BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011724
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 154/487 (31%), Positives = 243/487 (49%), Gaps = 43/487 (8%)
Query: 4 NHKKPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDD 63
N KPH + I YP+QGH+ P LA L GF ITFVNT H ++ K++
Sbjct: 3 NFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRG------ 56
Query: 64 IFAGARKAGLDIRYATVSDGL-PLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLN-- 120
A D + ++ DGL P+ D ++ D C V + L +LN
Sbjct: 57 --PKAFDGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQ-SVRKNFLKPYCELLTRLNHS 113
Query: 121 ---PEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLLRSHGHFASTDN 177
P + CLV+D ++ A+++ L N+ +++ A L H G D
Sbjct: 114 TNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDE 173
Query: 178 R-------EDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNT 230
E +D+IPG++ KD++ +++ T+ + ++ + + V + IL NT
Sbjct: 174 SYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNT 233
Query: 231 VHELESETISALHQKQPT-YAIGPI------FPAGFTKSLVPTSLWSE-SECTQWLNTKP 282
+ELES+ I+AL P+ Y IGP+ P + ++LW E +EC WL +K
Sbjct: 234 FNELESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKE 293
Query: 283 RGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIK 342
GSV+YV+FGS + ++E A GL + SF+W++RPD+V F E +
Sbjct: 294 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIF---SSEFTNE 350
Query: 343 ISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKL- 401
I+ RGLI WC Q V++H +IGGFLTHCGWNS ESI VP+LC+P DQ T+ +
Sbjct: 351 IADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFI 410
Query: 402 ---------VKSSITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNF 452
+ +++ +EE+++ IN +++G ++++ E++KK E G S N
Sbjct: 411 CNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNL 470
Query: 453 NQFINDV 459
N+ I DV
Sbjct: 471 NKVIKDV 477
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 181 bits (458), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 120/465 (25%), Positives = 224/465 (48%), Gaps = 37/465 (7%)
Query: 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGA- 68
PH + +P H P + + +LA++ H++ + +QSN IF +
Sbjct: 8 PHVAVLAFPFSTHAAPLLAVVRRLAAA-------APHAVFSFFSTSQSNAS---IFHDSM 57
Query: 69 RKAGLDIRYATVSDGLPLNFDRSLNHDQFMECLLHVFSAHVDE-LVGNLIQLNPEMNCLV 127
+I+ +SDG+P + + + +E + +V + + ++CLV
Sbjct: 58 HTMQCNIKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLV 117
Query: 128 TDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLLRSHGHFASTDNREDTI-DYIP 186
D F +++ +A + + + FWT L+ + ++D +R + RED + ++IP
Sbjct: 118 ADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIP 177
Query: 187 GVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQKQ 246
G+ + +DL + + +++ R++ + + + + + N+ EL+ + L K
Sbjct: 178 GMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKL 237
Query: 247 PTYA-IGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEI 305
TY IGP F P + + + C QWL + SV+Y+SFG+ ++V +
Sbjct: 238 KTYLNIGP-----FNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVAL 292
Query: 306 ALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIG 365
+ L S V F+W LR LP GF EK + G G++VPW Q +V++H A+G
Sbjct: 293 SEALEASRVPFIWSLR-----DKARVHLPEGFLEKTR--GYGMVVPWAPQAEVLAHEAVG 345
Query: 366 GFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKSSI-----------TKEEVSEK 414
F+THCGWNS+ ES+ VPL+C P DQ N ++V+ + TK +
Sbjct: 346 AFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSC 405
Query: 415 INRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDV 459
++++S + +LR+N++ +R+ + A+ GSS +NF ++ V
Sbjct: 406 FDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 147/477 (30%), Positives = 217/477 (45%), Gaps = 55/477 (11%)
Query: 10 PHAIAICYPLQGHVIPFVNLALKLAS-SGFTITFVNTHSIHHQITKAQSNGDEDDIFAGA 68
PH I P GH+IP V A +L G T+TFV +KAQ D + +
Sbjct: 7 PHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAG--EGPPSKAQRT-VLDSLPSSI 63
Query: 69 RKAGLD-IRYATVSDGLPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLV 127
L + +S + SL + L VF + V+ G L LV
Sbjct: 64 SSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEG--GRL------PTALV 115
Query: 128 TDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLLRSHGHFASTDNREDTID-YIP 186
D F + +A ++++ F+ A VL+ + H+ L S + RE T +P
Sbjct: 116 VDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKL---DETVSCEFRELTEPLMLP 172
Query: 187 GVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQ-- 244
G + KD + A D ++ + + K + IL NT ELE I AL +
Sbjct: 173 GCVPVAGKDFLD--PAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPG 230
Query: 245 --KQPTYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDI 302
K P Y +GP+ G ++ ESEC +WL+ +P GSVLYVSFGS + +
Sbjct: 231 LDKPPVYPVGPLVNIGKQEA----KQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQL 286
Query: 303 VEIALGLLLSEVSFVWVLR-PDIVS----------SDETDFLPVGFEEKIKISGRGLIVP 351
E+ALGL SE F+WV+R P ++ +D FLP GF E+ K RG ++P
Sbjct: 287 NELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK--KRGFVIP 344
Query: 352 -WCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKSSI---- 406
W Q V++H + GGFLTHCGWNS ES+ +PL+ +PL +Q N L+ I
Sbjct: 345 FWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAAL 404
Query: 407 ----------TKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFN 453
+EEV+ + LM G+ +R +KE+++ L DG+S K +
Sbjct: 405 RPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALS 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/472 (25%), Positives = 210/472 (44%), Gaps = 57/472 (12%)
Query: 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARK 70
H + +P H P ++L K+A+ +T + + D +F+ + +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVT----------FSFFCTTTTNDTLFSRSNE 64
Query: 71 AGLDIRYATVSDGLPLNFDRSLNHDQ----FMECLLHVFSAHVDELVGNLIQLNPEMNCL 126
+I+Y V DGLP + S N + F++ + F +DE V + + CL
Sbjct: 65 FLPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVA---ETGKNITCL 121
Query: 127 VTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLLRSHGHFASTDNRE----DTI 182
VTD FF + + +A++ + + WT L + + DL+R T ++E +I
Sbjct: 122 VTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIRE-----KTGSKEVHDVKSI 176
Query: 183 DYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCN---TVHEL-ESET 238
D +PG ++ DL + D ++ K ++ R + + N T+H L E+E
Sbjct: 177 DVLPGFPELKASDLPEGV-IKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENEL 235
Query: 239 ISALHQKQPTYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHAS 298
S + +GP F + + E C +WL+ SV+Y+SFGS
Sbjct: 236 NSKF---KLLLNVGP-----FNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPP 287
Query: 299 KNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDV 358
+++ +A L F+W R D + LP GF E+ K G+ IV W Q+++
Sbjct: 288 PHELTALAESLEECGFPFIWSFR-----GDPKEKLPKGFLERTKTKGK--IVAWAPQVEI 340
Query: 359 ISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS-----------SIT 407
+ HS++G FLTH GWNS+ E I VP++ P DQ N L +S +T
Sbjct: 341 LKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLT 400
Query: 408 KEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDV 459
KE + + + MS + +R+ I ++++ A+ +G+S +F I V
Sbjct: 401 KESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIV 452
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 184/389 (47%), Gaps = 48/389 (12%)
Query: 97 FMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALV 156
F+E L+ A + ++ N ++ LV D F V + ++ + + F T
Sbjct: 95 FLESLIPHVKATIKTILSN------KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGF 148
Query: 157 LTLYYHMDLLRSHGHFASTDNREDTIDYIPGV-RAIERKDLMSYLQATDTSTVVHRIIQK 215
L+L + + F +D R+ + IPG+ + L D + + + +
Sbjct: 149 LSLMLSLKNRQIEEVFDDSD-RDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAE 207
Query: 216 AFEDVKRVDFILCNTVHELESETISALHQKQ----PTYAIGPIFPAGFTKSLVPTSLWSE 271
F D K I+ NT +LE +I AL+ P YA+GP+ P +
Sbjct: 208 RFRDTKG---IIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQ----PNPKLDQ 260
Query: 272 SE---CTQWLNTKPRGSVLYVSFGSYAHA-SKNDIVEIALGLLLSEVSFVWVLRPDIVSS 327
++ +WL+ +P SV+++ FGS + + I EIALGL S V F+W +S
Sbjct: 261 AQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS------NS 314
Query: 328 DETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLL 387
E P GF E +++ G+G+I W Q++V++H AIGGF++HCGWNSI ES+W VP+L
Sbjct: 315 AEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPIL 374
Query: 388 CFPLLTDQFTNR-KLVKS----------------SITKEEVSEKINRLMSGKSSDELRKN 430
+P+ +Q N +LVK + EE+ + + LM S + K
Sbjct: 375 TWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSI--VHKK 432
Query: 431 IKEVRKKLENALSADGSSQKNFNQFINDV 459
++E+++ NA+ GSS + + I+D+
Sbjct: 433 VQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 184/389 (47%), Gaps = 48/389 (12%)
Query: 97 FMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALV 156
F+E L+ A + ++ N ++ LV D F V + ++ + + F T
Sbjct: 95 FLESLIPHVKATIKTILSN------KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGF 148
Query: 157 LTLYYHMDLLRSHGHFASTDNREDTIDYIPGV-RAIERKDLMSYLQATDTSTVVHRIIQK 215
L+L + + F +D R+ + IPG+ + L D + + + +
Sbjct: 149 LSLMLSLKNRQIEEVFDDSD-RDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAE 207
Query: 216 AFEDVKRVDFILCNTVHELESETISALHQKQ----PTYAIGPIFPAGFTKSLVPTSLWSE 271
F D K I+ NT +LE +I AL+ P YA+GP+ P +
Sbjct: 208 RFRDTKG---IIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQ----PNPKLDQ 260
Query: 272 SE---CTQWLNTKPRGSVLYVSFGSYAHA-SKNDIVEIALGLLLSEVSFVWVLRPDIVSS 327
++ +WL+ +P SV+++ FGS + + I EIALGL S V F+W +S
Sbjct: 261 AQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS------NS 314
Query: 328 DETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLL 387
E P GF E +++ G+G+I W Q++V++H AIGGF++HCGWNSI ES+W VP+L
Sbjct: 315 AEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPIL 374
Query: 388 CFPLLTDQFTNR-KLVKS----------------SITKEEVSEKINRLMSGKSSDELRKN 430
+P+ +Q N +LVK + EE+ + + LM S + K
Sbjct: 375 TWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSI--VHKK 432
Query: 431 IKEVRKKLENALSADGSSQKNFNQFINDV 459
++E+++ NA+ GSS + + I+D+
Sbjct: 433 VQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 352 WCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTN 398
W Q D++ H F+TH G N I E+I+ +P + PL DQ N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 15/97 (15%)
Query: 352 WCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTN----------RKL 401
W Q+D+++ ++ F+TH G S E++ +VP++ P + +Q N R +
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHI 369
Query: 402 VKSSITKEEVSEKINRLMSGKSSDELRKNIKEVRKKL 438
+ +T E++ E + ++ S + + + VR+++
Sbjct: 370 PRDQVTAEKLREAV---LAVASDPGVAERLAAVRQEI 403
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/104 (19%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 352 WCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKL-----VKSSI 406
W Q+ ++ + + F+TH G QE + + P++ P DQF N + V +
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKL 347
Query: 407 TKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQK 450
EE + + R + D+ + ++++ ++ +G +++
Sbjct: 348 ATEEATADLLRETALALVDD--PEVARRLRRIQAEMAQEGGTRR 389
>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
Pneumoniae
Length = 547
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 165 LLRSHGHFASTDNREDTIDYIPG--VRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKR 222
+L S+GHFA D ED D+ G R R+ + + + T V R+ + + V++
Sbjct: 22 ILESNGHFAMVDTGED-YDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELS---VQK 77
Query: 223 VDFILCNTVHELESETISALHQKQPTYAIGPIFPAGFTKSLVPTS--LW 269
+DFIL H S+ I + + TY + ++ ++ S + S LW
Sbjct: 78 LDFILVTHTH---SDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLW 123
>pdb|1WRA|A Chain A, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
pdb|1WRA|B Chain B, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
Length = 308
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 165 LLRSHGHFASTDNREDTIDYIPG--VRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKR 222
+L S+GHFA D ED D+ G R R+ + + + T V R+ + + V++
Sbjct: 21 ILESNGHFAMVDTGED-YDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELS---VQK 76
Query: 223 VDFILCNTVHELESETISALHQKQPTYAIGPIFPAGFTKSLVPTS--LW 269
+DFIL H S+ I + + TY + ++ ++ S + S LW
Sbjct: 77 LDFILVTHTH---SDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLW 122
>pdb|2QGQ|A Chain A, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
Northeast Structural Genomics Consortium Target Vr77
pdb|2QGQ|B Chain B, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
Northeast Structural Genomics Consortium Target Vr77
pdb|2QGQ|C Chain C, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
Northeast Structural Genomics Consortium Target Vr77
pdb|2QGQ|D Chain D, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
Northeast Structural Genomics Consortium Target Vr77
pdb|2QGQ|E Chain E, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
Northeast Structural Genomics Consortium Target Vr77
pdb|2QGQ|F Chain F, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
Northeast Structural Genomics Consortium Target Vr77
pdb|2QGQ|G Chain G, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
Northeast Structural Genomics Consortium Target Vr77
pdb|2QGQ|H Chain H, Crystal Structure Of Tm_1862 From Thermotoga Maritima.
Northeast Structural Genomics Consortium Target Vr77
Length = 304
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 356 IDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKSSITK------E 409
ID+ A+ L NS+ W V L LT++ + L + K +
Sbjct: 65 IDLYRKQALPDLLRRL--NSLNGEFWIRVXYLHPDHLTEEIISAXLELDKVVKYFDVPVQ 122
Query: 410 EVSEKINRLMS-GKSSDELRKNIKEVRKKLENA-------LSADGSSQKNF---NQFIND 458
S+KI +L KSS+EL+K + +R++ +A + G ++++F QF+ +
Sbjct: 123 HGSDKILKLXGRTKSSEELKKXLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEE 182
Query: 459 VQF 461
+QF
Sbjct: 183 IQF 185
>pdb|2LHK|A Chain A, Structural Analysis Of A Chaperone In Type Iii Secretion
System
pdb|2LHK|B Chain B, Structural Analysis Of A Chaperone In Type Iii Secretion
System
Length = 107
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 400 KLVKSSITKEEVSEKINRLMSGKSSDELRK----NIKEVRKKLENALSADGSSQKNFNQ 454
+L + + T + +EK+N+L+ G + E RK + ++ K +E A SQ NQ
Sbjct: 40 ELSEKAKTDPQAAEKLNKLIEGYTYGEERKLYDSALSKIEKLIETLSPARSKSQSTMNQ 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,172,643
Number of Sequences: 62578
Number of extensions: 570648
Number of successful extensions: 1372
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1334
Number of HSP's gapped (non-prelim): 29
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)