Query 011724
Match_columns 478
No_of_seqs 124 out of 1416
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 2E-62 4.3E-67 497.0 46.7 429 7-461 5-450 (451)
2 PLN02562 UDP-glycosyltransfera 100.0 5E-62 1.1E-66 495.4 46.8 423 10-460 7-448 (448)
3 PLN02173 UDP-glucosyl transfer 100.0 3.7E-62 8E-67 492.8 44.7 419 7-461 3-448 (449)
4 PLN02555 limonoid glucosyltran 100.0 1.2E-61 2.6E-66 493.0 47.8 450 1-462 1-470 (480)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 6.8E-61 1.5E-65 489.1 45.8 444 1-463 1-473 (477)
6 PLN02448 UDP-glycosyltransfera 100.0 3.6E-60 7.8E-65 485.3 45.5 426 6-462 7-458 (459)
7 PLN02207 UDP-glycosyltransfera 100.0 7.5E-60 1.6E-64 477.8 45.1 434 9-463 3-467 (468)
8 PLN02210 UDP-glucosyl transfer 100.0 1.1E-59 2.4E-64 478.7 45.7 424 6-461 5-455 (456)
9 PLN02152 indole-3-acetate beta 100.0 9.4E-60 2E-64 476.1 43.2 421 10-459 4-454 (455)
10 PLN02992 coniferyl-alcohol glu 100.0 5.6E-59 1.2E-63 472.2 45.8 420 10-461 6-469 (481)
11 PLN02554 UDP-glycosyltransfera 100.0 4.4E-59 9.6E-64 478.9 43.6 436 9-462 2-479 (481)
12 PLN03015 UDP-glucosyl transfer 100.0 2.4E-58 5.3E-63 464.9 45.1 427 9-459 3-466 (470)
13 PLN00164 glucosyltransferase; 100.0 3.9E-58 8.4E-63 470.3 45.2 430 9-463 3-475 (480)
14 PLN02670 transferase, transfer 100.0 3.2E-58 7E-63 466.3 43.9 432 9-463 6-467 (472)
15 PLN02534 UDP-glycosyltransfera 100.0 5.4E-58 1.2E-62 466.8 44.4 432 8-461 7-486 (491)
16 PLN03007 UDP-glucosyltransfera 100.0 3.4E-58 7.5E-63 473.0 43.2 436 7-462 3-481 (482)
17 PLN02208 glycosyltransferase f 100.0 1.3E-57 2.8E-62 460.7 42.2 407 1-461 1-439 (442)
18 PLN02167 UDP-glycosyltransfera 100.0 1.8E-57 3.9E-62 466.3 43.9 433 8-461 2-472 (475)
19 PLN02764 glycosyltransferase f 100.0 3.3E-57 7.2E-62 455.4 44.4 414 7-463 3-447 (453)
20 PLN03004 UDP-glycosyltransfera 100.0 2.2E-57 4.8E-62 458.3 41.8 420 9-450 3-450 (451)
21 PLN00414 glycosyltransferase f 100.0 5.5E-56 1.2E-60 449.4 42.9 407 8-463 3-442 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.2E-45 2.6E-50 380.7 35.0 392 10-463 21-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.1E-47 4.6E-52 399.2 13.7 400 11-477 2-468 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.6E-40 3.5E-45 336.7 33.9 363 16-459 2-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 7E-41 1.5E-45 340.5 29.8 367 10-458 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 6.9E-39 1.5E-43 322.0 24.5 381 9-463 1-402 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 8.6E-38 1.9E-42 326.6 26.1 400 9-461 5-455 (496)
28 PRK12446 undecaprenyldiphospho 99.9 1.7E-23 3.7E-28 207.7 27.6 309 9-433 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 2.1E-22 4.6E-27 198.3 26.0 297 10-418 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 2.1E-20 4.6E-25 184.1 25.2 281 11-404 1-290 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.8 1.2E-18 2.7E-23 171.2 26.9 312 10-440 1-337 (357)
32 PRK00726 murG undecaprenyldiph 99.8 7.8E-17 1.7E-21 161.3 29.2 315 9-438 1-338 (357)
33 cd03785 GT1_MurG MurG is an N- 99.7 1.9E-15 4.2E-20 150.7 26.6 310 11-433 1-333 (350)
34 TIGR03590 PseG pseudaminic aci 99.7 2.7E-15 5.8E-20 144.3 23.2 105 285-401 171-278 (279)
35 COG4671 Predicted glycosyl tra 99.7 3.1E-15 6.7E-20 140.6 22.3 325 6-420 6-364 (400)
36 TIGR01133 murG undecaprenyldip 99.7 6.3E-14 1.4E-18 139.7 28.4 306 10-431 1-328 (348)
37 TIGR00215 lpxB lipid-A-disacch 99.6 2.8E-14 6.2E-19 143.7 23.8 343 10-457 6-384 (385)
38 PRK13609 diacylglycerol glucos 99.6 7E-13 1.5E-17 133.9 30.6 136 282-431 200-345 (380)
39 PRK00025 lpxB lipid-A-disaccha 99.5 6.2E-12 1.3E-16 127.0 27.1 339 9-459 1-375 (380)
40 PRK13608 diacylglycerol glucos 99.4 2.6E-11 5.6E-16 122.8 23.8 161 282-460 200-370 (391)
41 TIGR03492 conserved hypothetic 99.4 9.3E-11 2E-15 118.4 26.7 325 18-432 5-372 (396)
42 PF04101 Glyco_tran_28_C: Glyc 99.4 4.8E-14 1.1E-18 125.3 0.4 129 286-427 1-147 (167)
43 PLN02605 monogalactosyldiacylg 99.4 2.4E-10 5.3E-15 115.4 26.7 153 272-440 194-361 (382)
44 PF03033 Glyco_transf_28: Glyc 99.3 3E-12 6.6E-17 110.0 7.5 123 12-154 1-132 (139)
45 cd03814 GT1_like_2 This family 99.3 2.4E-08 5.2E-13 99.2 32.4 149 285-458 197-362 (364)
46 COG3980 spsG Spore coat polysa 99.2 9.4E-09 2E-13 94.5 21.5 139 286-439 160-308 (318)
47 cd03818 GT1_ExpC_like This fam 99.1 2.5E-07 5.4E-12 94.0 32.9 79 344-429 280-371 (396)
48 cd03823 GT1_ExpE7_like This fa 99.1 1.6E-07 3.4E-12 93.0 29.9 129 284-430 190-335 (359)
49 PLN02871 UDP-sulfoquinovose:DA 99.1 2.5E-07 5.3E-12 96.1 31.2 128 286-430 264-406 (465)
50 cd03800 GT1_Sucrose_synthase T 99.1 2.3E-07 5.1E-12 93.8 30.4 77 343-428 281-372 (398)
51 cd04962 GT1_like_5 This family 99.1 3E-07 6.5E-12 92.2 30.3 106 343-460 251-369 (371)
52 cd03794 GT1_wbuB_like This fam 99.1 1.2E-07 2.5E-12 94.7 27.1 341 11-432 1-373 (394)
53 cd03817 GT1_UGDG_like This fam 99.1 3.7E-07 8E-12 90.7 30.0 124 285-420 202-342 (374)
54 cd03808 GT1_cap1E_like This fa 99.0 1.1E-06 2.4E-11 86.5 31.2 316 11-431 1-336 (359)
55 PRK10307 putative glycosyl tra 99.0 4.6E-06 1E-10 85.2 35.9 112 345-462 284-408 (412)
56 cd03816 GT1_ALG1_like This fam 99.0 1.9E-06 4.2E-11 88.1 32.1 120 8-151 2-129 (415)
57 TIGR00236 wecB UDP-N-acetylglu 99.0 4E-08 8.8E-13 98.7 19.2 135 284-433 197-343 (365)
58 TIGR03449 mycothiol_MshA UDP-N 98.9 3.6E-06 7.8E-11 85.7 32.3 80 343-431 281-375 (405)
59 cd03820 GT1_amsD_like This fam 98.9 1E-06 2.2E-11 86.3 27.4 91 343-438 233-333 (348)
60 cd03801 GT1_YqgM_like This fam 98.9 2.8E-06 6.1E-11 83.7 30.4 78 343-429 254-346 (374)
61 cd03796 GT1_PIG-A_like This fa 98.9 2.4E-06 5.2E-11 86.9 29.3 124 285-420 193-332 (398)
62 cd03825 GT1_wcfI_like This fam 98.9 3.3E-06 7.1E-11 84.2 29.3 109 343-459 242-362 (365)
63 cd03798 GT1_wlbH_like This fam 98.9 4.5E-06 9.9E-11 82.5 29.5 130 284-426 201-346 (377)
64 cd03821 GT1_Bme6_like This fam 98.8 4.9E-06 1.1E-10 82.5 29.1 84 343-431 260-352 (375)
65 cd03805 GT1_ALG2_like This fam 98.8 7.9E-06 1.7E-10 82.7 30.4 79 343-427 278-367 (392)
66 PRK05749 3-deoxy-D-manno-octul 98.8 1E-05 2.2E-10 83.0 30.7 82 346-432 303-396 (425)
67 TIGR02468 sucrsPsyn_pln sucros 98.8 2.1E-05 4.5E-10 86.7 34.1 386 5-432 165-645 (1050)
68 cd03795 GT1_like_4 This family 98.8 1.3E-05 2.7E-10 79.7 28.9 131 285-429 191-337 (357)
69 cd03807 GT1_WbnK_like This fam 98.7 4.1E-05 8.9E-10 75.5 31.8 72 343-420 249-331 (365)
70 cd04955 GT1_like_6 This family 98.7 1.5E-05 3.2E-10 79.4 28.0 153 288-458 196-361 (363)
71 PF04007 DUF354: Protein of un 98.7 1.8E-05 3.9E-10 77.5 26.4 296 10-420 1-309 (335)
72 PRK09922 UDP-D-galactose:(gluc 98.7 5.3E-06 1.1E-10 83.1 23.5 123 286-420 181-323 (359)
73 PRK14089 ipid-A-disaccharide s 98.7 8.2E-06 1.8E-10 80.5 23.8 136 285-438 168-332 (347)
74 cd03799 GT1_amsK_like This is 98.7 2E-05 4.3E-10 78.2 27.0 132 284-427 178-330 (355)
75 TIGR02472 sucr_P_syn_N sucrose 98.7 7.4E-05 1.6E-09 77.0 31.7 77 343-428 315-410 (439)
76 cd03822 GT1_ecORF704_like This 98.7 2.3E-05 5E-10 77.8 27.1 75 343-420 245-333 (366)
77 cd03786 GT1_UDP-GlcNAc_2-Epime 98.7 2.2E-06 4.7E-11 85.9 19.6 134 283-429 197-342 (363)
78 cd04951 GT1_WbdM_like This fam 98.6 1.9E-05 4.1E-10 78.5 25.1 83 343-433 243-336 (360)
79 cd03811 GT1_WabH_like This fam 98.6 1.6E-05 3.4E-10 77.9 24.0 135 284-433 188-341 (353)
80 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 1E-05 2.2E-10 81.1 20.9 131 284-420 201-338 (365)
81 cd03802 GT1_AviGT4_like This f 98.5 3.5E-05 7.6E-10 75.8 23.7 122 287-420 173-307 (335)
82 cd03819 GT1_WavL_like This fam 98.5 0.00024 5.1E-09 70.5 29.6 128 284-420 184-329 (355)
83 TIGR02470 sucr_synth sucrose s 98.5 0.00082 1.8E-08 72.7 34.8 130 9-151 255-416 (784)
84 cd03809 GT1_mtfB_like This fam 98.5 6.9E-05 1.5E-09 74.3 24.8 89 343-436 251-348 (365)
85 cd03812 GT1_CapH_like This fam 98.5 9.4E-05 2E-09 73.5 25.8 83 343-430 247-337 (358)
86 cd05844 GT1_like_7 Glycosyltra 98.5 0.00022 4.7E-09 71.2 28.5 78 343-429 243-341 (367)
87 PLN02846 digalactosyldiacylgly 98.4 0.00039 8.4E-09 71.2 29.1 99 349-464 288-394 (462)
88 TIGR02149 glgA_Coryne glycogen 98.4 0.00053 1.1E-08 69.2 29.9 127 286-428 202-356 (388)
89 TIGR03088 stp2 sugar transfera 98.4 0.001 2.2E-08 66.9 30.8 106 343-460 253-371 (374)
90 PLN00142 sucrose synthase 98.3 0.00039 8.5E-09 75.2 27.5 79 343-430 640-742 (815)
91 PLN02275 transferase, transfer 98.3 0.001 2.2E-08 66.9 28.9 69 345-419 286-371 (371)
92 PRK15427 colanic acid biosynth 98.3 0.0013 2.9E-08 67.0 28.2 72 343-420 277-369 (406)
93 cd03792 GT1_Trehalose_phosphor 98.2 0.00094 2E-08 67.1 26.5 106 343-460 250-370 (372)
94 PF02350 Epimerase_2: UDP-N-ac 98.2 3.9E-05 8.4E-10 76.2 15.3 138 282-433 178-327 (346)
95 PRK15179 Vi polysaccharide bio 98.2 0.0059 1.3E-07 65.9 32.8 86 343-434 572-673 (694)
96 PLN02949 transferase, transfer 98.2 0.0082 1.8E-07 62.1 32.8 105 343-460 333-455 (463)
97 TIGR03087 stp1 sugar transfera 98.2 0.00012 2.5E-09 74.5 18.0 80 343-429 278-367 (397)
98 COG1519 KdtA 3-deoxy-D-manno-o 98.1 0.0052 1.1E-07 60.9 27.8 307 17-431 56-393 (419)
99 PRK01021 lpxB lipid-A-disaccha 98.1 0.0023 5E-08 66.8 26.2 181 241-442 375-589 (608)
100 KOG3349 Predicted glycosyltran 98.1 5.6E-05 1.2E-09 63.2 10.8 124 286-418 5-144 (170)
101 COG0381 WecB UDP-N-acetylgluco 98.1 0.0015 3.2E-08 64.1 22.3 103 345-461 262-373 (383)
102 cd03806 GT1_ALG11_like This fa 98.1 0.0042 9.1E-08 63.6 27.0 73 343-420 303-391 (419)
103 cd04950 GT1_like_1 Glycosyltra 98.0 0.012 2.6E-07 59.3 29.7 73 344-420 253-339 (373)
104 PF02684 LpxB: Lipid-A-disacch 98.0 0.002 4.4E-08 64.1 23.0 188 241-448 147-364 (373)
105 PRK00654 glgA glycogen synthas 98.0 0.0047 1E-07 64.2 26.3 127 286-420 283-427 (466)
106 cd03804 GT1_wbaZ_like This fam 97.9 0.0021 4.5E-08 64.0 21.0 121 287-420 197-325 (351)
107 PLN02501 digalactosyldiacylgly 97.7 0.021 4.5E-07 60.6 24.3 70 346-420 602-680 (794)
108 TIGR02095 glgA glycogen/starch 97.6 0.11 2.4E-06 54.1 31.0 127 286-420 292-436 (473)
109 TIGR02918 accessory Sec system 97.6 0.0096 2.1E-07 62.2 21.8 94 343-438 374-484 (500)
110 COG5017 Uncharacterized conser 97.6 0.00046 9.9E-09 56.8 8.7 99 287-404 2-114 (161)
111 PF00534 Glycos_transf_1: Glyc 97.6 0.0012 2.6E-08 58.3 12.6 82 343-433 71-167 (172)
112 cd03813 GT1_like_3 This family 97.6 0.017 3.6E-07 60.2 22.9 83 343-430 352-448 (475)
113 cd03791 GT1_Glycogen_synthase_ 97.6 0.085 1.8E-06 54.9 28.0 124 286-420 297-441 (476)
114 COG0763 LpxB Lipid A disacchar 97.5 0.034 7.3E-07 54.7 22.3 190 247-459 157-379 (381)
115 PF13844 Glyco_transf_41: Glyc 97.4 0.0028 6E-08 64.6 14.0 141 282-431 282-437 (468)
116 PLN02316 synthase/transferase 97.4 0.068 1.5E-06 59.8 24.9 111 344-461 899-1033(1036)
117 PRK15484 lipopolysaccharide 1, 97.3 0.016 3.4E-07 58.5 17.5 108 343-459 255-375 (380)
118 cd04949 GT1_gtfA_like This fam 97.2 0.061 1.3E-06 53.8 21.3 75 343-420 259-344 (372)
119 cd04946 GT1_AmsK_like This fam 97.2 0.0079 1.7E-07 61.3 14.1 102 344-455 288-405 (407)
120 PRK10422 lipopolysaccharide co 97.0 0.19 4.1E-06 50.2 22.4 110 6-149 2-114 (352)
121 KOG2941 Beta-1,4-mannosyltrans 96.8 0.51 1.1E-05 45.6 26.5 348 6-420 9-404 (444)
122 TIGR02193 heptsyl_trn_I lipopo 96.8 0.091 2E-06 51.6 17.7 133 276-419 171-319 (319)
123 PRK15490 Vi polysaccharide bio 96.8 0.89 1.9E-05 47.7 27.6 47 343-391 453-504 (578)
124 PRK10017 colanic acid biosynth 96.7 0.85 1.8E-05 46.6 31.0 175 275-461 225-424 (426)
125 PRK10964 ADP-heptose:LPS hepto 96.6 0.47 1E-05 46.6 21.2 126 284-420 178-321 (322)
126 PF13692 Glyco_trans_1_4: Glyc 96.5 0.0058 1.3E-07 51.5 6.2 75 344-420 52-134 (135)
127 PRK10125 putative glycosyl tra 96.5 1.2 2.5E-05 45.5 28.0 110 287-415 243-365 (405)
128 COG0859 RfaF ADP-heptose:LPS h 96.4 0.48 1E-05 46.9 19.4 107 9-150 1-109 (334)
129 PF06722 DUF1205: Protein of u 96.1 0.01 2.3E-07 46.9 4.8 53 271-323 27-84 (97)
130 PRK10916 ADP-heptose:LPS hepto 96.1 1.3 2.9E-05 43.9 21.3 103 10-148 1-106 (348)
131 COG1817 Uncharacterized protei 96.1 1.4 3.1E-05 42.2 23.9 113 11-156 2-117 (346)
132 PF13477 Glyco_trans_4_2: Glyc 96.0 0.12 2.5E-06 43.7 11.3 103 11-151 1-107 (139)
133 PHA01633 putative glycosyl tra 95.7 0.4 8.6E-06 47.3 14.9 94 343-438 199-324 (335)
134 TIGR02201 heptsyl_trn_III lipo 95.6 1.5 3.3E-05 43.4 19.1 106 11-149 1-109 (344)
135 PRK09814 beta-1,6-galactofuran 95.5 0.055 1.2E-06 53.5 8.6 92 343-440 205-318 (333)
136 PF13524 Glyco_trans_1_2: Glyc 95.4 0.13 2.8E-06 40.1 8.7 78 370-457 9-92 (92)
137 TIGR02195 heptsyl_trn_II lipop 95.1 3.7 8.1E-05 40.4 20.8 102 11-148 1-105 (334)
138 COG3914 Spy Predicted O-linked 94.7 0.15 3.3E-06 52.4 8.9 102 282-390 427-538 (620)
139 PF13579 Glyco_trans_4_4: Glyc 94.6 0.091 2E-06 45.0 6.3 97 25-151 6-104 (160)
140 cd03789 GT1_LPS_heptosyltransf 94.4 3.2 7E-05 39.7 17.2 102 11-148 1-105 (279)
141 PRK14098 glycogen synthase; Pr 94.4 1.1 2.3E-05 47.0 14.8 161 286-461 308-485 (489)
142 PF01975 SurE: Survival protei 94.3 0.34 7.3E-06 43.9 9.4 117 10-152 1-134 (196)
143 PF12000 Glyco_trans_4_3: Gkyc 94.3 0.38 8.3E-06 42.3 9.4 43 109-151 53-96 (171)
144 KOG4626 O-linked N-acetylgluco 93.9 0.49 1.1E-05 49.1 10.3 103 282-392 756-867 (966)
145 PHA01630 putative group 1 glyc 93.6 2.3 5.1E-05 41.9 14.7 86 351-438 196-311 (331)
146 COG1618 Predicted nucleotide k 92.4 0.97 2.1E-05 39.1 8.5 44 7-50 3-46 (179)
147 PRK13932 stationary phase surv 91.8 3.1 6.8E-05 39.2 12.0 116 8-151 4-133 (257)
148 PLN02939 transferase, transfer 91.7 3.9 8.5E-05 45.6 14.2 75 343-420 835-930 (977)
149 PF06258 Mito_fiss_Elm1: Mitoc 90.7 5.8 0.00013 38.7 13.2 39 354-393 221-259 (311)
150 PF13439 Glyco_transf_4: Glyco 90.5 3.6 7.8E-05 35.5 10.8 31 19-49 11-41 (177)
151 TIGR02400 trehalose_OtsA alpha 90.3 1.8 4E-05 44.7 9.8 102 350-460 341-455 (456)
152 cd01635 Glycosyltransferase_GT 90.0 2 4.3E-05 38.7 9.1 49 343-393 159-215 (229)
153 PRK13933 stationary phase surv 89.7 5.5 0.00012 37.5 11.6 114 10-151 1-129 (253)
154 cd03788 GT1_TPS Trehalose-6-Ph 89.2 1.6 3.5E-05 45.3 8.5 102 349-459 345-459 (460)
155 TIGR00087 surE 5'/3'-nucleotid 89.1 6.5 0.00014 36.9 11.7 112 10-151 1-128 (244)
156 PF09314 DUF1972: Domain of un 89.0 14 0.00031 32.9 13.2 43 9-51 1-48 (185)
157 COG0496 SurE Predicted acid ph 86.6 4.7 0.0001 37.7 8.9 112 10-152 1-126 (252)
158 PF08660 Alg14: Oligosaccharid 86.1 9 0.0002 33.8 10.2 31 121-151 91-129 (170)
159 PRK13935 stationary phase surv 86.1 14 0.0003 34.8 11.8 113 10-151 1-128 (253)
160 PRK02261 methylaspartate mutas 86.0 2 4.2E-05 36.5 5.7 46 8-53 2-47 (137)
161 PRK13934 stationary phase surv 85.7 15 0.00032 34.9 11.8 112 10-151 1-127 (266)
162 PF02951 GSH-S_N: Prokaryotic 85.3 1.4 3.1E-05 36.2 4.3 40 10-49 1-43 (119)
163 TIGR02919 accessory Sec system 84.7 19 0.00041 37.0 13.2 91 345-438 328-425 (438)
164 PRK00346 surE 5'(3')-nucleotid 84.3 17 0.00038 34.1 11.6 111 10-151 1-124 (250)
165 COG0003 ArsA Predicted ATPase 83.9 14 0.0003 36.3 11.2 42 9-50 1-43 (322)
166 PF02441 Flavoprotein: Flavopr 83.1 1.7 3.8E-05 36.3 4.1 43 10-53 1-43 (129)
167 COG0438 RfaG Glycosyltransfera 83.0 43 0.00092 31.7 16.8 84 344-432 256-350 (381)
168 TIGR03713 acc_sec_asp1 accesso 82.6 4.8 0.0001 42.4 8.0 71 345-420 409-487 (519)
169 PRK14099 glycogen synthase; Pr 82.3 46 0.00099 34.8 15.1 40 8-47 2-47 (485)
170 PF04464 Glyphos_transf: CDP-G 81.8 2 4.3E-05 43.1 4.7 105 343-454 250-366 (369)
171 PF05159 Capsule_synth: Capsul 80.7 16 0.00034 34.8 10.3 44 345-391 183-226 (269)
172 cd02067 B12-binding B12 bindin 80.0 3.2 6.9E-05 34.0 4.6 42 11-52 1-42 (119)
173 cd01425 RPS2 Ribosomal protein 79.9 7.3 0.00016 35.1 7.2 33 121-153 126-160 (193)
174 cd00561 CobA_CobO_BtuR ATP:cor 78.9 20 0.00044 31.2 9.3 34 11-44 4-37 (159)
175 PRK13931 stationary phase surv 77.9 20 0.00043 34.0 9.7 112 10-151 1-129 (261)
176 PF00731 AIRC: AIR carboxylase 77.0 16 0.00034 31.4 7.9 128 287-440 3-148 (150)
177 PLN03063 alpha,alpha-trehalose 76.7 9.1 0.0002 42.6 8.2 105 351-463 362-479 (797)
178 PRK05986 cob(I)alamin adenolsy 76.3 23 0.0005 31.8 9.1 103 9-132 22-125 (191)
179 cd07039 TPP_PYR_POX Pyrimidine 76.1 36 0.00078 29.7 10.3 27 365-391 65-97 (164)
180 PRK08305 spoVFB dipicolinate s 75.5 5.6 0.00012 35.9 5.1 45 9-53 5-49 (196)
181 PRK12342 hypothetical protein; 74.8 38 0.00082 32.0 10.6 31 122-152 109-145 (254)
182 COG2910 Putative NADH-flavin r 74.2 4.1 8.8E-05 36.1 3.7 37 10-50 1-37 (211)
183 PRK07313 phosphopantothenoylcy 74.0 4.8 0.0001 35.9 4.3 44 9-53 1-44 (182)
184 smart00851 MGS MGS-like domain 73.7 30 0.00065 26.6 8.3 26 26-53 2-27 (90)
185 PRK14098 glycogen synthase; Pr 73.0 5.8 0.00013 41.5 5.3 42 6-47 2-49 (489)
186 KOG1387 Glycosyltransferase [C 72.8 1E+02 0.0022 30.4 21.7 95 340-440 332-445 (465)
187 PRK06029 3-octaprenyl-4-hydrox 72.4 6.4 0.00014 35.2 4.7 44 9-53 1-45 (185)
188 PRK02155 ppnK NAD(+)/NADH kina 72.3 14 0.0003 35.7 7.3 52 360-421 62-119 (291)
189 PRK02797 4-alpha-L-fucosyltran 71.7 27 0.00059 33.8 8.8 45 345-389 206-256 (322)
190 PRK14501 putative bifunctional 71.5 15 0.00033 40.5 8.3 107 348-463 345-464 (726)
191 PRK12311 rpsB 30S ribosomal pr 71.4 13 0.00027 36.5 6.7 34 121-154 151-186 (326)
192 cd00550 ArsA_ATPase Oxyanion-t 71.2 25 0.00054 33.2 8.7 36 13-48 4-39 (254)
193 COG0052 RpsB Ribosomal protein 71.1 22 0.00048 33.1 7.8 34 121-154 155-190 (252)
194 PF01075 Glyco_transf_9: Glyco 71.1 11 0.00024 35.2 6.3 98 283-389 104-208 (247)
195 PF10649 DUF2478: Protein of u 70.9 53 0.0011 28.6 9.8 113 13-153 2-133 (159)
196 cd07038 TPP_PYR_PDC_IPDC_like 70.9 39 0.00084 29.4 9.2 27 365-391 61-93 (162)
197 PRK05920 aromatic acid decarbo 69.9 8.3 0.00018 35.1 4.8 45 8-53 2-46 (204)
198 cd03793 GT1_Glycogen_synthase_ 69.0 5.6 0.00012 42.0 4.0 64 355-420 468-551 (590)
199 TIGR00715 precor6x_red precorr 68.3 29 0.00062 32.9 8.3 35 10-49 1-35 (256)
200 COG2109 BtuR ATP:corrinoid ade 66.1 51 0.0011 29.5 8.7 98 12-133 31-133 (198)
201 PLN02470 acetolactate synthase 65.9 39 0.00085 36.2 9.9 27 364-390 77-109 (585)
202 PF02310 B12-binding: B12 bind 65.4 18 0.00039 29.3 5.8 43 10-52 1-43 (121)
203 COG1703 ArgK Putative periplas 65.1 46 0.001 32.1 8.8 43 10-52 52-94 (323)
204 PF12146 Hydrolase_4: Putative 64.6 19 0.00041 27.2 5.2 35 9-43 15-49 (79)
205 PF02142 MGS: MGS-like domain 64.3 13 0.00029 29.0 4.5 84 26-147 2-94 (95)
206 COG4394 Uncharacterized protei 64.1 1.4E+02 0.003 28.7 11.8 68 346-418 239-317 (370)
207 PRK03359 putative electron tra 64.1 79 0.0017 29.9 10.3 31 122-152 112-148 (256)
208 PRK06718 precorrin-2 dehydroge 64.0 79 0.0017 28.6 10.1 134 283-441 10-165 (202)
209 PRK12446 undecaprenyldiphospho 63.3 31 0.00066 34.4 8.0 96 285-388 3-119 (352)
210 COG1484 DnaC DNA replication p 63.2 12 0.00027 35.3 4.9 45 9-53 105-149 (254)
211 COG2185 Sbm Methylmalonyl-CoA 63.1 14 0.00031 31.3 4.6 45 8-52 11-55 (143)
212 TIGR02370 pyl_corrinoid methyl 63.0 18 0.00039 32.7 5.7 46 8-53 83-128 (197)
213 TIGR00708 cobA cob(I)alamin ad 62.7 1.1E+02 0.0024 27.0 11.6 34 10-43 6-39 (173)
214 cd01424 MGS_CPS_II Methylglyox 62.7 69 0.0015 25.6 8.6 85 21-149 10-101 (110)
215 PRK13789 phosphoribosylamine-- 62.5 35 0.00076 35.0 8.3 37 8-49 3-39 (426)
216 PRK05647 purN phosphoribosylgl 62.3 79 0.0017 28.6 9.7 35 9-46 1-37 (200)
217 TIGR00347 bioD dethiobiotin sy 62.3 53 0.0012 28.3 8.5 28 16-43 5-32 (166)
218 cd02071 MM_CoA_mut_B12_BD meth 61.7 16 0.00035 30.1 4.7 42 11-52 1-42 (122)
219 CHL00067 rps2 ribosomal protei 61.3 31 0.00068 32.0 7.1 35 121-155 160-196 (230)
220 cd02070 corrinoid_protein_B12- 60.4 20 0.00042 32.5 5.5 44 9-52 82-125 (201)
221 PF04413 Glycos_transf_N: 3-De 60.1 24 0.00053 31.5 5.9 95 15-150 26-125 (186)
222 PF00551 Formyl_trans_N: Formy 60.1 60 0.0013 28.7 8.5 37 10-49 1-39 (181)
223 cd07035 TPP_PYR_POX_like Pyrim 59.8 96 0.0021 26.4 9.6 27 366-392 62-94 (155)
224 PF07015 VirC1: VirC1 protein; 59.7 21 0.00045 33.1 5.5 43 11-53 3-46 (231)
225 COG1066 Sms Predicted ATP-depe 59.5 8.5 0.00018 38.6 3.1 42 11-53 95-136 (456)
226 PF07429 Glyco_transf_56: 4-al 59.2 55 0.0012 32.3 8.4 76 345-420 245-332 (360)
227 TIGR01011 rpsB_bact ribosomal 59.2 35 0.00075 31.6 6.9 34 121-154 154-189 (225)
228 cd01423 MGS_CPS_I_III Methylgl 58.9 77 0.0017 25.6 8.3 87 22-148 11-106 (116)
229 TIGR02852 spore_dpaB dipicolin 58.4 17 0.00036 32.6 4.5 44 10-53 1-44 (187)
230 PRK01077 cobyrinic acid a,c-di 57.9 79 0.0017 32.7 10.1 37 9-45 3-40 (451)
231 PF02844 GARS_N: Phosphoribosy 57.5 79 0.0017 25.1 7.7 28 121-148 61-91 (100)
232 COG4370 Uncharacterized protei 57.5 21 0.00046 34.3 5.2 86 349-440 299-396 (412)
233 COG0552 FtsY Signal recognitio 57.1 1.1E+02 0.0024 30.0 10.0 47 7-53 137-183 (340)
234 PRK04885 ppnK inorganic polyph 57.0 12 0.00026 35.6 3.6 51 361-421 35-93 (265)
235 COG2085 Predicted dinucleotide 56.3 37 0.00079 31.0 6.3 36 9-49 1-36 (211)
236 PF01012 ETF: Electron transfe 55.7 46 0.001 28.8 6.9 108 12-151 2-122 (164)
237 PRK06849 hypothetical protein; 55.4 23 0.00051 35.7 5.7 38 7-48 2-39 (389)
238 PRK06249 2-dehydropantoate 2-r 55.0 31 0.00067 33.6 6.3 39 9-53 5-43 (313)
239 PF09001 DUF1890: Domain of un 54.8 15 0.00033 30.8 3.3 34 20-53 10-43 (139)
240 PF06925 MGDG_synth: Monogalac 54.0 49 0.0011 28.8 6.8 44 103-151 75-124 (169)
241 PRK06904 replicative DNA helic 54.0 36 0.00078 35.4 6.8 43 11-53 223-266 (472)
242 TIGR02398 gluc_glyc_Psyn gluco 53.8 2.1E+02 0.0047 29.9 12.4 106 347-461 364-482 (487)
243 PRK05299 rpsB 30S ribosomal pr 53.6 38 0.00083 32.1 6.3 34 121-154 156-191 (258)
244 COG0143 MetG Methionyl-tRNA sy 53.1 23 0.00051 37.4 5.2 40 8-47 3-52 (558)
245 PF01075 Glyco_transf_9: Glyco 53.1 67 0.0015 29.7 8.1 100 8-152 104-211 (247)
246 PRK14077 pnk inorganic polypho 53.0 16 0.00034 35.3 3.7 59 354-422 57-121 (287)
247 PRK08229 2-dehydropantoate 2-r 53.0 21 0.00045 35.2 4.7 40 9-53 2-41 (341)
248 cd02069 methionine_synthase_B1 52.8 32 0.0007 31.5 5.6 45 8-52 87-131 (213)
249 PRK14099 glycogen synthase; Pr 52.6 22 0.00048 37.1 5.1 108 343-461 348-478 (485)
250 PF04127 DFP: DNA / pantothena 52.5 14 0.0003 33.1 3.0 38 10-47 4-53 (185)
251 PRK08506 replicative DNA helic 52.4 82 0.0018 32.8 9.1 43 11-53 194-236 (472)
252 COG1748 LYS9 Saccharopine dehy 52.1 1.2E+02 0.0026 30.6 9.8 40 9-53 1-42 (389)
253 PF01210 NAD_Gly3P_dh_N: NAD-d 51.8 11 0.00024 32.6 2.3 32 11-47 1-32 (157)
254 PRK02649 ppnK inorganic polyph 51.6 17 0.00037 35.4 3.7 52 360-421 67-124 (305)
255 PF00289 CPSase_L_chain: Carba 50.9 42 0.0009 27.2 5.3 69 298-379 10-88 (110)
256 cd00532 MGS-like MGS-like doma 50.9 1E+02 0.0022 24.8 7.8 30 22-53 10-39 (112)
257 KOG0832 Mitochondrial/chloropl 50.8 8.4 0.00018 35.2 1.3 35 19-53 90-125 (251)
258 TIGR01501 MthylAspMutase methy 50.8 37 0.0008 28.6 5.1 43 10-52 2-44 (134)
259 PRK08155 acetolactate synthase 50.6 1.1E+02 0.0024 32.6 10.1 26 365-390 78-109 (564)
260 cd01635 Glycosyltransferase_GT 50.3 22 0.00047 31.7 4.2 26 19-44 12-37 (229)
261 CHL00072 chlL photochlorophyll 50.1 28 0.0006 33.6 5.0 38 10-47 1-38 (290)
262 TIGR01162 purE phosphoribosyla 49.9 1.2E+02 0.0025 26.3 8.1 107 296-441 36-147 (156)
263 TIGR00421 ubiX_pad polyprenyl 49.8 22 0.00048 31.6 3.9 42 11-53 1-42 (181)
264 PF02572 CobA_CobO_BtuR: ATP:c 49.6 39 0.00084 29.8 5.3 102 10-132 4-106 (172)
265 cd01980 Chlide_reductase_Y Chl 49.6 88 0.0019 32.0 8.8 27 121-150 349-375 (416)
266 TIGR00173 menD 2-succinyl-5-en 49.2 1E+02 0.0022 31.6 9.3 56 365-420 65-153 (432)
267 PRK01911 ppnK inorganic polyph 49.1 22 0.00047 34.4 4.0 54 358-421 61-120 (292)
268 cd07037 TPP_PYR_MenD Pyrimidin 49.1 62 0.0013 28.2 6.5 26 366-391 63-94 (162)
269 TIGR02015 BchY chlorophyllide 48.3 1.5E+02 0.0032 30.4 10.1 33 10-47 286-318 (422)
270 PRK04539 ppnK inorganic polyph 48.2 21 0.00047 34.5 3.8 53 359-421 66-124 (296)
271 PLN02939 transferase, transfer 48.1 35 0.00075 38.5 5.8 41 7-47 479-525 (977)
272 PRK11199 tyrA bifunctional cho 48.1 1.3E+02 0.0028 30.3 9.5 36 7-47 96-132 (374)
273 TIGR02113 coaC_strep phosphopa 47.6 26 0.00056 31.1 4.0 42 11-53 2-43 (177)
274 PRK08006 replicative DNA helic 47.2 1E+02 0.0023 32.0 8.9 43 11-53 226-269 (471)
275 PLN02929 NADH kinase 47.1 21 0.00047 34.5 3.6 60 360-421 63-137 (301)
276 PLN02935 Bifunctional NADH kin 47.1 22 0.00048 36.9 3.8 52 360-421 261-318 (508)
277 PRK06988 putative formyltransf 46.7 1.5E+02 0.0033 28.8 9.6 33 9-46 2-34 (312)
278 PRK10867 signal recognition pa 46.3 2E+02 0.0042 29.6 10.5 44 9-52 100-144 (433)
279 PRK00090 bioD dithiobiotin syn 46.3 1E+02 0.0022 28.1 8.0 33 12-44 2-35 (222)
280 PRK12921 2-dehydropantoate 2-r 45.8 39 0.00085 32.6 5.4 39 10-53 1-39 (305)
281 PRK02231 ppnK inorganic polyph 45.6 16 0.00035 34.9 2.5 56 355-420 36-97 (272)
282 PRK07206 hypothetical protein; 45.1 1E+02 0.0022 31.3 8.5 34 9-47 2-35 (416)
283 TIGR01470 cysG_Nterm siroheme 44.9 2.4E+02 0.0052 25.6 10.4 132 284-440 10-164 (205)
284 PRK11519 tyrosine kinase; Prov 44.9 3.4E+02 0.0073 30.1 12.9 40 9-48 525-566 (719)
285 KOG0780 Signal recognition par 44.9 1.3E+02 0.0027 30.4 8.3 43 8-50 100-142 (483)
286 PRK07710 acetolactate synthase 44.8 60 0.0013 34.7 7.0 26 365-390 80-111 (571)
287 TIGR00460 fmt methionyl-tRNA f 44.8 1.9E+02 0.004 28.3 9.8 32 10-46 1-32 (313)
288 PF02374 ArsA_ATPase: Anion-tr 44.5 35 0.00076 33.2 4.7 42 10-51 1-43 (305)
289 COG3640 CooC CO dehydrogenase 44.5 1.2E+02 0.0026 28.3 7.7 44 10-53 1-45 (255)
290 cd02032 Bchl_like This family 44.2 35 0.00077 32.3 4.7 37 10-46 1-37 (267)
291 PRK05579 bifunctional phosphop 44.0 40 0.00088 34.2 5.2 45 8-53 5-49 (399)
292 PRK06732 phosphopantothenate-- 44.0 32 0.00069 31.9 4.2 20 27-46 30-49 (229)
293 PF03446 NAD_binding_2: NAD bi 43.8 27 0.00058 30.4 3.5 32 9-45 1-32 (163)
294 TIGR02655 circ_KaiC circadian 43.5 1.2E+02 0.0026 31.7 8.8 44 10-53 264-307 (484)
295 TIGR01281 DPOR_bchL light-inde 43.4 38 0.00082 32.0 4.7 36 10-45 1-36 (268)
296 cd01974 Nitrogenase_MoFe_beta 42.7 1.9E+02 0.0041 29.7 10.1 27 121-150 376-402 (435)
297 TIGR02195 heptsyl_trn_II lipop 42.4 1.1E+02 0.0024 29.8 8.1 99 10-151 175-278 (334)
298 PRK08840 replicative DNA helic 42.2 1.3E+02 0.0028 31.2 8.7 43 11-53 219-262 (464)
299 PLN02496 probable phosphopanto 42.2 36 0.00078 31.0 4.0 45 7-53 17-61 (209)
300 TIGR00959 ffh signal recogniti 41.8 1.9E+02 0.0041 29.7 9.6 43 9-51 99-142 (428)
301 PRK10916 ADP-heptose:LPS hepto 41.7 1.4E+02 0.003 29.5 8.6 100 11-151 182-288 (348)
302 TIGR02700 flavo_MJ0208 archaeo 41.6 41 0.00089 31.3 4.5 42 12-53 2-45 (234)
303 PRK06522 2-dehydropantoate 2-r 41.4 38 0.00081 32.6 4.5 39 10-53 1-40 (304)
304 PRK03372 ppnK inorganic polyph 41.0 36 0.00078 33.1 4.1 53 359-421 70-128 (306)
305 COG0240 GpsA Glycerol-3-phosph 40.8 38 0.00083 33.2 4.2 34 9-47 1-34 (329)
306 COG2894 MinD Septum formation 40.5 49 0.0011 30.5 4.5 39 9-47 1-41 (272)
307 PF08323 Glyco_transf_5: Starc 40.4 40 0.00086 31.6 4.3 26 22-47 18-43 (245)
308 TIGR00521 coaBC_dfp phosphopan 40.4 42 0.0009 34.0 4.6 44 9-53 3-46 (390)
309 PRK00784 cobyric acid synthase 40.3 2.3E+02 0.0049 29.7 10.3 36 10-45 3-39 (488)
310 PRK08057 cobalt-precorrin-6x r 40.1 2.3E+02 0.0049 26.7 9.2 35 9-48 2-36 (248)
311 PRK07004 replicative DNA helic 40.0 1.4E+02 0.0031 30.9 8.6 43 11-53 215-258 (460)
312 TIGR02699 archaeo_AfpA archaeo 39.9 47 0.001 29.4 4.3 41 12-53 2-44 (174)
313 PRK08527 acetolactate synthase 39.8 1.7E+02 0.0036 31.2 9.4 26 365-390 68-99 (563)
314 cd01016 TroA Metal binding pro 39.8 3.4E+02 0.0074 25.8 11.9 31 409-440 115-145 (276)
315 TIGR00118 acolac_lg acetolacta 39.7 1.5E+02 0.0033 31.5 9.1 26 365-390 66-97 (558)
316 cd01121 Sms Sms (bacterial rad 39.7 62 0.0014 32.5 5.7 42 12-53 85-126 (372)
317 PRK01231 ppnK inorganic polyph 39.6 45 0.00097 32.3 4.6 52 360-421 61-118 (295)
318 PRK01185 ppnK inorganic polyph 39.6 32 0.00068 32.9 3.4 51 361-421 52-105 (271)
319 PRK13234 nifH nitrogenase redu 39.5 54 0.0012 31.7 5.2 39 8-46 3-41 (295)
320 PRK14075 pnk inorganic polypho 39.4 36 0.00078 32.2 3.8 51 361-421 41-94 (256)
321 KOG0853 Glycosyltransferase [C 39.3 48 0.001 34.4 4.8 52 375-433 381-442 (495)
322 COG0287 TyrA Prephenate dehydr 39.2 3E+02 0.0065 26.4 10.0 41 9-54 3-43 (279)
323 cd03789 GT1_LPS_heptosyltransf 39.0 1.9E+02 0.004 27.4 8.8 31 23-53 139-169 (279)
324 PRK14106 murD UDP-N-acetylmura 38.9 2E+02 0.0043 29.5 9.6 33 10-47 6-38 (450)
325 KOG1250 Threonine/serine dehyd 38.8 65 0.0014 32.3 5.4 106 285-420 195-315 (457)
326 PRK06321 replicative DNA helic 38.8 2.1E+02 0.0045 29.8 9.5 43 11-53 228-271 (472)
327 TIGR01162 purE phosphoribosyla 38.7 2E+02 0.0044 24.9 7.9 79 291-393 5-86 (156)
328 PRK03708 ppnK inorganic polyph 38.7 40 0.00087 32.3 4.1 53 361-421 57-112 (277)
329 COG2236 Predicted phosphoribos 38.5 80 0.0017 28.4 5.6 49 106-154 13-64 (192)
330 PRK14619 NAD(P)H-dependent gly 38.5 82 0.0018 30.6 6.3 34 9-47 4-37 (308)
331 TIGR03878 thermo_KaiC_2 KaiC d 38.2 3.5E+02 0.0075 25.5 12.5 39 11-49 38-76 (259)
332 cd02040 NifH NifH gene encodes 38.2 53 0.0011 31.0 4.9 38 9-46 1-38 (270)
333 PF01695 IstB_IS21: IstB-like 38.1 48 0.001 29.3 4.2 45 9-53 47-91 (178)
334 PRK11269 glyoxylate carboligas 38.0 1.8E+02 0.0038 31.3 9.3 26 365-390 70-101 (591)
335 PF02702 KdpD: Osmosensitive K 37.7 50 0.0011 29.9 4.1 40 9-48 5-44 (211)
336 PRK07414 cob(I)yrinic acid a,c 37.6 2.8E+02 0.006 24.7 8.8 37 9-45 21-57 (178)
337 cd01965 Nitrogenase_MoFe_beta_ 37.6 1.2E+02 0.0026 31.0 7.7 27 121-150 370-396 (428)
338 PRK13695 putative NTPase; Prov 37.4 2.7E+02 0.0059 24.1 9.0 36 10-45 1-36 (174)
339 PRK03378 ppnK inorganic polyph 37.2 36 0.00079 32.9 3.5 59 354-422 56-120 (292)
340 PF10093 DUF2331: Uncharacteri 37.2 4.5E+02 0.0096 26.4 14.6 99 295-401 190-298 (374)
341 PF03808 Glyco_tran_WecB: Glyc 37.0 2.9E+02 0.0062 24.2 9.5 96 26-155 37-137 (172)
342 cd02065 B12-binding_like B12 b 36.8 68 0.0015 25.9 4.8 42 12-53 2-43 (125)
343 PRK05414 urocanate hydratase; 36.5 4.1E+02 0.0089 27.8 10.7 118 22-146 218-338 (556)
344 PRK06276 acetolactate synthase 36.4 1.7E+02 0.0038 31.3 8.9 40 365-404 65-123 (586)
345 PF02776 TPP_enzyme_N: Thiamin 36.2 1E+02 0.0022 26.9 6.0 27 366-392 67-99 (172)
346 PRK13230 nitrogenase reductase 36.1 62 0.0013 30.9 5.0 37 9-45 1-37 (279)
347 PRK15062 hydrogenase isoenzyme 36.1 93 0.002 30.9 6.0 142 273-463 120-270 (364)
348 COG0859 RfaF ADP-heptose:LPS h 35.8 1.8E+02 0.0039 28.6 8.3 98 10-152 176-279 (334)
349 PRK00094 gpsA NAD(P)H-dependen 35.8 48 0.001 32.3 4.3 40 9-53 1-41 (325)
350 PRK05632 phosphate acetyltrans 35.6 4.7E+02 0.01 28.7 12.2 36 10-45 3-39 (684)
351 PF00862 Sucrose_synth: Sucros 35.6 72 0.0016 33.2 5.3 118 20-152 296-433 (550)
352 PRK10416 signal recognition pa 35.5 3.5E+02 0.0075 26.5 10.1 41 9-49 114-154 (318)
353 TIGR00750 lao LAO/AO transport 35.2 2.5E+02 0.0055 27.1 9.1 43 7-49 32-74 (300)
354 PLN02695 GDP-D-mannose-3',5'-e 35.1 78 0.0017 31.6 5.7 37 5-45 17-53 (370)
355 PRK09739 hypothetical protein; 35.1 90 0.0019 28.0 5.6 37 8-44 2-41 (199)
356 PF07905 PucR: Purine cataboli 35.0 2.1E+02 0.0045 23.4 7.3 46 271-320 33-79 (123)
357 cd01421 IMPCH Inosine monophos 35.0 1.7E+02 0.0036 26.2 7.0 30 24-58 11-40 (187)
358 PRK14618 NAD(P)H-dependent gly 34.7 58 0.0013 31.9 4.7 40 9-53 4-44 (328)
359 PRK10422 lipopolysaccharide co 34.6 1.6E+02 0.0035 29.1 7.9 27 123-151 263-289 (352)
360 PRK07092 benzoylformate decarb 34.6 1.7E+02 0.0037 30.8 8.5 28 361-390 73-106 (530)
361 TIGR02720 pyruv_oxi_spxB pyruv 34.5 1.6E+02 0.0034 31.6 8.2 28 361-390 63-96 (575)
362 PRK06882 acetolactate synthase 34.2 2.2E+02 0.0047 30.5 9.2 26 365-390 69-100 (574)
363 COG4088 Predicted nucleotide k 33.8 53 0.0012 30.0 3.6 38 9-46 1-38 (261)
364 TIGR01283 nifE nitrogenase mol 33.7 3.9E+02 0.0085 27.6 10.7 91 8-149 325-419 (456)
365 PRK06756 flavodoxin; Provision 33.6 76 0.0016 26.9 4.7 37 9-45 1-38 (148)
366 PRK05380 pyrG CTP synthetase; 33.5 4.8E+02 0.01 27.6 11.0 45 9-53 1-48 (533)
367 PTZ00445 p36-lilke protein; Pr 33.5 1.6E+02 0.0034 27.0 6.6 30 21-50 74-104 (219)
368 PLN02327 CTP synthase 33.5 4.7E+02 0.01 27.8 11.0 44 10-53 1-47 (557)
369 PRK08322 acetolactate synthase 33.5 2E+02 0.0043 30.5 8.8 26 365-390 65-96 (547)
370 PF02056 Glyco_hydro_4: Family 33.4 3.5E+02 0.0076 24.1 10.9 113 21-155 39-172 (183)
371 TIGR00640 acid_CoA_mut_C methy 33.3 1.1E+02 0.0023 25.7 5.3 41 9-49 2-42 (132)
372 PRK03767 NAD(P)H:quinone oxido 33.1 76 0.0016 28.6 4.8 38 9-46 1-40 (200)
373 TIGR00345 arsA arsenite-activa 33.0 1.6E+02 0.0034 28.3 7.2 23 27-49 3-25 (284)
374 PRK14076 pnk inorganic polypho 33.0 43 0.00094 35.8 3.6 51 361-421 348-404 (569)
375 cd01020 TroA_b Metal binding p 32.8 4.3E+02 0.0092 24.9 11.1 17 425-441 124-140 (264)
376 COG3340 PepE Peptidase E [Amin 32.8 3.5E+02 0.0075 24.9 8.6 47 272-319 22-68 (224)
377 PRK13982 bifunctional SbtC-lik 32.8 57 0.0012 33.9 4.2 40 8-47 255-306 (475)
378 COG0503 Apt Adenine/guanine ph 32.8 1E+02 0.0022 27.4 5.4 37 111-149 44-82 (179)
379 PRK13982 bifunctional SbtC-lik 32.5 69 0.0015 33.3 4.8 44 9-53 70-113 (475)
380 TIGR01285 nifN nitrogenase mol 32.5 2.1E+02 0.0046 29.4 8.4 27 121-150 372-398 (432)
381 PRK07525 sulfoacetaldehyde ace 32.4 1.5E+02 0.0033 31.8 7.7 26 365-390 70-101 (588)
382 PF10083 DUF2321: Uncharacteri 32.4 85 0.0018 27.0 4.5 71 390-465 79-155 (158)
383 PRK07586 hypothetical protein; 32.4 2.5E+02 0.0054 29.5 9.2 24 367-390 68-97 (514)
384 PRK08199 thiamine pyrophosphat 32.4 3.1E+02 0.0067 29.1 10.0 26 365-390 73-104 (557)
385 PF00318 Ribosomal_S2: Ribosom 32.3 2.2E+02 0.0047 26.0 7.6 34 121-154 142-177 (211)
386 PRK00881 purH bifunctional pho 32.3 2.2E+02 0.0049 29.8 8.3 41 9-58 4-44 (513)
387 PRK03501 ppnK inorganic polyph 32.2 65 0.0014 30.6 4.2 51 362-421 40-97 (264)
388 PRK07979 acetolactate synthase 32.0 2.8E+02 0.006 29.6 9.6 26 365-390 69-100 (574)
389 COG1348 NifH Nitrogenase subun 31.9 1E+02 0.0022 28.8 5.1 45 9-53 1-45 (278)
390 TIGR01007 eps_fam capsular exo 31.9 1E+02 0.0022 27.6 5.5 38 10-47 17-56 (204)
391 PRK04328 hypothetical protein; 31.8 4E+02 0.0086 24.9 9.6 44 10-53 24-67 (249)
392 KOG3339 Predicted glycosyltran 31.6 3.3E+02 0.0072 24.4 8.0 38 10-48 39-78 (211)
393 PRK13235 nifH nitrogenase redu 31.5 75 0.0016 30.2 4.7 36 9-44 1-36 (274)
394 cd02034 CooC The accessory pro 31.2 1E+02 0.0022 25.0 4.8 37 11-47 1-37 (116)
395 COG2861 Uncharacterized protei 30.8 3.9E+02 0.0085 25.0 8.8 39 107-149 138-179 (250)
396 PF03308 ArgK: ArgK protein; 30.8 4.7E+02 0.01 24.8 10.1 121 8-150 28-151 (266)
397 TIGR01380 glut_syn glutathione 30.8 58 0.0013 31.7 3.9 42 10-51 1-45 (312)
398 PRK06965 acetolactate synthase 30.3 2.6E+02 0.0056 30.0 9.0 25 366-390 87-117 (587)
399 PF06849 DUF1246: Protein of u 30.3 1.7E+02 0.0036 24.2 5.6 68 289-374 2-76 (124)
400 COG2159 Predicted metal-depend 30.2 2.3E+02 0.005 27.3 7.8 102 271-404 115-219 (293)
401 TIGR01005 eps_transp_fam exopo 30.1 4E+02 0.0087 29.6 10.7 40 9-48 545-586 (754)
402 TIGR03880 KaiC_arch_3 KaiC dom 30.0 1.3E+02 0.0028 27.4 5.9 43 11-53 18-60 (224)
403 PRK14569 D-alanyl-alanine synt 29.8 1.1E+02 0.0023 29.6 5.5 38 9-46 3-44 (296)
404 cd01141 TroA_d Periplasmic bin 29.7 76 0.0016 27.9 4.2 30 121-150 68-99 (186)
405 PRK10037 cell division protein 29.7 87 0.0019 29.3 4.7 39 9-47 1-40 (250)
406 PRK06466 acetolactate synthase 29.6 3E+02 0.0064 29.4 9.3 26 365-390 69-100 (574)
407 PRK09841 cryptic autophosphory 29.6 4.4E+02 0.0095 29.2 10.8 40 9-48 530-571 (726)
408 TIGR00725 conserved hypothetic 29.5 2.9E+02 0.0062 23.9 7.6 98 272-390 21-122 (159)
409 PRK13604 luxD acyl transferase 29.5 1E+02 0.0023 30.0 5.2 36 8-43 35-70 (307)
410 PF06506 PrpR_N: Propionate ca 29.5 56 0.0012 28.8 3.2 37 362-399 33-69 (176)
411 PRK07449 2-succinyl-5-enolpyru 29.3 1.5E+02 0.0033 31.5 7.1 25 366-390 75-105 (568)
412 KOG0081 GTPase Rab27, small G 29.3 1.2E+02 0.0026 26.3 4.8 45 109-153 109-165 (219)
413 COG2874 FlaH Predicted ATPases 29.2 4.4E+02 0.0096 24.3 8.7 37 17-53 36-73 (235)
414 TIGR00853 pts-lac PTS system, 29.2 1.4E+02 0.003 23.3 5.0 40 8-47 2-41 (95)
415 PRK09219 xanthine phosphoribos 29.1 1.3E+02 0.0029 26.9 5.5 30 121-150 49-80 (189)
416 cd00672 CysRS_core catalytic c 28.9 1.2E+02 0.0027 27.7 5.4 30 18-47 34-66 (213)
417 PRK09620 hypothetical protein; 28.7 79 0.0017 29.3 4.2 38 10-47 4-53 (229)
418 PRK08266 hypothetical protein; 28.7 2.5E+02 0.0055 29.7 8.6 25 366-390 71-101 (542)
419 PRK13232 nifH nitrogenase redu 28.6 87 0.0019 29.7 4.6 36 9-44 1-36 (273)
420 TIGR02201 heptsyl_trn_III lipo 28.4 2.5E+02 0.0055 27.5 8.1 27 123-151 261-287 (344)
421 PF06564 YhjQ: YhjQ protein; 28.4 1.1E+02 0.0023 28.8 4.9 38 9-46 1-39 (243)
422 PRK14478 nitrogenase molybdenu 28.3 4.2E+02 0.0092 27.6 9.9 89 8-147 323-415 (475)
423 PRK06835 DNA replication prote 28.3 90 0.002 30.7 4.7 44 10-53 184-227 (329)
424 PF06506 PrpR_N: Propionate ca 28.2 87 0.0019 27.6 4.2 45 107-156 112-156 (176)
425 PRK05802 hypothetical protein; 28.2 1.1E+02 0.0024 29.9 5.3 38 10-49 173-210 (320)
426 PRK11914 diacylglycerol kinase 28.1 2.2E+02 0.0047 27.6 7.4 28 362-391 65-96 (306)
427 TIGR00379 cobB cobyrinic acid 28.1 4.2E+02 0.0092 27.3 9.8 34 12-45 2-36 (449)
428 COG0716 FldA Flavodoxins [Ener 28.0 1.1E+02 0.0025 26.0 4.8 44 9-52 1-45 (151)
429 COG2099 CobK Precorrin-6x redu 27.9 1.7E+02 0.0036 27.6 6.0 106 26-150 117-229 (257)
430 COG3660 Predicted nucleoside-d 27.8 5.4E+02 0.012 24.6 18.3 37 351-389 234-271 (329)
431 PRK06457 pyruvate dehydrogenas 27.8 1.7E+02 0.0036 31.1 7.0 27 361-389 64-96 (549)
432 PRK11780 isoprenoid biosynthes 27.7 1.3E+02 0.0028 27.6 5.3 39 9-47 1-43 (217)
433 cd00764 Eukaryotic_PFK Phospho 27.7 1.7E+02 0.0036 32.5 6.9 36 359-394 474-519 (762)
434 PRK12439 NAD(P)H-dependent gly 27.7 72 0.0016 31.6 3.9 43 6-53 4-46 (341)
435 cd02072 Glm_B12_BD B12 binding 27.7 1.1E+02 0.0025 25.4 4.5 42 11-52 1-42 (128)
436 PRK05858 hypothetical protein; 27.4 3E+02 0.0065 29.1 8.8 24 367-390 71-100 (542)
437 COG2086 FixA Electron transfer 27.2 5.4E+02 0.012 24.4 10.1 100 21-151 33-146 (260)
438 COG2120 Uncharacterized protei 27.1 1.2E+02 0.0025 28.4 5.0 42 5-46 6-47 (237)
439 COG0409 HypD Hydrogenase matur 27.0 2.3E+02 0.005 27.7 6.9 71 367-461 199-269 (364)
440 PRK06703 flavodoxin; Provision 26.9 1.1E+02 0.0023 26.0 4.5 39 9-47 1-40 (151)
441 CHL00175 minD septum-site dete 26.9 1.2E+02 0.0026 28.8 5.3 41 7-47 12-54 (281)
442 PRK08978 acetolactate synthase 26.8 1.4E+02 0.003 31.7 6.1 28 361-390 63-96 (548)
443 COG0771 MurD UDP-N-acetylmuram 26.8 1E+02 0.0022 31.8 4.8 36 9-49 7-42 (448)
444 PRK04940 hypothetical protein; 26.7 1.7E+02 0.0036 26.1 5.6 31 122-152 60-91 (180)
445 PF05368 NmrA: NmrA-like famil 26.7 4.6E+02 0.0099 23.8 9.0 89 18-151 5-102 (233)
446 KOG1111 N-acetylglucosaminyltr 26.6 6.6E+02 0.014 25.2 11.5 84 298-389 209-301 (426)
447 PRK07819 3-hydroxybutyryl-CoA 26.6 77 0.0017 30.5 3.8 37 7-48 3-39 (286)
448 PRK09590 celB cellobiose phosp 26.5 1.5E+02 0.0031 23.8 4.8 39 9-47 1-39 (104)
449 PRK13059 putative lipid kinase 26.5 2.3E+02 0.0049 27.3 7.1 29 362-392 57-91 (295)
450 TIGR00355 purH phosphoribosyla 26.5 2.1E+02 0.0046 29.9 7.0 30 24-58 11-40 (511)
451 PF02571 CbiJ: Precorrin-6x re 26.4 2.4E+02 0.0051 26.6 6.9 105 24-150 116-226 (249)
452 PRK10117 trehalose-6-phosphate 26.4 2.5E+02 0.0055 29.2 7.7 120 351-478 338-471 (474)
453 KOG3062 RNA polymerase II elon 26.4 1.3E+02 0.0029 27.8 4.9 38 9-46 1-39 (281)
454 PRK08979 acetolactate synthase 26.2 4.1E+02 0.0089 28.4 9.6 27 364-390 68-100 (572)
455 COG3349 Uncharacterized conser 26.2 70 0.0015 33.2 3.5 33 10-47 1-33 (485)
456 PRK08939 primosomal protein Dn 26.1 1.1E+02 0.0023 29.9 4.7 44 10-53 157-200 (306)
457 PRK07523 gluconate 5-dehydroge 26.1 1.3E+02 0.0028 27.8 5.3 43 1-46 1-43 (255)
458 COG3563 KpsC Capsule polysacch 25.8 2.9E+02 0.0063 28.6 7.6 85 298-391 165-252 (671)
459 PRK10427 putative PTS system f 25.8 1.5E+02 0.0032 24.2 4.7 39 9-47 2-43 (114)
460 PF05014 Nuc_deoxyrib_tr: Nucl 25.5 1.2E+02 0.0026 24.3 4.3 37 356-392 56-98 (113)
461 cd01983 Fer4_NifH The Fer4_Nif 25.5 1.5E+02 0.0033 22.0 4.8 33 12-44 2-34 (99)
462 COG0801 FolK 7,8-dihydro-6-hyd 25.5 1.4E+02 0.003 26.0 4.7 35 286-320 3-37 (160)
463 PRK07064 hypothetical protein; 25.3 4.4E+02 0.0095 27.9 9.6 26 365-390 68-99 (544)
464 TIGR00745 apbA_panE 2-dehydrop 25.3 78 0.0017 30.2 3.6 26 28-53 5-30 (293)
465 PRK07773 replicative DNA helic 25.3 3.3E+02 0.0072 30.9 9.0 43 11-53 219-262 (886)
466 PF13450 NAD_binding_8: NAD(P) 25.3 84 0.0018 22.7 3.0 21 27-47 9-29 (68)
467 PLN02948 phosphoribosylaminoim 25.2 5.4E+02 0.012 27.6 10.2 135 282-444 408-562 (577)
468 PRK10964 ADP-heptose:LPS hepto 25.2 3.9E+02 0.0085 25.8 8.7 27 123-151 254-280 (322)
469 PF08433 KTI12: Chromatin asso 25.2 6E+02 0.013 24.2 9.6 103 10-156 2-110 (270)
470 COG0205 PfkA 6-phosphofructoki 25.1 3.3E+02 0.0071 27.1 7.8 50 271-323 55-104 (347)
471 PRK07282 acetolactate synthase 25.1 3.5E+02 0.0076 28.8 8.9 26 365-390 75-106 (566)
472 PF06180 CbiK: Cobalt chelatas 24.9 1.2E+02 0.0025 28.9 4.6 39 285-323 2-43 (262)
473 PRK07524 hypothetical protein; 24.9 2.6E+02 0.0056 29.5 7.8 23 367-389 68-96 (535)
474 PRK12474 hypothetical protein; 24.8 4.1E+02 0.0089 27.9 9.2 24 367-390 72-101 (518)
475 PRK03094 hypothetical protein; 24.8 66 0.0014 24.4 2.3 21 26-46 10-30 (80)
476 cd07025 Peptidase_S66 LD-Carbo 24.6 1.3E+02 0.0027 28.9 4.9 28 296-323 45-72 (282)
477 TIGR01133 murG undecaprenyldip 24.5 3.8E+02 0.0083 25.9 8.6 34 287-321 3-36 (348)
478 PF02558 ApbA: Ketopantoate re 24.5 80 0.0017 26.6 3.2 26 28-53 12-37 (151)
479 PF00070 Pyr_redox: Pyridine n 24.4 1.1E+02 0.0023 22.7 3.5 22 26-47 11-32 (80)
480 PRK01372 ddl D-alanine--D-alan 24.3 1.3E+02 0.0028 28.9 5.0 40 8-47 3-46 (304)
481 PRK04761 ppnK inorganic polyph 24.3 56 0.0012 30.7 2.3 49 362-420 26-81 (246)
482 TIGR00064 ftsY signal recognit 24.2 1.7E+02 0.0036 28.0 5.6 41 9-49 72-112 (272)
483 COG0665 DadA Glycine/D-amino a 24.2 96 0.0021 30.8 4.2 38 8-50 3-40 (387)
484 PF09334 tRNA-synt_1g: tRNA sy 24.1 61 0.0013 32.8 2.7 29 19-47 15-46 (391)
485 PF05728 UPF0227: Uncharacteri 24.0 1.7E+02 0.0036 26.2 5.2 42 109-153 49-91 (187)
486 PF05225 HTH_psq: helix-turn-h 23.9 1.2E+02 0.0025 20.0 3.2 25 407-433 1-25 (45)
487 PLN02240 UDP-glucose 4-epimera 23.9 1.3E+02 0.0027 29.6 4.9 33 9-45 5-37 (352)
488 COG0163 UbiX 3-polyprenyl-4-hy 23.9 1.8E+02 0.0039 25.9 5.1 44 9-53 2-45 (191)
489 PRK06719 precorrin-2 dehydroge 23.9 1.4E+02 0.0031 25.7 4.7 38 10-53 14-51 (157)
490 PRK11064 wecC UDP-N-acetyl-D-m 23.8 1.1E+02 0.0023 31.3 4.5 34 9-47 3-36 (415)
491 COG4635 HemG Flavodoxin [Energ 23.8 1.4E+02 0.003 26.0 4.3 39 10-48 1-40 (175)
492 PRK14620 NAD(P)H-dependent gly 23.8 91 0.002 30.5 3.9 32 10-46 1-32 (326)
493 PF01380 SIS: SIS domain SIS d 23.7 2E+02 0.0043 23.2 5.5 35 19-53 62-96 (131)
494 PF03721 UDPG_MGDP_dh_N: UDP-g 23.7 1.2E+02 0.0026 27.0 4.3 33 10-47 1-33 (185)
495 PRK13337 putative lipid kinase 23.7 2.8E+02 0.006 26.8 7.2 27 366-392 60-92 (304)
496 cd03818 GT1_ExpC_like This fam 23.7 3.7E+02 0.008 26.8 8.4 26 298-323 9-34 (396)
497 PRK05246 glutathione synthetas 23.6 99 0.0021 30.2 4.0 43 9-51 1-46 (316)
498 PRK13057 putative lipid kinase 23.6 2.9E+02 0.0062 26.4 7.2 31 360-392 49-83 (287)
499 cd06559 Endonuclease_V Endonuc 23.6 78 0.0017 28.9 3.0 39 109-150 83-128 (208)
500 TIGR00877 purD phosphoribosyla 23.4 5.1E+02 0.011 26.2 9.5 37 10-51 1-37 (423)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2e-62 Score=497.00 Aligned_cols=429 Identities=30% Similarity=0.527 Sum_probs=334.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCC
Q 011724 7 KPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPL 86 (478)
Q Consensus 7 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 86 (478)
+.+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+..... .. ..+|+|..+|+++|+
T Consensus 5 ~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~---~~-------------~~~i~~~~ip~glp~ 68 (451)
T PLN02410 5 PARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPS---DD-------------FTDFQFVTIPESLPE 68 (451)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccc---cC-------------CCCeEEEeCCCCCCc
Confidence 45689999999999999999999999999999999999987642110 11 126999999988876
Q ss_pred C-CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhc-cCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhhh
Q 011724 87 N-FDRSLNHDQFMECLLHVFSAHVDELVGNLIQ-LNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMD 164 (478)
Q Consensus 87 ~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 164 (478)
+ .+. .....++..+.+.+...++++++.+.. .+.++++||+|.+..|+..+|+++|||++.++++.++.+..+.+++
T Consensus 69 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~ 147 (451)
T PLN02410 69 SDFKN-LGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFD 147 (451)
T ss_pred ccccc-cCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHH
Confidence 3 222 233456665556677778888877531 2245799999999999999999999999999999998887776654
Q ss_pred hhhhcCC-CCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHH
Q 011724 165 LLRSHGH-FASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALH 243 (478)
Q Consensus 165 ~~~~~~~-~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~ 243 (478)
.+...+. .|......+....+|+++.+..++++..... ........+... ....+++++++|||++||+..+++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~--~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~ 224 (451)
T PLN02410 148 KLYANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWA--SLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQ 224 (451)
T ss_pred HHHhccCCCCccccccCccccCCCCCCCChHHCcchhcC--CcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHH
Confidence 4433221 2322110111225888877766666643221 112222222222 23467899999999999999999997
Q ss_pred hcC-C-ccccccCCCCCCCCCCCCCCCC-ChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEE
Q 011724 244 QKQ-P-TYAIGPIFPAGFTKSLVPTSLW-SESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVL 320 (478)
Q Consensus 244 ~~~-p-~~~vGp~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 320 (478)
... + +++|||+....... .+++ +..++.+||++++++++|||||||......+.+.+++.+|+.++.+|||++
T Consensus 225 ~~~~~~v~~vGpl~~~~~~~----~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~ 300 (451)
T PLN02410 225 QQLQIPVYPIGPLHLVASAP----TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVI 300 (451)
T ss_pred hccCCCEEEecccccccCCC----ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 754 4 99999997542211 1232 134689999999889999999999999999999999999999999999999
Q ss_pred CCCCCC-CCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHH
Q 011724 321 RPDIVS-SDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNR 399 (478)
Q Consensus 321 ~~~~~~-~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na 399 (478)
...... .+..+.+|++|.++ .++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 301 r~~~~~~~~~~~~lp~~f~er--~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na 378 (451)
T PLN02410 301 RPGSVRGSEWIESLPKEFSKI--ISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNA 378 (451)
T ss_pred ccCcccccchhhcCChhHHHh--ccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHH
Confidence 733111 11123478999998 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011724 400 KLVKS----------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQF 461 (478)
Q Consensus 400 ~rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~ 461 (478)
+++++ .+++++|+++|+++|.+++.++||+|++++++++++|+.+||||+.++++|++.+..
T Consensus 379 ~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 379 RYLECVWKIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99875 589999999999999855467899999999999999999999999999999998864
No 2
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5e-62 Score=495.41 Aligned_cols=423 Identities=27% Similarity=0.510 Sum_probs=331.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFD 89 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 89 (478)
.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+. .. ....++|+|+.+|++.+++.
T Consensus 7 ~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~---~~----------~~~~~~i~~v~lp~g~~~~~- 72 (448)
T PLN02562 7 PKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRIS---AT----------LDPKLGITFMSISDGQDDDP- 72 (448)
T ss_pred cEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhh---hc----------cCCCCCEEEEECCCCCCCCc-
Confidence 69999999999999999999999999999999999999877665 21 01112699999998765322
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhhhhhhhc
Q 011724 90 RSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLLRSH 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 169 (478)
..++..++..+...+...++++++.+... .++++||+|.+..|+..+|+++|||++.++++.+..++...+.+.....
T Consensus 73 -~~~~~~l~~a~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~ 150 (448)
T PLN02562 73 -PRDFFSIENSMENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRT 150 (448)
T ss_pred -cccHHHHHHHHHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhc
Confidence 12344445555456788888888877531 2358999999999999999999999999999988877776665543333
Q ss_pred CCCCCCC-CC-CCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHH----
Q 011724 170 GHFASTD-NR-EDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALH---- 243 (478)
Q Consensus 170 ~~~p~~~-~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~---- 243 (478)
+..+... .. ..+...+|+++....++++.++.........++.+.+..+...+++++++||+++||+..++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 230 (448)
T PLN02562 151 GLISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYN 230 (448)
T ss_pred cccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhc
Confidence 2222110 00 11222578887777777776543221122335555566666778899999999999998887654
Q ss_pred -hcCC-ccccccCCCCCCCCCCCCCC-CCChhhHhHhhcCCCCCceEEEEecccc-cCCHHHHHHHHHHHhhCCCeEEEE
Q 011724 244 -QKQP-TYAIGPIFPAGFTKSLVPTS-LWSESECTQWLNTKPRGSVLYVSFGSYA-HASKNDIVEIALGLLLSEVSFVWV 319 (478)
Q Consensus 244 -~~~p-~~~vGp~~~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~ 319 (478)
+..| ++.|||+....... .+... +.++.++.+||++++++++|||||||.. ..+.+++++++.+|++.+++|||+
T Consensus 231 ~~~~~~v~~iGpl~~~~~~~-~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~ 309 (448)
T PLN02562 231 NGQNPQILQIGPLHNQEATT-ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWV 309 (448)
T ss_pred cccCCCEEEecCcccccccc-cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 3346 99999998643211 00011 2124567899999988899999999986 678999999999999999999999
Q ss_pred ECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHH
Q 011724 320 LRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNR 399 (478)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na 399 (478)
+... ..+.+|++|.++ .++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 310 ~~~~-----~~~~l~~~~~~~--~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na 382 (448)
T PLN02562 310 LNPV-----WREGLPPGYVER--VSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNC 382 (448)
T ss_pred EcCC-----chhhCCHHHHHH--hccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHH
Confidence 8643 112478888887 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc---------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011724 400 KLVKS---------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQ 460 (478)
Q Consensus 400 ~rv~~---------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~ 460 (478)
+++++ .++.++|.++|+++|. +++||+||++++++++++ .+||||++++++|++++.
T Consensus 383 ~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~---~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 383 AYIVDVWKIGVRISGFGQKEVEEGLRKVME---DSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHHHHhCceeEeCCCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 99975 6799999999999998 889999999999999987 668999999999999863
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.7e-62 Score=492.82 Aligned_cols=419 Identities=31% Similarity=0.575 Sum_probs=332.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCC
Q 011724 7 KPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPL 86 (478)
Q Consensus 7 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 86 (478)
+++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+. .. ..++|+|..+|+++|+
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~---~~------------~~~~i~~~~ipdglp~ 67 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIH---LD------------PSSPISIATISDGYDQ 67 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcc---cC------------CCCCEEEEEcCCCCCC
Confidence 45589999999999999999999999999999999999998765553 21 1126999999998876
Q ss_pred C-CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCc-cEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhhh
Q 011724 87 N-FDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEM-NCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMD 164 (478)
Q Consensus 87 ~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p-D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 164 (478)
+ .+...+...++..+.+.+...++++++.+... .+| ++||+|.+..|+..+|+++|||++.++++.++.+..+++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~- 145 (449)
T PLN02173 68 GGFSSAGSVPEYLQNFKTFGSKTVADIIRKHQST-DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS- 145 (449)
T ss_pred cccccccCHHHHHHHHHHhhhHHHHHHHHHhhcc-CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-
Confidence 3 23334455677776667888888888876422 235 9999999999999999999999999999887766554332
Q ss_pred hhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHh
Q 011724 165 LLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQ 244 (478)
Q Consensus 165 ~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~ 244 (478)
... .+.. . ..+|+++....++++.++..........+.+...++...+++++++||+++||++.+++.+.
T Consensus 146 ~~~-~~~~--------~-~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 215 (449)
T PLN02173 146 YIN-NGSL--------T-LPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK 215 (449)
T ss_pred Hhc-cCCc--------c-CCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh
Confidence 111 1111 1 13678877777888765542222233455555556667889999999999999999999876
Q ss_pred cCCccccccCCCCCC----CCCCCC--CCCC--C-hhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCe
Q 011724 245 KQPTYAIGPIFPAGF----TKSLVP--TSLW--S-ESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVS 315 (478)
Q Consensus 245 ~~p~~~vGp~~~~~~----~~~~~~--~~l~--~-~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~ 315 (478)
..|++.|||+++... ....+. ..+| + ++++.+||+.++++++|||||||....+.+++.+++.+| .+.+
T Consensus 216 ~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~ 293 (449)
T PLN02173 216 VCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFS 293 (449)
T ss_pred cCCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCC
Confidence 445999999974210 000000 1222 1 346999999999999999999999999999999999999 6778
Q ss_pred EEEEECCCCCCCCccCCCChhhhhhhcc-CCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccc
Q 011724 316 FVWVLRPDIVSSDETDFLPVGFEEKIKI-SGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTD 394 (478)
Q Consensus 316 ~i~~~~~~~~~~~~~~~l~~~~~~~~~~-~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~D 394 (478)
|+|++... ..+.+|++|.++ . ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 294 flWvvr~~-----~~~~lp~~~~~~--~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~D 366 (449)
T PLN02173 294 YLWVVRAS-----EESKLPPGFLET--VDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTD 366 (449)
T ss_pred EEEEEecc-----chhcccchHHHh--hcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhc
Confidence 99999743 123477888776 5 578999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhc------c---------cCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011724 395 QFTNRKLVKS------S---------ITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDV 459 (478)
Q Consensus 395 Q~~na~rv~~------~---------~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~ 459 (478)
|+.||+++++ . ++.++|.++|+++|.+++..++|+||++++++.++|+.+||||..++++|++++
T Consensus 367 Q~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~ 446 (449)
T PLN02173 367 QPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKI 446 (449)
T ss_pred chHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9999999986 1 488999999999998655688999999999999999999999999999999998
Q ss_pred Hh
Q 011724 460 QF 461 (478)
Q Consensus 460 ~~ 461 (478)
..
T Consensus 447 ~~ 448 (449)
T PLN02173 447 QI 448 (449)
T ss_pred cc
Confidence 64
No 4
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.2e-61 Score=492.97 Aligned_cols=450 Identities=30% Similarity=0.533 Sum_probs=345.1
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEc
Q 011724 1 MENNHKKPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATV 80 (478)
Q Consensus 1 ~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (478)
|+-+..+ .||+++|+|++||++|++.||+.|+.+|..|||++++.+...+. ....-.|.. ........++|..+
T Consensus 1 ~~~~~~~--~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~---~a~~~~~~~-~~~~~~~~i~~~~~ 74 (480)
T PLN02555 1 MESESSL--VHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMR---QANKIQDGV-LKPVGDGFIRFEFF 74 (480)
T ss_pred CCCCCCC--CEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhh---ccccccccc-cccCCCCeEEEeeC
Confidence 5555344 89999999999999999999999999999999999998666654 210000000 00000113777778
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHH
Q 011724 81 SDGLPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLY 160 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 160 (478)
|+++|++.+...++..++..+...+...++++++.+.....++++||+|.+..|+..+|+++|||.+.++++.++.+..+
T Consensus 75 pdglp~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~ 154 (480)
T PLN02555 75 EDGWAEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAY 154 (480)
T ss_pred CCCCCCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHH
Confidence 88877654333345556666655677888888887643223459999999999999999999999999999999988877
Q ss_pred HhhhhhhhcCCCCCCCCC-CCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHH
Q 011724 161 YHMDLLRSHGHFASTDNR-EDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETI 239 (478)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~ 239 (478)
++++ .+..+..... ....-.+||++.+..++++.++..........+.+.+.++...+++++++||+++||+..+
T Consensus 155 ~~~~----~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~ 230 (480)
T PLN02555 155 YHYY----HGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEII 230 (480)
T ss_pred HHHh----hcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHH
Confidence 6653 1212221110 1111248998877888888755422223344555556666677889999999999999999
Q ss_pred HHHHhcCCccccccCCCCCCCC-CCCCCCCC-ChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEE
Q 011724 240 SALHQKQPTYAIGPIFPAGFTK-SLVPTSLW-SESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFV 317 (478)
Q Consensus 240 ~~~~~~~p~~~vGp~~~~~~~~-~~~~~~l~-~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i 317 (478)
+.++...|++.|||++...... ......++ .++++.+||+.++++++|||||||......+.+.+++.+|+..+++||
T Consensus 231 ~~l~~~~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~fl 310 (480)
T PLN02555 231 DYMSKLCPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFL 310 (480)
T ss_pred HHHhhCCCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEE
Confidence 9887655689999997532110 00001112 246799999999888999999999999999999999999999999999
Q ss_pred EEECCCCCC-CCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchh
Q 011724 318 WVLRPDIVS-SDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQF 396 (478)
Q Consensus 318 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~ 396 (478)
|++...... ....+.+|++|.++ .++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 311 W~~~~~~~~~~~~~~~lp~~~~~~--~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~ 388 (480)
T PLN02555 311 WVMRPPHKDSGVEPHVLPEEFLEK--AGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQV 388 (480)
T ss_pred EEEecCcccccchhhcCChhhhhh--cCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccH
Confidence 998632100 01123578888877 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc------c----------cCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011724 397 TNRKLVKS------S----------ITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQ 460 (478)
Q Consensus 397 ~na~rv~~------~----------~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~ 460 (478)
.||+++++ . +++++|.++|+++|.+++..++|+||++|+++.++|+.+||||+.++++||+++.
T Consensus 389 ~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~ 468 (480)
T PLN02555 389 TDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLV 468 (480)
T ss_pred HHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999877 2 5789999999999986556889999999999999999999999999999999998
Q ss_pred hc
Q 011724 461 FL 462 (478)
Q Consensus 461 ~~ 462 (478)
.+
T Consensus 469 ~~ 470 (480)
T PLN02555 469 RK 470 (480)
T ss_pred hc
Confidence 75
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.8e-61 Score=489.05 Aligned_cols=444 Identities=25% Similarity=0.386 Sum_probs=331.7
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEc
Q 011724 1 MENNHKKPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATV 80 (478)
Q Consensus 1 ~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (478)
|.-++...+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+. .. . ...+++++..+
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~---~~--------~--~~~~~i~~~~l 67 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLN---PL--------L--SKHPSIETLVL 67 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHh---hh--------c--ccCCCeeEEeC
Confidence 44344555699999999999999999999999999999999999999887776 32 0 11125777665
Q ss_pred C----CCCCCCCCCCCC----HHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecc
Q 011724 81 S----DGLPLNFDRSLN----HDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTE 152 (478)
Q Consensus 81 ~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~ 152 (478)
| +++|++.+...+ ....+......+...+.++++... .+|++||+|.+..|+..+|+++|||++.++++
T Consensus 68 p~P~~~~lPdG~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~---~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~ 144 (477)
T PLN02863 68 PFPSHPSIPSGVENVKDLPPSGFPLMIHALGELYAPLLSWFRSHP---SPPVAIISDMFLGWTQNLACQLGIRRFVFSPS 144 (477)
T ss_pred CCCCcCCCCCCCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCC---CCCeEEEEcCchHhHHHHHHHcCCCEEEEecc
Confidence 4 244544433222 112233333444555555655532 46899999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChh
Q 011724 153 PALVLTLYYHMDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVH 232 (478)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (478)
.++.++.++++.........+........+..+||++.+..++++.++..........+.+.+.+.....++++++||++
T Consensus 145 sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~ 224 (477)
T PLN02863 145 GAMALSIMYSLWREMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFT 224 (477)
T ss_pred CHHHHHHHHHHhhcccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHH
Confidence 99988887765421100000100011112235888888888888876553222233444444545555677889999999
Q ss_pred hhcHHHHHHHHhcC--C-ccccccCCCCCCCC---CCCCCCCC-ChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHH
Q 011724 233 ELESETISALHQKQ--P-TYAIGPIFPAGFTK---SLVPTSLW-SESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEI 305 (478)
Q Consensus 233 ~le~~~~~~~~~~~--p-~~~vGp~~~~~~~~---~~~~~~l~-~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~ 305 (478)
+||+..+++.+..+ + ++.|||+++..... ..+..+.+ .++++.+||+.++++++|||||||......+.+.++
T Consensus 225 eLE~~~~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~el 304 (477)
T PLN02863 225 ELEGIYLEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEAL 304 (477)
T ss_pred HHHHHHHHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHH
Confidence 99999999998753 5 99999997533110 00001111 256899999999889999999999999999999999
Q ss_pred HHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcc
Q 011724 306 ALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVP 385 (478)
Q Consensus 306 ~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP 385 (478)
+.+|+..+.+|||+++...........+|++|.++. .+.++++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 305 a~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~-~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP 383 (477)
T PLN02863 305 ASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRV-AGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVP 383 (477)
T ss_pred HHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHh-ccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCC
Confidence 999999999999999743111111234778887762 1346677799999999999999999999999999999999999
Q ss_pred eeccCcccchhHHHHHhhc--------------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 011724 386 LLCFPLLTDQFTNRKLVKS--------------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKN 451 (478)
Q Consensus 386 ~l~~P~~~DQ~~na~rv~~--------------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~ 451 (478)
||++|+++||+.||+++++ ..+.+++.++|+++|. ++++||+||++++++.++|+.+||||+.+
T Consensus 384 ~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~--~~~~~r~~a~~l~e~a~~Av~~gGSS~~~ 461 (477)
T PLN02863 384 MLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVS--ENQVERERAKELRRAALDAIKERGSSVKD 461 (477)
T ss_pred EEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 9999999999999999764 2478999999999993 17899999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 011724 452 FNQFINDVQFLT 463 (478)
Q Consensus 452 ~~~~i~~~~~~~ 463 (478)
+++|++++...+
T Consensus 462 l~~~v~~i~~~~ 473 (477)
T PLN02863 462 LDGFVKHVVELG 473 (477)
T ss_pred HHHHHHHHHHhc
Confidence 999999998654
No 6
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.6e-60 Score=485.26 Aligned_cols=426 Identities=36% Similarity=0.628 Sum_probs=336.5
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCC
Q 011724 6 KKPKPHAIAICYPLQGHVIPFVNLALKLASS--GFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDG 83 (478)
Q Consensus 6 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (478)
.++..||+++|+|++||++|++.||++|+.+ ||+|||++++.+...++ .. . ..++++|+.+|++
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~---~~--------~---~~~gi~fv~lp~~ 72 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIG---SD--------P---KPDNIRFATIPNV 72 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhh---cc--------C---CCCCEEEEECCCC
Confidence 4567899999999999999999999999999 99999999999988887 43 1 1137999999987
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhh
Q 011724 84 LPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHM 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 163 (478)
.+++.....+...++..+.+.+...++++++.+. .++|+||+|.++.|+..+|+++|||++.+++.++..++.+.++
T Consensus 73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 149 (459)
T PLN02448 73 IPSELVRAADFPGFLEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHF 149 (459)
T ss_pred CCCccccccCHHHHHHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHh
Confidence 6655433345556666655567777888887764 4689999999999999999999999999999998877776666
Q ss_pred hhhhhcCCCCCCCC--CCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHH
Q 011724 164 DLLRSHGHFASTDN--REDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISA 241 (478)
Q Consensus 164 ~~~~~~~~~p~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~ 241 (478)
+.....+..|.... .+.....+|+++.....++..+.... .....+.+...++...+++.+++||+++||+..+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 227 (459)
T PLN02448 150 DLLPQNGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDA 227 (459)
T ss_pred hhhhhccCCCCccccccCCccccCCCCCCCChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHH
Confidence 54333222232211 01223357888777777777654422 233455555556666778899999999999999999
Q ss_pred HHhcC-C-ccccccCCCCCCCC-CCCCCCCC-ChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEE
Q 011724 242 LHQKQ-P-TYAIGPIFPAGFTK-SLVPTSLW-SESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFV 317 (478)
Q Consensus 242 ~~~~~-p-~~~vGp~~~~~~~~-~~~~~~l~-~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i 317 (478)
.+... + ++.|||+....... .....+.. .+.++.+|++.++++++|||||||......+++++++.+|+..+.+||
T Consensus 228 l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~l 307 (459)
T PLN02448 228 LKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFL 307 (459)
T ss_pred HHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEE
Confidence 87754 3 99999997632110 00000110 124799999999889999999999998889999999999999999999
Q ss_pred EEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhH
Q 011724 318 WVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFT 397 (478)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~ 397 (478)
|++... ..++.+. .++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.
T Consensus 308 w~~~~~----------~~~~~~~--~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~ 375 (459)
T PLN02448 308 WVARGE----------ASRLKEI--CGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPL 375 (459)
T ss_pred EEEcCc----------hhhHhHh--ccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchh
Confidence 987533 1245444 4578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc----------------ccCHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011724 398 NRKLVKS----------------SITKEEVSEKINRLMSG--KSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDV 459 (478)
Q Consensus 398 na~rv~~----------------~~t~~~l~~~v~~ll~~--~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~ 459 (478)
||+++++ .+++++|+++|+++|.+ ++.++||+||+++++++++|+.+||||++++++|++++
T Consensus 376 na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~ 455 (459)
T PLN02448 376 NSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDI 455 (459)
T ss_pred hHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9999976 15889999999999974 23568999999999999999999999999999999999
Q ss_pred Hhc
Q 011724 460 QFL 462 (478)
Q Consensus 460 ~~~ 462 (478)
++.
T Consensus 456 ~~~ 458 (459)
T PLN02448 456 SQG 458 (459)
T ss_pred hcc
Confidence 863
No 7
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=7.5e-60 Score=477.76 Aligned_cols=434 Identities=26% Similarity=0.435 Sum_probs=325.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCchh-hhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSG--FTITFVNTHSIH-HQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLP 85 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 85 (478)
+.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+...+.. .....++|+|..+|+...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~---------~~~~~~~i~~~~lp~~~~ 73 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKS---------IASSQPFVRFIDVPELEE 73 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhh---------ccCCCCCeEEEEeCCCCC
Confidence 36999999999999999999999999998 999999998765 222210010 001112699999996432
Q ss_pred -CCCCCCCCHHHHHHHHHHHhhH----HHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHH
Q 011724 86 -LNFDRSLNHDQFMECLLHVFSA----HVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLY 160 (478)
Q Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~----~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 160 (478)
+......+....+..+...+.. .+.++++.....+.++++||+|.+..|+..+|+++|||++.++++.+..++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~ 153 (468)
T PLN02207 74 KPTLGGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMM 153 (468)
T ss_pred CCccccccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 1101122344444334444433 34444443321112349999999999999999999999999999998887777
Q ss_pred HhhhhhhhcC-CCCCCCCCCCccccCCCC-CCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHH
Q 011724 161 YHMDLLRSHG-HFASTDNREDTIDYIPGV-RAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESET 238 (478)
Q Consensus 161 ~~~~~~~~~~-~~p~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~ 238 (478)
.+.+...... ..+...+ + ..-.+||+ +.....+++.++.... . +..+........+++.+++||+++||++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~-~-~~~~vPgl~~~l~~~dlp~~~~~~~---~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~ 227 (468)
T PLN02207 154 QYLADRHSKDTSVFVRNS-E-EMLSIPGFVNPVPANVLPSALFVED---G-YDAYVKLAILFTKANGILVNSSFDIEPYS 227 (468)
T ss_pred HHhhhccccccccCcCCC-C-CeEECCCCCCCCChHHCcchhcCCc---c-HHHHHHHHHhcccCCEEEEEchHHHhHHH
Confidence 6654332111 1111111 1 22258988 5678888876553211 1 33333444556789999999999999998
Q ss_pred HHHHHh--cCC-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCe
Q 011724 239 ISALHQ--KQP-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVS 315 (478)
Q Consensus 239 ~~~~~~--~~p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~ 315 (478)
++..+. ..| ++.|||+......... ....++++++.+||+.++++++|||||||....+.+++++++.+|+.++++
T Consensus 228 ~~~~~~~~~~p~v~~VGPl~~~~~~~~~-~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~ 306 (468)
T PLN02207 228 VNHFLDEQNYPSVYAVGPIFDLKAQPHP-EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYR 306 (468)
T ss_pred HHHHHhccCCCcEEEecCCcccccCCCC-ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCc
Confidence 888854 457 9999999863321100 001122468999999998889999999999999999999999999999999
Q ss_pred EEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccch
Q 011724 316 FVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQ 395 (478)
Q Consensus 316 ~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ 395 (478)
|||++..... ...+.+|++|.++ .++|+++++|+||.+||+|+++|+|||||||||++||+++|||||++|+++||
T Consensus 307 flW~~r~~~~--~~~~~lp~~f~er--~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ 382 (468)
T PLN02207 307 FLWSLRTEEV--TNDDLLPEGFLDR--VSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQ 382 (468)
T ss_pred EEEEEeCCCc--cccccCCHHHHhh--cCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccc
Confidence 9999974310 1123588899888 88999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhc------------------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011724 396 FTNRKLVKS------------------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFIN 457 (478)
Q Consensus 396 ~~na~rv~~------------------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~ 457 (478)
+.||+++++ .++.++|.++|+++|.+ ++++||+||+++++++++|+.+||||+.++++|++
T Consensus 383 ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~ 461 (468)
T PLN02207 383 QLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIH 461 (468)
T ss_pred hhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999998765 14889999999999963 37899999999999999999999999999999999
Q ss_pred HHHhcC
Q 011724 458 DVQFLT 463 (478)
Q Consensus 458 ~~~~~~ 463 (478)
++...+
T Consensus 462 ~~~~~~ 467 (468)
T PLN02207 462 DVIGIK 467 (468)
T ss_pred HHHhcc
Confidence 998654
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-59 Score=478.70 Aligned_cols=424 Identities=26% Similarity=0.499 Sum_probs=323.6
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCC
Q 011724 6 KKPKPHAIAICYPLQGHVIPFVNLALK--LASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDG 83 (478)
Q Consensus 6 ~~~~~~il~~~~~~~GH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (478)
.....||+++|+|++||++|++.||++ |++||++|||++++.+...++ .. +. ....+++..+|++
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~---~~--------~~--~~~~~~~~~~~~g 71 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLS---TV--------EK--PRRPVDLVFFSDG 71 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhc---cc--------cC--CCCceEEEECCCC
Confidence 344589999999999999999999999 558999999999999877665 32 11 1125788878877
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhh
Q 011724 84 LPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHM 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 163 (478)
++++.. .+...++..+.+.+...++++++. .+||+||+|.+..|+..+|+++|||.+.+++..+..+....+.
T Consensus 72 lp~~~~--~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~ 144 (456)
T PLN02210 72 LPKDDP--RAPETLLKSLNKVGAKNLSKIIEE-----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRY 144 (456)
T ss_pred CCCCcc--cCHHHHHHHHHHhhhHHHHHHHhc-----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhh
Confidence 776542 234455665555566666666655 3599999999999999999999999999999988877776654
Q ss_pred hhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHH-HHhhhhccccEEEecChhhhcHHHHHHH
Q 011724 164 DLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQ-KAFEDVKRVDFILCNTVHELESETISAL 242 (478)
Q Consensus 164 ~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~le~~~~~~~ 242 (478)
... .+..+...+ ......+|+++.+..++++..+... .......+. ...+...+++++++||++++|++.++.+
T Consensus 145 ~~~--~~~~~~~~~-~~~~~~~Pgl~~~~~~dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l 219 (456)
T PLN02210 145 YMK--TNSFPDLED-LNQTVELPALPLLEVRDLPSFMLPS--GGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESM 219 (456)
T ss_pred hhc--cCCCCcccc-cCCeeeCCCCCCCChhhCChhhhcC--CchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHH
Confidence 321 111221110 0122247888767777777654432 122222222 2223456788999999999999999998
Q ss_pred HhcCCccccccCCCCC----CCC-CCCC--CCCC-ChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCC
Q 011724 243 HQKQPTYAIGPIFPAG----FTK-SLVP--TSLW-SESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEV 314 (478)
Q Consensus 243 ~~~~p~~~vGp~~~~~----~~~-~~~~--~~l~-~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~ 314 (478)
+...|+++|||++... ... .... ..+| .++++.+|++.++++++|||||||....+.+++++++.+|+..+.
T Consensus 220 ~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~ 299 (456)
T PLN02210 220 ADLKPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGV 299 (456)
T ss_pred hhcCCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 7643499999998521 100 0000 1122 246789999999888999999999999999999999999999999
Q ss_pred eEEEEECCCCCCCCccCCCChhhhhhhcc-CCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCccc
Q 011724 315 SFVWVLRPDIVSSDETDFLPVGFEEKIKI-SGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLT 393 (478)
Q Consensus 315 ~~i~~~~~~~~~~~~~~~l~~~~~~~~~~-~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~ 393 (478)
+|||+++... ....+..|.++ . ++++++++|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 300 ~flw~~~~~~-----~~~~~~~~~~~--~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~ 372 (456)
T PLN02210 300 PFLWVIRPKE-----KAQNVQVLQEM--VKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWT 372 (456)
T ss_pred CEEEEEeCCc-----cccchhhHHhh--ccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 9999987430 01123445554 4 47888889999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhc---------------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011724 394 DQFTNRKLVKS---------------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFIND 458 (478)
Q Consensus 394 DQ~~na~rv~~---------------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~ 458 (478)
||+.||+++++ .+++++|+++|+++|.+++..++|+||++|++..++|+.+||||+.++++|+++
T Consensus 373 DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~ 452 (456)
T PLN02210 373 DQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISD 452 (456)
T ss_pred ccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999976 168999999999999854456799999999999999999999999999999999
Q ss_pred HHh
Q 011724 459 VQF 461 (478)
Q Consensus 459 ~~~ 461 (478)
+..
T Consensus 453 ~~~ 455 (456)
T PLN02210 453 ITI 455 (456)
T ss_pred Hhc
Confidence 864
No 9
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=9.4e-60 Score=476.08 Aligned_cols=421 Identities=29% Similarity=0.532 Sum_probs=326.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCchh-hhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLAS-SGFTITFVNTHSIH-HQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLN 87 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 87 (478)
.||+++|+|++||++|++.||+.|+. +|+.|||++++.+. ..+. .. . ...++++|+.++++++++
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~---~~---------~-~~~~~i~~~~i~dglp~g 70 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMI---PN---------H-NNVENLSFLTFSDGFDDG 70 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhh---cc---------C-CCCCCEEEEEcCCCCCCc
Confidence 59999999999999999999999996 79999999998642 2111 11 0 111269999999888765
Q ss_pred CCC-CCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhhhhh
Q 011724 88 FDR-SLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLL 166 (478)
Q Consensus 88 ~~~-~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 166 (478)
... ..+...++..+...+...++++++.+...+.++++||+|.+..|+..+|+++|||++.+++..++.+..+++....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 71 VISNTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred cccccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 322 3345556666667778888888887643223459999999999999999999999999999999888777654310
Q ss_pred hhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhc--cccEEEecChhhhcHHHHHHHHh
Q 011724 167 RSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVK--RVDFILCNTVHELESETISALHQ 244 (478)
Q Consensus 167 ~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~le~~~~~~~~~ 244 (478)
. . ....+|+++.+..++++.++..........+.+....+... .++++++||+++||+..+++.+.
T Consensus 151 ~-----------~-~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 218 (455)
T PLN02152 151 N-----------N-SVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN 218 (455)
T ss_pred C-----------C-CeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc
Confidence 0 0 11248888777778888766432222223333333333332 24699999999999999998864
Q ss_pred cCCccccccCCCCCC-CCCCCCC--CCCC-hhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEE
Q 011724 245 KQPTYAIGPIFPAGF-TKSLVPT--SLWS-ESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVL 320 (478)
Q Consensus 245 ~~p~~~vGp~~~~~~-~~~~~~~--~l~~-~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 320 (478)
.|++.|||+.+... ....... .+++ +.++.+||+.++++++|||||||....+.+.+++++.+|+.++.+|||++
T Consensus 219 -~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~ 297 (455)
T PLN02152 219 -IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVI 297 (455)
T ss_pred -CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 35999999975321 0000001 1222 35799999999888999999999999999999999999999999999999
Q ss_pred CCCCCC-----CCccC--CCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCccc
Q 011724 321 RPDIVS-----SDETD--FLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLT 393 (478)
Q Consensus 321 ~~~~~~-----~~~~~--~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~ 393 (478)
...... ....+ .+|++|.++ .++|+++.+|+||.+||+|+++|+||||||+||+.||+++|||||++|+++
T Consensus 298 r~~~~~~~~~~~~~~~~~~~~~~f~e~--~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 375 (455)
T PLN02152 298 TDKLNREAKIEGEEETEIEKIAGFRHE--LEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWS 375 (455)
T ss_pred ecCcccccccccccccccccchhHHHh--ccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 742110 00000 246788887 889999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhc--------------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011724 394 DQFTNRKLVKS--------------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDV 459 (478)
Q Consensus 394 DQ~~na~rv~~--------------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~ 459 (478)
||+.||+++++ .+++++|+++|+++|++ ++.+||+||++++++.++|..+||||+.++++||+++
T Consensus 376 DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 376 DQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred cchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999976 25899999999999972 2467999999999999999999999999999999976
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=5.6e-59 Score=472.23 Aligned_cols=420 Identities=25% Similarity=0.445 Sum_probs=323.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCC----CC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLA-SSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSD----GL 84 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~ 84 (478)
.||+++|+|++||++|++.||+.|+ ++|++|||++++.+...+. .. . ...++|++..+|. ++
T Consensus 6 pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~---~~--------~--~~~~~i~~~~lp~p~~~gl 72 (481)
T PLN02992 6 PHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQ---SK--------F--LNSTGVDIVGLPSPDISGL 72 (481)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhh---hc--------c--ccCCCceEEECCCccccCC
Confidence 6999999999999999999999998 7899999999998776653 21 0 0112588888884 33
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhhh
Q 011724 85 PLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMD 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 164 (478)
++.. .+....+..+...+...++++++++. .+|++||+|.+..|+..+|+++|||++.++++.++.++...+.+
T Consensus 73 p~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~ 146 (481)
T PLN02992 73 VDPS---AHVVTKIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYP 146 (481)
T ss_pred CCCC---ccHHHHHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhh
Confidence 3111 12222333334455677777777653 46899999999999999999999999999999988877665554
Q ss_pred hhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHh
Q 011724 165 LLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQ 244 (478)
Q Consensus 165 ~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~ 244 (478)
.+......+.... +.+ ..+|+++.+...+++..+... ....+..+........+++++++||+++||+..+++.+.
T Consensus 147 ~~~~~~~~~~~~~-~~~-~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~ 222 (481)
T PLN02992 147 TLDKDIKEEHTVQ-RKP-LAMPGCEPVRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQD 222 (481)
T ss_pred hhccccccccccC-CCC-cccCCCCccCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhh
Confidence 3222111111000 112 258888877777777533322 223444555555667789999999999999999998864
Q ss_pred c--------CCccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeE
Q 011724 245 K--------QPTYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSF 316 (478)
Q Consensus 245 ~--------~p~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~ 316 (478)
. .|++.|||++..... .. +++++.+||+.++++++|||||||...++.+.+++++.+|+.++++|
T Consensus 223 ~~~~~~~~~~~v~~VGPl~~~~~~-----~~--~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~f 295 (481)
T PLN02992 223 PKLLGRVARVPVYPIGPLCRPIQS-----SK--TDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRF 295 (481)
T ss_pred ccccccccCCceEEecCccCCcCC-----Cc--chHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCE
Confidence 2 249999999864211 11 25679999999988999999999999999999999999999999999
Q ss_pred EEEECCCCC-------C--------CCccCCCChhhhhhhccCC-CeEEeeccChHhhhhccCcceeeeccCchhhHHHH
Q 011724 317 VWVLRPDIV-------S--------SDETDFLPVGFEEKIKISG-RGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESI 380 (478)
Q Consensus 317 i~~~~~~~~-------~--------~~~~~~l~~~~~~~~~~~~-nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal 380 (478)
||++..... + +...+.+|++|.++ ..+ ++.+.+|+||.+||+|+++++|||||||||++||+
T Consensus 296 lW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR--~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal 373 (481)
T PLN02992 296 VWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSR--THDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESV 373 (481)
T ss_pred EEEEeCCcccccccccccCcccccccchhhhCCHHHHHH--hcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHH
Confidence 999953200 0 00123578888887 555 45666999999999999999999999999999999
Q ss_pred hcCcceeccCcccchhHHHHHhh-c------------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHh--cC
Q 011724 381 WCSVPLLCFPLLTDQFTNRKLVK-S------------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALS--AD 445 (478)
Q Consensus 381 ~~GvP~l~~P~~~DQ~~na~rv~-~------------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~--~g 445 (478)
++|||||++|+++||+.||++++ + .++.++|.++|+++|.+++..++|+++++++++.++|+. +|
T Consensus 374 ~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~G 453 (481)
T PLN02992 374 VGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGG 453 (481)
T ss_pred HcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999996 4 279999999999999855557899999999999999994 59
Q ss_pred CChHHHHHHHHHHHHh
Q 011724 446 GSSQKNFNQFINDVQF 461 (478)
Q Consensus 446 g~~~~~~~~~i~~~~~ 461 (478)
|||+.++++|++++..
T Consensus 454 GSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 454 GVAHESLCRVTKECQR 469 (481)
T ss_pred CchHHHHHHHHHHHHH
Confidence 9999999999999864
No 11
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.4e-59 Score=478.95 Aligned_cols=436 Identities=28% Similarity=0.426 Sum_probs=320.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCchhhhhhhhcCCCCCcchhccccC--CCCCeEEEEcCCCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSG--FTITFVNTHSIHHQITKAQSNGDEDDIFAGARK--AGLDIRYATVSDGL 84 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~ 84 (478)
++||+++|+|++||++|++.||+.|+.+| ..|||++++.+.....+. ..+. .... ..++|+++.+|++.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~-~~~~------~~~~~~~~~~i~~~~lp~~~ 74 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASS-SAYI------ASLSASSEDRLRYEVISAGD 74 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhh-hhhh------hhcccCCCCCeEEEEcCCCC
Confidence 48999999999999999999999999998 899999998764321000 0000 0001 12269999999765
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCC-ccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhh
Q 011724 85 PLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPE-MNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHM 163 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 163 (478)
++... ...+..++..+...+...+++++......+.+ .++||+|.+..|+..+|+++|||++.++++.+..++.+.++
T Consensus 75 ~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~ 153 (481)
T PLN02554 75 QPTTE-DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHV 153 (481)
T ss_pred CCccc-chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhh
Confidence 42211 11222223333333333333333322111112 38999999999999999999999999999999999888877
Q ss_pred hhhhhcCCCCCCC-CCCCccccCCCCC-CCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHH
Q 011724 164 DLLRSHGHFASTD-NREDTIDYIPGVR-AIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISA 241 (478)
Q Consensus 164 ~~~~~~~~~p~~~-~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~ 241 (478)
+.....+..+... ......-.+|+++ ++...+++..... ......+....+...+++++++||+.+||+...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~ 229 (481)
T PLN02554 154 QMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKF 229 (481)
T ss_pred hhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHH
Confidence 6543322122111 1111112478873 5666666643321 12334444555567789999999999999998888
Q ss_pred HHh---cCC-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEE
Q 011724 242 LHQ---KQP-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFV 317 (478)
Q Consensus 242 ~~~---~~p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i 317 (478)
+.. ..| ++.|||++...........+. ++++.+|++.++++++|||||||....+.+++++++.+|+..+++||
T Consensus 230 l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~--~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~fl 307 (481)
T PLN02554 230 FSGSSGDLPPVYPVGPVLHLENSGDDSKDEK--QSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFL 307 (481)
T ss_pred HHhcccCCCCEEEeCCCcccccccccccccc--chHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeE
Confidence 875 346 999999953221110000123 57899999999888999999999998999999999999999999999
Q ss_pred EEECCCCC---------CCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceec
Q 011724 318 WVLRPDIV---------SSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLC 388 (478)
Q Consensus 318 ~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~ 388 (478)
|++..... ..+..+.+|++|.++ .++|+++++|+||.+||+|+++++|||||||||+.||+++|||||+
T Consensus 308 W~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r--~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~ 385 (481)
T PLN02554 308 WSLRRASPNIMKEPPGEFTNLEEILPEGFLDR--TKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAA 385 (481)
T ss_pred EEEcCCcccccccccccccchhhhCChHHHHH--hccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEe
Confidence 99974210 001112368888888 7899999999999999999999999999999999999999999999
Q ss_pred cCcccchhHHHHH-hhc-------c--------------cCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCC
Q 011724 389 FPLLTDQFTNRKL-VKS-------S--------------ITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADG 446 (478)
Q Consensus 389 ~P~~~DQ~~na~r-v~~-------~--------------~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg 446 (478)
+|+++||+.||++ +++ . +++++|.++|+++|.+ +++||+||+++++++++|+.+||
T Consensus 386 ~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~--~~~~r~~a~~l~~~~~~av~~gG 463 (481)
T PLN02554 386 WPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQ--DSDVRKRVKEMSEKCHVALMDGG 463 (481)
T ss_pred cCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999955 544 1 5889999999999952 58999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhc
Q 011724 447 SSQKNFNQFINDVQFL 462 (478)
Q Consensus 447 ~~~~~~~~~i~~~~~~ 462 (478)
|++.++++||+++..+
T Consensus 464 ss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 464 SSHTALKKFIQDVTKN 479 (481)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999999999874
No 12
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.4e-58 Score=464.91 Aligned_cols=427 Identities=27% Similarity=0.433 Sum_probs=324.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASS-GFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLN 87 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 87 (478)
+.||+++|+|++||++|++.||+.|+.+ |..|||++++.....+... .. . ......++|++..+|....++
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~-~~-~------~~~~~~~~i~~~~lp~~~~~~ 74 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTET-EA-I------HAAAARTTCQITEIPSVDVDN 74 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccc-cc-c------ccccCCCceEEEECCCCcccc
Confidence 4699999999999999999999999987 9999999988755433100 10 0 000011259999998543222
Q ss_pred C-CCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCc-cEEEecchhHHHHHHHhhhh
Q 011724 88 F-DRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLV-NISFWTEPALVLTLYYHMDL 165 (478)
Q Consensus 88 ~-~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~ 165 (478)
. ....+....+..+...+.+.++++++.+. .+|++||+|.+..|+..+|+++||| .+.++++.++.+...++++.
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~ 151 (470)
T PLN03015 75 LVEPDATIFTKMVVKMRAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPV 151 (470)
T ss_pred CCCCCccHHHHHHHHHHhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhh
Confidence 1 11113333344445567788888888764 3689999999999999999999999 57777777766656666544
Q ss_pred hhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHhc
Q 011724 166 LRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQK 245 (478)
Q Consensus 166 ~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~ 245 (478)
........... .+.++ .+||++....++++..+... ....+..+....+...+++++++||+++||+..++..+..
T Consensus 152 ~~~~~~~~~~~-~~~~~-~vPg~p~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~ 227 (470)
T PLN03015 152 LDTVVEGEYVD-IKEPL-KIPGCKPVGPKELMETMLDR--SDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALRED 227 (470)
T ss_pred hhcccccccCC-CCCee-eCCCCCCCChHHCCHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhh
Confidence 32210000000 01222 58999888888888654322 2222444445555678899999999999999999998764
Q ss_pred -------CC-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEE
Q 011724 246 -------QP-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFV 317 (478)
Q Consensus 246 -------~p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i 317 (478)
.| ++.|||++.... ...+++++.+||+.++++++|||||||....+.+.+++++.+|+.++++||
T Consensus 228 ~~~~~~~~~~v~~VGPl~~~~~-------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~Fl 300 (470)
T PLN03015 228 MELNRVMKVPVYPIGPIVRTNV-------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFV 300 (470)
T ss_pred cccccccCCceEEecCCCCCcc-------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEE
Confidence 24 999999984221 111145799999999889999999999999999999999999999999999
Q ss_pred EEECCCCC--------CCCccCCCChhhhhhhccCCCeEE-eeccChHhhhhccCcceeeeccCchhhHHHHhcCcceec
Q 011724 318 WVLRPDIV--------SSDETDFLPVGFEEKIKISGRGLI-VPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLC 388 (478)
Q Consensus 318 ~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~nv~v-~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~ 388 (478)
|++..... .++..+.+|++|.++ ..++..+ .+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 301 Wv~r~~~~~~~~~~~~~~~~~~~lp~~f~er--~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~ 378 (470)
T PLN03015 301 WVLRRPASYLGASSSDDDQVSASLPEGFLDR--TRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVA 378 (470)
T ss_pred EEEecCccccccccccccchhhcCChHHHHh--hccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEe
Confidence 99963211 001123578898887 6666654 599999999999999999999999999999999999999
Q ss_pred cCcccchhHHHHHhhc---------------ccCHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 011724 389 FPLLTDQFTNRKLVKS---------------SITKEEVSEKINRLMSG--KSSDELRKNIKEVRKKLENALSADGSSQKN 451 (478)
Q Consensus 389 ~P~~~DQ~~na~rv~~---------------~~t~~~l~~~v~~ll~~--~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~ 451 (478)
+|+++||+.||+++++ .+++++|+++|+++|.+ ++..++|+||++++++.++|+.+||||+.+
T Consensus 379 ~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~n 458 (470)
T PLN03015 379 WPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNS 458 (470)
T ss_pred cccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 9999999999999954 26899999999999962 446899999999999999999999999999
Q ss_pred HHHHHHHH
Q 011724 452 FNQFINDV 459 (478)
Q Consensus 452 ~~~~i~~~ 459 (478)
+++|++++
T Consensus 459 l~~~~~~~ 466 (470)
T PLN03015 459 LFEWAKRC 466 (470)
T ss_pred HHHHHHhc
Confidence 99999876
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.9e-58 Score=470.26 Aligned_cols=430 Identities=25% Similarity=0.464 Sum_probs=328.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCchhh----hhhhhcCCCCCcchhccccCCCCCeEEEEc
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSG----FTITFVNTHSIHH----QITKAQSNGDEDDIFAGARKAGLDIRYATV 80 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rG----h~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (478)
+.||+++|+|++||++|++.||+.|+.+| +.|||++++.... .+...+.. .. ..+.+|+|..+
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~--------~~-~~~~~i~~~~l 73 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRR--------EA-ASGLDIRFHHL 73 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhh--------cc-cCCCCEEEEEC
Confidence 36999999999999999999999999986 8999999876432 23311111 00 11125999999
Q ss_pred CCCCCC-CCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHH
Q 011724 81 SDGLPL-NFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTL 159 (478)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 159 (478)
|++..+ +. .+...++..+...+.+.++++++.+. .++++||+|.+..|+..+|+++|||++.++++.++.++.
T Consensus 74 p~~~~p~~~---e~~~~~~~~~~~~~~~~l~~~L~~l~---~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~ 147 (480)
T PLN00164 74 PAVEPPTDA---AGVEEFISRYIQLHAPHVRAAIAGLS---CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLAL 147 (480)
T ss_pred CCCCCCCcc---ccHHHHHHHHHHhhhHHHHHHHHhcC---CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHH
Confidence 976422 21 13345555556677777888877653 357999999999999999999999999999999998888
Q ss_pred HHhhhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHH
Q 011724 160 YYHMDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETI 239 (478)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~ 239 (478)
+.+.+........+.... ..+. .+||++.....+++...... .+.....+....+...+++++++||+++||+..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~-~~~~-~iPGlp~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 223 (480)
T PLN00164 148 MLRLPALDEEVAVEFEEM-EGAV-DVPGLPPVPASSLPAPVMDK--KSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVL 223 (480)
T ss_pred HhhhhhhcccccCccccc-Ccce-ecCCCCCCChHHCCchhcCC--CcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHH
Confidence 777654322111111110 1122 37888777777887654322 1222334444455667899999999999999999
Q ss_pred HHHHhc-------CC-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhh
Q 011724 240 SALHQK-------QP-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLL 311 (478)
Q Consensus 240 ~~~~~~-------~p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~ 311 (478)
++.+.. .| ++.|||+....... ....+++++.+||+.++++++|||||||......+.+.+++.+|+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~----~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~ 299 (480)
T PLN00164 224 AAIADGRCTPGRPAPTVYPIGPVISLAFTP----PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLER 299 (480)
T ss_pred HHHHhccccccCCCCceEEeCCCccccccC----CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 998763 25 99999998432111 1111257899999999999999999999998899999999999999
Q ss_pred CCCeEEEEECCCCCC-------CCccCCCChhhhhhhccCCCeEEe-eccChHhhhhccCcceeeeccCchhhHHHHhcC
Q 011724 312 SEVSFVWVLRPDIVS-------SDETDFLPVGFEEKIKISGRGLIV-PWCSQIDVISHSAIGGFLTHCGWNSIQESIWCS 383 (478)
Q Consensus 312 ~~~~~i~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~nv~v~-~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~G 383 (478)
++.+|||++...... ....+.+|++|.++ ..+...++ +|+||.+||+|+++++|||||||||++||+++|
T Consensus 300 s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~--~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~G 377 (480)
T PLN00164 300 SGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLER--TKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHG 377 (480)
T ss_pred cCCCEEEEEcCCcccccccccccchhhhCChHHHHH--hcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcC
Confidence 999999999743110 01123477888877 55655555 999999999999999999999999999999999
Q ss_pred cceeccCcccchhHHHHHhhc--------c--------cCHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHhcC
Q 011724 384 VPLLCFPLLTDQFTNRKLVKS--------S--------ITKEEVSEKINRLMSGK--SSDELRKNIKEVRKKLENALSAD 445 (478)
Q Consensus 384 vP~l~~P~~~DQ~~na~rv~~--------~--------~t~~~l~~~v~~ll~~~--~~~~~r~~a~~l~~~~~~a~~~g 445 (478)
||||++|+++||+.||.++++ . +++++|.++|+++|.++ +...+|+||+++++++++|+.+|
T Consensus 378 VP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~g 457 (480)
T PLN00164 378 VPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEG 457 (480)
T ss_pred CCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999988754 1 47899999999999743 25779999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcC
Q 011724 446 GSSQKNFNQFINDVQFLT 463 (478)
Q Consensus 446 g~~~~~~~~~i~~~~~~~ 463 (478)
|||+..+++|++++....
T Consensus 458 GSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 458 GSSYAALQRLAREIRHGA 475 (480)
T ss_pred CcHHHHHHHHHHHHHhcc
Confidence 999999999999998754
No 14
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.2e-58 Score=466.31 Aligned_cols=432 Identities=24% Similarity=0.406 Sum_probs=320.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcC----CCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVS----DGL 84 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~ 84 (478)
+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+. .. .. ...++|+++.+| +++
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~---~~--------~~-~~~~~i~~~~lp~p~~dgl 73 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLP---KI--------PS-QLSSSITLVSFPLPSVPGL 73 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhh---hc--------cc-cCCCCeeEEECCCCccCCC
Confidence 379999999999999999999999999999999999998876665 21 00 111258888887 566
Q ss_pred CCCCCCCCCH----HHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHH
Q 011724 85 PLNFDRSLNH----DQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLY 160 (478)
Q Consensus 85 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 160 (478)
+++.+...+. ..++....+.+...++++++.+ ++++||+|.+..|+..+|+++|||++.++++++..++.+
T Consensus 74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~ 148 (472)
T PLN02670 74 PSSAESSTDVPYTKQQLLKKAFDLLEPPLTTFLETS-----KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFI 148 (472)
T ss_pred CCCcccccccchhhHHHHHHHHHHhHHHHHHHHHhC-----CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHH
Confidence 6543332222 1344455566777777777663 489999999999999999999999999999998877776
Q ss_pred HhhhhhhhcCCCCCCCCCC-CccccCCCCC--CCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHH
Q 011724 161 YHMDLLRSHGHFASTDNRE-DTIDYIPGVR--AIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESE 237 (478)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~-~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~ 237 (478)
.+.......+..+...... ..+..+|+.+ ....++++.++............+........+++++++||+++||+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~ 228 (472)
T PLN02670 149 GPPSSLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPE 228 (472)
T ss_pred hhhHhhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHH
Confidence 5443222223222211100 0111223222 133456665543221111222333344445667899999999999999
Q ss_pred HHHHHHhcC-C-ccccccCCCCC-CCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCC
Q 011724 238 TISALHQKQ-P-TYAIGPIFPAG-FTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEV 314 (478)
Q Consensus 238 ~~~~~~~~~-p-~~~vGp~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~ 314 (478)
.+++.+... + ++.|||+.... .............+++.+||+.++++++|||||||...++.+.+.+++.+|+.+++
T Consensus 229 ~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~ 308 (472)
T PLN02670 229 WFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSET 308 (472)
T ss_pred HHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCC
Confidence 999997753 4 99999997531 10100000000026799999999888999999999999999999999999999999
Q ss_pred eEEEEECCCCCC-CCccCCCChhhhhhhccCCCeEE-eeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcc
Q 011724 315 SFVWVLRPDIVS-SDETDFLPVGFEEKIKISGRGLI-VPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLL 392 (478)
Q Consensus 315 ~~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~~nv~v-~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~ 392 (478)
+|||++...... .+..+.+|++|.++ ..++..+ .+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 309 ~FlWv~r~~~~~~~~~~~~lp~~f~~~--~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~ 386 (472)
T PLN02670 309 PFFWVLRNEPGTTQNALEMLPDGFEER--VKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL 386 (472)
T ss_pred CEEEEEcCCcccccchhhcCChHHHHh--ccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch
Confidence 999999753111 11123588899887 6666555 5999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHhhc----------c----cCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011724 393 TDQFTNRKLVKS----------S----ITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFIND 458 (478)
Q Consensus 393 ~DQ~~na~rv~~----------~----~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~ 458 (478)
+||+.||+++++ . ++.++|.++|+++|.+++..+||+||+++++++++ .+...+.+++|++.
T Consensus 387 ~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~ 462 (472)
T PLN02670 387 NEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVHY 462 (472)
T ss_pred hccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHHHH
Confidence 999999999987 1 78999999999999744345899999999999997 47778999999999
Q ss_pred HHhcC
Q 011724 459 VQFLT 463 (478)
Q Consensus 459 ~~~~~ 463 (478)
+..++
T Consensus 463 l~~~~ 467 (472)
T PLN02670 463 LRENR 467 (472)
T ss_pred HHHhc
Confidence 98755
No 15
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=5.4e-58 Score=466.85 Aligned_cols=432 Identities=26% Similarity=0.473 Sum_probs=319.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcC-----C
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVS-----D 82 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~ 82 (478)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+.+.. .. ..+..|+|+.+| +
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~--------~~-~~~~~i~~~~lp~p~~~d 77 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDR--------AR-ESGLPIRLVQIPFPCKEV 77 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhh--------cc-ccCCCeEEEEcCCCCccC
Confidence 347999999999999999999999999999999999999887666522111 00 111148898887 5
Q ss_pred CCCCCCCCCC-----CHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHH
Q 011724 83 GLPLNFDRSL-----NHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVL 157 (478)
Q Consensus 83 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 157 (478)
++|++.+... .+...+......+...++++++... .+|++||+|.+..|+..+|+++|||++.+++..++.+
T Consensus 78 glp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~---~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~ 154 (491)
T PLN02534 78 GLPIGCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAK---PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSL 154 (491)
T ss_pred CCCCCccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcC---CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHH
Confidence 7766533322 1222222333445667777766532 4689999999999999999999999999999988877
Q ss_pred HHHHhhhhhhhcCCCCCCCCCCCccccCCCCCC---CCccccchhhhhcCCchHHHHHHHHHhhh-hccccEEEecChhh
Q 011724 158 TLYYHMDLLRSHGHFASTDNREDTIDYIPGVRA---IERKDLMSYLQATDTSTVVHRIIQKAFED-VKRVDFILCNTVHE 233 (478)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 233 (478)
.....+....... +...+ ..+. .+|+++. ....+++..+.... ..+.+...+.. ...++++++|||++
T Consensus 155 ~~~~~~~~~~~~~--~~~~~-~~~~-~iPg~p~~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf~e 226 (491)
T PLN02534 155 LSSHNIRLHNAHL--SVSSD-SEPF-VVPGMPQSIEITRAQLPGAFVSLP----DLDDVRNKMREAESTAFGVVVNSFNE 226 (491)
T ss_pred HHHHHHHHhcccc--cCCCC-Ccee-ecCCCCccccccHHHCChhhcCcc----cHHHHHHHHHhhcccCCEEEEecHHH
Confidence 6543332111111 11111 1222 4677753 45555655432211 12223333332 23567999999999
Q ss_pred hcHHHHHHHHhcC-C-ccccccCCCCCCCCCCC--CCCCC--ChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHH
Q 011724 234 LESETISALHQKQ-P-TYAIGPIFPAGFTKSLV--PTSLW--SESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIAL 307 (478)
Q Consensus 234 le~~~~~~~~~~~-p-~~~vGp~~~~~~~~~~~--~~~l~--~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~ 307 (478)
||+..+++++... + ++.|||+.......... ....+ +++++.+||+.++++++|||||||......+.+.+++.
T Consensus 227 LE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~ 306 (491)
T PLN02534 227 LEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGL 306 (491)
T ss_pred hhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHH
Confidence 9999999997755 4 99999997532100000 00111 23579999999998999999999999999999999999
Q ss_pred HHhhCCCeEEEEECCCCCCCC-ccCCCChhhhhhhcc-CCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcc
Q 011724 308 GLLLSEVSFVWVLRPDIVSSD-ETDFLPVGFEEKIKI-SGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVP 385 (478)
Q Consensus 308 al~~~~~~~i~~~~~~~~~~~-~~~~l~~~~~~~~~~-~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP 385 (478)
+|+.++.+|||++........ ....+|++|.++ . +.++++.+|+||.+||+|+++++||||||+||++||+++|||
T Consensus 307 gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~--~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP 384 (491)
T PLN02534 307 GLEASKKPFIWVIKTGEKHSELEEWLVKENFEER--IKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVP 384 (491)
T ss_pred HHHhCCCCEEEEEecCccccchhhhcCchhhHHh--hccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCC
Confidence 999999999999974211110 111357888765 3 456677799999999999999999999999999999999999
Q ss_pred eeccCcccchhHHHHHhhc--------c----------------cCHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHH
Q 011724 386 LLCFPLLTDQFTNRKLVKS--------S----------------ITKEEVSEKINRLMS--GKSSDELRKNIKEVRKKLE 439 (478)
Q Consensus 386 ~l~~P~~~DQ~~na~rv~~--------~----------------~t~~~l~~~v~~ll~--~~~~~~~r~~a~~l~~~~~ 439 (478)
||++|+++||+.||+++++ . +++++|+++|+++|. +++..++|+||++++++.+
T Consensus 385 ~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~ 464 (491)
T PLN02534 385 MITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMAR 464 (491)
T ss_pred EEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999984 1 578999999999996 4446899999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHh
Q 011724 440 NALSADGSSQKNFNQFINDVQF 461 (478)
Q Consensus 440 ~a~~~gg~~~~~~~~~i~~~~~ 461 (478)
+|+.+||||++.+++||+++..
T Consensus 465 ~Av~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 465 KAMELGGSSHINLSILIQDVLK 486 (491)
T ss_pred HHhcCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999975
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.4e-58 Score=472.96 Aligned_cols=436 Identities=26% Similarity=0.469 Sum_probs=313.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccC-CCCCeEEEEcC---C
Q 011724 7 KPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARK-AGLDIRYATVS---D 82 (478)
Q Consensus 7 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~---~ 82 (478)
.++.||+++|+|+.||++|++.||+.|+.||++|||++++.+...++ +.+. .+..... ....+.+..+| +
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~---~~~a---~~~~~~~~~~~~~~~~~~p~~~~ 76 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFE---KPIE---AFKNLNPGLEIDIQIFNFPCVEL 76 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhh---hhhh---hhcccCCCCcceEEEeeCCCCcC
Confidence 45689999999999999999999999999999999999999887776 3210 0000000 00135555666 3
Q ss_pred CCCCCCCCCC--------CHHHHHHHHH---HHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEec
Q 011724 83 GLPLNFDRSL--------NHDQFMECLL---HVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 83 ~~~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 151 (478)
++|++.+... ....++..+. ..+...++++++. .+||+||+|.++.|+..+|+++|||++.+++
T Consensus 77 glP~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-----~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~ 151 (482)
T PLN03007 77 GLPEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET-----TRPDCLVADMFFPWATEAAEKFGVPRLVFHG 151 (482)
T ss_pred CCCCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCEEEECCcchhHHHHHHHhCCCeEEeec
Confidence 5555432221 1112232222 2333344444432 4699999999999999999999999999999
Q ss_pred chhHHHHHHHhhhhhhhcCCCCCCCCCCCccccCCCCCC---CCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEe
Q 011724 152 EPALVLTLYYHMDLLRSHGHFASTDNREDTIDYIPGVRA---IERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILC 228 (478)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 228 (478)
+.++.++....+.........+ .. .... .+|+++. ....+++. ......+...+....+...+++.+++
T Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~--~~-~~~~-~~pg~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~ 223 (482)
T PLN03007 152 TGYFSLCASYCIRVHKPQKKVA--SS-SEPF-VIPDLPGDIVITEEQIND----ADEESPMGKFMKEVRESEVKSFGVLV 223 (482)
T ss_pred ccHHHHHHHHHHHhcccccccC--CC-Ccee-eCCCCCCccccCHHhcCC----CCCchhHHHHHHHHHhhcccCCEEEE
Confidence 8887665544332111000111 00 1111 2566642 12222221 11112233333333445678899999
Q ss_pred cChhhhcHHHHHHHHhcC-C-ccccccCCCCCCCC---CCCCCCCC-ChhhHhHhhcCCCCCceEEEEecccccCCHHHH
Q 011724 229 NTVHELESETISALHQKQ-P-TYAIGPIFPAGFTK---SLVPTSLW-SESECTQWLNTKPRGSVLYVSFGSYAHASKNDI 302 (478)
Q Consensus 229 ~~~~~le~~~~~~~~~~~-p-~~~vGp~~~~~~~~---~~~~~~l~-~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~ 302 (478)
||+++||+...+++++.. + +++|||+....... ..+..+.+ +++++.+|++.++++++|||||||......+.+
T Consensus 224 Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~ 303 (482)
T PLN03007 224 NSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQL 303 (482)
T ss_pred ECHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHH
Confidence 999999999899887654 3 99999986532210 00011111 247799999999889999999999998888999
Q ss_pred HHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhc
Q 011724 303 VEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWC 382 (478)
Q Consensus 303 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~ 382 (478)
.+++.+|+..+++|||+++.........+.+|++|.++. .+.|+++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 304 ~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~-~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~ 382 (482)
T PLN03007 304 FEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERT-KGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAA 382 (482)
T ss_pred HHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHh-ccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHc
Confidence 999999999999999999853111111234788887762 2567888899999999999999999999999999999999
Q ss_pred CcceeccCcccchhHHHHHhhc-------------------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHh
Q 011724 383 SVPLLCFPLLTDQFTNRKLVKS-------------------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALS 443 (478)
Q Consensus 383 GvP~l~~P~~~DQ~~na~rv~~-------------------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~ 443 (478)
|||||++|+++||+.||+++++ .+++++|.++|+++|.+++..+||+||+++++++++|+.
T Consensus 383 GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~ 462 (482)
T PLN03007 383 GLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVE 462 (482)
T ss_pred CCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998763 268999999999999844445999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhc
Q 011724 444 ADGSSQKNFNQFINDVQFL 462 (478)
Q Consensus 444 ~gg~~~~~~~~~i~~~~~~ 462 (478)
+||||+.++++|++++.+.
T Consensus 463 ~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 463 EGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999864
No 17
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-57 Score=460.71 Aligned_cols=407 Identities=25% Similarity=0.407 Sum_probs=304.0
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEc
Q 011724 1 MENNHKKPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATV 80 (478)
Q Consensus 1 ~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (478)
||+. .||+++|+|+.||++|++.||+.|+++||+|||++++.+...+. .. ++ ...++++..+
T Consensus 1 ~~~~-----~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~---~~--------~a--~~~~i~~~~l 62 (442)
T PLN02208 1 MEPK-----FHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLE---HH--------NL--FPDSIVFHPL 62 (442)
T ss_pred CCCC-----CEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhh---cc--------cC--CCCceEEEEe
Confidence 6666 99999999999999999999999999999999999998887776 33 21 1114555543
Q ss_pred --C--CCCCCCCCCCCCHH----HHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecc
Q 011724 81 --S--DGLPLNFDRSLNHD----QFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTE 152 (478)
Q Consensus 81 --~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~ 152 (478)
+ ++++++.+....+. .++......+...++++++. .++|+||+| ++.|+..+|+.+|||++.++++
T Consensus 63 ~~p~~dgLp~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~-----~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~ 136 (442)
T PLN02208 63 TIPPVNGLPAGAETTSDIPISMDNLLSEALDLTRDQVEAAVRA-----LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIV 136 (442)
T ss_pred CCCCccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhh-----CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhh
Confidence 3 45555433222222 22233334455556666654 358999999 5789999999999999999999
Q ss_pred hhHHHHHHHhhhhhhhcCCCCCCCCCCCccccCCCCCC----CCccccchhhhhcCCchHHHHHHHHHh-hhhccccEEE
Q 011724 153 PALVLTLYYHMDLLRSHGHFASTDNREDTIDYIPGVRA----IERKDLMSYLQATDTSTVVHRIIQKAF-EDVKRVDFIL 227 (478)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 227 (478)
.+..+. +.+.+. .... . .+|+++. ....+++.+ . .....+..+...+ +...++++++
T Consensus 137 ~a~~~~-~~~~~~----~~~~------~---~~pglp~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~vl 198 (442)
T PLN02208 137 SATTIA-HTHVPG----GKLG------V---PPPGYPSSKVLFRENDAHAL-A---TLSIFYKRLYHQITTGLKSCDVIA 198 (442)
T ss_pred hHHHHH-HHccCc----cccC------C---CCCCCCCcccccCHHHcCcc-c---ccchHHHHHHHHHHhhhccCCEEE
Confidence 887654 333221 0000 0 1355543 233344422 1 1122233333322 3456789999
Q ss_pred ecChhhhcHHHHHHHHhcC-C-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHH
Q 011724 228 CNTVHELESETISALHQKQ-P-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEI 305 (478)
Q Consensus 228 ~~~~~~le~~~~~~~~~~~-p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~ 305 (478)
+||+++||+..+++.+... | ++.|||+....... .++ ++++.+||+.++++++|||||||....+.+.+.++
T Consensus 199 ~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~----~~~--~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~ 272 (442)
T PLN02208 199 LRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTS----KPL--EEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQEL 272 (442)
T ss_pred EECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCCC----CCC--HHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHH
Confidence 9999999999999887643 6 99999998643211 235 78899999999888999999999999899989999
Q ss_pred HHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCC-CeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCc
Q 011724 306 ALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISG-RGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSV 384 (478)
Q Consensus 306 ~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~Gv 384 (478)
+.+++..+.+++|++..........+.+|++|.++ ..+ |+.+.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 273 ~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r--~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GV 350 (442)
T PLN02208 273 CLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEER--VKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDC 350 (442)
T ss_pred HHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHH--HhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCC
Confidence 99988888888888863311001123588899887 444 666669999999999999999999999999999999999
Q ss_pred ceeccCcccchhHHHHHhhc-----------c---cCHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHhcCCCh
Q 011724 385 PLLCFPLLTDQFTNRKLVKS-----------S---ITKEEVSEKINRLMSGK--SSDELRKNIKEVRKKLENALSADGSS 448 (478)
Q Consensus 385 P~l~~P~~~DQ~~na~rv~~-----------~---~t~~~l~~~v~~ll~~~--~~~~~r~~a~~l~~~~~~a~~~gg~~ 448 (478)
|||++|+++||+.||+++++ . +++++|.++|+++|.++ ..+++|++++++++++.+ +|||
T Consensus 351 P~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS 426 (442)
T PLN02208 351 QMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLL 426 (442)
T ss_pred CEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcH
Confidence 99999999999999998765 2 79999999999999743 256799999999999853 7899
Q ss_pred HHHHHHHHHHHHh
Q 011724 449 QKNFNQFINDVQF 461 (478)
Q Consensus 449 ~~~~~~~i~~~~~ 461 (478)
...+++|++++..
T Consensus 427 ~~~l~~~v~~l~~ 439 (442)
T PLN02208 427 TGYVDKFVEELQE 439 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.8e-57 Score=466.30 Aligned_cols=433 Identities=25% Similarity=0.412 Sum_probs=316.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCchhh-hhhhhcCCCCCcchhccccCCCCCeEEEEcCCC
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGF---TITFVNTHSIHH-QITKAQSNGDEDDIFAGARKAGLDIRYATVSDG 83 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh---~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (478)
++.||+++|+|++||++|++.||+.|+.+|. .||++++..... .....+.. .....++|+|+.+|++
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~---------~~~~~~~i~~~~lp~~ 72 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKS---------LIASEPRIRLVTLPEV 72 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhh---------cccCCCCeEEEECCCC
Confidence 4579999999999999999999999999983 567777543221 11100010 0011236999999865
Q ss_pred CCC-CCCC-CCCHHHHHHHHHHHhhHHHHHHHHHhhc----cCC-CccEEEEcCCchhhHHHHHHcCCccEEEecchhHH
Q 011724 84 LPL-NFDR-SLNHDQFMECLLHVFSAHVDELVGNLIQ----LNP-EMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALV 156 (478)
Q Consensus 84 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~l~~----~~~-~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 156 (478)
..+ ..+. .......+..+...+...++++++.+.. .+. ++++||+|.+..|+..+|+++|||++.++++.++.
T Consensus 73 ~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~ 152 (475)
T PLN02167 73 QDPPPMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGF 152 (475)
T ss_pred CCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHH
Confidence 421 1110 1112223333444555666666665531 112 45999999999999999999999999999999988
Q ss_pred HHHHHhhhhhhhcCCCCCCCCC-CCccccCCCC-CCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhh
Q 011724 157 LTLYYHMDLLRSHGHFASTDNR-EDTIDYIPGV-RAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHEL 234 (478)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 234 (478)
++..++.+............+. +.+. .+||+ +.+...+++...... ...+.+...++...+++++++||+++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iPgl~~~l~~~dlp~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf~eL 227 (475)
T PLN02167 153 LGMMKYLPERHRKTASEFDLSSGEEEL-PIPGFVNSVPTKVLPPGLFMK----ESYEAWVEIAERFPEAKGILVNSFTEL 227 (475)
T ss_pred HHHHHHHHHhccccccccccCCCCCee-ECCCCCCCCChhhCchhhhCc----chHHHHHHHHHhhcccCEeeeccHHHH
Confidence 8877665432211110100100 1222 47887 346666666433221 113334444555678899999999999
Q ss_pred cHHHHHHHHhc---CC-ccccccCCCCCCCCCCCCCCCC--ChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHH
Q 011724 235 ESETISALHQK---QP-TYAIGPIFPAGFTKSLVPTSLW--SESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALG 308 (478)
Q Consensus 235 e~~~~~~~~~~---~p-~~~vGp~~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~a 308 (478)
|++.+++.+.. .| ++.|||+....... ...++ +++++.+||+.++++++|||||||......+.+.+++.+
T Consensus 228 E~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~---~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~ 304 (475)
T PLN02167 228 EPNAFDYFSRLPENYPPVYPVGPILSLKDRT---SPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQA 304 (475)
T ss_pred HHHHHHHHHhhcccCCeeEEecccccccccc---CCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHH
Confidence 99999988653 46 99999998632210 01121 236799999999888999999999998899999999999
Q ss_pred HhhCCCeEEEEECCCCC-CCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCccee
Q 011724 309 LLLSEVSFVWVLRPDIV-SSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLL 387 (478)
Q Consensus 309 l~~~~~~~i~~~~~~~~-~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l 387 (478)
|+.++++|||+++.... .....+.+|++|.++ ..+++++++|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 305 l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er--~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l 382 (475)
T PLN02167 305 LELVGCRFLWSIRTNPAEYASPYEPLPEGFMDR--VMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIA 382 (475)
T ss_pred HHhCCCcEEEEEecCcccccchhhhCChHHHHH--hccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEE
Confidence 99999999999874311 011123478888887 778889999999999999999999999999999999999999999
Q ss_pred ccCcccchhHHHHHhh-c---------c--------cCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChH
Q 011724 388 CFPLLTDQFTNRKLVK-S---------S--------ITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQ 449 (478)
Q Consensus 388 ~~P~~~DQ~~na~rv~-~---------~--------~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~ 449 (478)
++|+++||+.||+++. . . +++++|+++|+++|.+ +.+||+||+++++++++|+.+||||+
T Consensus 383 ~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~--~~~~r~~a~~~~~~~~~av~~gGsS~ 460 (475)
T PLN02167 383 TWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDG--EDVPRKKVKEIAEAARKAVMDGGSSF 460 (475)
T ss_pred eccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999998743 3 1 4889999999999973 24899999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 011724 450 KNFNQFINDVQF 461 (478)
Q Consensus 450 ~~~~~~i~~~~~ 461 (478)
..+++||+++..
T Consensus 461 ~~l~~~v~~i~~ 472 (475)
T PLN02167 461 VAVKRFIDDLLG 472 (475)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=3.3e-57 Score=455.37 Aligned_cols=414 Identities=25% Similarity=0.429 Sum_probs=311.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcC--CCC
Q 011724 7 KPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVS--DGL 84 (478)
Q Consensus 7 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 84 (478)
+.++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+. .. ........+++..+| +++
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~---~~--------~~~~~~~~v~~~~~p~~~gl 71 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLE---HL--------NLFPHNIVFRSVTVPHVDGL 71 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhc---cc--------ccCCCCceEEEEECCCcCCC
Confidence 34589999999999999999999999999999999999999766655 21 000111147777787 666
Q ss_pred CCCCCCCC----CHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHH
Q 011724 85 PLNFDRSL----NHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLY 160 (478)
Q Consensus 85 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 160 (478)
+++.+... +....+....+.+...++++++.+ +||+||+|. ..|+..+|+++|||++.+++..++.++..
T Consensus 72 p~g~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-----~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~ 145 (453)
T PLN02764 72 PVGTETVSEIPVTSADLLMSAMDLTRDQVEVVVRAV-----EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASM 145 (453)
T ss_pred CCcccccccCChhHHHHHHHHHHHhHHHHHHHHHhC-----CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHH
Confidence 65533221 112233333445667777777663 489999995 89999999999999999999999877766
Q ss_pred HhhhhhhhcCCCCCCCCCCCccccCCCCCC----CCccccchhhh--hcCCchHHHHHHHHHhhhhccccEEEecChhhh
Q 011724 161 YHMDLLRSHGHFASTDNREDTIDYIPGVRA----IERKDLMSYLQ--ATDTSTVVHRIIQKAFEDVKRVDFILCNTVHEL 234 (478)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 234 (478)
.. + .+..+ . ..|+++. +..+++..+.. ...........+....+...+++++++||+++|
T Consensus 146 ~~-~----~~~~~------~---~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eL 211 (453)
T PLN02764 146 LV-P----GGELG------V---PPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREI 211 (453)
T ss_pred hc-c----cccCC------C---CCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHh
Confidence 42 1 11111 0 1255542 33444443221 101111122222222245677899999999999
Q ss_pred cHHHHHHHHhcC-C-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhC
Q 011724 235 ESETISALHQKQ-P-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLS 312 (478)
Q Consensus 235 e~~~~~~~~~~~-p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~ 312 (478)
|+.++++.+... + ++.|||++...... ... ++++.+|||.++++++|||||||......+.+.++..+|+..
T Consensus 212 E~~~~~~~~~~~~~~v~~VGPL~~~~~~~----~~~--~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s 285 (453)
T PLN02764 212 EGNFCDYIEKHCRKKVLLTGPVFPEPDKT----REL--EERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELT 285 (453)
T ss_pred hHHHHHHHHhhcCCcEEEeccCccCcccc----ccc--hhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhC
Confidence 999999997753 4 99999997543100 112 568999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEe-eccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCc
Q 011724 313 EVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIV-PWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPL 391 (478)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~-~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~ 391 (478)
+.+++|++..........+.+|++|.++ ..++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 286 ~~pflwv~r~~~~~~~~~~~lp~~f~~r--~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~ 363 (453)
T PLN02764 286 GSPFLVAVKPPRGSSTIQEALPEGFEER--VKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQ 363 (453)
T ss_pred CCCeEEEEeCCCCCcchhhhCCcchHhh--hccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCc
Confidence 9999999974211011123589999888 66665555 99999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHhhc------c--------cCHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 011724 392 LTDQFTNRKLVKS------S--------ITKEEVSEKINRLMSG--KSSDELRKNIKEVRKKLENALSADGSSQKNFNQF 455 (478)
Q Consensus 392 ~~DQ~~na~rv~~------~--------~t~~~l~~~v~~ll~~--~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~ 455 (478)
++||+.||+++++ . ++.++|.++|+++|.+ ++..++|++++++++++++ ||||...+++|
T Consensus 364 ~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~l 439 (453)
T PLN02764 364 LGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNF 439 (453)
T ss_pred ccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHH
Confidence 9999999999965 2 6899999999999974 2346699999999999966 79999999999
Q ss_pred HHHHHhcC
Q 011724 456 INDVQFLT 463 (478)
Q Consensus 456 i~~~~~~~ 463 (478)
+++++...
T Consensus 440 v~~~~~~~ 447 (453)
T PLN02764 440 IESLQDLV 447 (453)
T ss_pred HHHHHHhc
Confidence 99998754
No 20
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.2e-57 Score=458.32 Aligned_cols=420 Identities=24% Similarity=0.410 Sum_probs=313.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSG--FTITF--VNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGL 84 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (478)
..||+++|+|++||++|++.||+.|+.+| +.||+ +.++.+...+.+.... .....++|+|..+|++.
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~lp~~~ 73 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISS---------VSSSFPSITFHHLPAVT 73 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhcc---------ccCCCCCeEEEEcCCCC
Confidence 36999999999999999999999999998 45555 5554433222200001 00111269999999775
Q ss_pred CCCC--CCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHh
Q 011724 85 PLNF--DRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYH 162 (478)
Q Consensus 85 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 162 (478)
+... ....+....+..+...+...++++++.+.. ..++++||+|.+..|+..+|+++|||++.++++.++.++.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~ 152 (451)
T PLN03004 74 PYSSSSTSRHHHESLLLEILCFSNPSVHRTLFSLSR-NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFY 152 (451)
T ss_pred CCCCccccccCHHHHHHHHHHhhhHHHHHHHHhcCC-CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHH
Confidence 4221 111233334444445667777788777632 1346999999999999999999999999999999998888777
Q ss_pred hhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHH
Q 011724 163 MDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISAL 242 (478)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~ 242 (478)
.+..... .+.....+.....+||++.+..++++...... .......+........+++.+++|||++||+..++++
T Consensus 153 ~~~~~~~--~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l 228 (451)
T PLN03004 153 LPTIDET--TPGKNLKDIPTVHIPGVPPMKGSDMPKAVLER--DDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAI 228 (451)
T ss_pred HHhcccc--ccccccccCCeecCCCCCCCChHHCchhhcCC--chHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHH
Confidence 5532211 11100001122258888887888888655422 2233444444555667789999999999999999999
Q ss_pred Hhc--CC-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEE
Q 011724 243 HQK--QP-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWV 319 (478)
Q Consensus 243 ~~~--~p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 319 (478)
+.. .+ ++.|||++...... . ...+++.++.+||+.++++++|||||||....+.+.+++++.+|+.++++|||+
T Consensus 229 ~~~~~~~~v~~vGPl~~~~~~~-~--~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~ 305 (451)
T PLN03004 229 TEELCFRNIYPIGPLIVNGRIE-D--RNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWV 305 (451)
T ss_pred HhcCCCCCEEEEeeeccCcccc-c--cccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 764 24 99999998532111 0 011124579999999988999999999999999999999999999999999999
Q ss_pred ECCCCCCC----CccCCCChhhhhhhccCC-CeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccc
Q 011724 320 LRPDIVSS----DETDFLPVGFEEKIKISG-RGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTD 394 (478)
Q Consensus 320 ~~~~~~~~----~~~~~l~~~~~~~~~~~~-nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~D 394 (478)
+....... .....+|++|.++ ..+ |+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 306 ~r~~~~~~~~~~~~~~~lp~gf~er--~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~D 383 (451)
T PLN03004 306 VRNPPELEKTELDLKSLLPEGFLSR--TEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAE 383 (451)
T ss_pred EcCCccccccccchhhhCChHHHHh--ccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecccccc
Confidence 98431100 0111378899888 544 6777799999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhc--------------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHH
Q 011724 395 QFTNRKLVKS--------------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQK 450 (478)
Q Consensus 395 Q~~na~rv~~--------------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~ 450 (478)
|+.||+++++ .+++++|+++|+++|. +++||+|+++++++.+.|+.+||||+.
T Consensus 384 Q~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~---~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 384 QRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIG---ECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred chhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999974 1589999999999998 889999999999999999999999863
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=5.5e-56 Score=449.36 Aligned_cols=407 Identities=24% Similarity=0.403 Sum_probs=301.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEc--C--CC
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATV--S--DG 83 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~ 83 (478)
++.||+++|+|++||++|++.||+.|+++|++|||++++.+...++ .. +. ..++++|..+ | ++
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~---~~--------~~--~~~~i~~~~i~lP~~dG 69 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQ---PL--------NL--FPDSIVFEPLTLPPVDG 69 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhc---cc--------cc--CCCceEEEEecCCCcCC
Confidence 4489999999999999999999999999999999999998877775 32 11 1114777544 4 56
Q ss_pred CCCCCCCCCCH----HHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHH
Q 011724 84 LPLNFDRSLNH----DQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTL 159 (478)
Q Consensus 84 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 159 (478)
+|++.+...++ ...+......+...++++++. .+||+||+|. ..|+..+|+++|||++.++++.++.++.
T Consensus 70 LP~g~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~-----~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~ 143 (446)
T PLN00414 70 LPFGAETASDLPNSTKKPIFDAMDLLRDQIEAKVRA-----LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAM 143 (446)
T ss_pred CCCcccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHH
Confidence 66553322222 122222233444555555543 4589999995 8999999999999999999999988777
Q ss_pred HHhhhhhhhcCCCCCCCCCCCccccCCCCCC----CCcccc--chhhhhcCCchHHHHHHHHHhhhhccccEEEecChhh
Q 011724 160 YYHMDLLRSHGHFASTDNREDTIDYIPGVRA----IERKDL--MSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHE 233 (478)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (478)
..+.. ..... .+|+++. +...+. ..++.. ....+....+...+++++++||+++
T Consensus 144 ~~~~~---~~~~~-----------~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~e 203 (446)
T PLN00414 144 VLAPR---AELGF-----------PPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVE 203 (446)
T ss_pred HhCcH---hhcCC-----------CCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHH
Confidence 65421 10000 1233332 111111 111110 1122333334566789999999999
Q ss_pred hcHHHHHHHHhcC-C-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhh
Q 011724 234 LESETISALHQKQ-P-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLL 311 (478)
Q Consensus 234 le~~~~~~~~~~~-p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~ 311 (478)
||+..+++.+... + ++.|||++...... ....+++++.+|||.++++++|||||||......+.+.+++.+|+.
T Consensus 204 LE~~~~~~~~~~~~~~v~~VGPl~~~~~~~----~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~ 279 (446)
T PLN00414 204 LEGNLCDFIERQCQRKVLLTGPMLPEPQNK----SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMEL 279 (446)
T ss_pred HHHHHHHHHHHhcCCCeEEEcccCCCcccc----cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHH
Confidence 9999999988754 4 99999997543111 0110146799999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEe-eccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccC
Q 011724 312 SEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIV-PWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFP 390 (478)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~-~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P 390 (478)
.+.+|+|++..........+.+|++|.++ ..++.+++ +|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 280 s~~~Flwvvr~~~~~~~~~~~lp~~f~~r--~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P 357 (446)
T PLN00414 280 TGLPFLIAVMPPKGSSTVQEALPEGFEER--VKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIP 357 (446)
T ss_pred cCCCeEEEEecCCCcccchhhCChhHHHH--hcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecC
Confidence 99999999964311111224689999988 77777776 9999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhc--------c------cCHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 011724 391 LLTDQFTNRKLVKS--------S------ITKEEVSEKINRLMSGK--SSDELRKNIKEVRKKLENALSADGSSQKNFNQ 454 (478)
Q Consensus 391 ~~~DQ~~na~rv~~--------~------~t~~~l~~~v~~ll~~~--~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~ 454 (478)
++.||+.||+++++ . +++++|+++|+++|.++ ...++|++++++++.+. ++||++ ..+++
T Consensus 358 ~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~ 433 (446)
T PLN00414 358 QLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADK 433 (446)
T ss_pred cccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHH
Confidence 99999999999964 1 79999999999999742 24669999999999974 456634 34899
Q ss_pred HHHHHHhcC
Q 011724 455 FINDVQFLT 463 (478)
Q Consensus 455 ~i~~~~~~~ 463 (478)
||+++...+
T Consensus 434 ~v~~~~~~~ 442 (446)
T PLN00414 434 FVEALENEV 442 (446)
T ss_pred HHHHHHHhc
Confidence 999997644
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.2e-45 Score=380.67 Aligned_cols=392 Identities=18% Similarity=0.223 Sum_probs=271.9
Q ss_pred CEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCC--
Q 011724 10 PHAIAI-CYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPL-- 86 (478)
Q Consensus 10 ~~il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 86 (478)
.||+++ |.++.||+.-+.+|+++|++|||+||++++.... ... . ....+++.+.++.....
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~---~------------~~~~~~~~i~~~~~~~~~~ 84 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYA---S------------HLCGNITEIDASLSVEYFK 84 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccc---c------------CCCCCEEEEEcCCChHHHH
Confidence 678866 7789999999999999999999999999775421 111 0 00115555554311100
Q ss_pred -CCCCC------C---CH----HHHHHHHHHHhhHHHH--HHHHHhhccCCCccEEEEcCCchhhHHHHHHc-CCccEEE
Q 011724 87 -NFDRS------L---NH----DQFMECLLHVFSAHVD--ELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKY-NLVNISF 149 (478)
Q Consensus 87 -~~~~~------~---~~----~~~~~~~~~~~~~~~~--~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~l-giP~v~~ 149 (478)
..... . +. ......+...|...+. ++.+.++.+..++|+||+|.+..|++.+|+.+ ++|.|.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ 164 (507)
T PHA03392 85 KLVKSSAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQI 164 (507)
T ss_pred HHHhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEE
Confidence 00000 0 00 0111122233333332 12333331125799999999889999999999 9999988
Q ss_pred ecchhHHHHHHHhhhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcC-C-----ch-------HHHHHHHHH
Q 011724 150 WTEPALVLTLYYHMDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATD-T-----ST-------VVHRIIQKA 216 (478)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~-----~~-------~~~~~~~~~ 216 (478)
+++........ ..++. +.+++|+|.+..... +-+.++.+.. . .. ...+.+.+.
T Consensus 165 ss~~~~~~~~~-------~~gg~------p~~~syvP~~~~~~~-~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~ 230 (507)
T PHA03392 165 SSGYGLAENFE-------TMGAV------SRHPVYYPNLWRSKF-GNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQ 230 (507)
T ss_pred cCCCCchhHHH-------hhccC------CCCCeeeCCcccCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 87655422111 11112 234557775532222 2222222220 0 00 000111111
Q ss_pred h---------hhhccccEEEecChhhhcHHHHHHHHhcCC-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCce
Q 011724 217 F---------EDVKRVDFILCNTVHELESETISALHQKQP-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSV 286 (478)
Q Consensus 217 ~---------~~~~~~~~~l~~~~~~le~~~~~~~~~~~p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 286 (478)
+ +...+.+.+++|+.+.++ ++++..| +++|||+..+.... .++ ++++.+|++..+ +++
T Consensus 231 ~f~~~~~~~~~l~~~~~l~lvns~~~~d-----~~rp~~p~v~~vGgi~~~~~~~----~~l--~~~l~~fl~~~~-~g~ 298 (507)
T PHA03392 231 QFGPDTPTIRELRNRVQLLFVNVHPVFD-----NNRPVPPSVQYLGGLHLHKKPP----QPL--DDYLEEFLNNST-NGV 298 (507)
T ss_pred HcCCCCCCHHHHHhCCcEEEEecCcccc-----CCCCCCCCeeeecccccCCCCC----CCC--CHHHHHHHhcCC-CcE
Confidence 1 223345688999999666 6788888 99999998643211 356 889999999864 479
Q ss_pred EEEEeccccc---CCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccC
Q 011724 287 LYVSFGSYAH---ASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSA 363 (478)
Q Consensus 287 Vyvs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~ 363 (478)
|||||||... .+.++++.+++|+++.+.++||++++. ..+ .. .|+|+++.+|+||.+||+|+.
T Consensus 299 V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~--------~~~----~~--~p~Nv~i~~w~Pq~~lL~hp~ 364 (507)
T PHA03392 299 VYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE--------VEA----IN--LPANVLTQKWFPQRAVLKHKN 364 (507)
T ss_pred EEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC--------cCc----cc--CCCceEEecCCCHHHHhcCCC
Confidence 9999999863 578899999999999999999998754 111 12 789999999999999999999
Q ss_pred cceeeeccCchhhHHHHhcCcceeccCcccchhHHHHHhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011724 364 IGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS----------SITKEEVSEKINRLMSGKSSDELRKNIKE 433 (478)
Q Consensus 364 v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~ 433 (478)
+++||||||+||++||+++|||||++|+++||+.||+|+++ .+++++|.++|+++|+ |++||+||++
T Consensus 365 v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~---~~~y~~~a~~ 441 (507)
T PHA03392 365 VKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIE---NPKYRKNLKE 441 (507)
T ss_pred CCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhC---CHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 7899999999999999 9999999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 011724 434 VRKKLENALSADGSSQKNFNQFINDVQFLT 463 (478)
Q Consensus 434 l~~~~~~a~~~gg~~~~~~~~~i~~~~~~~ 463 (478)
+++.+++. .-++.+.+...+|.+.+++
T Consensus 442 ls~~~~~~---p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 442 LRHLIRHQ---PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHhCC
Confidence 99999973 3345667778888887765
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.1e-47 Score=399.16 Aligned_cols=400 Identities=22% Similarity=0.291 Sum_probs=221.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCC-CC
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLN-FD 89 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~ 89 (478)
||+++|. +.||+.++..|+++|++|||+||++++......-. .. ...+++..++...+.. ..
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~ 64 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNP---SK-------------PSNIRFETYPDPYPEEEFE 64 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT----------------------S-CCEEEE-----TT---
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccccccc---cc-------------ccceeeEEEcCCcchHHHh
Confidence 6888884 78999999999999999999999998865322211 11 1156666665443321 11
Q ss_pred C-CCCH-HHHHH-------------HH-------HHHhhHHH--HHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCc
Q 011724 90 R-SLNH-DQFME-------------CL-------LHVFSAHV--DELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLV 145 (478)
Q Consensus 90 ~-~~~~-~~~~~-------------~~-------~~~~~~~~--~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP 145 (478)
. ..+. ...+. .. ...|...+ .++++.++. .++|++|+|.+..|+..+|+.+++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP 142 (500)
T PF00201_consen 65 EIFPEFISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIP 142 (500)
T ss_dssp ---TTHHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHT
T ss_pred hhhHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCC
Confidence 1 0110 11111 00 01111100 112222222 3599999999889999999999999
Q ss_pred cEEEecchhHHHHHHHhhhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhc-CCchH-HHHHHHHHh------
Q 011724 146 NISFWTEPALVLTLYYHMDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQAT-DTSTV-VHRIIQKAF------ 217 (478)
Q Consensus 146 ~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~------ 217 (478)
.+.+.++.+... ......+.+.++.|+|.... ...+.+.++.+. +.... ..+.....+
T Consensus 143 ~i~~~s~~~~~~-------------~~~~~~g~p~~psyvP~~~s-~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~ 208 (500)
T PF00201_consen 143 VIIISSSTPMYD-------------LSSFSGGVPSPPSYVPSMFS-DFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDK 208 (500)
T ss_dssp HHHHHHCCSCSC-------------CTCCTSCCCTSTTSTTCBCC-CSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TT
T ss_pred eEEEecccccch-------------hhhhccCCCCChHHhccccc-cCCCccchhhhhhhhhhhhhhccccccchhhHHH
Confidence 987654332110 00000011234446665422 122233333322 11111 111111111
Q ss_pred -------------hhhccccEEEecChhhhcHHHHHHHHhcCC-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCC
Q 011724 218 -------------EDVKRVDFILCNTVHELESETISALHQKQP-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPR 283 (478)
Q Consensus 218 -------------~~~~~~~~~l~~~~~~le~~~~~~~~~~~p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 283 (478)
+.+.+.+.+++|+.+.+ ++|++..| +++||++..... .++ ++++.+|++...+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~l~ns~~~l-----d~prp~~p~v~~vGgl~~~~~------~~l--~~~~~~~~~~~~~ 275 (500)
T PF00201_consen 209 LYKKYFGFPFSFRELLSNASLVLINSHPSL-----DFPRPLLPNVVEVGGLHIKPA------KPL--PEELWNFLDSSGK 275 (500)
T ss_dssp S-EEESS-GGGCHHHHHHHHHCCSSTEEE---------HHHHCTSTTGCGC-S----------TC--HHHHHHHTSTTTT
T ss_pred HHhhhcccccccHHHHHHHHHHhhhccccC-----cCCcchhhcccccCccccccc------ccc--ccccchhhhccCC
Confidence 11223345566777744 57788888 999999976543 357 8999999998556
Q ss_pred CceEEEEecccccC-CHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhcc
Q 011724 284 GSVLYVSFGSYAHA-SKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHS 362 (478)
Q Consensus 284 ~~~Vyvs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~ 362 (478)
+++|||||||.... +.+..+.+++++++.+.+|||++.+. . .. . +++|+++.+|+||.+||+|+
T Consensus 276 ~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~---------~-~~---~--l~~n~~~~~W~PQ~~lL~hp 340 (500)
T PF00201_consen 276 KGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE---------P-PE---N--LPKNVLIVKWLPQNDLLAHP 340 (500)
T ss_dssp TEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS---------H-GC---H--HHTTEEEESS--HHHHHTST
T ss_pred CCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc---------c-cc---c--ccceEEEeccccchhhhhcc
Confidence 78999999999854 44458889999999999999999754 1 11 1 67899999999999999999
Q ss_pred CcceeeeccCchhhHHHHhcCcceeccCcccchhHHHHHhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHHH
Q 011724 363 AIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS----------SITKEEVSEKINRLMSGKSSDELRKNIK 432 (478)
Q Consensus 363 ~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a~ 432 (478)
++++||||||+||+.||+++|||||++|+++||+.||+|+++ ++|+++|.++|+++|+ |++|++||+
T Consensus 341 ~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~---~~~y~~~a~ 417 (500)
T PF00201_consen 341 RVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLE---NPSYKENAK 417 (500)
T ss_dssp TEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHH---SHHHHHHHH
T ss_pred cceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHh---hhHHHHHHH
Confidence 999999999999999999999999999999999999999999 8899999999999999 999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCc---------cccCCCcccCCCC
Q 011724 433 EVRKKLENALSADGSSQKNFNQFINDVQFLTP---------KKCGSATSNHALF 477 (478)
Q Consensus 433 ~l~~~~~~a~~~gg~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~ 477 (478)
++++++++.. -++.+.+...+|.+.+.+. +..+..+++-|+|
T Consensus 418 ~ls~~~~~~p---~~p~~~~~~~ie~v~~~~~~~~l~~~~~~l~~~~~~~lDv~ 468 (500)
T PF00201_consen 418 RLSSLFRDRP---ISPLERAVWWIEYVARHGGAPHLRSPARDLSFYQYYLLDVI 468 (500)
T ss_dssp HHHHTTT-----------------------------------------------
T ss_pred HHHHHHhcCC---CCHHHHHHHHHHHHHhcCCCcccCChhhcCCHHHHHHHHHH
Confidence 9999999742 3445566666777665442 3444555555543
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.6e-40 Score=336.69 Aligned_cols=363 Identities=16% Similarity=0.241 Sum_probs=247.3
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCC--CCC--C
Q 011724 16 CYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLN--FDR--S 91 (478)
Q Consensus 16 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~--~ 91 (478)
.+|+.||++|+++||++|+++||+|+|++++.+.+.++ .. |+.|..++...... ... .
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~---~~---------------G~~~~~~~~~~~~~~~~~~~~~ 63 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVE---AA---------------GAEFVLYGSALPPPDNPPENTE 63 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHH---Hc---------------CCEEEecCCcCccccccccccC
Confidence 57899999999999999999999999999999999998 66 78888887543221 100 0
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhhhhhhhcCC
Q 011724 92 LNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLLRSHGH 171 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 171 (478)
.+....++.+...+...+.++++.++. .+||+||+|.+++++..+|+.+|||+|.+++.+.... .++.. .
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~----~ 133 (392)
T TIGR01426 64 EEPIDIIEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEM----V 133 (392)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----ccccc----c
Confidence 233344444444444455555555443 5799999999889999999999999999865432110 00000 0
Q ss_pred CCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhh-------h--hccccEEEecChhhhcHHHHHHH
Q 011724 172 FASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFE-------D--VKRVDFILCNTVHELESETISAL 242 (478)
Q Consensus 172 ~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~l~~~~~~le~~~~~~~ 242 (478)
.|.... .....+ ...+....+. ...+.+...+. . ....+..+..+.+.++ .+
T Consensus 134 ~~~~~~---~~~~~~----~~~~~~~~~~-------~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~-----~~ 194 (392)
T TIGR01426 134 SPAGEG---SAEEGA----IAERGLAEYV-------ARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQ-----PA 194 (392)
T ss_pred cccchh---hhhhhc----cccchhHHHH-------HHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhC-----CC
Confidence 010000 000000 0000000000 00111111111 0 0111223444444333 33
Q ss_pred HhcCC--ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEE
Q 011724 243 HQKQP--TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVL 320 (478)
Q Consensus 243 ~~~~p--~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 320 (478)
+..+| ++++||+...... ...|....+++++||+|+||.......+++.+++++.+.+.++++.+
T Consensus 195 ~~~~~~~~~~~Gp~~~~~~~-------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 261 (392)
T TIGR01426 195 GETFDDSFTFVGPCIGDRKE-------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSV 261 (392)
T ss_pred ccccCCCeEEECCCCCCccc-------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEE
Confidence 44554 9999998764321 11355555677899999999876666788999999999999999988
Q ss_pred CCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHHH
Q 011724 321 RPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRK 400 (478)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~ 400 (478)
+.. .....+. . .++|+.+.+|+||.++|+++++ ||||||.||++||+++|+|+|++|...||+.||.
T Consensus 262 g~~--------~~~~~~~-~--~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~ 328 (392)
T TIGR01426 262 GRG--------VDPADLG-E--LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTAR 328 (392)
T ss_pred CCC--------CChhHhc-c--CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHH
Confidence 654 1111222 2 6789999999999999999998 9999999999999999999999999999999999
Q ss_pred Hhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011724 401 LVKS----------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDV 459 (478)
Q Consensus 401 rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~ 459 (478)
++++ .+++++|.++|+++|. +++|+++++++++.+++. ++. ..+.++|+++
T Consensus 329 ~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~---~~~~~~~~~~l~~~~~~~----~~~-~~aa~~i~~~ 389 (392)
T TIGR01426 329 RIAELGLGRHLPPEEVTAEKLREAVLAVLS---DPRYAERLRKMRAEIREA----GGA-RRAADEIEGF 389 (392)
T ss_pred HHHHCCCEEEeccccCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHc----CCH-HHHHHHHHHh
Confidence 9988 6788999999999999 899999999999999873 343 4555555554
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=7e-41 Score=340.54 Aligned_cols=367 Identities=15% Similarity=0.135 Sum_probs=243.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCC-
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNF- 88 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~- 88 (478)
|||+|+++|+.||++|+++||++|++|||+|+|++++.+...++ .. |+.|..+++......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~---~~---------------G~~~~~~~~~~~~~~~ 62 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVE---AA---------------GLEFVPVGGDPDELLA 62 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHH---Hc---------------CCceeeCCCCHHHHHh
Confidence 79999999999999999999999999999999999999999998 66 788888775322100
Q ss_pred --C--------CCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHH
Q 011724 89 --D--------RSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLT 158 (478)
Q Consensus 89 --~--------~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 158 (478)
. ...........+.......++++++.++. .+||+||+|.+.+++..+|+++|||++.+++++.....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~ 140 (401)
T cd03784 63 SPERNAGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS 140 (401)
T ss_pred hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc
Confidence 0 00112222333344445555566665543 68999999998899999999999999999876543100
Q ss_pred HHHhhhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhc---CCchHHHHHHHHHhhhhc------cccEEEec
Q 011724 159 LYYHMDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQAT---DTSTVVHRIIQKAFEDVK------RVDFILCN 229 (478)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~l~~ 229 (478)
. ..|-.... ........... .......+.....+..-+ ..+..+..
T Consensus 141 ----------~--------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~ 195 (401)
T cd03784 141 ----------A--------------FPPPLGRA-NLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYG 195 (401)
T ss_pred ----------c--------------CCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEe
Confidence 0 00000000 00000000000 000011111111111100 01122222
Q ss_pred ChhhhcHHHHHHHHhcCC--ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccC-CHHHHHHHH
Q 011724 230 TVHELESETISALHQKQP--TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHA-SKNDIVEIA 306 (478)
Q Consensus 230 ~~~~le~~~~~~~~~~~p--~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~-~~~~~~~~~ 306 (478)
..+.+ ..+++.+| ..++|..+...+.. ... +.++..|++. ++++|||++||.... ...++..++
T Consensus 196 ~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~----~~~--~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~ 262 (401)
T cd03784 196 FSPAV-----LPPPPDWPRFDLVTGYGFRDVPYN----GPP--PPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDV 262 (401)
T ss_pred cCccc-----CCCCCCccccCcEeCCCCCCCCCC----CCC--CHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHH
Confidence 22211 12234444 66775433322211 122 5677888876 356899999999864 456788899
Q ss_pred HHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcce
Q 011724 307 LGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPL 386 (478)
Q Consensus 307 ~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~ 386 (478)
++++..+.++||.++.. .... .. .++|+++.+|+||.++|+++++ ||||||+||++||+++|||+
T Consensus 263 ~a~~~~~~~~i~~~g~~--------~~~~---~~--~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~ 327 (401)
T cd03784 263 EAVATLGQRAILSLGWG--------GLGA---ED--LPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQ 327 (401)
T ss_pred HHHHHcCCeEEEEccCc--------cccc---cC--CCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCE
Confidence 99999999999998755 1111 12 6789999999999999999999 99999999999999999999
Q ss_pred eccCcccchhHHHHHhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011724 387 LCFPLLTDQFTNRKLVKS----------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFI 456 (478)
Q Consensus 387 l~~P~~~DQ~~na~rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i 456 (478)
|++|+..||+.||+++++ .+++++|.++|+++++ ++ ++++++++++++++. + +...+.++|
T Consensus 328 v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~---~~-~~~~~~~~~~~~~~~----~-g~~~~~~~i 398 (401)
T cd03784 328 LVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLD---PP-SRRRAAALLRRIREE----D-GVPSAADVI 398 (401)
T ss_pred EeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhC---HH-HHHHHHHHHHHHHhc----c-CHHHHHHHH
Confidence 999999999999999998 5589999999999997 54 667777777777652 2 244556655
Q ss_pred HH
Q 011724 457 ND 458 (478)
Q Consensus 457 ~~ 458 (478)
+.
T Consensus 399 e~ 400 (401)
T cd03784 399 ER 400 (401)
T ss_pred hh
Confidence 53
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-39 Score=321.96 Aligned_cols=381 Identities=17% Similarity=0.252 Sum_probs=243.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCC-
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLN- 87 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 87 (478)
+|||+|+..|..||++|+++||++|.++||+|+|++++.+.+.++ +. ++.|..++....+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve---~a---------------g~~f~~~~~~~~~~~ 62 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVE---AA---------------GLAFVAYPIRDSELA 62 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHH---Hh---------------CcceeeccccCChhh
Confidence 599999999999999999999999999999999999999999999 66 65666555321111
Q ss_pred -CCCCCC-HHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHH-hhh
Q 011724 88 -FDRSLN-HDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYY-HMD 164 (478)
Q Consensus 88 -~~~~~~-~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~~ 164 (478)
.+.... ...+.. ....+.....++++.+.+ ..||+++.|.....+ .+++..++|++.......+.+.... +.+
T Consensus 63 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (406)
T COG1819 63 TEDGKFAGVKSFRR-LLQQFKKLIRELLELLRE--LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLP 138 (406)
T ss_pred hhhhhhhccchhHH-HhhhhhhhhHHHHHHHHh--cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcc
Confidence 101111 111111 222333334444444444 569999999755444 8999999999887654433221110 000
Q ss_pred hhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHh--hhhccccEEEecChhhhcHHHHHH-
Q 011724 165 LLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAF--EDVKRVDFILCNTVHELESETISA- 241 (478)
Q Consensus 165 ~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~le~~~~~~- 241 (478)
.....+.++ ....+ ++.. ...+.... ............. +.....-..+...-+.++....+.
T Consensus 139 ~~~~~~~~~--------~~~~~-~~~~----~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (406)
T COG1819 139 PVGIAGKLP--------IPLYP-LPPR----LVRPLIFA-RSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVL 204 (406)
T ss_pred ccccccccc--------ccccc-cChh----hccccccc-hhhhhhhhhhhhccccccccchHHHhcCCCCccccccccc
Confidence 000000000 00000 0000 00000000 0000000000000 000000000111111111111111
Q ss_pred -HH-hcCC--ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEE
Q 011724 242 -LH-QKQP--TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFV 317 (478)
Q Consensus 242 -~~-~~~p--~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i 317 (478)
+. ...| ..++||+..... .+...|. ..++++||+|+||.... .++++.+++++++++.++|
T Consensus 205 ~~~~~~~p~~~~~~~~~~~~~~------------~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi 269 (406)
T COG1819 205 FPPGDRLPFIGPYIGPLLGEAA------------NELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVI 269 (406)
T ss_pred cCCCCCCCCCcCcccccccccc------------ccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEE
Confidence 01 1224 667777765442 2233342 24567999999999976 8999999999999999999
Q ss_pred EEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhH
Q 011724 318 WVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFT 397 (478)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~ 397 (478)
+.+++. . ....+ .|+|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.
T Consensus 270 ~~~~~~--------~--~~~~~---~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~ 334 (406)
T COG1819 270 VSLGGA--------R--DTLVN---VPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPL 334 (406)
T ss_pred Eecccc--------c--ccccc---CCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhH
Confidence 998652 0 11112 7899999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 011724 398 NRKLVKS----------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQFLT 463 (478)
Q Consensus 398 na~rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~~~ 463 (478)
||.|+++ .++++.|+++|+++|+ ++.|+++++++++.+++. +| ...+.++|++....+
T Consensus 335 nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~---~~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~~~ 402 (406)
T COG1819 335 NAERVEELGAGIALPFEELTEERLRAAVNEVLA---DDSYRRAAERLAEEFKEE---DG--PAKAADLLEEFAREK 402 (406)
T ss_pred HHHHHHHcCCceecCcccCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHhcc
Confidence 9999999 6999999999999999 999999999999999984 33 567888888866544
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=8.6e-38 Score=326.59 Aligned_cols=400 Identities=26% Similarity=0.439 Sum_probs=248.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccC---CCCCeEEEEcCCCCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARK---AGLDIRYATVSDGLP 85 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~ 85 (478)
..+++++++|+.||++|+..||+.|+++||+||++++.......... .. .... ....+.+...+++.+
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~ 75 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SK--------SKSIKKINPPPFEFLTIPDGLP 75 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-cc--------ceeeeeeecChHHhhhhhhhhc
Confidence 36788888899999999999999999999999999998876655410 00 0000 000111111112222
Q ss_pred CCCCCC-CCHHHHHHHHHHHhhHHHHHHHHHhhcc-CCCccEEEEcCCchhhHHHHHHcC-CccEEEecchhHHHHHHHh
Q 011724 86 LNFDRS-LNHDQFMECLLHVFSAHVDELVGNLIQL-NPEMNCLVTDTFFVWSSMIAKKYN-LVNISFWTEPALVLTLYYH 162 (478)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~pD~vi~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~ 162 (478)
...... .........+...+...+.+....+... ..++|++|+|.+..+...++...+ |+..++.+..+.......+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~ 155 (496)
T KOG1192|consen 76 EGWEDDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP 155 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc
Confidence 211110 0111112333444555555533333221 133999999998667776776664 8888777666654332211
Q ss_pred hhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcC-CchHHH-------------HHHHH-Hh----------
Q 011724 163 MDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATD-TSTVVH-------------RIIQK-AF---------- 217 (478)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~-~~---------- 217 (478)
. +..++|........+.+.+..+.. ...... ..... ..
T Consensus 156 ~-----------------~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (496)
T KOG1192|consen 156 S-----------------PLSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTA 218 (496)
T ss_pred C-----------------cccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccH
Confidence 1 111333221101001111111110 000000 00000 00
Q ss_pred -hhhccccEEEecChhhhcHHHHHH-HHhcCC-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCC--ceEEEEec
Q 011724 218 -EDVKRVDFILCNTVHELESETISA-LHQKQP-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRG--SVLYVSFG 292 (478)
Q Consensus 218 -~~~~~~~~~l~~~~~~le~~~~~~-~~~~~p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~--~~Vyvs~G 292 (478)
+...+.+..++++...++ + +++..| ++.|||+....... . .....+|++..+.. ++||||||
T Consensus 219 ~~i~~~~~~~~ln~~~~~~-----~~~~~~~~~v~~IG~l~~~~~~~------~--~~~~~~wl~~~~~~~~~vvyvSfG 285 (496)
T KOG1192|consen 219 SGIIVNASFIFLNSNPLLD-----FEPRPLLPKVIPIGPLHVKDSKQ------K--SPLPLEWLDILDESRHSVVYISFG 285 (496)
T ss_pred HHhhhcCeEEEEccCcccC-----CCCCCCCCCceEECcEEecCccc------c--ccccHHHHHHHhhccCCeEEEECC
Confidence 112223344555544322 3 233346 99999999863211 1 11344555554443 89999999
Q ss_pred ccc---cCCHHHHHHHHHHHhhC-CCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhh-hhccCccee
Q 011724 293 SYA---HASKNDIVEIALGLLLS-EVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDV-ISHSAIGGF 367 (478)
Q Consensus 293 s~~---~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~v-L~~~~v~~~ 367 (478)
|.. ..+.+....++.+++.. +.+|+|++... ....+++++.++ .++||...+|+||.++ |.|+++++|
T Consensus 286 S~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~-----~~~~~~~~~~~~--~~~nV~~~~W~PQ~~lll~H~~v~~F 358 (496)
T KOG1192|consen 286 SMVNSADLPEEQKKELAKALESLQGVTFLWKYRPD-----DSIYFPEGLPNR--GRGNVVLSKWAPQNDLLLDHPAVGGF 358 (496)
T ss_pred cccccccCCHHHHHHHHHHHHhCCCceEEEEecCC-----cchhhhhcCCCC--CcCceEEecCCCcHHHhcCCCcCcEE
Confidence 998 78999999999999999 88899999865 111123444332 2578999999999998 599999999
Q ss_pred eeccCchhhHHHHhcCcceeccCcccchhHHHHHhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 011724 368 LTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS----------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKK 437 (478)
Q Consensus 368 ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~ 437 (478)
|||||+||++|++++|||||++|+++||+.||.++++ ..+.+++.+++.++++ +++|+++++++++.
T Consensus 359 vTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~---~~~y~~~~~~l~~~ 435 (496)
T KOG1192|consen 359 VTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILE---NEEYKEAAKRLSEI 435 (496)
T ss_pred EECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHc---ChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 5666669999999999 99999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHh
Q 011724 438 LENALSADGSSQKNFNQFINDVQF 461 (478)
Q Consensus 438 ~~~a~~~gg~~~~~~~~~i~~~~~ 461 (478)
+++. ..++ +.+.-.++...+
T Consensus 436 ~~~~---p~~~-~~~~~~~e~~~~ 455 (496)
T KOG1192|consen 436 LRDQ---PISP-ELAVKWVEFVAR 455 (496)
T ss_pred HHcC---CCCH-HHHHHHHHHHHh
Confidence 9862 3444 455533344444
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.93 E-value=1.7e-23 Score=207.70 Aligned_cols=309 Identities=17% Similarity=0.199 Sum_probs=196.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhh--hhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQ--ITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPL 86 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 86 (478)
|.||++.+.++.||++|.++||++|.++||+|+|+++....+. +. .. ++.+..++...
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~---~~---------------g~~~~~~~~~~-- 60 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIE---KE---------------NIPYYSISSGK-- 60 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCc---cc---------------CCcEEEEeccC--
Confidence 5688888888889999999999999999999999997665432 11 11 57777665321
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHH--HHHHHhhccCCCccEEEEcCCc--hhhHHHHHHcCCccEEEecchhHHHHHHHh
Q 011724 87 NFDRSLNHDQFMECLLHVFSAHVD--ELVGNLIQLNPEMNCLVTDTFF--VWSSMIAKKYNLVNISFWTEPALVLTLYYH 162 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~--~ll~~l~~~~~~pD~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 162 (478)
..+.... ..+..........++ .++++ .+||+||..... ..+..+|+.+++|++.....
T Consensus 61 -l~~~~~~-~~~~~~~~~~~~~~~~~~i~~~-----~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n---------- 123 (352)
T PRK12446 61 -LRRYFDL-KNIKDPFLVMKGVMDAYVRIRK-----LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD---------- 123 (352)
T ss_pred -cCCCchH-HHHHHHHHHHHHHHHHHHHHHh-----cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC----------
Confidence 1111122 223333333333332 23444 579999998744 34789999999999886321
Q ss_pred hhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHH
Q 011724 163 MDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISAL 242 (478)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~ 242 (478)
..|++. ..... +..+.+++ ++++.. ...
T Consensus 124 ---------------------~~~g~~-----------------nr~~~---------~~a~~v~~-~f~~~~----~~~ 151 (352)
T PRK12446 124 ---------------------MTPGLA-----------------NKIAL---------RFASKIFV-TFEEAA----KHL 151 (352)
T ss_pred ---------------------CCccHH-----------------HHHHH---------HhhCEEEE-Eccchh----hhC
Confidence 233321 11111 11222222 222110 011
Q ss_pred HhcCC-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHH-HHHHHHHHHhhCCCeEEEEE
Q 011724 243 HQKQP-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKN-DIVEIALGLLLSEVSFVWVL 320 (478)
Q Consensus 243 ~~~~p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~-~~~~~~~al~~~~~~~i~~~ 320 (478)
+ .. ++++|+.+.+.... .. .+...+.+.-.+++++|+|..||......+ .+..++..+.. +.+++|.+
T Consensus 152 ~--~~k~~~tG~Pvr~~~~~-----~~--~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~ 221 (352)
T PRK12446 152 P--KEKVIYTGSPVREEVLK-----GN--REKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLC 221 (352)
T ss_pred C--CCCeEEECCcCCccccc-----cc--chHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEe
Confidence 1 02 78899998764321 01 222222333334577999999999865543 34555555533 48889988
Q ss_pred CCCCCCCCccCCCChhhhhhhccCCCeEEeecc-C-hHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcc-----c
Q 011724 321 RPDIVSSDETDFLPVGFEEKIKISGRGLIVPWC-S-QIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLL-----T 393 (478)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~i-p-q~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~-----~ 393 (478)
+.. .+ +.... ...+..+.+|+ + ..++++.+|+ +|||||.+|+.|++++|+|+|++|+. .
T Consensus 222 G~~--------~~-~~~~~---~~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~ 287 (352)
T PRK12446 222 GKG--------NL-DDSLQ---NKEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRG 287 (352)
T ss_pred CCc--------hH-HHHHh---hcCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCc
Confidence 755 11 11111 11355667887 4 5789999999 99999999999999999999999984 4
Q ss_pred chhHHHHHhhc----------ccCHHHHHHHHHHHhCCCChH-HHHHHHHH
Q 011724 394 DQFTNRKLVKS----------SITKEEVSEKINRLMSGKSSD-ELRKNIKE 433 (478)
Q Consensus 394 DQ~~na~rv~~----------~~t~~~l~~~v~~ll~~~~~~-~~r~~a~~ 433 (478)
||..||..+++ .++++.|.+++.+++. |+ .+++++++
T Consensus 288 ~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~---~~~~~~~~~~~ 335 (352)
T PRK12446 288 DQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSH---NNEKYKTALKK 335 (352)
T ss_pred hHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHc---CHHHHHHHHHH
Confidence 89999999988 7789999999999997 65 44444433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.91 E-value=2.1e-22 Score=198.34 Aligned_cols=297 Identities=15% Similarity=0.194 Sum_probs=185.3
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCC
Q 011724 10 PHAIAICYP-LQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNF 88 (478)
Q Consensus 10 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 88 (478)
|||+|...+ |.||+.+.++||++| +||+|+|++.....+.+. .. +....++.-.....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~---~~----------------~~~~~~~~~~~~~~ 59 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLK---PR----------------FPVREIPGLGPIQE 59 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhc---cc----------------cCEEEccCceEecc
Confidence 899999877 779999999999999 599999999987766664 22 23344432211111
Q ss_pred CCCCCHHHHHHHH---HHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhhhh
Q 011724 89 DRSLNHDQFMECL---LHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDL 165 (478)
Q Consensus 89 ~~~~~~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 165 (478)
....+........ .......++++++.++. .+||+||+|. .+.+..+|+..|||++.+.......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~--------- 127 (318)
T PF13528_consen 60 NGRLDRWKTVRNNIRWLARLARRIRREIRWLRE--FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFL--------- 127 (318)
T ss_pred CCccchHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcc---------
Confidence 1111211111111 11223344445555554 6799999995 6667899999999999987644320
Q ss_pred hhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHhc
Q 011724 166 LRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQK 245 (478)
Q Consensus 166 ~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~ 245 (478)
.+.......... ......+.... .....+..+.-++. . +...
T Consensus 128 -------------------~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~l~~~~~-~-------~~~~ 169 (318)
T PF13528_consen 128 -------------------HPNFWLPWDQDF----------GRLIERYIDRY-HFPPADRRLALSFY-P-------PLPP 169 (318)
T ss_pred -------------------cccCCcchhhhH----------HHHHHHhhhhc-cCCcccceecCCcc-c-------cccc
Confidence 000000000000 01111111110 12333444433333 1 0111
Q ss_pred CC-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCC-CeEEEEECCC
Q 011724 246 QP-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSE-VSFVWVLRPD 323 (478)
Q Consensus 246 ~p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~ 323 (478)
.. ..++||+..+.... . + ..+++.|++++|..... .+++++++.+ .++++. +..
T Consensus 170 ~~~~~~~~p~~~~~~~~------~--~---------~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~ 225 (318)
T PF13528_consen 170 FFRVPFVGPIIRPEIRE------L--P---------PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN 225 (318)
T ss_pred cccccccCchhcccccc------c--C---------CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC
Confidence 11 66788887643211 1 0 12345799999988643 6677777766 566555 433
Q ss_pred CCCCCccCCCChhhhhhhccCCCeEEeecc--ChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCc--ccchhHHH
Q 011724 324 IVSSDETDFLPVGFEEKIKISGRGLIVPWC--SQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPL--LTDQFTNR 399 (478)
Q Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~nv~v~~~i--pq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~--~~DQ~~na 399 (478)
. .+. .++|+.+.+|. ...++|+.+++ +|||||+||++||+++|+|+|++|. ..+|..||
T Consensus 226 ---------~----~~~--~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a 288 (318)
T PF13528_consen 226 ---------A----ADP--RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNA 288 (318)
T ss_pred ---------c----ccc--cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHH
Confidence 0 111 46799999886 46789999999 9999999999999999999999999 78999999
Q ss_pred HHhhc----------ccCHHHHHHHHHHH
Q 011724 400 KLVKS----------SITKEEVSEKINRL 418 (478)
Q Consensus 400 ~rv~~----------~~t~~~l~~~v~~l 418 (478)
.++++ +++++.|.+.|+++
T Consensus 289 ~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 289 RKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 99999 77888888888764
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.87 E-value=2.1e-20 Score=184.10 Aligned_cols=281 Identities=14% Similarity=0.106 Sum_probs=155.4
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeE-EEEcCCCCCCCC
Q 011724 11 HAIAICYP-LQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIR-YATVSDGLPLNF 88 (478)
Q Consensus 11 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~ 88 (478)
||++...+ |.||+.|.++||++|++ ||+|+|+++......++ .. ++. +...|.......
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~---~~---------------~~~~~~~~p~~~~~~~ 61 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYIS---KY---------------GFKVFETFPGIKLKGE 61 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhh---hh---------------cCcceeccCCceEeec
Confidence 57776655 55999999999999999 99999999888555555 33 222 222221000000
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhhhhhhh
Q 011724 89 DRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLLRS 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 168 (478)
....+....+..........+....+.+++ .+||+||+| +.+.+..+|+.+|||++.+..+...
T Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~--~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~------------- 125 (321)
T TIGR00661 62 DGKVNIVKTLRNKEYSPKKAIRREINIIRE--YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT------------- 125 (321)
T ss_pred CCcCcHHHHHHhhccccHHHHHHHHHHHHh--cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh-------------
Confidence 000111111111001101223333333333 679999999 5777899999999999988642110
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHhcCC-
Q 011724 169 HGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQKQP- 247 (478)
Q Consensus 169 ~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~p- 247 (478)
..|+.. + . .....+.....+ ...++..+...+.... ...|
T Consensus 126 ---------------~~~~~~----~-~---------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~p~ 166 (321)
T TIGR00661 126 ---------------RYPLKT----D-L---------IVYPTMAALRIF--NERCERFIVPDYPFPY--------TICPK 166 (321)
T ss_pred ---------------cCCccc----c-h---------hHHHHHHHHHHh--ccccceEeeecCCCCC--------CCCcc
Confidence 012110 0 0 000111111111 1122222222222110 0001
Q ss_pred cc--ccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCC
Q 011724 248 TY--AIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIV 325 (478)
Q Consensus 248 ~~--~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 325 (478)
.. .-+|.. ..+..++... .++.|++.+|+... ..+++++.+.+. +.++++..
T Consensus 167 ~~~~~~~~~~---------------~~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~-- 220 (321)
T TIGR00661 167 IIKNMEGPLI---------------RYDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSY-- 220 (321)
T ss_pred ccccCCCccc---------------chhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCC--
Confidence 10 001111 1122223222 23457777777542 456777777653 23333222
Q ss_pred CCCccCCCChhhhhhhccCCCeEEeeccC--hHhhhhccCcceeeeccCchhhHHHHhcCcceeccCccc--chhHHHHH
Q 011724 326 SSDETDFLPVGFEEKIKISGRGLIVPWCS--QIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLT--DQFTNRKL 401 (478)
Q Consensus 326 ~~~~~~~l~~~~~~~~~~~~nv~v~~~ip--q~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~--DQ~~na~r 401 (478)
+.. ... .++|+.+.+|.| ..+.|+.+++ +|||||.+|++||+++|+|++++|... ||..||..
T Consensus 221 -----~~~----~~~--~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~ 287 (321)
T TIGR00661 221 -----EVA----KNS--YNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVK 287 (321)
T ss_pred -----CCC----ccc--cCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHH
Confidence 011 112 567999999997 5677888888 999999999999999999999999954 89999999
Q ss_pred hhc
Q 011724 402 VKS 404 (478)
Q Consensus 402 v~~ 404 (478)
+++
T Consensus 288 l~~ 290 (321)
T TIGR00661 288 LED 290 (321)
T ss_pred HHH
Confidence 998
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=1.2e-18 Score=171.20 Aligned_cols=312 Identities=15% Similarity=0.188 Sum_probs=194.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGF-TITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNF 88 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 88 (478)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+... .. . .++.++.++-+...+.
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l---~~-----------~--~~~~~~~I~~~~~~~~ 64 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFL---VK-----------Q--YGIEFELIPSGGLRRK 64 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeee---cc-----------c--cCceEEEEeccccccc
Confidence 57888888899999999999999999999 588886655444432 21 0 1677777664432221
Q ss_pred CCCCCHHHHHHHHHHHhhH--HHHHHHHHhhccCCCccEEEEcCCc--hhhHHHHHHcCCccEEEecchhHHHHHHHhhh
Q 011724 89 DRSLNHDQFMECLLHVFSA--HVDELVGNLIQLNPEMNCLVTDTFF--VWSSMIAKKYNLVNISFWTEPALVLTLYYHMD 164 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~--~~~~ll~~l~~~~~~pD~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 164 (478)
.... .+...+..+.. ....++++ .+||+||....+ ..+..+|..+|||++..-.
T Consensus 65 ---~~~~-~~~~~~~~~~~~~~a~~il~~-----~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq------------- 122 (357)
T COG0707 65 ---GSLK-LLKAPFKLLKGVLQARKILKK-----LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ------------- 122 (357)
T ss_pred ---CcHH-HHHHHHHHHHHHHHHHHHHHH-----cCCCEEEecCCccccHHHHHHHhCCCCEEEEec-------------
Confidence 1111 22222222222 23445565 469999996655 6678999999999998632
Q ss_pred hhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHh
Q 011724 165 LLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQ 244 (478)
Q Consensus 165 ~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~ 244 (478)
++.||+.+. +... .++.+ ..+++..+ .
T Consensus 123 ------------------n~~~G~ank-----------------~~~~---------~a~~V-~~~f~~~~--------~ 149 (357)
T COG0707 123 ------------------NAVPGLANK-----------------ILSK---------FAKKV-ASAFPKLE--------A 149 (357)
T ss_pred ------------------CCCcchhHH-----------------HhHH---------hhcee-eecccccc--------c
Confidence 245554211 0000 11111 11111100 1
Q ss_pred cC-C--ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHH-HHHHHHHHHhhCCCeEEEEE
Q 011724 245 KQ-P--TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKN-DIVEIALGLLLSEVSFVWVL 320 (478)
Q Consensus 245 ~~-p--~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~-~~~~~~~al~~~~~~~i~~~ 320 (478)
.. + ++.+|-.+...... . +..-..+..+. ++++|+|.-||......+ .+...+..+.+ ..++++.+
T Consensus 150 ~~~~~~~~~tG~Pvr~~~~~------~--~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~ 219 (357)
T COG0707 150 GVKPENVVVTGIPVRPEFEE------L--PAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQT 219 (357)
T ss_pred cCCCCceEEecCcccHHhhc------c--chhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEc
Confidence 11 1 55666665543211 1 11111222222 567999999999864433 34444444444 57888888
Q ss_pred CCCCCCCCccCCCChhhhhhhccCCC-eEEeeccC-hHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcc----cc
Q 011724 321 RPDIVSSDETDFLPVGFEEKIKISGR-GLIVPWCS-QIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLL----TD 394 (478)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~~~~~~~n-v~v~~~ip-q~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~----~D 394 (478)
+.+ .+ +.....+ ...+ +.+..|++ ...+++.+|+ +||++|.+|+.|++++|+|+|.+|.- .|
T Consensus 220 G~~--------~~-~~~~~~~-~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~ 287 (357)
T COG0707 220 GKN--------DL-EELKSAY-NELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGH 287 (357)
T ss_pred Ccc--------hH-HHHHHHH-hhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccch
Confidence 766 11 1222221 1122 77779996 5779999999 99999999999999999999999983 38
Q ss_pred hhHHHHHhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 011724 395 QFTNRKLVKS----------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLEN 440 (478)
Q Consensus 395 Q~~na~rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~ 440 (478)
|..||..+++ .+|.+++.+.|.++++ + .++..+|++..++
T Consensus 288 Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~---~---~~~l~~m~~~a~~ 337 (357)
T COG0707 288 QEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLS---N---PEKLKAMAENAKK 337 (357)
T ss_pred HHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhc---C---HHHHHHHHHHHHh
Confidence 9999999999 8899999999999998 5 4555666666655
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.79 E-value=7.8e-17 Score=161.33 Aligned_cols=315 Identities=15% Similarity=0.135 Sum_probs=182.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh--hhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH--HQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPL 86 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 86 (478)
||||+|...+..||...++.||++|.++||+|++++..... ...+ .. ++.++.++..-..
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~---~~---------------g~~~~~~~~~~~~ 62 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVP---KA---------------GIEFHFIPSGGLR 62 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccc---cC---------------CCcEEEEeccCcC
Confidence 69999999888899999999999999999999999986531 1222 12 5566655422100
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCC--chhhHHHHHHcCCccEEEecchhHHHHHHHhhh
Q 011724 87 NFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTF--FVWSSMIAKKYNLVNISFWTEPALVLTLYYHMD 164 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 164 (478)
. ......+...... ...+..+.+.+++ .+||+|++... ...+..+++..++|+|.....
T Consensus 63 ---~-~~~~~~l~~~~~~-~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~------------ 123 (357)
T PRK00726 63 ---R-KGSLANLKAPFKL-LKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN------------ 123 (357)
T ss_pred ---C-CChHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC------------
Confidence 0 1111111111111 1112223333333 56999999963 245567788889999864210
Q ss_pred hhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHh
Q 011724 165 LLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQ 244 (478)
Q Consensus 165 ~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~ 244 (478)
..++ ...+++. ..++.+++.+...+. .
T Consensus 124 -------------------~~~~--------------------~~~r~~~------~~~d~ii~~~~~~~~-------~- 150 (357)
T PRK00726 124 -------------------AVPG--------------------LANKLLA------RFAKKVATAFPGAFP-------E- 150 (357)
T ss_pred -------------------CCcc--------------------HHHHHHH------HHhchheECchhhhh-------c-
Confidence 0110 0001111 123334433322110 1
Q ss_pred cC-C-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCC--eEEEEE
Q 011724 245 KQ-P-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEV--SFVWVL 320 (478)
Q Consensus 245 ~~-p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~~~ 320 (478)
.. . ++++|+.+...... + .. ..+-+...++.++|++..|+... ......+.+++.+... .+++.+
T Consensus 151 ~~~~~i~vi~n~v~~~~~~-----~---~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~ 219 (357)
T PRK00726 151 FFKPKAVVTGNPVREEILA-----L---AA-PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQT 219 (357)
T ss_pred cCCCCEEEECCCCChHhhc-----c---cc-hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEc
Confidence 12 2 77788776432211 0 01 00111212334566665555421 1222233355555332 445555
Q ss_pred CCCCCCCCccCCCChhhhhhhccCCCeEEeecc-ChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCc----ccch
Q 011724 321 RPDIVSSDETDFLPVGFEEKIKISGRGLIVPWC-SQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPL----LTDQ 395 (478)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~i-pq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~----~~DQ 395 (478)
+.+ .. +.+.+.++..-++.+.+|+ +..++++.+++ +|+|+|.++++||+++|+|+|++|. ..||
T Consensus 220 G~g--------~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~ 288 (357)
T PRK00726 220 GKG--------DL-EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQ 288 (357)
T ss_pred CCC--------cH-HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcH
Confidence 544 11 2232222112237788999 45789999999 9999999999999999999999997 3689
Q ss_pred hHHHHHhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 011724 396 FTNRKLVKS----------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKL 438 (478)
Q Consensus 396 ~~na~rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~ 438 (478)
..|+..+.+ .+++++|++++.++++ +++.+++..+-++++
T Consensus 289 ~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 289 TANARALVDAGAALLIPQSDLTPEKLAEKLLELLS---DPERLEAMAEAARAL 338 (357)
T ss_pred HHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHc---CHHHHHHHHHHHHhc
Confidence 999999977 4469999999999998 777776555544443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.73 E-value=1.9e-15 Score=150.74 Aligned_cols=310 Identities=15% Similarity=0.135 Sum_probs=179.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCC
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDR 90 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 90 (478)
||++...+..||....+.||+.|.++||+|++++......... .. ..++++..++......
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~~--- 61 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARL---VP-------------KAGIPLHTIPVGGLRR--- 61 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhc---cc-------------ccCCceEEEEecCcCC---
Confidence 5888888888999999999999999999999998764321111 00 0146666555321111
Q ss_pred CCCHHHHHHHHHHH--hhHHHHHHHHHhhccCCCccEEEEcCC--chhhHHHHHHcCCccEEEecchhHHHHHHHhhhhh
Q 011724 91 SLNHDQFMECLLHV--FSAHVDELVGNLIQLNPEMNCLVTDTF--FVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLL 166 (478)
Q Consensus 91 ~~~~~~~~~~~~~~--~~~~~~~ll~~l~~~~~~pD~vi~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 166 (478)
......+...... ....+..++++ .+||+|++... ...+..+|+..|+|++.....
T Consensus 62 -~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~-------------- 121 (350)
T cd03785 62 -KGSLKKLKAPFKLLKGVLQARKILKK-----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN-------------- 121 (350)
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHh-----cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC--------------
Confidence 0111111111111 11123334443 56999999753 345677889999999853110
Q ss_pred hhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHhcC
Q 011724 167 RSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQKQ 246 (478)
Q Consensus 167 ~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~ 246 (478)
..++ ..+++. ....+.+++.+....+ + ..
T Consensus 122 -----------------~~~~---------------------~~~~~~-----~~~~~~vi~~s~~~~~-----~---~~ 150 (350)
T cd03785 122 -----------------AVPG---------------------LANRLL-----ARFADRVALSFPETAK-----Y---FP 150 (350)
T ss_pred -----------------CCcc---------------------HHHHHH-----HHhhCEEEEcchhhhh-----c---CC
Confidence 0110 001110 1235666665544322 1 11
Q ss_pred C--ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCC-HHHHHHHHHHHhhCCCeEEEEECCC
Q 011724 247 P--TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHAS-KNDIVEIALGLLLSEVSFVWVLRPD 323 (478)
Q Consensus 247 p--~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~ 323 (478)
+ +.++|..+...... . ... .+.+...+++++|++..|+..... .+.+...+..+.+.+..+++.++.+
T Consensus 151 ~~~~~~i~n~v~~~~~~------~--~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g 221 (350)
T cd03785 151 KDKAVVTGNPVREEILA------L--DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG 221 (350)
T ss_pred CCcEEEECCCCchHHhh------h--hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc
Confidence 2 66777665432111 0 111 222232334456666666654211 1223333444443344555565543
Q ss_pred CCCCCccCCCChhhhhhh-ccCCCeEEeecc-ChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCc----ccchhH
Q 011724 324 IVSSDETDFLPVGFEEKI-KISGRGLIVPWC-SQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPL----LTDQFT 397 (478)
Q Consensus 324 ~~~~~~~~~l~~~~~~~~-~~~~nv~v~~~i-pq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~----~~DQ~~ 397 (478)
.. +.+.+.+ +..+|+.+.+|+ +...+|+.+++ +|+++|.+++.||+++|+|+|+.|. ..+|..
T Consensus 222 -----~~----~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~ 290 (350)
T cd03785 222 -----DL----EEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTA 290 (350)
T ss_pred -----cH----HHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHH
Confidence 11 2222221 024689999998 56789999999 9999999999999999999999986 357889
Q ss_pred HHHHhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011724 398 NRKLVKS----------SITKEEVSEKINRLMSGKSSDELRKNIKE 433 (478)
Q Consensus 398 na~rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~ 433 (478)
|+..+.+ ..+.+++.+++.+++. +++.+++..+
T Consensus 291 ~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~---~~~~~~~~~~ 333 (350)
T cd03785 291 NARALVKAGAAVLIPQEELTPERLAAALLELLS---DPERLKAMAE 333 (350)
T ss_pred hHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 9998876 2489999999999998 7665554333
No 34
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.71 E-value=2.7e-15 Score=144.35 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=78.6
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhC--CCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccCh-Hhhhhc
Q 011724 285 SVLYVSFGSYAHASKNDIVEIALGLLLS--EVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQ-IDVISH 361 (478)
Q Consensus 285 ~~Vyvs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq-~~vL~~ 361 (478)
+.|++++|..... .....+++++.+. +.++.++++... ...+.+.+.....+|+.+..|+++ ..+|+.
T Consensus 171 ~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~-------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~ 241 (279)
T TIGR03590 171 RRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSN-------PNLDELKKFAKEYPNIILFIDVENMAELMNE 241 (279)
T ss_pred CeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCC-------cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHH
Confidence 4689999966532 2455666777663 457777777540 111223222224568999999987 589999
Q ss_pred cCcceeeeccCchhhHHHHhcCcceeccCcccchhHHHHH
Q 011724 362 SAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKL 401 (478)
Q Consensus 362 ~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~r 401 (478)
+++ +||+|| +|++|++++|+|+|++|...+|..||..
T Consensus 242 aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 242 ADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999 999999 9999999999999999999999999975
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.70 E-value=3.1e-15 Score=140.56 Aligned_cols=325 Identities=14% Similarity=0.168 Sum_probs=193.2
Q ss_pred CCCCCEEEEEcC--CCccCHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcC
Q 011724 6 KKPKPHAIAICY--PLQGHVIPFVNLALKLASS--GFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVS 81 (478)
Q Consensus 6 ~~~~~~il~~~~--~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (478)
..+++||+|++. .|.||+..++.||+.|++. |.+|++++......-.. . -.++.|+.+|
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~---~--------------~~gVd~V~LP 68 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP---G--------------PAGVDFVKLP 68 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC---C--------------cccCceEecC
Confidence 456789999994 4679999999999999997 99999999877554443 2 1289999998
Q ss_pred CCCCCC------CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhH
Q 011724 82 DGLPLN------FDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPAL 155 (478)
Q Consensus 82 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 155 (478)
.-...+ .+...+..++.+ .-...+-..++. ++||++|+|.+-++. .-+.+ |+
T Consensus 69 sl~k~~~G~~~~~d~~~~l~e~~~----~Rs~lil~t~~~-----fkPDi~IVd~~P~Gl--r~EL~--pt--------- 126 (400)
T COG4671 69 SLIKGDNGEYGLVDLDGDLEETKK----LRSQLILSTAET-----FKPDIFIVDKFPFGL--RFELL--PT--------- 126 (400)
T ss_pred ceEecCCCceeeeecCCCHHHHHH----HHHHHHHHHHHh-----cCCCEEEEeccccch--hhhhh--HH---------
Confidence 432111 222233333322 222222333333 679999999755441 00100 10
Q ss_pred HHHHHHhhhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhc
Q 011724 156 VLTLYYHMDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELE 235 (478)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 235 (478)
..+ +...+ . .+-+.....+|........+......+.+.++ .|.+++...+++-
T Consensus 127 --L~y-----l~~~~-----------t--~~vL~lr~i~D~p~~~~~~w~~~~~~~~I~r~------yD~V~v~GdP~f~ 180 (400)
T COG4671 127 --LEY-----LKTTG-----------T--RLVLGLRSIRDIPQELEADWRRAETVRLINRF------YDLVLVYGDPDFY 180 (400)
T ss_pred --HHH-----HhhcC-----------C--cceeehHhhhhchhhhccchhhhHHHHHHHHh------heEEEEecCcccc
Confidence 000 11110 0 00000011122222222222222223333222 2556665555554
Q ss_pred HH--HHHHHHhcCC-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhh-
Q 011724 236 SE--TISALHQKQP-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLL- 311 (478)
Q Consensus 236 ~~--~~~~~~~~~p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~- 311 (478)
.+ .++++....- +.|+|.+... -+- .++ + +... +++-.|.||-|.... ..+++...++|-..
T Consensus 181 d~~~~~~~~~~i~~k~~ytG~vq~~-~~~----~~~--p-----~~~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l 246 (400)
T COG4671 181 DPLTEFPFAPAIRAKMRYTGFVQRS-LPH----LPL--P-----PHEA-PEGFDILVSVGGGAD-GAELIETALAAAQLL 246 (400)
T ss_pred ChhhcCCccHhhhhheeEeEEeecc-CcC----CCC--C-----CcCC-CccceEEEecCCChh-hHHHHHHHHHHhhhC
Confidence 22 2223222223 8899999321 111 111 1 0111 344468888887653 45666666666555
Q ss_pred CCCe--EEEEECCCCCCCCccCCCChhhhhhh--ccC--CCeEEeeccCh-HhhhhccCcceeeeccCchhhHHHHhcCc
Q 011724 312 SEVS--FVWVLRPDIVSSDETDFLPVGFEEKI--KIS--GRGLIVPWCSQ-IDVISHSAIGGFLTHCGWNSIQESIWCSV 384 (478)
Q Consensus 312 ~~~~--~i~~~~~~~~~~~~~~~l~~~~~~~~--~~~--~nv~v~~~ipq-~~vL~~~~v~~~ItHGG~~s~~Eal~~Gv 384 (478)
.+.+ .+++++.. +|+...+++ ..+ +++.+..|-.+ ..++..++. +|+-||+||++|-|++|+
T Consensus 247 ~~l~~~~~ivtGP~---------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k 315 (400)
T COG4671 247 AGLNHKWLIVTGPF---------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGK 315 (400)
T ss_pred CCCCcceEEEeCCC---------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCC
Confidence 3444 45555533 665544432 134 68999999865 679989998 999999999999999999
Q ss_pred ceeccCccc---chhHHHHHhhc----------ccCHHHHHHHHHHHhC
Q 011724 385 PLLCFPLLT---DQFTNRKLVKS----------SITKEEVSEKINRLMS 420 (478)
Q Consensus 385 P~l~~P~~~---DQ~~na~rv~~----------~~t~~~l~~~v~~ll~ 420 (478)
|.|++|... +|-.-|.|+++ .+++..++++|...+.
T Consensus 316 ~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 316 PALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred ceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhccc
Confidence 999999954 89999999998 8999999999999997
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.67 E-value=6.3e-14 Score=139.69 Aligned_cols=306 Identities=13% Similarity=0.150 Sum_probs=164.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhh-h-hhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHH-Q-ITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLN 87 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 87 (478)
|||+|++.+..||+.....||++|.++||+|++++.+.... . .+ .. ++.++.++......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~---~~---------------g~~~~~i~~~~~~~ 62 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVP---KA---------------GIEFYFIPVGGLRR 62 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccc---cC---------------CCceEEEeccCcCC
Confidence 58999999999999988899999999999999998754211 1 11 11 56666554321111
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCc--hhhHHHHHHcCCccEEEecchhHHHHHHHhhhh
Q 011724 88 FDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFF--VWSSMIAKKYNLVNISFWTEPALVLTLYYHMDL 165 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 165 (478)
......+...... ...+..+.+.+++ .+||+|++.... ..+..+++.+++|.+....
T Consensus 63 ----~~~~~~l~~~~~~-~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-------------- 121 (348)
T TIGR01133 63 ----KGSFRLIKTPLKL-LKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-------------- 121 (348)
T ss_pred ----CChHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC--------------
Confidence 1122222211111 1112223233333 579999998543 3455678888999874310
Q ss_pred hhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHhc
Q 011724 166 LRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQK 245 (478)
Q Consensus 166 ~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~ 245 (478)
. ..++ ...+++ .+..+.+++.+...-+ +.
T Consensus 122 ---------------~--~~~~--------------------~~~~~~------~~~~d~ii~~~~~~~~-----~~--- 150 (348)
T TIGR01133 122 ---------------N--AVPG--------------------LTNKLL------SRFAKKVLISFPGAKD-----HF--- 150 (348)
T ss_pred ---------------C--CCcc--------------------HHHHHH------HHHhCeeEECchhHhh-----cC---
Confidence 0 0010 000111 1234555554432111 10
Q ss_pred CCccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHh---hCCCeEEEEECC
Q 011724 246 QPTYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLL---LSEVSFVWVLRP 322 (478)
Q Consensus 246 ~p~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~---~~~~~~i~~~~~ 322 (478)
..+++|..+...... . +.. .+.+...++.++|.+..|+... ......+.++++ +.+.++++..++
T Consensus 151 -~~~~i~n~v~~~~~~------~--~~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~ 218 (348)
T TIGR01133 151 -EAVLVGNPVRQEIRS------L--PVP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGK 218 (348)
T ss_pred -CceEEcCCcCHHHhc------c--cch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCc
Confidence 123444443221100 0 000 1122222233444443345432 222222233433 344566654443
Q ss_pred CCCCCCccCCCChhhhhhhccCCCeEEeecc--ChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcc---cchhH
Q 011724 323 DIVSSDETDFLPVGFEEKIKISGRGLIVPWC--SQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLL---TDQFT 397 (478)
Q Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~i--pq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~---~DQ~~ 397 (478)
. .. +.+.+.++..+-..++.|. +...+|+.+|+ +|+++|.+++.||+++|+|+|++|.. .+|..
T Consensus 219 ~--------~~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~ 287 (348)
T TIGR01133 219 N--------DL-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYY 287 (348)
T ss_pred c--------hH-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhh
Confidence 3 11 2222211111111223333 56789999999 99999988999999999999999863 46788
Q ss_pred HHHHhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHH
Q 011724 398 NRKLVKS----------SITKEEVSEKINRLMSGKSSDELRKNI 431 (478)
Q Consensus 398 na~rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a 431 (478)
|+..+++ +.+.++|.+++.++++ |++.+++.
T Consensus 288 ~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~---~~~~~~~~ 328 (348)
T TIGR01133 288 NAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL---DPANLEAM 328 (348)
T ss_pred HHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc---CHHHHHHH
Confidence 8888876 3469999999999998 77665433
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.65 E-value=2.8e-14 Score=143.74 Aligned_cols=343 Identities=13% Similarity=0.087 Sum_probs=186.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFD 89 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 89 (478)
.||+|.+.++.||+.|. +||++|+++|++|+|++.... ..+ +.|.+ . .+.+..++-
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~---~~g~~---------~--~~~~~~l~v------- 61 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMA---AEGCE---------V--LYSMEELSV------- 61 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHH---hCcCc---------c--ccChHHhhh-------
Confidence 57888888888999999 999999999999999997643 343 33110 0 233332221
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCc-hhhHH--HHHHcCCccEEEecchhHHHHHHHhhhhh
Q 011724 90 RSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFF-VWSSM--IAKKYNLVNISFWTEPALVLTLYYHMDLL 166 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~-~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 166 (478)
..+.+.+..+... ...+..+.+.+++ .+||+||.-.+. +.... +|+.+|||++.+.+ +-. +
T Consensus 62 --~G~~~~l~~~~~~-~~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P~~-w--------- 125 (385)
T TIGR00215 62 --MGLREVLGRLGRL-LKIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-PQV-W--------- 125 (385)
T ss_pred --ccHHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-CcH-h---------
Confidence 1111222222111 1122233333333 679999985432 33234 89999999997641 000 0
Q ss_pred hhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHhc-
Q 011724 167 RSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQK- 245 (478)
Q Consensus 167 ~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~- 245 (478)
-.++. . .+.+. ..+|.+++.+.. +.. +.+..
T Consensus 126 -----------------aw~~~-----------------~---~r~l~------~~~d~v~~~~~~--e~~---~~~~~g 157 (385)
T TIGR00215 126 -----------------AWRKW-----------------R---AKKIE------KATDFLLAILPF--EKA---FYQKKN 157 (385)
T ss_pred -----------------hcCcc-----------------h---HHHHH------HHHhHhhccCCC--cHH---HHHhcC
Confidence 00000 0 01111 122233332222 211 22222
Q ss_pred CCccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhC-----CCeEEEEE
Q 011724 246 QPTYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLS-----EVSFVWVL 320 (478)
Q Consensus 246 ~p~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~ 320 (478)
.+..+||....+.... ..+. ..+..+-+.-.+++++|.+-.||....-......+++++... +.++++..
T Consensus 158 ~~~~~vGnPv~~~~~~---~~~~--~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~ 232 (385)
T TIGR00215 158 VPCRFVGHPLLDAIPL---YKPD--RKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPV 232 (385)
T ss_pred CCEEEECCchhhhccc---cCCC--HHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 2355688666432210 0011 223333333334566788777777643233344555554432 33455544
Q ss_pred CCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceecc----Cccc---
Q 011724 321 RPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCF----PLLT--- 393 (478)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~----P~~~--- 393 (478)
.+.. ..+.+ +.+.+.+.....+.+..+ +...+++.+|+ +|+-.|..|+ |++++|+|+|++ |+..
T Consensus 233 ~~~~----~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~ 303 (385)
T TIGR00215 233 VNFK----RRLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIA 303 (385)
T ss_pred CCch----hHHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHH
Confidence 3320 00000 111121111223443332 44568999999 9999999988 999999999999 7732
Q ss_pred ------chhHHHHHhhc----------ccCHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 011724 394 ------DQFTNRKLVKS----------SITKEEVSEKINRLMSGKSSD----ELRKNIKEVRKKLENALSADGSSQKNFN 453 (478)
Q Consensus 394 ------DQ~~na~rv~~----------~~t~~~l~~~v~~ll~~~~~~----~~r~~a~~l~~~~~~a~~~gg~~~~~~~ 453 (478)
+|..|++.+.. .+|++.|.+.+.++|. |+ +++++.++--+++++...++|.+.+.++
T Consensus 304 ~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~ 380 (385)
T TIGR00215 304 RRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLE---NGLKAYKEMHRERQFFEELRQRIYCNADSERAAQ 380 (385)
T ss_pred HHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhc---CCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 26778887776 8999999999999998 66 6666655555555555544566666665
Q ss_pred HHHH
Q 011724 454 QFIN 457 (478)
Q Consensus 454 ~~i~ 457 (478)
.+++
T Consensus 381 ~i~~ 384 (385)
T TIGR00215 381 AVLE 384 (385)
T ss_pred HHhh
Confidence 5543
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.62 E-value=7e-13 Score=133.94 Aligned_cols=136 Identities=16% Similarity=0.215 Sum_probs=95.1
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhC-CCeEEEEECCCCCCCCccCCCChhhhhhh-ccCCCeEEeeccCh-Hhh
Q 011724 282 PRGSVLYVSFGSYAHASKNDIVEIALGLLLS-EVSFVWVLRPDIVSSDETDFLPVGFEEKI-KISGRGLIVPWCSQ-IDV 358 (478)
Q Consensus 282 ~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~~-~~~~nv~v~~~ipq-~~v 358 (478)
+++++|++..|+.... ..+..+++++.+. +.+++++.+.+. .+-+.+.+.. ..++|+.+.+|+++ .++
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~-------~~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE-------ALKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH-------HHHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 3456777777776532 2345566677654 566766665330 0111221110 13468999999986 579
Q ss_pred hhccCcceeeeccCchhhHHHHhcCcceecc-CcccchhHHHHHhhc------ccCHHHHHHHHHHHhCCCChHHHHHHH
Q 011724 359 ISHSAIGGFLTHCGWNSIQESIWCSVPLLCF-PLLTDQFTNRKLVKS------SITKEEVSEKINRLMSGKSSDELRKNI 431 (478)
Q Consensus 359 L~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~-P~~~DQ~~na~rv~~------~~t~~~l~~~v~~ll~~~~~~~~r~~a 431 (478)
++.+|+ +|+.+|..|+.||+++|+|+|+. |....|..|+..+.+ .-+.+++.++|.++++ |++.+++.
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~---~~~~~~~m 345 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQ---DDMKLLQM 345 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHC---CHHHHHHH
Confidence 999999 99999988999999999999985 667778889887765 4578999999999998 76655443
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.53 E-value=6.2e-12 Score=127.01 Aligned_cols=339 Identities=13% Similarity=0.106 Sum_probs=169.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNF 88 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 88 (478)
||||+|...+..||+.|.. ++++|+++++++.+++.... ..+ ..+. +. .+.++.++-.
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~---~~~~---------~~--~~~~~~l~~~----- 58 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQ---AAGC---------ES--LFDMEELAVM----- 58 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHH---hCCC---------cc--ccCHHHhhhc-----
Confidence 4799999999999999999 99999998888887775442 233 2210 00 2222222211
Q ss_pred CCCCCHHHHHHHHHHHh--hHHHHHHHHHhhccCCCccEEEEcCC-chhh--HHHHHHcCCccEEEecchhHHHHHHHhh
Q 011724 89 DRSLNHDQFMECLLHVF--SAHVDELVGNLIQLNPEMNCLVTDTF-FVWS--SMIAKKYNLVNISFWTEPALVLTLYYHM 163 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~~~~pD~vi~D~~-~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 163 (478)
.+.+.+....... ...+..+++. .+||+|++-.+ +.+. ...|+..|||++.+.....
T Consensus 59 ----g~~~~~~~~~~~~~~~~~~~~~l~~-----~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~--------- 120 (380)
T PRK00025 59 ----GLVEVLPRLPRLLKIRRRLKRRLLA-----EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSV--------- 120 (380)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCch---------
Confidence 1112222211111 1123334444 56999887432 2333 3347788999886521100
Q ss_pred hhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHH
Q 011724 164 DLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALH 243 (478)
Q Consensus 164 ~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~ 243 (478)
..+.++ ..+.+ ...++.+++.+....+ +..
T Consensus 121 ------------------~~~~~~---------------------~~~~~------~~~~d~i~~~~~~~~~-----~~~ 150 (380)
T PRK00025 121 ------------------WAWRQG---------------------RAFKI------AKATDHVLALFPFEAA-----FYD 150 (380)
T ss_pred ------------------hhcCch---------------------HHHHH------HHHHhhheeCCccCHH-----HHH
Confidence 000010 00111 1123444443322111 222
Q ss_pred hc-CCccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhh---C--CCeEE
Q 011724 244 QK-QPTYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLL---S--EVSFV 317 (478)
Q Consensus 244 ~~-~p~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~---~--~~~~i 317 (478)
.. .++.++|......... .+. ..+..+.+.-.+++++|.+..||...........++++++. . +.+++
T Consensus 151 ~~g~~~~~~G~p~~~~~~~----~~~--~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~i 224 (380)
T PRK00025 151 KLGVPVTFVGHPLADAIPL----LPD--RAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFV 224 (380)
T ss_pred hcCCCeEEECcCHHHhccc----ccC--hHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 21 1355667444321100 001 23333333332345566666666543222223444444432 2 34566
Q ss_pred EEECCCCCCCCccCCCChhhhhhhc-c-CCCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcc---
Q 011724 318 WVLRPDIVSSDETDFLPVGFEEKIK-I-SGRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLL--- 392 (478)
Q Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~--- 392 (478)
++.++. ...+.+.+.+. . .-++.+.. -....+++.+|+ +|+-+|.+++ ||+++|+|+|+.|..
T Consensus 225 i~~~~~--------~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~ 292 (380)
T PRK00025 225 LPLVNP--------KRREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPL 292 (380)
T ss_pred EecCCh--------hhHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHH
Confidence 665422 11122222110 1 22344432 134678999999 9999998887 999999999988542
Q ss_pred ---cchh--HH-H----HHhh----------cccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 011724 393 ---TDQF--TN-R----KLVK----------SSITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNF 452 (478)
Q Consensus 393 ---~DQ~--~n-a----~rv~----------~~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~ 452 (478)
.+++ .| + ..+. ...++++|.+++.++++ |++.+++..+-.+.+++.. ..+.+.+.+
T Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~-~~~a~~~~~ 368 (380)
T PRK00025 293 TFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLA---DGARRQALLEGFTELHQQL-RCGADERAA 368 (380)
T ss_pred HHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHh-CCCHHHHHH
Confidence 2222 22 1 1111 15788999999999999 7776655444443344332 234444444
Q ss_pred HHHHHHH
Q 011724 453 NQFINDV 459 (478)
Q Consensus 453 ~~~i~~~ 459 (478)
+.+++.+
T Consensus 369 ~~i~~~~ 375 (380)
T PRK00025 369 QAVLELL 375 (380)
T ss_pred HHHHHHh
Confidence 4444433
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.44 E-value=2.6e-11 Score=122.84 Aligned_cols=161 Identities=15% Similarity=0.228 Sum_probs=105.5
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHH-hh-CCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccCh-Hhh
Q 011724 282 PRGSVLYVSFGSYAHASKNDIVEIALGL-LL-SEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQ-IDV 358 (478)
Q Consensus 282 ~~~~~Vyvs~Gs~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq-~~v 358 (478)
+++++|++..|+.... ..+..+++++ +. .+.+++++++.+ +.+-+.+...+...+++.+.+|+++ .++
T Consensus 200 ~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~-------~~l~~~l~~~~~~~~~v~~~G~~~~~~~~ 270 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKS-------KELKRSLTAKFKSNENVLILGYTKHMNEW 270 (391)
T ss_pred CCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCC-------HHHHHHHHHHhccCCCeEEEeccchHHHH
Confidence 3456788888887621 2334444443 22 345666665543 0011122222113457888899975 579
Q ss_pred hhccCcceeeeccCchhhHHHHhcCcceecc-CcccchhHHHHHhhc------ccCHHHHHHHHHHHhCCCChHHHHHHH
Q 011724 359 ISHSAIGGFLTHCGWNSIQESIWCSVPLLCF-PLLTDQFTNRKLVKS------SITKEEVSEKINRLMSGKSSDELRKNI 431 (478)
Q Consensus 359 L~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~-P~~~DQ~~na~rv~~------~~t~~~l~~~v~~ll~~~~~~~~r~~a 431 (478)
++.+|+ +|+..|..|+.||+++|+|+|+. |....|..|+..+++ .-+.+++.++|.++++ |++.+
T Consensus 271 ~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~---~~~~~--- 342 (391)
T PRK13608 271 MASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIADTPEEAIKIVASLTN---GNEQL--- 342 (391)
T ss_pred HHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhc---CHHHH---
Confidence 999999 99998888999999999999998 776677789988886 3488999999999998 65433
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011724 432 KEVRKKLENALSADGSSQKNFNQFINDVQ 460 (478)
Q Consensus 432 ~~l~~~~~~a~~~gg~~~~~~~~~i~~~~ 460 (478)
++|++..++.. ...+....++.+++.+.
T Consensus 343 ~~m~~~~~~~~-~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 343 TNMISTMEQDK-IKYATQTICRDLLDLIG 370 (391)
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHhh
Confidence 44555555432 23444555555554443
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.42 E-value=9.3e-11 Score=118.43 Aligned_cols=325 Identities=11% Similarity=0.107 Sum_probs=181.3
Q ss_pred CCccCHHHHHHHHHHHHh--CCCeEE---EEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCCCC
Q 011724 18 PLQGHVIPFVNLALKLAS--SGFTIT---FVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRSL 92 (478)
Q Consensus 18 ~~~GH~~p~l~La~~L~~--rGh~Vt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 92 (478)
-|.|-=.-.++||++|++ .|++|. ++++....+.-. -. .. + .+..+|.+ ++ +..
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~---ip-----------~~--g-~~~~~~sg---g~-~~~ 63 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLG---IP-----------II--G-PTKELPSG---GF-SYQ 63 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCC---Cc-----------ee--C-CCCCCCCC---Cc-cCC
Confidence 355555667889999998 699999 999877554221 10 00 2 33444422 11 123
Q ss_pred CHHHHHHHHHH-HhhHHHHH--HHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhhhhhhhc
Q 011724 93 NHDQFMECLLH-VFSAHVDE--LVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLLRSH 169 (478)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~~--ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 169 (478)
.....+..... .....++. +++++. .+||+||.-..+. +..+|+..|+|++.+.+.-...+ ..+.
T Consensus 64 ~~~~~~~~~~~gl~~~~~~~~~~~~~~~---~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~--------~~~~ 131 (396)
T TIGR03492 64 SLRGLLRDLRAGLVGLTLGQWRALRKWA---KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYY--------WESG 131 (396)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHh---hcCCEEEEECcHH-HHHHHHHcCCCceEEEeecccee--------ecCC
Confidence 34445544444 33333332 334432 2699999986445 88999999999999765322210 0000
Q ss_pred CCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHhcC-Cc
Q 011724 170 GHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQKQ-PT 248 (478)
Q Consensus 170 ~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~-p~ 248 (478)
+. .+..+...-.||....++ + .+++. -+.++.+++.+-. ..++++... ++
T Consensus 132 ---~~-~~~~~~~~~~~G~~~~p~-e--------------~n~l~-----~~~a~~v~~~~~~-----t~~~l~~~g~k~ 182 (396)
T TIGR03492 132 ---PR-RSPSDEYHRLEGSLYLPW-E--------------RWLMR-----SRRCLAVFVRDRL-----TARDLRRQGVRA 182 (396)
T ss_pred ---CC-CccchhhhccCCCccCHH-H--------------HHHhh-----chhhCEEeCCCHH-----HHHHHHHCCCeE
Confidence 00 000111111233221111 0 01111 1345555555533 233444332 48
Q ss_pred cccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhC----CCeEEEEECCCC
Q 011724 249 YAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLS----EVSFVWVLRPDI 324 (478)
Q Consensus 249 ~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~ 324 (478)
.++|-.+.+.-.. . ... -+ .+++++|.+--||....-.+.+..+++++.+. +.++++.+.++.
T Consensus 183 ~~vGnPv~d~l~~------~--~~~---~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~ 249 (396)
T TIGR03492 183 SYLGNPMMDGLEP------P--ERK---PL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL 249 (396)
T ss_pred EEeCcCHHhcCcc------c--ccc---cc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC
Confidence 8999887654311 0 110 11 22345788888888643334445566665553 567777774331
Q ss_pred CCCCccCCCChhhhhhhc---c--------------CCCeEEeecc-ChHhhhhccCcceeeeccCchhhHHHHhcCcce
Q 011724 325 VSSDETDFLPVGFEEKIK---I--------------SGRGLIVPWC-SQIDVISHSAIGGFLTHCGWNSIQESIWCSVPL 386 (478)
Q Consensus 325 ~~~~~~~~l~~~~~~~~~---~--------------~~nv~v~~~i-pq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~ 386 (478)
. .+.+...++ . .+++.+..+. +..++++.+++ +|+-.|..| .|+...|+|+
T Consensus 250 ~--------~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~ 318 (396)
T TIGR03492 250 S--------LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPV 318 (396)
T ss_pred C--------HHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCE
Confidence 0 011111100 0 1235555555 45779999999 999999766 9999999999
Q ss_pred eccCcccchhHHHHHhhc------------ccCHHHHHHHHHHHhCCCChHHHHHHHH
Q 011724 387 LCFPLLTDQFTNRKLVKS------------SITKEEVSEKINRLMSGKSSDELRKNIK 432 (478)
Q Consensus 387 l~~P~~~DQ~~na~rv~~------------~~t~~~l~~~v~~ll~~~~~~~~r~~a~ 432 (478)
|++|.-..|. |+...++ ..+.+.|.+++.+++. |++.+++..
T Consensus 319 Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~---d~~~~~~~~ 372 (396)
T TIGR03492 319 IQLPGKGPQF-TYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLA---DPELLERCR 372 (396)
T ss_pred EEEeCCCCHH-HHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHc---CHHHHHHHH
Confidence 9999877776 8875553 5566999999999998 776554444
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.39 E-value=4.8e-14 Score=125.27 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=89.7
Q ss_pred eEEEEecccccCC-HHHHHHHHHHHhh--CCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccC-hHhhhhc
Q 011724 286 VLYVSFGSYAHAS-KNDIVEIALGLLL--SEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCS-QIDVISH 361 (478)
Q Consensus 286 ~Vyvs~Gs~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ip-q~~vL~~ 361 (478)
+|+|+.||..... .+.+..++..+.. ...++++.+|.. ..+.....+.+ ...++.+.+|++ ...+++.
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~-----~~~~~~~~~~~---~~~~v~~~~~~~~m~~~m~~ 72 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKN-----NYEELKIKVEN---FNPNVKVFGFVDNMAELMAA 72 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTC-----ECHHHCCCHCC---TTCCCEEECSSSSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCC-----cHHHHHHHHhc---cCCcEEEEechhhHHHHHHH
Confidence 4899999886431 1123333333333 257888888755 11111111111 236899999999 8899999
Q ss_pred cCcceeeeccCchhhHHHHhcCcceeccCccc----chhHHHHHhhc----------ccCHHHHHHHHHHHhCCCChHHH
Q 011724 362 SAIGGFLTHCGWNSIQESIWCSVPLLCFPLLT----DQFTNRKLVKS----------SITKEEVSEKINRLMSGKSSDEL 427 (478)
Q Consensus 362 ~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~----DQ~~na~rv~~----------~~t~~~l~~~v~~ll~~~~~~~~ 427 (478)
+|+ +|||||.||++|++++|+|+|++|... +|..||..+++ ..+.+.|.++|.+++. ++..
T Consensus 73 aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~---~~~~ 147 (167)
T PF04101_consen 73 ADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLS---DPEK 147 (167)
T ss_dssp HSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCC---CHH-
T ss_pred cCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHc---CcHH
Confidence 999 999999999999999999999999988 99999999988 5668899999999998 5554
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.38 E-value=2.4e-10 Score=115.43 Aligned_cols=153 Identities=11% Similarity=0.080 Sum_probs=96.9
Q ss_pred hhHhHhhcCCCCCceEEEEecccccCCHH-HHHHHHHHHh-----hCCCeEEEEECCCCCCCCccCCCChhhhhhhccCC
Q 011724 272 SECTQWLNTKPRGSVLYVSFGSYAHASKN-DIVEIALGLL-----LSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISG 345 (478)
Q Consensus 272 ~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~-~~~~~~~al~-----~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 345 (478)
+++.+-+.-.+++++|.+..|+....... .++.+...+. ..+.++++++|.+. .+-+.+.+. ....
T Consensus 194 ~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~-------~~~~~L~~~-~~~~ 265 (382)
T PLN02605 194 DELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK-------KLQSKLESR-DWKI 265 (382)
T ss_pred HHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH-------HHHHHHHhh-cccC
Confidence 33444444334556777666655432222 2333332221 13355666666440 010111111 1234
Q ss_pred CeEEeeccCh-HhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchh-HHHHHhhc------ccCHHHHHHHHHH
Q 011724 346 RGLIVPWCSQ-IDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQF-TNRKLVKS------SITKEEVSEKINR 417 (478)
Q Consensus 346 nv~v~~~ipq-~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~-~na~rv~~------~~t~~~l~~~v~~ 417 (478)
++.+.+|+++ .++++.+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .-++++|.++|.+
T Consensus 266 ~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ 343 (382)
T PLN02605 266 PVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVAE 343 (382)
T ss_pred CeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHHH
Confidence 6888899985 679999999 999999999999999999999998766675 68887776 4578999999999
Q ss_pred HhCCCCh-HHHHHHHHHHHHHHHH
Q 011724 418 LMSGKSS-DELRKNIKEVRKKLEN 440 (478)
Q Consensus 418 ll~~~~~-~~~r~~a~~l~~~~~~ 440 (478)
++. + ++.+ ++|++..++
T Consensus 344 ll~---~~~~~~---~~m~~~~~~ 361 (382)
T PLN02605 344 WFG---DKSDEL---EAMSENALK 361 (382)
T ss_pred HHc---CCHHHH---HHHHHHHHH
Confidence 998 5 5433 344444444
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.33 E-value=3e-12 Score=109.97 Aligned_cols=123 Identities=12% Similarity=0.207 Sum_probs=81.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCCC
Q 011724 12 AIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRS 91 (478)
Q Consensus 12 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 91 (478)
|+|.+.|+.||++|+++||++|++|||+|++++++.+.+.++ .. |+.|..++.. ......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~---~~---------------Gl~~~~~~~~--~~~~~~ 60 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVE---AA---------------GLEFVPIPGD--SRLPRS 60 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHH---HT---------------T-EEEESSSC--GGGGHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccc---cc---------------CceEEEecCC--cCcCcc
Confidence 789999999999999999999999999999999999999998 66 8999998755 000000
Q ss_pred CCHHHHHHHHHHH--hhHHHHHHHHHhhc-------cCCCccEEEEcCCchhhHHHHHHcCCccEEEecchh
Q 011724 92 LNHDQFMECLLHV--FSAHVDELVGNLIQ-------LNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPA 154 (478)
Q Consensus 92 ~~~~~~~~~~~~~--~~~~~~~ll~~l~~-------~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~ 154 (478)
......+...... ....+.+.++.... ....+|+++.+.....+..+|+++|||++.....+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 61 LEPLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred cchhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 0111111111111 01111122222211 013588888898778999999999999999876554
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.26 E-value=2.4e-08 Score=99.18 Aligned_cols=149 Identities=12% Similarity=0.130 Sum_probs=89.9
Q ss_pred ceEEEEecccccC-CHHHHHHHHHHHhhC-CCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHh---hh
Q 011724 285 SVLYVSFGSYAHA-SKNDIVEIALGLLLS-EVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQID---VI 359 (478)
Q Consensus 285 ~~Vyvs~Gs~~~~-~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~---vL 359 (478)
+.+++..|+.... ..+.+..++..+.+. +..+++.-.+. ....+. . ...|+.+.+|+++.+ ++
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~---------~~~~~~-~--~~~~v~~~g~~~~~~~~~~~ 264 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP---------ARARLE-A--RYPNVHFLGFLDGEELAAAY 264 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc---------hHHHHh-c--cCCcEEEEeccCHHHHHHHH
Confidence 3566777776532 233344444444432 34444443222 111121 2 567899999998654 78
Q ss_pred hccCcceeeeccC----chhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccCHHHHHHHHHHHhCCCChHHH
Q 011724 360 SHSAIGGFLTHCG----WNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SITKEEVSEKINRLMSGKSSDEL 427 (478)
Q Consensus 360 ~~~~v~~~ItHGG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t~~~l~~~v~~ll~~~~~~~~ 427 (478)
+.+++ +|..+. .+++.||+++|+|+|+.+..+ +...+++ .-+.+++.+++.+++. +++.
T Consensus 265 ~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~---~~~~ 335 (364)
T cd03814 265 ASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLVEPGDAEAFAAALAALLA---DPEL 335 (364)
T ss_pred HhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEcCCCCHHHHHHHHHHHHc---CHHH
Confidence 89998 886654 478999999999999988654 2333332 5567889999999998 7665
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011724 428 RKNIKEVRKKLENALSADGSSQKNFNQFIND 458 (478)
Q Consensus 428 r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~ 458 (478)
+++..+-+..+.+ .-+.+...+++++.
T Consensus 336 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 362 (364)
T cd03814 336 RRRMAARARAEAE----RRSWEAFLDNLLEA 362 (364)
T ss_pred HHHHHHHHHHHHh----hcCHHHHHHHHHHh
Confidence 5544433333322 24444455555543
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.16 E-value=9.4e-09 Score=94.53 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=105.0
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccC-hHhhhhccCc
Q 011724 286 VLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCS-QIDVISHSAI 364 (478)
Q Consensus 286 ~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ip-q~~vL~~~~v 364 (478)
-|+||+|.. .+.+..-+++..|.+..+++-++++.. +....+...+....+|+.+..... +..++..+++
T Consensus 160 ~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~-------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~ 230 (318)
T COG3980 160 DILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSS-------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL 230 (318)
T ss_pred eEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCC-------CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch
Confidence 499999865 356677889999988887777777633 111223333322456777776665 6779999999
Q ss_pred ceeeeccCchhhHHHHhcCcceeccCcccchhHHHHHhhc---------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 011724 365 GGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS---------SITKEEVSEKINRLMSGKSSDELRKNIKEVR 435 (478)
Q Consensus 365 ~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~---------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~ 435 (478)
.|+-||. |+.|++.-|+|.+++|+.-.|--.|...+. .++.+.....+.++.. +..-|++.-..+
T Consensus 231 --aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~l~~~~~~~~~~~i~~---d~~~rk~l~~~~ 304 (318)
T COG3980 231 --AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYHLKDLAKDYEILQIQK---DYARRKNLSFGS 304 (318)
T ss_pred --heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCCCchHHHHHHHHHhhh---CHHHhhhhhhcc
Confidence 9998876 899999999999999999999999998888 4677788888888888 777777766665
Q ss_pred HHHH
Q 011724 436 KKLE 439 (478)
Q Consensus 436 ~~~~ 439 (478)
+..-
T Consensus 305 ~~i~ 308 (318)
T COG3980 305 KLIG 308 (318)
T ss_pred ceee
Confidence 5543
No 47
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.13 E-value=2.5e-07 Score=94.04 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=55.3
Q ss_pred CCCeEEeeccChHh---hhhccCcceeee-ccCc-hhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccCHHH
Q 011724 344 SGRGLIVPWCSQID---VISHSAIGGFLT-HCGW-NSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SITKEE 410 (478)
Q Consensus 344 ~~nv~v~~~ipq~~---vL~~~~v~~~It-HGG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t~~~ 410 (478)
.++|.+.+++|+.+ ++..+++-++.+ +.|. .++.||+++|+|+|+.... .....+.+ .-+.++
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~----g~~e~i~~~~~G~lv~~~d~~~ 355 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTA----PVREVITDGENGLLVDFFDPDA 355 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCC----CchhhcccCCceEEcCCCCHHH
Confidence 36788999999754 677888822223 2333 4899999999999986542 33333332 457999
Q ss_pred HHHHHHHHhCCCChHHHHH
Q 011724 411 VSEKINRLMSGKSSDELRK 429 (478)
Q Consensus 411 l~~~v~~ll~~~~~~~~r~ 429 (478)
++++|.++++ +++.++
T Consensus 356 la~~i~~ll~---~~~~~~ 371 (396)
T cd03818 356 LAAAVIELLD---DPARRA 371 (396)
T ss_pred HHHHHHHHHh---CHHHHH
Confidence 9999999998 665433
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.11 E-value=1.6e-07 Score=92.97 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=76.2
Q ss_pred CceEEEEecccccCC-HHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHh---hh
Q 011724 284 GSVLYVSFGSYAHAS-KNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQID---VI 359 (478)
Q Consensus 284 ~~~Vyvs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~---vL 359 (478)
.+.+++..|+..... .+.+...+..+.+.+.++++.-.+. .............++.+.+|+++.+ ++
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~---------~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 260 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGL---------ELEEESYELEGDPRVEFLGAYPQEEIDDFY 260 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCch---------hhhHHHHhhcCCCeEEEeCCCCHHHHHHHH
Confidence 346777788775322 3333333333333345554443222 0001000001357899999997544 68
Q ss_pred hccCcceeee----ccCc-hhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccCHHHHHHHHHHHhCCCChHH
Q 011724 360 SHSAIGGFLT----HCGW-NSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SITKEEVSEKINRLMSGKSSDE 426 (478)
Q Consensus 360 ~~~~v~~~It----HGG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t~~~l~~~v~~ll~~~~~~~ 426 (478)
..+++ +|. ..|. .++.||+++|+|+|+.+... +...+.+ .-+.+++.+++.++++ +++
T Consensus 261 ~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~---~~~ 331 (359)
T cd03823 261 AEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIGG----MAELVRDGVNGLLFPPGDAEDLAAALERLID---DPD 331 (359)
T ss_pred HhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCCC----HHHHhcCCCcEEEECCCCHHHHHHHHHHHHh---ChH
Confidence 88888 663 2344 47999999999999876542 3333333 4457999999999998 655
Q ss_pred HHHH
Q 011724 427 LRKN 430 (478)
Q Consensus 427 ~r~~ 430 (478)
.++.
T Consensus 332 ~~~~ 335 (359)
T cd03823 332 LLER 335 (359)
T ss_pred HHHH
Confidence 4443
No 49
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.09 E-value=2.5e-07 Score=96.12 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=76.4
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhC-CCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChH---hhhhc
Q 011724 286 VLYVSFGSYAHASKNDIVEIALGLLLS-EVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQI---DVISH 361 (478)
Q Consensus 286 ~Vyvs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~---~vL~~ 361 (478)
.+++..|.... ......+++++++. +.+++++ |.+ ...+.+.+.. ...+|.+.+++++. .+++.
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~iv-G~G--------~~~~~l~~~~-~~~~V~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFV-GDG--------PYREELEKMF-AGTPTVFTGMLQGDELSQAYAS 331 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEE-eCC--------hHHHHHHHHh-ccCCeEEeccCCHHHHHHHHHH
Confidence 45566687653 22355567777665 4555544 333 1112222211 23478888999754 47888
Q ss_pred cCcceeeeccC----chhhHHHHhcCcceeccCccc--chh-----HHHHHhhcccCHHHHHHHHHHHhCCCChHHHHHH
Q 011724 362 SAIGGFLTHCG----WNSIQESIWCSVPLLCFPLLT--DQF-----TNRKLVKSSITKEEVSEKINRLMSGKSSDELRKN 430 (478)
Q Consensus 362 ~~v~~~ItHGG----~~s~~Eal~~GvP~l~~P~~~--DQ~-----~na~rv~~~~t~~~l~~~v~~ll~~~~~~~~r~~ 430 (478)
+|+ ||.-.. ..++.||+++|+|+|+....+ |.- ..+..+...-+.++++++|.++++ +++.+++
T Consensus 332 aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~---~~~~~~~ 406 (465)
T PLN02871 332 GDV--FVMPSESETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA---DPELRER 406 (465)
T ss_pred CCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh---CHHHHHH
Confidence 898 774332 357899999999999876432 110 111111114578999999999998 6654443
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.08 E-value=2.3e-07 Score=93.78 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=56.8
Q ss_pred cCCCeEEeeccChHh---hhhccCcceeeec----cCchhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccC
Q 011724 343 ISGRGLIVPWCSQID---VISHSAIGGFLTH----CGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SIT 407 (478)
Q Consensus 343 ~~~nv~v~~~ipq~~---vL~~~~v~~~ItH----GG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t 407 (478)
..+|+.+.+|+|+.+ ++..+++ ++.. |-..++.||+++|+|+|+....+ ....+++ .-+
T Consensus 281 ~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~~~~~~ 354 (398)
T cd03800 281 VIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLLVDPRD 354 (398)
T ss_pred CCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEEeCCCC
Confidence 457899999999755 5888888 7743 22368999999999999876543 3333333 347
Q ss_pred HHHHHHHHHHHhCCCChHHHH
Q 011724 408 KEEVSEKINRLMSGKSSDELR 428 (478)
Q Consensus 408 ~~~l~~~v~~ll~~~~~~~~r 428 (478)
.++++++|.++++ +++.+
T Consensus 355 ~~~l~~~i~~l~~---~~~~~ 372 (398)
T cd03800 355 PEALAAALRRLLT---DPALR 372 (398)
T ss_pred HHHHHHHHHHHHh---CHHHH
Confidence 8999999999998 65443
No 51
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.07 E-value=3e-07 Score=92.15 Aligned_cols=106 Identities=18% Similarity=0.163 Sum_probs=66.6
Q ss_pred cCCCeEEeeccCh-HhhhhccCcceeee----ccCchhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccCHH
Q 011724 343 ISGRGLIVPWCSQ-IDVISHSAIGGFLT----HCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SITKE 409 (478)
Q Consensus 343 ~~~nv~v~~~ipq-~~vL~~~~v~~~It----HGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t~~ 409 (478)
..+++.+.++.++ ..++..+++ +|. -|...++.||+++|+|+|+.... ..+..+++ .-+.+
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~ 324 (371)
T cd04962 251 LQDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHGETGFLVDVGDVE 324 (371)
T ss_pred CCceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCCCceEEcCCCCHH
Confidence 4567888888864 668889988 662 23346999999999999986543 33333333 34789
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011724 410 EVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQ 460 (478)
Q Consensus 410 ~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~ 460 (478)
++.+++.++++ ++..+++.++ ..++.+...-+....++++.+.+.
T Consensus 325 ~l~~~i~~l~~---~~~~~~~~~~---~~~~~~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 325 AMAEYALSLLE---DDELWQEFSR---AARNRAAERFDSERIVPQYEALYR 369 (371)
T ss_pred HHHHHHHHHHh---CHHHHHHHHH---HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999998 6554333222 222211112444555555555443
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.07 E-value=1.2e-07 Score=94.72 Aligned_cols=341 Identities=13% Similarity=0.017 Sum_probs=166.8
Q ss_pred EEEEEcCC----CccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCC
Q 011724 11 HAIAICYP----LQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPL 86 (478)
Q Consensus 11 ~il~~~~~----~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 86 (478)
||++++.. ..|+-.....+++.|+++||+|++++......... ... ........++.+..++.....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~~~ 71 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGK---IYK------GYKREEVDGVRVHRVPLPPYK 71 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCccccc---ccc------cceEEecCCeEEEEEecCCCC
Confidence 56676632 24899999999999999999999999765443332 100 000000115555555432211
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCc----hhhHHHHHHcCCccEEEecchhHHHHHHHh
Q 011724 87 NFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFF----VWSSMIAKKYNLVNISFWTEPALVLTLYYH 162 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~----~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 162 (478)
.. ......... ..........+.. +. .+||+|++.... ..+..++...++|++............
T Consensus 72 ~~---~~~~~~~~~-~~~~~~~~~~~~~--~~--~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~--- 140 (394)
T cd03794 72 KN---GLLKRLLNY-LSFALSALLALLK--RR--RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAV--- 140 (394)
T ss_pred cc---chHHHHHhh-hHHHHHHHHHHHh--cc--cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHH---
Confidence 10 111111111 1111111222221 11 579999999622 234455666799998875432110000
Q ss_pred hhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHH
Q 011724 163 MDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISAL 242 (478)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~ 242 (478)
...... .... .......+.. ..+..++.+++.+....+ ..
T Consensus 141 ---------------------~~~~~~---~~~~---------~~~~~~~~~~--~~~~~~d~vi~~s~~~~~-----~~ 180 (394)
T cd03794 141 ---------------------ALGLLK---NGSL---------LYRLLRKLER--LIYRRADAIVVISPGMRE-----YL 180 (394)
T ss_pred ---------------------HccCcc---ccch---------HHHHHHHHHH--HHHhcCCEEEEECHHHHH-----HH
Confidence 000000 0000 0011111111 124567888887766443 22
Q ss_pred H--hcC-C-ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccC-CHHHHHHHHHHHhhC-CCeE
Q 011724 243 H--QKQ-P-TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHA-SKNDIVEIALGLLLS-EVSF 316 (478)
Q Consensus 243 ~--~~~-p-~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~-~~~~~~~~~~al~~~-~~~~ 316 (478)
. ... . +..+...+...... +........... ..+.+.+++..|+.... ..+.+...+..+.+. +.++
T Consensus 181 ~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l 253 (394)
T cd03794 181 VRRGVPPEKISVIPNGVDLELFK-----PPPADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRF 253 (394)
T ss_pred HhcCCCcCceEEcCCCCCHHHcC-----Cccchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEE
Confidence 1 111 1 44444433221100 000011011111 12334677778887632 233344444444443 4455
Q ss_pred EEEECCCCCCCCccCCCChhhhh--hhccCCCeEEeeccChH---hhhhccCcceeeeccC---------chhhHHHHhc
Q 011724 317 VWVLRPDIVSSDETDFLPVGFEE--KIKISGRGLIVPWCSQI---DVISHSAIGGFLTHCG---------WNSIQESIWC 382 (478)
Q Consensus 317 i~~~~~~~~~~~~~~~l~~~~~~--~~~~~~nv~v~~~ipq~---~vL~~~~v~~~ItHGG---------~~s~~Eal~~ 382 (478)
++. +.+ ...+.+.+ .....+|+.+.+++++. .++..+++ +|.... -+++.||+++
T Consensus 254 ~i~-G~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~ 322 (394)
T cd03794 254 LIV-GDG--------PEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAA 322 (394)
T ss_pred EEe-CCc--------ccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHC
Confidence 443 322 11112221 11134689999999854 46888888 664322 2347999999
Q ss_pred CcceeccCcccchhHHHH----HhhcccCHHHHHHHHHHHhCCCChHHHHHHHH
Q 011724 383 SVPLLCFPLLTDQFTNRK----LVKSSITKEEVSEKINRLMSGKSSDELRKNIK 432 (478)
Q Consensus 383 GvP~l~~P~~~DQ~~na~----rv~~~~t~~~l~~~v~~ll~~~~~~~~r~~a~ 432 (478)
|+|+|+.+....+..... .+...-+.++++++|.+++. +++.+++..
T Consensus 323 G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~---~~~~~~~~~ 373 (394)
T cd03794 323 GKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLD---DPEERAEMG 373 (394)
T ss_pred CCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHh---ChHHHHHHH
Confidence 999999988665443322 11113478999999999997 655544433
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.05 E-value=3.7e-07 Score=90.67 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=72.9
Q ss_pred ceEEEEecccccC-CHHHHHHHHHHHhh--CCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHh---h
Q 011724 285 SVLYVSFGSYAHA-SKNDIVEIALGLLL--SEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQID---V 358 (478)
Q Consensus 285 ~~Vyvs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~---v 358 (478)
+.+++..|+.... ..+.+..++..+.+ .+.++++.-.+. ..+.+ ....+++...+++.+.+++|+.+ +
T Consensus 202 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~-----~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~ 275 (374)
T cd03817 202 EPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP-----EREEL-EELARELGLADRVIFTGFVPREELPDY 275 (374)
T ss_pred CeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc-----hHHHH-HHHHHHcCCCCcEEEeccCChHHHHHH
Confidence 4566777876532 23344444444444 334554443322 00000 11111122567899999998654 6
Q ss_pred hhccCcceeeec----cCchhhHHHHhcCcceeccCcccchhHHHHHhhc-------ccCHHHHHHHHHHHhC
Q 011724 359 ISHSAIGGFLTH----CGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS-------SITKEEVSEKINRLMS 420 (478)
Q Consensus 359 L~~~~v~~~ItH----GG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~-------~~t~~~l~~~v~~ll~ 420 (478)
+..+++ +|.- ++.+++.||+++|+|+|+....+ .+..+.+ ..+.+++.+++.++++
T Consensus 276 ~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~----~~~~i~~~~~g~~~~~~~~~~~~~i~~l~~ 342 (374)
T cd03817 276 YKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDAPG----LPDLVADGENGFLFPPGDEALAEALLRLLQ 342 (374)
T ss_pred HHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCCCC----hhhheecCceeEEeCCCCHHHHHHHHHHHh
Confidence 888998 6633 33478999999999999876532 3333333 2222389999999998
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.01 E-value=1.1e-06 Score=86.49 Aligned_cols=316 Identities=12% Similarity=0.120 Sum_probs=159.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhh-hhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCC
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQ-ITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFD 89 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 89 (478)
||++++....|+...+..+++.|.+.||+|++++....... .. .. ++.+..++.....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~---~~---------------~~~~~~~~~~~~~--- 59 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE---AL---------------GVKVIPIPLDRRG--- 59 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc---cC---------------CceEEeccccccc---
Confidence 57888877778999999999999999999999998765542 22 22 6676666533210
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCch--hhHHHHHHcCCccEEEecchhHHHHHHHhhhhhh
Q 011724 90 RSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFV--WSSMIAKKYNLVNISFWTEPALVLTLYYHMDLLR 167 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 167 (478)
......+.... .+...++. .+||+|++..... .+..+++..+.|.+.........
T Consensus 60 --~~~~~~~~~~~-----~~~~~~~~-----~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------- 116 (359)
T cd03808 60 --INPFKDLKALL-----RLYRLLRK-----ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGF----------- 116 (359)
T ss_pred --cChHhHHHHHH-----HHHHHHHh-----cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcch-----------
Confidence 01111111111 12233333 5699999885432 33444554565555543221100
Q ss_pred hcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHhcCC
Q 011724 168 SHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQKQP 247 (478)
Q Consensus 168 ~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~p 247 (478)
....... .......+... .....+.+++.+....+.-.-....+...
T Consensus 117 -----------------~~~~~~~--------------~~~~~~~~~~~--~~~~~d~ii~~s~~~~~~~~~~~~~~~~~ 163 (359)
T cd03808 117 -----------------VFTSGGL--------------KRRLYLLLERL--ALRFTDKVIFQNEDDRDLALKLGIIKKKK 163 (359)
T ss_pred -----------------hhccchh--------------HHHHHHHHHHH--HHhhccEEEEcCHHHHHHHHHhcCCCcCc
Confidence 0000000 00111111111 23455788887766443110000000011
Q ss_pred -ccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccC-CHHHHHHHHHHHhh--CCCeEEEEECCC
Q 011724 248 -TYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHA-SKNDIVEIALGLLL--SEVSFVWVLRPD 323 (478)
Q Consensus 248 -~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~ 323 (478)
+..++..+...... .. ... ..+.+.+++..|+.... ..+.+.+.+..+.+ .+.+++++-.+.
T Consensus 164 ~~~~~~~~~~~~~~~-----~~--~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~ 229 (359)
T cd03808 164 TVLIPGSGVDLDRFS-----PS--PEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGD 229 (359)
T ss_pred eEEecCCCCChhhcC-----cc--ccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCC
Confidence 22222222111000 00 000 12334688888877632 23344444444443 234444443322
Q ss_pred CCCCCccCCCChhhhhhhccCCCeEEeeccC-hHhhhhccCcceeeeccC----chhhHHHHhcCcceeccCcccchhHH
Q 011724 324 IVSSDETDFLPVGFEEKIKISGRGLIVPWCS-QIDVISHSAIGGFLTHCG----WNSIQESIWCSVPLLCFPLLTDQFTN 398 (478)
Q Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ip-q~~vL~~~~v~~~ItHGG----~~s~~Eal~~GvP~l~~P~~~DQ~~n 398 (478)
.. +..............++.+.++.. ...++..+++ +|.-.. .+++.||+++|+|+|+.+... +
T Consensus 230 -~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~ 298 (359)
T cd03808 230 -EE----NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----C 298 (359)
T ss_pred -cc----hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----c
Confidence 00 000000011211346788888754 4668999998 775432 578999999999999976543 2
Q ss_pred HHHhhc--------ccCHHHHHHHHHHHhCCCChHHHHHHH
Q 011724 399 RKLVKS--------SITKEEVSEKINRLMSGKSSDELRKNI 431 (478)
Q Consensus 399 a~rv~~--------~~t~~~l~~~v~~ll~~~~~~~~r~~a 431 (478)
...+.+ .-+.+++.+++.+++. +++.+++.
T Consensus 299 ~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~---~~~~~~~~ 336 (359)
T cd03808 299 REAVIDGVNGFLVPPGDAEALADAIERLIE---DPELRARM 336 (359)
T ss_pred hhhhhcCcceEEECCCCHHHHHHHHHHHHh---CHHHHHHH
Confidence 222321 3468999999999998 66554433
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.00 E-value=4.6e-06 Score=85.19 Aligned_cols=112 Identities=11% Similarity=0.039 Sum_probs=68.1
Q ss_pred CCeEEeeccChH---hhhhccCcceeeeccCc------hhhHHHHhcCcceeccCcccch-hHH---HHHhhcccCHHHH
Q 011724 345 GRGLIVPWCSQI---DVISHSAIGGFLTHCGW------NSIQESIWCSVPLLCFPLLTDQ-FTN---RKLVKSSITKEEV 411 (478)
Q Consensus 345 ~nv~v~~~ipq~---~vL~~~~v~~~ItHGG~------~s~~Eal~~GvP~l~~P~~~DQ-~~n---a~rv~~~~t~~~l 411 (478)
+||.+.+|+|+. .+++.+|+.++.+..+. +.+.|++++|+|+|+....+.. .+. ...+...-+.+++
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~~~G~~~~~~d~~~l 363 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVEGIGVCVEPESVEAL 363 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHhCCcEEeCCCCHHHH
Confidence 478889999864 47888998555555332 2468999999999998654311 111 1111114578999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011724 412 SEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQFL 462 (478)
Q Consensus 412 ~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~~ 462 (478)
+++|.++++ +++.+++ |++..++..++.-+....++++++.+.+.
T Consensus 364 a~~i~~l~~---~~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 364 VAAIAALAR---QALLRPK---LGTVAREYAERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred HHHHHHHHh---CHHHHHH---HHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999999998 5543333 22222222222345556666666666543
No 56
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.98 E-value=1.9e-06 Score=88.07 Aligned_cols=120 Identities=11% Similarity=0.022 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCC
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLN 87 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 87 (478)
+++||.+++....|+-..+..+|+.|+++||+|++++........+..... ++.++.++.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~---------------~v~~~~~~~~~~-~ 65 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNP---------------NITIHPLPPPPQ-R 65 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCC---------------CEEEEECCCCcc-c
Confidence 567888888888888888899999999999999999875422111100022 788777653210 0
Q ss_pred CCCCCCHHHHHHHH---HHHhhHHHHHHHHHhhccCCCccEEEEcCCc-----hhhHHHHHHcCCccEEEec
Q 011724 88 FDRSLNHDQFMECL---LHVFSAHVDELVGNLIQLNPEMNCLVTDTFF-----VWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 88 ~~~~~~~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~-----~~~~~~A~~lgiP~v~~~~ 151 (478)
. ......+... ...+...+..+++. .+||+|++.... ..+..+++..++|+|..+.
T Consensus 66 ~---~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 66 L---NKLPFLLFAPLKVLWQFFSLLWLLYKL-----RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred c---ccchHHHHHHHHHHHHHHHHHHHHHhc-----CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 1 1111222111 11112222223332 469999985422 1244557778999887543
No 57
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.97 E-value=4e-08 Score=98.67 Aligned_cols=135 Identities=13% Similarity=0.177 Sum_probs=81.3
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhC-----CCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccCh---
Q 011724 284 GSVLYVSFGSYAHASKNDIVEIALGLLLS-----EVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQ--- 355 (478)
Q Consensus 284 ~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq--- 355 (478)
+++++++.+-.... ...+..+++++.+. +.++++...++. .....+.+.+...+++.+.+.+++
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 268 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP-------VVREPLHKHLGDSKRVHLIEPLEYLDF 268 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh-------HHHHHHHHHhCCCCCEEEECCCChHHH
Confidence 34565554322111 13356677776653 455665543320 011112222223467888876664
Q ss_pred HhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHHHHhhc----ccCHHHHHHHHHHHhCCCChHHHHHHH
Q 011724 356 IDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS----SITKEEVSEKINRLMSGKSSDELRKNI 431 (478)
Q Consensus 356 ~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~----~~t~~~l~~~v~~ll~~~~~~~~r~~a 431 (478)
..+++++++ +|+-.|.. +.||.++|+|+|.++...+++.... ... ..++++|.+++.++++ +++.+++.
T Consensus 269 ~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e~~~-~g~~~lv~~d~~~i~~ai~~ll~---~~~~~~~~ 341 (365)
T TIGR00236 269 LNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPETVE-AGTNKLVGTDKENITKAAKRLLT---DPDEYKKM 341 (365)
T ss_pred HHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChHHHh-cCceEEeCCCHHHHHHHHHHHHh---ChHHHHHh
Confidence 456788888 99977644 7999999999999976555553221 111 4578999999999998 77666654
Q ss_pred HH
Q 011724 432 KE 433 (478)
Q Consensus 432 ~~ 433 (478)
..
T Consensus 342 ~~ 343 (365)
T TIGR00236 342 SN 343 (365)
T ss_pred hh
Confidence 43
No 58
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.94 E-value=3.6e-06 Score=85.67 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=57.1
Q ss_pred cCCCeEEeeccCh---HhhhhccCcceeee---ccC-chhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccC
Q 011724 343 ISGRGLIVPWCSQ---IDVISHSAIGGFLT---HCG-WNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SIT 407 (478)
Q Consensus 343 ~~~nv~v~~~ipq---~~vL~~~~v~~~It---HGG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t 407 (478)
+.++|.+.+++|+ ..+|+.+++ +|. +.| ..++.||+++|+|+|+....+ ....+.+ .-+
T Consensus 281 l~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d 354 (405)
T TIGR03449 281 IADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLVDGHD 354 (405)
T ss_pred CCceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEECCCCC
Confidence 4578999999985 457889998 663 233 358999999999999876532 2222322 347
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHH
Q 011724 408 KEEVSEKINRLMSGKSSDELRKNI 431 (478)
Q Consensus 408 ~~~l~~~v~~ll~~~~~~~~r~~a 431 (478)
.+++++++.++++ +++.+++.
T Consensus 355 ~~~la~~i~~~l~---~~~~~~~~ 375 (405)
T TIGR03449 355 PADWADALARLLD---DPRTRIRM 375 (405)
T ss_pred HHHHHHHHHHHHh---CHHHHHHH
Confidence 8999999999998 65544433
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.93 E-value=1e-06 Score=86.33 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=62.3
Q ss_pred cCCCeEEeeccC-hHhhhhccCcceeeecc----CchhhHHHHhcCcceeccCcccchhHHHHH-----hhcccCHHHHH
Q 011724 343 ISGRGLIVPWCS-QIDVISHSAIGGFLTHC----GWNSIQESIWCSVPLLCFPLLTDQFTNRKL-----VKSSITKEEVS 412 (478)
Q Consensus 343 ~~~nv~v~~~ip-q~~vL~~~~v~~~ItHG----G~~s~~Eal~~GvP~l~~P~~~DQ~~na~r-----v~~~~t~~~l~ 412 (478)
...++.+.++.. ...++..+++ +|.-. ..+++.||+++|+|+|+.+....+...... +....+.++++
T Consensus 233 ~~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 310 (348)
T cd03820 233 LEDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALA 310 (348)
T ss_pred CCCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHH
Confidence 456788887743 4678889988 66553 257899999999999998765443322211 11145679999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHH
Q 011724 413 EKINRLMSGKSSDELRKNIKEVRKKL 438 (478)
Q Consensus 413 ~~v~~ll~~~~~~~~r~~a~~l~~~~ 438 (478)
+++.++++ |++.+++..+-++.+
T Consensus 311 ~~i~~ll~---~~~~~~~~~~~~~~~ 333 (348)
T cd03820 311 EALLRLME---DEELRKRMGANARES 333 (348)
T ss_pred HHHHHHHc---CHHHHHHHHHHHHHH
Confidence 99999998 777665555444333
No 60
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.93 E-value=2.8e-06 Score=83.67 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=58.1
Q ss_pred cCCCeEEeeccCh---HhhhhccCcceeee----ccCchhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccC
Q 011724 343 ISGRGLIVPWCSQ---IDVISHSAIGGFLT----HCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SIT 407 (478)
Q Consensus 343 ~~~nv~v~~~ipq---~~vL~~~~v~~~It----HGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t 407 (478)
.+.++.+.+++++ ..++..+++ +|. -|..+++.||+++|+|+|+.+. ......+.+ ..+
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~~~~~~~ 327 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGLLVPPGD 327 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceEEeCCCC
Confidence 5678999999974 457888888 663 3556799999999999998775 233444432 455
Q ss_pred HHHHHHHHHHHhCCCChHHHHH
Q 011724 408 KEEVSEKINRLMSGKSSDELRK 429 (478)
Q Consensus 408 ~~~l~~~v~~ll~~~~~~~~r~ 429 (478)
.+++.+++.++++ +++.++
T Consensus 328 ~~~l~~~i~~~~~---~~~~~~ 346 (374)
T cd03801 328 PEALAEAILRLLD---DPELRR 346 (374)
T ss_pred HHHHHHHHHHHHc---ChHHHH
Confidence 8999999999998 665443
No 61
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.90 E-value=2.4e-06 Score=86.89 Aligned_cols=124 Identities=16% Similarity=0.184 Sum_probs=72.1
Q ss_pred ceEEEEecccccC-CHHHHHHHHHHHhh--CCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccCh---Hhh
Q 011724 285 SVLYVSFGSYAHA-SKNDIVEIALGLLL--SEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQ---IDV 358 (478)
Q Consensus 285 ~~Vyvs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq---~~v 358 (478)
..+++..|..... ..+.+...+..+.+ .+..++++ |.+. ..+.+ ....+++.+.+++.+.+|+|+ ..+
T Consensus 193 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~----~~~~l-~~~~~~~~l~~~v~~~G~~~~~~~~~~ 266 (398)
T cd03796 193 KITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIG-GDGP----KRILL-EEMREKYNLQDRVELLGAVPHERVRDV 266 (398)
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEE-eCCc----hHHHH-HHHHHHhCCCCeEEEeCCCCHHHHHHH
Confidence 4577777877532 23333333333433 23344443 3220 00001 112222234567999999985 447
Q ss_pred hhccCcceeee---ccCc-hhhHHHHhcCcceeccCcccchhHHHHHhhc------ccCHHHHHHHHHHHhC
Q 011724 359 ISHSAIGGFLT---HCGW-NSIQESIWCSVPLLCFPLLTDQFTNRKLVKS------SITKEEVSEKINRLMS 420 (478)
Q Consensus 359 L~~~~v~~~It---HGG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------~~t~~~l~~~v~~ll~ 420 (478)
++.+++ +|. +-|. .++.||+++|+|+|+.+..+- ...+.+ ..+.+++.+++.+++.
T Consensus 267 l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~~~~~~~~~~~~~~l~~~l~~~l~ 332 (398)
T cd03796 267 LVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLPPDMILLAEPDVESIVRKLEEAIS 332 (398)
T ss_pred HHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhheeCCceeecCCCHHHHHHHHHHHHh
Confidence 788888 653 3344 499999999999999776421 111112 3478999999999997
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.88 E-value=3.3e-06 Score=84.18 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=66.8
Q ss_pred cCCCeEEeeccC-hH---hhhhccCcceeeecc----CchhhHHHHhcCcceeccCccc--chhHHH--HHhhcccCHHH
Q 011724 343 ISGRGLIVPWCS-QI---DVISHSAIGGFLTHC----GWNSIQESIWCSVPLLCFPLLT--DQFTNR--KLVKSSITKEE 410 (478)
Q Consensus 343 ~~~nv~v~~~ip-q~---~vL~~~~v~~~ItHG----G~~s~~Eal~~GvP~l~~P~~~--DQ~~na--~rv~~~~t~~~ 410 (478)
...++...+|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+....+ |...+. ..+....+.++
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~ 319 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPED 319 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHH
Confidence 456788889998 43 46888888 77743 3579999999999999865432 211110 11111447899
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011724 411 VSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDV 459 (478)
Q Consensus 411 l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~ 459 (478)
+++++.+++. +++.+++ +++..++...+.-+.+...+++++-+
T Consensus 320 ~~~~l~~l~~---~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~y 362 (365)
T cd03825 320 LAEGIEWLLA---DPDEREE---LGEAARELAENEFDSRVQAKRYLSLY 362 (365)
T ss_pred HHHHHHHHHh---CHHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999998 6653322 22222222222345455555555544
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.87 E-value=4.5e-06 Score=82.50 Aligned_cols=130 Identities=13% Similarity=0.138 Sum_probs=76.2
Q ss_pred CceEEEEecccccC-CHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChH---hhh
Q 011724 284 GSVLYVSFGSYAHA-SKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQI---DVI 359 (478)
Q Consensus 284 ~~~Vyvs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~---~vL 359 (478)
...+++..|+.... ..+.+...+..+.+.+.++.+.+.+.... .+.+ ....+.....+|+.+.+++++. .++
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~---~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 276 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPL---REAL-EALAAELGLEDRVTFLGAVPHEEVPAYY 276 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcc---hHHH-HHHHHhcCCcceEEEeCCCCHHHHHHHH
Confidence 34677778877642 23333334444443323333333322000 0000 1111112246789999999864 568
Q ss_pred hccCcceee----eccCchhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccCHHHHHHHHHHHhCCCChHH
Q 011724 360 SHSAIGGFL----THCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SITKEEVSEKINRLMSGKSSDE 426 (478)
Q Consensus 360 ~~~~v~~~I----tHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t~~~l~~~v~~ll~~~~~~~ 426 (478)
..+++ +| +-|..+++.||+++|+|+|+-+..+ ....+.+ .-+.+++.+++.++++ ++.
T Consensus 277 ~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~---~~~ 346 (377)
T cd03798 277 AAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDGENGLLVPPGDPEALAEAILRLLA---DPW 346 (377)
T ss_pred HhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCCcceeEECCCCHHHHHHHHHHHhc---CcH
Confidence 88888 55 2245678999999999999876543 2223333 4578999999999998 555
No 64
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.85 E-value=4.9e-06 Score=82.48 Aligned_cols=84 Identities=10% Similarity=0.055 Sum_probs=55.8
Q ss_pred cCCCeEEeeccChH---hhhhccCcceeeec---cC-chhhHHHHhcCcceeccCcccchhHHHHHhhc--ccCHHHHHH
Q 011724 343 ISGRGLIVPWCSQI---DVISHSAIGGFLTH---CG-WNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--SITKEEVSE 413 (478)
Q Consensus 343 ~~~nv~v~~~ipq~---~vL~~~~v~~~ItH---GG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~ 413 (478)
..+++.+.+|+++. .++..+++ +|.- .| .+++.||+++|+|+|+.+..+=.......... ..+.+++.+
T Consensus 260 ~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (375)
T cd03821 260 LEDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVPWQELIEYGCGWVVDDDVDALAA 337 (375)
T ss_pred ccceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhcCceEEeCCChHHHHH
Confidence 56789999999954 46788888 5532 22 46899999999999997653311111110000 445699999
Q ss_pred HHHHHhCCCChHHHHHHH
Q 011724 414 KINRLMSGKSSDELRKNI 431 (478)
Q Consensus 414 ~v~~ll~~~~~~~~r~~a 431 (478)
++.+++. +++.+++.
T Consensus 338 ~i~~l~~---~~~~~~~~ 352 (375)
T cd03821 338 ALRRALE---LPQRLKAM 352 (375)
T ss_pred HHHHHHh---CHHHHHHH
Confidence 9999998 65444333
No 65
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.83 E-value=7.9e-06 Score=82.66 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=54.2
Q ss_pred cCCCeEEeeccChH---hhhhccCcceeeec---cC-chhhHHHHhcCcceeccCccc--chhHH--HHHhhcccCHHHH
Q 011724 343 ISGRGLIVPWCSQI---DVISHSAIGGFLTH---CG-WNSIQESIWCSVPLLCFPLLT--DQFTN--RKLVKSSITKEEV 411 (478)
Q Consensus 343 ~~~nv~v~~~ipq~---~vL~~~~v~~~ItH---GG-~~s~~Eal~~GvP~l~~P~~~--DQ~~n--a~rv~~~~t~~~l 411 (478)
+.++|.+.+++|+. .++..+++ ++.. -| ..++.||+++|+|+|+.-..+ |.-.+ +..+. ..+.+++
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~-~~~~~~~ 354 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLC-EPTPEEF 354 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEe-CCCHHHH
Confidence 45789999999965 57888888 6642 22 257899999999999865432 21111 11111 3488999
Q ss_pred HHHHHHHhCCCChHHH
Q 011724 412 SEKINRLMSGKSSDEL 427 (478)
Q Consensus 412 ~~~v~~ll~~~~~~~~ 427 (478)
++++.++++ +++.
T Consensus 355 a~~i~~l~~---~~~~ 367 (392)
T cd03805 355 AEAMLKLAN---DPDL 367 (392)
T ss_pred HHHHHHHHh---ChHH
Confidence 999999998 5543
No 66
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.81 E-value=1e-05 Score=83.01 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=60.1
Q ss_pred CeEEeeccC-hHhhhhccCcceeeec-----cCchhhHHHHhcCcceeccCcccchhHHHHHhhc------ccCHHHHHH
Q 011724 346 RGLIVPWCS-QIDVISHSAIGGFLTH-----CGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS------SITKEEVSE 413 (478)
Q Consensus 346 nv~v~~~ip-q~~vL~~~~v~~~ItH-----GG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------~~t~~~l~~ 413 (478)
++.+.+... ...+++.+|+ ++.. +|..++.||+++|+|+|+-|...++.+....+.+ .-+.++|++
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~ 380 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAK 380 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHH
Confidence 455555444 3567888887 5442 3444699999999999999998888888777654 357899999
Q ss_pred HHHHHhCCCChHHHHHHHH
Q 011724 414 KINRLMSGKSSDELRKNIK 432 (478)
Q Consensus 414 ~v~~ll~~~~~~~~r~~a~ 432 (478)
++.++++ |++.+++..
T Consensus 381 ~l~~ll~---~~~~~~~m~ 396 (425)
T PRK05749 381 AVTYLLT---DPDARQAYG 396 (425)
T ss_pred HHHHHhc---CHHHHHHHH
Confidence 9999998 766554433
No 67
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.81 E-value=2.1e-05 Score=86.68 Aligned_cols=386 Identities=11% Similarity=0.076 Sum_probs=184.6
Q ss_pred CCCCCCEEEEEcCCC---------------ccCHHHHHHHHHHHHhCC--CeEEEEeCCchhhhhhhhcCCCCCcc-hh-
Q 011724 5 HKKPKPHAIAICYPL---------------QGHVIPFVNLALKLASSG--FTITFVNTHSIHHQITKAQSNGDEDD-IF- 65 (478)
Q Consensus 5 ~~~~~~~il~~~~~~---------------~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~~-~~- 65 (478)
.+.++|.|++++..+ .|+..-.+.||++|+++| |+|.++|-...-..+. ..|-++. ..
T Consensus 165 ~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~---~~y~~p~e~~~ 241 (1050)
T TIGR02468 165 QKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVD---WSYGEPTEMLT 241 (1050)
T ss_pred cccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccc---cccCCcccccc
Confidence 445568888887322 257777899999999998 8999999755432221 0000000 00
Q ss_pred -------ccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHHHHHHHhhHHHHH----HHHHhhc-cCCCccEEEEcCCc-
Q 011724 66 -------AGARKAGLDIRYATVSDGLPLNFDRSLNHDQFMECLLHVFSAHVDE----LVGNLIQ-LNPEMNCLVTDTFF- 132 (478)
Q Consensus 66 -------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----ll~~l~~-~~~~pD~vi~D~~~- 132 (478)
.......++++.+.+|.+-....-....+...+..|.+.+...+.. +.+.+.. ....||+|-+....
T Consensus 242 ~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~s 321 (1050)
T TIGR02468 242 PRSSENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADA 321 (1050)
T ss_pred ccccccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchH
Confidence 0000122378888888664422222233444455544444333322 2222211 11249999998644
Q ss_pred -hhhHHHHHHcCCccEEEecchhHHHHHHHhhhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHH
Q 011724 133 -VWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHR 211 (478)
Q Consensus 133 -~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (478)
..+..+++.+|||+|....+....- ...+. ..|.. ....+...+ .+..
T Consensus 322 G~aa~~L~~~lgVP~V~T~HSLgr~K-----~~~ll-----------------~~g~~--~~~~~~~~y-------~~~~ 370 (1050)
T TIGR02468 322 GDSAALLSGALNVPMVLTGHSLGRDK-----LEQLL-----------------KQGRM--SKEEINSTY-------KIMR 370 (1050)
T ss_pred HHHHHHHHHhhCCCEEEECccchhhh-----hhhhc-----------------ccccc--ccccccccc-------chHH
Confidence 6678899999999887755422100 00000 00000 000000000 0011
Q ss_pred HHHHHhhhhccccEEEecChhhhcHHHHHH--HHh-------------------cCC---ccccccC----CCCCCCCCC
Q 011724 212 IIQKAFEDVKRVDFILCNTVHELESETISA--LHQ-------------------KQP---TYAIGPI----FPAGFTKSL 263 (478)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~le~~~~~~--~~~-------------------~~p---~~~vGp~----~~~~~~~~~ 263 (478)
++..-...+..++.++..|..+.+.-+--| ..+ ..| +++-|-- .+.......
T Consensus 371 Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~ 450 (1050)
T TIGR02468 371 RIEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDG 450 (1050)
T ss_pred HHHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccc
Confidence 111111234567888888877776321111 000 012 2222211 000000000
Q ss_pred --------CCCCCC-ChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCC-----CeEEEEECCCCCCCCc
Q 011724 264 --------VPTSLW-SESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSE-----VSFVWVLRPDIVSSDE 329 (478)
Q Consensus 264 --------~~~~l~-~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~ 329 (478)
...+.+ ....+..|+.. ++++ ++++.|...... -+..+++|+.... .++.++++........
T Consensus 451 ~~~~~~~~~~~~~~~~~~~l~r~~~~-pdkp-vIL~VGRL~p~K--Gi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l 526 (1050)
T TIGR02468 451 ETEGNEEHPAKPDPPIWSEIMRFFTN-PRKP-MILALARPDPKK--NITTLVKAFGECRPLRELANLTLIMGNRDDIDEM 526 (1050)
T ss_pred hhcccccccccccchhhHHHHhhccc-CCCc-EEEEEcCCcccc--CHHHHHHHHHHhHhhccCCCEEEEEecCchhhhh
Confidence 000000 02345566654 3343 455566665322 2344555554421 2444455533110000
Q ss_pred c-------CCCChhhhhhhccCCCeEEeeccChHh---hhhccC--cceeeec---cCc-hhhHHHHhcCcceeccCccc
Q 011724 330 T-------DFLPVGFEEKIKISGRGLIVPWCSQID---VISHSA--IGGFLTH---CGW-NSIQESIWCSVPLLCFPLLT 393 (478)
Q Consensus 330 ~-------~~l~~~~~~~~~~~~nv~v~~~ipq~~---vL~~~~--v~~~ItH---GG~-~s~~Eal~~GvP~l~~P~~~ 393 (478)
. ..+ ..+.+++.+.++|.+.+++++.+ ++..++ .++||.- =|+ .++.||+++|+|+|+....+
T Consensus 527 ~~~~~~~l~~L-~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG 605 (1050)
T TIGR02468 527 SSGSSSVLTSV-LKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG 605 (1050)
T ss_pred hccchHHHHHH-HHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC
Confidence 0 000 11223334567888889988755 455552 1227763 344 58999999999999987543
Q ss_pred --chhHH--HHHhhcccCHHHHHHHHHHHhCCCChHHHHHHHH
Q 011724 394 --DQFTN--RKLVKSSITKEEVSEKINRLMSGKSSDELRKNIK 432 (478)
Q Consensus 394 --DQ~~n--a~rv~~~~t~~~l~~~v~~ll~~~~~~~~r~~a~ 432 (478)
|-..+ ...+...-+.++|+++|.++++ +++.+++..
T Consensus 606 ~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~---Dpelr~~m~ 645 (1050)
T TIGR02468 606 PVDIHRVLDNGLLVDPHDQQAIADALLKLVA---DKQLWAECR 645 (1050)
T ss_pred cHHHhccCCcEEEECCCCHHHHHHHHHHHhh---CHHHHHHHH
Confidence 21111 1111224578999999999998 665544433
No 68
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.77 E-value=1.3e-05 Score=79.69 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=81.5
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhCC-CeEEEEECCCCCCCCccCCCChhhhh---hhccCCCeEEeeccChH---h
Q 011724 285 SVLYVSFGSYAHASKNDIVEIALGLLLSE-VSFVWVLRPDIVSSDETDFLPVGFEE---KIKISGRGLIVPWCSQI---D 357 (478)
Q Consensus 285 ~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~l~~~~~~---~~~~~~nv~v~~~ipq~---~ 357 (478)
..+++..|..... .-...+++++++.. .++++...+. ....+.+ +.....||.+.+|+|+. .
T Consensus 191 ~~~i~~~G~~~~~--K~~~~li~a~~~l~~~~l~i~G~g~---------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 191 RPFFLFVGRLVYY--KGLDVLLEAAAALPDAPLVIVGEGP---------LEAELEALAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred CcEEEEecccccc--cCHHHHHHHHHhccCcEEEEEeCCh---------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHH
Confidence 3567778876532 23455667776665 5554443322 1112211 22246789999999974 4
Q ss_pred hhhccCcceeee---ccCc-hhhHHHHhcCcceeccCcccchhHHHH-----HhhcccCHHHHHHHHHHHhCCCChHHHH
Q 011724 358 VISHSAIGGFLT---HCGW-NSIQESIWCSVPLLCFPLLTDQFTNRK-----LVKSSITKEEVSEKINRLMSGKSSDELR 428 (478)
Q Consensus 358 vL~~~~v~~~It---HGG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~-----rv~~~~t~~~l~~~v~~ll~~~~~~~~r 428 (478)
+++.+++.++.+ +.|. .++.||+++|+|+|+............ .+...-+.++++++|.++++ |++.+
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~---~~~~~ 336 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLE---DPELR 336 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHH---CHHHH
Confidence 777888833333 2344 479999999999999876654443332 11114578999999999998 66544
Q ss_pred H
Q 011724 429 K 429 (478)
Q Consensus 429 ~ 429 (478)
+
T Consensus 337 ~ 337 (357)
T cd03795 337 E 337 (357)
T ss_pred H
Confidence 3
No 69
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.75 E-value=4.1e-05 Score=75.53 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=52.5
Q ss_pred cCCCeEEeeccC-hHhhhhccCcceeeeccC----chhhHHHHhcCcceeccCcccchhHHHHHhhc------ccCHHHH
Q 011724 343 ISGRGLIVPWCS-QIDVISHSAIGGFLTHCG----WNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS------SITKEEV 411 (478)
Q Consensus 343 ~~~nv~v~~~ip-q~~vL~~~~v~~~ItHGG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------~~t~~~l 411 (478)
..+++.+.+... ...+++.+++ +|.... .+++.||+++|+|+|+....+ +...+.+ .-+.+++
T Consensus 249 ~~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~----~~e~~~~~g~~~~~~~~~~l 322 (365)
T cd03807 249 LEDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDVGD----NAELVGDTGFLVPPGDPEAL 322 (365)
T ss_pred CCceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCCCC----hHHHhhcCCEEeCCCCHHHH
Confidence 456777776554 4678999998 776543 479999999999999865533 2222222 4578999
Q ss_pred HHHHHHHhC
Q 011724 412 SEKINRLMS 420 (478)
Q Consensus 412 ~~~v~~ll~ 420 (478)
.+++.++++
T Consensus 323 ~~~i~~l~~ 331 (365)
T cd03807 323 AEAIEALLA 331 (365)
T ss_pred HHHHHHHHh
Confidence 999999998
No 70
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.72 E-value=1.5e-05 Score=79.44 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=82.2
Q ss_pred EEEecccccCCHHHHHHHHHHHhhCC--CeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHh---hhhcc
Q 011724 288 YVSFGSYAHASKNDIVEIALGLLLSE--VSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQID---VISHS 362 (478)
Q Consensus 288 yvs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~---vL~~~ 362 (478)
++..|+.... .-+..+++++++.. .+++++-++. . .+.+-....+.....++|.+.+++++.+ .+..+
T Consensus 196 i~~~G~~~~~--Kg~~~li~a~~~l~~~~~l~ivG~~~-~----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~a 268 (363)
T cd04955 196 YLLVGRIVPE--NNIDDLIEAFSKSNSGKKLVIVGNAD-H----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYA 268 (363)
T ss_pred EEEEeccccc--CCHHHHHHHHHhhccCceEEEEcCCC-C----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhC
Confidence 4557777532 22445566666543 4554443321 0 0011111111222567899999998754 56667
Q ss_pred CcceeeeccCc-----hhhHHHHhcCcceeccCccc--chhHHHHHhhcccC-HHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011724 363 AIGGFLTHCGW-----NSIQESIWCSVPLLCFPLLT--DQFTNRKLVKSSIT-KEEVSEKINRLMSGKSSDELRKNIKEV 434 (478)
Q Consensus 363 ~v~~~ItHGG~-----~s~~Eal~~GvP~l~~P~~~--DQ~~na~rv~~~~t-~~~l~~~v~~ll~~~~~~~~r~~a~~l 434 (478)
++ ++-+.-. +++.||+++|+|+|+..... |.-.+. ...+. .+.+++++.++++ +++.++ ++
T Consensus 269 d~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~---g~~~~~~~~l~~~i~~l~~---~~~~~~---~~ 337 (363)
T cd04955 269 AL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVLGDK---AIYFKVGDDLASLLEELEA---DPEEVS---AM 337 (363)
T ss_pred CE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCccceeecCC---eeEecCchHHHHHHHHHHh---CHHHHH---HH
Confidence 77 6554332 57999999999999876532 221110 01122 2239999999998 654433 33
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHH
Q 011724 435 RKKLENALSADGSSQKNFNQFIND 458 (478)
Q Consensus 435 ~~~~~~a~~~gg~~~~~~~~~i~~ 458 (478)
++..++...+.-+-+..++++++.
T Consensus 338 ~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 338 AKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444443333334545555555543
No 71
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.69 E-value=1.8e-05 Score=77.49 Aligned_cols=296 Identities=16% Similarity=0.126 Sum_probs=160.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCch--hhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSI--HHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLN 87 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 87 (478)
|||.+-- ...-|+.-+..++++|.++||+|.+.+-... .+.++ .. ++.+..+..--
T Consensus 1 MkIwiDi-~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~---~y---------------g~~y~~iG~~g--- 58 (335)
T PF04007_consen 1 MKIWIDI-THPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLD---LY---------------GIDYIVIGKHG--- 58 (335)
T ss_pred CeEEEEC-CCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHH---Hc---------------CCCeEEEcCCC---
Confidence 5666654 3344999999999999999999998887543 23444 33 77777664211
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHHHHHHHhhhhhh
Q 011724 88 FDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALVLTLYYHMDLLR 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 167 (478)
.+....+..... ....+++.++. .+||++|+- .++.+..+|..+|+|+|.+.-+........+
T Consensus 59 ----~~~~~Kl~~~~~----R~~~l~~~~~~--~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~L------ 121 (335)
T PF04007_consen 59 ----DSLYGKLLESIE----RQYKLLKLIKK--FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRL------ 121 (335)
T ss_pred ----CCHHHHHHHHHH----HHHHHHHHHHh--hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcccee------
Confidence 111122211111 12223344433 679999975 4688888999999999999765433210000
Q ss_pred hcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEE-ecChhhhcHHHHHHHHhcC
Q 011724 168 SHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFIL-CNTVHELESETISALHQKQ 246 (478)
Q Consensus 168 ~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~le~~~~~~~~~~~ 246 (478)
..|+. +.+ ..|.. . ....... + -.+ +.+. ++...++
T Consensus 122 ---t~Pla----~~i-~~P~~-----------~-----~~~~~~~----~--G~~-~~i~~y~G~~E~------------ 158 (335)
T PF04007_consen 122 ---TLPLA----DVI-ITPEA-----------I-----PKEFLKR----F--GAK-NQIRTYNGYKEL------------ 158 (335)
T ss_pred ---ehhcC----Cee-ECCcc-----------c-----CHHHHHh----c--CCc-CCEEEECCeeeE------------
Confidence 00100 000 01100 0 0000000 0 001 1222 3333322
Q ss_pred CccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEeccccc----CCHHHHHHHHHHHhhCCCeEEEEECC
Q 011724 247 PTYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAH----ASKNDIVEIALGLLLSEVSFVWVLRP 322 (478)
Q Consensus 247 p~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~----~~~~~~~~~~~al~~~~~~~i~~~~~ 322 (478)
.++=|..+ ++++.+-+... +.+.|++-+.+... .....+..+++.|++.+..+|..-..
T Consensus 159 --ayl~~F~P--------------d~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~ 221 (335)
T PF04007_consen 159 --AYLHPFKP--------------DPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRY 221 (335)
T ss_pred --EeecCCCC--------------ChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCC
Confidence 22222111 34444445432 34677777765332 23455778999999988774444322
Q ss_pred CCCCCCccCCCChhhhhhhccCCCeEEe-eccChHhhhhccCcceeeeccCchhhHHHHhcCcceec-cC---cccchhH
Q 011724 323 DIVSSDETDFLPVGFEEKIKISGRGLIV-PWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLC-FP---LLTDQFT 397 (478)
Q Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~nv~v~-~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~-~P---~~~DQ~~ 397 (478)
. ..++-+ ++ - ++.+. .-++-.++|.++++ ||+-|| ....||..-|+|.|. .| ...||..
T Consensus 222 ~--------~~~~~~-~~---~-~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~~~g~~~~vd~~L 285 (335)
T PF04007_consen 222 E--------DQRELF-EK---Y-GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISCFPGKLLAVDKYL 285 (335)
T ss_pred c--------chhhHH-hc---c-CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEecCCcchhHHHHH
Confidence 2 111111 11 1 23333 55666789999999 999888 778899999999996 34 2345554
Q ss_pred HHHHhhc-ccCHHHHHHHHHHHhC
Q 011724 398 NRKLVKS-SITKEEVSEKINRLMS 420 (478)
Q Consensus 398 na~rv~~-~~t~~~l~~~v~~ll~ 420 (478)
.-.-+-. .-+.+++.+.+.+.+.
T Consensus 286 ~~~Gll~~~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 286 IEKGLLYHSTDPDEIVEYVRKNLG 309 (335)
T ss_pred HHCCCeEecCCHHHHHHHHHHhhh
Confidence 3322211 6677888876666554
No 72
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.69 E-value=5.3e-06 Score=83.15 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=72.5
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhC--CCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccCh-----Hhh
Q 011724 286 VLYVSFGSYAHASKNDIVEIALGLLLS--EVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQ-----IDV 358 (478)
Q Consensus 286 ~Vyvs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq-----~~v 358 (478)
.+++..|.........+..+++++.+. +.++++ +|.+. ..+.+ ....+.+.++++|.+.+|+++ .+.
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~g~----~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGDGS----DFEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeCCc----cHHHH-HHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 466777776432223355566666654 334443 33330 01111 122222235678999999853 234
Q ss_pred hhccCcceeeec----cCchhhHHHHhcCcceeccC-cccchhHHHHHhhc--------ccCHHHHHHHHHHHhC
Q 011724 359 ISHSAIGGFLTH----CGWNSIQESIWCSVPLLCFP-LLTDQFTNRKLVKS--------SITKEEVSEKINRLMS 420 (478)
Q Consensus 359 L~~~~v~~~ItH----GG~~s~~Eal~~GvP~l~~P-~~~DQ~~na~rv~~--------~~t~~~l~~~v~~ll~ 420 (478)
++.+++ +|.- |-..++.||+++|+|+|+.- ..+ ...-+++ .-+.++++++|.++++
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~ 323 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELYTPGNIDEFVGKLNKVIS 323 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEECCCCHHHHHHHHHHHHh
Confidence 555677 6643 33579999999999999876 322 1122222 4688999999999998
No 73
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.68 E-value=8.2e-06 Score=80.49 Aligned_cols=136 Identities=14% Similarity=0.045 Sum_probs=83.3
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhCCCe-EEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccC
Q 011724 285 SVLYVSFGSYAHASKNDIVEIALGLLLSEVS-FVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSA 363 (478)
Q Consensus 285 ~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~ 363 (478)
++|.+--||..+--...+..++++..+...+ .++.+.... .. +.+.+.+.....+.+.+ ...+++..+|
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~-------~~-~~i~~~~~~~~~~~~~~--~~~~~m~~aD 237 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF-------KG-KDLKEIYGDISEFEISY--DTHKALLEAE 237 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-------cH-HHHHHHHhcCCCcEEec--cHHHHHHhhh
Confidence 5888989988754445555455555543221 233332220 01 22222211111233332 4467899999
Q ss_pred cceeeeccCchhhHHHHhcCcceeccCcc--cchhHHHHHhhc--------------------------ccCHHHHHHHH
Q 011724 364 IGGFLTHCGWNSIQESIWCSVPLLCFPLL--TDQFTNRKLVKS--------------------------SITKEEVSEKI 415 (478)
Q Consensus 364 v~~~ItHGG~~s~~Eal~~GvP~l~~P~~--~DQ~~na~rv~~--------------------------~~t~~~l~~~v 415 (478)
+ .|+-.|-.|+ |+..+|+|||+ ++- .=|..||+++.+ .+|++.|.+++
T Consensus 238 l--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i 313 (347)
T PRK14089 238 F--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAY 313 (347)
T ss_pred H--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHH
Confidence 9 9999999999 99999999988 553 468889998883 57888888888
Q ss_pred HHHhCCCChHHHHHHHHHHHHHH
Q 011724 416 NRLMSGKSSDELRKNIKEVRKKL 438 (478)
Q Consensus 416 ~~ll~~~~~~~~r~~a~~l~~~~ 438 (478)
.+ .. ..+.++...++.+.+
T Consensus 314 ~~-~~---~~~~~~~~~~l~~~l 332 (347)
T PRK14089 314 KE-MD---REKFFKKSKELREYL 332 (347)
T ss_pred HH-HH---HHHHHHHHHHHHHHh
Confidence 77 22 344555555555544
No 74
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.67 E-value=2e-05 Score=78.18 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=75.5
Q ss_pred CceEEEEecccccC-CHHHHHHHHHHHhhC--CCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChH---h
Q 011724 284 GSVLYVSFGSYAHA-SKNDIVEIALGLLLS--EVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQI---D 357 (478)
Q Consensus 284 ~~~Vyvs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~---~ 357 (478)
.++.++.+|+.... ..+.+...+..+.+. +..++++-.+. ..+.+ ..+..++..++|+.+.+++|+. .
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~-----~~~~~-~~~~~~~~~~~~v~~~g~~~~~~l~~ 251 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGP-----LRDEL-EALIAELGLEDRVTLLGAKSQEEVRE 251 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCc-----cHHHH-HHHHHHcCCCCeEEECCcCChHHHHH
Confidence 34567777876532 233344444444443 33444433222 00001 1122222256789999999854 4
Q ss_pred hhhccCcceeee----------ccCchhhHHHHhcCcceeccCcccchhHHHHHhhc-----ccCHHHHHHHHHHHhCCC
Q 011724 358 VISHSAIGGFLT----------HCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS-----SITKEEVSEKINRLMSGK 422 (478)
Q Consensus 358 vL~~~~v~~~It----------HGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~-----~~t~~~l~~~v~~ll~~~ 422 (478)
++..+++ +|. -|..+++.||+++|+|+|+.+... ..+....-.. .-+.+++.++|.++++
T Consensus 252 ~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~-~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~-- 326 (355)
T cd03799 252 LLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG-IPELVEDGETGLLVPPGDPEALADAIERLLD-- 326 (355)
T ss_pred HHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC-cchhhhCCCceEEeCCCCHHHHHHHHHHHHh--
Confidence 7778888 555 233579999999999999876532 2221111101 3478999999999998
Q ss_pred ChHHH
Q 011724 423 SSDEL 427 (478)
Q Consensus 423 ~~~~~ 427 (478)
++..
T Consensus 327 -~~~~ 330 (355)
T cd03799 327 -DPEL 330 (355)
T ss_pred -CHHH
Confidence 6543
No 75
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.67 E-value=7.4e-05 Score=77.01 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=54.4
Q ss_pred cCCCeEEeeccChHhh---hhcc----Ccceeeecc---C-chhhHHHHhcCcceeccCcccchhHHHHHhhc-------
Q 011724 343 ISGRGLIVPWCSQIDV---ISHS----AIGGFLTHC---G-WNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS------- 404 (478)
Q Consensus 343 ~~~nv~v~~~ipq~~v---L~~~----~v~~~ItHG---G-~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------- 404 (478)
+.++|.+.+++++.++ ++.+ ++ ||.-. | ..++.||+++|+|+|+....+ +...+.+
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~lv 388 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANCRNGLLV 388 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEEEe
Confidence 5678888888886554 5544 56 87643 3 359999999999999876532 2222222
Q ss_pred -ccCHHHHHHHHHHHhCCCChHHHH
Q 011724 405 -SITKEEVSEKINRLMSGKSSDELR 428 (478)
Q Consensus 405 -~~t~~~l~~~v~~ll~~~~~~~~r 428 (478)
.-+.++++++|.++++ ++..+
T Consensus 389 ~~~d~~~la~~i~~ll~---~~~~~ 410 (439)
T TIGR02472 389 DVLDLEAIASALEDALS---DSSQW 410 (439)
T ss_pred CCCCHHHHHHHHHHHHh---CHHHH
Confidence 4578999999999998 66543
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.66 E-value=2.3e-05 Score=77.79 Aligned_cols=75 Identities=13% Similarity=0.231 Sum_probs=51.9
Q ss_pred cCCCeEEe-eccCh---HhhhhccCcceeee--c----cCchhhHHHHhcCcceeccCcccchh----HHHHHhhcccCH
Q 011724 343 ISGRGLIV-PWCSQ---IDVISHSAIGGFLT--H----CGWNSIQESIWCSVPLLCFPLLTDQF----TNRKLVKSSITK 408 (478)
Q Consensus 343 ~~~nv~v~-~~ipq---~~vL~~~~v~~~It--H----GG~~s~~Eal~~GvP~l~~P~~~DQ~----~na~rv~~~~t~ 408 (478)
..+++.+. .|+|+ ..+++.+++ +|. + |..+++.||+++|+|+|+.+...... .++ .+...-+.
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~~~~i~~~~~g-~~~~~~d~ 321 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGHAEEVLDGGTG-LLVPPGDP 321 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCChheeeeCCCc-EEEcCCCH
Confidence 56788887 45885 457888888 652 2 33568999999999999988754110 010 01114568
Q ss_pred HHHHHHHHHHhC
Q 011724 409 EEVSEKINRLMS 420 (478)
Q Consensus 409 ~~l~~~v~~ll~ 420 (478)
+++.+++.++++
T Consensus 322 ~~~~~~l~~l~~ 333 (366)
T cd03822 322 AALAEAIRRLLA 333 (366)
T ss_pred HHHHHHHHHHHc
Confidence 999999999998
No 77
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.66 E-value=2.2e-06 Score=85.89 Aligned_cols=134 Identities=15% Similarity=0.122 Sum_probs=80.1
Q ss_pred CCceEEEEecccccC-CHHHHHHHHHHHhhCCC-eEEEEECCCCCCCCccCCCChhhhhhhcc-CCCeEEeeccCh---H
Q 011724 283 RGSVLYVSFGSYAHA-SKNDIVEIALGLLLSEV-SFVWVLRPDIVSSDETDFLPVGFEEKIKI-SGRGLIVPWCSQ---I 356 (478)
Q Consensus 283 ~~~~Vyvs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~l~~~~~~~~~~-~~nv~v~~~ipq---~ 356 (478)
+++.|++++|..... ....+..+++++++... ++.++..+... ..+.+ ..+..++.. .+++.+.++.++ .
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~---~~~~l-~~~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR---TRPRI-REAGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC---hHHHH-HHHHHhhccCCCCEEEECCcCHHHHH
Confidence 345677777766543 34456778888776533 24444332200 00111 111111111 467887766553 4
Q ss_pred hhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHHHHhhc------ccCHHHHHHHHHHHhCCCChHHHHH
Q 011724 357 DVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS------SITKEEVSEKINRLMSGKSSDELRK 429 (478)
Q Consensus 357 ~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------~~t~~~l~~~v~~ll~~~~~~~~r~ 429 (478)
.++..+++ ||+-.| |.+.||+++|+|+|+++...+.+ ..++. .-+.++|.+++.++++ ++..++
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~~~---~~~~~g~~~~~~~~~~~i~~~i~~ll~---~~~~~~ 342 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTERP---ETVESGTNVLVGTDPEAILAAIEKLLS---DEFAYS 342 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCccc---hhhheeeEEecCCCHHHHHHHHHHHhc---Cchhhh
Confidence 56778888 999999 77889999999999987542211 11112 2257999999999998 554443
No 78
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.62 E-value=1.9e-05 Score=78.48 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=57.9
Q ss_pred cCCCeEEeeccCh-HhhhhccCcceeeecc----CchhhHHHHhcCcceeccCcccchhHHHHHhhc------ccCHHHH
Q 011724 343 ISGRGLIVPWCSQ-IDVISHSAIGGFLTHC----GWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS------SITKEEV 411 (478)
Q Consensus 343 ~~~nv~v~~~ipq-~~vL~~~~v~~~ItHG----G~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------~~t~~~l 411 (478)
..+++.+.++..+ ..++..+++ +|.-. ..+++.||+++|+|+|+.. ...+...+++ .-+.+++
T Consensus 243 ~~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~e~i~~~g~~~~~~~~~~~ 316 (360)
T cd04951 243 LSNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVATD----AGGVREVVGDSGLIVPISDPEAL 316 (360)
T ss_pred CCCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEec----CCChhhEecCCceEeCCCCHHHH
Confidence 4568888888754 678999998 65532 2578999999999999754 3344444433 5678899
Q ss_pred HHHHHHHhCCCChHHHHHHHHH
Q 011724 412 SEKINRLMSGKSSDELRKNIKE 433 (478)
Q Consensus 412 ~~~v~~ll~~~~~~~~r~~a~~ 433 (478)
++++.++++. ++.+++...+
T Consensus 317 ~~~i~~ll~~--~~~~~~~~~~ 336 (360)
T cd04951 317 ANKIDEILKM--SGEERDIIGA 336 (360)
T ss_pred HHHHHHHHhC--CHHHHHHHHH
Confidence 9999999841 4455544433
No 79
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.61 E-value=1.6e-05 Score=77.91 Aligned_cols=135 Identities=11% Similarity=0.152 Sum_probs=74.1
Q ss_pred CceEEEEecccccC-CHHHHHHHHHHHhhC--CCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccCh-Hhhh
Q 011724 284 GSVLYVSFGSYAHA-SKNDIVEIALGLLLS--EVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQ-IDVI 359 (478)
Q Consensus 284 ~~~Vyvs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq-~~vL 359 (478)
...+++..|+.... ..+.+...+..+.+. +.+++++ +.+ ... +.+ ....+++...+++.+.++.+. ..++
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~-~~~---~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~ 261 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVIL-GDG-PLR---EEL-EALAKELGLADRVHFLGFQSNPYPYL 261 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEE-cCC-ccH---HHH-HHHHHhcCCCccEEEecccCCHHHHH
Confidence 34677788877632 223333333333332 3444443 322 000 000 112222234678888888864 5689
Q ss_pred hccCcceeee--c--cCchhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccCHHHH---HHHHHHHhCCCCh
Q 011724 360 SHSAIGGFLT--H--CGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SITKEEV---SEKINRLMSGKSS 424 (478)
Q Consensus 360 ~~~~v~~~It--H--GG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t~~~l---~~~v~~ll~~~~~ 424 (478)
..+++ +|. + |..+++.||+++|+|+|+.... .....+.+ .-+.+.+ .+++.+++. +
T Consensus 262 ~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~---~ 332 (353)
T cd03811 262 KAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPVGDEAALAAAALALLDLLL---D 332 (353)
T ss_pred HhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccC---C
Confidence 99998 663 2 3356899999999999986554 33334433 4566677 455555555 5
Q ss_pred HHHHHHHHH
Q 011724 425 DELRKNIKE 433 (478)
Q Consensus 425 ~~~r~~a~~ 433 (478)
++.+++.++
T Consensus 333 ~~~~~~~~~ 341 (353)
T cd03811 333 PELRERLAA 341 (353)
T ss_pred hHHHHHHHH
Confidence 554444333
No 80
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.56 E-value=1e-05 Score=81.14 Aligned_cols=131 Identities=12% Similarity=0.126 Sum_probs=79.3
Q ss_pred CceEEEEecccc---cCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccC---hHh
Q 011724 284 GSVLYVSFGSYA---HASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCS---QID 357 (478)
Q Consensus 284 ~~~Vyvs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ip---q~~ 357 (478)
++.|++++=-.. ....+.+..+++++.+.+.++++....... ....+.+.+.......+++.+.+-++ ...
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p---~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~ 277 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA---GSRIINEAIEEYVNEHPNFRLFKSLGQERYLS 277 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC---CchHHHHHHHHHhcCCCCEEEECCCChHHHHH
Confidence 457777774332 234667889999998887666665532200 00001111111100146788886554 567
Q ss_pred hhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHHHHhhc-ccCHHHHHHHHHHHhC
Q 011724 358 VISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS-SITKEEVSEKINRLMS 420 (478)
Q Consensus 358 vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~-~~t~~~l~~~v~~ll~ 420 (478)
+++++++ +||-++.+- .||.+.|+|+|.+--..+-...+.-+.. ..++++|.+++.+++.
T Consensus 278 Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~~R~e~~~~g~nvl~vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 278 LLKNADA--VIGNSSSGI-IEAPSFGVPTINIGTRQKGRLRADSVIDVDPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHhCCE--EEEcChhHH-HhhhhcCCCEEeecCCchhhhhcCeEEEeCCCHHHHHHHHHHHhC
Confidence 8889999 998875555 9999999999987532211111111111 5689999999999664
No 81
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.52 E-value=3.5e-05 Score=75.84 Aligned_cols=122 Identities=9% Similarity=0.032 Sum_probs=72.8
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhh-ccCCCeEEeeccChH---hhhhcc
Q 011724 287 LYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKI-KISGRGLIVPWCSQI---DVISHS 362 (478)
Q Consensus 287 Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~-~~~~nv~v~~~ipq~---~vL~~~ 362 (478)
+.+..|..... .-...+++++++.+.+++++-.+. ..+.+ ....... ...+++.+.+++++. .+++.+
T Consensus 173 ~i~~~Gr~~~~--Kg~~~li~~~~~~~~~l~i~G~~~-----~~~~~-~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRISPE--KGPHLAIRAARRAGIPLKLAGPVS-----DPDYF-YREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeeccc--cCHHHHHHHHHhcCCeEEEEeCCC-----CHHHH-HHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 44556766422 223456777777887776654432 00000 0111110 025789999999875 468888
Q ss_pred Ccceeee--ccCc-hhhHHHHhcCcceeccCcccchhHHHHHhhc------ccCHHHHHHHHHHHhC
Q 011724 363 AIGGFLT--HCGW-NSIQESIWCSVPLLCFPLLTDQFTNRKLVKS------SITKEEVSEKINRLMS 420 (478)
Q Consensus 363 ~v~~~It--HGG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------~~t~~~l~~~v~~ll~ 420 (478)
++-++-+ +-|+ .++.||+++|+|+|+....+ +...+.+ .-..+++++++.+++.
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~~~g~l~~~~~~l~~~l~~l~~ 307 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDGVTGFLVDSVEELAAAVARADR 307 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCCCcEEEeCCHHHHHHHHHHHhc
Confidence 8833333 2343 58999999999999876532 2222222 2238999999999875
No 82
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.51 E-value=0.00024 Score=70.53 Aligned_cols=128 Identities=14% Similarity=0.141 Sum_probs=73.0
Q ss_pred CceEEEEecccccC-CHHHHHHHHHHHhhC--CCeEEEEECCCCCCCCccCCCChh---hhhhhccCCCeEEeeccC-hH
Q 011724 284 GSVLYVSFGSYAHA-SKNDIVEIALGLLLS--EVSFVWVLRPDIVSSDETDFLPVG---FEEKIKISGRGLIVPWCS-QI 356 (478)
Q Consensus 284 ~~~Vyvs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~l~~~---~~~~~~~~~nv~v~~~ip-q~ 356 (478)
...+++..|..... ..+.+...+..+.+. +.+++++-.+. . .+.+... ...+....++|.+.+|.+ ..
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~--~---~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 258 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ--G---RRFYYAELLELIKRLGLQDRVTFVGHCSDMP 258 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc--c---cchHHHHHHHHHHHcCCcceEEEcCCcccHH
Confidence 34567777876533 344455555555553 34444443222 0 0001011 111112457899998865 46
Q ss_pred hhhhccCcceeee--ccC-chhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccCHHHHHHHHHHHhC
Q 011724 357 DVISHSAIGGFLT--HCG-WNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SITKEEVSEKINRLMS 420 (478)
Q Consensus 357 ~vL~~~~v~~~It--HGG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t~~~l~~~v~~ll~ 420 (478)
.++..+++-++-+ +-| .+++.||+++|+|+|+.-..+ +...+.+ .-+.+++.++|.+++.
T Consensus 259 ~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 259 AAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred HHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 6888999833333 123 369999999999999876533 2222222 5588999999976654
No 83
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.51 E-value=0.00082 Score=72.69 Aligned_cols=130 Identities=10% Similarity=0.059 Sum_probs=71.8
Q ss_pred CCEEEEEcCCC-------------ccCHHHHHHHHHH--------HHhCCC----eEEEEeCCchhhhhhhhcCCCCCcc
Q 011724 9 KPHAIAICYPL-------------QGHVIPFVNLALK--------LASSGF----TITFVNTHSIHHQITKAQSNGDEDD 63 (478)
Q Consensus 9 ~~~il~~~~~~-------------~GH~~p~l~La~~--------L~~rGh----~Vt~~~~~~~~~~~~~~~~~~~~~~ 63 (478)
.|||++++..+ .|+..=.+.+|++ |+++|| +|+++|--..-..-. ......
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~---~~~~~~- 330 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGT---TCNQRL- 330 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccc---cccccc-
Confidence 48998887554 4777788888887 468899 777988643211100 000000
Q ss_pred hhccccCCCCCeEEEEcCCCCCCC--CC---CCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCc--hhhH
Q 011724 64 IFAGARKAGLDIRYATVSDGLPLN--FD---RSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFF--VWSS 136 (478)
Q Consensus 64 ~~~~~~~~~~~i~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~--~~~~ 136 (478)
......++.+...+|.+.... .. +..++...+..+.. ...+.+..... .+||+|++.... ..+.
T Consensus 331 ---e~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~---~~~~~~~~~~~---~~pDlIHahy~d~glva~ 401 (784)
T TIGR02470 331 ---EKVYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAE---DAEKEILAELQ---GKPDLIIGNYSDGNLVAS 401 (784)
T ss_pred ---ccccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHH---HHHHHHHHhcC---CCCCEEEECCCchHHHHH
Confidence 000112377877877554321 11 11222223333322 22222222222 579999998643 5578
Q ss_pred HHHHHcCCccEEEec
Q 011724 137 MIAKKYNLVNISFWT 151 (478)
Q Consensus 137 ~~A~~lgiP~v~~~~ 151 (478)
.+++.+|||.+....
T Consensus 402 lla~~lgVP~v~t~H 416 (784)
T TIGR02470 402 LLARKLGVTQCTIAH 416 (784)
T ss_pred HHHHhcCCCEEEECC
Confidence 999999999887643
No 84
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.48 E-value=6.9e-05 Score=74.31 Aligned_cols=89 Identities=16% Similarity=0.244 Sum_probs=61.3
Q ss_pred cCCCeEEeeccChH---hhhhccCcceeeec----cCchhhHHHHhcCcceeccCcc--cchhHHHHHhhcccCHHHHHH
Q 011724 343 ISGRGLIVPWCSQI---DVISHSAIGGFLTH----CGWNSIQESIWCSVPLLCFPLL--TDQFTNRKLVKSSITKEEVSE 413 (478)
Q Consensus 343 ~~~nv~v~~~ipq~---~vL~~~~v~~~ItH----GG~~s~~Eal~~GvP~l~~P~~--~DQ~~na~rv~~~~t~~~l~~ 413 (478)
..+++.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+.... .|...+...+...-+.+++.+
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 328 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAGDAALYFDPLDPEALAA 328 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCCccceecCceeeeCCCCHHHHHH
Confidence 56789999999865 56788888 5432 3346899999999999986652 233222221112557899999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHH
Q 011724 414 KINRLMSGKSSDELRKNIKEVRK 436 (478)
Q Consensus 414 ~v~~ll~~~~~~~~r~~a~~l~~ 436 (478)
++.+++. |++.+++..+-+.
T Consensus 329 ~i~~l~~---~~~~~~~~~~~~~ 348 (365)
T cd03809 329 AIERLLE---DPALREELRERGL 348 (365)
T ss_pred HHHHHhc---CHHHHHHHHHHHH
Confidence 9999998 7776665554443
No 85
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.48 E-value=9.4e-05 Score=73.52 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=57.1
Q ss_pred cCCCeEEeeccCh-HhhhhccCcceeeec----cCchhhHHHHhcCcceeccCcccc--hhHH-HHHhhcccCHHHHHHH
Q 011724 343 ISGRGLIVPWCSQ-IDVISHSAIGGFLTH----CGWNSIQESIWCSVPLLCFPLLTD--QFTN-RKLVKSSITKEEVSEK 414 (478)
Q Consensus 343 ~~~nv~v~~~ipq-~~vL~~~~v~~~ItH----GG~~s~~Eal~~GvP~l~~P~~~D--Q~~n-a~rv~~~~t~~~l~~~ 414 (478)
..+++.+.++..+ ..++..+++ +|.- |-.+++.||+++|+|+|+....+- ...+ +..+...-+.++++++
T Consensus 247 ~~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~ 324 (358)
T cd03812 247 LEDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEE 324 (358)
T ss_pred CCCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHH
Confidence 5678888887544 678999998 6642 445799999999999998765432 2222 1111114456999999
Q ss_pred HHHHhCCCChHHHHHH
Q 011724 415 INRLMSGKSSDELRKN 430 (478)
Q Consensus 415 v~~ll~~~~~~~~r~~ 430 (478)
|.++++ +++.+++
T Consensus 325 i~~l~~---~~~~~~~ 337 (358)
T cd03812 325 ILKLKS---EDRRERS 337 (358)
T ss_pred HHHHHh---Ccchhhh
Confidence 999999 6665543
No 86
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.48 E-value=0.00022 Score=71.25 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=57.0
Q ss_pred cCCCeEEeeccChH---hhhhccCcceeeec----------cCchhhHHHHhcCcceeccCcccchhHHHHHhhc-----
Q 011724 343 ISGRGLIVPWCSQI---DVISHSAIGGFLTH----------CGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS----- 404 (478)
Q Consensus 343 ~~~nv~v~~~ipq~---~vL~~~~v~~~ItH----------GG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~----- 404 (478)
..+++.+.+++|+. .+++.+++ +|.- |-.+++.||+++|+|+|+-+... ++..+.+
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~ 316 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDGETGL 316 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecCCeeE
Confidence 46789888999864 45888888 6532 23579999999999999887643 3333322
Q ss_pred ---ccCHHHHHHHHHHHhCCCChHHHHH
Q 011724 405 ---SITKEEVSEKINRLMSGKSSDELRK 429 (478)
Q Consensus 405 ---~~t~~~l~~~v~~ll~~~~~~~~r~ 429 (478)
.-+.+++.+++.++++ +++.++
T Consensus 317 ~~~~~d~~~l~~~i~~l~~---~~~~~~ 341 (367)
T cd05844 317 LVPEGDVAALAAALGRLLA---DPDLRA 341 (367)
T ss_pred EECCCCHHHHHHHHHHHHc---CHHHHH
Confidence 4578999999999998 665443
No 87
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.44 E-value=0.00039 Score=71.20 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=63.3
Q ss_pred EeeccChHhhhhccCcceeeec----cCchhhHHHHhcCcceeccCccc----chhHHHHHhhcccCHHHHHHHHHHHhC
Q 011724 349 IVPWCSQIDVISHSAIGGFLTH----CGWNSIQESIWCSVPLLCFPLLT----DQFTNRKLVKSSITKEEVSEKINRLMS 420 (478)
Q Consensus 349 v~~~ipq~~vL~~~~v~~~ItH----GG~~s~~Eal~~GvP~l~~P~~~----DQ~~na~rv~~~~t~~~l~~~v~~ll~ 420 (478)
+.++.+..+++...++ ||.= +=.+++.||+++|+|+|+.-... ++..|+.. .-+.+++.+++.++|+
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~~~v~~~~ng~~---~~~~~~~a~ai~~~l~ 362 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPSNEFFKQFPNCRT---YDDGKGFVRATLKALA 362 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCCcceeecCCceEe---cCCHHHHHHHHHHHHc
Confidence 3466677779999988 8876 34578999999999999986532 23334332 2468899999999997
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCc
Q 011724 421 GKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQFLTP 464 (478)
Q Consensus 421 ~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~~~~ 464 (478)
++ ....+.+++ . .-|-+...+++++.+.-.++
T Consensus 363 ~~-~~~~~~~a~-------~----~~SWe~~~~~l~~~~~~~~~ 394 (462)
T PLN02846 363 EE-PAPLTDAQR-------H----ELSWEAATERFLRVADLDLP 394 (462)
T ss_pred cC-chhHHHHHH-------H----hCCHHHHHHHHHHHhccCCc
Confidence 32 112222111 1 13445566666666665443
No 88
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.42 E-value=0.00053 Score=69.18 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=70.0
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhC--CCeEEEEECCCCCCCCccCCCChhhhh---hhcc-CCCeEEe-eccCh---
Q 011724 286 VLYVSFGSYAHASKNDIVEIALGLLLS--EVSFVWVLRPDIVSSDETDFLPVGFEE---KIKI-SGRGLIV-PWCSQ--- 355 (478)
Q Consensus 286 ~Vyvs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~l~~~~~~---~~~~-~~nv~v~-~~ipq--- 355 (478)
.+++..|.... ..-+..+++++++. +.+++++.++.. ...+-+.+.+ .+.. ..++... +++++
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPD-----TPEVAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCC-----cHHHHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 45666777653 22344555566553 455555544330 0000011111 1001 2245543 67774
Q ss_pred HhhhhccCcceeeec----cCchhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccCH------HHHHHHHHH
Q 011724 356 IDVISHSAIGGFLTH----CGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SITK------EEVSEKINR 417 (478)
Q Consensus 356 ~~vL~~~~v~~~ItH----GG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t~------~~l~~~v~~ 417 (478)
..++..+|+ +|.= |...++.||+++|+|+|+.... .+...+++ .-+. +++.++|.+
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHH
Confidence 456888898 7642 2235779999999999987653 23333322 2233 899999999
Q ss_pred HhCCCChHHHH
Q 011724 418 LMSGKSSDELR 428 (478)
Q Consensus 418 ll~~~~~~~~r 428 (478)
+++ +++-+
T Consensus 349 l~~---~~~~~ 356 (388)
T TIGR02149 349 LLA---DPELA 356 (388)
T ss_pred HHh---CHHHH
Confidence 998 65443
No 89
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.39 E-value=0.001 Score=66.89 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=66.0
Q ss_pred cCCCeEEeeccC-hHhhhhccCcceee--ec--cCchhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccCHH
Q 011724 343 ISGRGLIVPWCS-QIDVISHSAIGGFL--TH--CGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SITKE 409 (478)
Q Consensus 343 ~~~nv~v~~~ip-q~~vL~~~~v~~~I--tH--GG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t~~ 409 (478)
...++.+.++.. ...+++.+|+ +| ++ |-.+++.||+++|+|+|+..... +..-+++ .-+.+
T Consensus 253 ~~~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~~d~~ 326 (374)
T TIGR03088 253 LAHLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVPPGDAV 326 (374)
T ss_pred CcceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeCCCCHH
Confidence 345677766654 4678999999 66 33 34579999999999999976532 3333322 34789
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011724 410 EVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQ 460 (478)
Q Consensus 410 ~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~ 460 (478)
+++++|.++++ +++.++ ++++..++...+.-+....++++++-+.
T Consensus 327 ~la~~i~~l~~---~~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 327 ALARALQPYVS---DPAARR---AHGAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred HHHHHHHHHHh---CHHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999998 654433 2222222222223454555555555443
No 90
>PLN00142 sucrose synthase
Probab=98.34 E-value=0.00039 Score=75.17 Aligned_cols=79 Identities=10% Similarity=0.188 Sum_probs=48.8
Q ss_pred cCCCeEEeec----cChHhhhh----ccCcceeee---ccCch-hhHHHHhcCcceeccCcccchhHHHHHhhc------
Q 011724 343 ISGRGLIVPW----CSQIDVIS----HSAIGGFLT---HCGWN-SIQESIWCSVPLLCFPLLTDQFTNRKLVKS------ 404 (478)
Q Consensus 343 ~~~nv~v~~~----ipq~~vL~----~~~v~~~It---HGG~~-s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------ 404 (478)
+.++|.+.+. .+..++.. .+++ ||. +-|+| ++.||+++|+|+|+.... ....-|++
T Consensus 640 L~~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~dG~tG~L 713 (815)
T PLN00142 640 LKGQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEIIVDGVSGFH 713 (815)
T ss_pred CCCcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCCCcEEE
Confidence 4567776543 33344443 2355 764 34554 899999999999886543 33444444
Q ss_pred --ccCHHHHHHHHHHH----hCCCChHHHHHH
Q 011724 405 --SITKEEVSEKINRL----MSGKSSDELRKN 430 (478)
Q Consensus 405 --~~t~~~l~~~v~~l----l~~~~~~~~r~~ 430 (478)
.-+.++++++|.++ +. +++.+++
T Consensus 714 V~P~D~eaLA~aI~~lLekLl~---Dp~lr~~ 742 (815)
T PLN00142 714 IDPYHGDEAANKIADFFEKCKE---DPSYWNK 742 (815)
T ss_pred eCCCCHHHHHHHHHHHHHHhcC---CHHHHHH
Confidence 34678888887765 45 5555544
No 91
>PLN02275 transferase, transferring glycosyl groups
Probab=98.32 E-value=0.001 Score=66.92 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=46.8
Q ss_pred CCeEEe-eccChHh---hhhccCcceeee-c-----cC-chhhHHHHhcCcceeccCcccchhHHHHHhhc------ccC
Q 011724 345 GRGLIV-PWCSQID---VISHSAIGGFLT-H-----CG-WNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS------SIT 407 (478)
Q Consensus 345 ~nv~v~-~~ipq~~---vL~~~~v~~~It-H-----GG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------~~t 407 (478)
+|+.+. .|+|+.+ +|+.+|+ +|. + -| -+++.||+++|+|+|+... ..+...+++ .-+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g~~G~lv~~ 359 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDGKNGLLFSS 359 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCCCCeEEECC
Confidence 356665 4788755 4889999 763 1 12 3579999999999998653 224444444 225
Q ss_pred HHHHHHHHHHHh
Q 011724 408 KEEVSEKINRLM 419 (478)
Q Consensus 408 ~~~l~~~v~~ll 419 (478)
.++++++|.++|
T Consensus 360 ~~~la~~i~~l~ 371 (371)
T PLN02275 360 SSELADQLLELL 371 (371)
T ss_pred HHHHHHHHHHhC
Confidence 788888888775
No 92
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.25 E-value=0.0013 Score=66.97 Aligned_cols=72 Identities=10% Similarity=0.174 Sum_probs=53.2
Q ss_pred cCCCeEEeeccChH---hhhhccCcceeee--c-------cCc-hhhHHHHhcCcceeccCcccchhHHHHHhhc-----
Q 011724 343 ISGRGLIVPWCSQI---DVISHSAIGGFLT--H-------CGW-NSIQESIWCSVPLLCFPLLTDQFTNRKLVKS----- 404 (478)
Q Consensus 343 ~~~nv~v~~~ipq~---~vL~~~~v~~~It--H-------GG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~----- 404 (478)
+.++|.+.+|+|+. .++..+++ ||. + -|. +++.||+++|+|+|+....+ ....+++
T Consensus 277 l~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~ 350 (406)
T PRK15427 277 LEDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGW 350 (406)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceE
Confidence 55789999999975 46788888 664 2 344 57899999999999875532 2222222
Q ss_pred ---ccCHHHHHHHHHHHhC
Q 011724 405 ---SITKEEVSEKINRLMS 420 (478)
Q Consensus 405 ---~~t~~~l~~~v~~ll~ 420 (478)
.-+.++++++|.++++
T Consensus 351 lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 351 LVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 4578999999999996
No 93
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.24 E-value=0.00094 Score=67.14 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=64.1
Q ss_pred cCCCeEEeecc--Ch---HhhhhccCcceeeecc---C-chhhHHHHhcCcceeccCcccchhHHHHHhhc------ccC
Q 011724 343 ISGRGLIVPWC--SQ---IDVISHSAIGGFLTHC---G-WNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS------SIT 407 (478)
Q Consensus 343 ~~~nv~v~~~i--pq---~~vL~~~~v~~~ItHG---G-~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------~~t 407 (478)
..+++.+.++. ++ ..+++.+++ |+.-. | ..++.||+++|+|+|+..... ....+.+ .-+
T Consensus 250 ~~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~~~ 323 (372)
T cd03792 250 GDPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLVDT 323 (372)
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEeCC
Confidence 45678888776 43 357788888 87533 2 359999999999999876432 1222222 235
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011724 408 KEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQ 460 (478)
Q Consensus 408 ~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~ 460 (478)
.++++.++.+++. +++.++...+-+.+ ...+.-+-...++++++.+.
T Consensus 324 ~~~~a~~i~~ll~---~~~~~~~~~~~a~~---~~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 324 VEEAAVRILYLLR---DPELRRKMGANARE---HVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred cHHHHHHHHHHHc---CHHHHHHHHHHHHH---HHHHHcCHHHHHHHHHHHHH
Confidence 6788899999998 66554433222222 11122444555666665544
No 94
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.21 E-value=3.9e-05 Score=76.21 Aligned_cols=138 Identities=13% Similarity=0.162 Sum_probs=79.8
Q ss_pred CCCceEEEEecccccCC----HHHHHHHHHHHhhC-CCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccC--
Q 011724 282 PRGSVLYVSFGSYAHAS----KNDIVEIALGLLLS-EVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCS-- 354 (478)
Q Consensus 282 ~~~~~Vyvs~Gs~~~~~----~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ip-- 354 (478)
.+++.+++++=...... ...+..++.++.+. +.++||.+...+. ......+.+..-+|+.+++.++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~-------~~~~i~~~l~~~~~v~~~~~l~~~ 250 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR-------GSDIIIEKLKKYDNVRLIEPLGYE 250 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH-------HHHHHHHHHTT-TTEEEE----HH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch-------HHHHHHHHhcccCCEEEECCCCHH
Confidence 45678999884444333 33455667777766 7789998864300 0011222211115898886665
Q ss_pred -hHhhhhccCcceeeeccCchhhH-HHHhcCcceeccCcccchhHHHHHhhc---ccCHHHHHHHHHHHhCCCChHHHHH
Q 011724 355 -QIDVISHSAIGGFLTHCGWNSIQ-ESIWCSVPLLCFPLLTDQFTNRKLVKS---SITKEEVSEKINRLMSGKSSDELRK 429 (478)
Q Consensus 355 -q~~vL~~~~v~~~ItHGG~~s~~-Eal~~GvP~l~~P~~~DQ~~na~rv~~---~~t~~~l~~~v~~ll~~~~~~~~r~ 429 (478)
...+|+++++ +||-.| ++. ||.+.|+|+|.+=...+.+..-.+-.. ..++++|.+++++++. ++.+.+
T Consensus 251 ~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvlv~~~~~~I~~ai~~~l~---~~~~~~ 323 (346)
T PF02350_consen 251 EYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQEGRERGSNVLVGTDPEAIIQAIEKALS---DKDFYR 323 (346)
T ss_dssp HHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-HHHHHTTSEEEETSSHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCHHHHhhcceEEeCCCHHHHHHHHHHHHh---ChHHHH
Confidence 5778899999 999999 566 999999999999333333333322222 5789999999999997 544444
Q ss_pred HHHH
Q 011724 430 NIKE 433 (478)
Q Consensus 430 ~a~~ 433 (478)
+...
T Consensus 324 ~~~~ 327 (346)
T PF02350_consen 324 KLKN 327 (346)
T ss_dssp HHHC
T ss_pred hhcc
Confidence 4433
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.21 E-value=0.0059 Score=65.93 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=57.8
Q ss_pred cCCCeEEeeccCh-HhhhhccCcceeee---ccCc-hhhHHHHhcCcceeccCcccchhHHHHHhhc----------ccC
Q 011724 343 ISGRGLIVPWCSQ-IDVISHSAIGGFLT---HCGW-NSIQESIWCSVPLLCFPLLTDQFTNRKLVKS----------SIT 407 (478)
Q Consensus 343 ~~~nv~v~~~ipq-~~vL~~~~v~~~It---HGG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~----------~~t 407 (478)
+.++|.+.+|.+. ..++..+++ ||. +.|+ +++.||+++|+|+|+.... .+...|.+ ..+
T Consensus 572 L~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg~~GlLv~~~d~~ 645 (694)
T PRK15179 572 MGERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEGVTGLTLPADTVT 645 (694)
T ss_pred CCCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCCCCEEEeCCCCCC
Confidence 5678999999875 568888998 664 5564 7999999999999997653 23333333 334
Q ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHH
Q 011724 408 KEEVSEKINRLMSG-KSSDELRKNIKEV 434 (478)
Q Consensus 408 ~~~l~~~v~~ll~~-~~~~~~r~~a~~l 434 (478)
.+++.+++.+++.. ..++.+++++++.
T Consensus 646 ~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 646 APDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred hHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 45777777666541 1156676665544
No 96
>PLN02949 transferase, transferring glycosyl groups
Probab=98.20 E-value=0.0082 Score=62.12 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=65.5
Q ss_pred cCCCeEEeeccChH---hhhhccCcceeee---ccCch-hhHHHHhcCcceeccCccc---chh------HHHHHhhccc
Q 011724 343 ISGRGLIVPWCSQI---DVISHSAIGGFLT---HCGWN-SIQESIWCSVPLLCFPLLT---DQF------TNRKLVKSSI 406 (478)
Q Consensus 343 ~~~nv~v~~~ipq~---~vL~~~~v~~~It---HGG~~-s~~Eal~~GvP~l~~P~~~---DQ~------~na~rv~~~~ 406 (478)
+.++|.+.+++|+. .+|+.+++ +|+ +-|+| ++.||+++|+|+|+....+ |.- .++.. .-
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l---~~ 407 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFL---AT 407 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCccccc---CC
Confidence 56789999999854 46778888 663 23443 7999999999999987543 111 12211 13
Q ss_pred CHHHHHHHHHHHhCCC-C-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011724 407 TKEEVSEKINRLMSGK-S-SDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQ 460 (478)
Q Consensus 407 t~~~l~~~v~~ll~~~-~-~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~ 460 (478)
+.+++++++.++++++ + ..++.+++++-.++ -|.+...+++.+.+.
T Consensus 408 ~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~--------FS~e~~~~~~~~~i~ 455 (463)
T PLN02949 408 TVEEYADAILEVLRMRETERLEIAAAARKRANR--------FSEQRFNEDFKDAIR 455 (463)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------cCHHHHHHHHHHHHH
Confidence 7899999999999721 0 11333444433222 454555666655544
No 97
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.15 E-value=0.00012 Score=74.47 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=57.2
Q ss_pred cCCCeEEeeccCh-HhhhhccCcceee--ec--cCc-hhhHHHHhcCcceeccCcccchh----HHHHHhhcccCHHHHH
Q 011724 343 ISGRGLIVPWCSQ-IDVISHSAIGGFL--TH--CGW-NSIQESIWCSVPLLCFPLLTDQF----TNRKLVKSSITKEEVS 412 (478)
Q Consensus 343 ~~~nv~v~~~ipq-~~vL~~~~v~~~I--tH--GG~-~s~~Eal~~GvP~l~~P~~~DQ~----~na~rv~~~~t~~~l~ 412 (478)
...+|.+.+++++ ..+++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .++.. . .-+.++++
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i~~~~~~g~l-v-~~~~~~la 353 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGIDALPGAELL-V-AADPADFA 353 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccccccCCcceE-e-CCCHHHHH
Confidence 3467888999985 568889998 66 32 454 46999999999999998643321 11111 1 35889999
Q ss_pred HHHHHHhCCCChHHHHH
Q 011724 413 EKINRLMSGKSSDELRK 429 (478)
Q Consensus 413 ~~v~~ll~~~~~~~~r~ 429 (478)
++|.++++ |++.++
T Consensus 354 ~ai~~ll~---~~~~~~ 367 (397)
T TIGR03087 354 AAILALLA---NPAERE 367 (397)
T ss_pred HHHHHHHc---CHHHHH
Confidence 99999998 665443
No 98
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=0.0052 Score=60.86 Aligned_cols=307 Identities=13% Similarity=0.089 Sum_probs=171.0
Q ss_pred CCCccCHHHHHHHHHHHHhC--CCeEEEEe-CCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCCCCC
Q 011724 17 YPLQGHVIPFVNLALKLASS--GFTITFVN-THSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRSLN 93 (478)
Q Consensus 17 ~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 93 (478)
.-+.|-++-.++|.++|.++ +..|++-+ ++...+.++ +.. + ..+...-+|-..+
T Consensus 56 aaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~---~~~-------~-----~~v~h~YlP~D~~-------- 112 (419)
T COG1519 56 AASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAA---ALF-------G-----DSVIHQYLPLDLP-------- 112 (419)
T ss_pred ecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHH---HHc-------C-----CCeEEEecCcCch--------
Confidence 44679999999999999998 88888888 677777776 320 1 1344343442211
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhh--HHHHHHcCCccEEEecchhHHHHHHHhhhhhhhcCC
Q 011724 94 HDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWS--SMIAKKYNLVNISFWTEPALVLTLYYHMDLLRSHGH 171 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 171 (478)
.. ++.+++. .+||++|.-....|. ..-+++.|||.+.+..=
T Consensus 113 --~~-----------v~rFl~~-----~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR------------------- 155 (419)
T COG1519 113 --IA-----------VRRFLRK-----WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR------------------- 155 (419)
T ss_pred --HH-----------HHHHHHh-----cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------------
Confidence 11 2334555 459998887766554 45577899999998420
Q ss_pred CCCCCCCCCccccCCCCCCCCccccchhhhhcCCchHHHHHHHHHhhhhccccEEEecChhhhcHHHHHHHHhcC-C-cc
Q 011724 172 FASTDNREDTIDYIPGVRAIERKDLMSYLQATDTSTVVHRIIQKAFEDVKRVDFILCNTVHELESETISALHQKQ-P-TY 249 (478)
Q Consensus 172 ~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~-p-~~ 249 (478)
+ . .+....|.. ...+.+ ..+.+.+.++..+..+-+ ...... + +.
T Consensus 156 ----------L---S------~rS~~~y~k----~~~~~~------~~~~~i~li~aQse~D~~-----Rf~~LGa~~v~ 201 (419)
T COG1519 156 ----------L---S------DRSFARYAK----LKFLAR------LLFKNIDLILAQSEEDAQ-----RFRSLGAKPVV 201 (419)
T ss_pred ----------e---c------hhhhHHHHH----HHHHHH------HHHHhcceeeecCHHHHH-----HHHhcCCcceE
Confidence 0 0 000000000 011111 123456778887765333 333333 3 88
Q ss_pred ccccCCCCCCCCCCCCCCCCChh---hHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCC--CeEEEEECCCC
Q 011724 250 AIGPIFPAGFTKSLVPTSLWSES---ECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSE--VSFVWVLRPDI 324 (478)
Q Consensus 250 ~vGp~~~~~~~~~~~~~~l~~~~---~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~ 324 (478)
.+|.+-...... ..+ .. .+...++.. + -+.+..+|.. ...+..-....++.+.. ..+||+=.+..
T Consensus 202 v~GNlKfd~~~~----~~~--~~~~~~~r~~l~~~--r-~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHpE 271 (419)
T COG1519 202 VTGNLKFDIEPP----PQL--AAELAALRRQLGGH--R-PVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHPE 271 (419)
T ss_pred EecceeecCCCC----hhh--HHHHHHHHHhcCCC--C-ceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCChh
Confidence 888886543311 111 22 233333332 3 2666666633 34444555666666543 34445433221
Q ss_pred CCCC-----ccCCCChhhhhhh---ccCCCeEEeeccC-hHhhhhccCc----ceeeeccCchhhHHHHhcCcceeccCc
Q 011724 325 VSSD-----ETDFLPVGFEEKI---KISGRGLIVPWCS-QIDVISHSAI----GGFLTHCGWNSIQESIWCSVPLLCFPL 391 (478)
Q Consensus 325 ~~~~-----~~~~l~~~~~~~~---~~~~nv~v~~~ip-q~~vL~~~~v----~~~ItHGG~~s~~Eal~~GvP~l~~P~ 391 (478)
.+.. ....+......+. ....+|.+.+-+- ...++.-+++ |-|+-+||+| ..|++++|+|++.=|+
T Consensus 272 Rf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~ 350 (419)
T COG1519 272 RFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPY 350 (419)
T ss_pred hHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCc
Confidence 1100 0000000000000 0123566666654 4445555554 4456799987 6899999999999999
Q ss_pred ccchhHHHHHhhc-----cc-CHHHHHHHHHHHhCCCChHHHHHHH
Q 011724 392 LTDQFTNRKLVKS-----SI-TKEEVSEKINRLMSGKSSDELRKNI 431 (478)
Q Consensus 392 ~~DQ~~na~rv~~-----~~-t~~~l~~~v~~ll~~~~~~~~r~~a 431 (478)
..-|.+-++++.. .+ +++.|.+++..++. |++.|++.
T Consensus 351 ~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~---~~~~r~~~ 393 (419)
T COG1519 351 TFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLA---DEDKREAY 393 (419)
T ss_pred cccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhcC---CHHHHHHH
Confidence 9999999999988 23 36777888888887 44444443
No 99
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.11 E-value=0.0023 Score=66.78 Aligned_cols=181 Identities=13% Similarity=0.143 Sum_probs=96.4
Q ss_pred HHHhcC-CccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHh--hC--CCe
Q 011724 241 ALHQKQ-PTYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLL--LS--EVS 315 (478)
Q Consensus 241 ~~~~~~-p~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~--~~--~~~ 315 (478)
+++... |+.|||=.+.+.... .++.++..+-+.-.+++++|-+-.||-.+--...+..++++.+ .. +.+
T Consensus 375 ~y~~~gv~v~yVGHPL~d~i~~------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~ 448 (608)
T PRK01021 375 LFKDSPLRTVYLGHPLVETISS------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQ 448 (608)
T ss_pred HHHhcCCCeEEECCcHHhhccc------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeE
Confidence 444444 489999777654211 1013444444444446678989999987544445556666666 32 345
Q ss_pred EEEEECCCCCCCCccCCCChhhhhhhccCC--CeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcc-
Q 011724 316 FVWVLRPDIVSSDETDFLPVGFEEKIKISG--RGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLL- 392 (478)
Q Consensus 316 ~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~--nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~- 392 (478)
+++..... ...+.+.+.++..+ .+.++.--...++++.|++ .+.-.|- -+.|+...|+|||++=-.
T Consensus 449 fvvp~a~~--------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s 517 (608)
T PRK01021 449 LLVSSANP--------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLR 517 (608)
T ss_pred EEEecCch--------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecC
Confidence 54433222 01112222211111 2233211012578999998 7777775 468999999999884211
Q ss_pred ------------------------cchhHHHHHh--hcccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 011724 393 ------------------------TDQFTNRKLV--KSSITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENAL 442 (478)
Q Consensus 393 ------------------------~DQ~~na~rv--~~~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~ 442 (478)
.|....-..+ ++.+|+++|++++ ++|. |++.+++.++=-+++++..
T Consensus 518 ~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~---d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 518 PFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILK---TSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred HHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhc---CHHHHHHHHHHHHHHHHHh
Confidence 1111111122 1157899999997 8887 5555544444334444433
No 100
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.07 E-value=5.6e-05 Score=63.21 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=82.7
Q ss_pred eEEEEecccccCC---HHHHHHHHHHHhhCCC-eEEEEECCCCCCCCccCCCChhhhhhhccCCC--eEEeeccCh-Hhh
Q 011724 286 VLYVSFGSYAHAS---KNDIVEIALGLLLSEV-SFVWVLRPDIVSSDETDFLPVGFEEKIKISGR--GLIVPWCSQ-IDV 358 (478)
Q Consensus 286 ~Vyvs~Gs~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~n--v~v~~~ipq-~~v 358 (478)
.+||+-||..... --.-..+...|.+.|. ++++.++.+- -..++..... +.-+. +...+|-|- .+.
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~------~~~~d~~~~~-~k~~gl~id~y~f~psl~e~ 77 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ------PFFGDPIDLI-RKNGGLTIDGYDFSPSLTED 77 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc------cCCCCHHHhh-cccCCeEEEEEecCccHHHH
Confidence 6999999987311 1112346677777877 5667777551 1111211110 01222 334588885 667
Q ss_pred hhccCcceeeeccCchhhHHHHhcCcceeccCc----ccchhHHHHHhhc-----ccCHHHHHHHHHHH
Q 011724 359 ISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPL----LTDQFTNRKLVKS-----SITKEEVSEKINRL 418 (478)
Q Consensus 359 L~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~----~~DQ~~na~rv~~-----~~t~~~l~~~v~~l 418 (478)
.+.+++ +|+|+|.||++|.|..|+|.|+++- -..|-+-|..+++ ..++.+|.+.+.++
T Consensus 78 I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~L~~~L~~~ 144 (170)
T KOG3349|consen 78 IRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPSTLPAGLAKL 144 (170)
T ss_pred HhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccchHHHHHhh
Confidence 778999 9999999999999999999999995 3468999998887 55566666666554
No 101
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.06 E-value=0.0015 Score=64.06 Aligned_cols=103 Identities=12% Similarity=0.194 Sum_probs=75.4
Q ss_pred CCeEEe---eccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHHHHhhc------ccCHHHHHHHH
Q 011724 345 GRGLIV---PWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS------SITKEEVSEKI 415 (478)
Q Consensus 345 ~nv~v~---~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------~~t~~~l~~~v 415 (478)
.++.+. +|.+...++.++-+ ++|-.|. ---||...|+|++++=...++|+ +++. ..+++.|.+++
T Consensus 262 ~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v~agt~~lvg~~~~~i~~~~ 335 (383)
T COG0381 262 ERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GVEAGTNILVGTDEENILDAA 335 (383)
T ss_pred CcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ceecCceEEeCccHHHHHHHH
Confidence 457775 66788899999988 9998764 46799999999999999999998 4444 77899999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011724 416 NRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQF 461 (478)
Q Consensus 416 ~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~ 461 (478)
.++++ ++++.+|.+....-.-+ |.+ ...+.++|.....
T Consensus 336 ~~ll~---~~~~~~~m~~~~npYgd----g~a-s~rIv~~l~~~~~ 373 (383)
T COG0381 336 TELLE---DEEFYERMSNAKNPYGD----GNA-SERIVEILLNYFD 373 (383)
T ss_pred HHHhh---ChHHHHHHhcccCCCcC----cch-HHHHHHHHHHHhh
Confidence 99999 77777765554444432 333 3444444444433
No 102
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.05 E-value=0.0042 Score=63.62 Aligned_cols=73 Identities=18% Similarity=0.084 Sum_probs=51.7
Q ss_pred cCCCeEEeeccChH---hhhhccCcceeeec---cCc-hhhHHHHhcCcceeccCcccc---h------hHHHHHhhccc
Q 011724 343 ISGRGLIVPWCSQI---DVISHSAIGGFLTH---CGW-NSIQESIWCSVPLLCFPLLTD---Q------FTNRKLVKSSI 406 (478)
Q Consensus 343 ~~~nv~v~~~ipq~---~vL~~~~v~~~ItH---GG~-~s~~Eal~~GvP~l~~P~~~D---Q------~~na~rv~~~~ 406 (478)
+.++|.+.+++|+. .+|+.+++ +|+- =|+ -++.||+++|+|+|+.-..+. - ..++.. .-
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l---~~ 377 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFL---AS 377 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEE---eC
Confidence 56789999999864 57888888 6642 122 488999999999998654321 1 112211 23
Q ss_pred CHHHHHHHHHHHhC
Q 011724 407 TKEEVSEKINRLMS 420 (478)
Q Consensus 407 t~~~l~~~v~~ll~ 420 (478)
+.+++++++.++++
T Consensus 378 d~~~la~ai~~ll~ 391 (419)
T cd03806 378 TAEEYAEAIEKILS 391 (419)
T ss_pred CHHHHHHHHHHHHh
Confidence 89999999999998
No 103
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.04 E-value=0.012 Score=59.28 Aligned_cols=73 Identities=12% Similarity=0.041 Sum_probs=50.7
Q ss_pred CCCeEEeeccChHh---hhhccCcceee------eccCc-hhhHHHHhcCcceeccCcccchhHHHHHhhc----ccCHH
Q 011724 344 SGRGLIVPWCSQID---VISHSAIGGFL------THCGW-NSIQESIWCSVPLLCFPLLTDQFTNRKLVKS----SITKE 409 (478)
Q Consensus 344 ~~nv~v~~~ipq~~---vL~~~~v~~~I------tHGG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~----~~t~~ 409 (478)
.+||.+.+++|+.+ .++++++.++- +.++. +.+.|++++|+|+|+.++. ........ .-+.+
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~----~~~~~~~~~~~~~~d~~ 328 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP----EVRRYEDEVVLIADDPE 328 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH----HHHhhcCcEEEeCCCHH
Confidence 47999999998544 67788884332 23333 4589999999999988742 11111111 34799
Q ss_pred HHHHHHHHHhC
Q 011724 410 EVSEKINRLMS 420 (478)
Q Consensus 410 ~l~~~v~~ll~ 420 (478)
++.++|.+++.
T Consensus 329 ~~~~ai~~~l~ 339 (373)
T cd04950 329 EFVAAIEKALL 339 (373)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 104
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.02 E-value=0.002 Score=64.14 Aligned_cols=188 Identities=18% Similarity=0.155 Sum_probs=108.8
Q ss_pred HHHhcC-CccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhh-----CCC
Q 011724 241 ALHQKQ-PTYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLL-----SEV 314 (478)
Q Consensus 241 ~~~~~~-p~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~-----~~~ 314 (478)
+++... ++.|||=.+.+.... ..++....+.+ -.+++++|-+-.||-.+--...+..++++.+. .+.
T Consensus 147 ~y~~~g~~~~~VGHPl~d~~~~------~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l 219 (373)
T PF02684_consen 147 FYKKHGVPVTYVGHPLLDEVKP------EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDL 219 (373)
T ss_pred HHhccCCCeEEECCcchhhhcc------CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 445544 488999777654321 11133333443 23456789999998865333334445555433 244
Q ss_pred eEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEe-eccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCc-c
Q 011724 315 SFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIV-PWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPL-L 392 (478)
Q Consensus 315 ~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~-~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~-~ 392 (478)
++++.+... ..+..-...... ...++.+. ..-.-.+++..+++ .+.-.|- .+.|+...|+|||++=- .
T Consensus 220 ~fvvp~a~~-----~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~ 289 (373)
T PF02684_consen 220 QFVVPVAPE-----VHEELIEEILAE--YPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVS 289 (373)
T ss_pred EEEEecCCH-----HHHHHHHHHHHh--hCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCc
Confidence 555554322 000000011111 22333333 22245668888888 6655553 57899999999987533 2
Q ss_pred cchhHHHHHhhc----------------------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCCh
Q 011724 393 TDQFTNRKLVKS----------------------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSS 448 (478)
Q Consensus 393 ~DQ~~na~rv~~----------------------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~ 448 (478)
.=....|+++.+ .+|++.|.+++.++|+ |++.++..+...+.+++..+.|.++
T Consensus 290 ~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (373)
T PF02684_consen 290 PLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLE---NPEKRKKQKELFREIRQLLGPGASS 364 (373)
T ss_pred HHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhhhhccCC
Confidence 223445556555 8999999999999999 7766777777777777665556554
No 105
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.98 E-value=0.0047 Score=64.19 Aligned_cols=127 Identities=10% Similarity=0.099 Sum_probs=67.8
Q ss_pred eEEEEecccccC-CHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEE-eeccCh--Hhhhhc
Q 011724 286 VLYVSFGSYAHA-SKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLI-VPWCSQ--IDVISH 361 (478)
Q Consensus 286 ~Vyvs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v-~~~ipq--~~vL~~ 361 (478)
.+++..|..... ..+.+...+.-+.+.+.+++++-.+.... .+.+ ..+..+ .+.++.+ .+|-.. ..+++.
T Consensus 283 ~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~---~~~l-~~l~~~--~~~~v~~~~g~~~~~~~~~~~~ 356 (466)
T PRK00654 283 PLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPEL---EEAF-RALAAR--YPGKVGVQIGYDEALAHRIYAG 356 (466)
T ss_pred cEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHH---HHHH-HHHHHH--CCCcEEEEEeCCHHHHHHHHhh
Confidence 466667776532 22333333333333467776663322000 0000 112222 4566654 366332 257888
Q ss_pred cCcceeee---ccCch-hhHHHHhcCcceeccCcc--cchhHHH--------HHhhcccCHHHHHHHHHHHhC
Q 011724 362 SAIGGFLT---HCGWN-SIQESIWCSVPLLCFPLL--TDQFTNR--------KLVKSSITKEEVSEKINRLMS 420 (478)
Q Consensus 362 ~~v~~~It---HGG~~-s~~Eal~~GvP~l~~P~~--~DQ~~na--------~rv~~~~t~~~l~~~v~~ll~ 420 (478)
+|+ ||. +-|+| +.+||+++|+|.|+.-.. .|.-.+. ..+...-+++++++++.+++.
T Consensus 357 aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 357 ADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred CCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 998 764 34554 888999999999987542 2221111 111114578999999999875
No 106
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.89 E-value=0.0021 Score=63.96 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=76.3
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccCh---HhhhhccC
Q 011724 287 LYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQ---IDVISHSA 363 (478)
Q Consensus 287 Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq---~~vL~~~~ 363 (478)
.++..|..... .-...+++++++.+.+++++-.+. ..+.+... ..+||.+.+++|+ ..+++.++
T Consensus 197 ~il~~G~~~~~--K~~~~li~a~~~~~~~l~ivG~g~---------~~~~l~~~--~~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 197 YYLSVGRLVPY--KRIDLAIEAFNKLGKRLVVIGDGP---------ELDRLRAK--AGPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred EEEEEEcCccc--cChHHHHHHHHHCCCcEEEEECCh---------hHHHHHhh--cCCCEEEecCCCHHHHHHHHHhCC
Confidence 45556776532 235667777777777766554332 11223333 6789999999997 45788899
Q ss_pred cceeeeccCc-hhhHHHHhcCcceeccCccc--chhH--HHHHhhcccCHHHHHHHHHHHhC
Q 011724 364 IGGFLTHCGW-NSIQESIWCSVPLLCFPLLT--DQFT--NRKLVKSSITKEEVSEKINRLMS 420 (478)
Q Consensus 364 v~~~ItHGG~-~s~~Eal~~GvP~l~~P~~~--DQ~~--na~rv~~~~t~~~l~~~v~~ll~ 420 (478)
+-++-+.-|. .++.||+++|+|+|+....+ |.-. ++..+...-+.++++++|.++++
T Consensus 264 ~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~ 325 (351)
T cd03804 264 AFLFPAEEDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEK 325 (351)
T ss_pred EEEECCcCCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 8333234444 46789999999999986533 1111 11111114578889999999998
No 107
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.67 E-value=0.021 Score=60.64 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=50.5
Q ss_pred CeEEeeccChH-hhhhccCcceeee---ccC-chhhHHHHhcCcceeccCcccch----hHHHHHhhcccCHHHHHHHHH
Q 011724 346 RGLIVPWCSQI-DVISHSAIGGFLT---HCG-WNSIQESIWCSVPLLCFPLLTDQ----FTNRKLVKSSITKEEVSEKIN 416 (478)
Q Consensus 346 nv~v~~~ipq~-~vL~~~~v~~~It---HGG-~~s~~Eal~~GvP~l~~P~~~DQ----~~na~rv~~~~t~~~l~~~v~ 416 (478)
++.+.++.++. .+++.+++ ||. +=| .+++.||+++|+|+|+.-..+.. ..|+.- .-+.+++.+++.
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~V~~g~nGll---~~D~EafAeAI~ 676 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLT---YKTSEDFVAKVK 676 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCceEeecCCeEe---cCCHHHHHHHHH
Confidence 46666777754 58999998 775 233 46899999999999998765432 112111 246899999999
Q ss_pred HHhC
Q 011724 417 RLMS 420 (478)
Q Consensus 417 ~ll~ 420 (478)
++|.
T Consensus 677 ~LLs 680 (794)
T PLN02501 677 EALA 680 (794)
T ss_pred HHHh
Confidence 9998
No 108
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.64 E-value=0.11 Score=54.09 Aligned_cols=127 Identities=9% Similarity=0.039 Sum_probs=70.3
Q ss_pred eEEEEecccccC-CHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChH---hhhhc
Q 011724 286 VLYVSFGSYAHA-SKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQI---DVISH 361 (478)
Q Consensus 286 ~Vyvs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~---~vL~~ 361 (478)
.+++..|..... ..+.+.+.+..+.+.+.+++++-.+. +...+.+ ..+..+ .+.++.+....+.. .+++.
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~---~~~~~~l-~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ 365 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGD---PELEEAL-RELAER--YPGNVRVIIGYDEALAHLIYAG 365 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCC---HHHHHHH-HHHHHH--CCCcEEEEEcCCHHHHHHHHHh
Confidence 466667777632 23334444444444456666553321 0000000 112222 45677776555543 47888
Q ss_pred cCcceeee---ccCch-hhHHHHhcCcceeccCccc--chhHH--------HHHhhcccCHHHHHHHHHHHhC
Q 011724 362 SAIGGFLT---HCGWN-SIQESIWCSVPLLCFPLLT--DQFTN--------RKLVKSSITKEEVSEKINRLMS 420 (478)
Q Consensus 362 ~~v~~~It---HGG~~-s~~Eal~~GvP~l~~P~~~--DQ~~n--------a~rv~~~~t~~~l~~~v~~ll~ 420 (478)
+++ +|. +-|+| +.+||+++|+|+|+....+ |.-.+ ...+...-++++++++|.+++.
T Consensus 366 aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 366 ADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred CCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 888 764 23444 7889999999999876532 22211 1111124688999999999885
No 109
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.64 E-value=0.0096 Score=62.23 Aligned_cols=94 Identities=12% Similarity=0.156 Sum_probs=60.8
Q ss_pred cCCCeEEeeccChHhhhhccCcceeee---ccCc-hhhHHHHhcCcceeccCcc-c--c---hhHHHHHhhc---ccC--
Q 011724 343 ISGRGLIVPWCSQIDVISHSAIGGFLT---HCGW-NSIQESIWCSVPLLCFPLL-T--D---QFTNRKLVKS---SIT-- 407 (478)
Q Consensus 343 ~~~nv~v~~~ipq~~vL~~~~v~~~It---HGG~-~s~~Eal~~GvP~l~~P~~-~--D---Q~~na~rv~~---~~t-- 407 (478)
+.++|.+.++.+...+++.+++ ||. .=|+ .++.||+++|+|+|+.-.. + | ...|+..+.. .-+
T Consensus 374 l~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~ 451 (500)
T TIGR02918 374 AQDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDED 451 (500)
T ss_pred CCCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCccccchh
Confidence 4567888899988899999999 765 3444 6899999999999996542 1 1 1122222210 012
Q ss_pred --HHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 011724 408 --KEEVSEKINRLMSGKSSDELRKNIKEVRKKL 438 (478)
Q Consensus 408 --~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~ 438 (478)
.++++++|.+++..+.-.++.+++++.++.+
T Consensus 452 ~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 452 QIITALAEKIVEYFNSNDIDAFHEYSYQIAEGF 484 (500)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhc
Confidence 7889999999996111234455555555444
No 110
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.00046 Score=56.75 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=67.3
Q ss_pred EEEEecccccCCHHHHHH--HHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCC-eEEeec--cC-hHhhhh
Q 011724 287 LYVSFGSYAHASKNDIVE--IALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGR-GLIVPW--CS-QIDVIS 360 (478)
Q Consensus 287 Vyvs~Gs~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~n-v~v~~~--ip-q~~vL~ 360 (478)
+||+.||....-...+.. +..-.+....++|+.+|.+ .+ .|-| ..+.+| .+ .+.+..
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~---------d~--------kpvagl~v~~F~~~~kiQsli~ 64 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG---------DI--------KPVAGLRVYGFDKEEKIQSLIH 64 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC---------Cc--------ccccccEEEeechHHHHHHHhh
Confidence 789999985321222222 3333333455788888866 11 2212 344444 44 577888
Q ss_pred ccCcceeeeccCchhhHHHHhcCcceeccCccc--------chhHHHHHhhc
Q 011724 361 HSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLT--------DQFTNRKLVKS 404 (478)
Q Consensus 361 ~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~--------DQ~~na~rv~~ 404 (478)
.+++ +|+|+|-||+..++.-++|.+++|--. .|-.-|..+.+
T Consensus 65 darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae 114 (161)
T COG5017 65 DARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE 114 (161)
T ss_pred cceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh
Confidence 8887 999999999999999999999999744 47778888777
No 111
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.60 E-value=0.0012 Score=58.30 Aligned_cols=82 Identities=18% Similarity=0.321 Sum_probs=59.2
Q ss_pred cCCCeEEeeccC---hHhhhhccCcceeeec----cCchhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccC
Q 011724 343 ISGRGLIVPWCS---QIDVISHSAIGGFLTH----CGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SIT 407 (478)
Q Consensus 343 ~~~nv~v~~~ip---q~~vL~~~~v~~~ItH----GG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t 407 (478)
...++.+.++++ ...++..+++ +|+. |+..++.||+++|+|+|+.- -..+...+.. .-+
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~~~g~~~~~~~ 144 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDGVNGFLFDPND 144 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTTTSEEEESTTS
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeecc----ccCCceeeccccceEEeCCCC
Confidence 567899999998 2668889898 8876 66779999999999999755 3333333333 558
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHH
Q 011724 408 KEEVSEKINRLMSGKSSDELRKNIKE 433 (478)
Q Consensus 408 ~~~l~~~v~~ll~~~~~~~~r~~a~~ 433 (478)
.++++++|.+++. +++.+++..+
T Consensus 145 ~~~l~~~i~~~l~---~~~~~~~l~~ 167 (172)
T PF00534_consen 145 IEELADAIEKLLN---DPELRQKLGK 167 (172)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CHHHHHHHHH
Confidence 8999999999998 7755554433
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.59 E-value=0.017 Score=60.24 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=58.4
Q ss_pred cCCCeEEeeccChHhhhhccCcceeeec----cCchhhHHHHhcCcceeccCccc--chhHH--------HHHhhcccCH
Q 011724 343 ISGRGLIVPWCSQIDVISHSAIGGFLTH----CGWNSIQESIWCSVPLLCFPLLT--DQFTN--------RKLVKSSITK 408 (478)
Q Consensus 343 ~~~nv~v~~~ipq~~vL~~~~v~~~ItH----GG~~s~~Eal~~GvP~l~~P~~~--DQ~~n--------a~rv~~~~t~ 408 (478)
+.++|.+.+......+++.+++ +|.- |--+++.||+++|+|+|+..... |--.+ +..+....+.
T Consensus 352 l~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~ 429 (475)
T cd03813 352 LEDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPADP 429 (475)
T ss_pred CCCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCCH
Confidence 5678998886667888998998 6543 33468999999999999965532 11111 2222225678
Q ss_pred HHHHHHHHHHhCCCChHHHHHH
Q 011724 409 EEVSEKINRLMSGKSSDELRKN 430 (478)
Q Consensus 409 ~~l~~~v~~ll~~~~~~~~r~~ 430 (478)
+++++++.++++ |++.+++
T Consensus 430 ~~la~ai~~ll~---~~~~~~~ 448 (475)
T cd03813 430 EALARAILRLLK---DPELRRA 448 (475)
T ss_pred HHHHHHHHHHhc---CHHHHHH
Confidence 999999999998 6655444
No 113
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.58 E-value=0.085 Score=54.91 Aligned_cols=124 Identities=11% Similarity=0.069 Sum_probs=68.7
Q ss_pred eEEEEecccccC-CHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhh---hhhhccCCCeEEe-eccCh--Hhh
Q 011724 286 VLYVSFGSYAHA-SKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGF---EEKIKISGRGLIV-PWCSQ--IDV 358 (478)
Q Consensus 286 ~Vyvs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~---~~~~~~~~nv~v~-~~ipq--~~v 358 (478)
.+++..|..... ..+.+...+..+.+.+.+++++-.+. ..+.+.+ ..+ .++++.+. ++... ..+
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~-------~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~ 367 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD-------PEYEEALRELAAR--YPGRVAVLIGYDEALAHLI 367 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC-------HHHHHHHHHHHHh--CCCcEEEEEeCCHHHHHHH
Confidence 466667777632 23344444444444556665554332 0011111 222 35777765 44422 247
Q ss_pred hhccCcceeeec---cCc-hhhHHHHhcCcceeccCccc--chhHH--------HHHhhcccCHHHHHHHHHHHhC
Q 011724 359 ISHSAIGGFLTH---CGW-NSIQESIWCSVPLLCFPLLT--DQFTN--------RKLVKSSITKEEVSEKINRLMS 420 (478)
Q Consensus 359 L~~~~v~~~ItH---GG~-~s~~Eal~~GvP~l~~P~~~--DQ~~n--------a~rv~~~~t~~~l~~~v~~ll~ 420 (478)
++.+++ ++.- -|+ .+.+||+++|+|+|+....+ |.-.+ ...+...-+.+++.+++.+++.
T Consensus 368 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 368 YAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALA 441 (476)
T ss_pred HHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 788888 6632 233 47789999999999766532 21111 1111224578999999999885
No 114
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.54 E-value=0.034 Score=54.65 Aligned_cols=190 Identities=12% Similarity=0.108 Sum_probs=104.3
Q ss_pred CccccccCCCCCCCCCCCCCCCCChhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhh-----CCCeEEEEEC
Q 011724 247 PTYAIGPIFPAGFTKSLVPTSLWSESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLL-----SEVSFVWVLR 321 (478)
Q Consensus 247 p~~~vGp~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~ 321 (478)
|.+|||=...+.... ..+.+.+.+-+.-..+++++.+-.||-.+--...+..+.++... .+.++++-+.
T Consensus 157 ~~~yVGHpl~d~i~~------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~ 230 (381)
T COG0763 157 PCTYVGHPLADEIPL------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLV 230 (381)
T ss_pred CeEEeCChhhhhccc------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence 488888766544311 11245566666555667789999999875333333334444333 3456666654
Q ss_pred CCCCCCCccCCCChhhhhhhccCCCe-EEeecc-C-h-HhhhhccCcceeeeccCchhhHHHHhcCcceeccCcc-cchh
Q 011724 322 PDIVSSDETDFLPVGFEEKIKISGRG-LIVPWC-S-Q-IDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLL-TDQF 396 (478)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~~~~~~~nv-~v~~~i-p-q-~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~-~DQ~ 396 (478)
.. ..+.+-..+ ...+. ...-++ + + ..++..+|+ .+.-+|- -+.|+..+|+|||+.=-. .=-.
T Consensus 231 ~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~ 297 (381)
T COG0763 231 NA-----KYRRIIEEA-----LKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITY 297 (381)
T ss_pred cH-----HHHHHHHHH-----hhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHH
Confidence 33 111111111 11111 112222 2 1 336777777 6666664 368999999999874211 1112
Q ss_pred HHHHHhhc----------------------ccCHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 011724 397 TNRKLVKS----------------------SITKEEVSEKINRLMSGK-SSDELRKNIKEVRKKLENALSADGSSQKNFN 453 (478)
Q Consensus 397 ~na~rv~~----------------------~~t~~~l~~~v~~ll~~~-~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~ 453 (478)
..|.+... .++++.|.+++..++.++ +...+++...+|.+.++. +++++.+++
T Consensus 298 ~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~ 373 (381)
T COG0763 298 FIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQ 373 (381)
T ss_pred HHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHH
Confidence 23334433 799999999999999932 113455555556665543 446666666
Q ss_pred HHHHHH
Q 011724 454 QFINDV 459 (478)
Q Consensus 454 ~~i~~~ 459 (478)
.+++.+
T Consensus 374 ~vl~~~ 379 (381)
T COG0763 374 AVLELL 379 (381)
T ss_pred HHHHHh
Confidence 555544
No 115
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.44 E-value=0.0028 Score=64.56 Aligned_cols=141 Identities=21% Similarity=0.261 Sum_probs=74.2
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhh-hccCCCeEEeeccChHh---
Q 011724 282 PRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEK-IKISGRGLIVPWCSQID--- 357 (478)
Q Consensus 282 ~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~-~~~~~nv~v~~~ipq~~--- 357 (478)
++..++|.||.......++.++.-.+-|++.+.-.+|........ .+.+-..+... + .++++.+.++.|+.+
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~---~~~l~~~~~~~Gv-~~~Ri~f~~~~~~~ehl~ 357 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG---EARLRRRFAAHGV-DPDRIIFSPVAPREEHLR 357 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH---HHHHHHHHHHTTS--GGGEEEEE---HHHHHH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH---HHHHHHHHHHcCC-ChhhEEEcCCCCHHHHHH
Confidence 345699999999999999999999999999999888887543100 00011111110 1 245788888877544
Q ss_pred hhhccCcceee---eccCchhhHHHHhcCcceeccCcccc-hhHHHHHhhc-------ccCHHHHHHHHHHHhCCCChHH
Q 011724 358 VISHSAIGGFL---THCGWNSIQESIWCSVPLLCFPLLTD-QFTNRKLVKS-------SITKEEVSEKINRLMSGKSSDE 426 (478)
Q Consensus 358 vL~~~~v~~~I---tHGG~~s~~Eal~~GvP~l~~P~~~D-Q~~na~rv~~-------~~t~~~l~~~v~~ll~~~~~~~ 426 (478)
.+..+|+ ++ ..+|.+|++|||+.|||+|.+|--.= ...-|..+.. ..+.++-.+.-.++-. |++
T Consensus 358 ~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~---D~~ 432 (468)
T PF13844_consen 358 RYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLAT---DPE 432 (468)
T ss_dssp HGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH----HH
T ss_pred HhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhC---CHH
Confidence 3445666 54 56899999999999999999995321 1111111211 4455555555556665 666
Q ss_pred HHHHH
Q 011724 427 LRKNI 431 (478)
Q Consensus 427 ~r~~a 431 (478)
++++.
T Consensus 433 ~l~~l 437 (468)
T PF13844_consen 433 RLRAL 437 (468)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 116
>PLN02316 synthase/transferase
Probab=97.38 E-value=0.068 Score=59.82 Aligned_cols=111 Identities=8% Similarity=-0.023 Sum_probs=67.7
Q ss_pred CCCeEEeeccChH---hhhhccCcceeeec---cCc-hhhHHHHhcCcceeccCccc--chhHH-------HH-------
Q 011724 344 SGRGLIVPWCSQI---DVISHSAIGGFLTH---CGW-NSIQESIWCSVPLLCFPLLT--DQFTN-------RK------- 400 (478)
Q Consensus 344 ~~nv~v~~~ipq~---~vL~~~~v~~~ItH---GG~-~s~~Eal~~GvP~l~~P~~~--DQ~~n-------a~------- 400 (478)
++++.+....+.. .+++.+|+ |+.- =|+ .+.+||+++|+|.|+....+ |.-.. +.
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 5677776555543 58888888 8842 233 48999999999988765422 22111 10
Q ss_pred -HhhcccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011724 401 -LVKSSITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQF 461 (478)
Q Consensus 401 -rv~~~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~ 461 (478)
.+....+++.|..+|.+++. . |.+....+++..++++...-|-...+.+.++-+..
T Consensus 977 Gflf~~~d~~aLa~AL~raL~---~--~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 977 GFSFDGADAAGVDYALNRAIS---A--WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred eEEeCCCCHHHHHHHHHHHHh---h--hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 01115578999999999996 2 23344445555555544455655556665555543
No 117
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.27 E-value=0.016 Score=58.53 Aligned_cols=108 Identities=12% Similarity=0.148 Sum_probs=66.4
Q ss_pred cCCCeEEeeccChH---hhhhccCcceeeec----cCc-hhhHHHHhcCcceeccCccc--c---hhHHHHHhhcccCHH
Q 011724 343 ISGRGLIVPWCSQI---DVISHSAIGGFLTH----CGW-NSIQESIWCSVPLLCFPLLT--D---QFTNRKLVKSSITKE 409 (478)
Q Consensus 343 ~~~nv~v~~~ipq~---~vL~~~~v~~~ItH----GG~-~s~~Eal~~GvP~l~~P~~~--D---Q~~na~rv~~~~t~~ 409 (478)
...++.+.+++|+. .+++.+++ +|.- .|. .++.||+++|+|+|+....+ | ...|+..+....+.+
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~ 332 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSD 332 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHH
Confidence 45688888999854 46888998 6642 343 57789999999999977532 1 111221122245889
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011724 410 EVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDV 459 (478)
Q Consensus 410 ~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~ 459 (478)
+++++|.++++ +++.+ ++++..++...+.-+-...++++.+.+
T Consensus 333 ~la~~I~~ll~---d~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l 375 (380)
T PRK15484 333 SIISDINRTLA---DPELT----QIAEQAKDFVFSKYSWEGVTQRFEEQI 375 (380)
T ss_pred HHHHHHHHHHc---CHHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998 66543 233333322222334444444544444
No 118
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.23 E-value=0.061 Score=53.81 Aligned_cols=75 Identities=11% Similarity=0.181 Sum_probs=53.5
Q ss_pred cCCCeEEeeccCh-HhhhhccCcceeeecc--CchhhHHHHhcCcceeccCcccchhHHHHHhhc--------ccCHHHH
Q 011724 343 ISGRGLIVPWCSQ-IDVISHSAIGGFLTHC--GWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS--------SITKEEV 411 (478)
Q Consensus 343 ~~~nv~v~~~ipq-~~vL~~~~v~~~ItHG--G~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~--------~~t~~~l 411 (478)
+++++.+.++.++ ..++..+++-++.++. ...++.||+++|+|+|+.....- ....+.. .-+.+++
T Consensus 259 ~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~l 335 (372)
T cd04949 259 LEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEAL 335 (372)
T ss_pred CcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHH
Confidence 5678888887765 5688999995555553 34689999999999998654211 1122222 4489999
Q ss_pred HHHHHHHhC
Q 011724 412 SEKINRLMS 420 (478)
Q Consensus 412 ~~~v~~ll~ 420 (478)
+++|.+++.
T Consensus 336 a~~i~~ll~ 344 (372)
T cd04949 336 AEAIIELLN 344 (372)
T ss_pred HHHHHHHHc
Confidence 999999998
No 119
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.16 E-value=0.0079 Score=61.33 Aligned_cols=102 Identities=15% Similarity=0.219 Sum_probs=64.3
Q ss_pred CCCeEEeeccChHh---hhhccCcceeeeccC----chhhHHHHhcCcceeccCcccchhHHHHHhhc---------ccC
Q 011724 344 SGRGLIVPWCSQID---VISHSAIGGFLTHCG----WNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS---------SIT 407 (478)
Q Consensus 344 ~~nv~v~~~ipq~~---vL~~~~v~~~ItHGG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~---------~~t 407 (478)
..+|.+.+|+++.+ ++..+++.+||...- .++++||+++|+|+|+....+ ....+.+ .-+
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~~~~~ 363 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLSKDPT 363 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeCCCCC
Confidence 45688889999764 444444444775443 468999999999999765432 2223322 347
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 011724 408 KEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQF 455 (478)
Q Consensus 408 ~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~ 455 (478)
.++++++|.++++ |++.++ +|++..++.+++.-+.+....+|
T Consensus 364 ~~~la~~I~~ll~---~~~~~~---~m~~~ar~~~~~~f~~~~~~~~~ 405 (407)
T cd04946 364 PNELVSSLSKFID---NEEEYQ---TMREKAREKWEENFNASKNYREF 405 (407)
T ss_pred HHHHHHHHHHHHh---CHHHHH---HHHHHHHHHHHHHcCHHHhHHHh
Confidence 8999999999998 655443 34444444444445544444444
No 120
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.04 E-value=0.19 Score=50.15 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=74.1
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeE-EEEcCC
Q 011724 6 KKPKPHAIAICYPLQGHVIPFVNLALKLASS--GFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIR-YATVSD 82 (478)
Q Consensus 6 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~ 82 (478)
.+.++|||++-....|++.-..++.+.|+++ +.+|++++.+.+.+.++ .. + .|. ++.++.
T Consensus 2 ~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~---~~--------P------~id~vi~~~~ 64 (352)
T PRK10422 2 DKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILS---EN--------P------EINALYGIKN 64 (352)
T ss_pred CCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhc---cC--------C------CceEEEEecc
Confidence 3557999999999999999999999999996 99999999999998887 44 1 343 222321
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEE
Q 011724 83 GLPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISF 149 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~ 149 (478)
. . ......+.. +..++..++. .++|++|.-........++...|.|...-
T Consensus 65 ~------~-~~~~~~~~~--------~~~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 65 K------K-AGASEKIKN--------FFSLIKVLRA--NKYDLIVNLTDQWMVALLVRLLNARVKIS 114 (352)
T ss_pred c------c-ccHHHHHHH--------HHHHHHHHhh--CCCCEEEEcccchHHHHHHHHhCCCeEEe
Confidence 1 0 000011111 2234455554 57999997655555667777778777553
No 121
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.51 Score=45.65 Aligned_cols=348 Identities=15% Similarity=0.143 Sum_probs=172.8
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCC
Q 011724 6 KKPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLP 85 (478)
Q Consensus 6 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 85 (478)
..++.|++++-.+..||-=.|.-=|..|++.|.+|.+++-.+.....+ - -..++|+++.++.-.
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~---l------------~~hprI~ih~m~~l~- 72 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEE---L------------LNHPRIRIHGMPNLP- 72 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHH---H------------hcCCceEEEeCCCCc-
Confidence 345688999999999999999999999999999999998765543332 1 113489999887421
Q ss_pred CCCCCC-CCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcC-CchhhHHHHHHc----CCccEEEecchhHHHHH
Q 011724 86 LNFDRS-LNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDT-FFVWSSMIAKKY----NLVNISFWTEPALVLTL 159 (478)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~-~~~~~~~~A~~l----giP~v~~~~~~~~~~~~ 159 (478)
..... .-+.-.++.+... ...+-.|.. + .++|++++-. -+.....+|..+ |..+++=+....+.+..
T Consensus 73 -~~~~~p~~~~l~lKvf~Qf-l~Ll~aL~~-~----~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l 145 (444)
T KOG2941|consen 73 -FLQGGPRVLFLPLKVFWQF-LSLLWALFV-L----RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQL 145 (444)
T ss_pred -ccCCCchhhhhHHHHHHHH-HHHHHHHHh-c----cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHH
Confidence 11110 1111122222211 112223333 2 5689888765 334455555444 67888777666654222
Q ss_pred HHhhhhhhhcCCCCCCCCCCCccccCCCCCCCCccccchhhhhcCC-chHHHHHHHHHhh--hhccccEEEecChhhhcH
Q 011724 160 YYHMDLLRSHGHFASTDNREDTIDYIPGVRAIERKDLMSYLQATDT-STVVHRIIQKAFE--DVKRVDFILCNTVHELES 236 (478)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~l~~~~~~le~ 236 (478)
.+.... +.|-. ...+.+..++.+... .-.+.+.+..... +--....++....++ .+
T Consensus 146 ~~~~g~------------------~h~lV--~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps-~~ 204 (444)
T KOG2941|consen 146 KLKLGF------------------QHPLV--RLVRWLEKYFGKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPS-KP 204 (444)
T ss_pred HhhcCC------------------CCchH--HHHHHHHHHhhcccccchhhHHHHHHHHHHhcCCceeEEEecCCCC-CC
Confidence 211000 01100 000111112222111 1112222221110 110122333333332 11
Q ss_pred HHHHHHHhcCCccccccC----CCCCCCCCCCCCCCCChhhHhHhhc--------CCCCCceEEEEecccccCCHHHHHH
Q 011724 237 ETISALHQKQPTYAIGPI----FPAGFTKSLVPTSLWSESECTQWLN--------TKPRGSVLYVSFGSYAHASKNDIVE 304 (478)
Q Consensus 237 ~~~~~~~~~~p~~~vGp~----~~~~~~~~~~~~~l~~~~~~~~~l~--------~~~~~~~Vyvs~Gs~~~~~~~~~~~ 304 (478)
..++..... +.-+|.. ....++. +.+ +-..|+. ..+++|.++||. ....+.+.+-.
T Consensus 205 ~~l~~~H~l--f~~l~~d~~~f~ar~~q~----~~~----~~taf~~k~~s~~v~~~~~~pallvsS--TswTpDEdf~I 272 (444)
T KOG2941|consen 205 TPLDEQHEL--FMKLAGDHSPFRAREPQD----KAL----ERTAFTKKDASGDVQLLPERPALLVSS--TSWTPDEDFGI 272 (444)
T ss_pred CchhHHHHH--Hhhhccccchhhhccccc----chh----hhhhHhhhcccchhhhccCCCeEEEec--CCCCCcccHHH
Confidence 111111110 1112221 1111111 111 1111111 124567788874 33445666777
Q ss_pred HHHHHhhC---------CC-eEEEEECCCCCCCCccCCCChhhhhhhc--cCCCeEEe-ecc---ChHhhhhccCcceee
Q 011724 305 IALGLLLS---------EV-SFVWVLRPDIVSSDETDFLPVGFEEKIK--ISGRGLIV-PWC---SQIDVISHSAIGGFL 368 (478)
Q Consensus 305 ~~~al~~~---------~~-~~i~~~~~~~~~~~~~~~l~~~~~~~~~--~~~nv~v~-~~i---pq~~vL~~~~v~~~I 368 (478)
+++|+..- +. .++..++++ .++-+.|...+. .=.+|.+. .|. ++..+|+.+|+|+.+
T Consensus 273 LL~AL~~y~~~~~~~~~~lP~llciITGK-------GPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcL 345 (444)
T KOG2941|consen 273 LLEALVIYEEQLYDKTHNLPSLLCIITGK-------GPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCL 345 (444)
T ss_pred HHHHHHhhhhhhhhccCCCCcEEEEEcCC-------CchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEe
Confidence 88887721 11 345554443 134455544321 12367666 786 578899999998888
Q ss_pred eccCch-----hhHHHHhcCcceeccCcccchhHHHHHhhc------ccCHHHHHHHHHHHhC
Q 011724 369 THCGWN-----SIQESIWCSVPLLCFPLLTDQFTNRKLVKS------SITKEEVSEKINRLMS 420 (478)
Q Consensus 369 tHGG~~-----s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------~~t~~~l~~~v~~ll~ 420 (478)
|-...| -|..-.-+|+|++.+-+- .--..|.+ .-++++|++.+.-++.
T Consensus 346 HtSSSGLDLPMKVVDMFGcglPvcA~~fk----cl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~ 404 (444)
T KOG2941|consen 346 HTSSSGLDLPMKVVDMFGCGLPVCAVNFK----CLDELVKHGENGLVFEDSEELAEQLQMLFK 404 (444)
T ss_pred eecCcccCcchhHHHhhcCCCceeeecch----hHHHHHhcCCCceEeccHHHHHHHHHHHHh
Confidence 877665 355666788888766542 11223333 6789999999999987
No 122
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.81 E-value=0.091 Score=51.57 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=78.3
Q ss_pred HhhcCCCCCceEEEEecccc---cCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeec
Q 011724 276 QWLNTKPRGSVLYVSFGSYA---HASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPW 352 (478)
Q Consensus 276 ~~l~~~~~~~~Vyvs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ 352 (478)
+++....+++.|.+..|+.. ..+.+.+.++++.+.+.+.++++..++. ++. ...+...+. .+. ..+.+-
T Consensus 171 ~~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~----~e~-~~~~~i~~~--~~~-~~l~g~ 242 (319)
T TIGR02193 171 AFLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND----AEK-QRAERIAEA--LPG-AVVLPK 242 (319)
T ss_pred hhhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH----HHH-HHHHHHHhh--CCC-CeecCC
Confidence 34433333556777777543 3567888889988877777777664433 000 001112221 222 233332
Q ss_pred --cCh-HhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccc--h--hH--HHHHhhc----ccCHHHHHHHHHHHh
Q 011724 353 --CSQ-IDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTD--Q--FT--NRKLVKS----SITKEEVSEKINRLM 419 (478)
Q Consensus 353 --ipq-~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~D--Q--~~--na~rv~~----~~t~~~l~~~v~~ll 419 (478)
++| .++++++++ ||+. -.|.++=|.+.|+|+|++=-..+ + |. +...+.. .++.+++.++++++|
T Consensus 243 ~sL~el~ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 243 MSLAEVAALLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred CCHHHHHHHHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 333 668999999 9986 77889999999999987521111 1 11 1111111 889999999998875
No 123
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.79 E-value=0.89 Score=47.69 Aligned_cols=47 Identities=23% Similarity=0.222 Sum_probs=37.4
Q ss_pred cCCCeEEeeccCh-HhhhhccCcceeee---ccC-chhhHHHHhcCcceeccCc
Q 011724 343 ISGRGLIVPWCSQ-IDVISHSAIGGFLT---HCG-WNSIQESIWCSVPLLCFPL 391 (478)
Q Consensus 343 ~~~nv~v~~~ipq-~~vL~~~~v~~~It---HGG-~~s~~Eal~~GvP~l~~P~ 391 (478)
+.++|.+.+|..+ ..+|+.+++ ||. +-| .+++.||+++|+|+|+...
T Consensus 453 L~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv 504 (578)
T PRK15490 453 ILERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA 504 (578)
T ss_pred CCCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC
Confidence 4578999988753 567899999 885 345 4699999999999998765
No 124
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.73 E-value=0.85 Score=46.64 Aligned_cols=175 Identities=6% Similarity=0.064 Sum_probs=92.5
Q ss_pred hHhhcCCCCCceEEEEecccccC------C----HHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCC---Chhhhhhh
Q 011724 275 TQWLNTKPRGSVLYVSFGSYAHA------S----KNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFL---PVGFEEKI 341 (478)
Q Consensus 275 ~~~l~~~~~~~~Vyvs~Gs~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l---~~~~~~~~ 341 (478)
..|+...+++++|-|+.-..... . ...+.++++.+.+.|+++++.-.... .....+.. ...+.+.+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~-~~~~~~dD~~~~~~l~~~~ 303 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTG-IDSYNKDDRMVALNLRQHV 303 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccC-ccCCCCchHHHHHHHHHhc
Confidence 34554333455787776543311 1 22344455656567888876643210 00000000 01222221
Q ss_pred ccCCCeEEe--eccCh--HhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHHHHh--hc------ccCHH
Q 011724 342 KISGRGLIV--PWCSQ--IDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLV--KS------SITKE 409 (478)
Q Consensus 342 ~~~~nv~v~--~~ipq--~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv--~~------~~t~~ 409 (478)
..+.++.+. ++-|. ..+++++++ +|..= +-++.-|+..|||.+.++...-=...+..+ .+ .++.+
T Consensus 304 ~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~ 380 (426)
T PRK10017 304 SDPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDG 380 (426)
T ss_pred ccccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHH
Confidence 123344443 33343 378889988 88653 346667899999999999832111111111 11 67889
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011724 410 EVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQF 461 (478)
Q Consensus 410 ~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~ 461 (478)
+|.+.+.+++.+ .+++++..++--++.++ .+.....++|+.+.+
T Consensus 381 ~Li~~v~~~~~~--r~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~ 424 (426)
T PRK10017 381 SLQAMVADTLGQ--LPALNARLAEAVSRERQ------TGMQMVQSVLERIGE 424 (426)
T ss_pred HHHHHHHHHHhC--HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 999999999983 24556555554444443 123456666665544
No 125
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.63 E-value=0.47 Score=46.63 Aligned_cols=126 Identities=16% Similarity=0.075 Sum_probs=75.1
Q ss_pred CceEEEEecc-cc--cCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeec--cCh-Hh
Q 011724 284 GSVLYVSFGS-YA--HASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPW--CSQ-ID 357 (478)
Q Consensus 284 ~~~Vyvs~Gs-~~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~--ipq-~~ 357 (478)
++.|.+..|+ .. ..+.+.+.++++.+.+.+.++++..+++ ++. ...+...+ ...++.+.+- +.+ ..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~----~e~-~~~~~i~~---~~~~~~l~g~~sL~elaa 249 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAE----HEE-QRAKRLAE---GFPYVEVLPKLSLEQVAR 249 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCH----HHH-HHHHHHHc---cCCcceecCCCCHHHHHH
Confidence 3455444454 33 3678888899988877777776554432 000 01111111 1123434433 233 66
Q ss_pred hhhccCcceeeeccCchhhHHHHhcCcceeccCcccch------hHHHHHhh--c----ccCHHHHHHHHHHHhC
Q 011724 358 VISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQ------FTNRKLVK--S----SITKEEVSEKINRLMS 420 (478)
Q Consensus 358 vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ------~~na~rv~--~----~~t~~~l~~~v~~ll~ 420 (478)
+++++++ ||+. ..|.++=|.+.|+|+|++=-..|. ..|...+. . .++.+++.++++++|+
T Consensus 250 li~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~~~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 250 VLAGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRSPGKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred HHHhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecCCCcccccCCHHHHHHHHHHHhh
Confidence 8999999 9987 668899999999999886322221 11222222 1 8899999999988874
No 126
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.55 E-value=0.0058 Score=51.49 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=47.1
Q ss_pred CCCeEEeeccCh-HhhhhccCcceeeec--cC-chhhHHHHhcCcceeccCcccchhHHH----HHhhcccCHHHHHHHH
Q 011724 344 SGRGLIVPWCSQ-IDVISHSAIGGFLTH--CG-WNSIQESIWCSVPLLCFPLLTDQFTNR----KLVKSSITKEEVSEKI 415 (478)
Q Consensus 344 ~~nv~v~~~ipq-~~vL~~~~v~~~ItH--GG-~~s~~Eal~~GvP~l~~P~~~DQ~~na----~rv~~~~t~~~l~~~v 415 (478)
.+|+.+.+|++. ..+++.+++.+..+. .| .+++.|++++|+|+|+.+....+.... ..+ .-+++++.+++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~i 129 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNGAEGIVEEDGCGVLV--ANDPEELAEAI 129 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHHCHCHS---SEEEE---TT-HHHHHHHH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcchhhheeecCCeEEE--CCCHHHHHHHH
Confidence 469999999974 668899999666542 23 489999999999999988721111111 111 45889999999
Q ss_pred HHHhC
Q 011724 416 NRLMS 420 (478)
Q Consensus 416 ~~ll~ 420 (478)
.++++
T Consensus 130 ~~l~~ 134 (135)
T PF13692_consen 130 ERLLN 134 (135)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99985
No 127
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.51 E-value=1.2 Score=45.48 Aligned_cols=110 Identities=5% Similarity=-0.104 Sum_probs=60.2
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCeE-EEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccC-h---Hhhhhc
Q 011724 287 LYVSFGSYAHASKNDIVEIALGLLLSEVSF-VWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCS-Q---IDVISH 361 (478)
Q Consensus 287 Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ip-q---~~vL~~ 361 (478)
+++..|.........+..+++|+.+.+.++ ++.+|.. . .. .+.++...++.. + ..+++.
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g--------~--~~------~~~~v~~~g~~~~~~~l~~~y~~ 306 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKF--------S--PF------TAGNVVNHGFETDKRKLMSALNQ 306 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCC--------C--cc------cccceEEecCcCCHHHHHHHHHh
Confidence 334445422222233566888888765443 3344432 0 00 234566566653 3 445666
Q ss_pred cCcceeeec----cCchhhHHHHhcCcceeccCcccchhHHH----HHhhcccCHHHHHHHH
Q 011724 362 SAIGGFLTH----CGWNSIQESIWCSVPLLCFPLLTDQFTNR----KLVKSSITKEEVSEKI 415 (478)
Q Consensus 362 ~~v~~~ItH----GG~~s~~Eal~~GvP~l~~P~~~DQ~~na----~rv~~~~t~~~l~~~v 415 (478)
+|+ ||.- |--+++.||+++|+|+|+....+ -++.. ..+...-+.++|++++
T Consensus 307 aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~~Eiv~~~~G~lv~~~d~~~La~~~ 365 (405)
T PRK10125 307 MDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA-AREVLQKSGGKTVSEEEVLQLAQLS 365 (405)
T ss_pred CCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC-hHHhEeCCcEEEECCCCHHHHHhcc
Confidence 888 7753 23468999999999999988754 11111 1122244667777643
No 128
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.37 E-value=0.48 Score=46.91 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASS--GFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPL 86 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 86 (478)
||||+++-.-..|++.-.+++-+.|+++ +.++++++...+.+.++ .. + .|.-+..-...
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~---~~--------p------~I~~vi~~~~~-- 61 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILK---LN--------P------EIDKVIIIDKK-- 61 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHh---cC--------h------Hhhhhcccccc--
Confidence 6899999999999999999999999997 69999999999999987 43 1 23211110000
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEe
Q 011724 87 NFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFW 150 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 150 (478)
. .. ........+.+.++. .++|+||.=....-...++...++|.-.-.
T Consensus 62 ---~-~~----------~~~~~~~~l~~~lr~--~~yD~vidl~~~~ksa~l~~~~~~~~r~g~ 109 (334)
T COG0859 62 ---K-KG----------LGLKERLALLRTLRK--ERYDAVIDLQGLLKSALLALLLGIPFRIGF 109 (334)
T ss_pred ---c-cc----------cchHHHHHHHHHhhc--cCCCEEEECcccHHHHHHHHHhCCCccccc
Confidence 0 01 001113345566664 469999988877778888888888876643
No 129
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.11 E-value=0.01 Score=46.94 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=44.6
Q ss_pred hhhHhHhhcCCCCCceEEEEecccccC---CH--HHHHHHHHHHhhCCCeEEEEECCC
Q 011724 271 ESECTQWLNTKPRGSVLYVSFGSYAHA---SK--NDIVEIALGLLLSEVSFVWVLRPD 323 (478)
Q Consensus 271 ~~~~~~~l~~~~~~~~Vyvs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~ 323 (478)
+..+..|+...+++|.|++|+||.... .. ..+..+++++...+..+|.+++..
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 455778999989999999999999853 22 478899999999999999999865
No 130
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.11 E-value=1.3 Score=43.92 Aligned_cols=103 Identities=10% Similarity=-0.005 Sum_probs=71.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEE-EcCCCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASS--GFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYA-TVSDGLPL 86 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~ 86 (478)
||||++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++ .. + .+.-+ .++.. .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~---~~--------P------~vd~vi~~~~~--~ 61 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLS---RM--------P------EVNEAIPMPLG--H 61 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHh---cC--------C------ccCEEEecccc--c
Confidence 689999999999999999999999994 99999999999998887 44 1 33322 22211 0
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEE
Q 011724 87 NFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNIS 148 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~ 148 (478)
.... +. ....+++.++. .++|++|.=....-...++...|+|.-.
T Consensus 62 ------~~~~-~~--------~~~~l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 62 ------GALE-IG--------ERRRLGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ------chhh-hH--------HHHHHHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0000 11 12234455554 5799999876566677778888887655
No 131
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.09 E-value=1.4 Score=42.18 Aligned_cols=113 Identities=11% Similarity=0.096 Sum_probs=71.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc--hhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCC
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS--IHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNF 88 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 88 (478)
||.|-. +-.-|+.-+..|...|.++||+|.+.+-.. ..+.++ .. ||.+..+..-
T Consensus 2 kVwiDI-~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd---~y---------------gf~~~~Igk~----- 57 (346)
T COG1817 2 KVWIDI-GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLD---LY---------------GFPYKSIGKH----- 57 (346)
T ss_pred eEEEEc-CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHH---Hh---------------CCCeEeeccc-----
Confidence 444432 445688899999999999999998776533 224444 33 6777665421
Q ss_pred CCCCCHH-HHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHH
Q 011724 89 DRSLNHD-QFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALV 156 (478)
Q Consensus 89 ~~~~~~~-~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 156 (478)
....+. ++.....+ ...+.++... ++||+.+. -.++.+.-+|..+|+|+|.+..+..+.
T Consensus 58 -g~~tl~~Kl~~~~eR--~~~L~ki~~~-----~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~ 117 (346)
T COG1817 58 -GGVTLKEKLLESAER--VYKLSKIIAE-----FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAE 117 (346)
T ss_pred -CCccHHHHHHHHHHH--HHHHHHHHhh-----cCCceEee-cCCcchhhHHhhcCCceEEecCChhHH
Confidence 112223 22222211 1223344444 67999999 568889999999999999998765543
No 132
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.97 E-value=0.12 Score=43.71 Aligned_cols=103 Identities=10% Similarity=0.100 Sum_probs=64.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCC
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDR 90 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 90 (478)
||++++.....| ...+++.|+++||+|++++.....+.... .. ++.+..++-..
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--~~---------------~i~~~~~~~~~------ 54 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--IE---------------GIKVIRLPSPR------ 54 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--hC---------------CeEEEEecCCC------
Confidence 577887666666 45779999999999999999665433320 22 78877774221
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCch---hhHHHHHHcC-CccEEEec
Q 011724 91 SLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFV---WSSMIAKKYN-LVNISFWT 151 (478)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~---~~~~~A~~lg-iP~v~~~~ 151 (478)
......+. + . .+..+++. .+||+|.+-.... .+..+++..| +|+|....
T Consensus 55 -k~~~~~~~-~----~-~l~k~ik~-----~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 55 -KSPLNYIK-Y----F-RLRKIIKK-----EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred -CccHHHHH-H----H-HHHHHhcc-----CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 01112221 1 1 23445554 5699998776543 3445678888 89986543
No 133
>PHA01633 putative glycosyl transferase group 1
Probab=95.67 E-value=0.4 Score=47.29 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=58.4
Q ss_pred cCCCeEEe---eccCh---HhhhhccCcceeeec---cCc-hhhHHHHhcCcceeccCc------ccch------hHHHH
Q 011724 343 ISGRGLIV---PWCSQ---IDVISHSAIGGFLTH---CGW-NSIQESIWCSVPLLCFPL------LTDQ------FTNRK 400 (478)
Q Consensus 343 ~~~nv~v~---~~ipq---~~vL~~~~v~~~ItH---GG~-~s~~Eal~~GvP~l~~P~------~~DQ------~~na~ 400 (478)
.++++.+. +++++ ..+++.+++ ||.- =|+ .++.||+++|+|+|+.-. ..|+ .+++.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 66788887 45554 367888888 8753 344 578999999999998633 2222 12221
Q ss_pred Hhhc----------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 011724 401 LVKS----------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKL 438 (478)
Q Consensus 401 rv~~----------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~ 438 (478)
.... ..+++++++++.+++...+.+....++++.++++
T Consensus 277 ~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 277 EYYDKEHGQKWKIHKFQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred HhcCcccCceeeecCCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 1111 4699999999999965322223334445444444
No 134
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.57 E-value=1.5 Score=43.38 Aligned_cols=106 Identities=12% Similarity=0.021 Sum_probs=71.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeE-EEEcCCCCCCC
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASS--GFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIR-YATVSDGLPLN 87 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ 87 (478)
|||++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++ .. + .|. ++.++....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~---~~--------p------~vd~vi~~~~~~~-- 61 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILS---EN--------P------DINALYGLDRKKA-- 61 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHh---cC--------C------CccEEEEeChhhh--
Confidence 68899999999999999999999995 99999999999998887 44 1 343 333332110
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEE
Q 011724 88 FDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISF 149 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~ 149 (478)
......+. . +-.++..++. .++|++|.-........++...|.|.-.-
T Consensus 62 ---~~~~~~~~-~--------~~~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 62 ---KAGERKLA-N--------QFHLIKVLRA--NRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred ---cchHHHHH-H--------HHHHHHHHHh--CCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 00000010 1 1124444543 57999997655566778888889887554
No 135
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=95.55 E-value=0.055 Score=53.52 Aligned_cols=92 Identities=16% Similarity=0.252 Sum_probs=63.3
Q ss_pred cCCCeEEeeccChHhhh---hccCcceeeecc-------Cc------hhhHHHHhcCcceeccCcccchhHHHHHhhc--
Q 011724 343 ISGRGLIVPWCSQIDVI---SHSAIGGFLTHC-------GW------NSIQESIWCSVPLLCFPLLTDQFTNRKLVKS-- 404 (478)
Q Consensus 343 ~~~nv~v~~~ipq~~vL---~~~~v~~~ItHG-------G~------~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~-- 404 (478)
..+||.+.+|+|+.++. +. +.+++...- .+ +-+.+++++|+|+|+.+ +...+..|++
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~~ 279 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVENG 279 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhCC
Confidence 56789999999986653 43 443332211 11 22677899999999864 4556666665
Q ss_pred ----ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 011724 405 ----SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLEN 440 (478)
Q Consensus 405 ----~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~ 440 (478)
--+.+++.+++.++.. ++..++++|++++++++++
T Consensus 280 ~G~~v~~~~el~~~l~~~~~-~~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 280 LGFVVDSLEELPEIIDNITE-EEYQEMVENVKKISKLLRN 318 (333)
T ss_pred ceEEeCCHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHhc
Confidence 2266889999988653 2246689999999999987
No 136
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.42 E-value=0.13 Score=40.09 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=52.0
Q ss_pred ccCchhhHHHHhcCcceeccCcccchhHHHHHhhc------ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHh
Q 011724 370 HCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS------SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALS 443 (478)
Q Consensus 370 HGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~------~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~ 443 (478)
+|-..-+.|++++|+|+|.-.. ......+.. .-+.+++.++|..+++ |+..+++.++ .-++-+.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~---~~~~~~~ia~---~a~~~v~ 78 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFEDGEHIITYNDPEELAEKIEYLLE---NPEERRRIAK---NARERVL 78 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCCCCeEEEECCHHHHHHHHHHHHC---CHHHHHHHHH---HHHHHHH
Confidence 4556689999999999998866 333333322 2289999999999999 7765444333 3333333
Q ss_pred cCCChHHHHHHHHH
Q 011724 444 ADGSSQKNFNQFIN 457 (478)
Q Consensus 444 ~gg~~~~~~~~~i~ 457 (478)
...+....+++|++
T Consensus 79 ~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 79 KRHTWEHRAEQILE 92 (92)
T ss_pred HhCCHHHHHHHHHC
Confidence 36777777777653
No 137
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.12 E-value=3.7 Score=40.41 Aligned_cols=102 Identities=12% Similarity=0.023 Sum_probs=69.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeE-EEEcCCCCCCC
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASS--GFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIR-YATVSDGLPLN 87 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ 87 (478)
|||++-..+.|++.-..++.+.|++. +.+|++++.+.+.+.++ .. + .+. ++.++.. ..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~---~~--------p------~id~v~~~~~~--~~ 61 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLE---RM--------P------EIRQAIDMPLG--HG 61 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHh---cC--------c------hhceeeecCCc--cc
Confidence 68999999999999999999999985 99999999998888887 44 1 332 1222211 00
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEE
Q 011724 88 FDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNIS 148 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~ 148 (478)
...+. ....+++.++. .++|++|.-........++...|+|.-.
T Consensus 62 ------~~~~~---------~~~~~~~~lr~--~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 62 ------ALELT---------ERRRLGRSLRE--ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ------chhhh---------HHHHHHHHHhh--cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 00011 11234455553 5799999987666677778888887654
No 138
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.15 Score=52.39 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=72.3
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhc----cCCCeEEeeccC---
Q 011724 282 PRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIK----ISGRGLIVPWCS--- 354 (478)
Q Consensus 282 ~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~----~~~nv~v~~~ip--- 354 (478)
++..+||+||+......++.+..=+.-++..+.-++|..+++. .+.....+.+..+ .+.++++.+-.|
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~-----~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~ 501 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD-----DAEINARLRDLAEREGVDSERLRFLPPAPNED 501 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC-----cHHHHHHHHHHHHHcCCChhheeecCCCCCHH
Confidence 4566999999999999999999999999999999999988641 0111111111100 134555555555
Q ss_pred hHhhhhccCcceee---eccCchhhHHHHhcCcceeccC
Q 011724 355 QIDVISHSAIGGFL---THCGWNSIQESIWCSVPLLCFP 390 (478)
Q Consensus 355 q~~vL~~~~v~~~I---tHGG~~s~~Eal~~GvP~l~~P 390 (478)
+.+=+.-+|+ |+ -.||..|..|+|+.|||||.++
T Consensus 502 h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~ 538 (620)
T COG3914 502 HRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV 538 (620)
T ss_pred HHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec
Confidence 4455556666 76 4799999999999999999876
No 139
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.63 E-value=0.091 Score=44.96 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHHHHHHH
Q 011724 25 PFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRSLNHDQFMECLLHV 104 (478)
Q Consensus 25 p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (478)
-+..|+++|.++||+|++++.......-+ .... ++.+..++-..... ......++.
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~---------------~~~~~~~~~~~~~~---~~~~~~~~~----- 61 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE-EEED---------------GVRVHRLPLPRRPW---PLRLLRFLR----- 61 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S-EEET---------------TEEEEEE--S-SSS---GGGHCCHHH-----
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc-cccC---------------CceEEeccCCccch---hhhhHHHHH-----
Confidence 46789999999999999999766555332 0012 67777766221111 000111111
Q ss_pred hhHHHHHHHHHhhccCCCccEEEEcCCc--hhhHHHHHHcCCccEEEec
Q 011724 105 FSAHVDELVGNLIQLNPEMNCLVTDTFF--VWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 105 ~~~~~~~ll~~l~~~~~~pD~vi~D~~~--~~~~~~A~~lgiP~v~~~~ 151 (478)
.+..++.. +. .+||+|.+.... ..+..+....++|+|....
T Consensus 62 ---~~~~~l~~-~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 62 ---RLRRLLAA-RR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp ---HHHHHCHH-CT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred ---HHHHHHhh-hc--cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 12233311 22 679999998743 2233334378999988753
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.42 E-value=3.2 Score=39.69 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=66.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeE-EEEcCCCCCCC
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASS--GFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIR-YATVSDGLPLN 87 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ 87 (478)
|||++-..+.|++.-+.++.++|+++ +.+|++++.....+.++ .. + .+. ++.++...
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~---~~--------p------~id~v~~~~~~~--- 60 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLE---LM--------P------EVDRVIVLPKKH--- 60 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHh---cC--------C------ccCEEEEcCCcc---
Confidence 68999999999999999999999996 59999999999988887 43 1 332 22332110
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEE
Q 011724 88 FDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNIS 148 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~ 148 (478)
...... .+..++..++. .++|+++.-........++...+++...
T Consensus 61 --~~~~~~------------~~~~~~~~l~~--~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 61 --GKLGLG------------ARRRLARALRR--RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred --cccchH------------HHHHHHHHHhh--cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 001111 12234444543 5699999877665555566666665543
No 141
>PRK14098 glycogen synthase; Provisional
Probab=94.42 E-value=1.1 Score=46.95 Aligned_cols=161 Identities=11% Similarity=0.010 Sum_probs=84.5
Q ss_pred eEEEEecccccC-CHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChH---hhhhc
Q 011724 286 VLYVSFGSYAHA-SKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQI---DVISH 361 (478)
Q Consensus 286 ~Vyvs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~---~vL~~ 361 (478)
.++...|..... ..+.+...+..+.+.+.+++++-.+... ..+.+ ..+..+ .++++.+..+++.. .+++.
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~---~~~~l-~~l~~~--~~~~V~~~g~~~~~~~~~~~a~ 381 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKE---YEKRF-QDFAEE--HPEQVSVQTEFTDAFFHLAIAG 381 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHH---HHHHH-HHHHHH--CCCCEEEEEecCHHHHHHHHHh
Confidence 355666766532 2333333334444446666555332200 00011 122223 56789888888763 58888
Q ss_pred cCcceeeecc---Cc-hhhHHHHhcCcceeccCccc--chh-------HHHHHhhcccCHHHHHHHHHHHhCCCChHHHH
Q 011724 362 SAIGGFLTHC---GW-NSIQESIWCSVPLLCFPLLT--DQF-------TNRKLVKSSITKEEVSEKINRLMSGKSSDELR 428 (478)
Q Consensus 362 ~~v~~~ItHG---G~-~s~~Eal~~GvP~l~~P~~~--DQ~-------~na~rv~~~~t~~~l~~~v~~ll~~~~~~~~r 428 (478)
+|+ |+.-. |+ .+.+||+++|+|.|+....+ |.- .|+ .+....+++++.++|.+++.--++++..
T Consensus 382 aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G-~l~~~~d~~~la~ai~~~l~~~~~~~~~ 458 (489)
T PRK14098 382 LDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSG-FIFHDYTPEALVAKLGEALALYHDEERW 458 (489)
T ss_pred CCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCce-eEeCCCCHHHHHHHHHHHHHHHcCHHHH
Confidence 998 77532 33 37789999999888776422 221 111 1112567899999999876300033222
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011724 429 KNIKEVRKKLENALSADGSSQKNFNQFINDVQF 461 (478)
Q Consensus 429 ~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~ 461 (478)
++++ +++....-|-...++++++-+.+
T Consensus 459 ---~~~~---~~~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 459 ---EELV---LEAMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred ---HHHH---HHHhcCCCChHHHHHHHHHHHHH
Confidence 2222 22223345555555666555543
No 142
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.34 E-value=0.34 Score=43.85 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=64.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCC-CCC-
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGL-PLN- 87 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~- 87 (478)
||||+.-=-+. +---+.+|+++|.+.||+|+++.+...+...-.++ .....++......+. +.+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~si-------------t~~~pl~~~~~~~~~~~~~~ 66 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSI-------------TLHKPLRVTEVEPGHDPGGV 66 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS---------------SSSEEEEEEEE-TTCCSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceee-------------cCCCCeEEEEEEecccCCCC
Confidence 67777764444 45557789999988899999999998776654111 222245553322111 111
Q ss_pred --CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCC-------------chhhHHHHHHcCCccEEEecc
Q 011724 88 --FDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTF-------------FVWSSMIAKKYNLVNISFWTE 152 (478)
Q Consensus 88 --~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~-------------~~~~~~~A~~lgiP~v~~~~~ 152 (478)
..-......-.... +..++.. .+||+||+-.. +.++..-|...|||.|.++..
T Consensus 67 ~~~~v~GTPaDcv~~a-------l~~~~~~-----~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 67 EAYAVSGTPADCVKLA-------LDGLLPD-----KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp EEEEESS-HHHHHHHH-------HHCTSTT-----SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred CEEEEcCcHHHHHHHH-------HHhhhcc-----CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 11123333333332 1122221 35999998531 145567778889999999753
No 143
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.30 E-value=0.38 Score=42.35 Aligned_cols=43 Identities=7% Similarity=0.085 Sum_probs=32.4
Q ss_pred HHHHHHHhhccCCCccEEEEcCCchhhHHHHHHc-CCccEEEec
Q 011724 109 VDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKY-NLVNISFWT 151 (478)
Q Consensus 109 ~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~l-giP~v~~~~ 151 (478)
+...+..|+++++.||+||.....-.++-+-..+ ++|.+.++-
T Consensus 53 v~~a~~~L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 53 VARAARQLRAQGFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHHHHHHHHcCCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 3345566666679999999998666677777888 789988764
No 144
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.85 E-value=0.49 Score=49.14 Aligned_cols=103 Identities=17% Similarity=0.316 Sum_probs=71.5
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhh---hhc-cCCCeEEeeccC---
Q 011724 282 PRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEE---KIK-ISGRGLIVPWCS--- 354 (478)
Q Consensus 282 ~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~---~~~-~~~nv~v~~~ip--- 354 (478)
++..+||++|--.....+..++.-..-|...+..++|..... ...| .+|.. .+- .|++|.+.+-+.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfP----a~ge---~rf~ty~~~~Gl~p~riifs~va~k~e 828 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFP----AVGE---QRFRTYAEQLGLEPDRIIFSPVAAKEE 828 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecc----ccch---HHHHHHHHHhCCCccceeeccccchHH
Confidence 445689999988888899999999999999999999998644 1111 12211 110 255666666555
Q ss_pred --hHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcc
Q 011724 355 --QIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLL 392 (478)
Q Consensus 355 --q~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~ 392 (478)
+...|....+.-+.+. |..|.++.|+.|||||.+|.-
T Consensus 829 Hvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge 867 (966)
T KOG4626|consen 829 HVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGE 867 (966)
T ss_pred HHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccH
Confidence 2334444433446665 788999999999999999974
No 145
>PHA01630 putative group 1 glycosyl transferase
Probab=93.59 E-value=2.3 Score=41.94 Aligned_cols=86 Identities=6% Similarity=0.013 Sum_probs=50.8
Q ss_pred eccCh---HhhhhccCcceeee---ccC-chhhHHHHhcCcceeccCccc--chhH---HHHHh----------------
Q 011724 351 PWCSQ---IDVISHSAIGGFLT---HCG-WNSIQESIWCSVPLLCFPLLT--DQFT---NRKLV---------------- 402 (478)
Q Consensus 351 ~~ipq---~~vL~~~~v~~~It---HGG-~~s~~Eal~~GvP~l~~P~~~--DQ~~---na~rv---------------- 402 (478)
.++|+ ..+++.+|+ ||. ..| ..++.||+++|+|+|+.-..+ |.-. |...+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 34664 446888888 663 333 468999999999999976532 3221 11111
Q ss_pred hc--ccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 011724 403 KS--SITKEEVSEKINRLMSGKSSDELRKNIKEVRKKL 438 (478)
Q Consensus 403 ~~--~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~ 438 (478)
-. ..+.+++.+++.+++.+.++++.+++.+.-++..
T Consensus 274 G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~ 311 (331)
T PHA01630 274 GYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILY 311 (331)
T ss_pred ccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 00 3467888888889887321145555444433333
No 146
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.45 E-value=0.97 Score=39.10 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=38.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhh
Q 011724 7 KPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHH 50 (478)
Q Consensus 7 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 50 (478)
+.+|||++.-.|+-|-..-++.|++.|.++|+.|-=+-+++..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 44699999999999999999999999999999998777776543
No 147
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=91.77 E-value=3.1 Score=39.19 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCC-CCC
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDG-LPL 86 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (478)
++||||+.-=-|. |.--+.+|++.|.+.| +|+++.+...+.-.-. +......+++..+... -..
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~-------------ait~~~pl~~~~~~~~~~~~ 68 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSH-------------AMTLGVPLRIKEYQKNNRFF 68 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcc-------------cccCCCCeEEEEEccCCCce
Confidence 4589887652222 3345777999998888 7998888876655531 1122335666554311 000
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCC-------------chhhHHHHHHcCCccEEEec
Q 011724 87 NFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTF-------------FVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~-------------~~~~~~~A~~lgiP~v~~~~ 151 (478)
...-......-.... +..++ . .+||+||+-.. +.++..-|..+|||.|.++.
T Consensus 69 ~y~v~GTPaDCV~la-------l~~~~---~---~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 69 GYTVSGTPVDCIKVA-------LSHIL---P---EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred EEEEcCcHHHHHHHH-------HHhhc---C---CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 011112333332221 11222 1 35899987532 24566677888999999974
No 148
>PLN02939 transferase, transferring glycosyl groups
Probab=91.69 E-value=3.9 Score=45.64 Aligned_cols=75 Identities=7% Similarity=-0.001 Sum_probs=51.0
Q ss_pred cCCCeEEeeccChH---hhhhccCcceeeec---cC-chhhHHHHhcCcceeccCccc--ch------------hHHHHH
Q 011724 343 ISGRGLIVPWCSQI---DVISHSAIGGFLTH---CG-WNSIQESIWCSVPLLCFPLLT--DQ------------FTNRKL 401 (478)
Q Consensus 343 ~~~nv~v~~~ipq~---~vL~~~~v~~~ItH---GG-~~s~~Eal~~GvP~l~~P~~~--DQ------------~~na~r 401 (478)
..++|.+..+.+.. .+++.+|+ ||.- =| ..+.+||++||+|.|+....+ |- ..|+..
T Consensus 835 l~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfL 912 (977)
T PLN02939 835 SNNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFT 912 (977)
T ss_pred CCCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEE
Confidence 35678888888764 58999998 8852 23 348999999999998876532 21 122211
Q ss_pred hhcccCHHHHHHHHHHHhC
Q 011724 402 VKSSITKEEVSEKINRLMS 420 (478)
Q Consensus 402 v~~~~t~~~l~~~v~~ll~ 420 (478)
+ ...+++++.+++.+++.
T Consensus 913 f-~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 913 F-LTPDEQGLNSALERAFN 930 (977)
T ss_pred e-cCCCHHHHHHHHHHHHH
Confidence 1 14578889999888764
No 149
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=90.75 E-value=5.8 Score=38.73 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=31.4
Q ss_pred ChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCccc
Q 011724 354 SQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLT 393 (478)
Q Consensus 354 pq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~ 393 (478)
|+...|+.++. ++||=-..+-+.||+..|+|+.++|+-.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 67888998887 3444445588899999999999999875
No 150
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.52 E-value=3.6 Score=35.46 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=23.9
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 19 LQGHVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 19 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
..|=-.-+..|+++|+++||+|++++.....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 3466677899999999999999999776533
No 151
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=90.27 E-value=1.8 Score=44.73 Aligned_cols=102 Identities=14% Similarity=0.196 Sum_probs=67.9
Q ss_pred eeccChHh---hhhccCcceeee---ccCc-hhhHHHHhcCcc----eeccCccc--chhHHHHHhhcccCHHHHHHHHH
Q 011724 350 VPWCSQID---VISHSAIGGFLT---HCGW-NSIQESIWCSVP----LLCFPLLT--DQFTNRKLVKSSITKEEVSEKIN 416 (478)
Q Consensus 350 ~~~ipq~~---vL~~~~v~~~It---HGG~-~s~~Eal~~GvP----~l~~P~~~--DQ~~na~rv~~~~t~~~l~~~v~ 416 (478)
.+.+++.+ +++.+|+ |+. +=|+ .+..||+++|+| +|+--..+ ++..+ ..+....+.++++++|.
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~~-gllVnP~d~~~lA~aI~ 417 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELNG-ALLVNPYDIDGMADAIA 417 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhCC-cEEECCCCHHHHHHHHH
Confidence 35666644 5778888 775 4465 478899999999 66555443 33322 22223668899999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011724 417 RLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQ 460 (478)
Q Consensus 417 ~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~ 460 (478)
++|+.+ ..+.+++.+++.+...+ .+...-++++++.+.
T Consensus 418 ~aL~~~-~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 418 RALTMP-LEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred HHHcCC-HHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 999732 34556666666666554 677777888887663
No 152
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.00 E-value=2 Score=38.73 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=37.4
Q ss_pred cCCCeEEeeccCh----HhhhhccCcceeeeccC----chhhHHHHhcCcceeccCccc
Q 011724 343 ISGRGLIVPWCSQ----IDVISHSAIGGFLTHCG----WNSIQESIWCSVPLLCFPLLT 393 (478)
Q Consensus 343 ~~~nv~v~~~ipq----~~vL~~~~v~~~ItHGG----~~s~~Eal~~GvP~l~~P~~~ 393 (478)
...|+.+.+++++ ..+++.+++ +|+-.. .+++.||+++|+|+|+.+...
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 4678999988732 334444788 777776 789999999999999988754
No 153
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=89.72 E-value=5.5 Score=37.52 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=61.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcC-CCCC-CC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVS-DGLP-LN 87 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~ 87 (478)
||||+.-=-|. |---+.+|+++|++ +|+|+++.+...+.-.. . +......++...+. ++.. ..
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g----~---------sit~~~pl~~~~~~~~~~~~~~ 65 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASS----H---------SITIYEPIIIKEVKLEGINSKA 65 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCcccc----c---------cccCCCCeEEEeeccCCCCccE
Confidence 56666542222 22237789999965 68999999888665543 1 11222245555443 1100 00
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCC-------------chhhHHHHHHcCCccEEEec
Q 011724 88 FDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTF-------------FVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~-------------~~~~~~~A~~lgiP~v~~~~ 151 (478)
..-......-.... +..++ . .+||+||+-.. +.++..-|..+|||.|.++.
T Consensus 66 ~~v~GTPaDcV~la-------l~~l~---~---~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 66 YSISGTPADCVRVA-------LDKLV---P---DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred EEECCcHHHHHHHH-------HHHhc---C---CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 11112222222221 11222 1 46999997531 24566778888999999974
No 154
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=89.18 E-value=1.6 Score=45.26 Aligned_cols=102 Identities=17% Similarity=0.274 Sum_probs=61.0
Q ss_pred EeeccChHh---hhhccCcceeee---ccCc-hhhHHHHhcCcc----eeccCcc--cchhHHHHHhhcccCHHHHHHHH
Q 011724 349 IVPWCSQID---VISHSAIGGFLT---HCGW-NSIQESIWCSVP----LLCFPLL--TDQFTNRKLVKSSITKEEVSEKI 415 (478)
Q Consensus 349 v~~~ipq~~---vL~~~~v~~~It---HGG~-~s~~Eal~~GvP----~l~~P~~--~DQ~~na~rv~~~~t~~~l~~~v 415 (478)
+.+++++.+ +++.+++ ||. +-|+ .++.||+++|+| +|+--.. .++..++ .+....+.++++++|
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~~~~g-~lv~p~d~~~la~ai 421 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEELSGA-LLVNPYDIDEVADAI 421 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccchhhcCCC-EEECCCCHHHHHHHH
Confidence 346777644 5778888 763 4565 477999999999 5444332 2332221 222255789999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011724 416 NRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDV 459 (478)
Q Consensus 416 ~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~ 459 (478)
.++++.+ ..+.+++.++..+..++ .+...-++++++++
T Consensus 422 ~~~l~~~-~~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 422 HRALTMP-LEERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred HHHHcCC-HHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 9999722 12333333333333332 56666677777654
No 155
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=89.15 E-value=6.5 Score=36.86 Aligned_cols=112 Identities=14% Similarity=0.037 Sum_probs=63.2
Q ss_pred CEEEEEcCCCcc-CHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCC--CCCC
Q 011724 10 PHAIAICYPLQG-HVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSD--GLPL 86 (478)
Q Consensus 10 ~~il~~~~~~~G-H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~ 86 (478)
||||+.- -.| |.--+.+|+++|++.| +|+++.+...+.....+ ......+++..++. +. +
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~a-------------it~~~pl~~~~~~~~~~~-~ 63 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQRSGTGHS-------------LTLFEPLRVGQVKVKNGA-H 63 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccC-------------cCCCCCeEEEEeccCCCc-c
Confidence 4666543 334 3344777999999988 89999998876665411 12223566665541 11 0
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCC-------------chhhHHHHHHcCCccEEEec
Q 011724 87 NFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTF-------------FVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~-------------~~~~~~~A~~lgiP~v~~~~ 151 (478)
...-......-.... +..++ . .+||+||+-.. +.++..-|..+|||.|.++.
T Consensus 64 ~~~v~GTPaDcv~~g-------l~~l~---~---~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 64 IYAVDGTPTDCVILG-------INELM---P---EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred EEEEcCcHHHHHHHH-------HHHhc---c---CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 011112233322221 11222 1 35899987532 24566778888999999974
No 156
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=89.04 E-value=14 Score=32.94 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCEEEEEc---CCC-ccCHHHHHH-HHHHHHhCCCeEEEEeCCchhhh
Q 011724 9 KPHAIAIC---YPL-QGHVIPFVN-LALKLASSGFTITFVNTHSIHHQ 51 (478)
Q Consensus 9 ~~~il~~~---~~~-~GH~~p~l~-La~~L~~rGh~Vt~~~~~~~~~~ 51 (478)
|.||+++- .|+ +|=+-=++. |+..|+++||+||+++.....+.
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~ 48 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPY 48 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCC
Confidence 56887776 343 466655554 88888889999999998765543
No 157
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=86.62 E-value=4.7 Score=37.71 Aligned_cols=112 Identities=17% Similarity=0.144 Sum_probs=63.5
Q ss_pred CEEEEEcCCCcc-CHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCC
Q 011724 10 PHAIAICYPLQG-HVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNF 88 (478)
Q Consensus 10 ~~il~~~~~~~G-H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 88 (478)
||||+.- -.| |.--+.+|++.|. .+++|+++.+...+.-+...+ .....++...+... ..
T Consensus 1 mrILlTN--DDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl-------------Tl~~Plr~~~~~~~---~~ 61 (252)
T COG0496 1 MRILLTN--DDGIHAPGIRALARALR-EGADVTVVAPDREQSGASHSL-------------TLHEPLRVRQVDNG---AY 61 (252)
T ss_pred CeEEEec--CCccCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc-------------ccccCceeeEeccc---eE
Confidence 4555543 233 4445677899998 999999999998776664111 12224554443321 00
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcC-------------CchhhHHHHHHcCCccEEEecc
Q 011724 89 DRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDT-------------FFVWSSMIAKKYNLVNISFWTE 152 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~-------------~~~~~~~~A~~lgiP~v~~~~~ 152 (478)
.-........... +..+++. ..||+||+.. .+.++.+=|..+|||.|.++..
T Consensus 62 av~GTPaDCV~la-------l~~l~~~-----~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 62 AVNGTPADCVILG-------LNELLKE-----PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred EecCChHHHHHHH-------HHHhccC-----CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 0112222322221 2334433 3489998743 2245666688899999999753
No 158
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=86.14 E-value=9 Score=33.76 Aligned_cols=31 Identities=13% Similarity=-0.037 Sum_probs=25.0
Q ss_pred CCccEEEEcCCc--hhhHHHHHHc------CCccEEEec
Q 011724 121 PEMNCLVTDTFF--VWSSMIAKKY------NLVNISFWT 151 (478)
Q Consensus 121 ~~pD~vi~D~~~--~~~~~~A~~l------giP~v~~~~ 151 (478)
.+||+||+..-. .....+|+.+ |.+.|.+-+
T Consensus 91 ~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 91 ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 469999999744 5677889999 999998853
No 159
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=86.12 E-value=14 Score=34.84 Aligned_cols=113 Identities=8% Similarity=-0.004 Sum_probs=60.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCC--CCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSD--GLPLN 87 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~ 87 (478)
||||+.-=-|. |---+.+|+++|++ +|+|+++.+...+.-...+ ......++...+.. +. ..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~a-------------it~~~pl~~~~~~~~~~~-~~ 64 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHA-------------ITIRVPLWAKKVFISERF-VA 64 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcccccc-------------ccCCCCceEEEeecCCCc-cE
Confidence 56666552222 33447789999965 6899999988866555311 12222455444321 11 00
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCC-------------chhhHHHHHHcCCccEEEec
Q 011724 88 FDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTF-------------FVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~-------------~~~~~~~A~~lgiP~v~~~~ 151 (478)
..-......-.... +..++ . .+||+||+-.. +.++..-|..+|||.|.++.
T Consensus 65 y~v~GTPaDcV~la-------l~~~~---~---~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 65 YATTGTPADCVKLG-------YDVIM---D---KKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred EEECCcHHHHHHHH-------HHhhc---c---CCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 11112333332222 11222 1 35999987531 24556667788999999974
No 160
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=85.95 E-value=2 Score=36.47 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=40.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
|+.+|++.+.++-+|-.-..-++..|..+|++|++.+.....+.+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~ 47 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFI 47 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 5689999999999999999999999999999999999877655443
No 161
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=85.71 E-value=15 Score=34.92 Aligned_cols=112 Identities=9% Similarity=-0.003 Sum_probs=60.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCC-CCCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSD-GLPLNF 88 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~ 88 (478)
||||+.-=-|. |---+.+|++.|.+.| +|+++.+...+.-.- . +......++...+.. +. +..
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g----~---------aiT~~~pl~~~~~~~~~~-~~y 64 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATG----L---------GITLHKPLRMYEVDLCGF-KVY 64 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCcccc----c---------cccCCCCcEEEEeccCCc-ceE
Confidence 46665542222 4456788999998888 799888877655443 1 111222455554431 11 001
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcC-----------C---chhhHHHHHHcCCccEEEec
Q 011724 89 DRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDT-----------F---FVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~-----------~---~~~~~~~A~~lgiP~v~~~~ 151 (478)
.-......-....+ ..+. .+||+||+-. . +.++..-|..+|||.|.+|.
T Consensus 65 ~v~GTPaDCV~lal-----------~~l~---~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 65 ATSGTPSDTIYLAT-----------YGLG---RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred EeCCCHHHHHHHHH-----------Hhcc---CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 11123333322211 1121 4699998732 1 14456667888999999974
No 162
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=85.30 E-value=1.4 Score=36.23 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=29.0
Q ss_pred CEEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 10 PHAIAICYPLQG---HVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 10 ~~il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
|||+|+.-|-.+ .-.-.++|+.+-++|||+|.++......
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 789998877554 4467889999999999999999987754
No 163
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=84.71 E-value=19 Score=37.03 Aligned_cols=91 Identities=9% Similarity=0.083 Sum_probs=62.7
Q ss_pred CCeEEe-eccC-h-HhhhhccCcceeeeccC--chhhHHHHhcCcceeccCcccchh-HHH-HHhhcccCHHHHHHHHHH
Q 011724 345 GRGLIV-PWCS-Q-IDVISHSAIGGFLTHCG--WNSIQESIWCSVPLLCFPLLTDQF-TNR-KLVKSSITKEEVSEKINR 417 (478)
Q Consensus 345 ~nv~v~-~~ip-q-~~vL~~~~v~~~ItHGG--~~s~~Eal~~GvP~l~~P~~~DQ~-~na-~rv~~~~t~~~l~~~v~~ 417 (478)
+|+.+. ++.+ + ..++..|++=+-|+||+ ..++.||+.+|+|++..=...... ... ..+...-+.+++.++|.+
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~g~l~~~~~~~~m~~~i~~ 407 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIASENIFEHNEVDQLISKLKD 407 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcccccCCceecCCCHHHHHHHHHH
Confidence 666666 7777 3 67999999988889977 479999999999999765532211 111 122225678999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHH
Q 011724 418 LMSGKSSDELRKNIKEVRKKL 438 (478)
Q Consensus 418 ll~~~~~~~~r~~a~~l~~~~ 438 (478)
+|. +++-.+.+...+++.
T Consensus 408 lL~---d~~~~~~~~~~q~~~ 425 (438)
T TIGR02919 408 LLN---DPNQFRELLEQQREH 425 (438)
T ss_pred Hhc---CHHHHHHHHHHHHHH
Confidence 998 775444444444444
No 164
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=84.29 E-value=17 Score=34.14 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=61.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFD 89 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 89 (478)
||||+.-=-|. |.--+.+|++.|.+. |+|+++.+...+.-... +......+++..+... ...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~-------------ait~~~pl~~~~~~~~---~~~ 62 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASH-------------SLTLTRPLRVEKVDNG---FYA 62 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcc-------------cccCCCCeEEEEecCC---eEE
Confidence 46665542221 344477899999988 79999998886655541 1122225665554311 011
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCC-------------chhhHHHHHHcCCccEEEec
Q 011724 90 RSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTF-------------FVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~-------------~~~~~~~A~~lgiP~v~~~~ 151 (478)
-......-.... +..++. .+||+||+-.. +.++..-|...|||.|.++.
T Consensus 63 v~GTPaDcV~~g-------l~~l~~------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 63 VDGTPTDCVHLA-------LNGLLD------PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred ECCcHHHHHHHH-------HHhhcc------CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 112222222221 112221 35899987532 24566777888999999974
No 165
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=83.85 E-value=14 Score=36.27 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=34.1
Q ss_pred CCEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhh
Q 011724 9 KPHAIAIC-YPLQGHVIPFVNLALKLASSGFTITFVNTHSIHH 50 (478)
Q Consensus 9 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 50 (478)
++||+|++ -+|-|-..-..++|-.|++.|.+|.+++++....
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 47888887 5677999999999999999999888887766443
No 166
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=83.09 E-value=1.7 Score=36.29 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=36.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
|||++...++.+=+. ...+.++|.++|++|.++.++.....+.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~ 43 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVT 43 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhh
Confidence 688888888766666 9999999999999999999999988887
No 167
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=83.04 E-value=43 Score=31.69 Aligned_cols=84 Identities=13% Similarity=0.298 Sum_probs=53.7
Q ss_pred CCCeEEeeccC---hHhhhhccCcceeeec---cCch-hhHHHHhcCcceeccCccc-chhHHH---HHhhcccCHHHHH
Q 011724 344 SGRGLIVPWCS---QIDVISHSAIGGFLTH---CGWN-SIQESIWCSVPLLCFPLLT-DQFTNR---KLVKSSITKEEVS 412 (478)
Q Consensus 344 ~~nv~v~~~ip---q~~vL~~~~v~~~ItH---GG~~-s~~Eal~~GvP~l~~P~~~-DQ~~na---~rv~~~~t~~~l~ 412 (478)
..++...++++ ...++..+++ ++.- .|.| ++.||+++|+|++...... .+..+. ..+....+.+++.
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~~~~~~ 333 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGDVEELA 333 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCCHHHHH
Confidence 46788889988 3446777777 6655 3554 4599999999998877631 111111 1122223579999
Q ss_pred HHHHHHhCCCChHHHHHHHH
Q 011724 413 EKINRLMSGKSSDELRKNIK 432 (478)
Q Consensus 413 ~~v~~ll~~~~~~~~r~~a~ 432 (478)
+++..+++ +.+.++...
T Consensus 334 ~~i~~~~~---~~~~~~~~~ 350 (381)
T COG0438 334 DALEQLLE---DPELREELG 350 (381)
T ss_pred HHHHHHhc---CHHHHHHHH
Confidence 99999998 553333333
No 168
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=82.56 E-value=4.8 Score=42.38 Aligned_cols=71 Identities=8% Similarity=0.088 Sum_probs=49.7
Q ss_pred CCeEEeeccC--h-HhhhhccCcceeeecc---CchhhHHHHhcCcceecc-C-cccchhHHHHHhhcccCHHHHHHHHH
Q 011724 345 GRGLIVPWCS--Q-IDVISHSAIGGFLTHC---GWNSIQESIWCSVPLLCF-P-LLTDQFTNRKLVKSSITKEEVSEKIN 416 (478)
Q Consensus 345 ~nv~v~~~ip--q-~~vL~~~~v~~~ItHG---G~~s~~Eal~~GvP~l~~-P-~~~DQ~~na~rv~~~~t~~~l~~~v~ 416 (478)
.+|.+.++.. + ..++.++.+ +|.=+ |.++..||+++|+|+|-. | -...-..|+.. --+..+|.+++.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqInyg~~~~V~d~~NG~l---i~d~~~l~~al~ 483 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQINKVETDYVEHNKNGYI---IDDISELLKALD 483 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCeeecCCceeeEcCCCcEE---eCCHHHHHHHHH
Confidence 5777888887 3 456777777 88766 778999999999999910 0 01111122222 357899999999
Q ss_pred HHhC
Q 011724 417 RLMS 420 (478)
Q Consensus 417 ~ll~ 420 (478)
.+|.
T Consensus 484 ~~L~ 487 (519)
T TIGR03713 484 YYLD 487 (519)
T ss_pred HHHh
Confidence 9998
No 169
>PRK14099 glycogen synthase; Provisional
Probab=82.26 E-value=46 Score=34.80 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=29.5
Q ss_pred CCCEEEEEc---CC---CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 8 PKPHAIAIC---YP---LQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 8 ~~~~il~~~---~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
+.|||++++ .| +.|=-.-.-+|.++|+++||+|.++.+.-
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 349999987 22 22444456678899999999999999843
No 170
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=81.76 E-value=2 Score=43.06 Aligned_cols=105 Identities=14% Similarity=0.218 Sum_probs=64.3
Q ss_pred cCCCeEEe-eccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHHHHhhc----------ccCHHHH
Q 011724 343 ISGRGLIV-PWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS----------SITKEEV 411 (478)
Q Consensus 343 ~~~nv~v~-~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~----------~~t~~~l 411 (478)
..+++..+ +..+-.++|..+++ +||--. ..+.|.+..+.|++....=.|+....+.+-. .-+.++|
T Consensus 250 ~~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL 326 (369)
T PF04464_consen 250 DNSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEEL 326 (369)
T ss_dssp -TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHH
T ss_pred cCCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHH
Confidence 45677766 55678899999999 999974 4889999999999987665554433311111 5578999
Q ss_pred HHHHHHHhCCCChHH-HHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 011724 412 SEKINRLMSGKSSDE-LRKNIKEVRKKLENALSADGSSQKNFNQ 454 (478)
Q Consensus 412 ~~~v~~ll~~~~~~~-~r~~a~~l~~~~~~a~~~gg~~~~~~~~ 454 (478)
.++|.++++ ++. ++++.++..+++-. ...|.++++.++.
T Consensus 327 ~~~i~~~~~---~~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~ 366 (369)
T PF04464_consen 327 IEAIENIIE---NPDEYKEKREKFRDKFFK-YNDGNSSERIVNY 366 (369)
T ss_dssp HHHHTTHHH---HHHHTHHHHHHHHHHHST-T--S-HHHHHHHH
T ss_pred HHHHHhhhh---CCHHHHHHHHHHHHHhCC-CCCchHHHHHHHH
Confidence 999999987 543 45666677777744 2445555444433
No 171
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=80.65 E-value=16 Score=34.79 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=36.3
Q ss_pred CCeEEeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCc
Q 011724 345 GRGLIVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPL 391 (478)
Q Consensus 345 ~nv~v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~ 391 (478)
..+.+.+-++-.++|.+++. +||-.+- .-.||+.+|+|++++..
T Consensus 183 ~~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 183 NVVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred CeEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 34455577888999999999 8888654 77899999999999875
No 172
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.99 E-value=3.2 Score=34.03 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=35.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQI 52 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 52 (478)
||++.+.++-.|...+.-++..|.++|++|++.......+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l 42 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEI 42 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 588999999999999999999999999999988765544333
No 173
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=79.87 E-value=7.3 Score=35.14 Aligned_cols=33 Identities=9% Similarity=-0.137 Sum_probs=25.5
Q ss_pred CCccEEEEcCCc--hhhHHHHHHcCCccEEEecch
Q 011724 121 PEMNCLVTDTFF--VWSSMIAKKYNLVNISFWTEP 153 (478)
Q Consensus 121 ~~pD~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~ 153 (478)
..||+||+-.-. ..+..=|.++|||+|.+..+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 579988876533 566677999999999998654
No 174
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=78.91 E-value=20 Score=31.18 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=30.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVN 44 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 44 (478)
-|.+++.++.|-....+++|-+.+.+|++|.|+-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4778888899999999999999999999999944
No 175
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=77.90 E-value=20 Score=34.00 Aligned_cols=112 Identities=9% Similarity=-0.030 Sum_probs=60.7
Q ss_pred CEEEEEcCCCcc-CHHHHHHHHHHHHhC---CCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCC
Q 011724 10 PHAIAICYPLQG-HVIPFVNLALKLASS---GFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLP 85 (478)
Q Consensus 10 ~~il~~~~~~~G-H~~p~l~La~~L~~r---Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 85 (478)
||||+.- -.| |.--+.+|++.|.+. |++|+++.+...+.-.- . +......++...+.++.
T Consensus 1 M~ILlTN--DDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~g----h---------aiT~~~pl~~~~~~~~~- 64 (261)
T PRK13931 1 MRILITN--DDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVG----H---------CISYTHPMMIAELGPRR- 64 (261)
T ss_pred CeEEEEc--CCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCc----c---------cccCCCCeEEEEeCCCe-
Confidence 4555443 223 334466788888763 47999998887665553 1 11222356666554210
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCC-------------chhhHHHHHHcCCccEEEec
Q 011724 86 LNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTF-------------FVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~-------------~~~~~~~A~~lgiP~v~~~~ 151 (478)
..-......-.... +..++.. .+||+||+-.. +.++..-|..+|||.|.++.
T Consensus 65 --yav~GTPaDCV~la-------l~~~~~~-----~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 65 --FAAEGSPADCVLAA-------LYDVMKD-----APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred --EEEcCchHHHHHHH-------HHHhcCC-----CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 11123333333222 2223221 35899987432 14456667888999999974
No 176
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=76.95 E-value=16 Score=31.44 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=65.1
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcce
Q 011724 287 LYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGG 366 (478)
Q Consensus 287 Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~ 366 (478)
|-|-+||.. +....+++...|++.+..+-+.+.+-+ -.|+.+.+. +. -+.+-.+++
T Consensus 3 V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH-------R~p~~l~~~------------~~---~~~~~~~~v 58 (150)
T PF00731_consen 3 VAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH-------RTPERLLEF------------VK---EYEARGADV 58 (150)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT-------TSHHHHHHH------------HH---HTTTTTESE
T ss_pred EEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc-------CCHHHHHHH------------HH---HhccCCCEE
Confidence 555566664 566778888888888877666554331 122222211 00 011112233
Q ss_pred eeeccCch----hhHHHHhcCcceeccCcccchhHHHHHhhc-----------cc---CHHHHHHHHHHHhCCCChHHHH
Q 011724 367 FLTHCGWN----SIQESIWCSVPLLCFPLLTDQFTNRKLVKS-----------SI---TKEEVSEKINRLMSGKSSDELR 428 (478)
Q Consensus 367 ~ItHGG~~----s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~-----------~~---t~~~l~~~v~~ll~~~~~~~~r 428 (478)
||.=.|.. ++.-++ .-.|+|.+|....+.....-+-. .. +...-+-.--++|.-. +++.+
T Consensus 59 iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~-d~~l~ 136 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALK-DPELR 136 (150)
T ss_dssp EEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT--HHHH
T ss_pred EEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcC-CHHHH
Confidence 88877764 333333 37899999987765433332222 11 1222222223333211 78889
Q ss_pred HHHHHHHHHHHH
Q 011724 429 KNIKEVRKKLEN 440 (478)
Q Consensus 429 ~~a~~l~~~~~~ 440 (478)
++.+..++++++
T Consensus 137 ~kl~~~~~~~~~ 148 (150)
T PF00731_consen 137 EKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 988888888875
No 177
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=76.65 E-value=9.1 Score=42.60 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=68.3
Q ss_pred eccCh---HhhhhccCcceeee---ccCch-hhHHHHhcCcc---eeccC-cc--cchhHHHHHhhcccCHHHHHHHHHH
Q 011724 351 PWCSQ---IDVISHSAIGGFLT---HCGWN-SIQESIWCSVP---LLCFP-LL--TDQFTNRKLVKSSITKEEVSEKINR 417 (478)
Q Consensus 351 ~~ipq---~~vL~~~~v~~~It---HGG~~-s~~Eal~~GvP---~l~~P-~~--~DQ~~na~rv~~~~t~~~l~~~v~~ 417 (478)
+++|. .++++.+++ ||. .-|+| +..|++++|+| ++++. +. .++...++.++...+.++++++|.+
T Consensus 362 ~~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l~~~allVnP~D~~~lA~AI~~ 439 (797)
T PLN03063 362 CSVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSLGAGALLVNPWNITEVSSAIKE 439 (797)
T ss_pred CCCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhhhcCCeEEECCCCHHHHHHHHHH
Confidence 45554 457778888 774 44776 67799999999 44444 32 2332112233336789999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 011724 418 LMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQFLT 463 (478)
Q Consensus 418 ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~~~ 463 (478)
+|+-+ ..+-+++.+++.+..++ .+...-+++|++.+.+.+
T Consensus 440 aL~m~-~~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 440 ALNMS-DEERETRHRHNFQYVKT-----HSAQKWADDFMSELNDII 479 (797)
T ss_pred HHhCC-HHHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHh
Confidence 99721 24455566666666654 566777888888887654
No 178
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=76.30 E-value=23 Score=31.82 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=61.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh-hhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH-HQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLN 87 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 87 (478)
.-.|.+++..+.|-....+++|-+.+.+|++|.++---... ..-+ . .++...+++.+.....++...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE---~---------~~l~~l~~v~~~~~g~~~~~~ 89 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGE---R---------NLLEFGGGVEFHVMGTGFTWE 89 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCH---H---------HHHhcCCCcEEEECCCCCccc
Confidence 36889999999999999999999999999999998753322 0000 0 000111267877766543211
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCc
Q 011724 88 FDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFF 132 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~ 132 (478)
. .+... ........++...+.+.+ .++|+||.|...
T Consensus 90 ~---~~~~e----~~~~~~~~~~~a~~~l~~--~~ydlvVLDEi~ 125 (191)
T PRK05986 90 T---QDRER----DIAAAREGWEEAKRMLAD--ESYDLVVLDELT 125 (191)
T ss_pred C---CCcHH----HHHHHHHHHHHHHHHHhC--CCCCEEEEehhh
Confidence 1 11111 112233344444444443 679999999855
No 179
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=76.10 E-value=36 Score=29.68 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=22.2
Q ss_pred ceeeeccCch------hhHHHHhcCcceeccCc
Q 011724 365 GGFLTHCGWN------SIQESIWCSVPLLCFPL 391 (478)
Q Consensus 365 ~~~ItHGG~~------s~~Eal~~GvP~l~~P~ 391 (478)
+++++|+|-| .+.+|...++|||++.-
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3388888854 78999999999999963
No 180
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=75.49 E-value=5.6 Score=35.88 Aligned_cols=45 Identities=11% Similarity=-0.101 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
.+||++.-.|+.|=+.-...|+++|.++||+|.++.++.....+.
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhh
Confidence 478887776655544447999999999999999999998776654
No 181
>PRK12342 hypothetical protein; Provisional
Probab=74.82 E-value=38 Score=32.00 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=25.2
Q ss_pred CccEEEEcCCc-hh-----hHHHHHHcCCccEEEecc
Q 011724 122 EMNCLVTDTFF-VW-----SSMIAKKYNLVNISFWTE 152 (478)
Q Consensus 122 ~pD~vi~D~~~-~~-----~~~~A~~lgiP~v~~~~~ 152 (478)
+||+|++...+ .. +..+|+.+|+|++.....
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 49999997655 33 789999999999998643
No 182
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=74.19 E-value=4.1 Score=36.14 Aligned_cols=37 Identities=8% Similarity=-0.043 Sum_probs=26.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHH 50 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 50 (478)
|||.++..-+ ++- ..|+++..+|||+||-++-...+-
T Consensus 1 mKIaiIgAsG--~~G--s~i~~EA~~RGHeVTAivRn~~K~ 37 (211)
T COG2910 1 MKIAIIGASG--KAG--SRILKEALKRGHEVTAIVRNASKL 37 (211)
T ss_pred CeEEEEecCc--hhH--HHHHHHHHhCCCeeEEEEeChHhc
Confidence 6787776433 332 357889999999999999776443
No 183
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=73.99 E-value=4.8 Score=35.92 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
|+||++...++.|=+. ...+.+.|.++|++|.++.++.....+.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 5788888877766555 7899999999999999999999887765
No 184
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=73.70 E-value=30 Score=26.59 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 26 FVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 26 ~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
++.+|+.|++.|++| ++++.-...++
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~ 27 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLR 27 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHH
Confidence 468999999999998 35555567776
No 185
>PRK14098 glycogen synthase; Provisional
Probab=72.97 E-value=5.8 Score=41.48 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcC---C---CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 6 KKPKPHAIAICY---P---LQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 6 ~~~~~~il~~~~---~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
+.+||||++++. | +.|=-.-+-+|.++|+++||+|.++.+.-
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 466799999982 2 22344456678999999999999999843
No 186
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=72.81 E-value=1e+02 Score=30.44 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=58.3
Q ss_pred hhccCCCeEEeeccChHhh---hhccCcceeeeccCch-----hhHHHHhcCcceeccCcc---------cchhHHHHHh
Q 011724 340 KIKISGRGLIVPWCSQIDV---ISHSAIGGFLTHCGWN-----SIQESIWCSVPLLCFPLL---------TDQFTNRKLV 402 (478)
Q Consensus 340 ~~~~~~nv~v~~~ipq~~v---L~~~~v~~~ItHGG~~-----s~~Eal~~GvP~l~~P~~---------~DQ~~na~rv 402 (478)
.++++++|....-+|..++ |..+.+ =| |+=|| ++.|++++|.=+|+---. .|...++..
T Consensus 332 ~L~i~~~v~F~~N~Py~~lv~lL~~a~i--Gv-h~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFl- 407 (465)
T KOG1387|consen 332 ELKIPKHVQFEKNVPYEKLVELLGKATI--GV-HTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFL- 407 (465)
T ss_pred hcCCccceEEEecCCHHHHHHHhcccee--eh-hhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceee-
Confidence 4568899999988997654 444444 22 33333 788999999755432211 122222211
Q ss_pred hcccCHHHHHHHHHHHhCC-CC-hHHHHHHHHHHHHHHHH
Q 011724 403 KSSITKEEVSEKINRLMSG-KS-SDELRKNIKEVRKKLEN 440 (478)
Q Consensus 403 ~~~~t~~~l~~~v~~ll~~-~~-~~~~r~~a~~l~~~~~~ 440 (478)
..|.++-++++.+++.. .+ .-.+|++|++--++|-+
T Consensus 408 --a~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 408 --APTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred --cCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 56788888998888762 11 24477888877777755
No 187
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=72.44 E-value=6.4 Score=35.21 Aligned_cols=44 Identities=16% Similarity=0.088 Sum_probs=38.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLAS-SGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~ 53 (478)
|+||++.-.++.| .+=...|+++|.+ .||+|.++.++.....+.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 5789888878777 6668999999999 599999999999988886
No 188
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=72.28 E-value=14 Score=35.74 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=39.2
Q ss_pred hccCcceeeeccCchhhHHHHhc----CcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 360 SHSAIGGFLTHCGWNSIQESIWC----SVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 360 ~~~~v~~~ItHGG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
..+++ +|+-||-||+.+|+.. ++|++.+-. -++-. ..+.+++.+++.+++.|
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~--------G~lGFL~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH--------GRLGFITDIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC--------CCccccccCCHHHHHHHHHHHHcC
Confidence 35677 9999999999999774 678776653 22222 56789999999999974
No 189
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=71.70 E-value=27 Score=33.83 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=38.9
Q ss_pred CCeEEe-eccC---hHhhhhccCcceeeec--cCchhhHHHHhcCcceecc
Q 011724 345 GRGLIV-PWCS---QIDVISHSAIGGFLTH--CGWNSIQESIWCSVPLLCF 389 (478)
Q Consensus 345 ~nv~v~-~~ip---q~~vL~~~~v~~~ItH--GG~~s~~Eal~~GvP~l~~ 389 (478)
+++.+. +++| +..+|+.||++.|+|+ =|.|+++-.+..|+|+++-
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~ 256 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS 256 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe
Confidence 577765 8887 6789999999888886 4899999999999999875
No 190
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=71.46 E-value=15 Score=40.54 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=66.4
Q ss_pred EEeeccChHh---hhhccCcceeeec---cCc-hhhHHHHhcCcceeccCccc------chhHHHHHhhcccCHHHHHHH
Q 011724 348 LIVPWCSQID---VISHSAIGGFLTH---CGW-NSIQESIWCSVPLLCFPLLT------DQFTNRKLVKSSITKEEVSEK 414 (478)
Q Consensus 348 ~v~~~ipq~~---vL~~~~v~~~ItH---GG~-~s~~Eal~~GvP~l~~P~~~------DQ~~na~rv~~~~t~~~l~~~ 414 (478)
++.+++++.+ +++.+++ |+.- -|+ ....||+++|+|-...|+.. ++... ..+....+.++++++
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~~-~llv~P~d~~~la~a 421 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELAE-ALLVNPNDIEGIAAA 421 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHhCc-CeEECCCCHHHHHHH
Confidence 3447788654 6677787 7653 354 47899999977522222221 22221 222235688999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 011724 415 INRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQFLT 463 (478)
Q Consensus 415 v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~~~ 463 (478)
|.++|+.. ..+.+++.+++.+..++ .+...-++++++.+.+..
T Consensus 422 i~~~l~~~-~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 422 IKRALEMP-EEEQRERMQAMQERLRR-----YDVHKWASDFLDELREAA 464 (726)
T ss_pred HHHHHcCC-HHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHH
Confidence 99999722 23445555555555443 677788888888888754
No 191
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=71.44 E-value=13 Score=36.50 Aligned_cols=34 Identities=6% Similarity=-0.167 Sum_probs=25.5
Q ss_pred CCccEEEEcC-Cc-hhhHHHHHHcCCccEEEecchh
Q 011724 121 PEMNCLVTDT-FF-VWSSMIAKKYNLVNISFWTEPA 154 (478)
Q Consensus 121 ~~pD~vi~D~-~~-~~~~~~A~~lgiP~v~~~~~~~ 154 (478)
..||+||+-. .. ..+..=|.++|||+|.++-+..
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 4688877654 33 5677779999999999986654
No 192
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=71.15 E-value=25 Score=33.19 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=30.8
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCch
Q 011724 13 IAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSI 48 (478)
Q Consensus 13 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 48 (478)
++..-|+.|...-..++|..+++.|++|.++..+..
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 444467889999999999999999999999988764
No 193
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=71.11 E-value=22 Score=33.05 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=24.9
Q ss_pred CCccEEE-EcCCc-hhhHHHHHHcCCccEEEecchh
Q 011724 121 PEMNCLV-TDTFF-VWSSMIAKKYNLVNISFWTEPA 154 (478)
Q Consensus 121 ~~pD~vi-~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 154 (478)
.-||+++ +|+.. --|..=|.++|||+|.++.+.+
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3488765 55544 5667779999999999986554
No 194
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=71.10 E-value=11 Score=35.15 Aligned_cols=98 Identities=9% Similarity=0.051 Sum_probs=54.8
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCC-CeEEeeccC---h
Q 011724 283 RGSVLYVSFGSYA---HASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISG-RGLIVPWCS---Q 355 (478)
Q Consensus 283 ~~~~Vyvs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-nv~v~~~ip---q 355 (478)
+++.|.+..|+.. ..+.+.+.++++.+.+.++++++..+.. +..+..-...... .+. .+.+.+-.+ .
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE----EQEKEIADQIAAG--LQNPVINLAGKTSLREL 177 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH----HHHHHHHHHHHTT--HTTTTEEETTTS-HHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch----HHHHHHHHHHHHh--cccceEeecCCCCHHHH
Confidence 4567888888765 4578889999999998887766554433 0000000011111 122 233333222 3
Q ss_pred HhhhhccCcceeeeccCchhhHHHHhcCcceecc
Q 011724 356 IDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCF 389 (478)
Q Consensus 356 ~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~ 389 (478)
..++.++++ ||+. ..|.++=|.+.|+|+|++
T Consensus 178 ~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 678889998 8886 668899999999999988
No 195
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=70.86 E-value=53 Score=28.56 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=63.2
Q ss_pred EEEcCCCccCHHHHHH-HHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCC----CC
Q 011724 13 IAICYPLQGHVIPFVN-LALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLP----LN 87 (478)
Q Consensus 13 l~~~~~~~GH~~p~l~-La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~ 87 (478)
+.+.+...+.+..++. +|++|+++|++|.=++.......-. .. .......++.+.. ++
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~---~~--------------~~m~l~dl~~G~~~~IsQ~ 64 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDG---GR--------------CDMDLRDLPSGRRIRISQD 64 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCC---Cc--------------cceEEEECCCCCEEEEeec
Confidence 4455666678888776 8999999999998877665222221 11 0334444432210 00
Q ss_pred CCC-----CCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCch---------hhHHHHHHcCCccEEEecch
Q 011724 88 FDR-----SLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFV---------WSSMIAKKYNLVNISFWTEP 153 (478)
Q Consensus 88 ~~~-----~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~---------~~~~~A~~lgiP~v~~~~~~ 153 (478)
+.. ..+...+-.+ ...+.+.+. ..+|++|+.-|.- .....|-..|||+++..+..
T Consensus 65 LG~gs~gCrLD~~~La~A--------~~~l~~al~---~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 65 LGPGSRGCRLDPGALAEA--------SAALRRALA---EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred cCCCCcccccCHHHHHHH--------HHHHHHHHh---cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 000 1122222222 122334444 4699999997751 12344777799999987653
No 196
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=70.85 E-value=39 Score=29.40 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=21.3
Q ss_pred ceeeeccCc------hhhHHHHhcCcceeccCc
Q 011724 365 GGFLTHCGW------NSIQESIWCSVPLLCFPL 391 (478)
Q Consensus 365 ~~~ItHGG~------~s~~Eal~~GvP~l~~P~ 391 (478)
+++++|.|- +.+.+|...++|||++.-
T Consensus 61 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 337777774 478899999999999964
No 197
>PRK05920 aromatic acid decarboxylase; Validated
Probab=69.89 E-value=8.3 Score=35.08 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
+++||++.-.++.+= +=...+.+.|.+.||+|.++.+......+.
T Consensus 2 ~~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 2 KMKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 348888877665544 688899999999999999999999888775
No 198
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=68.96 E-value=5.6 Score=41.97 Aligned_cols=64 Identities=6% Similarity=0.107 Sum_probs=43.3
Q ss_pred hHhhhhccCcceeee---ccCc-hhhHHHHhcCcceeccCccc------chh----HHHHHhhc------ccCHHHHHHH
Q 011724 355 QIDVISHSAIGGFLT---HCGW-NSIQESIWCSVPLLCFPLLT------DQF----TNRKLVKS------SITKEEVSEK 414 (478)
Q Consensus 355 q~~vL~~~~v~~~It---HGG~-~s~~Eal~~GvP~l~~P~~~------DQ~----~na~rv~~------~~t~~~l~~~ 414 (478)
..+++..|++ ||. +=|+ -++.||+++|+|+|+....+ |.- ..+-.|.. .-+.++|+++
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~ 545 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQY 545 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHH
Confidence 6677888888 555 4565 48999999999999987731 111 12333322 3456788888
Q ss_pred HHHHhC
Q 011724 415 INRLMS 420 (478)
Q Consensus 415 v~~ll~ 420 (478)
+.+++.
T Consensus 546 m~~~~~ 551 (590)
T cd03793 546 MYEFCQ 551 (590)
T ss_pred HHHHhC
Confidence 888885
No 199
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=68.28 E-value=29 Score=32.86 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=25.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
|||+++. +.|. -..||+.|.++||+|+..+.....
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEccCCc
Confidence 5666654 3442 678999999999999987776644
No 200
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=66.12 E-value=51 Score=29.51 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=61.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh-----hhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCC
Q 011724 12 AIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH-----HQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPL 86 (478)
Q Consensus 12 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 86 (478)
|.+++..+.|-....+.+|-+-.-+|.+|.++---... .... .. -+..+.|+.+++++..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~---~~------------~~~~v~~~~~~~g~tw 95 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAAL---EK------------FGLGVEFHGMGEGFTW 95 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHH---Hh------------hccceeEEecCCceeC
Confidence 67788889999999999998888899999887642222 1111 11 0126888888876643
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCch
Q 011724 87 NFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFV 133 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~ 133 (478)
..... .. +. ..+...++...+.+.+ .++|+||.|.+.+
T Consensus 96 ~~~~~---~~--d~--~aa~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 96 ETQDR---EA--DI--AAAKAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred CCcCc---HH--HH--HHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 32111 11 11 3334445555555554 6799999998663
No 201
>PLN02470 acetolactate synthase
Probab=65.89 E-value=39 Score=36.22 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=22.7
Q ss_pred cceeeeccCch------hhHHHHhcCcceeccC
Q 011724 364 IGGFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 364 v~~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
++++++|.|-| .+.+|...++|||++.
T Consensus 77 ~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 77 VGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 45588998854 8899999999999995
No 202
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=65.41 E-value=18 Score=29.34 Aligned_cols=43 Identities=16% Similarity=0.336 Sum_probs=35.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQI 52 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 52 (478)
.|+++.+.+..-|-.-+.-||..|.++||+|.++......+.+
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 3789999999999999999999999999999999665543333
No 203
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=65.06 E-value=46 Score=32.11 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=37.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQI 52 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 52 (478)
.+|.+--.|+-|--.-.-.|.+.|.++||+|-++.-+....+.
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T 94 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT 94 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC
Confidence 5788888999999999999999999999999999877654433
No 204
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=64.64 E-value=19 Score=27.16 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFV 43 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 43 (478)
..-++++..+...|......+|+.|+++|+.|..+
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 46788888888899999999999999999998755
No 205
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=64.32 E-value=13 Score=28.99 Aligned_cols=84 Identities=18% Similarity=0.236 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHHHHHHHh
Q 011724 26 FVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRSLNHDQFMECLLHVF 105 (478)
Q Consensus 26 ~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (478)
++++|+.|++.|++ ++++..-...++ +. ++....+-.............
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~---~~---------------Gi~~~~v~~~~~~~~~~~g~~----------- 50 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLK---EH---------------GIEVTEVVNKIGEGESPDGRV----------- 50 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHH---HT---------------T--EEECCEEHSTG-GGTHCH-----------
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHH---Hc---------------CCCceeeeeecccCccCCchh-----------
Confidence 57899999999966 567777777777 66 666544432111000000011
Q ss_pred hHHHHHHHHHhhccCCCccEEEEcCCchhh---------HHHHHHcCCccE
Q 011724 106 SAHVDELVGNLIQLNPEMNCLVTDTFFVWS---------SMIAKKYNLVNI 147 (478)
Q Consensus 106 ~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~---------~~~A~~lgiP~v 147 (478)
.+.++++. .+.|+||........ ..+|...+||++
T Consensus 51 --~i~~~i~~-----~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 --QIMDLIKN-----GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp --HHHHHHHT-----TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred --HHHHHHHc-----CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 23334444 679999988744221 456777888875
No 206
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.11 E-value=1.4e+02 Score=28.65 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=42.6
Q ss_pred CeEEeeccChH---hhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHH--HHhhc------ccCHHHHHHH
Q 011724 346 RGLIVPWCSQI---DVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNR--KLVKS------SITKEEVSEK 414 (478)
Q Consensus 346 nv~v~~~ipq~---~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na--~rv~~------~~t~~~l~~~ 414 (478)
++.+..|+||+ .+|.-|++ =+- -|--|+.-|..+|.|.+ -+..-|.+|+ +.++. ..-+.+.+++
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~V-RGEDSFVRAq~agkPfl--WHIYpQdentHl~KLeaFldky~~~lp~~~a~a 313 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLV-RGEDSFVRAQLAGKPFL--WHIYPQDENTHLAKLEAFLDKYCPFLPPNTAKA 313 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--cee-ecchHHHHHHHcCCCcE--EEecCCccccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 45556999974 58888887 332 36779999999999985 3344455554 44544 2223344455
Q ss_pred HHHH
Q 011724 415 INRL 418 (478)
Q Consensus 415 v~~l 418 (478)
++.+
T Consensus 314 lrt~ 317 (370)
T COG4394 314 LRTF 317 (370)
T ss_pred HHHH
Confidence 5544
No 207
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=64.08 E-value=79 Score=29.91 Aligned_cols=31 Identities=6% Similarity=0.021 Sum_probs=25.1
Q ss_pred CccEEEEcCCc------hhhHHHHHHcCCccEEEecc
Q 011724 122 EMNCLVTDTFF------VWSSMIAKKYNLVNISFWTE 152 (478)
Q Consensus 122 ~pD~vi~D~~~------~~~~~~A~~lgiP~v~~~~~ 152 (478)
.||+|++...+ .-+..+|+.+|+|++++...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 49999997654 25689999999999998653
No 208
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=64.03 E-value=79 Score=28.64 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=76.6
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhcc
Q 011724 283 RGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHS 362 (478)
Q Consensus 283 ~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~ 362 (478)
.+.++.|..|.++ ...+..|.+.+..+.++-. . ....+.... ..+.+.......+..-+..+
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~---------~~~~l~~l~-~~~~i~~~~~~~~~~~l~~a 71 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E---------LTENLVKLV-EEGKIRWKQKEFEPSDIVDA 71 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C---------CCHHHHHHH-hCCCEEEEecCCChhhcCCc
Confidence 3568888877776 4455666667777665532 2 112222210 11345555555556667788
Q ss_pred CcceeeeccCchhhHHHHhc----CcceeccCcccchhHHHHHh-----hc-------------ccCHHHHHHHHHHHhC
Q 011724 363 AIGGFLTHCGWNSIQESIWC----SVPLLCFPLLTDQFTNRKLV-----KS-------------SITKEEVSEKINRLMS 420 (478)
Q Consensus 363 ~v~~~ItHGG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~rv-----~~-------------~~t~~~l~~~v~~ll~ 420 (478)
++ +|.--+...+.+.++. ++++- ..|.+..+.-+ .+ ..-+..|++.|.+++.
T Consensus 72 dl--ViaaT~d~elN~~i~~~a~~~~lvn----~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~ 145 (202)
T PRK06718 72 FL--VIAATNDPRVNEQVKEDLPENALFN----VITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALYD 145 (202)
T ss_pred eE--EEEcCCCHHHHHHHHHHHHhCCcEE----ECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHcc
Confidence 88 9998888777777653 34332 34555544321 11 2224667777777763
Q ss_pred CCChHHHHHHHHHHHHHHHHH
Q 011724 421 GKSSDELRKNIKEVRKKLENA 441 (478)
Q Consensus 421 ~~~~~~~r~~a~~l~~~~~~a 441 (478)
++...+-+.+.++++.+++.
T Consensus 146 -~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 146 -ESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred -hhHHHHHHHHHHHHHHHHHh
Confidence 22456677777777777764
No 209
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=63.34 E-value=31 Score=34.36 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=55.1
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCCh-hhhhhhccCCC-eE-Eeec---------
Q 011724 285 SVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPV-GFEEKIKISGR-GL-IVPW--------- 352 (478)
Q Consensus 285 ~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~~~~~~n-v~-v~~~--------- 352 (478)
.+++.+-||..+..+. .++++.|++.++.++|+...... +.+.+|. ++.-. ..+.. +. ...|
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~---e~~l~~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~ 76 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGI---EKTIIEKENIPYY-SISSGKLRRYFDLKNIKDPFLV 76 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCcc---ccccCcccCCcEE-EEeccCcCCCchHHHHHHHHHH
Confidence 3777788888876665 45677777789999998754411 1111221 11100 01100 00 0001
Q ss_pred ----cChHhhhh--ccCcceeeeccCchh---hHHHHhcCcceec
Q 011724 353 ----CSQIDVIS--HSAIGGFLTHCGWNS---IQESIWCSVPLLC 388 (478)
Q Consensus 353 ----ipq~~vL~--~~~v~~~ItHGG~~s---~~Eal~~GvP~l~ 388 (478)
.--..++. +|++ +|++||+=| +..|...|+|+++
T Consensus 77 ~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i 119 (352)
T PRK12446 77 MKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLL 119 (352)
T ss_pred HHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEE
Confidence 01112344 4667 999999986 8999999999976
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=63.24 E-value=12 Score=35.29 Aligned_cols=45 Identities=11% Similarity=0.261 Sum_probs=41.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
...++|+-.+|.|-..=..+||.+|.++|+.|+|++.+++...+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 468899999999988889999999999999999999999998887
No 211
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=63.13 E-value=14 Score=31.28 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=39.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQI 52 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 52 (478)
++.||++.+.+..||-....-+++.|+..|++|.........+.+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~ 55 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA 55 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH
Confidence 679999999999999999999999999999999988875554443
No 212
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=62.96 E-value=18 Score=32.73 Aligned_cols=46 Identities=11% Similarity=-0.010 Sum_probs=40.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
+..||++.+.++-.|-....-++..|..+|++|++.+.....+.+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v 128 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVV 128 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHH
Confidence 4479999999999999999999999999999999999877665543
No 213
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=62.71 E-value=1.1e+02 Score=27.02 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=30.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFV 43 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 43 (478)
--|.+++..+.|-..-.+.+|-+.+.+|++|.++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 4677888899999999999999999999999766
No 214
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=62.68 E-value=69 Score=25.61 Aligned_cols=85 Identities=18% Similarity=0.159 Sum_probs=54.0
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHHH
Q 011724 21 GHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRSLNHDQFMEC 100 (478)
Q Consensus 21 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (478)
++-.-++++++.|.+.|+++ ++++.-...++ .. ++.+..+.... .
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~---~~---------------gi~~~~v~~~~-~-------------- 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL--VATEGTAKYLQ---EA---------------GIPVEVVNKVS-E-------------- 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE--EEchHHHHHHH---Hc---------------CCeEEEEeecC-C--------------
Confidence 35567889999999999998 35666677777 56 55544432111 0
Q ss_pred HHHHhhHHHHHHHHHhhccCCCccEEEEcCC-------chhhHHHHHHcCCccEEE
Q 011724 101 LLHVFSAHVDELVGNLIQLNPEMNCLVTDTF-------FVWSSMIAKKYNLVNISF 149 (478)
Q Consensus 101 ~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~-------~~~~~~~A~~lgiP~v~~ 149 (478)
....+.++++. .++|+||.... .+.....|-..|||++.-
T Consensus 55 ----~~~~i~~~i~~-----~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 55 ----GRPNIVDLIKN-----GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred ----CchhHHHHHHc-----CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEec
Confidence 01112333333 57999998532 245567788899999853
No 215
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=62.53 E-value=35 Score=35.00 Aligned_cols=37 Identities=14% Similarity=-0.012 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
++||||++-.+++-| +||..|++.++...+++.+.+.
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 459999999998877 6899999988766666666544
No 216
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=62.33 E-value=79 Score=28.65 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASS--GFTITFVNTH 46 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~ 46 (478)
||||++++.+..+= +.+|.+.+.+. +++|.++.+.
T Consensus 1 m~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEec
Confidence 68999999766433 44666777765 4788876554
No 217
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=62.26 E-value=53 Score=28.34 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.5
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011724 16 CYPLQGHVIPFVNLALKLASSGFTITFV 43 (478)
Q Consensus 16 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 43 (478)
+.++-|-..-.+.|++.|+++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3556788899999999999999999886
No 218
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=61.69 E-value=16 Score=30.10 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=36.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQI 52 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 52 (478)
||++.+.++-.|..-..-++..|...|++|++.......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 688999999999999999999999999999999986554443
No 219
>CHL00067 rps2 ribosomal protein S2
Probab=61.31 E-value=31 Score=32.02 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=26.0
Q ss_pred CCccEEEEcCCc--hhhHHHHHHcCCccEEEecchhH
Q 011724 121 PEMNCLVTDTFF--VWSSMIAKKYNLVNISFWTEPAL 155 (478)
Q Consensus 121 ~~pD~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~ 155 (478)
..||+||+-.-. ..+..=|.++|||+|.++.+...
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 468887775534 45777799999999999866543
No 220
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=60.39 E-value=20 Score=32.54 Aligned_cols=44 Identities=16% Similarity=0.054 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQI 52 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 52 (478)
..||++.+.++-.|-....-++..|.++|++|++.+.....+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 57999999999999999999999999999999998876544443
No 221
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=60.10 E-value=24 Score=31.54 Aligned_cols=95 Identities=14% Similarity=0.073 Sum_probs=48.1
Q ss_pred EcCCCccCHHHHHHHHHHHHhC--CCeEEEEeC-CchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCCC
Q 011724 15 ICYPLQGHVIPFVNLALKLASS--GFTITFVNT-HSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRS 91 (478)
Q Consensus 15 ~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 91 (478)
+=..+.|-++...+|+++|.++ |+.|.+-++ +...+.+.+.... .+...-+|-..
T Consensus 26 iHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~---------------~v~~~~~P~D~------- 83 (186)
T PF04413_consen 26 IHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD---------------RVDVQYLPLDF------- 83 (186)
T ss_dssp EE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG---------------G-SEEE---SS-------
T ss_pred EEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC---------------CeEEEEeCccC-------
Confidence 3345679999999999999986 899888876 4444555411111 22222243221
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhh--HHHHHHcCCccEEEe
Q 011724 92 LNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWS--SMIAKKYNLVNISFW 150 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~--~~~A~~lgiP~v~~~ 150 (478)
... ++.+++.++ ||++|.-....|. ...|++.|||.+.+.
T Consensus 84 ---~~~-----------~~rfl~~~~-----P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 84 ---PWA-----------VRRFLDHWR-----PDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ---HHH-----------HHHHHHHH-------SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ---HHH-----------HHHHHHHhC-----CCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 122 334556654 8998888767554 455778899999985
No 222
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=60.06 E-value=60 Score=28.74 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=25.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCe--EEEEeCCchh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFT--ITFVNTHSIH 49 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~--Vt~~~~~~~~ 49 (478)
|||+|+..+.. ..+..+.++|.++++. |..+.+....
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~ 39 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDK 39 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTT
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccc
Confidence 78988865544 4566778899999997 5555544433
No 223
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=59.83 E-value=96 Score=26.36 Aligned_cols=27 Identities=22% Similarity=0.237 Sum_probs=21.7
Q ss_pred eeeeccCc------hhhHHHHhcCcceeccCcc
Q 011724 366 GFLTHCGW------NSIQESIWCSVPLLCFPLL 392 (478)
Q Consensus 366 ~~ItHGG~------~s~~Eal~~GvP~l~~P~~ 392 (478)
++++|+|- +.+.+|...++|+|++.-.
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~ 94 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQ 94 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 38888664 4788999999999999653
No 224
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=59.70 E-value=21 Score=33.07 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=35.9
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 11 HAIAIC-YPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
-|.|+. -||-|-..-.+.||.+|+++|-.|+++=.+.+++..+
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~ 46 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAK 46 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHH
Confidence 344444 5688999999999999999999999999988886664
No 225
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=59.48 E-value=8.5 Score=38.61 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=37.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
=||+---|+.|--.=++.++..|+++| .|.+++.++...+++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 466667889999999999999999999 999999999988886
No 226
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=59.18 E-value=55 Score=32.26 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=52.8
Q ss_pred CCeEEe-eccC---hHhhhhccCcceeeec--cCchhhHHHHhcCcceeccCcc-cchhHHHHHhh-----cccCHHHHH
Q 011724 345 GRGLIV-PWCS---QIDVISHSAIGGFLTH--CGWNSIQESIWCSVPLLCFPLL-TDQFTNRKLVK-----SSITKEEVS 412 (478)
Q Consensus 345 ~nv~v~-~~ip---q~~vL~~~~v~~~ItH--GG~~s~~Eal~~GvP~l~~P~~-~DQ~~na~rv~-----~~~t~~~l~ 412 (478)
+++.+. +++| +..+|..|+++.|.+. =|.|+++-.|+.|+|+++---- .=|......+- +.++...|.
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ 324 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVR 324 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHH
Confidence 477654 7888 6789999999888775 5899999999999999764321 11111111110 177888888
Q ss_pred HHHHHHhC
Q 011724 413 EKINRLMS 420 (478)
Q Consensus 413 ~~v~~ll~ 420 (478)
++=+++..
T Consensus 325 ea~rql~~ 332 (360)
T PF07429_consen 325 EAQRQLAN 332 (360)
T ss_pred HHHHHHhh
Confidence 88877765
No 227
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=59.16 E-value=35 Score=31.61 Aligned_cols=34 Identities=9% Similarity=-0.053 Sum_probs=25.2
Q ss_pred CCccEEEEcCCc--hhhHHHHHHcCCccEEEecchh
Q 011724 121 PEMNCLVTDTFF--VWSSMIAKKYNLVNISFWTEPA 154 (478)
Q Consensus 121 ~~pD~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~ 154 (478)
..||+||+-.-. ..+..=|.++|||+|.+..+..
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 468887765433 5567779999999999986554
No 228
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=58.94 E-value=77 Score=25.63 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHHHH
Q 011724 22 HVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRSLNHDQFMECL 101 (478)
Q Consensus 22 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (478)
+-.-++.+|+.|.+.|++| ++++.-.+.+. .. ++.+..+..... .....
T Consensus 11 dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~---~~---------------gi~~~~v~~~~~--~~~~~--------- 59 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKL--YATEGTADFLL---EN---------------GIPVTPVAWPSE--EPQND--------- 59 (116)
T ss_pred cchhHHHHHHHHHHCCCEE--EEccHHHHHHH---Hc---------------CCCceEeeeccC--CCCCC---------
Confidence 4456889999999999988 46667777776 55 444443321100 00000
Q ss_pred HHHhhHHHHHHHHHhhccCCCccEEEEcCC---------chhhHHHHHHcCCccEE
Q 011724 102 LHVFSAHVDELVGNLIQLNPEMNCLVTDTF---------FVWSSMIAKKYNLVNIS 148 (478)
Q Consensus 102 ~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~---------~~~~~~~A~~lgiP~v~ 148 (478)
.+.+.++++. .++|+||.-.. .+.....|-.+|||++.
T Consensus 60 ----~~~i~~~i~~-----~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 ----KPSLRELLAE-----GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred ----chhHHHHHHc-----CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 0223344444 57999998542 23456778899999974
No 229
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=58.39 E-value=17 Score=32.64 Aligned_cols=44 Identities=11% Similarity=-0.033 Sum_probs=35.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
+||++.-.++.|=+.-.+.+.++|.+.|++|+++.++.......
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~~~~ 44 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTTDT 44 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHHHHH
Confidence 46777777777777777799999999999999999988765443
No 230
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=57.85 E-value=79 Score=32.70 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=29.2
Q ss_pred CCEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011724 9 KPHAIAICYP-LQGHVIPFVNLALKLASSGFTITFVNT 45 (478)
Q Consensus 9 ~~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 45 (478)
|.+|++.... +-|-..-...|++.|+++|++|..+-+
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4456666444 458999999999999999999988865
No 231
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=57.47 E-value=79 Score=25.12 Aligned_cols=28 Identities=4% Similarity=-0.075 Sum_probs=20.3
Q ss_pred CCccEEEEcCCc---hhhHHHHHHcCCccEE
Q 011724 121 PEMNCLVTDTFF---VWSSMIAKKYNLVNIS 148 (478)
Q Consensus 121 ~~pD~vi~D~~~---~~~~~~A~~lgiP~v~ 148 (478)
.++|++|+.+-. .+..+..+..|||++.
T Consensus 61 ~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 61 NKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp TTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred cCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 469999999844 3556778888999853
No 232
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.45 E-value=21 Score=34.25 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=53.8
Q ss_pred EeeccChHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHHH--Hhhc--------ccCHHHHHHHHHH-
Q 011724 349 IVPWCSQIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRK--LVKS--------SITKEEVSEKINR- 417 (478)
Q Consensus 349 v~~~ipq~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~--rv~~--------~~t~~~l~~~v~~- 417 (478)
++.|-...++|.++++ .|--.|- -+-+++--|+|+|.+|-.+-|+.-.. |=.+ .-.+.+.+..+.+
T Consensus 299 ~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ 375 (412)
T COG4370 299 WLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQE 375 (412)
T ss_pred EEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHH
Confidence 3466667777777777 4433332 23346778999999999998865444 3333 2223444555544
Q ss_pred HhCCCChHHHHHHHH-HHHHHHHH
Q 011724 418 LMSGKSSDELRKNIK-EVRKKLEN 440 (478)
Q Consensus 418 ll~~~~~~~~r~~a~-~l~~~~~~ 440 (478)
+|. |+++.++++ .=++++-+
T Consensus 376 ll~---dp~r~~air~nGqrRiGq 396 (412)
T COG4370 376 LLG---DPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred Hhc---ChHHHHHHHhcchhhccC
Confidence 998 888888777 34445543
No 233
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.05 E-value=1.1e+02 Score=30.05 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=40.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 7 KPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 7 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
+++--|+|+-.-|.|-..-.--||..|.+.|+.|.++..+.|+.-..
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAi 183 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAI 183 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHH
Confidence 34566788888899999999999999999999999999999985543
No 234
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.04 E-value=12 Score=35.59 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=39.0
Q ss_pred ccCcceeeeccCchhhHHHHh------cCcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 361 HSAIGGFLTHCGWNSIQESIW------CSVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 361 ~~~v~~~ItHGG~~s~~Eal~------~GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
.+++ +|+-||-||++.|+. .++|++.+-.. ++-- ....+++.+.+.++++|
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------~lGFL~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------HLGFYTDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------CceecccCCHHHHHHHHHHHHcC
Confidence 3566 999999999999976 47888877652 2222 46788999999999974
No 235
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=56.30 E-value=37 Score=30.96 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
||+++++- .|++- .+||++|++.||+|++.+.....
T Consensus 1 m~~~~i~G---tGniG--~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 1 MMIIAIIG---TGNIG--SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred CcEEEEec---cChHH--HHHHHHHHhCCCeEEEecCCChh
Confidence 56666654 44443 57899999999999999776654
No 236
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=55.67 E-value=46 Score=28.81 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=56.6
Q ss_pred EEEEcCCCccCHHH----HHHHHHHHHh-CCCeEEEEeCC---chhhhhhhhcC-CCCCcchhccccCCCCCe-EEEEcC
Q 011724 12 AIAICYPLQGHVIP----FVNLALKLAS-SGFTITFVNTH---SIHHQITKAQS-NGDEDDIFAGARKAGLDI-RYATVS 81 (478)
Q Consensus 12 il~~~~~~~GH~~p----~l~La~~L~~-rGh~Vt~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i-~~~~~~ 81 (478)
|+++.--..|.+++ ++..|++|++ .|.+|+.++-. ...+.+++.+. . +. +.+.+.
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~---------------G~d~v~~~~ 66 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKY---------------GADKVYHID 66 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHST---------------TESEEEEEE
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhc---------------CCcEEEEec
Confidence 45554333455555 6788999988 47888777654 33444332223 4 32 223332
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCc---hhhHHHHHHcCCccEEEec
Q 011724 82 DGLPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFF---VWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~---~~~~~~A~~lgiP~v~~~~ 151 (478)
+..-.. .+...+. ..+.++++.. +||+|+.-... ..+..+|.++|.|++.-..
T Consensus 67 ~~~~~~----~~~~~~a--------~~l~~~~~~~-----~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 67 DPALAE----YDPEAYA--------DALAELIKEE-----GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp -GGGTT----C-HHHHH--------HHHHHHHHHH-----T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred Cccccc----cCHHHHH--------HHHHHHHHhc-----CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 111000 0111111 2233455553 59999998755 3567889999999998764
No 237
>PRK06849 hypothetical protein; Provisional
Probab=55.42 E-value=23 Score=35.66 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCch
Q 011724 7 KPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSI 48 (478)
Q Consensus 7 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 48 (478)
+++|+||+... ...-.+.+|+.|.+.||+|+++.....
T Consensus 2 ~~~~~VLI~G~----~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 2 NTKKTVLITGA----RAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCEEEEeCC----CcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 34689988852 223588999999999999999988753
No 238
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=55.01 E-value=31 Score=33.62 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
+|||+++-.++.| ..+|..|++.||+|+++.... .+.+.
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~ 43 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVR 43 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHH
Confidence 4899999877777 346788999999999999866 34454
No 239
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=54.81 E-value=15 Score=30.77 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=28.4
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 20 QGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 20 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
.-.+--.+-|+..|+++||+|++.+++.....++
T Consensus 10 Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 10 PVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp TTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 3455667889999999999999999999998887
No 240
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=54.00 E-value=49 Score=28.84 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=26.0
Q ss_pred HHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHH-----HHHc-CCccEEEec
Q 011724 103 HVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMI-----AKKY-NLVNISFWT 151 (478)
Q Consensus 103 ~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~-----A~~l-giP~v~~~~ 151 (478)
......+..++++ .+||+||+.........+ ...+ ++|++.+.+
T Consensus 75 ~~~~~~l~~~l~~-----~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 75 RLFARRLIRLLRE-----FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHhh-----cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3444455556555 569999999865333312 1223 478887765
No 241
>PRK06904 replicative DNA helicase; Validated
Probab=53.96 E-value=36 Score=35.42 Aligned_cols=43 Identities=21% Similarity=0.110 Sum_probs=35.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLAS-SGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~ 53 (478)
=|++..-|+.|-..-.+.+|...+. .|+.|.|++-+...+.+.
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~ 266 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIM 266 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 3566778999999999999998875 599999999988776654
No 242
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=53.84 E-value=2.1e+02 Score=29.86 Aligned_cols=106 Identities=11% Similarity=0.106 Sum_probs=68.5
Q ss_pred eEEeeccChHh---hhhccCcceeee---ccCchhhH-HHHhcCc----ceeccCcc--cchhHHHHHhhcccCHHHHHH
Q 011724 347 GLIVPWCSQID---VISHSAIGGFLT---HCGWNSIQ-ESIWCSV----PLLCFPLL--TDQFTNRKLVKSSITKEEVSE 413 (478)
Q Consensus 347 v~v~~~ipq~~---vL~~~~v~~~It---HGG~~s~~-Eal~~Gv----P~l~~P~~--~DQ~~na~rv~~~~t~~~l~~ 413 (478)
+++.+.+|+.+ ++.-+|+ ++. .-|+|-|. |.++++. |+|+--+. +.|.. .+.++.-.+.+++++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l~-~AllVNP~d~~~~A~ 440 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVELK-GALLTNPYDPVRMDE 440 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccccchhhcC-CCEEECCCCHHHHHH
Confidence 45558888655 5556777 553 45888655 9999988 55544443 23332 223333778999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011724 414 KINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQF 461 (478)
Q Consensus 414 ~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~ 461 (478)
+|.++|+-. ..+-++|.+++.+..+. .+...=.+.|++.+.+
T Consensus 441 ai~~AL~m~-~~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 441 TIYVALAMP-KAEQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 999999832 23345566666666654 5666678888887765
No 243
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=53.61 E-value=38 Score=32.05 Aligned_cols=34 Identities=9% Similarity=-0.071 Sum_probs=25.2
Q ss_pred CCccEEEEcC-Cc-hhhHHHHHHcCCccEEEecchh
Q 011724 121 PEMNCLVTDT-FF-VWSSMIAKKYNLVNISFWTEPA 154 (478)
Q Consensus 121 ~~pD~vi~D~-~~-~~~~~~A~~lgiP~v~~~~~~~ 154 (478)
..||+||+-. .. ..+..=|.++|||+|.++.+..
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 4688877654 33 5567779999999999986544
No 244
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.09 E-value=23 Score=37.41 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=30.4
Q ss_pred CCCEEEEEc-------CCCccCHHHHHH---HHHHHHhCCCeEEEEeCCc
Q 011724 8 PKPHAIAIC-------YPLQGHVIPFVN---LALKLASSGFTITFVNTHS 47 (478)
Q Consensus 8 ~~~~il~~~-------~~~~GH~~p~l~---La~~L~~rGh~Vt~~~~~~ 47 (478)
.|+++++.+ .+-.||+.+.++ +||.+..+||+|.|+|..+
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtD 52 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTD 52 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 346777765 234599998776 6888888999999999755
No 245
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=53.05 E-value=67 Score=29.71 Aligned_cols=100 Identities=9% Similarity=0.117 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCc-cCHHH---HHHHHHHHHhCCCeEEEEeCCch--hhhhhhhcCCCCCcchhccccCCCCCeE--EEE
Q 011724 8 PKPHAIAICYPLQ-GHVIP---FVNLALKLASSGFTITFVNTHSI--HHQITKAQSNGDEDDIFAGARKAGLDIR--YAT 79 (478)
Q Consensus 8 ~~~~il~~~~~~~-GH~~p---~l~La~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~ 79 (478)
+...|+|.+..+. .--.| +..|++.|.++|.+|.+++++.. .+.+.. +.. +.. +..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~-~~~---------------~~~~~~~~ 167 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQ-IAA---------------GLQNPVIN 167 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHH-HHT---------------THTTTTEE
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHH-HHH---------------hcccceEe
Confidence 3456777765544 22223 68999999999999998888887 333321 011 111 111
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecc
Q 011724 80 VSDGLPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTE 152 (478)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~ 152 (478)
+... .+ +.+++.-++ .-|++|+- ..+..-+|..+|+|+|.++..
T Consensus 168 ~~~~--------~~---------------l~e~~ali~----~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 168 LAGK--------TS---------------LRELAALIS----RADLVIGN--DTGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp ETTT--------S----------------HHHHHHHHH----TSSEEEEE--SSHHHHHHHHTT--EEEEESS
T ss_pred ecCC--------CC---------------HHHHHHHHh----cCCEEEec--CChHHHHHHHHhCCEEEEecC
Confidence 1100 01 222333333 37999987 456788999999999999754
No 246
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.97 E-value=16 Score=35.28 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred ChHhhhhccCcceeeeccCchhhHHHHhc----CcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCCC
Q 011724 354 SQIDVISHSAIGGFLTHCGWNSIQESIWC----SVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSGK 422 (478)
Q Consensus 354 pq~~vL~~~~v~~~ItHGG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~~ 422 (478)
+...+...+++ +|+-||-||++.|... ++|++.+ |.-++-. .++.+++.+++.+++.|+
T Consensus 57 ~~~~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGI--------N~G~lGFLt~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 57 GLDELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGI--------HAGHLGFLTDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred chhhcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEE--------eCCCcccCCcCCHHHHHHHHHHHHcCC
No 247
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=52.96 E-value=21 Score=35.24 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
||||+|+-.+..| ..+|..|+++||+|+++......+.+.
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~~~~~~~ 41 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRARIGDELR 41 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHHHHHHHH
Confidence 5899999877776 457889999999999998755444444
No 248
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=52.83 E-value=32 Score=31.52 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQI 52 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 52 (478)
+..||++.+.++-.|-....=++..|..+|++|++.+.....+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 457999999999999999999999999999999999986655444
No 249
>PRK14099 glycogen synthase; Provisional
Probab=52.57 E-value=22 Score=37.12 Aligned_cols=108 Identities=8% Similarity=0.116 Sum_probs=57.8
Q ss_pred cCCCe-EEeeccChH-hhh-hccCcceeee---ccCch-hhHHHHhcCcceeccCccc--chhHH-----------HHHh
Q 011724 343 ISGRG-LIVPWCSQI-DVI-SHSAIGGFLT---HCGWN-SIQESIWCSVPLLCFPLLT--DQFTN-----------RKLV 402 (478)
Q Consensus 343 ~~~nv-~v~~~ipq~-~vL-~~~~v~~~It---HGG~~-s~~Eal~~GvP~l~~P~~~--DQ~~n-----------a~rv 402 (478)
.++++ .+.+|-... .++ +.+|+ ||. +=|+| +.+||+++|+|.|+....+ |--.. ...+
T Consensus 348 ~~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l 425 (485)
T PRK14099 348 YPGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQ 425 (485)
T ss_pred CCCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEE
Confidence 35565 455773332 233 35777 774 45554 6789999998777654321 21111 1122
Q ss_pred hcccCHHHHHHHHHH---HhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011724 403 KSSITKEEVSEKINR---LMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQF 461 (478)
Q Consensus 403 ~~~~t~~~l~~~v~~---ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~ 461 (478)
...-+.++|++++.+ ++. +++.+++.. +..+ ...-|-...+++.++-+.+
T Consensus 426 ~~~~d~~~La~ai~~a~~l~~---d~~~~~~l~---~~~~---~~~fSw~~~a~~y~~lY~~ 478 (485)
T PRK14099 426 FSPVTADALAAALRKTAALFA---DPVAWRRLQ---RNGM---TTDVSWRNPAQHYAALYRS 478 (485)
T ss_pred eCCCCHHHHHHHHHHHHHHhc---CHHHHHHHH---HHhh---hhcCChHHHHHHHHHHHHH
Confidence 225678999999987 565 554433322 2221 1234545555665555544
No 250
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=52.55 E-value=14 Score=33.10 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=25.6
Q ss_pred CEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCCc
Q 011724 10 PHAIAICYPLQGHVIP------------FVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
+||++...|+.=.+.| -..||+++.++|++||++..+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 5666665555544443 4679999999999999999985
No 251
>PRK08506 replicative DNA helicase; Provisional
Probab=52.37 E-value=82 Score=32.81 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=36.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
=|++...|+.|-..-.+.+|...++.|+.|.|++.+...+.+.
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 4567778899999999999999988999999999988776654
No 252
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=52.09 E-value=1.2e+02 Score=30.56 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCC-chhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSG-FTITFVNTH-SIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~-~~~~~~~ 53 (478)
||+|+++-.+..|+ .+|+.|+++| ++|++++-. ....++.
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~ 42 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIA 42 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 68999988766665 5789999999 999999976 5556664
No 253
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=51.79 E-value=11 Score=32.61 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=27.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
||.++-.+.+|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 577777777775 78999999999999999985
No 254
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.55 E-value=17 Score=35.35 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=40.1
Q ss_pred hccCcceeeeccCchhhHHHHhc----CcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 360 SHSAIGGFLTHCGWNSIQESIWC----SVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 360 ~~~~v~~~ItHGG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
..+++ +|+=||-||++.|... ++|++.+-. -++-. .++.+++.+++.++++|
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~--------G~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT--------GHLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------CCCcccccCCHHHHHHHHHHHHcC
Confidence 34566 9999999999999764 788888744 23333 56789999999999974
No 255
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=50.90 E-value=42 Score=27.16 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEee-------ccChHhhhh---ccCccee
Q 011724 298 SKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVP-------WCSQIDVIS---HSAIGGF 367 (478)
Q Consensus 298 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~-------~ipq~~vL~---~~~v~~~ 367 (478)
+.+.-.+++.++++.|++.+.+..... .....+ . ..+..+..+ |+....|+. ...+ .
T Consensus 10 rGeia~r~~ra~r~~Gi~tv~v~s~~d-------~~s~~~-~---~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~ 76 (110)
T PF00289_consen 10 RGEIAVRIIRALRELGIETVAVNSNPD-------TVSTHV-D---MADEAYFEPPGPSPESYLNIEAIIDIARKEGA--D 76 (110)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEEEGGG-------TTGHHH-H---HSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--S
T ss_pred CCHHHHHHHHHHHHhCCcceeccCchh-------cccccc-c---ccccceecCcchhhhhhccHHHHhhHhhhhcC--c
Confidence 445568899999999999999887551 111111 1 445555444 566544443 3344 8
Q ss_pred eeccCchhhHHH
Q 011724 368 LTHCGWNSIQES 379 (478)
Q Consensus 368 ItHGG~~s~~Ea 379 (478)
..|+|+|-+.|.
T Consensus 77 ~i~pGyg~lse~ 88 (110)
T PF00289_consen 77 AIHPGYGFLSEN 88 (110)
T ss_dssp EEESTSSTTTTH
T ss_pred ccccccchhHHH
Confidence 999999987776
No 256
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=50.88 E-value=1e+02 Score=24.78 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 22 HVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 22 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
+=.-++.+|+.|.+.|+++ ++++.-...++
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~ 39 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLA 39 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHH
Confidence 4456889999999999998 46666677777
No 257
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=50.81 E-value=8.4 Score=35.16 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=27.7
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCc-hhhhhh
Q 011724 19 LQGHVIPFVNLALKLASSGFTITFVNTHS-IHHQIT 53 (478)
Q Consensus 19 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~~~ 53 (478)
+..|+...+.++..++.+|=.|.|+++.. +.+.++
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve 125 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVE 125 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHH
Confidence 45788888899999999999999999865 445554
No 258
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=50.78 E-value=37 Score=28.60 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=37.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQI 52 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 52 (478)
.+|++.+..+.+|-.----++..|...|++|.........+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 5899999999999999999999999999999999987665444
No 259
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=50.61 E-value=1.1e+02 Score=32.62 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=21.4
Q ss_pred ceeeeccCch------hhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
+++++|.|-| ++.||-..++|||++-
T Consensus 78 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 78 AVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred eEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3388887754 8999999999999984
No 260
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=50.27 E-value=22 Score=31.74 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=24.5
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEe
Q 011724 19 LQGHVIPFVNLALKLASSGFTITFVN 44 (478)
Q Consensus 19 ~~GH~~p~l~La~~L~~rGh~Vt~~~ 44 (478)
..|+-.....|++.|.++||+|++++
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999998
No 261
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=50.06 E-value=28 Score=33.62 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=34.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
|||+++--||-|-..-.+.||..|+++|++|.++=.+.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 67999999999999999999999999999998886544
No 262
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=49.86 E-value=1.2e+02 Score=26.31 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceee---eccC
Q 011724 296 HASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFL---THCG 372 (478)
Q Consensus 296 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~I---tHGG 372 (478)
+..++.+.++++..++.+..++++..+. ...||.-.... .. .|-+++=+ .-+|
T Consensus 36 HRtp~~~~~~~~~a~~~g~~viIa~AG~------aa~Lpgvva~~--t~----------------~PVIgvP~~~~~l~G 91 (156)
T TIGR01162 36 HRTPELMLEYAKEAEERGIKVIIAGAGG------AAHLPGMVAAL--TP----------------LPVIGVPVPSKALSG 91 (156)
T ss_pred ccCHHHHHHHHHHHHHCCCeEEEEeCCc------cchhHHHHHhc--cC----------------CCEEEecCCccCCCC
Confidence 4566777777777777777766665444 11233222111 11 11111111 2357
Q ss_pred chhhHHHHh--cCcceeccCcccchhHHHHHhhcccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 011724 373 WNSIQESIW--CSVPLLCFPLLTDQFTNRKLVKSSITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENA 441 (478)
Q Consensus 373 ~~s~~Eal~--~GvP~l~~P~~~DQ~~na~rv~~~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a 441 (478)
..++...+. .|+|+-.+ ..|.-.||+.+.- ++|.-. |++.+++.+..++.+++.
T Consensus 92 ~daLlS~vqmP~gvpvatv--~I~~~~nAa~~Aa------------qIl~~~-d~~l~~kl~~~r~~~~~~ 147 (156)
T TIGR01162 92 LDSLLSIVQMPSGVPVATV--AIGNAGNAALLAA------------QILGIK-DPELAEKLKEYRENQKEE 147 (156)
T ss_pred HHHHHHHhcCCCCCeeEEE--EcCChhHHHHHHH------------HHHcCC-CHHHHHHHHHHHHHHHHH
Confidence 777777777 68884333 3445667766332 222111 566666666666666553
No 263
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=49.84 E-value=22 Score=31.64 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=32.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
||++...++.|-+. ...|++.|+++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 35555555555444 4789999999999999999999988875
No 264
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=49.64 E-value=39 Score=29.83 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=51.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCch-hhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSI-HHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNF 88 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 88 (478)
-.|-+++..+.|-....+.+|-+-+-+|.+|.++---.. ...-+ . .++..-+++.+.....++....
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE---~---------~~l~~l~~~~~~~~g~~f~~~~ 71 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGE---L---------KALKKLPNVEIERFGKGFVWRM 71 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HH---H---------HHHGGGT--EEEE--TT----G
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCH---H---------HHHHhCCeEEEEEcCCcccccC
Confidence 457889999999999999999888889999999976443 11110 0 0001112577777665433211
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCc
Q 011724 89 DRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFF 132 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~ 132 (478)
. ... .. ...+...++...+.+.. ..+|+||.|...
T Consensus 72 ~---~~~---~~-~~~~~~~~~~a~~~i~~--~~~dlvILDEi~ 106 (172)
T PF02572_consen 72 N---EEE---ED-RAAAREGLEEAKEAISS--GEYDLVILDEIN 106 (172)
T ss_dssp G---GHH---HH-HHHHHHHHHHHHHHTT---TT-SEEEEETHH
T ss_pred C---CcH---HH-HHHHHHHHHHHHHHHhC--CCCCEEEEcchH
Confidence 1 111 11 23344445555555543 679999999854
No 265
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=49.58 E-value=88 Score=31.95 Aligned_cols=27 Identities=11% Similarity=-0.030 Sum_probs=22.4
Q ss_pred CCccEEEEcCCchhhHHHHHHcCCccEEEe
Q 011724 121 PEMNCLVTDTFFVWSSMIAKKYNLVNISFW 150 (478)
Q Consensus 121 ~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 150 (478)
.+||++|... .+..+|+++|||++.+.
T Consensus 349 ~~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 4699999883 46778999999999874
No 266
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=49.17 E-value=1e+02 Score=31.60 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=36.7
Q ss_pred ceeeeccCch------hhHHHHhcCcceeccCc-------------ccchhHHHHHhhc---cc-----------CHHHH
Q 011724 365 GGFLTHCGWN------SIQESIWCSVPLLCFPL-------------LTDQFTNRKLVKS---SI-----------TKEEV 411 (478)
Q Consensus 365 ~~~ItHGG~~------s~~Eal~~GvP~l~~P~-------------~~DQ~~na~rv~~---~~-----------t~~~l 411 (478)
+++++|.|-| .+.+|.+.++|||++-- ..||....+-+.+ .+ -.+.|
T Consensus 65 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i 144 (432)
T TIGR00173 65 VAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTV 144 (432)
T ss_pred EEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHH
Confidence 3388888854 78899999999999921 2356555554444 11 12557
Q ss_pred HHHHHHHhC
Q 011724 412 SEKINRLMS 420 (478)
Q Consensus 412 ~~~v~~ll~ 420 (478)
.++++..++
T Consensus 145 ~~A~~~a~~ 153 (432)
T TIGR00173 145 DRAVAQAQG 153 (432)
T ss_pred HHHHHHhhC
Confidence 777777665
No 267
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.14 E-value=22 Score=34.41 Aligned_cols=54 Identities=19% Similarity=0.329 Sum_probs=40.8
Q ss_pred hhhccCcceeeeccCchhhHHHHh----cCcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 358 VISHSAIGGFLTHCGWNSIQESIW----CSVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 358 vL~~~~v~~~ItHGG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
+...+++ +|+=||-||++.|.. .++|++.+-.. ++-. .++.+++.+++.++++|
T Consensus 61 ~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------~lGFLt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 61 LDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------RLGFLATVSKEEIEETIDELLNG 120 (292)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------CCCcccccCHHHHHHHHHHHHcC
Confidence 3345677 999999999999977 37788776542 2333 56789999999999974
No 268
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=49.09 E-value=62 Score=28.22 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=21.6
Q ss_pred eeeeccCch------hhHHHHhcCcceeccCc
Q 011724 366 GFLTHCGWN------SIQESIWCSVPLLCFPL 391 (478)
Q Consensus 366 ~~ItHGG~~------s~~Eal~~GvP~l~~P~ 391 (478)
++++|+|-| .+.||...++|||++.-
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 388888854 77899999999999954
No 269
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=48.32 E-value=1.5e+02 Score=30.41 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=26.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
.|+.++..++. ..++++.|.+-|-+|..+++..
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~ 318 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAI 318 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCC
Confidence 47777776655 7889999999999999887663
No 270
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.15 E-value=21 Score=34.51 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=40.5
Q ss_pred hhccCcceeeeccCchhhHHHHh----cCcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 359 ISHSAIGGFLTHCGWNSIQESIW----CSVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 359 L~~~~v~~~ItHGG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
...+++ +|+=||-||++.|.. .++|++.+-. -++-- .++.+++.+++.++++|
T Consensus 66 ~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G~lGFL~~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 66 GQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQ--------GHLGFLTQIPREYMTDKLLPVLEG 124 (296)
T ss_pred CcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEec--------CCCeEeeccCHHHHHHHHHHHHcC
Confidence 345677 999999999999965 3788887754 23333 57789999999999974
No 271
>PLN02939 transferase, transferring glycosyl groups
Probab=48.08 E-value=35 Score=38.47 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=30.7
Q ss_pred CCCCEEEEEc---CCC--ccCHHH-HHHHHHHHHhCCCeEEEEeCCc
Q 011724 7 KPKPHAIAIC---YPL--QGHVIP-FVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 7 ~~~~~il~~~---~~~--~GH~~p-~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
.+.|||++++ .|. .|-+-- .-+|.++|++.||+|.++++..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4569999998 232 244444 4459999999999999999854
No 272
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=48.05 E-value=1.3e+02 Score=30.27 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=28.2
Q ss_pred CCCCEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 7 KPKPHAIAIC-YPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 7 ~~~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
+.+++|+++- .|..|. .+|..|.++||+|+++....
T Consensus 96 ~~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred cccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCCc
Confidence 3558899886 666664 58899999999999998643
No 273
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=47.65 E-value=26 Score=31.08 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
||++...++.| ..-...+.+.|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 66666655544 4556699999999999999999998877765
No 274
>PRK08006 replicative DNA helicase; Provisional
Probab=47.23 E-value=1e+02 Score=32.00 Aligned_cols=43 Identities=19% Similarity=0.104 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLAS-SGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~ 53 (478)
=|++..-|+.|-..-.+.+|...+. .|+.|.|++-+...+.+.
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~ 269 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIM 269 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 3566778999999999999999874 699999999888776654
No 275
>PLN02929 NADH kinase
Probab=47.12 E-value=21 Score=34.50 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=41.7
Q ss_pred hccCcceeeeccCchhhHHHHh---cCcceeccCccc------chhHHHH----Hhhc--ccCHHHHHHHHHHHhCC
Q 011724 360 SHSAIGGFLTHCGWNSIQESIW---CSVPLLCFPLLT------DQFTNRK----LVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 360 ~~~~v~~~ItHGG~~s~~Eal~---~GvP~l~~P~~~------DQ~~na~----rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
..+++ +|+-||-||++.|.. .++|++.+=... .+..|.. ++-. .++.+++.+.|.+++.|
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcC
Confidence 34566 999999999999854 468988875531 1122222 2222 67789999999999974
No 276
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=47.10 E-value=22 Score=36.86 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=39.5
Q ss_pred hccCcceeeeccCchhhHHHHhc----CcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 360 SHSAIGGFLTHCGWNSIQESIWC----SVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 360 ~~~~v~~~ItHGG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
..+++ +|+=||-||++.|... ++|++.+ |.-++-. .++.+++.++|.+++.|
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G~LGFLt~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------SMGSLGFMTPFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------eCCCcceecccCHHHHHHHHHHHHcC
Confidence 45666 9999999999999764 5677765 3333333 57889999999999974
No 277
>PRK06988 putative formyltransferase; Provisional
Probab=46.66 E-value=1.5e+02 Score=28.85 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 46 (478)
||||+|+..+.. .+...+.|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHNV-----GVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcHH-----HHHHHHHHHhCCCCEEEEEcC
Confidence 589999865543 345566777889998887775
No 278
>PRK10867 signal recognition particle protein; Provisional
Probab=46.28 E-value=2e+02 Score=29.64 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=36.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCchhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASS-GFTITFVNTHSIHHQI 52 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~ 52 (478)
+.-|+++..+|.|-..-...||..|+++ |+.|.+++.+.++...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 4456666677889999999999999998 9999999999777543
No 279
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=46.26 E-value=1e+02 Score=28.10 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=26.2
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011724 12 AIAIC-YPLQGHVIPFVNLALKLASSGFTITFVN 44 (478)
Q Consensus 12 il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 44 (478)
|++.. -.+.|-..-.+.|++.|+++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 34443 4456999999999999999999997765
No 280
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=45.84 E-value=39 Score=32.57 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=29.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
|||+++-.+..| ..+|..|++.||+|+++..+...+.+.
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~ 39 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALR 39 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHH
Confidence 688888777666 457888999999999998844444454
No 281
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.62 E-value=16 Score=34.91 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=40.4
Q ss_pred hHhhhhccCcceeeeccCchhhHHHHh----cCcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhC
Q 011724 355 QIDVISHSAIGGFLTHCGWNSIQESIW----CSVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMS 420 (478)
Q Consensus 355 q~~vL~~~~v~~~ItHGG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~ 420 (478)
+..+...+++ +|+=||-||++.|.. .++|++.+-.. ++-. ..+.+++.+++.+++.
T Consensus 36 ~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------~lGFL~~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 36 LEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------NLGFLTDIDPKNAYEQLEACLE 97 (272)
T ss_pred hHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------CCcccccCCHHHHHHHHHHHHh
Confidence 3444455677 999999999998855 36788776432 2222 4678888999999887
No 282
>PRK07206 hypothetical protein; Provisional
Probab=45.08 E-value=1e+02 Score=31.26 Aligned_cols=34 Identities=12% Similarity=-0.050 Sum_probs=25.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
|++|+++-.... -..+++++++.|+++..++...
T Consensus 2 ~k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 2 MKKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CCeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 456777764322 3468999999999999888765
No 283
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=44.90 E-value=2.4e+02 Score=25.56 Aligned_cols=132 Identities=16% Similarity=0.156 Sum_probs=69.6
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccC
Q 011724 284 GSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSA 363 (478)
Q Consensus 284 ~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~ 363 (478)
+.++.|..|... ..-+..|.+.|.++.++-... .+.+.. +...+++....--.+...|..++
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~----------~~~l~~-l~~~~~i~~~~~~~~~~dl~~~~ 71 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL----------ESELTL-LAEQGGITWLARCFDADILEGAF 71 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC----------CHHHHH-HHHcCCEEEEeCCCCHHHhCCcE
Confidence 458888777765 344566667788776554321 112211 10123565542222344567777
Q ss_pred cceeeeccCchhhHH-----HHhcCcceeccCcccchhHHHH-----Hhhc-------------ccCHHHHHHHHHHHhC
Q 011724 364 IGGFLTHCGWNSIQE-----SIWCSVPLLCFPLLTDQFTNRK-----LVKS-------------SITKEEVSEKINRLMS 420 (478)
Q Consensus 364 v~~~ItHGG~~s~~E-----al~~GvP~l~~P~~~DQ~~na~-----rv~~-------------~~t~~~l~~~v~~ll~ 420 (478)
+ +|..-|...+.+ |-..|+|+-+ .|.+..+. .+.+ ..-+..|++.|.+++.
T Consensus 72 l--Vi~at~d~~ln~~i~~~a~~~~ilvn~----~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~ 145 (205)
T TIGR01470 72 L--VIAATDDEELNRRVAHAARARGVPVNV----VDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLP 145 (205)
T ss_pred E--EEECCCCHHHHHHHHHHHHHcCCEEEE----CCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcc
Confidence 7 888888775544 3456777722 23333322 1122 2224667777777773
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 011724 421 GKSSDELRKNIKEVRKKLEN 440 (478)
Q Consensus 421 ~~~~~~~r~~a~~l~~~~~~ 440 (478)
++...+-+...++++.+++
T Consensus 146 -~~~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 146 -PSLGDLATLAATWRDAVKK 164 (205)
T ss_pred -hhHHHHHHHHHHHHHHHHh
Confidence 1134455555556665554
No 284
>PRK11519 tyrosine kinase; Provisional
Probab=44.88 E-value=3.4e+02 Score=30.05 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=32.1
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCch
Q 011724 9 KPHAIAIC--YPLQGHVIPFVNLALKLASSGFTITFVNTHSI 48 (478)
Q Consensus 9 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 48 (478)
+.|+++++ .|+-|-..-...||..|++.|++|.++-.+--
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 45666665 46778999999999999999999999976543
No 285
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.85 E-value=1.3e+02 Score=30.36 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhh
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHH 50 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 50 (478)
++.-|.|+-.-+.|-..-+..||..++++|+.+.+++.+.|+.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 3455677777889999999999999999999999999988874
No 286
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=44.83 E-value=60 Score=34.66 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=21.7
Q ss_pred ceeeeccCch------hhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
+++++|.|-| .+.+|...++|||++-
T Consensus 80 gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 80 GVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred eEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3389998865 6889999999999884
No 287
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=44.76 E-value=1.9e+02 Score=28.29 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=23.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 46 (478)
|||+|+..+..+ +...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 688888655543 66678888899999877764
No 288
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=44.54 E-value=35 Score=33.23 Aligned_cols=42 Identities=24% Similarity=0.159 Sum_probs=33.5
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 011724 10 PHAIAIC-YPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQ 51 (478)
Q Consensus 10 ~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 51 (478)
||++|+. -||-|-..-..++|-.++++|++|.+++++.....
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccH
Confidence 5666666 66779999999999999999999999998875543
No 289
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=44.48 E-value=1.2e+02 Score=28.33 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=35.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCchhhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSG-FTITFVNTHSIHHQIT 53 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~~~~~ 53 (478)
|+|++.--++.|-..=.--|+.+|.++| ++|..+=.+.+...-.
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~ 45 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPE 45 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHH
Confidence 6899999999998776666677777765 9999999888776665
No 290
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=44.20 E-value=35 Score=32.25 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=32.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 46 (478)
|.|.++--+|-|...-...||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6788888888899999999999999999999887544
No 291
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=44.03 E-value=40 Score=34.17 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
+++||++...++. ..+-...|.+.|.+.|++|.++.++.....+.
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 4578888876665 45577889999999999999999999887775
No 292
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=44.00 E-value=32 Score=31.93 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 011724 27 VNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 27 l~La~~L~~rGh~Vt~~~~~ 46 (478)
.+||++|.++||+|+++...
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 56889999999999999754
No 293
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=43.84 E-value=27 Score=30.37 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNT 45 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 45 (478)
|+||.|+-.+..| .++|+.|.++||+|+.+-.
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 6899998877555 5789999999999988753
No 294
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=43.51 E-value=1.2e+02 Score=31.69 Aligned_cols=44 Identities=7% Similarity=-0.018 Sum_probs=37.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
.-+++.-.|+.|-..-.+.++...+++|..+.+++.++..+.+.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLL 307 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHH
Confidence 34677778899999999999999999999999999988877664
No 295
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=43.36 E-value=38 Score=32.04 Aligned_cols=36 Identities=14% Similarity=0.009 Sum_probs=31.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNT 45 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 45 (478)
|+|.++--||-|-..-...||..|+++|++|.++=-
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 678888778889999999999999999999998843
No 296
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=42.73 E-value=1.9e+02 Score=29.67 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=22.2
Q ss_pred CCccEEEEcCCchhhHHHHHHcCCccEEEe
Q 011724 121 PEMNCLVTDTFFVWSSMIAKKYNLVNISFW 150 (478)
Q Consensus 121 ~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 150 (478)
.+||++|.... ...+|+++|||++.+.
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 45999999863 5788999999998774
No 297
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=42.44 E-value=1.1e+02 Score=29.82 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=57.5
Q ss_pred CEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCC
Q 011724 10 PHAIAICYPLQG-----HVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGL 84 (478)
Q Consensus 10 ~~il~~~~~~~G-----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (478)
.-|++.|..+.| ...-+..|++.|.++|.+|.+++++.-.+..+..... . +-....+..
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~------------~--~~~~~~l~g-- 238 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL------------L--PGELRNLAG-- 238 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh------------C--CcccccCCC--
Confidence 345555544333 2335788999998889999999888766554410011 0 000000000
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEec
Q 011724 85 PLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 151 (478)
.. .+.++..-++ .-|++|+. ..+.+.+|..+|+|+|.++.
T Consensus 239 ------~~---------------sL~el~ali~----~a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 239 ------ET---------------SLDEAVDLIA----LAKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred ------CC---------------CHHHHHHHHH----hCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 00 1223333333 27999987 45678899999999999864
No 298
>PRK08840 replicative DNA helicase; Provisional
Probab=42.20 E-value=1.3e+02 Score=31.23 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=35.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLAS-SGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~ 53 (478)
=|++..-|+.|-..-.+.+|...+. .|+.|.|++-+...+.+.
T Consensus 219 LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~ 262 (464)
T PRK08840 219 LIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLM 262 (464)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHH
Confidence 3566778899999999999999874 599999999988776654
No 299
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=42.16 E-value=36 Score=31.04 Aligned_cols=45 Identities=22% Similarity=0.159 Sum_probs=34.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 7 KPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 7 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
.+.+||++...++.+ .+-...|.+.|. +||+|.++.++....++.
T Consensus 17 ~~~k~IllgVtGSIA-Ayk~~~lvr~L~-~g~~V~VvmT~~A~~FI~ 61 (209)
T PLN02496 17 PRKPRILLAASGSVA-AIKFGNLCHCFS-EWAEVRAVVTKASLHFID 61 (209)
T ss_pred CCCCEEEEEEeCHHH-HHHHHHHHHHhc-CCCeEEEEEChhHhhhcC
Confidence 445788777666443 445567999997 599999999999888886
No 300
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=41.81 E-value=1.9e+02 Score=29.70 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=35.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCchhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLA-SSGFTITFVNTHSIHHQ 51 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~ 51 (478)
+.-|+++..+|.|-..-...||..|. ++|..|.+++.+.++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 34456666778899999999999997 58999999999977654
No 301
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=41.67 E-value=1.4e+02 Score=29.51 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=57.2
Q ss_pred EEEEEcCCCcc---C--HHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCe--EEEEcCCC
Q 011724 11 HAIAICYPLQG---H--VIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDI--RYATVSDG 83 (478)
Q Consensus 11 ~il~~~~~~~G---H--~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~ 83 (478)
-|+|.|..++| + ..-+..|++.|.++|++|.+++++.-++..+..... ... .. +...+. +
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~----------~~~--~~~~~~~~l~-g 248 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAA----------LNT--EQQAWCRNLA-G 248 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHh----------ccc--ccccceeecc-C
Confidence 45666633222 2 334788999998889999999887766554410011 000 00 000000 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEec
Q 011724 84 LPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 151 (478)
...+.++...++ +-|++|+. ..+.+.+|..+|+|+|.++.
T Consensus 249 ----------------------~~sL~el~ali~----~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 249 ----------------------ETQLEQAVILIA----ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred ----------------------CCCHHHHHHHHH----hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 001223333333 37899987 45678899999999999974
No 302
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=41.58 E-value=41 Score=31.32 Aligned_cols=42 Identities=2% Similarity=-0.117 Sum_probs=32.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhh
Q 011724 12 AIAICYPLQGHVIPFVNLALKLASS--GFTITFVNTHSIHHQIT 53 (478)
Q Consensus 12 il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~ 53 (478)
|++.-.++.+=+.-.+.|++.|+++ |++|.++.+......+.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~ 45 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVR 45 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHh
Confidence 4444333333446899999999999 99999999999888886
No 303
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=41.44 E-value=38 Score=32.62 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=29.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC-Cchhhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNT-HSIHHQIT 53 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~-~~~~~~~~ 53 (478)
|||+++-.+..| ..+|..|++.||+|+++.. ....+.+.
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 40 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALN 40 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHH
Confidence 578888766665 5678889999999999997 34444454
No 304
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.96 E-value=36 Score=33.15 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=40.7
Q ss_pred hhccCcceeeeccCchhhHHHHhc----CcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 359 ISHSAIGGFLTHCGWNSIQESIWC----SVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 359 L~~~~v~~~ItHGG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
...+++ +|+=||-||++.|... ++|++.+... ++-. ....+++.+++.+++.|
T Consensus 70 ~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------~lGFL~~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 70 ADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------HVGFLAEAEAEDLDEAVERVVDR 128 (306)
T ss_pred ccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------CCceeccCCHHHHHHHHHHHHcC
Confidence 345677 9999999999999764 7888887652 2222 56789999999999974
No 305
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=40.84 E-value=38 Score=33.15 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
|++|.++-.++|| .+||..|+++||+|++.+...
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 5899999999998 579999999999999999754
No 306
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=40.47 E-value=49 Score=30.48 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=33.6
Q ss_pred CCEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 9 KPHAIAICYP--LQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 9 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
|.+|++++.+ +-|-..-.-+|+..|+++|+.|.++-.+-
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 5688888865 66999999999999999999999987765
No 307
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=40.39 E-value=40 Score=31.59 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 22 HVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 22 H~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
=-.-.-+|+++|++.||+|+++++.-
T Consensus 18 Lgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 18 LGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 33446679999999999999999866
No 308
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=40.37 E-value=42 Score=33.96 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=36.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
.+||++...++.|= .-...+++.|.+.|++|.++.++.....+.
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 47888877665554 558999999999999999999999888775
No 309
>PRK00784 cobyric acid synthase; Provisional
Probab=40.25 E-value=2.3e+02 Score=29.67 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=27.8
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011724 10 PHAIAICYP-LQGHVIPFVNLALKLASSGFTITFVNT 45 (478)
Q Consensus 10 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 45 (478)
..|++.... +-|-..-...|++.|+++|++|..+=+
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 345555443 459999999999999999999887644
No 310
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=40.06 E-value=2.3e+02 Score=26.66 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCch
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSI 48 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 48 (478)
|++|+++..-+-| ..||+.|.++|+.|++-+....
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~ 36 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRT 36 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCC
Confidence 5788887644445 4689999999998887665543
No 311
>PRK07004 replicative DNA helicase; Provisional
Probab=39.98 E-value=1.4e+02 Score=30.88 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=35.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLAS-SGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~ 53 (478)
=|++...|+.|-..-.+.+|..++. .|..|.|++-+...+.+.
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~ 258 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLA 258 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 3566778899999999999998874 699999999988776654
No 312
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=39.90 E-value=47 Score=29.39 Aligned_cols=41 Identities=10% Similarity=0.027 Sum_probs=31.0
Q ss_pred EEEEcCCCccCHHH-HHHHHHHHHh-CCCeEEEEeCCchhhhhh
Q 011724 12 AIAICYPLQGHVIP-FVNLALKLAS-SGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 12 il~~~~~~~GH~~p-~l~La~~L~~-rGh~Vt~~~~~~~~~~~~ 53 (478)
|+..-.++ ||... ...+.+.|++ +||+|.++.++.....++
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 33333333 77766 8889999985 699999999999887765
No 313
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=39.79 E-value=1.7e+02 Score=31.24 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.7
Q ss_pred ceeeeccCch------hhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
+++++|.|-| ++.+|...++|||++-
T Consensus 68 gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 68 GVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred EEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3489998854 8899999999999984
No 314
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=39.77 E-value=3.4e+02 Score=25.82 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 011724 409 EEVSEKINRLMSGKSSDELRKNIKEVRKKLEN 440 (478)
Q Consensus 409 ~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~ 440 (478)
+.|.+++.++--.. ...|++|++++.+++.+
T Consensus 115 ~~I~~~L~~~dP~~-~~~y~~N~~~~~~~L~~ 145 (276)
T cd01016 115 KAVAEVLSEKLPEH-KDEFQANSEAYVEELDS 145 (276)
T ss_pred HHHHHHHHHHCccc-HHHHHHHHHHHHHHHHH
Confidence 34444444443211 35699999999999876
No 315
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=39.73 E-value=1.5e+02 Score=31.49 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=21.7
Q ss_pred ceeeeccCc------hhhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGW------NSIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~------~s~~Eal~~GvP~l~~P 390 (478)
+++++|.|- ++++||...++|+|++-
T Consensus 66 gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 66 GVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 348888884 48899999999999993
No 316
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=39.68 E-value=62 Score=32.48 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=34.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 12 AIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 12 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
+++.-.|+.|--.=++.+|..+++.|..|.|++.++..+.+.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 456667888999999999999999999999999877666554
No 317
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.61 E-value=45 Score=32.30 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=39.8
Q ss_pred hccCcceeeeccCchhhHHHHh----cCcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 360 SHSAIGGFLTHCGWNSIQESIW----CSVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 360 ~~~~v~~~ItHGG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
..+++ +|+=||-||+.+++. .++|++.+... ++-. ..+.+++.++|.+++.|
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------~lGFl~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------RLGFLTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------cccccccCCHHHHHHHHHHHHcC
Confidence 34666 999999999999975 37788877762 2222 56789999999999974
No 318
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.57 E-value=32 Score=32.89 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=38.5
Q ss_pred ccCcceeeeccCchhhHHHHh-cCcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 361 HSAIGGFLTHCGWNSIQESIW-CSVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 361 ~~~v~~~ItHGG~~s~~Eal~-~GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
.+++ +|+=||-||+..|.. +.+|++.+-. -++-. ..+.+++.++++++++|
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~--------G~lGFL~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINM--------GGLGFLTEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEEC--------CCCccCcccCHHHHHHHHHHHHcC
Confidence 4566 999999999999987 4557665533 23332 57789999999999974
No 319
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=39.46 E-value=54 Score=31.68 Aligned_cols=39 Identities=15% Similarity=-0.027 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 46 (478)
||.+|.|+.-+|-|-..-...||..|++.|++|.++-.+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 445666666778899999999999999999999999443
No 320
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.41 E-value=36 Score=32.21 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=38.0
Q ss_pred ccCcceeeeccCchhhHHHHh-cCcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 361 HSAIGGFLTHCGWNSIQESIW-CSVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 361 ~~~v~~~ItHGG~~s~~Eal~-~GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
++++ +|+=||-||+..|+. +++|++.+-.. ++-- ..+.+++.+++.+++++
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G--------~lGfl~~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG--------RLGFLSSYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCC--------CCccccccCHHHHHHHHHHHHcC
Confidence 3466 999999999999977 57777766532 2222 56778999999999874
No 321
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=39.29 E-value=48 Score=34.43 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=37.1
Q ss_pred hhHHHHhcCcceeccCcccchhHHHHHhhc-------ccCHH---HHHHHHHHHhCCCChHHHHHHHHH
Q 011724 375 SIQESIWCSVPLLCFPLLTDQFTNRKLVKS-------SITKE---EVSEKINRLMSGKSSDELRKNIKE 433 (478)
Q Consensus 375 s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~-------~~t~~---~l~~~v~~ll~~~~~~~~r~~a~~ 433 (478)
++.||+++|+|+++.=. -.-+.-+++ ..+++ .+++++.++.. |++++.+..+
T Consensus 381 v~IEAMa~glPvvAt~~----GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~---~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNN----GGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRR---DPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEecC----CCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 78999999999987633 233333333 33555 69999999999 8888776644
No 322
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=39.23 E-value=3e+02 Score=26.41 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITK 54 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 54 (478)
+++|+++-.+..|. .+|+.|+++||.|.++..+...+..+.
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHH
Confidence 58899988887775 479999999999999999888877663
No 323
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=38.97 E-value=1.9e+02 Score=27.41 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 23 VIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 23 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
..-+..|++.|.++|++|.+++.+...+..+
T Consensus 139 ~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~ 169 (279)
T cd03789 139 AERFAALADRLLARGARVVLTGGPAERELAE 169 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEEechhhHHHHH
Confidence 3457889999999999999998877665554
No 324
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.91 E-value=2e+02 Score=29.48 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=24.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
++++++- .|. .- .++|+.|+++|++|+++....
T Consensus 6 k~v~iiG---~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVG---AGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEEC---CCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 6676663 333 33 399999999999999987754
No 325
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=38.78 E-value=65 Score=32.28 Aligned_cols=106 Identities=22% Similarity=0.182 Sum_probs=60.2
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCc
Q 011724 285 SVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAI 364 (478)
Q Consensus 285 ~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v 364 (478)
|-|.-..||+. .+|++-+...+.-+++.++++ .|-.+.... +.-++| |--+
T Consensus 195 P~I~aGqgTig-------~EIl~ql~~~~~AI~vpVGGG--------GLiaGIat~------vk~~~p--------~vkI 245 (457)
T KOG1250|consen 195 PDIWAGQGTIG-------LEILEQLKEPDGAIVVPVGGG--------GLIAGIATG------VKRVGP--------HVKI 245 (457)
T ss_pred chhhcCcchHH-------HHHHHhhcCCCCeEEEecCCc--------hhHHHHHHH------HHHhCC--------CCce
Confidence 34555556655 556666655555566666655 333333221 111111 2223
Q ss_pred ceeeeccCchhhHHHHhcCcceec--cCcccch------hHHHHHhhc-------ccCHHHHHHHHHHHhC
Q 011724 365 GGFLTHCGWNSIQESIWCSVPLLC--FPLLTDQ------FTNRKLVKS-------SITKEEVSEKINRLMS 420 (478)
Q Consensus 365 ~~~ItHGG~~s~~Eal~~GvP~l~--~P~~~DQ------~~na~rv~~-------~~t~~~l~~~v~~ll~ 420 (478)
-++-|+ |+.++..|+.+|.|+-. ++.++|- -.|+.++.+ .++.++|..+|.++++
T Consensus 246 IGVEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~e 315 (457)
T KOG1250|consen 246 IGVETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFE 315 (457)
T ss_pred EEEeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHH
Confidence 335555 77889999999988731 2223332 234444444 7889999999999998
No 326
>PRK06321 replicative DNA helicase; Provisional
Probab=38.75 E-value=2.1e+02 Score=29.84 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=35.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLAS-SGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~ 53 (478)
=|++..-|+.|-..-.+.+|...+. .|..|.|++-+...+.+.
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 3566778899999999999999874 699999999888776654
No 327
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=38.74 E-value=2e+02 Score=24.85 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=43.2
Q ss_pred ecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhccCcceeeec
Q 011724 291 FGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISHSAIGGFLTH 370 (478)
Q Consensus 291 ~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~~~v~~~ItH 370 (478)
+||.. +.+..++....|++.+..+-+.+.+-+ -.|+.+.+- +-+ .....+++||.=
T Consensus 5 mGS~S--D~~~~~~a~~~L~~~gi~~dv~V~SaH-------Rtp~~~~~~------------~~~---a~~~g~~viIa~ 60 (156)
T TIGR01162 5 MGSDS--DLPTMKKAADILEEFGIPYELRVVSAH-------RTPELMLEY------------AKE---AEERGIKVIIAG 60 (156)
T ss_pred ECcHh--hHHHHHHHHHHHHHcCCCeEEEEECcc-------cCHHHHHHH------------HHH---HHHCCCeEEEEe
Confidence 44443 566778888888888877655544331 233332211 000 111123449998
Q ss_pred cCchhhHHH---HhcCcceeccCccc
Q 011724 371 CGWNSIQES---IWCSVPLLCFPLLT 393 (478)
Q Consensus 371 GG~~s~~Ea---l~~GvP~l~~P~~~ 393 (478)
+|...-+-. -..-+|+|.+|...
T Consensus 61 AG~aa~Lpgvva~~t~~PVIgvP~~~ 86 (156)
T TIGR01162 61 AGGAAHLPGMVAALTPLPVIGVPVPS 86 (156)
T ss_pred CCccchhHHHHHhccCCCEEEecCCc
Confidence 887433222 33468999999853
No 328
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.69 E-value=40 Score=32.29 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=38.6
Q ss_pred ccCcceeeeccCchhhHHHHh---cCcceeccCcccchhHHHHHhhcccCHHHHHHHHHHHhCC
Q 011724 361 HSAIGGFLTHCGWNSIQESIW---CSVPLLCFPLLTDQFTNRKLVKSSITKEEVSEKINRLMSG 421 (478)
Q Consensus 361 ~~~v~~~ItHGG~~s~~Eal~---~GvP~l~~P~~~DQ~~na~rv~~~~t~~~l~~~v~~ll~~ 421 (478)
.+++ +|.-||-||+.+++. .++|+++++...--+. . .+..+++.+++.+++.|
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~lGFl--~----~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGTLGFL--T----EVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCCCCcc--c----cCCHHHHHHHHHHHHcC
Confidence 3566 999999999999984 3568888886321111 1 35688999999999974
No 329
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=38.54 E-value=80 Score=28.39 Aligned_cols=49 Identities=8% Similarity=-0.056 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhhccCCCccEEEEcCCc--hhhHHHHHHcCC-ccEEEecchh
Q 011724 106 SAHVDELVGNLIQLNPEMNCLVTDTFF--VWSSMIAKKYNL-VNISFWTEPA 154 (478)
Q Consensus 106 ~~~~~~ll~~l~~~~~~pD~vi~D~~~--~~~~~~A~~lgi-P~v~~~~~~~ 154 (478)
....+.+.+.+.+++.+||+||+=.-. ..|..++..||+ |..++.....
T Consensus 13 ~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y 64 (192)
T COG2236 13 HRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHY 64 (192)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEe
Confidence 334456667777667899999988744 789999999998 6666655443
No 330
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=38.50 E-value=82 Score=30.57 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
.|||.|+-.+..| .++|+.|.+.||+|+++....
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 4789999777666 478999999999999987654
No 331
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=38.24 E-value=3.5e+02 Score=25.48 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=32.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
=+++.-.|+.|-..-.+.+|...+++|..+.|++.+...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 356667889999999999999888899999999987544
No 332
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=38.19 E-value=53 Score=30.95 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 46 (478)
|..|.|+.-||-|-..-...||..|+++|++|.++=.+
T Consensus 1 m~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 34677777778899999999999999999999988544
No 333
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=38.14 E-value=48 Score=29.34 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=36.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
...+++.-.+|.|-..=..++|+++.++|+.|.|+..+...+.++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 367888888899888889999999999999999999988888876
No 334
>PRK11269 glyoxylate carboligase; Provisional
Probab=37.96 E-value=1.8e+02 Score=31.30 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=21.4
Q ss_pred ceeeeccC------chhhHHHHhcCcceeccC
Q 011724 365 GGFLTHCG------WNSIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG------~~s~~Eal~~GvP~l~~P 390 (478)
+++++|.| .+.+++|-..++|||++.
T Consensus 70 gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 70 GVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred EEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 33777766 679999999999999984
No 335
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=37.66 E-value=50 Score=29.94 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCch
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSI 48 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 48 (478)
+.||.+-..||-|-.+.|+.=|+.|+++|.+|.+..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 4799999999999999999999999999999998765543
No 336
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=37.57 E-value=2.8e+02 Score=24.65 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNT 45 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 45 (478)
+--|-+++..+.|-....+.+|-+-+-+|.+|.++--
T Consensus 21 ~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 21 EGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 3568888999999999999999888889999998874
No 337
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=37.57 E-value=1.2e+02 Score=31.00 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=21.9
Q ss_pred CCccEEEEcCCchhhHHHHHHcCCccEEEe
Q 011724 121 PEMNCLVTDTFFVWSSMIAKKYNLVNISFW 150 (478)
Q Consensus 121 ~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 150 (478)
.+||+||.+... ..+|+++|+|++.+.
T Consensus 370 ~~pdliig~~~~---~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNSHG---RYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECchh---HHHHHhcCCCEEEec
Confidence 469999999743 677888999998764
No 338
>PRK13695 putative NTPase; Provisional
Probab=37.37 E-value=2.7e+02 Score=24.08 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=29.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNT 45 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 45 (478)
|||++.-.++.|=-.-+..++..|...|+.+.-+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~ 36 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYT 36 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 789999889999888888899999888988653333
No 339
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.22 E-value=36 Score=32.87 Aligned_cols=59 Identities=7% Similarity=0.201 Sum_probs=0.0
Q ss_pred ChHhhhhccCcceeeeccCchhhHHHHhc----CcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCCC
Q 011724 354 SQIDVISHSAIGGFLTHCGWNSIQESIWC----SVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSGK 422 (478)
Q Consensus 354 pq~~vL~~~~v~~~ItHGG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~~ 422 (478)
++..+...+++ +|+=||-||++.|+.. ++|++.+ |.-++-- .++.+++.++++++++|+
T Consensus 56 ~~~~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgi--------n~G~lGFl~~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 56 TLAEIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGI--------NRGNLGFLTDLDPDNALQQLSDVLEGH 120 (292)
T ss_pred chhhcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEE--------ECCCCCcccccCHHHHHHHHHHHHcCC
No 340
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=37.20 E-value=4.5e+02 Score=26.44 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=57.4
Q ss_pred ccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCcc-----CCCChhhhhhhccCCC--eEEeeccCh---HhhhhccCc
Q 011724 295 AHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDET-----DFLPVGFEEKIKISGR--GLIVPWCSQ---IDVISHSAI 364 (478)
Q Consensus 295 ~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~n--v~v~~~ipq---~~vL~~~~v 364 (478)
.+....-+..+++++...+.++.+.+..+....... +.+..+-.. ..++ +.+.+|+|| +.+|-.||+
T Consensus 190 F~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~---~~g~l~l~~lPF~~Q~~yD~LLw~cD~ 266 (374)
T PF10093_consen 190 FCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSW---QRGNLTLHVLPFVPQDDYDRLLWACDF 266 (374)
T ss_pred EeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCcccc---ccCCeEEEECCCCCHHHHHHHHHhCcc
Confidence 334555577788888877777666665441110000 000001000 2344 445599997 569989987
Q ss_pred ceeeeccCchhhHHHHhcCcceeccCcccchhHHHHH
Q 011724 365 GGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKL 401 (478)
Q Consensus 365 ~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~r 401 (478)
=+=. |==|+.-|.++|+|+|= +..=|.++|-.
T Consensus 267 --NfVR-GEDSfVRAqwAgkPFvW--hIYpQ~d~aHl 298 (374)
T PF10093_consen 267 --NFVR-GEDSFVRAQWAGKPFVW--HIYPQEDDAHL 298 (374)
T ss_pred --ceEe-cchHHHHHHHhCCCceE--ecCcCchhhHH
Confidence 3333 56699999999999963 33445555543
No 341
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.97 E-value=2.9e+02 Score=24.17 Aligned_cols=96 Identities=8% Similarity=0.060 Sum_probs=57.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchh-hhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHHHHHHH
Q 011724 26 FVNLALKLASSGFTITFVNTHSIH-HQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRSLNHDQFMECLLHV 104 (478)
Q Consensus 26 ~l~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (478)
+..|.+...++|..|.++++..-. +.+...+. ..++++++.....+.-
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~------------~~yP~l~ivg~~~g~f------------------- 85 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR------------RRYPGLRIVGYHHGYF------------------- 85 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH------------HHCCCeEEEEecCCCC-------------------
Confidence 445666666789999999986533 32221111 2234777775443311
Q ss_pred hhHHHHHHHHHhhccCCCccEEEEcCCc----hhhHHHHHHcCCccEEEecchhH
Q 011724 105 FSAHVDELVGNLIQLNPEMNCLVTDTFF----VWSSMIAKKYNLVNISFWTEPAL 155 (478)
Q Consensus 105 ~~~~~~~ll~~l~~~~~~pD~vi~D~~~----~~~~~~A~~lgiP~v~~~~~~~~ 155 (478)
-....+++++.++. .+||+|++-..+ .+.....+.++.+ +.+..+.+.
T Consensus 86 ~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~ 137 (172)
T PF03808_consen 86 DEEEEEAIINRINA--SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAF 137 (172)
T ss_pred ChhhHHHHHHHHHH--cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchh
Confidence 11123345555554 679999999877 4677777778888 555555544
No 342
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=36.83 E-value=68 Score=25.94 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=34.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 12 AIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 12 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
++..+.++..|-....-++..|.++|++|.+.......+.+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~ 43 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIV 43 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHH
Confidence 567777888999999999999999999999998765554443
No 343
>PRK05414 urocanate hydratase; Provisional
Probab=36.46 E-value=4.1e+02 Score=27.77 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCC---CCCCCCHHHHH
Q 011724 22 HVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLN---FDRSLNHDQFM 98 (478)
Q Consensus 22 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~ 98 (478)
.+.=.++++++-++.|--+.+.......+..+...+++..+|.-|+..+....+. --+|.++.-. ..+..+...+.
T Consensus 218 ~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~-GY~P~G~t~ee~~~lr~~dp~~~~ 296 (556)
T PRK05414 218 DLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLN-GYLPVGWTLEEAAELRAEDPEEFV 296 (556)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccccCccc-ccCCCCCCHHHHHHHHHhCHHHHH
Confidence 3445667777777777777777776666666655577776777666544443443 2233333211 11234555666
Q ss_pred HHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCcc
Q 011724 99 ECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVN 146 (478)
Q Consensus 99 ~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~ 146 (478)
....+.+..+++.+++-.+ --.++.|.. =.-...|...|+.-
T Consensus 297 ~~~~~Sm~rhv~Am~~~~~-----~G~~~fDYG-N~~r~~a~~aG~~~ 338 (556)
T PRK05414 297 KAAKASMARHVEAMLAFQA-----RGAYVFDYG-NNIRQMAFDAGVEN 338 (556)
T ss_pred HHHHHHHHHHHHHHHHHHH-----CCCeeeecc-HHHHHHHHHCCccc
Confidence 7777777788887766543 456777753 34456677778773
No 344
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=36.44 E-value=1.7e+02 Score=31.31 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=29.1
Q ss_pred ceeeeccCc------hhhHHHHhcCcceeccCc-------------ccchhHHHHHhhc
Q 011724 365 GGFLTHCGW------NSIQESIWCSVPLLCFPL-------------LTDQFTNRKLVKS 404 (478)
Q Consensus 365 ~~~ItHGG~------~s~~Eal~~GvP~l~~P~-------------~~DQ~~na~rv~~ 404 (478)
+++++|.|- +++.+|.+.++|||++-- -.||...++.+.+
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk 123 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITK 123 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcc
Confidence 338888874 488999999999998831 1366666666555
No 345
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=36.18 E-value=1e+02 Score=26.93 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=21.0
Q ss_pred eeeeccCc------hhhHHHHhcCcceeccCcc
Q 011724 366 GFLTHCGW------NSIQESIWCSVPLLCFPLL 392 (478)
Q Consensus 366 ~~ItHGG~------~s~~Eal~~GvP~l~~P~~ 392 (478)
++++|.|- +++.+|...++|+|++.-.
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 38888874 4788999999999998754
No 346
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=36.05 E-value=62 Score=30.86 Aligned_cols=37 Identities=22% Similarity=0.097 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNT 45 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 45 (478)
|.+|.|+-=||-|-..-.+.||..|+++|++|.++=-
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~ 37 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGC 37 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEee
Confidence 4678888778889999999999999999999988843
No 347
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=36.05 E-value=93 Score=30.86 Aligned_cols=142 Identities=13% Similarity=0.211 Sum_probs=70.9
Q ss_pred hHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeec
Q 011724 273 ECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPW 352 (478)
Q Consensus 273 ~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ 352 (478)
+..+.-.+.+++.+||++-|=... .+.....+..|-++...++-+...+. ..|+-
T Consensus 120 dAl~iA~~nP~k~vVF~avGFETT-aP~~A~~i~~A~~~~~~Nfsvl~~hk--------l~PPa---------------- 174 (364)
T PRK15062 120 DALKIARENPDKEVVFFAIGFETT-APATAATLLQAKAEGLKNFSVLSSHK--------LVPPA---------------- 174 (364)
T ss_pred HHHHHHHHCCCCeEEEEecCchhc-cHHHHHHHHHHHHcCCCCEEEEEecc--------ccHHH----------------
Confidence 344444456677889988774442 23333445555555444544444333 22222
Q ss_pred cChHhhhhccC--cceeeeccCchhhHH-------HHhcCcceeccCcccchhHHHHHhhcccCHHHHHHHHHHHhCCCC
Q 011724 353 CSQIDVISHSA--IGGFLTHCGWNSIQE-------SIWCSVPLLCFPLLTDQFTNRKLVKSSITKEEVSEKINRLMSGKS 423 (478)
Q Consensus 353 ipq~~vL~~~~--v~~~ItHGG~~s~~E-------al~~GvP~l~~P~~~DQ~~na~rv~~~~t~~~l~~~v~~ll~~~~ 423 (478)
...+|..++ +.+||.=|=..++.- +-.+|+|+++.. +.+.+|..+|..++.
T Consensus 175 --~~~ll~~~~~~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVaG---------------FEp~DiL~ai~~lv~--- 234 (364)
T PRK15062 175 --MRALLEDPELRIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVAG---------------FEPLDILQSILMLVR--- 234 (364)
T ss_pred --HHHHHcCCCCCccEEEecCEeEEEeccchhHHHHHHcCCCeEEec---------------cCHHHHHHHHHHHHH---
Confidence 233333332 444554443322221 236788998876 467777777766664
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 011724 424 SDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQFLT 463 (478)
Q Consensus 424 ~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~~~ 463 (478)
++.+.-.++--..+.++.+.|. ..+.++++++.+-.
T Consensus 235 --q~~~g~~~v~N~Y~r~V~~eGN--~~A~~~i~~vFe~~ 270 (364)
T PRK15062 235 --QLEEGRAEVENQYTRVVKEEGN--LKAQELIAEVFEVR 270 (364)
T ss_pred --HHHCCCceEEEccceeeCcccC--HHHHHHHHHHcCcC
Confidence 1222222222333334444454 35667777766533
No 348
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.82 E-value=1.8e+02 Score=28.60 Aligned_cols=98 Identities=11% Similarity=0.165 Sum_probs=59.8
Q ss_pred CEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEE-cCCC
Q 011724 10 PHAIAICYPLQG-----HVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYAT-VSDG 83 (478)
Q Consensus 10 ~~il~~~~~~~G-----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~ 83 (478)
..|+|.|..+.| -..-+..|++.|.++|.+|.+++++.-.+.++..... +.... +.
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~----------------~~~~~~l~-- 237 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG----------------LPNAVILA-- 237 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh----------------cCCccccC--
Confidence 567777762332 3446888999999999999999988555554411111 11000 10
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecc
Q 011724 84 LPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTE 152 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~ 152 (478)
+ ..+ +.++...+. ..|++|+. ..+...+|..+|.|+|.+...
T Consensus 238 -~-----k~s---------------L~e~~~li~----~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 238 -G-----KTS---------------LEELAALIA----GADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred -C-----CCC---------------HHHHHHHHh----cCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 0 001 223333333 37888876 456788999999999999753
No 349
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=35.81 E-value=48 Score=32.27 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc-hhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS-IHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~~~ 53 (478)
||||+|+-.+..| ..+|..|+++||+|+++.... ..+.+.
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 41 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARDPEQAAEIN 41 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 5899998776666 457888999999999998743 334444
No 350
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=35.56 E-value=4.7e+02 Score=28.69 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=28.5
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011724 10 PHAIAICYP-LQGHVIPFVNLALKLASSGFTITFVNT 45 (478)
Q Consensus 10 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 45 (478)
..|++.+.. +.|-..-.+.|++.|.++|.+|-++=+
T Consensus 3 k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 3 RSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 356666444 458999999999999999999998753
No 351
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=35.56 E-value=72 Score=33.17 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=57.2
Q ss_pred ccCHHHHHHHHHHHHh--------CCCe----EEEEeC--CchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCC
Q 011724 20 QGHVIPFVNLALKLAS--------SGFT----ITFVNT--HSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLP 85 (478)
Q Consensus 20 ~GH~~p~l~La~~L~~--------rGh~----Vt~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 85 (478)
.|.+.-.+.+|++|.+ .|-+ |.++|- +.....-- .. +- .......+..+..+|-+..
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~---~q--~l----e~~~gt~~a~IlRvPF~~~ 366 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTC---NQ--RL----EKVSGTENARILRVPFGPE 366 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGG---TS--SE----EEETTESSEEEEEE-ESES
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCc---cc--cc----cccCCCCCcEEEEecCCCC
Confidence 3678888999999864 2544 555552 11111100 00 00 0011122566667774432
Q ss_pred CCCCC----CCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCc--hhhHHHHHHcCCccEEEecc
Q 011724 86 LNFDR----SLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFF--VWSSMIAKKYNLVNISFWTE 152 (478)
Q Consensus 86 ~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~--~~~~~~A~~lgiP~v~~~~~ 152 (478)
.+..+ .-++..+++.+... ..+.+++.+. ..||+|+..... ..|..+++++|||...+..+
T Consensus 367 ~gi~~kwisrf~lWPyLe~fa~d---~~~~i~~e~~---~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 367 KGILRKWISRFDLWPYLEEFADD---AEREILAELQ---GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp TEEE-S---GGG-GGGHHHHHHH---HHHHHHHHHT---S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred cchhhhccchhhchhhHHHHHHH---HHHHHHHHhC---CCCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 21101 12333445554432 2333444444 579999988633 67789999999999887543
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=35.51 E-value=3.5e+02 Score=26.51 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=34.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
.-.|+++-.+|-|-..=+..||..|+.+|++|.++..+.++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 34566777778899999999999999999999999987754
No 353
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=35.21 E-value=2.5e+02 Score=27.07 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 7 KPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 7 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
.++..|++.-.++.|-..-+..|+..|.++|+.|.++..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3445667776789999999999999999999999998877544
No 354
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=35.07 E-value=78 Score=31.65 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=27.4
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011724 5 HKKPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNT 45 (478)
Q Consensus 5 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 45 (478)
...+.|||++. ++.|.+- ..|++.|.++||+|+.+.-
T Consensus 17 ~~~~~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 17 WPSEKLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEe
Confidence 45566898876 4555543 4688999999999999874
No 355
>PRK09739 hypothetical protein; Provisional
Probab=35.06 E-value=90 Score=28.05 Aligned_cols=37 Identities=5% Similarity=0.094 Sum_probs=23.4
Q ss_pred CCCEEEEEc-CCCc-cCHHHHH-HHHHHHHhCCCeEEEEe
Q 011724 8 PKPHAIAIC-YPLQ-GHVIPFV-NLALKLASSGFTITFVN 44 (478)
Q Consensus 8 ~~~~il~~~-~~~~-GH~~p~l-~La~~L~~rGh~Vt~~~ 44 (478)
+||||+++. .|-. |...-+. .+++.|.+.||+|+++-
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 478888775 3433 3333333 36777777899998764
No 356
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=34.96 E-value=2.1e+02 Score=23.42 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=33.6
Q ss_pred hhhHhHhhcCCCCCceEEEEecccccC-CHHHHHHHHHHHhhCCCeEEEEE
Q 011724 271 ESECTQWLNTKPRGSVLYVSFGSYAHA-SKNDIVEIALGLLLSEVSFVWVL 320 (478)
Q Consensus 271 ~~~~~~~l~~~~~~~~Vyvs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~ 320 (478)
..+..+|+..+. +++|.|-.... .++.+..+++.+.+.+.--+.+-
T Consensus 33 ~~d~~~~l~~gE----lvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~ 79 (123)
T PF07905_consen 33 APDPSDWLRGGE----LVLTTGYALRDDDEEELREFIRELAEKGAAGLGIK 79 (123)
T ss_pred cCCHHHhCCCCe----EEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 456778887653 77877777655 56778899999999887665553
No 357
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=34.96 E-value=1.7e+02 Score=26.21 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCC
Q 011724 24 IPFVNLALKLASSGFTITFVNTHSIHHQITKAQSN 58 (478)
Q Consensus 24 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 58 (478)
.-++.||+.|.+.|+++ +++......++ +.
T Consensus 11 ~~l~~lAk~L~~lGf~I--~AT~GTAk~L~---e~ 40 (187)
T cd01421 11 TGLVEFAKELVELGVEI--LSTGGTAKFLK---EA 40 (187)
T ss_pred ccHHHHHHHHHHCCCEE--EEccHHHHHHH---Hc
Confidence 44788999999999998 46677777777 66
No 358
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=34.73 E-value=58 Score=31.90 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc-hhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS-IHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~~~ 53 (478)
+|||.|+-.+..| ..+|..|+++||+|+++.... ..+.+.
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~~~~~~~i~ 44 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARRPEFAAALA 44 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 4899999877776 468899999999999998743 334443
No 359
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=34.61 E-value=1.6e+02 Score=29.05 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=23.0
Q ss_pred ccEEEEcCCchhhHHHHHHcCCccEEEec
Q 011724 123 MNCLVTDTFFVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 123 pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 151 (478)
-|++|+. ..+.+.+|..+|+|+|.++.
T Consensus 263 a~l~v~n--DSGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 263 AQLFIGV--DSAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred CCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 7999987 45678899999999999974
No 360
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=34.58 E-value=1.7e+02 Score=30.84 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=23.0
Q ss_pred ccCcceeeeccCch------hhHHHHhcCcceeccC
Q 011724 361 HSAIGGFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 361 ~~~v~~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
.+.+ +++|.|-| ++.+|-..++|||++.
T Consensus 73 ~~~v--~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~ 106 (530)
T PRK07092 73 NAAF--VNLHSAAGVGNAMGNLFTAFKNHTPLVITA 106 (530)
T ss_pred CceE--EEeccCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 3445 88888866 8999999999999883
No 361
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=34.52 E-value=1.6e+02 Score=31.59 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=22.9
Q ss_pred ccCcceeeeccCc------hhhHHHHhcCcceeccC
Q 011724 361 HSAIGGFLTHCGW------NSIQESIWCSVPLLCFP 390 (478)
Q Consensus 361 ~~~v~~~ItHGG~------~s~~Eal~~GvP~l~~P 390 (478)
.+.+ +++|.|- +.+.+|...++|||++.
T Consensus 63 k~gv--~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~ 96 (575)
T TIGR02720 63 KIGV--CFGSAGPGATHLLNGLYDAKEDHVPVLALV 96 (575)
T ss_pred CceE--EEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3445 8999885 48899999999999994
No 362
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.20 E-value=2.2e+02 Score=30.45 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=21.6
Q ss_pred ceeeeccCch------hhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
+++++|.|-| ++.+|...++|||++-
T Consensus 69 gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 69 GCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred eEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3488888854 7899999999999984
No 363
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=33.83 E-value=53 Score=30.00 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 46 (478)
|+=|++..+|+.|-....-.||++|.+++|+|.-.+.+
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 34566667999999999999999999999998766543
No 364
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=33.72 E-value=3.9e+02 Score=27.58 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhh----hhhhhcCCCCCcchhccccCCCCCeEEEEcCCC
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHH----QITKAQSNGDEDDIFAGARKAGLDIRYATVSDG 83 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (478)
..++++++..+ .-...+++.|.+-|-+|..+.+..... .+...+.. +..+..-+
T Consensus 325 ~Gkrv~i~~g~-----~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~---------------~~~v~~~~-- 382 (456)
T TIGR01283 325 KGKKAAIYTGG-----VKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGE---------------GTVMLDDA-- 382 (456)
T ss_pred CCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCC---------------CeEEEeCC--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEE
Q 011724 84 LPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISF 149 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~ 149 (478)
...++.+.++. .+||++|.. .....+|+++|||++.+
T Consensus 383 ------------------------d~~e~~~~i~~--~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 383 ------------------------NPRELLKLLLE--YKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred ------------------------CHHHHHHHHhh--cCCCEEEEc---cchHHHHHhcCCCEEEc
No 365
>PRK06756 flavodoxin; Provisional
Probab=33.62 E-value=76 Score=26.86 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCccCHHHHHH-HHHHHHhCCCeEEEEeC
Q 011724 9 KPHAIAICYPLQGHVIPFVN-LALKLASSGFTITFVNT 45 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~-La~~L~~rGh~Vt~~~~ 45 (478)
||||+++-.-.+||.--+-. |++.|.++|++|.++-.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 47887776667899887554 78889889999887654
No 366
>PRK05380 pyrG CTP synthetase; Validated
Probab=33.54 E-value=4.8e+02 Score=27.60 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=35.2
Q ss_pred CCEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYP---LQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
|+|.+|++.+ +.|-=.-.-.|+..|+.||+.|+..=-+.+...-.
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~ 48 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDP 48 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCC
Confidence 4788899866 34666667789999999999999998777665544
No 367
>PTZ00445 p36-lilke protein; Provisional
Probab=33.52 E-value=1.6e+02 Score=27.02 Aligned_cols=30 Identities=27% Similarity=0.322 Sum_probs=24.7
Q ss_pred cCHHH-HHHHHHHHHhCCCeEEEEeCCchhh
Q 011724 21 GHVIP-FVNLALKLASSGFTITFVNTHSIHH 50 (478)
Q Consensus 21 GH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~ 50 (478)
+|+.| +..++.+|.+.|..|+++|...-..
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 45677 7789999999999999999776543
No 368
>PLN02327 CTP synthase
Probab=33.50 E-value=4.7e+02 Score=27.79 Aligned_cols=44 Identities=9% Similarity=0.094 Sum_probs=34.0
Q ss_pred CEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 10 PHAIAICYP---LQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 10 ~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
||.+|++.+ +.|-=.-.-.|+..|+.||++|+.+=-+.+...-.
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~ 47 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDA 47 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCC
Confidence 478888866 34666677789999999999999988777665543
No 369
>PRK08322 acetolactate synthase; Reviewed
Probab=33.48 E-value=2e+02 Score=30.48 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=21.7
Q ss_pred ceeeeccCc------hhhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGW------NSIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~------~s~~Eal~~GvP~l~~P 390 (478)
+++++|.|- +++.+|...++|||++-
T Consensus 65 gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 65 GVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred EEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 348888874 48899999999999984
No 370
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=33.42 E-value=3.5e+02 Score=24.12 Aligned_cols=113 Identities=10% Similarity=0.122 Sum_probs=66.6
Q ss_pred cCHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCC----------------
Q 011724 21 GHVIPFVNLALKLAS-SGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDG---------------- 83 (478)
Q Consensus 21 GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------- 83 (478)
-.+.-+-.+|+.+.+ .|.++.+.++.+.++.++ |+ +|.+.++-.+
T Consensus 39 ~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~-------------gA-----DfVi~~irvGg~~~r~~De~Ip~k~G 100 (183)
T PF02056_consen 39 ERLEIVERLARRMVEEAGADLKVEATTDRREALE-------------GA-----DFVINQIRVGGLEAREIDEEIPLKYG 100 (183)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHT-------------TE-----SEEEE---TTHHHHHHHHHHTGGCCT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhC-------------CC-----CEEEEEeeecchHHHHHHHHHHHHhC
Confidence 445566778888876 699999999999888887 33 6766655421
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhH---HHHHHcC-CccEEEecchhH
Q 011724 84 LPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSS---MIAKKYN-LVNISFWTEPAL 155 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~---~~A~~lg-iP~v~~~~~~~~ 155 (478)
.......+.....++..+.. .+.+.++.+.+++ -.||+-|....-+.+. .+.+..+ +++|.++.++..
T Consensus 101 i~~~~~eT~G~GG~~~alRt--ipv~~~ia~~i~~--~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~ 172 (183)
T PF02056_consen 101 IVGTIQETVGPGGFFRALRT--IPVMLDIARDIEE--LCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQG 172 (183)
T ss_dssp TT-BTTSSSTHHHHHHHHHH--HHHHHHHHHHHHH--HTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHH
T ss_pred CccccccccCccHHHHHHhh--HHHHHHHHHHHHH--hCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHH
Confidence 11111233445556655432 2223344444443 2389999987555543 4455666 999999987654
No 371
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.32 E-value=1.1e+02 Score=25.70 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=36.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
+.||++...++.+|-..---++..|...|++|.........
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~ 42 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTP 42 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCH
Confidence 57999999999999999999999999999999988875443
No 372
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=33.09 E-value=76 Score=28.59 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCccCHHHHHH-HHHHHHh-CCCeEEEEeCC
Q 011724 9 KPHAIAICYPLQGHVIPFVN-LALKLAS-SGFTITFVNTH 46 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~-La~~L~~-rGh~Vt~~~~~ 46 (478)
||||+++-+-..||..-+.. +++.+.+ .|++|.++.-+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 46888887777899998777 6777776 89999887754
No 373
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=33.02 E-value=1.6e+02 Score=28.27 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchh
Q 011724 27 VNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 27 l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
.++|..++++|++|.++..+...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46888999999999999987654
No 374
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.99 E-value=43 Score=35.78 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=39.0
Q ss_pred ccCcceeeeccCchhhHHHHh----cCcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 361 HSAIGGFLTHCGWNSIQESIW----CSVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 361 ~~~v~~~ItHGG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
.+++ +|+-||-||++.|.. .++|++.+-.. ++-. .++.+++.+++.+++.|
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G--------~lGFL~~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMG--------TVGFLTEFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------CCCcCcccCHHHHHHHHHHHHcC
Confidence 4555 999999999999976 37788877552 2222 56789999999999974
No 375
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.80 E-value=4.3e+02 Score=24.91 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011724 425 DELRKNIKEVRKKLENA 441 (478)
Q Consensus 425 ~~~r~~a~~l~~~~~~a 441 (478)
..|++|++++.+++.+.
T Consensus 124 ~~y~~N~~~~~~~l~~l 140 (264)
T cd01020 124 KYYQANAKKFVASLKPL 140 (264)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46999999999998763
No 376
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=32.78 E-value=3.5e+02 Score=24.86 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=35.0
Q ss_pred hhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEE
Q 011724 272 SECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWV 319 (478)
Q Consensus 272 ~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 319 (478)
+-+.+|+... .+.+.||=+-|.........++..++|++.|..+.-.
T Consensus 22 ~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L 68 (224)
T COG3340 22 PFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSEL 68 (224)
T ss_pred HHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeee
Confidence 3445555543 4579999988888777778899999999999876544
No 377
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=32.76 E-value=57 Score=33.88 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCCc
Q 011724 8 PKPHAIAICYPLQGHVIPF------------VNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~------------l~La~~L~~rGh~Vt~~~~~~ 47 (478)
+-+||++...|+.=-+.|. .+||+++..+|++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 3478888888887777764 689999999999999999876
No 378
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=32.76 E-value=1e+02 Score=27.39 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=27.8
Q ss_pred HHHHHhhccCCCccEEEEcC--CchhhHHHHHHcCCccEEE
Q 011724 111 ELVGNLIQLNPEMNCLVTDT--FFVWSSMIAKKYNLVNISF 149 (478)
Q Consensus 111 ~ll~~l~~~~~~pD~vi~D~--~~~~~~~~A~~lgiP~v~~ 149 (478)
.+.+..+. .++|.|++=. ....+..+|+.+|+|+|.+
T Consensus 44 ~~~~~~~~--~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD--DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc--cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 34444443 4599999876 3378999999999999997
No 379
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=32.53 E-value=69 Score=33.28 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=36.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
.+||++...++.+ .+=...|++.|.++|++|.++.++....++.
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~ 113 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVT 113 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhh
Confidence 4788887766544 4478889999999999999999999888876
No 380
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=32.49 E-value=2.1e+02 Score=29.36 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCccEEEEcCCchhhHHHHHHcCCccEEEe
Q 011724 121 PEMNCLVTDTFFVWSSMIAKKYNLVNISFW 150 (478)
Q Consensus 121 ~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 150 (478)
.++|+||.... ...+|+++|||++.+.
T Consensus 372 ~~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 372 AGADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred cCCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 46999998863 4678999999998873
No 381
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=32.42 E-value=1.5e+02 Score=31.79 Aligned_cols=26 Identities=15% Similarity=0.451 Sum_probs=21.7
Q ss_pred ceeeeccCc------hhhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGW------NSIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~------~s~~Eal~~GvP~l~~P 390 (478)
+++++|.|- +.+.+|...++|||++-
T Consensus 70 gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 70 GMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred EEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 348999884 47889999999999995
No 382
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.40 E-value=85 Score=26.97 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=49.3
Q ss_pred CcccchhHHHHHhhc---ccC---HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 011724 390 PLLTDQFTNRKLVKS---SIT---KEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQFLT 463 (478)
Q Consensus 390 P~~~DQ~~na~rv~~---~~t---~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~~~ 463 (478)
|=.-.+..+|+.+.+ .++ .+.+.+.+.+|+.+ +|+-.-.+.+++..+.++ |....+.+.+++=++..-+
T Consensus 79 PWt~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d--~PkT~vA~~rfKk~~~K~---g~~v~~~~~dIlVdv~SEt 153 (158)
T PF10083_consen 79 PWTENALEAANELIEEDEELSPDEKEQFKESLPDLTKD--TPKTKVAATRFKKILSKA---GSIVGDAIRDILVDVASET 153 (158)
T ss_pred chHHHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc--CCccHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Confidence 555577778877766 555 46778889999874 577788888888888876 5555566666655554434
Q ss_pred cc
Q 011724 464 PK 465 (478)
Q Consensus 464 ~~ 465 (478)
.|
T Consensus 154 ~k 155 (158)
T PF10083_consen 154 AK 155 (158)
T ss_pred HH
Confidence 33
No 383
>PRK07586 hypothetical protein; Validated
Probab=32.36 E-value=2.5e+02 Score=29.46 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=19.1
Q ss_pred eeeccCch------hhHHHHhcCcceeccC
Q 011724 367 FLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 367 ~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
+++|.|-| ++.+|-..++|||++.
T Consensus 68 ~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 68 TLLHLGPGLANGLANLHNARRARTPIVNIV 97 (514)
T ss_pred EEecccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 77777755 5558999999999885
No 384
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=32.35 E-value=3.1e+02 Score=29.13 Aligned_cols=26 Identities=19% Similarity=0.292 Sum_probs=21.6
Q ss_pred ceeeeccCch------hhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
+++++|.|-| .+.+|-..++|+|++-
T Consensus 73 gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 73 GICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred EEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3389998854 8899999999999883
No 385
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=32.30 E-value=2.2e+02 Score=26.00 Aligned_cols=34 Identities=12% Similarity=-0.070 Sum_probs=24.6
Q ss_pred CCccEEEEcCCc--hhhHHHHHHcCCccEEEecchh
Q 011724 121 PEMNCLVTDTFF--VWSSMIAKKYNLVNISFWTEPA 154 (478)
Q Consensus 121 ~~pD~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~ 154 (478)
..||+||+-.-. ..+..=|..+|||+|.++.+..
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCCC
Confidence 459988876533 5566668999999999986544
No 386
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=32.25 E-value=2.2e+02 Score=29.78 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSN 58 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 58 (478)
|+++++.-.- =.-++.+|+.|.+.|++| +++..-...++ +.
T Consensus 4 ~~~aLISVsD----K~~iv~lAk~L~~lGfeI--~AT~GTak~L~---e~ 44 (513)
T PRK00881 4 IKRALISVSD----KTGIVEFAKALVELGVEI--LSTGGTAKLLA---EA 44 (513)
T ss_pred cCEEEEEEeC----cccHHHHHHHHHHCCCEE--EEcchHHHHHH---HC
Confidence 4566655543 345789999999999998 46777777887 66
No 387
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.16 E-value=65 Score=30.65 Aligned_cols=51 Identities=6% Similarity=0.075 Sum_probs=37.9
Q ss_pred cCcceeeeccCchhhHHHHhc-----CcceeccCcccchhHHHHHhhc--ccCHHHHHHHHHHHhCC
Q 011724 362 SAIGGFLTHCGWNSIQESIWC-----SVPLLCFPLLTDQFTNRKLVKS--SITKEEVSEKINRLMSG 421 (478)
Q Consensus 362 ~~v~~~ItHGG~~s~~Eal~~-----GvP~l~~P~~~DQ~~na~rv~~--~~t~~~l~~~v~~ll~~ 421 (478)
+++ +|+=||-||++.|+.. .+|++.+-.. -++-. ..+.+++.+++.++++|
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~-------G~lGFL~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTK-------DQLGFYCDFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecC-------CCCeEcccCCHHHHHHHHHHHHcC
Confidence 566 9999999999999874 5676665541 12222 56789999999999974
No 388
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.98 E-value=2.8e+02 Score=29.64 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=21.5
Q ss_pred ceeeeccCch------hhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
+++++|.|-| ++++|...++|||++-
T Consensus 69 gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 69 GVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred eEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 4488888855 6889999999999984
No 389
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=31.95 E-value=1e+02 Score=28.76 Aligned_cols=45 Identities=18% Similarity=0.043 Sum_probs=38.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
|.+|+++--++.|--.=...++-+|++.|++|..++-+.-.+...
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr 45 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTR 45 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHH
Confidence 468999999999999999999999999999999999776554443
No 390
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=31.88 E-value=1e+02 Score=27.61 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=29.3
Q ss_pred CEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 10 PHAIAIC--YPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 10 ~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
+|++.++ -++-|-..-...||..|+++|++|.++=.+.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4544444 4566888999999999999999999886544
No 391
>PRK04328 hypothetical protein; Provisional
Probab=31.83 E-value=4e+02 Score=24.88 Aligned_cols=44 Identities=14% Similarity=-0.019 Sum_probs=33.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
.-+++.-.|+.|-..-.+.++..-+++|..+.|++.....+.+.
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~ 67 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVR 67 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHH
Confidence 34566777888998888887766667899999999977665543
No 392
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=31.63 E-value=3.3e+02 Score=24.35 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=25.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCch
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASS--GFTITFVNTHSI 48 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~ 48 (478)
.+++++ .|+.||..=|+.|-+.|.++ +-....+.++..
T Consensus 39 ~~~lVv-lGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD~m 78 (211)
T KOG3339|consen 39 LSTLVV-LGSGGHTGEMLRLLEALQDLYSPRSYIAADTDEM 78 (211)
T ss_pred ceEEEE-EcCCCcHHHHHHHHHHHHhhcCceEEEEecCchh
Confidence 456555 48999999999999999775 333334444443
No 393
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=31.52 E-value=75 Score=30.15 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVN 44 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 44 (478)
|+.|.|+--||-|-..-.+.||..|+++|++|.++=
T Consensus 1 m~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID 36 (274)
T PRK13235 1 MRKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVG 36 (274)
T ss_pred CCEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEe
Confidence 346777767788999999999999999999999983
No 394
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=31.22 E-value=1e+02 Score=25.04 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
||++..-++.|-..-...|++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999888766
No 395
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.82 E-value=3.9e+02 Score=24.95 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhccCCCccEEEEcCCchh---hHHHHHHcCCccEEE
Q 011724 107 AHVDELVGNLIQLNPEMNCLVTDTFFVW---SSMIAKKYNLVNISF 149 (478)
Q Consensus 107 ~~~~~ll~~l~~~~~~pD~vi~D~~~~~---~~~~A~~lgiP~v~~ 149 (478)
..++.+++.|+. -++.+.|..+.+ +..+|...|||++.=
T Consensus 138 ~aM~~~m~~Lk~----r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 138 DAMEKLMEALKE----RGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred HHHHHHHHHHHH----CCeEEEcccccccchhhhhHhhcCCceeee
Confidence 345567777764 799999987744 467789999999874
No 396
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=30.80 E-value=4.7e+02 Score=24.83 Aligned_cols=121 Identities=10% Similarity=-0.011 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhcccc-CCCCCeEEEEcCCCCCC
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGAR-KAGLDIRYATVSDGLPL 86 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ 86 (478)
+..+|.+.-.|+-|--.-.-.|++.|.++|++|-+++-+.....-- .. +.-|+-+-.. +..+++-+.+++.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG---GA-lLGDRiRM~~~~~d~~vfIRS~at---- 99 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG---GA-LLGDRIRMQELSRDPGVFIRSMAT---- 99 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-------SS--GGGCHHHHTSTTEEEEEE------
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC---Cc-ccccHHHhcCcCCCCCEEEeecCc----
Confidence 4467888889999999999999999999999999998776554332 00 1001111110 1222444443331
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCch--hhHHHHHHcCCccEEEe
Q 011724 87 NFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFV--WSSMIAKKYNLVNISFW 150 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~--~~~~~A~~lgiP~v~~~ 150 (478)
...+........+ .-.+++. .++|+||++.... .-..++....+-++.+.
T Consensus 100 ----RG~lGGls~~t~~-----~v~ll~a-----aG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~ 151 (266)
T PF03308_consen 100 ----RGSLGGLSRATRD-----AVRLLDA-----AGFDVIIIETVGVGQSEVDIADMADTVVLVLV 151 (266)
T ss_dssp -----SSHHHHHHHHHH-----HHHHHHH-----TT-SEEEEEEESSSTHHHHHHTTSSEEEEEEE
T ss_pred ----CCCCCCccHhHHH-----HHHHHHH-----cCCCEEEEeCCCCCccHHHHHHhcCeEEEEec
Confidence 1233333333221 1124444 5799999997553 33455666555555543
No 397
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=30.79 E-value=58 Score=31.75 Aligned_cols=42 Identities=10% Similarity=0.006 Sum_probs=32.9
Q ss_pred CEEEEEcCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 011724 10 PHAIAICYPLQ---GHVIPFVNLALKLASSGFTITFVNTHSIHHQ 51 (478)
Q Consensus 10 ~~il~~~~~~~---GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 51 (478)
|||+|+.-|-. -+.+-..+|..+.++|||+|.++.+....-.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~ 45 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVV 45 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEE
Confidence 57888875422 4666788999999999999999999876543
No 398
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.35 E-value=2.6e+02 Score=29.99 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.1
Q ss_pred eeeeccCc------hhhHHHHhcCcceeccC
Q 011724 366 GFLTHCGW------NSIQESIWCSVPLLCFP 390 (478)
Q Consensus 366 ~~ItHGG~------~s~~Eal~~GvP~l~~P 390 (478)
++++|.|- +++.+|-..++|||++.
T Consensus 87 v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 117 (587)
T PRK06965 87 VALVTSGPGVTNAVTGIATAYMDSIPMVVIS 117 (587)
T ss_pred EEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 38888884 47889999999999995
No 399
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=30.27 E-value=1.7e+02 Score=24.25 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=42.1
Q ss_pred EEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEe-eccC------hHhhhhc
Q 011724 289 VSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIV-PWCS------QIDVISH 361 (478)
Q Consensus 289 vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~-~~ip------q~~vL~~ 361 (478)
.++||+.+ -.++.+-++.|.+.+.++..+ .+.+-.++...+.++++ +|-. |..+...
T Consensus 2 ~tlaSHSA------LqIl~GAk~EGFrT~~ic~~~----------r~~~Y~~f~~iDe~i~~d~f~di~~~~~q~~L~~~ 65 (124)
T PF06849_consen 2 ATLASHSA------LQILDGAKDEGFRTIAICQKG----------REKFYRRFPFIDEVIVLDSFSDILSEEVQEKLREM 65 (124)
T ss_dssp EEESSTTH------HHHHHHHHHTT--EEEEEETT----------CHHHHHTTTT-SEEEEESSCGHCCSHHHHHHHHHT
T ss_pred eeeechHH------HHHhhhHHHcCCcEEEEECCC----------CcchhhhcCcCcEEEEeCCHHHHHhHHHHHHHHHC
Confidence 35677765 568888889999888777544 13333333356677776 4532 6677788
Q ss_pred cCcceeeeccCch
Q 011724 362 SAIGGFLTHCGWN 374 (478)
Q Consensus 362 ~~v~~~ItHGG~~ 374 (478)
-.+ ||-||..-
T Consensus 66 N~I--~VPhgSfv 76 (124)
T PF06849_consen 66 NAI--FVPHGSFV 76 (124)
T ss_dssp TEE--E--BTTHH
T ss_pred CeE--EecCCCee
Confidence 888 99999874
No 400
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=30.19 E-value=2.3e+02 Score=27.33 Aligned_cols=102 Identities=10% Similarity=-0.101 Sum_probs=57.7
Q ss_pred hhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEe
Q 011724 271 ESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIV 350 (478)
Q Consensus 271 ~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~ 350 (478)
.+++.......+-..+-.-............+..+.+++++.|..+++-++.. ..+.+. ...
T Consensus 115 ~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~--------~~~~~~------~~~---- 176 (293)
T COG2159 115 AEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG--------PGGAGL------EKG---- 176 (293)
T ss_pred HHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC--------CCCccc------ccC----
Confidence 35666666554322222222222223444557889999999999999977755 111110 000
Q ss_pred eccC---hHhhhhccCcceeeeccCchhhHHHHhcCcceeccCcccchhHHHHHhhc
Q 011724 351 PWCS---QIDVISHSAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKS 404 (478)
Q Consensus 351 ~~ip---q~~vL~~~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~ 404 (478)
...| .......|+++.++.|+|. ..|...++..+|.+...
T Consensus 177 ~~~p~~~~~va~~fP~l~IVl~H~G~--------------~~p~~~~a~~~a~~~~n 219 (293)
T COG2159 177 HSDPLYLDDVARKFPELKIVLGHMGE--------------DYPWELEAIELAYAHPN 219 (293)
T ss_pred CCCchHHHHHHHHCCCCcEEEEecCC--------------CCchhHHHHHHHHhCCC
Confidence 1122 3345567899999999994 34455555556655444
No 401
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=30.11 E-value=4e+02 Score=29.59 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCch
Q 011724 9 KPHAIAIC--YPLQGHVIPFVNLALKLASSGFTITFVNTHSI 48 (478)
Q Consensus 9 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 48 (478)
..|++.++ -++-|-..-...||..|++.|++|.++=.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34655555 55779999999999999999999999866544
No 402
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=30.01 E-value=1.3e+02 Score=27.43 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=34.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
-+++...|+.|-..-.+.++..-+++|+.|.+++.....+.+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~ 60 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERIL 60 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 4566667788988888888877777899999999988776654
No 403
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=29.85 E-value=1.1e+02 Score=29.61 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCeEEEEeCC
Q 011724 9 KPHAIAICYPLQG-H---VIPFVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 9 ~~~il~~~~~~~G-H---~~p~l~La~~L~~rGh~Vt~~~~~ 46 (478)
++||+++..+..+ | +....+++++|.+.||+|.++...
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~ 44 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDAS 44 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 5799999865433 3 344567899999999999888543
No 404
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.71 E-value=76 Score=27.92 Aligned_cols=30 Identities=3% Similarity=-0.189 Sum_probs=21.4
Q ss_pred CCccEEEEcCCchh--hHHHHHHcCCccEEEe
Q 011724 121 PEMNCLVTDTFFVW--SSMIAKKYNLVNISFW 150 (478)
Q Consensus 121 ~~pD~vi~D~~~~~--~~~~A~~lgiP~v~~~ 150 (478)
-+||+||+...... ....-+..|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 46999998754422 4455578999998874
No 405
>PRK10037 cell division protein; Provisional
Probab=29.70 E-value=87 Score=29.27 Aligned_cols=39 Identities=13% Similarity=-0.063 Sum_probs=30.7
Q ss_pred CCEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 9 KPHAIAIC-YPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 9 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
|+.|.+.. -||-|-..-...||..|+++|++|.++=.+.
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 34555555 5677999999999999999999999984443
No 406
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.64 E-value=3e+02 Score=29.42 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=21.7
Q ss_pred ceeeeccCc------hhhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGW------NSIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~------~s~~Eal~~GvP~l~~P 390 (478)
+++++|.|- +++.+|...++|||++-
T Consensus 69 gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 69 GVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 338888884 48899999999999984
No 407
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.63 E-value=4.4e+02 Score=29.18 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=31.5
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCch
Q 011724 9 KPHAIAIC--YPLQGHVIPFVNLALKLASSGFTITFVNTHSI 48 (478)
Q Consensus 9 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 48 (478)
..|++.++ .|+-|-..-...||..|+..|++|.++=.+--
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 45666666 44668888899999999999999999876543
No 408
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=29.48 E-value=2.9e+02 Score=23.91 Aligned_cols=98 Identities=11% Similarity=-0.010 Sum_probs=0.0
Q ss_pred hhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEee
Q 011724 272 SECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVP 351 (478)
Q Consensus 272 ~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~ 351 (478)
.++-++|.+.+ ...++ | ..........++..+.+.+++=+++.. ....+. ........+
T Consensus 21 ~~lg~~La~~g---~~lv~-G----g~~GlM~a~a~ga~~~gg~viGVlp~~-----------l~~~~~--~~~~~i~~~ 79 (159)
T TIGR00725 21 YRLGKELAKKG---HILIN-G----GRTGVMEAVSKGAREAGGLVVGILPDE-----------DFAGNP--YLTIKVKTG 79 (159)
T ss_pred HHHHHHHHHCC---CEEEc-C----CchhHHHHHHHHHHHCCCeEEEECChh-----------hccCCC--CceEEEECC
Q ss_pred c-cChHhhhhccCcceeeeccCchhhHHH---HhcCcceeccC
Q 011724 352 W-CSQIDVISHSAIGGFLTHCGWNSIQES---IWCSVPLLCFP 390 (478)
Q Consensus 352 ~-ipq~~vL~~~~v~~~ItHGG~~s~~Ea---l~~GvP~l~~P 390 (478)
+ .+...++...+-..++-=||.||+-|+ +.+++|+++++
T Consensus 80 ~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~ 122 (159)
T TIGR00725 80 MNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLR 122 (159)
T ss_pred CcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEE
No 409
>PRK13604 luxD acyl transferase; Provisional
Probab=29.47 E-value=1e+02 Score=29.95 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFV 43 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 43 (478)
++.+.++++.+..++-..+..+|+.|+++|+.|.-+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 345677777777777777999999999999998766
No 410
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=29.47 E-value=56 Score=28.82 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=23.5
Q ss_pred cCcceeeeccCchhhHHHHhcCcceeccCcccchhHHH
Q 011724 362 SAIGGFLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNR 399 (478)
Q Consensus 362 ~~v~~~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na 399 (478)
..+.++|++||...+..... ++|+|-+|...--...|
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~a 69 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRA 69 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHH
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHH
Confidence 34444999999999999888 99999999865333333
No 411
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=29.29 E-value=1.5e+02 Score=31.53 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.0
Q ss_pred eeeeccCc------hhhHHHHhcCcceeccC
Q 011724 366 GFLTHCGW------NSIQESIWCSVPLLCFP 390 (478)
Q Consensus 366 ~~ItHGG~------~s~~Eal~~GvP~l~~P 390 (478)
++++|.|- +.+.||-..++|||++.
T Consensus 75 v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 75 AVIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred EEEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 37888774 48899999999999994
No 412
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.25 E-value=1.2e+02 Score=26.29 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=31.2
Q ss_pred HHHHHHHhhc--cCCCccEEEEcCCc----------hhhHHHHHHcCCccEEEecch
Q 011724 109 VDELVGNLIQ--LNPEMNCLVTDTFF----------VWSSMIAKKYNLVNISFWTEP 153 (478)
Q Consensus 109 ~~~ll~~l~~--~~~~pD~vi~D~~~----------~~~~~~A~~lgiP~v~~~~~~ 153 (478)
+++++..++. -+..||+|++..-+ .-+..+|+++|+|++-.+...
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 3455555542 24689999997654 235688999999998876543
No 413
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.21 E-value=4.4e+02 Score=24.33 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=29.3
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh-hhhh
Q 011724 17 YPLQGHVIPFVNLALKLASSGFTITFVNTHSIH-HQIT 53 (478)
Q Consensus 17 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~~~ 53 (478)
--+.|--.-...++--+...||.|+++++..-. +.+.
T Consensus 36 d~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~ 73 (235)
T COG2874 36 DNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIK 73 (235)
T ss_pred CCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHH
Confidence 346688888889999999999999999997643 4444
No 414
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=29.15 E-value=1.4e+02 Score=23.33 Aligned_cols=40 Identities=5% Similarity=0.105 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
+++||++++..|.|--.-...+=+.+.++|.++.+.....
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~ 41 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSY 41 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecH
Confidence 4589999998777522333445566666888877666554
No 415
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=29.06 E-value=1.3e+02 Score=26.93 Aligned_cols=30 Identities=10% Similarity=-0.127 Sum_probs=24.3
Q ss_pred CCccEEEEcCCc--hhhHHHHHHcCCccEEEe
Q 011724 121 PEMNCLVTDTFF--VWSSMIAKKYNLVNISFW 150 (478)
Q Consensus 121 ~~pD~vi~D~~~--~~~~~~A~~lgiP~v~~~ 150 (478)
.++|+|++=... +.+..+|..+|+|++.+-
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 468999876533 778899999999999974
No 416
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=28.85 E-value=1.2e+02 Score=27.69 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=24.1
Q ss_pred CCccCHHHHHH---HHHHHHhCCCeEEEEeCCc
Q 011724 18 PLQGHVIPFVN---LALKLASSGFTITFVNTHS 47 (478)
Q Consensus 18 ~~~GH~~p~l~---La~~L~~rGh~Vt~~~~~~ 47 (478)
+-.||+.+.+. +++.|..+|++|.+++.-.
T Consensus 34 ~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~d 66 (213)
T cd00672 34 AHIGHARTYVVFDVLRRYLEDLGYKVRYVQNIT 66 (213)
T ss_pred cccccchhHHHHHHHHHHHHhcCCeeEEEeecC
Confidence 45599998765 6888888999999998744
No 417
>PRK09620 hypothetical protein; Provisional
Probab=28.74 E-value=79 Score=29.32 Aligned_cols=38 Identities=11% Similarity=-0.053 Sum_probs=26.7
Q ss_pred CEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCCc
Q 011724 10 PHAIAICYPLQGHVIP------------FVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
+||++...|+.=.+.| -..||++|.++|++|+++....
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5777666554433322 2568999999999999997653
No 418
>PRK08266 hypothetical protein; Provisional
Probab=28.67 E-value=2.5e+02 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.370 Sum_probs=21.1
Q ss_pred eeeeccCch------hhHHHHhcCcceeccC
Q 011724 366 GFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 366 ~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
++++|.|-| ++.||-..++|||++-
T Consensus 71 v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 71 VCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred EEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 388888854 8899999999999883
No 419
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=28.57 E-value=87 Score=29.71 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVN 44 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 44 (478)
|+.|.|+--+|-|-..-.+.||..|+++|++|.++=
T Consensus 1 ~~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 1 MRQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEe
Confidence 345666666677999999999999999999999983
No 420
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=28.39 E-value=2.5e+02 Score=27.47 Aligned_cols=27 Identities=4% Similarity=-0.048 Sum_probs=23.4
Q ss_pred ccEEEEcCCchhhHHHHHHcCCccEEEec
Q 011724 123 MNCLVTDTFFVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 123 pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 151 (478)
-|++|+. ..+.+.+|..+|+|+|.++.
T Consensus 261 a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 261 ARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred CCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 7999987 56788999999999999864
No 421
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=28.36 E-value=1.1e+02 Score=28.81 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=30.6
Q ss_pred CCEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011724 9 KPHAIAIC-YPLQGHVIPFVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 9 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 46 (478)
|+.|++.. -||-|-..=.-+||..|++.|+.|..+=-.
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45565555 567799999999999999999999887643
No 422
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=28.34 E-value=4.2e+02 Score=27.57 Aligned_cols=89 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhh----hhhhhcCCCCCcchhccccCCCCCeEEEEcCCC
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHH----QITKAQSNGDEDDIFAGARKAGLDIRYATVSDG 83 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (478)
..++++++..+ ....++++.|.+.|-+|..+....... .++..+.. +..+..
T Consensus 323 ~Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~---------------~~~v~~---- 378 (475)
T PRK14478 323 EGKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGP---------------DAHMID---- 378 (475)
T ss_pred CCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCC---------------CcEEEe----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccE
Q 011724 84 LPLNFDRSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNI 147 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v 147 (478)
+.-..++.++++. .+||++|.. .....+|+++|||++
T Consensus 379 -------------------d~~~~e~~~~i~~-----~~pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 379 -------------------DANPRELYKMLKE-----AKADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred -------------------CCCHHHHHHHHhh-----cCCCEEEec---CchhhhhhhcCCCEE
No 423
>PRK06835 DNA replication protein DnaC; Validated
Probab=28.32 E-value=90 Score=30.75 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=37.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
..++|+-.+|.|-..=+.++|++|.++|+.|.|++...+...+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 56788888888877788899999999999999999988777765
No 424
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.18 E-value=87 Score=27.58 Aligned_cols=45 Identities=9% Similarity=0.140 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhccCCCccEEEEcCCchhhHHHHHHcCCccEEEecchhHH
Q 011724 107 AHVDELVGNLIQLNPEMNCLVTDTFFVWSSMIAKKYNLVNISFWTEPALV 156 (478)
Q Consensus 107 ~~~~~ll~~l~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 156 (478)
..++..++.++. .+.|+||.+. .+...|+++|+|++.+.++..+.
T Consensus 112 ~e~~~~i~~~~~--~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~esi 156 (176)
T PF06506_consen 112 EEIEAAIKQAKA--EGVDVIVGGG---VVCRLARKLGLPGVLIESGEESI 156 (176)
T ss_dssp HHHHHHHHHHHH--TT--EEEESH---HHHHHHHHTTSEEEESS--HHHH
T ss_pred HHHHHHHHHHHH--cCCcEEECCH---HHHHHHHHcCCcEEEEEecHHHH
Confidence 356666677665 5799999996 35788999999999998765543
No 425
>PRK05802 hypothetical protein; Provisional
Probab=28.15 E-value=1.1e+02 Score=29.94 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=29.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
.+++++. ++. =+.|++.+++.|.++|.+|+++-.....
T Consensus 173 ~~~llIa-GGi-GIaPl~~l~~~l~~~~~~v~li~g~r~~ 210 (320)
T PRK05802 173 GKSLVIA-RGI-GQAPGVPVIKKLYSNGNKIIVIIDKGPF 210 (320)
T ss_pred CeEEEEE-eEE-eHHHHHHHHHHHHHcCCcEEEEEeCCCH
Confidence 4777777 333 3899999999999999899988765444
No 426
>PRK11914 diacylglycerol kinase; Reviewed
Probab=28.14 E-value=2.2e+02 Score=27.55 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.3
Q ss_pred cCcceeeeccCchhhHHHH----hcCcceeccCc
Q 011724 362 SAIGGFLTHCGWNSIQESI----WCSVPLLCFPL 391 (478)
Q Consensus 362 ~~v~~~ItHGG~~s~~Eal----~~GvP~l~~P~ 391 (478)
.++ +|--||-||+.|++ ..++|+-++|.
T Consensus 65 ~d~--vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 65 TDA--LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CCE--EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 455 99999999999987 34789999996
No 427
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=28.14 E-value=4.2e+02 Score=27.32 Aligned_cols=34 Identities=6% Similarity=-0.007 Sum_probs=26.6
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011724 12 AIAICYP-LQGHVIPFVNLALKLASSGFTITFVNT 45 (478)
Q Consensus 12 il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 45 (478)
|++.... +-|-..-..+|++.|+++|++|..+=+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 4444333 458889999999999999999998854
No 428
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=28.02 E-value=1.1e+02 Score=25.99 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=33.4
Q ss_pred CCEEEEEcCCCccCHHHHHH-HHHHHHhCCCeEEEEeCCchhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVN-LALKLASSGFTITFVNTHSIHHQI 52 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~-La~~L~~rGh~Vt~~~~~~~~~~~ 52 (478)
||||+++-.-..|+.--+-. |++.|.+.|++|++...+...+..
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~~ 45 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDDL 45 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchhh
Confidence 68898888777888877655 677787889999777777655533
No 429
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=27.88 E-value=1.7e+02 Score=27.57 Aligned_cols=106 Identities=9% Similarity=-0.043 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCC--CCCCCCCHHHHHHHHHH
Q 011724 26 FVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPL--NFDRSLNHDQFMECLLH 103 (478)
Q Consensus 26 ~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 103 (478)
+-.+++.+.+.|-+|.+.+.......+. .. .....+-+..+|...+. ..+........+...-.
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~---~~-----------~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GP 182 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFV---AA-----------DAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGP 182 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHh---cC-----------cccceEEEEEcCchHHHHHHHhcCCChhhEEEecCC
Confidence 4456777777788888888877777776 22 11113444555522110 00000000000000001
Q ss_pred HhhHHHHHHHHHhhccCCCccEEEEcCCchh-----hHHHHHHcCCccEEEe
Q 011724 104 VFSAHVDELVGNLIQLNPEMNCLVTDTFFVW-----SSMIAKKYNLVNISFW 150 (478)
Q Consensus 104 ~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~-----~~~~A~~lgiP~v~~~ 150 (478)
+....=+.+++. .+.|+||+-...-. =..+|+.+|||+|.+-
T Consensus 183 fs~~~n~all~q-----~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 183 FSEEDNKALLEQ-----YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred cChHHHHHHHHH-----hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 111222356666 45999999875522 2588999999999984
No 430
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=27.81 E-value=5.4e+02 Score=24.57 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=29.2
Q ss_pred eccChHhhhhccCcceeeeccC-chhhHHHHhcCcceecc
Q 011724 351 PWCSQIDVISHSAIGGFLTHCG-WNSIQESIWCSVPLLCF 389 (478)
Q Consensus 351 ~~ipq~~vL~~~~v~~~ItHGG-~~s~~Eal~~GvP~l~~ 389 (478)
++=|+.+.|+.++. +|.-.. .|-..||.+.|+|+.++
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 44589999998887 766555 58889999999999553
No 431
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=27.79 E-value=1.7e+02 Score=31.14 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=22.4
Q ss_pred ccCcceeeeccCc------hhhHHHHhcCcceecc
Q 011724 361 HSAIGGFLTHCGW------NSIQESIWCSVPLLCF 389 (478)
Q Consensus 361 ~~~v~~~ItHGG~------~s~~Eal~~GvP~l~~ 389 (478)
.+.+ +++|.|- +.+.||...++|||++
T Consensus 64 kpgv--~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i 96 (549)
T PRK06457 64 KPSA--CMGTSGPGSIHLLNGLYDAKMDHAPVIAL 96 (549)
T ss_pred CCeE--EEeCCCCchhhhHHHHHHHHhcCCCEEEE
Confidence 3455 8999884 4889999999999998
No 432
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=27.75 E-value=1.3e+02 Score=27.64 Aligned_cols=39 Identities=13% Similarity=-0.021 Sum_probs=26.9
Q ss_pred CCEEEEEcCC----CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 9 KPHAIAICYP----LQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 9 ~~~il~~~~~----~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
|+||+++..+ ......=++.--..|.+.|++|+++++..
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3578777631 11244456666788899999999999855
No 433
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=27.72 E-value=1.7e+02 Score=32.49 Aligned_cols=36 Identities=14% Similarity=0.393 Sum_probs=23.9
Q ss_pred hhccCcceeeeccCchhhHHH--Hh--------cCcceeccCcccc
Q 011724 359 ISHSAIGGFLTHCGWNSIQES--IW--------CSVPLLCFPLLTD 394 (478)
Q Consensus 359 L~~~~v~~~ItHGG~~s~~Ea--l~--------~GvP~l~~P~~~D 394 (478)
|..-.+.++|.=||.+|+.-| |+ .|+|+|++|-..|
T Consensus 474 l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTID 519 (762)
T cd00764 474 FQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVS 519 (762)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEeccccc
Confidence 445555667777777766544 22 6899999997554
No 434
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.70 E-value=72 Score=31.57 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 6 KKPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 6 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
.++||||.++-.+.+|+ .+|..|+++|+.+.+...+...+.+.
T Consensus 4 ~~~~mkI~IiGaGa~G~-----alA~~La~~g~v~l~~~~~~~~~~i~ 46 (341)
T PRK12439 4 AKREPKVVVLGGGSWGT-----TVASICARRGPTLQWVRSAETADDIN 46 (341)
T ss_pred ccCCCeEEEECCCHHHH-----HHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 37889999999999886 46777889996554543344444454
No 435
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.69 E-value=1.1e+02 Score=25.44 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQI 52 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 52 (478)
+|++.+..+.+|-.----++..|...|++|+........+.+
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~ 42 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEF 42 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 478888899999999988999999999999998886654443
No 436
>PRK05858 hypothetical protein; Provisional
Probab=27.42 E-value=3e+02 Score=29.15 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=20.6
Q ss_pred eeeccCc------hhhHHHHhcCcceeccC
Q 011724 367 FLTHCGW------NSIQESIWCSVPLLCFP 390 (478)
Q Consensus 367 ~ItHGG~------~s~~Eal~~GvP~l~~P 390 (478)
+++|.|- +++.+|-..++|||++.
T Consensus 71 ~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 71 AVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 8888774 48899999999999985
No 437
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=27.21 E-value=5.4e+02 Score=24.37 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=55.7
Q ss_pred cCHHHH----HHHHHHHHh--CCCeEEEEeC--CchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCCCC
Q 011724 21 GHVIPF----VNLALKLAS--SGFTITFVNT--HSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRSL 92 (478)
Q Consensus 21 GH~~p~----l~La~~L~~--rGh~Vt~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 92 (478)
--+||+ +..|-+|++ .|-+|+.++- +...+.+++++..| + .=- +-+.+.. ....
T Consensus 33 ~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLAmG--------a-----Dra-ili~d~~----~~~~ 94 (260)
T COG2086 33 LSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALAMG--------A-----DRA-ILITDRA----FAGA 94 (260)
T ss_pred cccChhhHHHHHHHHHhhccCCCceEEEEEecchhhHHHHHHHHhcC--------C-----CeE-EEEeccc----ccCc
Confidence 345554 445677777 4777888874 55667777666773 2 111 1111110 0001
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCc------hhhHHHHHHcCCccEEEec
Q 011724 93 NHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFF------VWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~------~~~~~~A~~lgiP~v~~~~ 151 (478)
+... ....+.+.++. .++|+|++.--+ --+..+|+.||+|++.+..
T Consensus 95 d~~~--------ta~~Laa~~~~-----~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 95 DPLA--------TAKALAAAVKK-----IGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred cHHH--------HHHHHHHHHHh-----cCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 1111 11123344455 458999975433 4578999999999999764
No 438
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=27.11 E-value=1.2e+02 Score=28.35 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=29.1
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011724 5 HKKPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 5 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 46 (478)
.+...++|+++...-.-=..-+-+....|+++||+|++++-.
T Consensus 6 ~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 6 PMLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred ccccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 345568887776443334455666777778999999999853
No 439
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.05 E-value=2.3e+02 Score=27.66 Aligned_cols=71 Identities=11% Similarity=0.197 Sum_probs=37.1
Q ss_pred eeeccCchhhHHHHhcCcceeccCcccchhHHHHHhhcccCHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCC
Q 011724 367 FLTHCGWNSIQESIWCSVPLLCFPLLTDQFTNRKLVKSSITKEEVSEKINRLMSGKSSDELRKNIKEVRKKLENALSADG 446 (478)
Q Consensus 367 ~ItHGG~~s~~Eal~~GvP~l~~P~~~DQ~~na~rv~~~~t~~~l~~~v~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gg 446 (478)
+|--.++..+. -.+++|+|+..+ .+.+|..+|.-++. ...+...++--+.+.+++..|
T Consensus 199 IiG~kpY~~la--~ky~~P~VVaGF---------------EP~DiL~~i~~ll~-----q~~~g~akv~NeY~RaV~~eG 256 (364)
T COG0409 199 IIGTKPYEFLA--EKYKFPIVVAGF---------------EPLDILLGVLMLLK-----QIIRGEAKVENEYKRAVKDEG 256 (364)
T ss_pred EecccccHHHH--HhcCCCeEEecC---------------CHHHHHHHHHHHHH-----HHhcCceEEEecceeecCCCc
Confidence 44444444433 357899988764 56666666666553 222333333333444444444
Q ss_pred ChHHHHHHHHHHHHh
Q 011724 447 SSQKNFNQFINDVQF 461 (478)
Q Consensus 447 ~~~~~~~~~i~~~~~ 461 (478)
. ..+.++++++.+
T Consensus 257 N--~~Aq~~i~~vFe 269 (364)
T COG0409 257 N--VKAQELINEVFE 269 (364)
T ss_pred C--HHHHHHHHHHhc
Confidence 3 245566666555
No 440
>PRK06703 flavodoxin; Provisional
Probab=26.94 E-value=1.1e+02 Score=26.00 Aligned_cols=39 Identities=5% Similarity=0.166 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCccCHHHHHH-HHHHHHhCCCeEEEEeCCc
Q 011724 9 KPHAIAICYPLQGHVIPFVN-LALKLASSGFTITFVNTHS 47 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~-La~~L~~rGh~Vt~~~~~~ 47 (478)
|||++++=.-.+|+..-+-. |++.|.+.|++|.+.-...
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~ 40 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDG 40 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhh
Confidence 46666655556788777554 7888888999998765433
No 441
>CHL00175 minD septum-site determining protein; Validated
Probab=26.86 E-value=1.2e+02 Score=28.82 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCCCEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 7 KPKPHAIAIC--YPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 7 ~~~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
++|+|++.+. -||-|-..-...||..|+++|++|.++=.+.
T Consensus 12 ~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 12 ATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4566776666 4577899999999999999999998885443
No 442
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=26.78 E-value=1.4e+02 Score=31.73 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=22.8
Q ss_pred ccCcceeeeccCc------hhhHHHHhcCcceeccC
Q 011724 361 HSAIGGFLTHCGW------NSIQESIWCSVPLLCFP 390 (478)
Q Consensus 361 ~~~v~~~ItHGG~------~s~~Eal~~GvP~l~~P 390 (478)
.+.+ +++|.|- +.+.||...++|||++-
T Consensus 63 ~~gv--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 63 KVGV--CIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3445 8888885 48899999999999994
No 443
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=26.76 E-value=1e+02 Score=31.82 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
++||+++-.+..| +++|+.|.++|++|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 6999999999888 89999999999999999865554
No 444
>PRK04940 hypothetical protein; Provisional
Probab=26.74 E-value=1.7e+02 Score=26.06 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=25.2
Q ss_pred CccEEEEcCCc-hhhHHHHHHcCCccEEEecc
Q 011724 122 EMNCLVTDTFF-VWSSMIAKKYNLVNISFWTE 152 (478)
Q Consensus 122 ~pD~vi~D~~~-~~~~~~A~~lgiP~v~~~~~ 152 (478)
++.+||..... +++..+|+++|+|.|.+.|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46777777655 89999999999999999654
No 445
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=26.68 E-value=4.6e+02 Score=23.76 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=53.8
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCCCCCCHHHH
Q 011724 18 PLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRSLNHDQF 97 (478)
Q Consensus 18 ~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 97 (478)
++.|.+- ..+++.|.+.||+|+.++-+...+...+.... ++.+...+..
T Consensus 5 GatG~~G--~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~---------------g~~vv~~d~~-------------- 53 (233)
T PF05368_consen 5 GATGNQG--RSVVRALLSAGFSVRALVRDPSSDRAQQLQAL---------------GAEVVEADYD-------------- 53 (233)
T ss_dssp TTTSHHH--HHHHHHHHHTTGCEEEEESSSHHHHHHHHHHT---------------TTEEEES-TT--------------
T ss_pred CCccHHH--HHHHHHHHhCCCCcEEEEeccchhhhhhhhcc---------------cceEeecccC--------------
Confidence 4445443 57889999999999999998866665422234 5555543211
Q ss_pred HHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCc---------hhhHHHHHHcCCccEEEec
Q 011724 98 MECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFF---------VWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 98 ~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~---------~~~~~~A~~lgiP~v~~~~ 151 (478)
..+.+.+.++ +.|.|++-... .-...+|.+.||+.+..+.
T Consensus 54 ----------~~~~l~~al~----g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 54 ----------DPESLVAALK----GVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp -----------HHHHHHHHT----TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred ----------CHHHHHHHHc----CCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 0123334443 47777765441 1245789999999998654
No 446
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=26.62 E-value=6.6e+02 Score=25.17 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHhh--CCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChH---hhhhccCcceeeeccC
Q 011724 298 SKNDIVEIALGLLL--SEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQI---DVISHSAIGGFLTHCG 372 (478)
Q Consensus 298 ~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~---~vL~~~~v~~~ItHGG 372 (478)
..+++..++.-+-+ ...++++.-.+. +.. . + ++..+++++.+++.+.+-+|++ ++|.+.++ |++-.=
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGP-k~i-~---l-ee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSl 280 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGP-KRI-D---L-EEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSL 280 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCc-ccc-h---H-HHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHH
Confidence 35555555555444 344655543332 111 0 1 3334455578899999999964 47778888 876533
Q ss_pred ----chhhHHHHhcCcceecc
Q 011724 373 ----WNSIQESIWCSVPLLCF 389 (478)
Q Consensus 373 ----~~s~~Eal~~GvP~l~~ 389 (478)
.-.+.||.+||.|+|..
T Consensus 281 TEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 281 TEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHHhCCCEEEEe
Confidence 34678999999999853
No 447
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.59 E-value=77 Score=30.48 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCch
Q 011724 7 KPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSI 48 (478)
Q Consensus 7 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 48 (478)
+++.||.++-.+..| ..+|..|+.+||+|+++-....
T Consensus 3 ~~~~~V~ViGaG~mG-----~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 3 DAIQRVGVVGAGQMG-----AGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred CCccEEEEEcccHHH-----HHHHHHHHhCCCEEEEEECCHH
Confidence 445689998777666 4688899999999999976543
No 448
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=26.55 E-value=1.5e+02 Score=23.77 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
|+||+++|..|.|--.-...+-+.+.++|.++.+-....
T Consensus 1 MkkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~ 39 (104)
T PRK09590 1 MKKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITA 39 (104)
T ss_pred CcEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecH
Confidence 468999998777544555556566666888877655444
No 449
>PRK13059 putative lipid kinase; Reviewed
Probab=26.51 E-value=2.3e+02 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=22.9
Q ss_pred cCcceeeeccCchhhHHHH---h---cCcceeccCcc
Q 011724 362 SAIGGFLTHCGWNSIQESI---W---CSVPLLCFPLL 392 (478)
Q Consensus 362 ~~v~~~ItHGG~~s~~Eal---~---~GvP~l~~P~~ 392 (478)
.++ +|.-||-||+.|++ . .++|+-++|..
T Consensus 57 ~d~--vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 57 YKY--ILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred CCE--EEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 455 99999999988874 2 35899999973
No 450
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=26.49 E-value=2.1e+02 Score=29.86 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCC
Q 011724 24 IPFVNLALKLASSGFTITFVNTHSIHHQITKAQSN 58 (478)
Q Consensus 24 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 58 (478)
.-++.+|+.|.+.|++| +++......++ +.
T Consensus 11 ~~iv~lAk~L~~lGfeI--iATgGTak~L~---e~ 40 (511)
T TIGR00355 11 TGIVEFAQGLVERGVEL--LSTGGTAKLLA---EA 40 (511)
T ss_pred ccHHHHHHHHHHCCCEE--EEechHHHHHH---HC
Confidence 44778999999999998 47777777887 66
No 451
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=26.45 E-value=2.4e+02 Score=26.57 Aligned_cols=105 Identities=10% Similarity=-0.051 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCC-CeEEEEeCCchhhhhhhhcC-CCCCcchhccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHHHH
Q 011724 24 IPFVNLALKLASSG-FTITFVNTHSIHHQITKAQS-NGDEDDIFAGARKAGLDIRYATVSDGLPLNFDRSLNHDQFMECL 101 (478)
Q Consensus 24 ~p~l~La~~L~~rG-h~Vt~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (478)
.-+-..++.|.+.+ .+|.+.+.....+.+. . . ..+..+-++.+|..... ..-....++...
T Consensus 116 ~~~~eA~~~l~~~~~~~iflttGsk~L~~f~---~~~-----------~~~~r~~~RvLp~~~~~---~g~~~~~iia~~ 178 (249)
T PF02571_consen 116 DSYEEAAELLKELGGGRIFLTTGSKNLPPFV---PAP-----------LPGERLFARVLPTPESA---LGFPPKNIIAMQ 178 (249)
T ss_pred CCHHHHHHHHhhcCCCCEEEeCchhhHHHHh---hcc-----------cCCCEEEEEECCCcccc---CCCChhhEEEEe
Confidence 34566778887777 7777777777776664 2 1 11114555566632211 000001100000
Q ss_pred HHHhhHHHHHHHHHhhccCCCccEEEEcCCchhh----HHHHHHcCCccEEEe
Q 011724 102 LHVFSAHVDELVGNLIQLNPEMNCLVTDTFFVWS----SMIAKKYNLVNISFW 150 (478)
Q Consensus 102 ~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~~~----~~~A~~lgiP~v~~~ 150 (478)
-.+....-.++++. .+.|+||+-...-.+ ..+|+.+|||+|.+.
T Consensus 179 GPfs~e~n~al~~~-----~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 179 GPFSKELNRALFRQ-----YGIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred CCCCHHHHHHHHHH-----cCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 00001112346666 459999998855323 478999999999984
No 452
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=26.41 E-value=2.5e+02 Score=29.18 Aligned_cols=120 Identities=18% Similarity=0.294 Sum_probs=74.9
Q ss_pred eccChH---hhhhccCcceeee--ccCchhhH-HHHhcCcc----eeccCcc---cchhHHHHHhhcccCHHHHHHHHHH
Q 011724 351 PWCSQI---DVISHSAIGGFLT--HCGWNSIQ-ESIWCSVP----LLCFPLL---TDQFTNRKLVKSSITKEEVSEKINR 417 (478)
Q Consensus 351 ~~ipq~---~vL~~~~v~~~It--HGG~~s~~-Eal~~GvP----~l~~P~~---~DQ~~na~rv~~~~t~~~l~~~v~~ 417 (478)
+-+|+. +++..+++ ++|| .-|+|.|. |-+++..| +|++--+ +.|. ..+.++.-.+.++++++|.+
T Consensus 338 ~~~~~~~l~alyr~ADv-~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L-~~AllVNP~d~~~~A~Ai~~ 415 (474)
T PRK10117 338 QHFDRKLLMKIFRYSDV-GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIVNPYDRDEVAAALDR 415 (474)
T ss_pred CCCCHHHHHHHHHhccE-EEecccccccccccchheeeecCCCCccEEEecccchHHHh-CCCeEECCCCHHHHHHHHHH
Confidence 445654 45556666 3344 45888665 88887664 3444432 2333 34444447889999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCc-cccCCCcccCCCCC
Q 011724 418 LMSGKSSDELRKNIKEVRKKLENALSADGSSQKNFNQFINDVQFLTP-KKCGSATSNHALFP 478 (478)
Q Consensus 418 ll~~~~~~~~r~~a~~l~~~~~~a~~~gg~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~ 478 (478)
.|+=+ ..+-++|-+++.+..+. .++..=.++|++.+...+. ....+...+.++||
T Consensus 416 AL~Mp-~~Er~~R~~~l~~~v~~-----~dv~~W~~~fL~~L~~~~~~~~~~~~~~~~~~~~ 471 (474)
T PRK10117 416 ALTMP-LAERISRHAEMLDVIVK-----NDINHWQECFISDLKQIVPRSAESQQRDKVATFP 471 (474)
T ss_pred HHcCC-HHHHHHHHHHHHHHhhh-----CCHHHHHHHHHHHHHHhhhcCcchhhhcccccCC
Confidence 99722 23445555666666654 5667778899998887642 34455556677776
No 453
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=26.35 E-value=1.3e+02 Score=27.83 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCe-EEEEeCC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFT-ITFVNTH 46 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~-Vt~~~~~ 46 (478)
|.=|+|.-.|..|--.....|.+.|+++|++ ...+..+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 4457777899999999999999999999986 4444443
No 454
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.23 E-value=4.1e+02 Score=28.37 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.0
Q ss_pred cceeeeccCch------hhHHHHhcCcceeccC
Q 011724 364 IGGFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 364 v~~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
.+++++|.|-| ++.+|...++|||++-
T Consensus 68 ~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 68 VGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 34488888854 7899999999999884
No 455
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=26.23 E-value=70 Score=33.19 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=25.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
|||+++-.+--| ++-|.+|+++||+||++-...
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEeccC
Confidence 577777655444 778999999999999987655
No 456
>PRK08939 primosomal protein DnaI; Reviewed
Probab=26.14 E-value=1.1e+02 Score=29.89 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=38.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
..+++.-.+|.|-..=+.+||.+|.++|..|+|+..+.+...+.
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK 200 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence 56778888888988889999999999999999999988777665
No 457
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=26.13 E-value=1.3e+02 Score=27.80 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=26.1
Q ss_pred CCCCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011724 1 MENNHKKPKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 1 ~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 46 (478)
|++++.+-..|.++++ ++.|.+ -..+|+.|+++|++|++....
T Consensus 1 ~~~~~~~~~~k~vlIt-Ga~g~i--G~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 1 MSLNLFDLTGRRALVT-GSSQGI--GYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCccccCCCCCEEEEE-CCcchH--HHHHHHHHHHcCCEEEEEeCC
Confidence 5555332222344444 334444 367899999999999877654
No 458
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=25.83 E-value=2.9e+02 Score=28.60 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEECCCCCC-CCccCCCChhhhhhhccCCCeEEe-eccChHhhhhccCcce-eeeccCch
Q 011724 298 SKNDIVEIALGLLLSEVSFVWVLRPDIVS-SDETDFLPVGFEEKIKISGRGLIV-PWCSQIDVISHSAIGG-FLTHCGWN 374 (478)
Q Consensus 298 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~~nv~v~-~~ipq~~vL~~~~v~~-~ItHGG~~ 374 (478)
...++.++-.|+.+-+.--||+-.+.... ++. .++...++.+..+++. +-..-..+|.+.+-.- +-+|-|
T Consensus 165 ~~~~l~m~~~ai~enp~a~i~~kthpdvl~gkk-----qg~lt~~~~~~r~~ll~edfnpisll~~~dkvy~~ts~mg-- 237 (671)
T COG3563 165 ASTFLLMFQTAINENPQADIWVKTHPDVLCGKK-----QGYLTQLSQQHRVHLLAEDFNPISLLQNVDKVYCVTSQMG-- 237 (671)
T ss_pred hhHHHHHHHHHHhcCCcccEEEEeCCchhcCcc-----cchhhhhccCceEEEecccCChHHHHHhcceeEEeecccc--
Confidence 46678888899999888889976544211 111 2333333356666655 5555667787776522 334444
Q ss_pred hhHHHHhcCcceeccCc
Q 011724 375 SIQESIWCSVPLLCFPL 391 (478)
Q Consensus 375 s~~Eal~~GvP~l~~P~ 391 (478)
.||+.+|+|+++..+
T Consensus 238 --feall~~~~~~~fg~ 252 (671)
T COG3563 238 --FEALLCGKPLTTFGL 252 (671)
T ss_pred --HHHHhcCCceeeecc
Confidence 599999999988765
No 459
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=25.80 E-value=1.5e+02 Score=24.19 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCccCHHHHH---HHHHHHHhCCCeEEEEeCCc
Q 011724 9 KPHAIAICYPLQGHVIPFV---NLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l---~La~~L~~rGh~Vt~~~~~~ 47 (478)
||||++++....|-...++ .|.++-+++||++.+=+...
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~ 43 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGA 43 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4788888866666444443 36666677899999766544
No 460
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=25.48 E-value=1.2e+02 Score=24.28 Aligned_cols=37 Identities=11% Similarity=-0.088 Sum_probs=27.3
Q ss_pred HhhhhccCcceeeecc---CchhhHHH---HhcCcceeccCcc
Q 011724 356 IDVISHSAIGGFLTHC---GWNSIQES---IWCSVPLLCFPLL 392 (478)
Q Consensus 356 ~~vL~~~~v~~~ItHG---G~~s~~Ea---l~~GvP~l~~P~~ 392 (478)
...+..|++.+++-.+ +.||..|. ..-|+|++++-.-
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 4567788886666666 89999996 6779999887543
No 461
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.47 E-value=1.5e+02 Score=22.02 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=27.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011724 12 AIAICYPLQGHVIPFVNLALKLASSGFTITFVN 44 (478)
Q Consensus 12 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 44 (478)
+++...++.|-..-...||..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666678888889999999999999998877
No 462
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=25.47 E-value=1.4e+02 Score=26.03 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=27.5
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEE
Q 011724 286 VLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVL 320 (478)
Q Consensus 286 ~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 320 (478)
.+|+++||-...+...++..+.+|.+.+.--++.+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 59999999998888888889999988765333433
No 463
>PRK07064 hypothetical protein; Provisional
Probab=25.32 E-value=4.4e+02 Score=27.85 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=21.5
Q ss_pred ceeeeccCch------hhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
+++++|.|-| .+.+|-..++|+|++-
T Consensus 68 ~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 68 GVALTSTGTGAGNAAGALVEALTAGTPLLHIT 99 (544)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3388998854 8899999999999883
No 464
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=25.31 E-value=78 Score=30.17 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 28 NLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 28 ~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
.+|..|++.||+|++++.....+.+.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~ 30 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALN 30 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHH
Confidence 47889999999999999875555665
No 465
>PRK07773 replicative DNA helicase; Validated
Probab=25.28 E-value=3.3e+02 Score=30.94 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=35.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhh
Q 011724 11 HAIAICYPLQGHVIPFVNLALKLAS-SGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 11 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~~ 53 (478)
=|++..-|+.|-..-.+.+|...+. .|..|.|++-+...+.+.
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 3677778999999999999999875 489999999888776654
No 466
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=25.28 E-value=84 Score=22.69 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCc
Q 011724 27 VNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 27 l~La~~L~~rGh~Vt~~~~~~ 47 (478)
+..|..|+++|++|+++=...
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567899999999999987654
No 467
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=25.24 E-value=5.4e+02 Score=27.63 Aligned_cols=135 Identities=8% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCCCCCCCccCCCChhhhhhhccCCCeEEeeccChHhhhhc
Q 011724 282 PRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPDIVSSDETDFLPVGFEEKIKISGRGLIVPWCSQIDVISH 361 (478)
Q Consensus 282 ~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~nv~v~~~ipq~~vL~~ 361 (478)
+..+.|-|-+||.. +....++....|++.+..+-+.+.+-+..++..+.+.....++
T Consensus 408 ~~~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~--------------------- 464 (577)
T PLN02948 408 KGTPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSR--------------------- 464 (577)
T ss_pred CCCCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHC---------------------
Q ss_pred cCcceeeeccCchhhHHHHhcC---cceeccCc---ccchhHHHHHhhc--------------ccCHHHHHHHHHHHhCC
Q 011724 362 SAIGGFLTHCGWNSIQESIWCS---VPLLCFPL---LTDQFTNRKLVKS--------------SITKEEVSEKINRLMSG 421 (478)
Q Consensus 362 ~~v~~~ItHGG~~s~~Eal~~G---vP~l~~P~---~~DQ~~na~rv~~--------------~~t~~~l~~~v~~ll~~ 421 (478)
.+++||.=.|.-.-+-.+.+| +|+|.+|. ..+-.+--.-+.+ ..++.-++-.|-.+-
T Consensus 465 -~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~-- 541 (577)
T PLN02948 465 -GLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGAS-- 541 (577)
T ss_pred -CCCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcC--
Q ss_pred CChHHHHHHHHHHHHHHHHHHhc
Q 011724 422 KSSDELRKNIKEVRKKLENALSA 444 (478)
Q Consensus 422 ~~~~~~r~~a~~l~~~~~~a~~~ 444 (478)
+++.+++.+..++.+++.+.+
T Consensus 542 --~~~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 542 --DPDLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred --CHHHHHHHHHHHHHHHHHHHh
No 468
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=25.20 E-value=3.9e+02 Score=25.84 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=23.6
Q ss_pred ccEEEEcCCchhhHHHHHHcCCccEEEec
Q 011724 123 MNCLVTDTFFVWSSMIAKKYNLVNISFWT 151 (478)
Q Consensus 123 pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 151 (478)
-|++|+. ..+.+.+|..+|+|+|.++.
T Consensus 254 a~l~I~n--DSGp~HlA~A~g~p~valfG 280 (322)
T PRK10964 254 AKAVVSV--DTGLSHLTAALDRPNITLYG 280 (322)
T ss_pred CCEEEec--CCcHHHHHHHhCCCEEEEEC
Confidence 7999987 45788999999999999975
No 469
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=25.17 E-value=6e+02 Score=24.17 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=54.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhhhhcCCCCCcchhccccCCCCCeEEEEcCCCCCCCCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQITKAQSNGDEDDIFAGARKAGLDIRYATVSDGLPLNFD 89 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 89 (478)
.=|++.-.|+.|-..-...|++.|.+.|.+|.++...... +. .. . +. +.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~---~~---------------~--y~---~~------ 50 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--ID---RN---------------D--YA---DS------ 50 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---T---TS---------------S--S-----G------
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cc---hh---------------h--hh---ch------
Confidence 3467777999999999999999999999999998854433 22 11 1 10 00
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHhhccCCCccEEEEcCCch------hhHHHHHHcCCccEEEecchhHH
Q 011724 90 RSLNHDQFMECLLHVFSAHVDELVGNLIQLNPEMNCLVTDTFFV------WSSMIAKKYNLVNISFWTEPALV 156 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~pD~vi~D~~~~------~~~~~A~~lgiP~v~~~~~~~~~ 156 (478)
.-.+.. ...+...++.. +. +-++||+|...+ -.+.+|+.++.++..+.......
T Consensus 51 ---~~Ek~~---R~~l~s~v~r~---ls----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e 110 (270)
T PF08433_consen 51 ---KKEKEA---RGSLKSAVERA---LS----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLE 110 (270)
T ss_dssp ---GGHHHH---HHHHHHHHHHH---HT----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HH
T ss_pred ---hhhHHH---HHHHHHHHHHh---hc----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHH
Confidence 001111 12222223322 22 248999998652 24689999999999887655543
No 470
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=25.12 E-value=3.3e+02 Score=27.08 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=38.0
Q ss_pred hhhHhHhhcCCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEECCC
Q 011724 271 ESECTQWLNTKPRGSVLYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLRPD 323 (478)
Q Consensus 271 ~~~~~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 323 (478)
.+++..|+..++ .+..|.+.......+..+.+++.|++.+...+++++++
T Consensus 55 ~~~v~~~~~~GG---T~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGD 104 (347)
T COG0205 55 REDVDDLINRGG---TFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGD 104 (347)
T ss_pred ccchhHHHhcCC---eEEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 455667776654 57666666655667788899999999999999998877
No 471
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=25.10 E-value=3.5e+02 Score=28.84 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=21.7
Q ss_pred ceeeeccCch------hhHHHHhcCcceeccC
Q 011724 365 GGFLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 365 ~~~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
+++++|.|-| ++.+|...++|||++-
T Consensus 75 gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 75 GVAVVTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred eEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3488888854 6889999999999995
No 472
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.90 E-value=1.2e+02 Score=28.87 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=25.7
Q ss_pred ceEEEEecccccC-CHHHHHHHHHHHhh--CCCeEEEEECCC
Q 011724 285 SVLYVSFGSYAHA-SKNDIVEIALGLLL--SEVSFVWVLRPD 323 (478)
Q Consensus 285 ~~Vyvs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~ 323 (478)
.+|.+||||.... ...-+..+...+++ .+..+.|+..+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4899999998854 44477788888877 588899988754
No 473
>PRK07524 hypothetical protein; Provisional
Probab=24.88 E-value=2.6e+02 Score=29.52 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.0
Q ss_pred eeeccCch------hhHHHHhcCcceecc
Q 011724 367 FLTHCGWN------SIQESIWCSVPLLCF 389 (478)
Q Consensus 367 ~ItHGG~~------s~~Eal~~GvP~l~~ 389 (478)
++.|.|-| ++.+|-..++|||++
T Consensus 68 ~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i 96 (535)
T PRK07524 68 CFIITGPGMTNIATAMGQAYADSIPMLVI 96 (535)
T ss_pred EEECCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 88888854 889999999999988
No 474
>PRK12474 hypothetical protein; Provisional
Probab=24.82 E-value=4.1e+02 Score=27.93 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.0
Q ss_pred eeeccCch------hhHHHHhcCcceeccC
Q 011724 367 FLTHCGWN------SIQESIWCSVPLLCFP 390 (478)
Q Consensus 367 ~ItHGG~~------s~~Eal~~GvP~l~~P 390 (478)
+++|.|-| .+.+|-..++|||++-
T Consensus 72 ~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~ 101 (518)
T PRK12474 72 TLLHLGPGLANGLANLHNARRAASPIVNIV 101 (518)
T ss_pred EEEccchhHhHhHHHHHHHhhcCCCEEEEe
Confidence 78887754 7778999999999884
No 475
>PRK03094 hypothetical protein; Provisional
Probab=24.82 E-value=66 Score=24.37 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 011724 26 FVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 26 ~l~La~~L~~rGh~Vt~~~~~ 46 (478)
+..|.+.|+++||+|.=+-++
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 567999999999999877553
No 476
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=24.63 E-value=1.3e+02 Score=28.93 Aligned_cols=28 Identities=11% Similarity=0.315 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHhhCCCeEEEEECCC
Q 011724 296 HASKNDIVEIALGLLLSEVSFVWVLRPD 323 (478)
Q Consensus 296 ~~~~~~~~~~~~al~~~~~~~i~~~~~~ 323 (478)
....+..+.+.+|+.+...+.||.+.++
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG 72 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGG 72 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 3445567789999999999999998876
No 477
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=24.55 E-value=3.8e+02 Score=25.87 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=22.6
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEC
Q 011724 287 LYVSFGSYAHASKNDIVEIALGLLLSEVSFVWVLR 321 (478)
Q Consensus 287 Vyvs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 321 (478)
|||+.|.... .......++.+|.+.|+.+.++++
T Consensus 3 i~~~~g~~~g-~~~~~~~La~~L~~~g~eV~vv~~ 36 (348)
T TIGR01133 3 VVLAAGGTGG-HIFPALAVAEELIKRGVEVLWLGT 36 (348)
T ss_pred EEEEeCccHH-HHhHHHHHHHHHHhCCCEEEEEeC
Confidence 5666665542 222445789999999998877764
No 478
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=24.48 E-value=80 Score=26.63 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 28 NLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 28 ~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
-+|..|++.||+|++++.....+.+.
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~ 37 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIK 37 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHH
T ss_pred HHHHHHHHCCCceEEEEccccHHhhh
Confidence 47889999999999999988545565
No 479
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=24.40 E-value=1.1e+02 Score=22.71 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 011724 26 FVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 26 ~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
-+.+|..|++.|.+||++....
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHhCcEEEEEeccc
Confidence 4788999999999999998755
No 480
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=24.28 E-value=1.3e+02 Score=28.90 Aligned_cols=40 Identities=5% Similarity=-0.009 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCc-cCHH---HHHHHHHHHHhCCCeEEEEeCCc
Q 011724 8 PKPHAIAICYPLQ-GHVI---PFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 8 ~~~~il~~~~~~~-GH~~---p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
+++||++++.+.. =|-. -...+.++|.++||+|.++....
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~ 46 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE 46 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc
Confidence 3469988883322 2444 56789999999999999996553
No 481
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=24.25 E-value=56 Score=30.70 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=34.8
Q ss_pred cCcceeeeccCchhhHHHHhc----CcceeccCcccchhHHHHHhhc---ccCHHHHHHHHHHHhC
Q 011724 362 SAIGGFLTHCGWNSIQESIWC----SVPLLCFPLLTDQFTNRKLVKS---SITKEEVSEKINRLMS 420 (478)
Q Consensus 362 ~~v~~~ItHGG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~rv~~---~~t~~~l~~~v~~ll~ 420 (478)
+++ +|+-||-||++.|+.. ++|++.+-.. ++-. ....+++.+++.++..
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~G--------~lGFL~~~~~~~e~~~~l~~~~~ 81 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNRG--------SVGFLMNEYSEDDLLERIAAAEP 81 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeCC--------CCCcccCCCCHHHHHHHHHHhhc
Confidence 566 9999999999988654 6787776552 2221 2456778888888775
No 482
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=24.24 E-value=1.7e+02 Score=27.97 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIH 49 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 49 (478)
+..|+|+..+|-|-..-...||..|++.|++|.++..+.++
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 34556666778899999999999999999999999988654
No 483
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=24.21 E-value=96 Score=30.85 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhh
Q 011724 8 PKPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHH 50 (478)
Q Consensus 8 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 50 (478)
++++|+++-.+-.| +..|-.|+++|++|+++-......
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCccCC
Confidence 45899999877667 899999999999999998666443
No 484
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=24.14 E-value=61 Score=32.81 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=23.0
Q ss_pred CccCHHHHHH---HHHHHHhCCCeEEEEeCCc
Q 011724 19 LQGHVIPFVN---LALKLASSGFTITFVNTHS 47 (478)
Q Consensus 19 ~~GH~~p~l~---La~~L~~rGh~Vt~~~~~~ 47 (478)
-.||+.|++. +|+.++.+||+|.|++..+
T Consensus 15 HlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtD 46 (391)
T PF09334_consen 15 HLGHLYPYLAADVLARYLRLRGHDVLFVTGTD 46 (391)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CCChhHHHHHHHHHHHHHhhcccceeeEEecc
Confidence 4599998775 7888888999999999754
No 485
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=23.95 E-value=1.7e+02 Score=26.22 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=27.1
Q ss_pred HHHHHHHhhccCCCccEEEEcCCc-hhhHHHHHHcCCccEEEecch
Q 011724 109 VDELVGNLIQLNPEMNCLVTDTFF-VWSSMIAKKYNLVNISFWTEP 153 (478)
Q Consensus 109 ~~~ll~~l~~~~~~pD~vi~D~~~-~~~~~~A~~lgiP~v~~~~~~ 153 (478)
+.++++.... +..++|...+. +.+..+|+++|+|.|.+.|..
T Consensus 49 l~~~i~~~~~---~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 49 LEQLIEELKP---ENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHhCCC---CCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 3345555431 22355555444 788889999999999987653
No 486
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=23.93 E-value=1.2e+02 Score=20.04 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011724 407 TKEEVSEKINRLMSGKSSDELRKNIKE 433 (478)
Q Consensus 407 t~~~l~~~v~~ll~~~~~~~~r~~a~~ 433 (478)
|+++|..||..+..|+ -.+++.|++
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~ 25 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKK 25 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHH
Confidence 5789999999999731 556665554
No 487
>PLN02240 UDP-glucose 4-epimerase
Probab=23.93 E-value=1.3e+02 Score=29.56 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNT 45 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 45 (478)
+++|++. ++.|.+- ..|++.|.++||+|+.+..
T Consensus 5 ~~~vlIt--GatG~iG--~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVT--GGAGYIG--SHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEEE--CCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 3566654 5666653 3568899999999998863
No 488
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=23.90 E-value=1.8e+02 Score=25.94 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=35.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
|+||++--.++.|-.+ -+.|-+.|++.|+++.++.+...+..+.
T Consensus 2 ~~riivgisGASG~iy-gvrlLe~L~~~~~e~hlviS~~a~~~~~ 45 (191)
T COG0163 2 MKRIIVGISGASGAIY-GVRLLEVLRELGVETHLVISKAAKKTLK 45 (191)
T ss_pred CcEEEEEEeccccHHH-HHHHHHHHHhcCceEEEEEcHHHHHHHH
Confidence 5778777777777555 5678899999999999999998887765
No 489
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=23.87 E-value=1.4e+02 Score=25.70 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=26.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
.+|+++-.+..| ...++.|.+.|++|+++.+ ...+.+.
T Consensus 14 ~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp-~~~~~l~ 51 (157)
T PRK06719 14 KVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSP-EICKEMK 51 (157)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcC-ccCHHHH
Confidence 677777644333 6789999999999999964 4334443
No 490
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=23.84 E-value=1.1e+02 Score=31.32 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=25.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 9 KPHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 9 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
+|||.|+-.+-.| +.+|..|+++||+|+.+-...
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCCH
Confidence 5888888554433 578999999999999886533
No 491
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=23.82 E-value=1.4e+02 Score=26.01 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=28.3
Q ss_pred CEEEEEcCCCccCHHHHHH-HHHHHHhCCCeEEEEeCCch
Q 011724 10 PHAIAICYPLQGHVIPFVN-LALKLASSGFTITFVNTHSI 48 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~-La~~L~~rGh~Vt~~~~~~~ 48 (478)
||+|++=..-.|...=.-. ||..|.++||+|.+.-....
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~ 40 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV 40 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh
Confidence 5677666566677766554 78899999999998755443
No 492
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.77 E-value=91 Score=30.46 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=26.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTH 46 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 46 (478)
|||.++-.+..| ..+|..|++.||+|+++...
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 578888877776 46789999999999999874
No 493
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.73 E-value=2e+02 Score=23.21 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=30.6
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCchhhhhh
Q 011724 19 LQGHVIPFVNLALKLASSGFTITFVNTHSIHHQIT 53 (478)
Q Consensus 19 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 53 (478)
..|+-..++.+++.++++|..|..+|........+
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 66788999999999999999999999887777665
No 494
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=23.71 E-value=1.2e+02 Score=27.01 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=22.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHS 47 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 47 (478)
|||.++ |.||+- +.+|-.|++.||+|+.+=...
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCCh
Confidence 677777 455553 678889999999999886655
No 495
>PRK13337 putative lipid kinase; Reviewed
Probab=23.70 E-value=2.8e+02 Score=26.78 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=21.5
Q ss_pred eeeeccCchhhHHHHhc------CcceeccCcc
Q 011724 366 GFLTHCGWNSIQESIWC------SVPLLCFPLL 392 (478)
Q Consensus 366 ~~ItHGG~~s~~Eal~~------GvP~l~~P~~ 392 (478)
.+|.-||-||+.|++-. ..|+-++|..
T Consensus 60 ~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred EEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 39999999999998752 3578888864
No 496
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=23.68 E-value=3.7e+02 Score=26.80 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEECCC
Q 011724 298 SKNDIVEIALGLLLSEVSFVWVLRPD 323 (478)
Q Consensus 298 ~~~~~~~~~~al~~~~~~~i~~~~~~ 323 (478)
-+..++.++.+|.+.|+.+.+.+...
T Consensus 9 ~p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 9 FPGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred CchhHHHHHHHHHHCCCEEEEEecCC
Confidence 34557889999999999988776544
No 497
>PRK05246 glutathione synthetase; Provisional
Probab=23.61 E-value=99 Score=30.17 Aligned_cols=43 Identities=7% Similarity=0.076 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 011724 9 KPHAIAICYPLQ---GHVIPFVNLALKLASSGFTITFVNTHSIHHQ 51 (478)
Q Consensus 9 ~~~il~~~~~~~---GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 51 (478)
+|||+|+.-|-. -......+|+++-+++||+|.++++....-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~ 46 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLR 46 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEEE
Confidence 378988886522 3446678899999999999999999876543
No 498
>PRK13057 putative lipid kinase; Reviewed
Probab=23.59 E-value=2.9e+02 Score=26.40 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=24.4
Q ss_pred hccCcceeeeccCchhhHHHH----hcCcceeccCcc
Q 011724 360 SHSAIGGFLTHCGWNSIQESI----WCSVPLLCFPLL 392 (478)
Q Consensus 360 ~~~~v~~~ItHGG~~s~~Eal----~~GvP~l~~P~~ 392 (478)
...++ +|--||-||+.|++ ..++|+-++|..
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~G 83 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPLG 83 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECCC
Confidence 34455 99999999999885 347899999973
No 499
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=23.59 E-value=78 Score=28.90 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHHHHHhhccCCCccEEEEcCCchh---hHHHHH----HcCCccEEEe
Q 011724 109 VDELVGNLIQLNPEMNCLVTDTFFVW---SSMIAK----KYNLVNISFW 150 (478)
Q Consensus 109 ~~~ll~~l~~~~~~pD~vi~D~~~~~---~~~~A~----~lgiP~v~~~ 150 (478)
+..+++.+. ..||+|++|.+... .+-+|. .+++|+|.+.
T Consensus 83 l~~~~~~l~---~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 83 LLEALEKLK---TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHhCC---CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 334455555 46999999987633 333444 4458888875
No 500
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=23.43 E-value=5.1e+02 Score=26.20 Aligned_cols=37 Identities=19% Similarity=0.002 Sum_probs=27.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 011724 10 PHAIAICYPLQGHVIPFVNLALKLASSGFTITFVNTHSIHHQ 51 (478)
Q Consensus 10 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 51 (478)
|||+++-.+..+ ..|++++++.|+.+++++.+.+...
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~ 37 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQSPLVKYVYVAPGNAGT 37 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhCCCccEEEEECCCHHH
Confidence 688888877664 4678888888888888877665443
Done!