- 388 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN----- 388 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-----
Confidence 4455678899999999999999875 456654 23345578999999999999999999999966543311
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHH---HHH-HHHHHHHcCCHHHHH
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-----ESDKNK---QCN-LAICLIRLNRIAEAK 202 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-----dPdna~---a~n-LG~~L~~lGr~dEAi 202 (479)
.|+....++|||.+|..+|+|++|+.+|++|+++ .|+++. ..+ |+.++.+++++++|.
T Consensus 389 -------------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 389 -------------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp -------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2445568999999999999999999999999986 788874 345 999999999999999
Q ss_pred H-HHHHHH
Q 011721 203 S-LLQAVR 209 (479)
Q Consensus 203 ~-l~kAL~ 209 (479)
. +.++.+
T Consensus 456 ~~~~~~~~ 463 (490)
T 3n71_A 456 FMYHKMRE 463 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 9 777654
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.23 E-value=2.5e-10 Score=116.58 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|.+|...|++++|+..|++|+++.+... +....+
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------------------------------------------~~~~~~ 263 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------------------------------------------AAAEDA 263 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------------------------------------HHSCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------------------------------------------cccChH
Confidence 467889999999999999999998743210 122356
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++..++|.+..+++ ||.+|..+|++++|+. +.+++.++|++..+... .....++..+++..+.+++.++|.+..
T Consensus 264 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 264 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 66778888888777 9999999999999999 99999999998775331 223345566777778888888998775
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=8.6e-11 Score=127.05 Aligned_cols=178 Identities=7% Similarity=-0.041 Sum_probs=149.2
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--ChHHHHHH
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKD----------PSRAISLFWAAINAGDRVDSALKDMAVVMKQLD--RSEEAIEA 75 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd----------~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G--rydEAie~ 75 (479)
..+++...|.....+...+.+....++ +++|+.++.++|..+|++..+++..+.++...| ++++|++.
T Consensus 52 ~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~ 131 (567)
T 1dce_A 52 TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL 131 (567)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHH
Confidence 456788888876666666656555555 999999999999999999999999999999999 67999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHH
Q 011721 76 IKSFRCLCADDSQESLDNVLLELYKRSK-RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGN 154 (479)
Q Consensus 76 lekal~l~P~da~~~l~~aLg~lY~klG-r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~n 154 (479)
+.++++++|++..++.+. +.++...| .++++++++.++|+++|. +..+|++
T Consensus 132 ~~k~l~~d~~N~~aW~~R--~~~l~~l~~~~~~el~~~~~~I~~~p~--------------------------n~saW~~ 183 (567)
T 1dce_A 132 CARFLEADERNFHCWDYR--RFVAAQAAVAPAEELAFTDSLITRNFS--------------------------NYSSWHY 183 (567)
T ss_dssp HHHHHHHCTTCHHHHHHH--HHHHHHTCCCHHHHHHHHHTTTTTTCC--------------------------CHHHHHH
T ss_pred HHHHHhhccccccHHHHH--HHHHHHcCCChHHHHHHHHHHHHHCCC--------------------------CccHHHH
Confidence 999999999998776554 35678889 999999999999887554 4459999
Q ss_pred HHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHH------------HHH-HHH
Q 011721 155 LAWAYLQQ--------------NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAE------------AKS-LLQ 206 (479)
Q Consensus 155 LG~ay~~l--------------GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dE------------Ai~-l~k 206 (479)
+|.++..+ +.+++|++++.+|+.++|++..+++ ++.++...+++++ |+. |.+
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~ 263 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSR 263 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEecc
Confidence 99999885 6789999999999999999999988 9999999998766 455 556
Q ss_pred HHHhcCC
Q 011721 207 AVRASSR 213 (479)
Q Consensus 207 AL~l~P~ 213 (479)
++.++|.
T Consensus 264 ~i~~~~~ 270 (567)
T 1dce_A 264 PLTVGSR 270 (567)
T ss_dssp EECTTBT
T ss_pred ceecccc
Confidence 6666654
No 182
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.16 E-value=2.2e-10 Score=95.07 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
.|+++.+++++|.+|..+|++++|+.+|+++++++|++..++. ||.+|..+|++++|+. +.+++.+.|.+.
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 3445569999999999999999999999999999999998887 9999999999999999 999999988543
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.7e-10 Score=93.46 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHH-HHHHHHHcCCHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDK------NKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdn------a~a~n-LG~~L~~lGr~dEAi~ 203 (479)
+++++|.+|..+|+|++|+.+|+++++++|++ ..++. +|.++..+|++++|+.
T Consensus 40 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 40 GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 56667777777777777777777777777776 54444 6777666666655554
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.11 E-value=9.5e-10 Score=117.25 Aligned_cols=133 Identities=11% Similarity=-0.060 Sum_probs=107.9
Q ss_pred HHHcCCHHHHHHHHHHHHH-----cCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----cCCChHH-HHHHH
Q 011721 29 QLVEKDPSRAISLFWAAIN-----AGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRCL-----CADDSQE-SLDNV 94 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~-----l~p~~---~~Al~~LA~vL~~~GrydEAie~lekal~l-----~P~da~~-~l~~a 94 (479)
+..+|++++|+.+|++++. +++++ ..++.+||.+|..+|+|++|+.++++++.+ .|+++.. ...+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3467999999999999997 45554 467889999999999999999999998865 4677653 23344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
||.+|..+|++++|+.+|++|+++.....+.+ .|...+++.+|+.++..++.|++|+..|++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~------------------Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPS------------------HPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999965543211 234456789999999999999999999999
Q ss_pred HHHcC
Q 011721 175 ALSLE 179 (479)
Q Consensus 175 ALeLd 179 (479)
+.+-.
T Consensus 461 ~~~~~ 465 (490)
T 3n71_A 461 MREAA 465 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97644
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.11 E-value=6.7e-10 Score=92.12 Aligned_cols=81 Identities=7% Similarity=-0.066 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 37 RAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKL 116 (479)
Q Consensus 37 eAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekAL 116 (479)
.|+..|.+++..+|++..+++.+|.+|...|++++|+..|++++.++|+++...+ .++.+|..+|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWK--WLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677777777777777777777777777777777777777777777776543322 23344444444444444444444
Q ss_pred Hhc
Q 011721 117 KKT 119 (479)
Q Consensus 117 kl~ 119 (479)
.+.
T Consensus 81 ~~~ 83 (115)
T 2kat_A 81 AAA 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 186
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.09 E-value=4e-09 Score=109.68 Aligned_cols=181 Identities=12% Similarity=0.056 Sum_probs=105.5
Q ss_pred cHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHH----HHHHhcCCChHHHHH
Q 011721 20 SPYVRAKRAQLVEKDP---SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK----SFRCLCADDSQESLD 92 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~---eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~le----kal~l~P~da~~~l~ 92 (479)
..+...+.++...+.. .+|+..+.++...+. ..+++.||.+|...+.+++++.... .+...+|. + .
T Consensus 107 ~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a--~ 179 (452)
T 3e4b_A 107 NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY--PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---C--Y 179 (452)
T ss_dssp SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC--TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---H--H
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---H--H
Confidence 3445555555443322 334444444443322 3455666666666664444444322 22222222 2 2
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHhchhHHh--------c-CC----CchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 93 NVLLELYKRSK---RIEEEIELLKRKLKKTEEVIA--------C-GG----KSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 93 ~aLg~lY~klG---r~deAie~lekALkl~p~~la--------~-~~----k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
+.|+.+|...| ++++|+..|++++...+.... + .+ .....|...+++. . |.++.++++||
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a---a-~g~~~a~~~Lg 255 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI---A-PGYPASWVSLA 255 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH---G-GGSTHHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH---c-CCCHHHHHHHH
Confidence 23445566666 666666666666655432110 0 00 2223333333332 2 56677999999
Q ss_pred HH-H--HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC-----CHHHHHH-HHHHHHhcCCCccc
Q 011721 157 WA-Y--LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN-----RIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 157 ~a-y--~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG-----r~dEAi~-l~kAL~l~P~n~~a 217 (479)
.+ | ...|++++|+.+|++|++.+ ++.+++ ||.+|. .| ++++|+. +.+++ ++++.+
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A 320 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA 320 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence 99 5 57899999999999999654 787776 999998 66 9999999 77877 777654
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.09 E-value=9.4e-10 Score=110.16 Aligned_cols=170 Identities=9% Similarity=0.009 Sum_probs=133.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC----hHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD----SQESL 91 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d----a~~~l 91 (479)
+...+.++...|++++|+.+|.+++...+.. ..++..+|.++...|++++|+..+++++...+.. ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5567788899999999999999998743332 1345678999999999999999999988764422 23445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
...|+.+|..+|+|++|+.++++++........ .+...+++.++|.+|..+|+|++|..+
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 197 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDD--------------------KPSLVDVHLLESKVYHKLRNLAKSKAS 197 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC--------------------STHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhccc--------------------chhHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 566889999999999999999999886332110 133446899999999999999999999
Q ss_pred HHHHHHcCCC---CH----HHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 172 YMKALSLESD---KN----KQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 172 yrKALeLdPd---na----~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
|++++.+.+. .. ..+. +|.++...|+|++|.. +.+++...
T Consensus 198 ~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 198 LTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999988532 22 3345 8999999999999999 88887654
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.08 E-value=3.8e-10 Score=92.76 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|+++.+++++|.+|..+|+|++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++.+.|.+..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 5778889999999999999999999999999999999998887 9999999999999999 9999999875443
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.06 E-value=1.8e-09 Score=84.39 Aligned_cols=46 Identities=33% Similarity=0.434 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN 196 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG 196 (479)
+++++|.+|..+|++++|+.+|+++++++|++..++. ||.++..+|
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 6677888888888888888888888888888877766 888777654
No 190
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.03 E-value=5.6e-09 Score=107.06 Aligned_cols=163 Identities=10% Similarity=0.018 Sum_probs=137.0
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-C-ChHHHHHHHHHHHHhcC
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEK-DPSRAISLFWAAINAGDRVDSALKDMAVVMKQL-D-RSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~g-d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~-G-rydEAie~lekal~l~P 84 (479)
..+++...|..-......+.+....+ ++++++.++.++|..+|++..+++..+.++... + +++++++.+.+++..+|
T Consensus 77 t~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp 156 (349)
T 3q7a_A 77 TEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP 156 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Confidence 45678888887666555555665666 699999999999999999999999999999988 8 99999999999999999
Q ss_pred CChHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 85 DDSQESLDNVLLELYKRSKRIE--------EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~d--------eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
++..+..+.. .++...|+++ ++++++.++|+++|. +..++++++
T Consensus 157 kNy~AW~~R~--wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~--------------------------N~SAW~~R~ 208 (349)
T 3q7a_A 157 KNYHTWAYLH--WLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR--------------------------NNSAWGWRW 208 (349)
T ss_dssp TCHHHHHHHH--HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHhccccccchhhHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHH
Confidence 9987765543 4556666666 899999988888654 334999999
Q ss_pred HHHHHcCC-------HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 157 WAYLQQND-------YESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 157 ~ay~~lGd-------ydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
.++..++. ++++++++.+++.++|+|..+++ +..++...|+-
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 99999997 79999999999999999999987 88888887764
No 191
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.02 E-value=1.4e-08 Score=118.91 Aligned_cols=92 Identities=17% Similarity=0.049 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------------CCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLES-------------------------DKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdP-------------------------dna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
..|..+|.+|.++|+|++|++++++|....+ .+++.+. ++..|...|.|++|+.
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5788899999999999999999999866554 2344555 8888999999999999
Q ss_pred -HHHHHHhcCCCccchH----HHH-HHHHHHHHHHHHHHhhhhc
Q 011721 204 -LLQAVRASSRNEKMDE----SYA-KSFEHASLMLTELESQSML 241 (479)
Q Consensus 204 -l~kAL~l~P~n~~a~~----~~~-k~~~rA~eaL~el~~a~~~ 241 (479)
+.++|.+++.+..+.. .+. -.-++..+.++.+.+...+
T Consensus 1302 LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1302 MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 8888999977654321 111 1124555555555555443
No 192
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=9.2e-09 Score=103.87 Aligned_cols=184 Identities=11% Similarity=0.020 Sum_probs=127.4
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 38 AISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 38 Ai~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALk 117 (479)
|+..|++.+..++....++..+|.++...|++++|+..+.+.+..+|..........++.+|.++|+.+.|.+.+++..+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67777777766555566778999999999999999999999988887221222333456899999999999999999988
Q ss_pred hchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHH-HHHHH
Q 011721 118 KTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNL--AWAYLQQN--DYESAERYYMKALSLESDKNKQCN-LAICL 192 (479)
Q Consensus 118 l~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nL--G~ay~~lG--dydeA~~~yrKALeLdPdna~a~n-LG~~L 192 (479)
.+|+... . +..++.+| |++.+..| ++.+|...|+++.+..|+...... ++ ++
T Consensus 165 ~~~d~~~---------------------~-~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~ 221 (310)
T 3mv2_B 165 AIEDTVS---------------------G-DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LH 221 (310)
T ss_dssp HSCHHHH---------------------H-HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HH
T ss_pred cCccccc---------------------c-chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HH
Confidence 8662100 0 01133444 66677777 999999999999988887333333 44 99
Q ss_pred HHcCCHHHHHH-HHHHHHh----------cCCCccchH-H--H-HHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 193 IRLNRIAEAKS-LLQAVRA----------SSRNEKMDE-S--Y-AKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 193 ~~lGr~dEAi~-l~kAL~l----------~P~n~~a~~-~--~-~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
+.+|++++|.. +...+.+ +|+|+.... . . ...-+.|.+++.++... .|.++.
T Consensus 222 ~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~---~P~hp~ 288 (310)
T 3mv2_B 222 LQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKL---DHEHAF 288 (310)
T ss_dssp HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHT---TCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHh---CCCChH
Confidence 99999999999 5545555 466655321 0 1 01112566666665555 676664
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.94 E-value=1.3e-08 Score=89.11 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH----cCCHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR----SKRIEE 107 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k----lGr~de 107 (479)
.+|+++|+.+|+++.+.++.. +. ||.+|...+.+++|++.|+++... .++.+. +.|+.+|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~--~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGC--RFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHH--HHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHcCCCCCccHHH
Confidence 357888888898888876543 33 888888888888888888887776 333333 235567777 777888
Q ss_pred HHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 011721 108 EIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ----QNDYESAERYYMKALSLE 179 (479)
Q Consensus 108 Aie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~----lGdydeA~~~yrKALeLd 179 (479)
|+..|++|.+. .++.++++||.+|.. .+++++|+.+|++|.+..
T Consensus 80 A~~~~~~Aa~~----------------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGL----------------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC----------------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888777664 123467778888877 778888888888887763
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.91 E-value=4.9e-09 Score=84.15 Aligned_cols=87 Identities=13% Similarity=0.044 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHH
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHAS 229 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeLdPdna~-a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~ 229 (479)
+++|.++...|+|++|+.+|+++++++|+++. ++. +|.+|..+|++++|+. +.+++.++|++..+. ......
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----~~~~~~ 78 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ-----ARKMVM 78 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH-----HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH-----HHHHHH
Confidence 67899999999999999999999999999998 887 9999999999999999 999999999886521 114445
Q ss_pred HHHHHHHhhhhcCCC
Q 011721 230 LMLTELESQSMLQPT 244 (479)
Q Consensus 230 eaL~el~~a~~~~P~ 244 (479)
+++..+.+....+|+
T Consensus 79 ~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 79 DILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHhccCcc
Confidence 555555555555554
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=1.5e-08 Score=81.83 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
..+++++|.++..+|+|++|+.+|++|++++|+++.++. +|.+|..+|++++|+. +.+++.++|++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 72 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE 72 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999999999998877 9999999999999999 999999999873
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.90 E-value=1.6e-08 Score=78.79 Aligned_cols=70 Identities=27% Similarity=0.360 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
....+++++|.+|...|++++|+.+|+++++++|+++..+. +|.+|..+|++++|+. +.+++.++|++..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH
Confidence 35678999999999999999999999999999999998877 9999999999999999 9999999998754
No 197
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.90 E-value=4.6e-08 Score=114.74 Aligned_cols=139 Identities=18% Similarity=0.163 Sum_probs=102.4
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 51 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 51 ~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
+.+.+|+.+|.++...|++++|+..|.++ +++..+.. ++.++.+.|++++|+++|..|.+..+.... ..
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~e--Va~~~~~lGkyEEAIeyL~mArk~~~e~~I----dt 1171 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYME--VVQAANTSGNWEELVKYLQMARKKARESYV----ET 1171 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhcccccc----cH
Confidence 45678899999999999999999999875 44444433 578999999999999999999987644210 00
Q ss_pred HHHHhh---chh--HHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-
Q 011721 131 KIARSQ---GRK--TQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS- 203 (479)
Q Consensus 131 ~~A~~~---g~k--~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~- 203 (479)
..+... ++. ...-+...+...+.++|..|...|+|++|+.+|.+| ..|. ||.+|.++|++++|++
T Consensus 1172 ~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1172 ELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHH
Confidence 111100 000 111122223356678999999999999999999997 3565 9999999999999999
Q ss_pred HHHHH
Q 011721 204 LLQAV 208 (479)
Q Consensus 204 l~kAL 208 (479)
+.+|.
T Consensus 1244 arKA~ 1248 (1630)
T 1xi4_A 1244 ARKAN 1248 (1630)
T ss_pred HHHhC
Confidence 87773
No 198
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.88 E-value=4.6e-10 Score=118.47 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
.++.+.+.. ......+.+++..+++++|+..|.++ ++..++..++..+...|++++|+.+++.+++..++ +
T Consensus 24 ~fae~~~~~-~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~-- 94 (449)
T 1b89_A 24 EFAERCNEP-AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-S-- 94 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-c--
Confidence 344455442 24445667788888888888888664 33457888888888888888888888877765333 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC--------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG--------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ 161 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~--------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~ 161 (479)
.+...|+.+|.++|++++++.+|+. |...++.. .....|...+... ..+..||.+|.+
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~ 160 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 160 (449)
T ss_dssp --------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT---------TCHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHH
Confidence 2344566788888888888777753 22111110 1122332222221 367888889999
Q ss_pred cCCHHHHHHHHHHH
Q 011721 162 QNDYESAERYYMKA 175 (479)
Q Consensus 162 lGdydeA~~~yrKA 175 (479)
+|+|++|+++|++|
T Consensus 161 Lg~yq~AVea~~KA 174 (449)
T 1b89_A 161 LGEYQAAVDGARKA 174 (449)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHc
Confidence 99999999999988
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.84 E-value=4.7e-08 Score=85.51 Aligned_cols=110 Identities=18% Similarity=0.126 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhh
Q 011721 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQ 146 (479)
Q Consensus 67 GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~p 146 (479)
+++++|+..|+++.+.....+. |+.+|...+.+++|+..|++|.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~---------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC------LSLVSNSQINKQKLFQYLSKACEL---------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----------------------------
Confidence 4689999999999988755432 678899999999999999999876
Q ss_pred hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcC
Q 011721 147 ELSRISGNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 147 e~~~al~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P 212 (479)
.++.++++||.+|.. .+++++|+.+|++|.+. +++.++. ||.+|.. .+++++|+. +.+|.....
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 233589999999999 99999999999999987 6787776 9999999 899999999 888887743
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.82 E-value=5.6e-08 Score=101.72 Aligned_cols=118 Identities=9% Similarity=0.004 Sum_probs=92.5
Q ss_pred HHHHHHCCChHHHHHHHHHHHHh-----cCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRCL-----CADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~l-----~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
..-+..+|+|++|++.|++++++ .|+++.. ...+.|+.+|..+|+|++|+.+++++|.++....+. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~--~----- 366 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG--S----- 366 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS--S-----
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC--C-----
Confidence 34466889999999999999875 4566542 334457889999999999999999999996654321 1
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHH---HHH-HHHHHHHc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-----ESDKNK---QCN-LAICLIRL 195 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-----dPdna~---a~n-LG~~L~~l 195 (479)
.|+....+++||.+|..+|+|++|+.+|++|+++ .|+++. .++ |+.++.++
T Consensus 367 -----------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 367 -----------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred -----------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 2444468999999999999999999999999996 788874 345 78777654
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.80 E-value=1.2e-08 Score=81.82 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDRVDS-ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~-Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
+..+..++..|++++|+..|.+++..+|++.. +++.+|.+|...|++++|++.|++++.++|++......
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---------
Confidence 34556788899999999999999999999999 99999999999999999999999999999998754321
Q ss_pred cCCHHHHHHHHHHHHHhchh
Q 011721 102 SKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~ 121 (479)
+.+.+|+..|++++...|.
T Consensus 75 -~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHC
T ss_pred -HHHHHHHHHHHHHhccCcc
Confidence 5567888888888877664
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.79 E-value=4.6e-08 Score=102.74 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=84.2
Q ss_pred HHCCChHHHHHHHHHHHHh-----cCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhc
Q 011721 64 KQLDRSEEAIEAIKSFRCL-----CADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137 (479)
Q Consensus 64 ~~~GrydEAie~lekal~l-----~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g 137 (479)
...|+|++|+..|++++++ .|+++.. ...+.|+.+|..+|+|++|+.+|+++|++.....+.+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~----------- 377 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY----------- 377 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-----------
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-----------
Confidence 3568999999999998875 5666653 3344578999999999999999999999966543311
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHH
Q 011721 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-----ESDKNKQC 186 (479)
Q Consensus 138 ~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-----dPdna~a~ 186 (479)
.|+....++|||.+|..+|+|++|+.+|++|+++ .|+++...
T Consensus 378 -------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 378 -------SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp -------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred -------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 2444568999999999999999999999999996 78887543
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.77 E-value=9e-08 Score=98.82 Aligned_cols=65 Identities=17% Similarity=0.003 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+.++.-+|.++...|++++|+.++++|++++|+ ..++. +|.++...|++++|+. +.+|+.++|..
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 345555666666666666666666666666654 33444 6666666666666666 66666666654
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.71 E-value=2.5e-08 Score=81.73 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
+|++..+++.+|.+|...|++++|+..|++++.++|+++..++ .+|.+|..+|++++|+..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYY--HLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4666667777777777777777777777777777777665433 3456677777777777777777776554
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.71 E-value=3.3e-08 Score=103.76 Aligned_cols=93 Identities=17% Similarity=0.089 Sum_probs=76.7
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-- 178 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-- 178 (479)
..|+|++|+.+|+++|++....++. . .|.....+++||.+|..+|+|++|+.+|+++|++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~--~----------------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 371 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFED--S----------------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCT--T----------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccCh--h----------------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 4689999999999999985543321 1 2344468999999999999999999999999986
Q ss_pred ---CCCCHH---HHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 179 ---ESDKNK---QCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 179 ---dPdna~---a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.|+++. .++ ||.+|..+|++++|+. +.+|+.+.
T Consensus 372 ~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 677774 466 9999999999999999 88887653
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.70 E-value=6.1e-07 Score=92.64 Aligned_cols=81 Identities=6% Similarity=-0.138 Sum_probs=47.9
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH--H-HHHHHHHHHHHHHHHHhhhhcCCCChhhH
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE--S-YAKSFEHASLMLTELESQSMLQPTDYGED 249 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~--~-~~k~~~rA~eaL~el~~a~~~~P~~~~~~ 249 (479)
++.++|.++.++. +|.++...|++++|+. +.+|+.++|+ ..+.. . .....++..++++.+..++.++|.+.-..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 3455677776666 7777766777777777 7777777653 11111 1 11233556666666667777777665555
Q ss_pred HHHHhhh
Q 011721 250 KRKKILS 256 (479)
Q Consensus 250 ~~~~~~~ 256 (479)
..++++.
T Consensus 348 ~~~~l~F 354 (372)
T 3ly7_A 348 WIENGIF 354 (372)
T ss_dssp HHHHSSS
T ss_pred HHhCcee
Confidence 5555554
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.65 E-value=1.2e-06 Score=87.74 Aligned_cols=172 Identities=12% Similarity=-0.026 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHH-----HHHH-HHHhcCCChHHHHHHHHHH-HHHH--cC-
Q 011721 34 DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIE-----AIKS-FRCLCADDSQESLDNVLLE-LYKR--SK- 103 (479)
Q Consensus 34 d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie-----~lek-al~l~P~da~~~l~~aLg~-lY~k--lG- 103 (479)
++.+|..+|.++... .+-.+......+.+++. -+.. +...+|++++..+-.+++. .+.. .|
T Consensus 102 ~~~RA~~Ly~ra~~y---------~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg 172 (301)
T 3u64_A 102 AYSRARKLYLRGARY---------ALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLG 172 (301)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTT
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCC
Confidence 355777777776542 12222223334433333 1223 2334566665544433321 1222 12
Q ss_pred -----CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc-----CCHHHHHHHHH
Q 011721 104 -----RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ-----NDYESAERYYM 173 (479)
Q Consensus 104 -----r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l-----GdydeA~~~yr 173 (479)
...+|...+++|++++|... +..+|..||.+|... |+.++|.++|+
T Consensus 173 ~~Al~~l~~A~a~lerAleLDP~~~------------------------~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 173 SALPDTVHAAVMMLERACDLWPSYQ------------------------EGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCTTHH------------------------HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHhCCCcc------------------------cCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 35778888888888877643 224899999999996 99999999999
Q ss_pred HHHHcCCCC-HHHHH-HHHHHHHc-CCHHHHHH-HHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHhh
Q 011721 174 KALSLESDK-NKQCN-LAICLIRL-NRIAEAKS-LLQAVRASSRN-EKMDESYAKSFEHASLMLTELESQ 238 (479)
Q Consensus 174 KALeLdPdn-a~a~n-LG~~L~~l-Gr~dEAi~-l~kAL~l~P~n-~~a~~~~~k~~~rA~eaL~el~~a 238 (479)
+||+|+|+. .+.+. +|..|... |++++|.. +.+++..+|.. +.........-.+|..+|.++..-
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~~d~ 298 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHVQDF 298 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHhHHh
Confidence 999999975 78777 99999884 99999999 88999988863 332222233446788888776543
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.62 E-value=1.8e-07 Score=77.65 Aligned_cols=72 Identities=14% Similarity=0.010 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 145 VQELSRISGNLAWAYLQQND---YESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGd---ydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|++++++..+|.+++..++ .++|..+|++||+++|+++.+.. ||.+++..|+|++|+. +.+.+..+|.+++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 46778899999999987776 79999999999999999999887 9999999999999999 8888999998544
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.55 E-value=1.4e-07 Score=98.79 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=78.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.-+..+|++++|+..|+++|++....++. -.|....++.+||.+|..+|+|++|+.+|+++|
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~------------------~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPD------------------INIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCT------------------TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCc------------------cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34668999999999999999885443221 123344689999999999999999999999999
Q ss_pred Hc-----CCCCHH---HHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 177 SL-----ESDKNK---QCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 177 eL-----dPdna~---a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
++ .|+++. .++ ||.+|..+|++++|+. +.+|+.+
T Consensus 357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 86 677774 355 9999999999999999 8888765
No 210
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.54 E-value=3e-06 Score=93.72 Aligned_cols=175 Identities=15% Similarity=0.047 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 36 SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAI-EAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 36 eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAi-e~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lek 114 (479)
+.....|+++|...|.++..++..|..+...|+.++|+ ++|++++..+|.+... ...++.++...|+++.|...|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L--wl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL--AFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHH
Confidence 35567888888888888888888888888888888887 8888888888876533 33455778888888888888888
Q ss_pred HHHhc-----------hh----------HHh-cCC---------CchHHHHhhchhHHHhh-hhhHHHHHHHHHHHHHHc
Q 011721 115 KLKKT-----------EE----------VIA-CGG---------KSTKIARSQGRKTQITL-VQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 115 ALkl~-----------p~----------~la-~~~---------k~~~~A~~~g~k~~l~L-~pe~~~al~nLG~ay~~l 162 (479)
++... |. ... ..- .....|+..+..+ +.. .+....+|...|.+....
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A-~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC-RRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHh
Confidence 88752 21 000 000 0111232222222 111 112234666666666665
Q ss_pred C-CHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 163 N-DYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 163 G-dydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+ +++.|...|+++|+..|+++..+. .+..+...|+.+.|.. +.+++...|+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 5 499999999999999999998887 8888899999999999 8999988874
No 211
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.50 E-value=7.9e-08 Score=101.48 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC---------------
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD--------------- 85 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~--------------- 85 (479)
.+...|......|.+++|..+|.++ +.+..||.+|.++|+|++|+++|+++. +|.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF 193 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcH
Confidence 5555666677777888888888765 246677888888888888888777761 220
Q ss_pred ------------ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHH
Q 011721 86 ------------DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISG 153 (479)
Q Consensus 86 ------------da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~ 153 (479)
+++.. ..++.+|.+.|++++|+.+|+++|.+.+...+ ++.
T Consensus 194 ~lA~~~~l~L~~~ad~l--~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~--------------------------~ft 245 (449)
T 1b89_A 194 RLAQMCGLHIVVHADEL--EELINYYQDRGYFEELITMLEAALGLERAHMG--------------------------MFT 245 (449)
T ss_dssp HHHHHTTTTTTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH--------------------------HHH
T ss_pred HHHHHHHHHHHhCHhhH--HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH--------------------------HHH
Confidence 11111 12346788888888888888888887654332 344
Q ss_pred HHHHHHH--HcCCHHHHHHHHHHHHHcCC-----CCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 154 NLAWAYL--QQNDYESAERYYMKALSLES-----DKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 154 nLG~ay~--~lGdydeA~~~yrKALeLdP-----dna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
.||.+|. +.++..++++.|...+.+.| .++..+. +..+|.+-++|+.|+.
T Consensus 246 el~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 246 ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 4444443 23444555555555555544 4444444 5555555555555554
No 212
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.43 E-value=9.3e-06 Score=89.82 Aligned_cols=146 Identities=6% Similarity=-0.080 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhchhHHhcC---------CCchHHHHhhchh
Q 011721 70 EEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEI-ELLKRKLKKTEEVIACG---------GKSTKIARSQGRK 139 (479)
Q Consensus 70 dEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAi-e~lekALkl~p~~la~~---------~k~~~~A~~~g~k 139 (479)
+.....|++++..+|..+..++.. +..+...|+.++|+ ..|++|+...|....+. ......|+..+.+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~y--a~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNM--ANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHH--HHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH--HHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 356678999999999998777654 46678889999997 99999999988643210 1223344443333
Q ss_pred HHHhh-------h---h-----------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHH-HHHHHHHcC
Q 011721 140 TQITL-------V---Q-----------ELSRISGNLAWAYLQQNDYESAERYYMKALSL-ESDKNKQCN-LAICLIRLN 196 (479)
Q Consensus 140 ~~l~L-------~---p-----------e~~~al~nLG~ay~~lGdydeA~~~yrKALeL-dPdna~a~n-LG~~L~~lG 196 (479)
....+ . | ....+|...+....+.|+.+.|...|.+|++. .+.....+. .|.+....|
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 21111 1 2 24457888888888999999999999999998 434445555 666665655
Q ss_pred -CHHHHHH-HHHHHHhcCCCccc
Q 011721 197 -RIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 197 -r~dEAi~-l~kAL~l~P~n~~a 217 (479)
+++.|.. +.+++...|+++..
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~ 506 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEY 506 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHH
Confidence 5999999 89999999988653
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.30 E-value=3.9e-06 Score=69.82 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|..+...|+|..|+..|++|++..+.... .......++.+||.+|.++|++++|+.+++
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-------------------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~ 70 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEI-------------------STIDKVSVLDYLSYAVYQQGDLDKALLLTK 70 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCC-------------------CcccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4667777788888888888888776432110 012344689999999999999999999999
Q ss_pred HHHHcCCCCHHHHH-HH
Q 011721 174 KALSLESDKNKQCN-LA 189 (479)
Q Consensus 174 KALeLdPdna~a~n-LG 189 (479)
+|++++|++..+.+ ++
T Consensus 71 ~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 71 KLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHCTTCHHHHHHHH
T ss_pred HHHhcCCCCHHHHhhHH
Confidence 99999999997755 66
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=6.4e-06 Score=75.03 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+++++||..|+++|+|++|..+++++|+++|+|..+..
T Consensus 72 d~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 58899999999999999999999999999999987765
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.21 E-value=1.1e-05 Score=66.96 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLE-------SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLd-------Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.-.+.||..++.+|+|..|+..|++|+... +..+..+. ||.+|.++|++++|+. +.+++.++|++..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 356899999999999999999999999974 23456676 9999999999999999 8999999999865
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.16 E-value=1.1e-05 Score=73.57 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccch
Q 011721 146 QELSRISGNLAWAYLQQN---DYESAERYYMKALSLE-S-DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMD 218 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lG---dydeA~~~yrKALeLd-P-dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~ 218 (479)
+.+.++.+++|+++.+.+ ++++++..|+.+++.+ | ++.+++. ||..+.++|+|++|+. +.++|+++|+|.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~--- 105 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN--- 105 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH---
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---
Confidence 445579999999999998 7779999999999999 7 4456554 9999999999999999 888999999884
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 011721 219 ESYAKSFEHASLMLTELESQSM 240 (479)
Q Consensus 219 ~~~~k~~~rA~eaL~el~~a~~ 240 (479)
.|..+.+.+++...
T Consensus 106 --------QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 106 --------QAKELERLIDKAMK 119 (152)
T ss_dssp --------HHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHH
Confidence 45555555555543
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.04 E-value=3.8e-05 Score=76.97 Aligned_cols=109 Identities=12% Similarity=0.010 Sum_probs=87.3
Q ss_pred cCCCcHHHHHHHHHHHHH-----CCC------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 011721 48 AGDRVDSALKDMAVVMKQ-----LDR------SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS-----KRIEEEIEL 111 (479)
Q Consensus 48 l~p~~~~Al~~LA~vL~~-----~Gr------ydEAie~lekal~l~P~da~~~l~~aLg~lY~kl-----Gr~deAie~ 111 (479)
.++++..+++-.|.+... .|. ..+|...++++++++|+..+...+..||.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456667777777766533 233 5788888999999999955545556788899995 999999999
Q ss_pred HHHHHHhchhH-HhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCC
Q 011721 112 LKRKLKKTEEV-IACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ-QNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 112 lekALkl~p~~-la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~-lGdydeA~~~yrKALeLdPdn 182 (479)
|++||+++|.. + .+++..|..|.. +|++++|.+++++|+.++|..
T Consensus 227 ferAL~LnP~~~i--------------------------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDP--------------------------DHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCS--------------------------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCc--------------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999998753 3 377888988887 599999999999999998884
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.04 E-value=1.3e-05 Score=66.21 Aligned_cols=51 Identities=18% Similarity=-0.037 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 35 PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
.++|..++++|+..+|++..++..+|.++.+.|+|++|+.++++++..+|.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466666666666666666666666666666666666666666666666655
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.88 E-value=0.00091 Score=71.02 Aligned_cols=155 Identities=12% Similarity=0.034 Sum_probs=115.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCC---------hHHHHHHHHHHHHhc--CCChHHHH
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINA--GDRVDSALKDMAVVMKQLDR---------SEEAIEAIKSFRCLC--ADDSQESL 91 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l--~p~~~~Al~~LA~vL~~~Gr---------ydEAie~lekal~l~--P~da~~~l 91 (479)
.....-..|++++|+.+|.+.... .|+ ..+|..|-.++...+. +++|.++|+++.... |+ ...
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---~~t 107 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---EAT 107 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC---HHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC---HHH
Confidence 345556789999999999998874 454 4456666666665444 788999999887653 44 233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
.+.++..|.+.|++++|+.+|++..... +.| +...|+.|=..|.+.|+.++|.+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g------------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFG------------------------IQP-RLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------CCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------CCC-ccceehHHHHHHHHCCCHHHHHHH
Confidence 4567789999999999999999876531 111 123677788889999999999999
Q ss_pred HHHHHHc--CCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 011721 172 YMKALSL--ESDKNKQCN-LAICLIRLNRIAEAKSLLQAVR 209 (479)
Q Consensus 172 yrKALeL--dPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~ 209 (479)
|++..+. .|+ ...|+ |-.+|.+.|++++|..+++.+.
T Consensus 163 ~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 163 DAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 9998875 444 45677 9999999999999999554443
No 220
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.66 E-value=0.0036 Score=66.12 Aligned_cols=55 Identities=11% Similarity=-0.031 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 35 PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
.+.....|+++|...|..+..+...+..+...|+.++|..+|++++.. |.+....
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~ 249 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH
Confidence 355678999999999999999999999999999999999999999999 9875433
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.37 E-value=0.0022 Score=56.58 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+.++.||..++++|+|++|..+++..|+++|+|..+..
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 58899999999999999999999999999999987765
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.34 E-value=0.0078 Score=63.80 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhchhHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLC--ADDSQESLDNVLLELYKRSKR---------IEEEIELLKRKLKKTEEVI 123 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~--P~da~~~l~~aLg~lY~klGr---------~deAie~lekALkl~p~~l 123 (479)
.+..+-..+.+.|++++|+++|+++.... |+ ....+.|..+|...+. .++|.+.|++.....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G---- 100 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK---- 100 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC----
Confidence 35555677889999999999999988763 44 2223445556655444 677777777655430
Q ss_pred hcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHH-HHHHHHHcCCHHH
Q 011721 124 ACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL--ESDKNKQCN-LAICLIRLNRIAE 200 (479)
Q Consensus 124 a~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL--dPdna~a~n-LG~~L~~lGr~dE 200 (479)
+.| +...|+.|-.+|.+.|++++|+..|++..+. .|+ ...|+ |-..|...|++++
T Consensus 101 --------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 101 --------------------VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp --------------------CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHH
T ss_pred --------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHH
Confidence 112 2237888889999999999999999998875 454 56777 8889999999999
Q ss_pred HHH-HHHHHHh--cCCCccch---H--HHHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 201 AKS-LLQAVRA--SSRNEKMD---E--SYAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 201 Ai~-l~kAL~l--~P~n~~a~---~--~~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
|.. +.+.... .|+..... . .....+++|.++|.++... ...|...
T Consensus 159 A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~ 211 (501)
T 4g26_A 159 AYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKS 211 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHH
Confidence 999 5554432 33321100 0 1124578899999999864 3456533
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.13 E-value=0.0028 Score=55.82 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-CCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 148 LSRISGNLAWAYLQQNDYES---AERYYMKALSLE-SDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdyde---A~~~yrKALeLd-Pdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..++.+++||++....+..+ ++..++..+..+ |... +.+. ||..+.++|+|++|+. +...|..+|+|..
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 44688999999999998888 999999999987 5333 4444 9999999999999999 7778999999854
No 224
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.05 E-value=0.025 Score=59.57 Aligned_cols=165 Identities=10% Similarity=0.012 Sum_probs=104.4
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---cC
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL---CA 84 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l---~P 84 (479)
...++...|................|++++|...|.+|+.. |.....+...+.. .+.++. ++.+... ..
T Consensus 202 ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~----~e~~~~---~~~l~~~~~~~~ 273 (493)
T 2uy1_A 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV----MDEEAV---YGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH----TTCTHH---HHHHHHHTC---
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh----cchhHH---HHHHHHHHHhhc
Confidence 44455566765555555555667789999999999999999 8865433332222 111122 2222211 10
Q ss_pred --------CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 85 --------DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 85 --------~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
......+....+..+.+.|..+.|...|.+| . .|... ..++...|
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~-------------------------~~v~i~~A 326 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVG-------------------------PHVFIYCA 326 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCC-------------------------HHHHHHHH
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCC-------------------------hHHHHHHH
Confidence 0001112222345666788899999999999 3 33210 01333344
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 157 WAYLQQN-DYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 157 ~ay~~lG-dydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
.+....+ +++.|...|+++++.-|+.+..+. .+..+...|+.+.|.. +.++
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444445 699999999999999999987766 7888889999999998 5555
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.67 E-value=0.016 Score=53.36 Aligned_cols=96 Identities=16% Similarity=0.065 Sum_probs=67.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
..+...|.|+.|+-....++.+......... -.....++..+|.+++..|+|..|+.+|++||
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-----------------p~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-----------------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCccccc-----------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4456678888888888877776322111000 00123588999999999999999999999997
Q ss_pred HcC---CCC----------------------HHHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 011721 177 SLE---SDK----------------------NKQCN-LAICLIRLNRIAEAKSLLQAVR 209 (479)
Q Consensus 177 eLd---Pdn----------------------a~a~n-LG~~L~~lGr~dEAi~l~kAL~ 209 (479)
.+. +.+ .+... +|.||+++|++++|+..++.|-
T Consensus 91 q~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 91 QQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 752 111 13444 9999999999999999766653
No 226
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.036 Score=61.97 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=87.8
Q ss_pred HCCC-hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhHHh-cCCCchHHHHhhchhHH
Q 011721 65 QLDR-SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS-KRIEEEIELLKRKLKKTEEVIA-CGGKSTKIARSQGRKTQ 141 (479)
Q Consensus 65 ~~Gr-ydEAie~lekal~l~P~da~~~l~~aLg~lY~kl-Gr~deAie~lekALkl~p~~la-~~~k~~~~A~~~g~k~~ 141 (479)
..++ ++.|+..|+++...+|.... .+..+++.+.... .+--+|+..+.++++-...... ........
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~--------- 329 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS--------- 329 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH---------
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc---------
Confidence 3556 58899999999999997532 1222222222222 2345688888888764322211 11111100
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 011721 142 ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQA 207 (479)
Q Consensus 142 l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kA 207 (479)
..+.+-....+..-+..++..|+|+-|+++-++|+.+.|..-..+. |+.||+.+|+|+.|+-.+..
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 0111223345666688888999999999999999999999998887 99999999999999975444
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.48 E-value=0.022 Score=50.70 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 148 LSRISGNLAWAYLQQNDY---ESAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdy---deA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.+.+.+++||++.+..+- ..++..++..+..+|... +.+. ||..+.++|+|++|+. +...|..+|+|..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 346889999999988765 469999999999999765 4444 9999999999999999 7778999999844
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.46 E-value=0.046 Score=49.84 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=28.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 161 QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
..++.++|...|+.++.+....+..+. .|..-..+|+++.|.. +-+|+...|..
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 335555555555555555444444443 4555555555555555 55555555543
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.44 E-value=0.031 Score=50.24 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 148 LSRISGNLAWAYLQQNDYE---SAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdyd---eA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..++.|++||++....+-+ +++..++..+..+|... +.+. ||..+.++|+|++|.. +...|+.+|+|..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 4468899999999988665 79999999999999776 4444 9999999999999999 7778999999843
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.09 E-value=0.029 Score=51.68 Aligned_cols=93 Identities=14% Similarity=0.005 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhc---CCC---
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAG---DRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLC---ADD--- 86 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~---p~~------~~Al~~LA~vL~~~GrydEAie~lekal~l~---P~d--- 86 (479)
++.-....+..+.|+.|+.+...++... ++. ..++..+|.++..+|+|..|+..|++++... ++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344456778899999999999877642 321 2467889999999999999999999976532 111
Q ss_pred -----------------hHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 87 -----------------SQESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 87 -----------------a~~~l~~aLg~lY~klGr~deAie~lek 114 (479)
.+..+.+-++.||.++|++++|+..++.
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1223445577999999999999998773
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.02 E-value=0.096 Score=47.74 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICLIRLNR 197 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~nLG~~L~~lGr 197 (479)
....+.+|...|..-.++|+.+.|.+.+.+|+.+.|.....+..|..-++.|+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~ 142 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQK 142 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCC
Confidence 44456778888888889999999999999999999987766666655555554
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.90 E-value=0.19 Score=53.97 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=78.0
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 26 KRAQLVEKDPSRAIS-LFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~-~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
....+..+++++|.. ++ ..-++ ...+..+...+...|.+++|++..+ ++... ..+....|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l----~~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~-----f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVL----PNVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK-----FELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTG----GGCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH-----HHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHH----hcCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh-----eehhhhcCC
Confidence 345577899999876 44 11110 1223566777888899888887653 22111 134566788
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS------- 177 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe------- 177 (479)
+++|.+..+. .++...|..||..+.+.|+++.|+.+|.++-.
T Consensus 668 ~~~A~~~~~~-------------------------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l 716 (814)
T 3mkq_A 668 LTLARDLLTD-------------------------------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLL 716 (814)
T ss_dssp HHHHHHHHTT-------------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHh-------------------------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHH
Confidence 8888776431 12234788888889999999999998887521
Q ss_pred -cCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 178 -LESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 178 -LdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
...++..... ++......|+++.|..
T Consensus 717 ~~~~~~~~~~~~~~~~a~~~~~~~~A~~ 744 (814)
T 3mkq_A 717 HSSFNNKEGLVTLAKDAETTGKFNLAFN 744 (814)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCchHHHHH
Confidence 1233443333 5555555555555554
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.79 E-value=0.033 Score=49.54 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+.++.||..++++|+|++|..+.+..|+++|+|..+..
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 58899999999999999999999999999999987765
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.39 E-value=0.23 Score=44.58 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+.++.||..++++|+|++|..+.+..|+++|+|..+..
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 58899999999999999999999999999999987655
No 235
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.35 E-value=0.049 Score=58.10 Aligned_cols=67 Identities=18% Similarity=0.076 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..+..||.+..-...++.|..+|.+|+.+.|++...+| ||.+....|+.-+|+. |.+++........
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~ 221 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh
Confidence 46788999999999999999999999999999999999 9999999999999999 8999876544443
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.24 E-value=0.65 Score=47.34 Aligned_cols=100 Identities=11% Similarity=-0.011 Sum_probs=70.1
Q ss_pred HcCCHHHHHHHHHHHHHhchhHH--hcCC-CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVI--ACGG-KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~l--a~~~-k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
..|+.+.|+..|.+|+.++.... .+.. ....... ..+......++..++.++...|++++|+..+++++.
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r-------~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFA-------TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHH-------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45777778888888887753211 1100 0000000 011122234677888999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
.+|-+...+. |-.+|...|+..+|+. |.+.
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998887 9999999999999999 6553
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.14 E-value=1.4 Score=45.54 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=106.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH-----HHHHHHHHHH-CCChHHHHHHHHHHHHhcCCChHH----HH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSA-----LKDMAVVMKQ-LDRSEEAIEAIKSFRCLCADDSQE----SL 91 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~A-----l~~LA~vL~~-~GrydEAie~lekal~l~P~da~~----~l 91 (479)
....+.++...|++++-..++......-+..+.| ...|-..+.. .+..+.-++.+..+++-.-++-.. .+
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788887777766544322111111 2222222222 344555556666555432222111 13
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
..-|+.+|...|+|.+|+..+.+.++-.... +. ...-.+++..-..+|..+|++.++..+
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd-----------------~~~llev~lle~~~~~~~~n~~k~k~~ 161 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKL---DD-----------------KNLLVEVQLLESKTYHALSNLPKARAA 161 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SC-----------------THHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---cc-----------------chhHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3457899999999999999999888753220 00 001125777888999999999999999
Q ss_pred HHHHHHcC---CCCHH---HH-H-HHHHHH-HcCCHHHHHH-HHHHHHhcC
Q 011721 172 YMKALSLE---SDKNK---QC-N-LAICLI-RLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 172 yrKALeLd---Pdna~---a~-n-LG~~L~-~lGr~dEAi~-l~kAL~l~P 212 (479)
|.+|..+. +-++. .+ . -|.+++ ..++|.+|.. |.+++.-..
T Consensus 162 l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 162 LTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 99998764 23332 22 3 688889 8999999999 889875443
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.92 E-value=0.9 Score=46.26 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=69.9
Q ss_pred HHHcCCHHHHHHHHHHHHHc--CC------Cc--------------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 29 QLVEKDPSRAISLFWAAINA--GD------RV--------------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l--~p------~~--------------~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
....++++.|...+.+|+.+ +| .. ..++..++..+...|++++|+..+..++..+|-+
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~ 204 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR 204 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34568999999999999974 22 10 1234457788899999999999999999999987
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTE 120 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p 120 (479)
-..+ ..|..+|...|+..+|+..|++.-+..-
T Consensus 205 E~~~--~~lm~al~~~Gr~~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 205 EPLW--TQLITAYYLSDRQSDALGAYRRVKTTLA 236 (388)
T ss_dssp HHHH--HHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5433 3455789999999999999998877643
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.62 E-value=3.1 Score=43.22 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
+...|+.+|...|++.+|...+.....--- +... ..+..+++.....+|+..++|..|..
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~------~~~~--------------~~~kve~~l~q~rl~l~~~d~~~a~~ 198 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETY------GSME--------------MSEKIQFILEQMELSILKGDYSQATV 198 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC------SSSC--------------HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH------hccc--------------HHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 344567889999999999998887653200 0000 01223577778889999999999999
Q ss_pred HHHHHHH---cCCCCH----HHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 171 YYMKALS---LESDKN----KQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 171 ~yrKALe---LdPdna----~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
.++++.. -.+.++ ..+. .|.++...++|.+|-. |..++..
T Consensus 199 ~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 199 LSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999743 234443 2344 8999999999999999 7777653
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.59 E-value=0.51 Score=46.58 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=31.3
Q ss_pred HHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 63 MKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 63 L~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
+.+.|.+++|++.+...++.+|.|+... ..|+.++.-.|+++.|...++-+.+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R--~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLR--SSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3445555666666655566666554332 23445555566666666666655555554
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.48 E-value=1.6 Score=46.85 Aligned_cols=106 Identities=14% Similarity=-0.025 Sum_probs=53.0
Q ss_pred HHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhchhHHhcCCCchHHHHhh
Q 011721 63 MKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKL------KKTEEVIACGGKSTKIARSQ 136 (479)
Q Consensus 63 L~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekAL------kl~p~~la~~~k~~~~A~~~ 136 (479)
....|++++|.++.+.+ ++... -..++.++.+.|+++.|+.+|.++- .++..
T Consensus 662 ~l~~~~~~~A~~~~~~~-----~~~~~--W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~--------------- 719 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE-----SAEMK--WRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSS--------------- 719 (814)
T ss_dssp HHHHTCHHHHHHHHTTC-----CCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH---------------
T ss_pred hhhcCCHHHHHHHHHhh-----CcHhH--HHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHH---------------
Confidence 45567777776664321 22221 1235566666777777777666641 11100
Q ss_pred chhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 137 GRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICLIRLNRIAEAKSLLQ 206 (479)
Q Consensus 137 g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~nLG~~L~~lGr~dEAi~l~k 206 (479)
..+.+.+..++.+....|++..|..+|.+. ++. -..-.+|.+.+++++|+.+-+
T Consensus 720 ---------~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~~--~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 720 ---------FNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GDI--QGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TCH--HHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------cCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CCH--HHHHHHHHHcCChHHHHHHHH
Confidence 111123344555555566666666555442 111 112345667777777777444
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.42 E-value=1.3 Score=41.32 Aligned_cols=135 Identities=15% Similarity=0.053 Sum_probs=88.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHH
Q 011721 30 LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEI 109 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAi 109 (479)
+.-.|++.|+-+-.-.. |+.++.-..++.++.-.|.|..|+-++..+ +-....+.- .-||.+..+|..|+
T Consensus 13 ~kY~dYdt~~fLsa~L~---~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk--~LCy~klKdYkkA~ 82 (242)
T 3kae_A 13 IRYRDYETAIFLAACLL---PCKPEYRMLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYE--SLCYKKKKDYKKAI 82 (242)
T ss_dssp HHTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHH--HHHHHHTTCHHHHH
T ss_pred hhcccccHHHHHHHHHc---cCChHHHhhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHH--HHHHHHHHHHHHHH
Confidence 45678988864332222 222344567899999999999998776431 222222222 35899999999999
Q ss_pred HHHHHHHH--hc--hhHHhcCCCchHHHHhhchhHHHhhhhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 110 ELLKRKLK--KT--EEVIACGGKSTKIARSQGRKTQITLVQELSR-ISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 110 e~lekALk--l~--p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~-al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
..++..|+ ++ |+.- +. ....-++|.+.+ .+..+|.++.+.|+-+||+.+|.......|=.+.
T Consensus 83 ~~le~il~~kvd~d~~~d---------~~----~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 83 KSLESILEGKVERDPDVD---------AR----IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHTTCSBCCCCCC---------HH----HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHhcccccCcccc---------cc----cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 99999994 32 2110 00 000123455554 4566799999999999999999999999887665
Q ss_pred HHH
Q 011721 185 QCN 187 (479)
Q Consensus 185 a~n 187 (479)
.-|
T Consensus 150 vEn 152 (242)
T 3kae_A 150 VEN 152 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.78 Score=42.42 Aligned_cols=67 Identities=9% Similarity=-0.055 Sum_probs=48.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
.+.+..|+++.|....+.. +...-+..||.....+|+++-|+.+|.++-.. . .+..+|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----~-----~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF-----D-----KLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----H-----HHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----H-----HHHHHHHHhCCHH
Confidence 4677889999999876553 34667899999999999999999999875221 1 1234577777765
Q ss_pred HH
Q 011721 107 EE 108 (479)
Q Consensus 107 eA 108 (479)
.-
T Consensus 78 ~L 79 (177)
T 3mkq_B 78 KL 79 (177)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.39 E-value=1.4 Score=45.56 Aligned_cols=120 Identities=11% Similarity=0.092 Sum_probs=80.8
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCC--ChHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCAD--DSQES--LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~--da~~~--l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.||.+|...|+|.+|.+.+.+++..... +.... +......+|..+|++.++...|.+|....... ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai---~~------ 174 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI---YC------ 174 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CC------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC---CC------
Confidence 6899999999999999999988875433 22211 22223478999999999999999998773210 00
Q ss_pred HhhchhHHHhhhhh-HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC--CCH---HHHH-HHHHHHHcCC
Q 011721 134 RSQGRKTQITLVQE-LSRISGNLAWAYL-QQNDYESAERYYMKALSLES--DKN---KQCN-LAICLIRLNR 197 (479)
Q Consensus 134 ~~~g~k~~l~L~pe-~~~al~nLG~ay~-~lGdydeA~~~yrKALeLdP--dna---~a~n-LG~~L~~lGr 197 (479)
.|. .+.+...-|.+++ ..++|.+|-.+|-.+++--. +++ .... ++.|-+-.++
T Consensus 175 -----------~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 175 -----------PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 011 0124455688899 89999999999999985321 222 1222 5555555555
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.33 E-value=1.8 Score=48.36 Aligned_cols=130 Identities=12% Similarity=0.033 Sum_probs=82.0
Q ss_pred CCCCcHHHHHHHHHHH--cCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---CCChHHHHHHHHHHHHh-------
Q 011721 16 PAGDSPYVRAKRAQLV--EKD-PSRAISLFWAAINAGDRVDSALKDMAVVMKQ---LDRSEEAIEAIKSFRCL------- 82 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~--~gd-~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~---~GrydEAie~lekal~l------- 82 (479)
|...+-|...+-+.+. .++ ++.|+.+|++....+|... .++..+.+..- ..+--+|+..+.+.++.
T Consensus 243 ~t~v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 243 ATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp CCSSSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 4444555544333322 233 6889999999888888654 33333333222 12334566666655431
Q ss_pred -cCCChHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHH
Q 011721 83 -CADDSQE--------SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISG 153 (479)
Q Consensus 83 -~P~da~~--------~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~ 153 (479)
.+.+... .+....+..+...|+++-|+++-++|+...|. .-..|+
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--------------------------eF~tW~ 375 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD--------------------------SFESWY 375 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--------------------------CHHHHH
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch--------------------------hhHHHH
Confidence 2333211 12222346677899999999999999988554 334999
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 011721 154 NLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 154 nLG~ay~~lGdydeA~~~y 172 (479)
.|+.+|..+|+|+.|+-.+
T Consensus 376 ~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 376 NLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHH
Confidence 9999999999999999643
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.62 E-value=0.37 Score=49.80 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
.++..+|..|.+.|++++|+++|.++...+....+ ..+.+.+..++...+++..+..++.++-.+..... ....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~----d~~~- 206 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG----DWER- 206 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC----CTHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC----CHHH-
Confidence 46778999999999999999999999887655422 22333345788899999999999999877632211 0000
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
...+....|.+++..++|.+|-.+|..++.-..
T Consensus 207 ---------------~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 207 ---------------RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp ---------------HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred ---------------HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 012445568888999999999999999887543
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.32 E-value=12 Score=37.25 Aligned_cols=160 Identities=17% Similarity=0.080 Sum_probs=83.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH-HHH---hcCCChHHHHHHHHHHHHHHcC
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS-FRC---LCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lek-al~---l~P~da~~~l~~aLg~lY~klG 103 (479)
..+.+|++-+|-..|+ .++.-|..+++|++|++++.. ++. .........+...+.++|.+.+
T Consensus 22 ~~I~~G~yYEAhQ~~R--------------tl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~ 87 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLR--------------TIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE 87 (312)
T ss_dssp HHHHHTCHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhccChHHHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 3455566666655553 355567888999999988654 222 2111122233334557777765
Q ss_pred CH--HHHHHHHHHHHHhchhHHhcCCCchH---HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 104 RI--EEEIELLKRKLKKTEEVIACGGKSTK---IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 104 r~--deAie~lekALkl~p~~la~~~k~~~---~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
-. ++.+.-+.+.+...|... +.... .|+.--.+. -...--+++.+..+|..|...|++.+|+.+|-..
T Consensus 88 ~~~~~~~~~rl~~l~~~~p~~~---~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~--- 160 (312)
T 2wpv_A 88 VKVDDISVARLVRLIAELDPSE---PNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG--- 160 (312)
T ss_dssp CCCSHHHHHHHHHHHTTCCTTC---TTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---
T ss_pred CCCCHHHHHHHHHHHHHCCCCC---chHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---
Confidence 44 334444444444433210 00000 111100000 0001135679999999999999999999998622
Q ss_pred CCCCHHHH-H-HHHHHHHc--CCHHHHHH-HHHHH
Q 011721 179 ESDKNKQC-N-LAICLIRL--NRIAEAKS-LLQAV 208 (479)
Q Consensus 179 dPdna~a~-n-LG~~L~~l--Gr~dEAi~-l~kAL 208 (479)
+.+++..+ . |-..+... |...|+-- +.+++
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaV 195 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLV 195 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 11234433 2 55555444 66666555 55654
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.30 E-value=9.5 Score=35.66 Aligned_cols=89 Identities=18% Similarity=0.114 Sum_probs=68.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH--h--cC-------------CChHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC--L--CA-------------DDSQE 89 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~--l--~P-------------~da~~ 89 (479)
.+..-.|.+.+++.++. .-+...+.+--+.+|....+|..|+..++.++. . +| .+- .
T Consensus 41 I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~Dk-E 114 (242)
T 3kae_A 41 IVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDE-E 114 (242)
T ss_dssp HHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCH-H
T ss_pred hhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchH-H
Confidence 34556788888877652 234566777788999999999999999999982 2 22 232 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
.+.+.++.++...|..+|||.+|.....+++-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 45566789999999999999999999998763
No 249
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.61 E-value=1.2 Score=47.52 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..||++..-.+.++.|..+|.+|+.+.|... ..++.||.+....|+.-+|+-+|
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G--------------------------~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNG--------------------------QPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--------------------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCC--------------------------chHHHHHHHHhcccccHHHHHHH
Confidence 3478888889999999999999999977643 38899999999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHH
Q 011721 173 MKALSLESDKNKQCN-LAICLIR 194 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~ 194 (479)
.++|....-.+.+.. |...+..
T Consensus 210 ~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 210 CRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChhHHHHHHHHHHH
Confidence 999998777777665 8777754
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.88 E-value=3.3 Score=40.78 Aligned_cols=59 Identities=20% Similarity=0.103 Sum_probs=54.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
..+..+++++|+......|+.+|.+......|..+|.-.|+++.|.+.++.+.+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 35678999999999999999999999999999999999999999999999999999975
No 251
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.39 E-value=0.51 Score=50.58 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=61.8
Q ss_pred HHcCCHHHHHHHHHHHHH---c--------CCCcHHHHHHHHHHHHHCCChHHHHH----------HHHHHHH----hcC
Q 011721 30 LVEKDPSRAISLFWAAIN---A--------GDRVDSALKDMAVVMKQLDRSEEAIE----------AIKSFRC----LCA 84 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~---l--------~p~~~~Al~~LA~vL~~~GrydEAie----------~lekal~----l~P 84 (479)
+..+++++|..+-...+. + +.=.+..|+-.+.++...|+..+... .+..++. ...
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 455788888877665541 1 11123345555666666777665421 2222221 122
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
.+.++.+.+.+...|...+.|+.|..+..++. .|.... . +.+...+++.+|.++.-+++
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~---s----------------n~q~~rY~YY~GRI~a~q~~ 285 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDV---S----------------SSLEARYFFYLSKINAIQLD 285 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTS---C----------------HHHHHHHHHHHHHHHHHTTC
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccC---C----------------HHHHHHHHHHHHHHHHHhcc
Confidence 34566777778899999999999999999874 332211 0 11223588999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 011721 165 YESAERYYMKALSLESDK 182 (479)
Q Consensus 165 ydeA~~~yrKALeLdPdn 182 (479)
|.+|.+++..|+...|.+
T Consensus 286 Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 286 YSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 999999999999988865
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.31 E-value=3.3 Score=48.04 Aligned_cols=60 Identities=12% Similarity=-0.033 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHH-----hcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRC-----LCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~-----l~P~da~~~l~~aLg~lY~klGr~deAie~lekALk 117 (479)
.|..|-..|.+.|+.++|.++|..+.. ..|+ ....+.|+..|.+.|+.++|.+.|++...
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455666677777777777777755432 2343 22344556667777777777777776654
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.55 E-value=1.3 Score=45.76 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..+|..|.+.|++++|++.|.++...... .....+++..+-.++...+++..|..++
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----------------------~~~kid~~l~~irl~l~~~d~~~~~~~~ 191 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAIS-----------------------TGAKIDVMLTIARLGFFYNDQLYVKEKL 191 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----------------------CCSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----------------------hHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34678999999999999999998764211 0112247777888899999999999999
Q ss_pred HHHHHcCC--CCHH---HH-H-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 173 MKALSLES--DKNK---QC-N-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 173 rKALeLdP--dna~---a~-n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.||..+-. .+.. .+ . .|.+++..++|.+|.. |..++...
T Consensus 192 ~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 192 EAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 99987622 2222 12 2 6888889999999999 77776544
No 254
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.91 E-value=13 Score=34.14 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=27.6
Q ss_pred HHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 63 MKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKL 116 (479)
Q Consensus 63 L~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekAL 116 (479)
..+.|+++.|.++.+.+ ++.. .-.-||+.....|+++-|+.+|.++-
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~--~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSI--TWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHH--HHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHH--HHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34667777777765543 2211 12235666677777777777777543
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=86.77 E-value=5.7 Score=46.12 Aligned_cols=93 Identities=9% Similarity=-0.067 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--cCCChHHHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAIN-----AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--CADDSQESLDNV 94 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~-----l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--~P~da~~~l~~a 94 (479)
|-.....+...|+.++|..+|..... ..|+ ..+|+.|-..|.+.|++++|.++|+++... .|+ ...++.
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD---vvTYnt 205 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD---LLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc---HHHHHH
Confidence 33445567788999999999966432 3555 457899999999999999999999998765 454 233455
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHh
Q 011721 95 LLELYKRSKRI-EEEIELLKRKLKK 118 (479)
Q Consensus 95 Lg~lY~klGr~-deAie~lekALkl 118 (479)
++..+.+.|+. ++|..+|++....
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 67788999984 7889999988764
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.17 E-value=24 Score=35.65 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=67.5
Q ss_pred HHHHcCCH---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH-HHH---hcCCChHHHHHHHHHHHHH
Q 011721 28 AQLVEKDP---SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS-FRC---LCADDSQESLDNVLLELYK 100 (479)
Q Consensus 28 ~~L~~gd~---eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lek-al~---l~P~da~~~l~~aLg~lY~ 100 (479)
..+..|+| -+|-..|+ .++.-|..+++|++|++++.. ++. ..-......+...+.++|.
T Consensus 21 ~~I~~G~y~~~YEAHQ~~R--------------Ti~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~ 86 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQETR--------------LVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFR 86 (336)
T ss_dssp HHHHHCCHHHHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCccccHHHHHHH--------------HHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHH
Confidence 34556776 55555443 345558889999999997644 222 2111122333344557777
Q ss_pred HcCCH--HHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 101 RSKRI--EEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 101 klGr~--deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
+.+-. ++.+.-+.+.+...|....-...--..|+.--.+. -...--+++.+..+|.+|.+.|+|.+|+.+|-
T Consensus 87 ~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 87 QAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 76532 33333344444433321000000000111100000 00012356799999999999999999999993
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.70 E-value=6.2 Score=40.89 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=71.7
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHh-c-CCChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 57 KDMAVVMKQLDRSEEAIEAIKSFRCL-C-ADDSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 57 ~~LA~vL~~~GrydEAie~lekal~l-~-P~da~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..|+.+|...|++.+|...+..+..- . ..+.. ..+.+....+|...+++..|...++++....-.. ....
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~----~~~~-- 214 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN----PKYE-- 214 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS----SCCH--
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc----CCcH--
Confidence 56899999999999999999886532 2 12211 1223334588999999999999999875421100 0000
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.-...++...|.++...++|.+|-.+|..++..
T Consensus 215 -------------~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 -------------SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp -------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 001246778899999999999999999999864
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.40 E-value=8.1 Score=44.74 Aligned_cols=139 Identities=11% Similarity=0.037 Sum_probs=87.8
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhc
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g 137 (479)
.+...+...+.++-|.+ ++...|.++... +.+|.+|...|++++|..+|++|-.-........ ..........
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~--yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAV--YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-AVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHH--HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-SSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHH--HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-hhhccccccc
Confidence 45556777788876654 456678776543 5578899999999999999998743210000000 0000000000
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH----HHH-HHHHHHHcCCHHHHHHHH
Q 011721 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES-DKNK----QCN-LAICLIRLNRIAEAKSLL 205 (479)
Q Consensus 138 ~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP-dna~----a~n-LG~~L~~lGr~dEAi~l~ 205 (479)
.. .....-.+.+|..+..++.+.|.++.+++.-+.||+..+ ++.. .+. +=..++.+|+|++|...+
T Consensus 890 ~~--~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 890 EK--YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HT--TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred cc--ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 00 000011235778888899999999999999999999764 4432 234 777889999999998833
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.67 E-value=5.5 Score=42.69 Aligned_cols=143 Identities=14% Similarity=0.112 Sum_probs=60.2
Q ss_pred HHHHHCCChHHHHHHHHHHHH---hc---CCC---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 61 VVMKQLDRSEEAIEAIKSFRC---LC---ADD---SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 61 ~vL~~~GrydEAie~lekal~---l~---P~d---a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
..+...+++++|.++-..++. +. -.. ..+.+.+.+..+|...|+..+..........+.+..+...
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~----- 218 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFL----- 218 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHH-----
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHH-----
Confidence 346788999999987765541 11 110 0111112223456667777665555444444443332110
Q ss_pred HHHhhchhHHHhhhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HH---HHH-HHHHHHHcCCHHHHH
Q 011721 132 IARSQGRKTQITLVQE-LSRISGNLAWAYLQQNDYESAERYYMKALSLESDK----NK---QCN-LAICLIRLNRIAEAK 202 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe-~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn----a~---a~n-LG~~L~~lGr~dEAi 202 (479)
+.+.+..+.+ .+.+++.|=..|+..+.|++|..+..|+. .|.+ .. .+. +|.++.-+++|.+|.
T Consensus 219 ------rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~ 290 (523)
T 4b4t_S 219 ------KIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTAN 290 (523)
T ss_dssp ------HHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------HHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 0000001111 12466777889999999999999999996 4432 22 223 999999999999999
Q ss_pred H-HHHHHHhcCCCcc
Q 011721 203 S-LLQAVRASSRNEK 216 (479)
Q Consensus 203 ~-l~kAL~l~P~n~~ 216 (479)
. +..|+...|.+..
T Consensus 291 ~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 291 EYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHTSSCSCSSS
T ss_pred HHHHHHHHhCCcchh
Confidence 9 8899998887643
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.16 E-value=30 Score=39.99 Aligned_cols=120 Identities=12% Similarity=0.016 Sum_probs=76.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hcCC--------------------Ch
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC-LCAD--------------------DS 87 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~-l~P~--------------------da 87 (479)
.+..+.++-|..+ +..-+.++...+.+|.++...|++++|..+|+++-. +... +.
T Consensus 822 l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 897 (1139)
T 4fhn_B 822 LFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNL 897 (1139)
T ss_dssp HHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCS
T ss_pred HHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccccc
Confidence 3445555544432 233455555668899999999999999999987521 1111 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhh-HHHHHHHHHHHHHHcCCHH
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQE-LSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe-~~~al~nLG~ay~~lGdyd 166 (479)
...++.-+..++.+.|.++.+++.-+.||...+.. +++ ....|.++=..++.+|+|+
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~----------------------~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETD----------------------DEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC----------------------CHHHHHHHHHHHHHHHHHHCCSG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC----------------------ChhhHHHHHHHHHHHHHhhCCHH
Confidence 11233334567888888998888888888752210 001 1136677777788999999
Q ss_pred HHHHHHHH
Q 011721 167 SAERYYMK 174 (479)
Q Consensus 167 eA~~~yrK 174 (479)
+|...+..
T Consensus 956 ~Ay~aL~~ 963 (1139)
T 4fhn_B 956 AAHVALMV 963 (1139)
T ss_dssp GGGHHHHH
T ss_pred HHHHHHHh
Confidence 99877643
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=76.87 E-value=30 Score=39.75 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHH----HHcCCHHHHHHHHHHHHHcCCC------cH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 18 GDSPYVRAKRAQ----LVEKDPSRAISLFWAAINAGDR------VD----SALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 18 ~~~pyv~a~~~~----L~~gd~eeAi~~y~kAL~l~p~------~~----~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
+..+|++++-++ +..|..++++.++...+..+.. .. .|-..||.++...++ +++++.+..++..+
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd 484 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND 484 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC
Confidence 456788776442 2334445677777777753320 11 344567776665554 56667776666543
Q ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 84 ADDSQESLDNVLLELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 84 P~da~~~l~~aLg~lY~klGr~deAie~lekALk 117 (479)
.........++||.+|.-.|+-+-...++..+..
T Consensus 485 ~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 485 SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence 2211122334566677777776555555554443
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=67.10 E-value=16 Score=41.87 Aligned_cols=178 Identities=12% Similarity=0.027 Sum_probs=81.9
Q ss_pred cCCHHHHHHHHHHHHHc---CCCc--HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC------ChHH--HHHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINA---GDRV--DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD------DSQE--SLDNVLLEL 98 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l---~p~~--~~Al~~LA~vL~~~GrydEAie~lekal~l~P~------da~~--~l~~aLg~l 98 (479)
.++.++++.++.+.+.. +..+ ..|++.||.++...+ +++++.+...+..... +... ...++||.+
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 46666777766665541 1112 345666666666555 4788777776654330 1111 122345555
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHH--------h--cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHH
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVI--------A--CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESA 168 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~l--------a--~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA 168 (479)
|.-.|+ +++++.+...|.-..... + +.|.....+.........+-..++..-..-+|..+...|+.+.+
T Consensus 465 ~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 465 AMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp STTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred hcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 555554 456666766665322110 0 11111111111000000011112222223344555566777666
Q ss_pred HHHHHHHHHcCCCCHH--HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 169 ERYYMKALSLESDKNK--QCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 169 ~~~yrKALeLdPdna~--a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
....+........... +.. +|.+|...|+ .+|++ ++..+..+++
T Consensus 544 ~~li~~L~~~~dp~vRygaa~alglAyaGTGn-~~aIq~LL~~~~~d~~ 591 (963)
T 4ady_A 544 DDLITKMLASDESLLRYGGAFTIALAYAGTGN-NSAVKRLLHVAVSDSN 591 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHhccCCc
Confidence 6665554443211111 122 6777777777 45555 6665555544
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.80 E-value=65 Score=34.94 Aligned_cols=121 Identities=12% Similarity=-0.000 Sum_probs=68.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CcHHH---HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 28 AQLVEKDPSRAISLFWAAINAGD-RVDSA---LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p-~~~~A---l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
..+..+|++.|...+.+...... ..... ...+|.-+...+...++...+.+......++. . ... .+..-.+.|
T Consensus 223 ~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~e~-~~r~Alr~~ 299 (618)
T 1qsa_A 223 ASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-L-IER-RVRMALGTG 299 (618)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-H-HHH-HHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-H-HHH-HHHHHHHCC
Confidence 34556688888887766543221 11111 12233334444545667766666544333221 1 111 122234568
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
+++.|...|.+.-.- ........+-+|.++..+|+.++|..+|+++..
T Consensus 300 d~~~a~~~~~~l~~~--------------------------~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPME--------------------------AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTT--------------------------GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcccc--------------------------ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888877543221 011234678888888999999999999988875
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.56 E-value=77 Score=34.35 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQAVR 209 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~ 209 (479)
-...++++ ..|+++.|..+|.+.-.-....+.... +|.++..+|+.++|..+.+.+.
T Consensus 289 e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 289 ERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34556655 569999999999776553334556667 9999999999999999444333
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.62 E-value=72 Score=29.85 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 66 LDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 66 ~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
.+...++.++|.-+....-....+.+....+..+...|++.+|.++|+.++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34477999999888776655444566666788999999999999999999986
No 266
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=58.46 E-value=14 Score=30.78 Aligned_cols=28 Identities=25% Similarity=0.133 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
-.+...+..+...|+|++||+++++|..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3667788999999999999999998863
No 267
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.53 E-value=90 Score=35.39 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=72.1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH-HHHhh
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK-IARSQ 136 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~-~A~~~ 136 (479)
.+...+...|.++-|.+ ++...|.++.. .+.+|.+|...|++++|..+|++|-.- +........ .-...
T Consensus 815 ~l~~~L~~~~~~~~a~e----L~~~~~~t~~~--~yv~gr~~L~~ge~~~A~~~F~kAA~g----l~~~~~~~~~~~~~~ 884 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQ----LIGWLNSDPIA--VYLKALIYLKSKEAVKAVRCFKTTSLV----LYSHTSQFAVLREFQ 884 (950)
T ss_dssp HHHHHHHHTTCHHHHHH----HGGGCCSSHHH--HHHHHHHHHHTTCHHHHHHHHHTCCCT----TCSSCCSCGGGHHHH
T ss_pred HHHHHHHHhcHHHHHHH----HHhhcCCChHH--HHHHHHHHHHcCCHHHHHHHHHHHhhh----cccCcccccchhhhh
Confidence 46677788888876544 55678887654 356789999999999999999986421 000000000 00000
Q ss_pred chhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCH
Q 011721 137 GRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-ESDKN 183 (479)
Q Consensus 137 g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-dPdna 183 (479)
+.....+...-...+|.....++.+.+-|+-++...+.||.. .+++.
T Consensus 885 ~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 885 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred hccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 000000111112357888899999999999999999999974 45554
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=50.28 E-value=59 Score=25.59 Aligned_cols=30 Identities=7% Similarity=0.238 Sum_probs=25.4
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
.+|..+...|++++|+.+|-+|+..+|.-.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 478888889999999999999999988753
No 269
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=48.66 E-value=48 Score=34.66 Aligned_cols=98 Identities=12% Similarity=-0.047 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHHHhcCCC-------h-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-HHhcCCCchHH
Q 011721 68 RSEEAIEAIKSFRCLCADD-------S-------QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE-VIACGGKSTKI 132 (479)
Q Consensus 68 rydEAie~lekal~l~P~d-------a-------~~~l~~aLg~lY~klGr~deAie~lekALkl~p~-~la~~~k~~~~ 132 (479)
..++|...+.++...+-.| . ...+.+.|..+|.++|+...+...++..-....- .....+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p----- 215 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQ----- 215 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSC-----
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCC-----
Confidence 4566666777777664221 0 1233344568999999999998887533221100 000000
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-ESDK 182 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-dPdn 182 (479)
..+-..+++.+|.+++.+++|.+|.+++..|+.. -|..
T Consensus 216 ------------~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 216 ------------LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ------------ccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 1123458899999999999999999999999999 7754
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=47.92 E-value=98 Score=30.68 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=61.8
Q ss_pred HHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH----HHHhhch
Q 011721 63 MKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK----IARSQGR 138 (479)
Q Consensus 63 L~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~----~A~~~g~ 138 (479)
-...|+|=||-+.|+.+. .=|.++++|++|++.+.......-+. +... .+...-.
T Consensus 23 ~I~~G~yYEAhQ~~Rtl~----------------~Ry~~~~~~~eAidlL~~ga~~ll~~-----~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRTIA----------------NRYVRSKSYEHAIELISQGALSFLKA-----KQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHHHHH----------------HHHHHhcCHHHHHHHHHHHHHHHHHC-----CCcchHHHHHHHHHH
Confidence 355688888888887532 23667788888888755444331110 0111 1110000
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHc-------CCCCHHHHH-HHHHHHHcCCHHHHHH-HH
Q 011721 139 KTQITLVQELSRISGNLAWAYLQQNDYE-SAERYYMKALSL-------ESDKNKQCN-LAICLIRLNRIAEAKS-LL 205 (479)
Q Consensus 139 k~~l~L~pe~~~al~nLG~ay~~lGdyd-eA~~~yrKALeL-------dPdna~a~n-LG~~L~~lGr~dEAi~-l~ 205 (479)
.....-.+-+......|..++.....-+ +=..+..+|+.- .-.++..+. +|..|.+.|++.+|.. +.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 0000000111234445555544432211 123444444432 224667676 9999999999999999 54
No 271
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=46.65 E-value=27 Score=27.93 Aligned_cols=27 Identities=22% Similarity=0.057 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
-+...|.-+-..|+|++|+.+|..|++
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345667778888999999988877763
No 272
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=46.64 E-value=38 Score=31.30 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-----HH-HHHHHHHcCCHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ-----CN-LAICLIRLNRIA 199 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a-----~n-LG~~L~~lGr~d 199 (479)
.+++.+|.+++.+++|.+|.+++..|+..-|..... +. |--+-+-+|++.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 588999999999999999999999999998876422 22 444445567654
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=44.25 E-value=1.9e+02 Score=28.95 Aligned_cols=23 Identities=4% Similarity=0.083 Sum_probs=19.9
Q ss_pred CCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 181 DKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 181 dna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
.++.... +|.+|.+.+++.+|..
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHH
Confidence 4566666 9999999999999988
No 274
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.78 E-value=32 Score=27.37 Aligned_cols=25 Identities=32% Similarity=0.297 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
+...|.-+-..|+|++|+.+|..|+
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3555666778888888888777665
No 275
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.53 E-value=88 Score=28.16 Aligned_cols=62 Identities=6% Similarity=-0.093 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhcCCC--h----HHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 57 KDMAVVMKQLDRSEEAIEAIKSFRCLCADD--S----QESLD-NVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 57 ~~LA~vL~~~GrydEAie~lekal~l~P~d--a----~~~l~-~aLg~lY~klGr~deAie~lekALkl 118 (479)
+.-|..+...|+|=+|-++++.+-...+.. . +..+. .+.+....+.|+..-|..++.+|+..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345677888899999999999988776654 1 12233 33345567789999999999999885
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=43.44 E-value=24 Score=28.21 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=7.9
Q ss_pred cCCHHHHHHHHHHHHHh
Q 011721 102 SKRIEEEIELLKRKLKK 118 (479)
Q Consensus 102 lGr~deAie~lekALkl 118 (479)
.|++++|+.+|.++++.
T Consensus 32 ~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 32 EGNAEEAITNYKKAIEV 48 (83)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH
Confidence 34444444444444443
No 277
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.03 E-value=47 Score=26.15 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
..+|..+...|++++|..+|-+|+.+-|+-.+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 567888888888888888888888887776543
No 278
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=42.79 E-value=30 Score=27.53 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=10.1
Q ss_pred HcCCHHHHHHHHHHHHHhc
Q 011721 101 RSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 101 klGr~deAie~lekALkl~ 119 (479)
+.|+|++|+.+|.++++..
T Consensus 23 ~~g~y~eAl~lY~~aie~l 41 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIEVL 41 (83)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 3455555555555555543
No 279
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=42.35 E-value=34 Score=27.55 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
.+...|.-+...|+|++|+.+|..|++
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345557777888899999888887764
No 280
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.07 E-value=25 Score=30.20 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
.+..+...+++|..+..+||+++.. |+-++|+++|++
T Consensus 11 ~l~~ik~~h~~AF~~Is~AL~~DE~---------------g~k~~Al~lYk~---------------------------- 47 (116)
T 2dl1_A 11 EIKIIREAYKKAFLFVNKGLNTDEL---------------GQKEEAKNYYKQ---------------------------- 47 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------TCHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc---------------CCHHHHHHHHHH----------------------------
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
+|..|+++|.+........+...+.|+..-.+ ..-+|++|..+++..+.
T Consensus 48 -GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~K-----------M~~nL~~v~~RL~~Le~ 96 (116)
T 2dl1_A 48 -GIGHLLRGISISSKESEHTGPGWESARQMQQK-----------MKETLQNVRTRLEILEK 96 (116)
T ss_dssp -HHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhccccccCCCCCChhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHh
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=41.66 E-value=1.8e+02 Score=29.06 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=26.5
Q ss_pred HHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhh
Q 011721 192 LIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQ 238 (479)
Q Consensus 192 L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a 238 (479)
.++.++|.-|.. ..+-|++.|.. ...++|.+++..-++.
T Consensus 217 a~K~KNy~tAa~fArrLLel~p~~--------~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 217 HFKHKNFLQASYFAGEFLKIISSG--------PRAEQARKIKNKADSM 256 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSS--------HHHHHHHHHHHHHHTS
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHhcC
Confidence 356788888888 66667777742 2446777777776643
No 282
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.24 E-value=2.3e+02 Score=31.99 Aligned_cols=89 Identities=10% Similarity=-0.015 Sum_probs=57.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhcCC-------------------
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR-CLCAD------------------- 85 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal-~l~P~------------------- 85 (479)
....+..+.++-|.. .+..-|.++..-+-+|.+|...|++++|..+|+++- .+...
T Consensus 817 ~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~ 892 (950)
T 4gq2_M 817 VEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 892 (950)
T ss_dssp HHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTT
T ss_pred HHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccc
Confidence 334455666665433 334555666667889999999999999999998743 22111
Q ss_pred -ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 86 -DSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 86 -da~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
.....++.-.+.++.+.|-++-++..-+.||..
T Consensus 893 ~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 893 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 111123333457777888888888887777765
No 283
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=40.99 E-value=2.6e+02 Score=27.06 Aligned_cols=45 Identities=24% Similarity=0.213 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHH----cCCCCHH----HHHHHHHHHH-cCCHHHHHH-HHHHHHh
Q 011721 166 ESAERYYMKALS----LESDKNK----QCNLAICLIR-LNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 166 deA~~~yrKALe----LdPdna~----a~nLG~~L~~-lGr~dEAi~-l~kAL~l 210 (479)
+.|...|++|++ +.|.+|. ++|.+..|.+ +++.++|.. ..+|+..
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678889999986 5777774 3456666666 799999999 7777653
No 284
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.35 E-value=2.5e+02 Score=28.23 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=66.7
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhc----C-----------CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRCLC----A-----------DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA 124 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~l~----P-----------~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la 124 (479)
..+..+..+.++|++.++++.... . ..+...+...++.+|...|+.++|..+++++-........
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 345677889999999988753221 0 1233444455678899999999999999988765322111
Q ss_pred cCCCchHHHHhhchhHHHhhhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 125 CGGKSTKIARSQGRKTQITLVQE-LSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 125 ~~~k~~~~A~~~g~k~~l~L~pe-~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
. .+. ...+|...|..|...++|.++..++-.++.
T Consensus 163 ~-------------------~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 I-------------------PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp S-------------------SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-------------------cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 0 111 123566678888899999998888887776
No 285
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.08 E-value=42 Score=26.54 Aligned_cols=27 Identities=22% Similarity=0.129 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
.+...|.-.-..|+|++|+.+|..|++
T Consensus 15 ~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 15 ELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566667788888888888877764
No 286
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=38.31 E-value=34 Score=28.41 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=15.3
Q ss_pred HHHHHHHHHCCChHHHHHHHHHH
Q 011721 57 KDMAVVMKQLDRSEEAIEAIKSF 79 (479)
Q Consensus 57 ~~LA~vL~~~GrydEAie~leka 79 (479)
-..+..+...|+|++||++.+++
T Consensus 19 ~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHH
Confidence 34566677777777777776654
No 287
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=37.07 E-value=2.8e+02 Score=26.32 Aligned_cols=44 Identities=20% Similarity=0.146 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHH-----cCCCCHHH----HHHHHHHHH-cCCHHHHHH-HHHHHH
Q 011721 166 ESAERYYMKALS-----LESDKNKQ----CNLAICLIR-LNRIAEAKS-LLQAVR 209 (479)
Q Consensus 166 deA~~~yrKALe-----LdPdna~a----~nLG~~L~~-lGr~dEAi~-l~kAL~ 209 (479)
+.|..+|++|++ +.|.+|.. +|.+..|.+ +|+.++|.. ..+|+.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578889998885 57888843 456666666 799999999 666664
No 288
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=36.80 E-value=46 Score=27.01 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
-+...|.-+-..|+|++|+.+|..|++
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345667777888888888888877653
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.00 E-value=1.9e+02 Score=27.42 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 69 SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 69 ydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
.+++.++|.-+....-....+.++...+.+|...|++.+|.++|+.++..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 46788888877766555444556666778999999999999999999986
No 290
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.77 E-value=43 Score=28.53 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
+...|.-+-..|+|++|+.+|..|+
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3455566667788888888777665
No 291
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=34.18 E-value=1.8e+02 Score=26.19 Aligned_cols=79 Identities=9% Similarity=-0.041 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHH-HHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMA-VVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA-~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
++...-+..|.+. +-.. -|.++| .++..+|+-|+=.+.+..++.-++-++.. ...++.+|.+.|+..+|-+.
T Consensus 75 ~NlKrVi~C~~~~---n~~s--e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~--l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 75 QNLKSVVECGVIN---NTLN--EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASI--LVAIANALRRVGDERDATTL 147 (172)
T ss_dssp SCTHHHHHHHHHT---TCCC--HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHH--HHHHHHHHHHTTCHHHHHHH
T ss_pred hcHHHHHHHHHHh---cchH--HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHH--HHHHHHHHHHhcchhhHHHH
Confidence 5677777777542 2222 255566 45678999999888888876655544543 34567889999999999999
Q ss_pred HHHHHHh
Q 011721 112 LKRKLKK 118 (479)
Q Consensus 112 lekALkl 118 (479)
+.+|-+-
T Consensus 148 l~~AC~k 154 (172)
T 1wy6_A 148 LIEACKK 154 (172)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999875
No 292
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=34.12 E-value=48 Score=26.90 Aligned_cols=17 Identities=6% Similarity=0.194 Sum_probs=8.1
Q ss_pred cCCHHHHHHHHHHHHHh
Q 011721 102 SKRIEEEIELLKRKLKK 118 (479)
Q Consensus 102 lGr~deAie~lekALkl 118 (479)
.|+|++|+.+|..+++.
T Consensus 28 ~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 28 ESRYQQALVCYQEGIDM 44 (93)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 34444444444444444
No 293
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=33.89 E-value=2.3e+02 Score=26.36 Aligned_cols=67 Identities=9% Similarity=0.001 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHHc--CC-HHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 19 DSPYVRAKRAQLVE--KD-PSRAISLFWAAIN--AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 19 ~~pyv~a~~~~L~~--gd-~eeAi~~y~kAL~--l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
|.=|++....+... .+ ...+...|.-... ++-..+.-|...|..|...|++.+|.++|+..+...-.
T Consensus 76 D~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 76 DPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 55566654433332 33 5677777766554 78888888899999999999999999999999887643
No 294
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=33.47 E-value=55 Score=27.83 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=11.0
Q ss_pred cCCHHHHHHHHHHHHHhc
Q 011721 102 SKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 102 lGr~deAie~lekALkl~ 119 (479)
.|+|++|+.+|..|+++.
T Consensus 31 ag~y~eAl~lY~~Aie~l 48 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQYF 48 (117)
T ss_dssp HTCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 466666666666666653
No 295
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=32.13 E-value=34 Score=27.32 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
..+|.=|...|+|+.|+.+|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 56777888999999999999998753
No 296
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=31.96 E-value=3.1e+02 Score=28.25 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcC-----CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc-CCCccchH--HHHHHHHHHHHHHHHHHh
Q 011721 168 AERYYMKALSLE-----SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS-SRNEKMDE--SYAKSFEHASLMLTELES 237 (479)
Q Consensus 168 A~~~yrKALeLd-----Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~-P~n~~a~~--~~~k~~~rA~eaL~el~~ 237 (479)
++..|.+|+... -.+.-.|. +|-+|.+.+++.||+. .-.|-..- .-|-...| .+..-++=|.+++..+-+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAneliP~~~k 355 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDLIPNILK 355 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHH
Confidence 778888888753 33344566 9999999999999999 65553322 22222222 344556667777776665
No 297
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=30.90 E-value=89 Score=25.82 Aligned_cols=29 Identities=7% Similarity=0.244 Sum_probs=24.7
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+|..|...|+++.|+.+|-+|+..+|.-
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 47888888999999999998888888863
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.51 E-value=2.9e+02 Score=24.51 Aligned_cols=109 Identities=10% Similarity=0.090 Sum_probs=63.8
Q ss_pred hHHHHHHHhhCCCCCcHHHH-HHHHHHHc-----CCHHHHHHHHHHHHHc---CC---CcHHHHHHHHHHHHHCCChHHH
Q 011721 5 DEELFHVIHKVPAGDSPYVR-AKRAQLVE-----KDPSRAISLFWAAINA---GD---RVDSALKDMAVVMKQLDRSEEA 72 (479)
Q Consensus 5 ~~~~~~~v~k~p~~~~pyv~-a~~~~L~~-----gd~eeAi~~y~kAL~l---~p---~~~~Al~~LA~vL~~~GrydEA 72 (479)
+..++..++.- +|+.|.-- .-.+...+ |. ..-..++++++.. ++ +++ =+..+=..|. ...+++
T Consensus 10 ~~~fE~~i~~y-~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~-RyLklWl~ya--~~~~dp 84 (152)
T 4a1g_A 10 LQMLEAHMQSY-KGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDP-RFISYCLKFA--EYNSDL 84 (152)
T ss_dssp HHHHHHHTTSC-CSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCH-HHHHHHHHHH--TTBSCH
T ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCH-HHHHHHHHHH--HhcCCH
Confidence 44566667665 67776532 12222222 22 2244566666652 11 122 1222323333 234558
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 73 IEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 73 ie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
.++|.-+....-....+.+....+..+...|++.+|.++|+.++..
T Consensus 85 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 85 HQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8888877665544434555666778999999999999999999986
No 299
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=30.39 E-value=62 Score=25.49 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=8.0
Q ss_pred cCCHHHHHHHHHHHHHh
Q 011721 102 SKRIEEEIELLKRKLKK 118 (479)
Q Consensus 102 lGr~deAie~lekALkl 118 (479)
.|++++|+.+|..+++.
T Consensus 26 ~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 26 ATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 34444444444444444
No 300
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=30.06 E-value=3.4e+02 Score=28.51 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcC-----CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHh-cCCCccchH--HHHHHHHHHHHHHHHHH
Q 011721 167 SAERYYMKALSLE-----SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRA-SSRNEKMDE--SYAKSFEHASLMLTELE 236 (479)
Q Consensus 167 eA~~~yrKALeLd-----Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l-~P~n~~a~~--~~~k~~~rA~eaL~el~ 236 (479)
.++..|.+|+... -.+.-.|. +|-+|.+.+++.||+. .-.|-.. ..-|-..+| .+..-++=|.+++..+-
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAneliP~~~ 376 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLL 376 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhHHH
Confidence 3667777777652 23334466 9999999999999999 5555332 222222222 45555666777777655
Q ss_pred h
Q 011721 237 S 237 (479)
Q Consensus 237 ~ 237 (479)
+
T Consensus 377 k 377 (550)
T 3u84_A 377 K 377 (550)
T ss_dssp H
T ss_pred H
Confidence 4
No 301
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.09 E-value=4.8e+02 Score=26.02 Aligned_cols=89 Identities=9% Similarity=-0.074 Sum_probs=60.0
Q ss_pred HHcCCHHHHHHHHHHHHHcC-----------------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---cCC-C--
Q 011721 30 LVEKDPSRAISLFWAAINAG-----------------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL---CAD-D-- 86 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~-----------------p~~~~Al~~LA~vL~~~GrydEAie~lekal~l---~P~-d-- 86 (479)
-...|+++|+.++.+....- .........++..|...|+.++|...++++... ..+ +
T Consensus 87 ~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~ 166 (393)
T 4b4t_O 87 KDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLR 166 (393)
T ss_dssp HHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSH
T ss_pred hhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHH
Confidence 34578999999887653210 011233456788899999999999999887543 111 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
....+..+.+..|...+++..+...+-..+..
T Consensus 167 v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 167 ITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 23455555678888999998887777766654
No 302
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.42 E-value=80 Score=32.98 Aligned_cols=64 Identities=9% Similarity=0.134 Sum_probs=50.5
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-chh
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCA--------DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK-TEE 121 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P--------~da~~~l~~aLg~lY~klGr~deAie~lekALkl-~p~ 121 (479)
.|-.+|.+.|+..-+...++.+-...+ ..-...+.+.+|.++.-.++|.+|.++|..|++. .|.
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 455779999999999999976644432 2223456677899999999999999999999998 764
No 303
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.57 E-value=1e+02 Score=33.57 Aligned_cols=51 Identities=20% Similarity=0.066 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAE 200 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dE 200 (479)
+.....|...+..|+|.-|.+....++..+|+|..+.. ++.+|.++|.-.+
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 35667788889999999999999999999999999988 8999988874433
No 304
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=25.49 E-value=65 Score=26.67 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
..+|..+...|+++.|+.+|-+|+.+-|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 44566666666666666666666665554
No 305
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=23.62 E-value=20 Score=23.94 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=16.1
Q ss_pred chhhhhcccCCCCcccccCCCcc
Q 011721 273 VPRKCRKFYYPKTPCERSNGATV 295 (479)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~ 295 (479)
..+.||-||+| ||..+|+|-
T Consensus 6 egescnvqfyp---ccpglgltc 25 (37)
T 3q8j_A 6 EGESCNVQFYP---CCPGLGLTC 25 (37)
T ss_dssp TTSEEETTTBC---BCTTSCEEE
T ss_pred cCcccceEEec---CCCCCCcEe
Confidence 34679999986 888899875
No 306
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=23.34 E-value=4.1e+02 Score=23.90 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=28.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 158 AYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 158 ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
++..+|+-++-.+.+...+.-++-++..+. ||.+|.+.|+..+|-. +.+|..
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344566666666666555444444455544 6666666666666666 445543
No 307
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=23.20 E-value=2e+02 Score=23.21 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=41.1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
..|..+...|+|=+|=+.++.+-...|+... ..+..+.+....+.|+. |...+.+++..
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 3567788889999999999998888764211 12222223444478888 99999999875
No 308
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=22.94 E-value=4.9e+02 Score=24.68 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHH-----cCCCCHHH----HHHHHHHHH-cCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 011721 165 YESAERYYMKALS-----LESDKNKQ----CNLAICLIR-LNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLT 233 (479)
Q Consensus 165 ydeA~~~yrKALe-----LdPdna~a----~nLG~~L~~-lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~ 233 (479)
-+.|...|++|++ +.|.||.. +|.+..|.+ +++.++|.. ..+|+...-... +...-.+|..+..+++
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~el--d~l~eesykDstlImq 226 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADL--HTLSEDSYKDSTLIMQ 226 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHG--GGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh--hccChhhhHHHHHHHH
Confidence 4678889998876 57889843 456666654 599999999 666654221000 0000134566666666
Q ss_pred HHHhh
Q 011721 234 ELESQ 238 (479)
Q Consensus 234 el~~a 238 (479)
-++.-
T Consensus 227 LLRDN 231 (236)
T 3iqu_A 227 LLRDN 231 (236)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 309
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.53 E-value=1e+02 Score=24.59 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=15.7
Q ss_pred HHcCCHHHHHHHHHHHHHhchhH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEV 122 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~ 122 (479)
...|+|++|+.+|..+++..-..
T Consensus 27 D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777764443
No 310
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.61 E-value=5.4e+02 Score=24.62 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHH-----cCCCCHHH----HHHHHHHHH-cCCHHHHHH-HHHHHH
Q 011721 165 YESAERYYMKALS-----LESDKNKQ----CNLAICLIR-LNRIAEAKS-LLQAVR 209 (479)
Q Consensus 165 ydeA~~~yrKALe-----LdPdna~a----~nLG~~L~~-lGr~dEAi~-l~kAL~ 209 (479)
-+.|...|++|++ +.|.+|.. +|.+..|.+ +++.++|.. ..+|+.
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678889998876 57888843 456666665 699999999 666654
No 311
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=21.13 E-value=1.9e+02 Score=26.47 Aligned_cols=33 Identities=12% Similarity=-0.151 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
.++-+|.++..+++|.+|.+.|..|+..+|...
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 456789999999999999999999999988764
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.01 E-value=3.2e+02 Score=25.80 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=39.1
Q ss_pred HHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 37 RAISLFWAAIN--AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 37 eAi~~y~kAL~--l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
.+...|.-... ++-..+.-|...|.+|-..|++.+|.++|+..+...-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44455555443 77788888889999999999999999999999887644
No 313
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.91 E-value=1.1e+03 Score=28.04 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l 91 (479)
+++..+-.-.+..=+.+++.++|+++++.+|++...++
T Consensus 1108 e~~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~ 1145 (1354)
T 3lxu_X 1108 ESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANL 1145 (1354)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHCCccHHHHH
Confidence 44444444444444578899999999999999865543
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.78 E-value=1.5e+02 Score=26.60 Aligned_cols=86 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
..++-..+.-..+.+..++.+-.=..-|-+.+.-.+..+++.++|.-+....-....+.+....+.+|...|++.+|.++
T Consensus 39 ~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~I 118 (164)
T 2wvi_A 39 ESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAI 118 (164)
T ss_dssp -CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Q ss_pred HHHHHH
Q 011721 112 LKRKLK 117 (479)
Q Consensus 112 lekALk 117 (479)
|+.++.
T Consensus 119 y~~Gi~ 124 (164)
T 2wvi_A 119 FQEGIQ 124 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 315
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=20.72 E-value=1.6e+02 Score=29.99 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
.++..||.+|+-+|+|++|+.+.++++.
T Consensus 191 aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 191 AARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 4778889999999999999999888885
Done!