Query 011725
Match_columns 478
No_of_seqs 140 out of 1364
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:33:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 100.0 1.1E-96 2E-101 795.9 48.8 455 5-465 53-522 (545)
2 PRK12849 groEL chaperonin GroE 100.0 1.6E-96 3E-101 792.5 48.8 455 5-466 52-521 (542)
3 PRK14104 chaperonin GroEL; Pro 100.0 1.8E-96 4E-101 792.6 47.8 455 5-465 53-522 (546)
4 PTZ00114 Heat shock protein 60 100.0 5.1E-96 1E-100 791.7 48.9 459 5-469 64-541 (555)
5 PRK00013 groEL chaperonin GroE 100.0 6.7E-96 1E-100 787.6 49.2 455 5-465 52-521 (542)
6 cd03344 GroEL GroEL_like type 100.0 1.6E-95 3E-100 782.3 49.4 455 5-466 50-519 (520)
7 TIGR02348 GroEL chaperonin Gro 100.0 1.4E-95 3E-100 783.8 49.0 456 5-467 51-521 (524)
8 CHL00093 groEL chaperonin GroE 100.0 1.4E-95 3E-100 784.8 47.2 457 5-465 52-522 (529)
9 PRK12850 groEL chaperonin GroE 100.0 3E-95 6E-100 783.4 48.9 458 5-465 53-521 (544)
10 PRK12851 groEL chaperonin GroE 100.0 1.2E-94 2.6E-99 778.3 48.2 454 5-465 53-521 (541)
11 PLN03167 Chaperonin-60 beta su 100.0 1.2E-94 2.7E-99 783.2 46.2 455 5-466 108-579 (600)
12 KOG0356 Mitochondrial chaperon 100.0 1.2E-84 2.6E-89 667.1 33.4 443 7-454 68-518 (550)
13 TIGR02347 chap_CCT_zeta T-comp 100.0 2.1E-77 4.5E-82 644.1 40.2 407 5-472 58-530 (531)
14 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 6.1E-78 1.3E-82 642.7 35.3 394 5-465 54-480 (484)
15 cd03343 cpn60 cpn60 chaperonin 100.0 6.1E-77 1.3E-81 640.9 40.3 400 5-465 57-514 (517)
16 TIGR02339 thermosome_arch ther 100.0 1.6E-76 3.5E-81 637.5 40.2 400 5-465 58-517 (519)
17 COG0459 GroL Chaperonin GroEL 100.0 2.6E-78 5.5E-83 644.7 24.1 435 6-469 54-515 (524)
18 cd03335 TCP1_alpha TCP-1 (CTT 100.0 3.3E-76 7.2E-81 635.9 40.2 405 5-465 50-523 (527)
19 TIGR02340 chap_CCT_alpha T-com 100.0 6.5E-76 1.4E-80 634.6 40.4 412 5-472 54-534 (536)
20 TIGR02342 chap_CCT_delta T-com 100.0 6E-76 1.3E-80 632.3 38.3 406 5-465 51-514 (517)
21 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.6E-75 3.5E-80 630.1 41.0 405 5-467 58-519 (522)
22 cd03338 TCP1_delta TCP-1 (CTT 100.0 6.1E-76 1.3E-80 632.7 36.5 407 5-465 50-513 (515)
23 TIGR02343 chap_CCT_epsi T-comp 100.0 1.8E-75 3.8E-80 630.0 39.2 403 5-468 69-532 (532)
24 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.7E-75 3.6E-80 630.3 38.6 400 5-465 65-525 (526)
25 TIGR02345 chap_CCT_eta T-compl 100.0 4.1E-75 8.8E-80 626.5 39.1 404 5-466 59-518 (522)
26 TIGR02344 chap_CCT_gamma T-com 100.0 1.2E-74 2.6E-79 623.8 38.9 400 5-465 58-519 (525)
27 cd03336 TCP1_beta TCP-1 (CTT o 100.0 5.9E-74 1.3E-78 616.9 40.8 401 5-467 57-513 (517)
28 TIGR02346 chap_CCT_theta T-com 100.0 1.2E-74 2.7E-79 623.3 35.6 400 5-466 60-518 (531)
29 PTZ00212 T-complex protein 1 s 100.0 5E-74 1.1E-78 619.2 34.8 401 5-467 69-525 (533)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 7.7E-74 1.7E-78 610.8 35.6 383 5-465 58-478 (480)
31 TIGR02341 chap_CCT_beta T-comp 100.0 6.6E-73 1.4E-77 608.4 36.8 399 5-465 58-512 (519)
32 KOG0361 Chaperonin complex com 100.0 7.1E-74 1.5E-78 563.5 25.3 394 6-457 63-507 (543)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 6.6E-72 1.4E-76 594.8 37.3 385 5-465 50-469 (472)
34 cd00309 chaperonin_type_I_II c 100.0 1.8E-71 3.8E-76 591.3 39.2 375 5-457 50-450 (464)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.5E-66 5.5E-71 553.7 36.2 400 5-465 31-481 (485)
36 KOG0363 Chaperonin complex com 100.0 4.6E-66 1E-70 505.4 29.2 398 6-465 63-516 (527)
37 KOG0358 Chaperonin complex com 100.0 3E-66 6.5E-71 508.8 21.7 412 6-465 69-531 (534)
38 KOG0360 Chaperonin complex com 100.0 2.2E-61 4.8E-66 485.9 23.2 408 6-470 62-540 (545)
39 KOG0364 Chaperonin complex com 100.0 3.5E-59 7.5E-64 466.1 21.9 402 6-468 62-521 (527)
40 KOG0362 Chaperonin complex com 100.0 1.7E-57 3.7E-62 460.6 29.7 406 5-465 68-518 (537)
41 KOG0359 Chaperonin complex com 100.0 2.4E-58 5.2E-63 459.6 22.1 394 5-460 59-502 (520)
42 KOG0357 Chaperonin complex com 100.0 5.4E-54 1.2E-58 417.3 15.7 309 15-469 71-397 (400)
43 cd03333 chaperonin_like chaper 100.0 1.4E-28 3.1E-33 235.3 20.0 192 95-358 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 2.1E-26 4.6E-31 227.5 21.2 198 108-359 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 98.8 3.4E-08 7.4E-13 113.1 13.7 204 110-368 336-577 (1598)
46 COG0459 GroL Chaperonin GroEL 97.6 0.00012 2.7E-09 79.3 6.6 90 186-291 259-355 (524)
47 PTZ00212 T-complex protein 1 s 46.5 44 0.00095 36.7 6.4 46 115-160 177-223 (533)
48 PRK13600 putative ribosomal pr 42.7 61 0.0013 26.5 5.1 54 189-252 21-74 (84)
49 TIGR02341 chap_CCT_beta T-comp 38.9 66 0.0014 35.2 6.3 44 116-160 167-212 (519)
50 TIGR02345 chap_CCT_eta T-compl 36.0 14 0.00031 40.4 0.6 60 196-256 246-314 (522)
51 smart00574 POX domain associat 32.8 63 0.0014 29.0 4.0 42 336-377 84-126 (140)
52 COG3962 Acetolactate synthase 31.1 25 0.00054 37.8 1.4 38 342-379 216-253 (617)
53 PRK06683 hypothetical protein; 30.4 1.3E+02 0.0027 24.4 5.1 53 190-252 20-72 (82)
54 PF01985 CRS1_YhbY: CRS1 / Yhb 27.0 1.9E+02 0.004 23.4 5.6 67 188-256 7-75 (84)
55 PF07526 POX: Associated with 26.5 75 0.0016 28.6 3.5 41 337-377 85-126 (140)
56 PRK13602 putative ribosomal pr 24.7 1.7E+02 0.0037 23.6 5.0 53 190-252 20-72 (82)
57 PRK13601 putative L7Ae-like ri 24.6 1.8E+02 0.0039 23.6 5.0 53 190-252 17-69 (82)
58 CHL00202 argB acetylglutamate 21.8 1.4E+02 0.0031 29.8 4.9 48 318-367 18-67 (284)
59 PLN02512 acetylglutamate kinas 21.8 1.9E+02 0.0041 29.4 5.8 56 318-378 42-99 (309)
60 TIGR01166 cbiO cobalt transpor 20.8 1.1E+02 0.0023 28.2 3.5 42 167-208 142-188 (190)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-96 Score=795.89 Aligned_cols=455 Identities=35% Similarity=0.538 Sum_probs=432.8
Q ss_pred HHHHhhhcccc----CcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~----~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~ 79 (478)
..||||+|+++ ||.++++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.
T Consensus 53 G~TIlk~i~~~~~~~~p~akll------~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (545)
T PRK12852 53 GVTVAKEIELEDKFENMGAQMV------REVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAA 126 (545)
T ss_pred HHHHHHHccCCCcccChHHHHH------HHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 57999999995 8989998 5888999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCcccc
Q 011725 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~ 159 (478)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.++++++.|+++.|++..+++++++|+.|++||.+|||++
T Consensus 127 ~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~ 206 (545)
T PRK12852 127 VVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVT 206 (545)
T ss_pred HHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCcccc
Confidence 99999999999988788999999999888999999999999999999999999888767899999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhh
Q 011725 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk 239 (478)
++++|+.+++||+|+++|.+|+++++++|+|+.+.++|+||||++++|+++++++|+.|+.+|.++|++||+|+||++|+
T Consensus 207 ~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~ 286 (545)
T PRK12852 207 NAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (545)
T ss_pred ccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 011725 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (478)
Q Consensus 240 ~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (478)
++|+|||++|||++++++.+.+++++++++||+|++|+++++++++++|+++++.++.|+++|+++++++.+ ++|+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (545)
T PRK12852 287 AMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQ 366 (545)
T ss_pred hHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999987777899999999999999999999999999999999999999999999999876 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011725 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (478)
Q Consensus 316 eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~~~~~e~~gi~~~a~A 395 (478)
|||+||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|..|++++..++++|+|+++|++|
T Consensus 367 ~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 446 (545)
T PRK12852 367 ERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKA 446 (545)
T ss_pred HHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987788999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 396 L~~ip~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
|+.|||+||+|||+|+.++ .+|++..++++|||+.+|+++||++.|||||+.||.+++..+. +|+++.++
T Consensus 447 L~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI 522 (545)
T PRK12852 447 LEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMV 522 (545)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 9999999999999999999 9998755678999999999999999999999999997766554 66677766
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.6e-96 Score=792.49 Aligned_cols=455 Identities=39% Similarity=0.547 Sum_probs=432.9
Q ss_pred HHHHhhhccccCc----ccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~~p----~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~ 79 (478)
..||||+|+++|| +|+++ +++|++||+|+||||||+|+||++||+++++|++ |+||+.|++||++|++.
T Consensus 52 GaTIlk~i~~~hp~~~~~a~ll------~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~ 125 (542)
T PRK12849 52 GVSIAKEIELEDPFENLGAQLV------KEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEA 125 (542)
T ss_pred HHHHHHHcccCCccHhHHHHHH------HHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4799999999999 78887 5888999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCcccc
Q 011725 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~ 159 (478)
++++|+++++|+++.++|.++|++|+++++.+++++++|+..+++++.+.++.|+++.|++++++|++|++||.+|||.+
T Consensus 126 ~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~ 205 (542)
T PRK12849 126 VVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVT 205 (542)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccc
Confidence 99999999999988889999999999989999999999999999888889999999877799999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhh
Q 011725 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk 239 (478)
++++++..++||+|+++|++|++++++.++++++.++|+||||++++|+++++++|+.|+++|.++|++||+|+||++|+
T Consensus 206 ~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~ 285 (542)
T PRK12849 206 DPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 285 (542)
T ss_pred cccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhH
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 011725 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (478)
Q Consensus 240 ~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (478)
++|+|||.+|||+++++..+.+++++++++||+|++|++++++|++++|++++++++.|+++|+++++++++ ++|+
T Consensus 286 ~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~ 365 (542)
T PRK12849 286 AMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQ 365 (542)
T ss_pred hHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999999988777899999999999999999999999999999999999999999999999877 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011725 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (478)
Q Consensus 316 eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~~~~~e~~gi~~~a~A 395 (478)
|||+||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|..|++|+..++++|+|+++|++|
T Consensus 366 eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~A 445 (542)
T PRK12849 366 ERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRA 445 (542)
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999984489999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhccccc
Q 011725 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVH 466 (478)
Q Consensus 396 L~~ip~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~ 466 (478)
|+.||++||+|||+|+.++ .+|++.. .++|||+.+|+++||++.|||||+.||.+++..+. +|+++.++.
T Consensus 446 l~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~ 521 (542)
T PRK12849 446 LEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVA 521 (542)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 9999999999999999999 9998754 57999999999999999999999999997766554 666777663
No 3
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.8e-96 Score=792.61 Aligned_cols=455 Identities=37% Similarity=0.548 Sum_probs=434.0
Q ss_pred HHHHhhhcccc----CcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~----~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~ 79 (478)
..||||+|+++ ||.++++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.
T Consensus 53 G~tIlk~i~~~d~~~~pgakll------~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (546)
T PRK14104 53 GVTVAKEIELEDKFENMGAQMV------REVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEA 126 (546)
T ss_pred HHHHHHHhcCCCcccChHHHHH------HHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Confidence 47999999999 9999998 5888999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCcccc
Q 011725 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~ 159 (478)
+++.|+++++|+++.+++.++|++|+++++.+|+++++|+.++|.+|.|.++.++++.+++++++|++|++||.||||++
T Consensus 127 ~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~ 206 (546)
T PRK14104 127 VVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVT 206 (546)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhc
Confidence 99999999999987788999999999989999999999999999999999998887767899999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhh
Q 011725 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk 239 (478)
+|+.++.++++|+|+++|.+++++++++|+++.+.++|+||||++++|+++|+++|..|++++.++|+|||+|+||++|+
T Consensus 207 ~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~ 286 (546)
T PRK14104 207 NADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (546)
T ss_pred CcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 011725 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (478)
Q Consensus 240 ~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (478)
++|+|||++|||++++++.+..++++++++||+|++|+++++++++++|+++++.++.|+++|+++++++++ ++|+
T Consensus 287 ~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (546)
T PRK14104 287 AMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQ 366 (546)
T ss_pred HHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999998888899999999999999999999999999999999999999999999999887 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011725 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (478)
Q Consensus 316 eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~~~~~e~~gi~~~a~A 395 (478)
|||+||+|++|||+|||+|+++++|+||+++||+|++++++++|||||||++|+++|..|+++...++++++|+++|++|
T Consensus 367 eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 446 (546)
T PRK14104 367 ERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKA 446 (546)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999865689999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 396 L~~ip~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
|+.||++||+|||+|+.++ .+|++.+.+++|||+.+|+++||++.|||||+.||.+++..+. +|+++.+|
T Consensus 447 l~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I 522 (546)
T PRK14104 447 LSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMV 522 (546)
T ss_pred HHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9998755567999999999999999999999999998777665 55566666
No 4
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=5.1e-96 Score=791.69 Aligned_cols=459 Identities=38% Similarity=0.560 Sum_probs=433.2
Q ss_pred HHHHhhhccccCc----ccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~~p----~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~ 79 (478)
..||||+|+++|| .++++ +++|++||+++||||||+|+||++||+++.+|++ |+||..|++||++|.+.
T Consensus 64 G~TIlk~i~~~~p~~~~~a~ll------~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~ 137 (555)
T PTZ00114 64 GVTVAKAIEFSDRFENVGAQLI------RQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKV 137 (555)
T ss_pred hHHHHHhcCcCCcchhHHHHHH------HHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4699999999999 88887 5888999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCcccc
Q 011725 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~ 159 (478)
++++|+++++|+++.++|.++|++|+++++.+++++++|+.+++++|.|.+++|+++.+++++++|++|+++|.+|||++
T Consensus 138 ~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~ 217 (555)
T PTZ00114 138 VLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVT 217 (555)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEecccccccccc
Confidence 99999999999988889999999999888999999999999999988899999999887669999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhh
Q 011725 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk 239 (478)
++++|+.+++||+|+++|.+|+++++++++++++.++|+||+|++++|+++++++|..|+++|.++|++||+|+||++++
T Consensus 218 ~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~ 297 (555)
T PTZ00114 218 NEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRK 297 (555)
T ss_pred ccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCC-CCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHH
Q 011725 240 AIMEDLAILTGGQVLTGG-SGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKL 314 (478)
Q Consensus 240 ~~le~la~~tGa~ii~~~-~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l 314 (478)
++|+|||++|||+++++. .+..++++++++||+|++|++++++++++++++++++|++|+++|+.+++++++ ++|
T Consensus 298 ~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l 377 (555)
T PTZ00114 298 DILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKL 377 (555)
T ss_pred HHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999997 777788999999999999999999999999999999999999999999998875 999
Q ss_pred HHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcC---CChhHHHHHHH
Q 011725 315 KDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT---TNSDQKIGVQI 391 (478)
Q Consensus 315 ~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~---~~~~e~~gi~~ 391 (478)
+|||+||+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|..|++++. .++++|+|+++
T Consensus 378 ~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~ 457 (555)
T PTZ00114 378 KERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKI 457 (555)
T ss_pred HHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999874 37999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 392 VQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 392 ~a~AL~~ip~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
|++||+.||++||+|||+|+.++ .+|++.+++++|||+.+|+++||++.|||||+.||.+++..+. +|+++.++
T Consensus 458 ~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI 537 (555)
T PTZ00114 458 VRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAI 537 (555)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999 9997745678999999999999999999999999997776655 55577766
Q ss_pred cCCC
Q 011725 466 HGGS 469 (478)
Q Consensus 466 ~~~~ 469 (478)
....
T Consensus 538 ~~~~ 541 (555)
T PTZ00114 538 VDLP 541 (555)
T ss_pred HhCC
Confidence 4433
No 5
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.7e-96 Score=787.57 Aligned_cols=455 Identities=37% Similarity=0.527 Sum_probs=430.4
Q ss_pred HHHHhhhccccCcc----cccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTT----GTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~~p~----~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~ 79 (478)
..||||+|+++||+ ++++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.
T Consensus 52 G~tIlk~i~~~hp~~~~~akll------~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~ 125 (542)
T PRK00013 52 GVTVAKEIELEDPFENMGAQLV------KEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEA 125 (542)
T ss_pred HHHHHHHccCCCchhhHHHHHH------HHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 57999999999995 7666 6889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCcccc
Q 011725 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~ 159 (478)
++++|+++++|+++.++|.++|++|+++++.+++++++|+..++++|.|.|+.+....+++++++|++|++||.+|||.+
T Consensus 126 ~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~ 205 (542)
T PRK00013 126 AVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVT 205 (542)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccc
Confidence 99999999999988889999999999889999999999999999888888887665667899999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhh
Q 011725 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk 239 (478)
++++++..++||+|+++|++|++++++.++++++.++|+||||++++|+++++++|+.|+++|.++|++||+|+||++|+
T Consensus 206 ~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~ 285 (542)
T PRK00013 206 DPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRK 285 (542)
T ss_pred cccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 011725 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (478)
Q Consensus 240 ~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (478)
++|+|||++|||++++++.|.+++++++++||+|++|++++++|+|++++++++++..|+++|+++++++++ ++|+
T Consensus 286 ~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 365 (542)
T PRK00013 286 AMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQ 365 (542)
T ss_pred hhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 999999999999999988787899999999999999999999999999999999999999999999999877 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011725 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (478)
Q Consensus 316 eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~~~~~e~~gi~~~a~A 395 (478)
|||+||+|+++||+|||+|+.+++|+||+++||+|++|+++++|+|||||++|+++|.+|++|...++++|+|+++|++|
T Consensus 366 eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 445 (542)
T PRK00013 366 ERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRA 445 (542)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999943489999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 396 L~~ip~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
|+.|||+||+|||+|+.++ .+|++..++++|||+.+|++.||++.|||||+.||++++..+. +|+++.++
T Consensus 446 l~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI 521 (542)
T PRK00013 446 LEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVV 521 (542)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9998754568999999999999999999999999997776655 55566666
No 6
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.6e-95 Score=782.33 Aligned_cols=455 Identities=40% Similarity=0.571 Sum_probs=431.5
Q ss_pred HHHHhhhccccCc----ccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~~p----~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~ 79 (478)
..||||+|+++|| .++++ +++|++||+|+||||||+++||++||++++++++ |+||..|++||+.|.+.
T Consensus 50 G~tIlk~i~~~hp~~~~~a~ll------~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~ 123 (520)
T cd03344 50 GVTVAKEIELEDPFENMGAQLV------KEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEA 123 (520)
T ss_pred HHHHHHHcccCCcchhHHHHHH------HHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 4699999999999 66666 6888999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCcccc
Q 011725 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~ 159 (478)
++++|+++++|+++.++|.++|++|+++++.+++++++|+..++.++.|.++.|+++.|++++++|++|++||.+|+|.+
T Consensus 124 ~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~ 203 (520)
T cd03344 124 VVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVT 203 (520)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCcccc
Confidence 99999999999998899999999999999999999999999999888899999999877799999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhh
Q 011725 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk 239 (478)
+|++++.+++||+|+++|++++++++++++++++.++|+||||++++|+++++++|..|++++.+++++||+|++|++++
T Consensus 204 ~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~ 283 (520)
T cd03344 204 DPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRK 283 (520)
T ss_pred CcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 011725 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (478)
Q Consensus 240 ~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (478)
++|+|||++|||++++++.+.+++++++++||+|++|++++++++|+++++++++++.|+++|+++++++++ ++|+
T Consensus 284 ~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 363 (520)
T cd03344 284 AMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQ 363 (520)
T ss_pred HHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999987777889999999999999999999999999999999999999999999999876 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011725 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (478)
Q Consensus 316 eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~~~~~e~~gi~~~a~A 395 (478)
||++||+|++|||+|||+|+.+++|+||+++||+|++|+++++|+|||||++|+++|++|++++..++++|+|+++|++|
T Consensus 364 eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~A 443 (520)
T cd03344 364 ERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRA 443 (520)
T ss_pred HHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987789999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhccccc
Q 011725 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVH 466 (478)
Q Consensus 396 L~~ip~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~ 466 (478)
|+.||++||+|||+|+.++ ++|++..+ ++|||+.+|+++||++.|||||+.||.+++..+. +++++.+|.
T Consensus 444 l~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 444 LEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 9999999999999999999 99987544 8999999999999999999999999998777665 444555553
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.4e-95 Score=783.81 Aligned_cols=456 Identities=36% Similarity=0.532 Sum_probs=430.8
Q ss_pred HHHHhhhccccCc----ccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~~p----~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~ 79 (478)
..||||+|+++|| .++++ +++|++||+|+||||||+++||++||+++.+|++ |+||+.|++||++|.+.
T Consensus 51 G~tIlk~i~~~hp~~~~~akll------~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~ 124 (524)
T TIGR02348 51 GVTVAKEIELEDKFENMGAQLV------KEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEA 124 (524)
T ss_pred HHHHHHHccCCChhhHHHHHHH------HHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 5799999999999 67766 6889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCcccc
Q 011725 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~ 159 (478)
++++|+++++|+++.++|.++|++|+++++++++++++|+..+++++.|.++.|++..+++++++|++|++||.+|||.+
T Consensus 125 ~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~ 204 (524)
T TIGR02348 125 AVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVT 204 (524)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCccccc
Confidence 99999999999988889999999999989999999999999999988899988888878899999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhh
Q 011725 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk 239 (478)
++++++..++||+|+++|++|+++++++++++.+.++|+||||++++|+++++++|+.|+++|+++|++||+|+||++|+
T Consensus 205 ~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~ 284 (524)
T TIGR02348 205 DAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRK 284 (524)
T ss_pred CccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 011725 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (478)
Q Consensus 240 ~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (478)
++|+|||++|||++++.+.+++++++++++||+|+.|+++++++++++|+++++++..|+++|+++++++++ ++|+
T Consensus 285 ~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~ 364 (524)
T TIGR02348 285 AMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQ 364 (524)
T ss_pred hhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999988777899999999999999999999999999999999999999999999999877 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011725 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (478)
Q Consensus 316 eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~~~~~e~~gi~~~a~A 395 (478)
|||+||+|+++||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|..|++....++++|+|+++|++|
T Consensus 365 eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~A 444 (524)
T TIGR02348 365 ERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEGLKGDNEDEAIGIDIVKRA 444 (524)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998333488999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----HhhhcccccC
Q 011725 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVHG 467 (478)
Q Consensus 396 L~~ip~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~~ 467 (478)
|+.||++||+|||+|+.++ ++|++. +.++|||+.+|+++||++.|||||+.||.+++..+. +|+++.++..
T Consensus 445 L~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~ 521 (524)
T TIGR02348 445 LEAPLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVAD 521 (524)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 9999999999999999999 999875 335999999999999999999999999997776554 5667777643
No 8
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.4e-95 Score=784.78 Aligned_cols=457 Identities=32% Similarity=0.487 Sum_probs=431.6
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +.+.+++|.+|++++||||||+||||++||++|++|++ |+||+.|++||++|.+.+++.
T Consensus 52 G~tIlk~i~~~hp~a~~g--~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~ 129 (529)
T CHL00093 52 GVTIAKEIELEDHIENTG--VALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQ 129 (529)
T ss_pred HHHHHHHccCcCHHHHHH--HHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999988 77788998999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCcccccccc
Q 011725 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (478)
Q Consensus 84 L~~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~~~~~ 163 (478)
|+++++|+++.++|.+||++|+++++.||+++++|+.+++++|.|.++.|+...+++++++|++|++||.+|||+++|++
T Consensus 130 L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~ 209 (529)
T CHL00093 130 IAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTER 209 (529)
T ss_pred HHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCcc
Confidence 99999999888899999999999999999999999999998898888887766678999999999999999999999999
Q ss_pred ceeeecCcEEEEeccccCCH-HHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHH
Q 011725 164 KECVLDGALVLIYDTKISNS-NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM 242 (478)
Q Consensus 164 ~~~~l~~p~Il~~d~~i~~~-~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~l 242 (478)
|..+++||+|+++|++|+.. .+++++++.+.++|+||||++++|+++++++|+.|+.++.++|++||+|++|++|+++|
T Consensus 210 ~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l 289 (529)
T CHL00093 210 MEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAML 289 (529)
T ss_pred ceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHH
Confidence 99999999999999999987 78999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHH
Q 011725 243 EDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRL 318 (478)
Q Consensus 243 e~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~eRl 318 (478)
+|||++|||++++++.|.+++++++++||+|++|++.++++++++ .++++.+..||..++++++.+++ ++|+|||
T Consensus 290 ~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~ 368 (529)
T CHL00093 290 EDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERL 368 (529)
T ss_pred HHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 999999999999988888899999999999999999999999998 56789999999999999998877 9999999
Q ss_pred hhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcC--CChhHHHHHHHHHHHH
Q 011725 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT--TNSDQKIGVQIVQNAL 396 (478)
Q Consensus 319 a~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~--~~~~e~~gi~~~a~AL 396 (478)
+||+|+++||+|||+|+++++|+||+++||+|++|+++++|+|||||++|+++|..|++++. .++++|+|+++|++||
T Consensus 369 ~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL 448 (529)
T CHL00093 369 AKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAI 448 (529)
T ss_pred HHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999975 4899999999999999
Q ss_pred HHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 397 KMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 397 ~~ip~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
+.||++||+|||+|+.++ .+|+.. +.++|||+.+|+++||++.|||||+.||.+++..+. +|+++.++
T Consensus 449 ~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii 522 (529)
T CHL00093 449 LAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECII 522 (529)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999764 458999999999999999999999999997776654 66677666
No 9
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3e-95 Score=783.44 Aligned_cols=458 Identities=36% Similarity=0.520 Sum_probs=430.6
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||++++. ..+.+++|++||+++||||||+|+||++||+++.+|++ |+||..|++||++|.+.++++
T Consensus 53 G~tIlk~i~i~hp~~~~g--a~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~ 130 (544)
T PRK12850 53 GVTVAKEIELEDKFENMG--AQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDE 130 (544)
T ss_pred HHHHHHHhcCCChhhhHH--HHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 579999999999994444 33446889999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCcccccccc
Q 011725 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (478)
Q Consensus 84 L~~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~~~~~ 163 (478)
|+++++|+++.++|.++|++|+++++.+++++++|+..++++|.|.++.+....+++++++|++|+++|.+|||++++++
T Consensus 131 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~ 210 (544)
T PRK12850 131 LKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEK 210 (544)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCcccccccc
Confidence 99999999888899999999998899999999999999998888888876666678999999999999999999999989
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHH
Q 011725 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (478)
Q Consensus 164 ~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le 243 (478)
++.+++||+|+++|+++++.++++++++++.++|+||||++++|+++++++|+.|+++|.+++++||+|+||++|+++|+
T Consensus 211 ~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le 290 (544)
T PRK12850 211 MRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLE 290 (544)
T ss_pred CeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 011725 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (478)
Q Consensus 244 ~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~eRla 319 (478)
|||++|||++++++.+.+++++++++||+|++|++++++|++++|++++++++.|+++++++++++.+ ++|+|||+
T Consensus 291 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 370 (544)
T PRK12850 291 DIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLA 370 (544)
T ss_pred HHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999998876 99999999
Q ss_pred hhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 011725 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (478)
Q Consensus 320 ~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~~~~~e~~gi~~~a~AL~~i 399 (478)
||+|++|||+|||+|+++++|+||+++||+|++|+++++|||||||++|+++|..|+++...++++|+|+++|++||+.|
T Consensus 371 ~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 450 (544)
T PRK12850 371 KLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEP 450 (544)
T ss_pred HhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998445899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 400 p~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
||+||+|||+|+.++ .+|++.. .++|||+.+|+++||++.|||||+.||.+++..+. +|+++.+|
T Consensus 451 p~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI 521 (544)
T PRK12850 451 LRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMV 521 (544)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 999999999999999 9998753 57999999999999999999999999998777665 55577766
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.2e-94 Score=778.35 Aligned_cols=454 Identities=39% Similarity=0.549 Sum_probs=429.1
Q ss_pred HHHHhhhccccCc----ccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~~p----~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~ 79 (478)
..||||+|+++|| .|+++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.
T Consensus 53 G~tIlk~i~~~hp~~~~~akll------~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~ 126 (541)
T PRK12851 53 GVTIAKEIELEDKFENMGAQMV------REVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAA 126 (541)
T ss_pred HHHHHHHccCCCchhhHHHHHH------HHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5799999999999 66776 6889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCcccc
Q 011725 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~ 159 (478)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.+++++|.|.++.+....+++++++|++|++||.+|||++
T Consensus 127 ~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~ 206 (541)
T PRK12851 127 VVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVT 206 (541)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCcccccccc
Confidence 99999999999988888999999999889999999999999999888888876555567899999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhh
Q 011725 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk 239 (478)
++++|+.+++||+|+++|+++++.+++.++++.+.++|+||||++++|+++++++|+.|+++|.++|++||+|+||+.|+
T Consensus 207 ~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~ 286 (541)
T PRK12851 207 DADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 286 (541)
T ss_pred CCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 011725 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (478)
Q Consensus 240 ~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (478)
++|+|||++|||++++++.+.+++++++++||+|++|++.+++|+|++|++++++++.|+++|+++++++++ ++|+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (541)
T PRK12851 287 AMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQ 366 (541)
T ss_pred hHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999987777789999999999999999999999999999999999999999999988766 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011725 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (478)
Q Consensus 316 eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~~~~~e~~gi~~~a~A 395 (478)
|||+||+|+++||+|||+|+++++|+||+++||+|++|+++++|||||||++|+++|..|++++..++++|+|+++|++|
T Consensus 367 ~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~A 446 (541)
T PRK12851 367 ERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRA 446 (541)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886688999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 396 L~~ip~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
|+.||++||+|||+|+.++ .+|++.. .++|||+.+|+++||++.|||||+.||.+++..+. +|+++.++
T Consensus 447 L~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI 521 (541)
T PRK12851 447 LEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMV 521 (541)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 9999999999999999999 9998753 47999999999999999999999999997776655 55566666
No 11
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.2e-94 Score=783.19 Aligned_cols=455 Identities=31% Similarity=0.488 Sum_probs=428.4
Q ss_pred HHHHhhhccccCcc----cccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTT----GTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~~p~----~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~ 79 (478)
..||||+|+++||+ |+++ +++|++||+++||||||++|||++||+++.++++ |+||+.|++||++|.+.
T Consensus 108 G~TIlk~i~~~hP~~~~gakll------~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~ 181 (600)
T PLN03167 108 GVTVAKEVELEDPVENIGAKLV------RQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKA 181 (600)
T ss_pred HHHHHHHcccCCchhhHHHHHH------HHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999997 6666 6899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCcccc
Q 011725 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~ 159 (478)
+++.|++++.|+++ ++|.++|++|+++++.||+++++|+.+++++|.|.+++|++..+++++++|++|++||.||||++
T Consensus 182 ~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt 260 (600)
T PLN03167 182 LVKELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVT 260 (600)
T ss_pred HHHHHHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCccccc
Confidence 99999999999975 67999999999989999999999999999989999999999987779999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhh
Q 011725 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk 239 (478)
++++|+.+++||+|+++|++|++++++.++++.+.++|+||||++++|++++|++|+.|++++.++|++||+|+||++++
T Consensus 261 ~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~ 340 (600)
T PLN03167 261 DSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKS 340 (600)
T ss_pred CcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 011725 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (478)
Q Consensus 240 ~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (478)
++|+|||++|||++++++.+++++++++++||+|++|++.+++++++++.++++.+++|+.+|+..++++++ ++|+
T Consensus 341 ~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~ 420 (600)
T PLN03167 341 QYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLN 420 (600)
T ss_pred HHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHH
Confidence 999999999999999988888899999999999999999999999999999999999999999999987765 8999
Q ss_pred HHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcCC-ChhHH-HHHHHHH
Q 011725 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQK-IGVQIVQ 393 (478)
Q Consensus 316 eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~~-~~~e~-~gi~~~a 393 (478)
+||++|+|++++|+|||+|+.+++|+||+++||||++|+|+++|+|||||++|+++|..|++++.. ++++| +|+++|+
T Consensus 421 ~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~ 500 (600)
T PLN03167 421 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVK 500 (600)
T ss_pred HHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998764 55555 6699999
Q ss_pred HHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhccccc
Q 011725 394 NALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVH 466 (478)
Q Consensus 394 ~AL~~ip~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~ 466 (478)
+||+.|||+||+|||+|+.++ .+|++.+++++|||+.+|++.||++.|||||+.||++++..+. +|+++.+|.
T Consensus 501 ~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~ 579 (600)
T PLN03167 501 RALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVV 579 (600)
T ss_pred HHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999 9998655678999999999999999999999999998776655 555777663
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-84 Score=667.14 Aligned_cols=443 Identities=38% Similarity=0.554 Sum_probs=427.8
Q ss_pred HHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHh
Q 011725 7 SLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLD 85 (478)
Q Consensus 7 ~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~L~ 85 (478)
|+.+++++.++.-.+- +.+.++++....+++||||||+++||++|.+++.+-+. |.+|.+|.+|+.+|++.+++.|+
T Consensus 68 Tva~si~l~d~~~n~g--aklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~ 145 (550)
T KOG0356|consen 68 TVAKSIELKDKYENIG--AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELK 145 (550)
T ss_pred eeeccccccchhhhhc--cHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHH
Confidence 6788999999999888 88999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCccccccccce
Q 011725 86 CQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKE 165 (478)
Q Consensus 86 ~~s~~v~~~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~~~~~~~ 165 (478)
++++||++.+++.+||++|+++|..+++++.+|++++|++|.|+++.|.++.|++++++||.||+||+||||++++++..
T Consensus 146 k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~ 225 (550)
T KOG0356|consen 146 KMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQK 225 (550)
T ss_pred HhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHH
Q 011725 166 CVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDL 245 (478)
Q Consensus 166 ~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~l 245 (478)
++|++|++|+++.+|+++++|.|.||...+..+||+|+++||+.++|.+|++|++++.++|+|||.|+|||.|++.+.||
T Consensus 226 ~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Di 305 (550)
T KOG0356|consen 226 VEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDI 305 (550)
T ss_pred hhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEeeCCCC-CCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhh
Q 011725 246 AILTGGQVLTGGSG-MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAK 320 (478)
Q Consensus 246 a~~tGa~ii~~~~~-~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~eRla~ 320 (478)
|.+|||+++..+.+ ++++++++++||.|+++.++.+.+.++.|.+++.+++.||++++..++.+++ ++|+||+++
T Consensus 306 ai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ 385 (550)
T KOG0356|consen 306 AILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAK 385 (550)
T ss_pred HHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 99999999999988 7999999999999999999999999999999999999999999988888776 999999999
Q ss_pred hcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHH
Q 011725 321 LSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNALKMA 399 (478)
Q Consensus 321 l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~~-~~~~e~~gi~~~a~AL~~i 399 (478)
|+|++++|.|||.|+.|++|++++++||||++++|+++|+|||||+++++|+..|..+.. .+.+++.|++++.+||..|
T Consensus 386 ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P 465 (550)
T KOG0356|consen 386 LSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLP 465 (550)
T ss_pred hcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999876 4788999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccccccCCcccchHhHHHHHH
Q 011725 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLYVQVWGCRSTETCTIRICKGH 454 (478)
Q Consensus 400 p~~La~NAG~d~~~i-~kl~~~~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~ 454 (478)
.++||+|||.|+..+ .|++. .++|||..+|+|+||++.||+||++|.++++.
T Consensus 466 ~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~~ey~dlv~~GiidP~kVvr~al~ 518 (550)
T KOG0356|consen 466 AQTIAKNAGVDGSVVVEKVLN---DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALT 518 (550)
T ss_pred HHHHHHhcCCchHHHHHHHHh---hhhhhhhhcccHHHHHhccCCChHHHHHHhhh
Confidence 999999999999988 88883 38999999999999999999999998775444
No 13
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.1e-77 Score=644.11 Aligned_cols=407 Identities=17% Similarity=0.221 Sum_probs=357.7
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ + ++|++||+++||||||+++||++||++|.+||+ |+||+.|++||++|.+.++++
T Consensus 58 G~TIlk~i~i~hP~a~ll--~----~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (531)
T TIGR02347 58 GNVLLNEMQIQHPTASMI--A----RAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEF 131 (531)
T ss_pred HHHHHHhccccChHHHHH--H----HHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 4 788999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccccc---CCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCcc-e-----ee--ecCCcccceeEEEeeE
Q 011725 84 LDCQARKI---TTFEEIAQVGTTAANG------DGEIGELIAKVFEKGWENDL-I-----TI--FDRKALYNELNFVKGM 146 (478)
Q Consensus 84 L~~~s~~v---~~~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg~~~~-I-----~i--~~g~~~~~~~~l~~G~ 146 (478)
|+++++++ .+.+.|.++|++++++ ++.|++++++|+..+++++. | .+ ..|++. +++++++|+
T Consensus 132 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~-~ds~~v~Gi 210 (531)
T TIGR02347 132 LDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSA-TDTTLIRGL 210 (531)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCc-cccEEEeeE
Confidence 99999764 4678899999999864 67899999999999987653 3 33 246665 579999999
Q ss_pred EEeecccCCccccccccceeeecCcEEEEeccccCCH-------------HH-----------HHHHHHHHHhcCC----
Q 011725 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQGQ---- 198 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~~-------------~~-----------i~~~le~i~~~g~---- 198 (478)
+|+++|.+|+|++ +++||+|+++|++++.. ++ +...++++.+.|.
T Consensus 211 v~~~~~~~~~~~~-------~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~ 283 (531)
T TIGR02347 211 VLDHGARHPDMPR-------RVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCG 283 (531)
T ss_pred EEecCcCCCCCce-------eccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999833 78999999999876532 22 3345667776551
Q ss_pred ---C---EEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccc
Q 011725 199 ---S---LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 272 (478)
Q Consensus 199 ---~---lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~ 272 (478)
+ ||+++++|++.++++|..+ +|+++|++ ++++|+|||++|||+++++ ++++++++||+
T Consensus 284 ~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~rv-----~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~ 347 (531)
T TIGR02347 284 KSPDKGFVVINQKGIDPPSLDLLAKE------GIMALRRA-----KRRNMERLTLACGGEALNS-----VEDLTPECLGW 347 (531)
T ss_pred cCCCccEEEEeCCCccHHHHHHHHHC------CceEEccC-----CHHHHHHHHHHhCCEEecc-----cccCCcccccc
Confidence 3 8888999999999988864 58999987 4668999999999999986 88999999999
Q ss_pred cceE---EEeCceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHH
Q 011725 273 CKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNAL 349 (478)
Q Consensus 273 a~~v---~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl 349 (478)
|++| ++++++|++++++++++ +|||+|||+|+.+++|+||+++||+
T Consensus 348 ~~~v~~~~ig~~~~~~i~~~~~~~-------------------------------~~TI~lrG~t~~~l~E~er~l~DAl 396 (531)
T TIGR02347 348 AGLVYETSIGEEKYTFIEEVKNPK-------------------------------SCTILIKGPNDHTIKQIKDAVRDGL 396 (531)
T ss_pred ceEEEEEEECCeEEEEEEcCCCCC-------------------------------eEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999 68899999999987763 5999999999999999999999999
Q ss_pred HHHHHHHhcC-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCC
Q 011725 350 HAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSS 423 (478)
Q Consensus 350 ~~~k~a~~~g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~ 423 (478)
+++|+++++| +|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.
T Consensus 397 ~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~ 476 (531)
T TIGR02347 397 RAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGE 476 (531)
T ss_pred HHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCC
Confidence 9999999998 9999999999999999999765 899999999999999999999999999999999 888753 345
Q ss_pred CeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----HhhhcccccCCCcch
Q 011725 424 DLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVHGGSSMS 472 (478)
Q Consensus 424 ~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~~~~~~~ 472 (478)
++|||+.+|++.||++.|||||+.||++++..+. +|+++.++-..++|-
T Consensus 477 ~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~~ 530 (531)
T TIGR02347 477 VVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSML 530 (531)
T ss_pred ceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccccC
Confidence 7999999999999999999999999997766554 777899887777763
No 14
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.1e-78 Score=642.68 Aligned_cols=394 Identities=17% Similarity=0.232 Sum_probs=351.9
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ + ++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.+++.
T Consensus 54 G~tIlk~i~~~hP~a~l~--~----~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~ 127 (484)
T cd03342 54 GNVLLSEMQIQHPTASMI--A----RAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKF 127 (484)
T ss_pred HHHHHHhccCcCHHHHHH--H----HHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 4 788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC---CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCc-c-----eeee--cCCcccceeEEEeeE
Q 011725 84 LDCQARKIT---TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWEND-L-----ITIF--DRKALYNELNFVKGM 146 (478)
Q Consensus 84 L~~~s~~v~---~~~~l~~vA~~s~~~~------~~~~~li~~A~~~vg~~~-~-----I~i~--~g~~~~~~~~l~~G~ 146 (478)
|++++.+++ +.+.+.+||++|++++ +.|++++++|+..+++++ . |++. .|++. +++++++|+
T Consensus 128 L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~-~ds~~i~G~ 206 (484)
T cd03342 128 LESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSD-SDTKLIRGL 206 (484)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCCh-hhceEEeeE
Confidence 999999987 7889999999999864 789999999999998765 2 3332 57776 579999999
Q ss_pred EEeecccCCccccccccceeeecCcEEEEeccccCCHHH-HHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCc
Q 011725 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~-i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~ 225 (478)
+|+++|.+|+|+ .+++||+|+++|++++..+. +.. ..-.+|||++++|++.++++|..|+
T Consensus 207 ~~~~~~~~~~m~-------~~~~n~~Ill~~~~le~~~~~~~~------~~~~~lvi~~~~I~~~al~~l~~~~------ 267 (484)
T cd03342 207 VLDHGARHPDMP-------KRVENAYILTCNVSLEYEKTEVNS------GFFYSVVINQKGIDPPSLDMLAKEG------ 267 (484)
T ss_pred EEecCCCCCCCC-------ccccCceEEEEeCCCCCCccccCc------EEEEEEEEeCCCccHHHHHHHHHCC------
Confidence 999999999882 36899999999999887653 211 1124699999999999999999774
Q ss_pred EEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceE---EEeCceEEEEcCCCChhhHHHHHHHH
Q 011725 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQL 302 (478)
Q Consensus 226 i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v---~i~~~~~~~i~g~~~~~~i~~r~~~l 302 (478)
|++||+. ++++|+|||++|||+++++ ++++++++||+|++| ++++++|++++|++++
T Consensus 268 I~av~~~-----~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------- 327 (484)
T cd03342 268 ILALRRA-----KRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP---------- 327 (484)
T ss_pred CeEEEeC-----CHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeEEEEEECCCCC----------
Confidence 8999987 5778999999999999996 889999999999999 5788999999998776
Q ss_pred HHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccChhHHHHHHHHHHHhhcCC
Q 011725 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (478)
Q Consensus 303 ~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g-iVpGGGa~el~~s~~L~~~~~~ 381 (478)
++|||+|||+|+.+++|+||+++||++++|+++++| +|||||++|+++|..|++++..
T Consensus 328 ---------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~ 386 (484)
T cd03342 328 ---------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKS 386 (484)
T ss_pred ---------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhc
Confidence 359999999999999999999999999999999999 9999999999999999999775
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCcccccccCCcccchHhHHHHHHhh
Q 011725 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKY 456 (478)
Q Consensus 382 -~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~ 456 (478)
++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|+++||++.|||||+.||.+++..+
T Consensus 387 ~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A 466 (484)
T cd03342 387 VKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSA 466 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHH
Confidence 899999999999999999999999999999999 888753 456799999999999999999999999999777655
Q ss_pred h-----Hhhhcccc
Q 011725 457 D-----FIEECNLV 465 (478)
Q Consensus 457 ~-----~~~~~~~~ 465 (478)
. +|+++.++
T Consensus 467 ~e~a~~iL~ID~ii 480 (484)
T cd03342 467 TVIASQLLLVDEII 480 (484)
T ss_pred HHHHHHHhhhhHhh
Confidence 4 66677765
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=6.1e-77 Score=640.86 Aligned_cols=400 Identities=18% Similarity=0.242 Sum_probs=359.5
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+|+||++|++++.++++ |+||..|++||++|.+.+++.
T Consensus 57 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03343 57 GATILKEMDIEHPAAKML------VEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALEL 130 (517)
T ss_pred HHHHHHHccCcCHHHHHH------HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 579999999999999998 5888999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCcc---------eee--ecCCcccceeEEEe
Q 011725 84 LDCQARKIT--TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWENDL---------ITI--FDRKALYNELNFVK 144 (478)
Q Consensus 84 L~~~s~~v~--~~~~l~~vA~~s~~~~------~~~~~li~~A~~~vg~~~~---------I~i--~~g~~~~~~~~l~~ 144 (478)
|++++++++ +.+.+.+||++|++++ +.|++++++|+.++++++. |++ .+|+++. ++++++
T Consensus 131 L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~-ds~lv~ 209 (517)
T cd03343 131 LDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVD-DTELIR 209 (517)
T ss_pred HHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHH-Hcceee
Confidence 999999986 6788999999999864 7899999999999987543 666 4788885 799999
Q ss_pred eEEEeecccCCccccccccceeeecCcEEEEeccc-------------cCCHHHHHHHH-----------HHHHhcCCCE
Q 011725 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQAS-----------LPCMMQGQSL 200 (478)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~-------------i~~~~~i~~~l-----------e~i~~~g~~l 200 (478)
|++|+++|.+|+|+ ..++||+|++++++ +++++++.+++ +.+.+.|.||
T Consensus 210 G~v~~~~~~~~~m~-------~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 282 (517)
T cd03343 210 GIVIDKEVVHPGMP-------KRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANV 282 (517)
T ss_pred eEEEeccCCCCCCc-------cccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999883 36899999999988 47777766654 4888999999
Q ss_pred EEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEe-
Q 011725 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT- 279 (478)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~- 279 (478)
||++++|++.++++|..+ ++++|+++ ++++|+|||++|||+++++ ++++++++||+|++|++.
T Consensus 283 vi~~~~I~~~al~~l~~~------gI~~v~~v-----~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 346 (517)
T cd03343 283 VFCQKGIDDLAQHYLAKA------GILAVRRV-----KKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERK 346 (517)
T ss_pred EEeCCCccHHHHHHHhHC------CcEEEEeC-----CHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEE
Confidence 999999999999988743 47899987 5788999999999999996 888999999999999854
Q ss_pred --CceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHh
Q 011725 280 --MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (478)
Q Consensus 280 --~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~ 357 (478)
+++|++++||++++ .|||+|||+|+.+++|.||+++||++++|++++
T Consensus 347 ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 347 VGDDKMVFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred ECCeEEEEEEcCCCCc-------------------------------eEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999988764 389999999999999999999999999999999
Q ss_pred cC-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCC
Q 011725 358 EG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR 431 (478)
Q Consensus 358 ~g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~---~~~~~~Gid~~~ 431 (478)
+| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~ 475 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYT 475 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCC
Confidence 99 9999999999999999998765 899999999999999999999999999999998 88874 245679999999
Q ss_pred CcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 432 GLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 432 g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
|++.||++.|||||+.||++++..+. +|+++.++
T Consensus 476 g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii 514 (517)
T cd03343 476 GEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVI 514 (517)
T ss_pred CCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 99999999999999999998776654 55566655
No 16
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.6e-76 Score=637.45 Aligned_cols=400 Identities=17% Similarity=0.228 Sum_probs=357.1
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02339 58 GATILKEMDIEHPAAKML------VEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEI 131 (519)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC--HHHHHHHHHHhcCCC-------hhHHHHHHHHHHhhcc---Ccc-------eee--ecCCcccceeEE
Q 011725 84 LDCQARKITT--FEEIAQVGTTAANGD-------GEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNF 142 (478)
Q Consensus 84 L~~~s~~v~~--~~~l~~vA~~s~~~~-------~~~~~li~~A~~~vg~---~~~-------I~i--~~g~~~~~~~~l 142 (478)
|+++++|+++ .+.|.++|++|++++ +.|++++++|+.++++ +|. |++ ..|+++. ++++
T Consensus 132 L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~-ds~l 210 (519)
T TIGR02339 132 IDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSID-DTEL 210 (519)
T ss_pred HHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChh-ccee
Confidence 9999999863 678999999999754 7899999999999985 453 345 4788875 7999
Q ss_pred EeeEEEeecccCCccccccccceeeecCcEEEEeccc-------------cCCHHHHHHHHH-----------HHHhcCC
Q 011725 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQ 198 (478)
Q Consensus 143 ~~G~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~-------------i~~~~~i~~~le-----------~i~~~g~ 198 (478)
++|++|+++|.+|.| +..++||+|++++++ +++++++.++++ .+++.|.
T Consensus 211 v~G~vi~~~~~~~~m-------~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~ 283 (519)
T TIGR02339 211 VEGIVVDKEPVHPGM-------PKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGA 283 (519)
T ss_pred EeeEEEecCCCCCCC-------ccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999865 347899999999987 677888777766 7899999
Q ss_pred CEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEE
Q 011725 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA 278 (478)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i 278 (478)
|||+++++|++.++++|.. .++++|+++ ++++|+|||++|||+++++ ++++++++||+|++|++
T Consensus 284 ~lvi~~~~I~~~al~~L~~------~gI~~v~~v-----~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~ 347 (519)
T TIGR02339 284 NVVFCQKGIDDLAQHYLAK------AGILAVRRV-----KKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEE 347 (519)
T ss_pred cEEEECCCccHHHHHHHHH------CCCEEEecC-----CHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEE
Confidence 9999999999999998874 347889987 5778999999999999996 78888899999999986
Q ss_pred e---CceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Q 011725 279 T---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (478)
Q Consensus 279 ~---~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a 355 (478)
. +++|++++||+++. .|||+|||+|+.+++|.||+++||++++|++
T Consensus 348 ~~ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 348 RKVGDDKMTFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred EEECCeEEEEEEcCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 58999999987664 4899999999999999999999999999999
Q ss_pred HhcC-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeC
Q 011725 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNP 429 (478)
Q Consensus 356 ~~~g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~---~~~~~~Gid~ 429 (478)
+++| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~ 476 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINV 476 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEc
Confidence 9999 9999999999999999999765 889999999999999999999999999999998 88874 2456799999
Q ss_pred CCCcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 430 ARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 430 ~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
.+|++.||++.|||||+.||++++..+. +|+++.++
T Consensus 477 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii 517 (519)
T TIGR02339 477 FTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVI 517 (519)
T ss_pred CCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHh
Confidence 9999999999999999999997776554 55565544
No 17
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-78 Score=644.71 Aligned_cols=435 Identities=28% Similarity=0.396 Sum_probs=371.1
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011725 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~L 84 (478)
.||||+|+++||.||++ +++|++||+++||||||+||||++||++|.+++. |+||+.|++||++|.+.++++|
T Consensus 54 ~tIlkeielehp~akll------~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l 127 (524)
T COG0459 54 VTILKEIELEHPGAKLL------VEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEEL 127 (524)
T ss_pred ceehhhhhccCchhHHH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999 4788999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccCCHH-----HHHHHHHHhcCCChhHHHHHHHHHHhhcc-----CcceeeecCCcccceeEEEeeEEEeecccC
Q 011725 85 DCQARKITTFE-----EIAQVGTTAANGDGEIGELIAKVFEKGWE-----NDLITIFDRKALYNELNFVKGMKLEWGLKS 154 (478)
Q Consensus 85 ~~~s~~v~~~~-----~l~~vA~~s~~~~~~~~~li~~A~~~vg~-----~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~ 154 (478)
+++++++++.+ ...++++.++++++.|++++++|+.+++. ++.+.++..+...+++++++||+||+||.+
T Consensus 128 ~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s 207 (524)
T COG0459 128 KEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLS 207 (524)
T ss_pred HHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccC
Confidence 99999998554 44455555566678999999999999998 777777765555678999999999999999
Q ss_pred CccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCc
Q 011725 155 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 234 (478)
Q Consensus 155 ~~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~ 234 (478)
|||.++ .+++||+|+++|++|+..+..++ ++.....+.||++++++..++++..++.|.+++..++++|+.|+|
T Consensus 208 ~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi 281 (524)
T COG0459 208 PYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI 281 (524)
T ss_pred CCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 998654 47899999999999998888877 777777788888888888888888889888888888889999999
Q ss_pred chhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEeCceEEEEcCCCChhhHHHHHHHHHHHhhhc-cc--
Q 011725 235 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLS-TS-- 311 (478)
Q Consensus 235 g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~-~s-- 311 (478)
||.++..|+|++++||+++.+++.+ .....+|.|+.|.+.++.+....|.+. ..++++. .+
T Consensus 282 ~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~ 345 (524)
T COG0459 282 DDLAKAYLEDIAILTGRRVKKEDLG-----ERLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDY 345 (524)
T ss_pred cHHHHHHHHhhcceecceecchhhH-----HHHHHccCceEEeecccCceeecCccc-----------cceEEEeeccch
Confidence 9988888888888888888876432 144567777777776666665555320 1112222 22
Q ss_pred --HHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccChhHHHHHHHHHHHhh-cCCCh-hHH
Q 011725 312 --DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL-QTTNS-DQK 386 (478)
Q Consensus 312 --~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g-iVpGGGa~el~~s~~L~~~-~~~~~-~e~ 386 (478)
.++++|.++ .+++|||+|||+|+.+++|+||++|||||++|+++++| +|||||++|+++|+.|++| ...++ ++|
T Consensus 346 ~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~ 424 (524)
T COG0459 346 DMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQ 424 (524)
T ss_pred hhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHH
Confidence 778888888 89999999999999999999999999999999999999 9999999999999999998 33455 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCC-CCeeEeCCCCcc-cccccCCcccchHhHHHHHHhhh-----H
Q 011725 387 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDS-SDLGYNPARGLY-VQVWGCRSTETCTIRICKGHKYD-----F 458 (478)
Q Consensus 387 ~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~~~-~~~Gid~~~g~~-~dm~~~gI~Dp~~Vk~~~~~~~~-----~ 458 (478)
+|+++|++||+.||++||+|||+||.++ .+|++... +++|||+.+|++ .||++.|||||++||+++++.++ +
T Consensus 425 ~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~ll 504 (524)
T COG0459 425 LGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLL 504 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99998654 459999999999 78999999999999997777665 5
Q ss_pred hhhcccccCCC
Q 011725 459 IEECNLVHGGS 469 (478)
Q Consensus 459 ~~~~~~~~~~~ 469 (478)
|+++.++....
T Consensus 505 L~~d~iI~~~~ 515 (524)
T COG0459 505 LTIDDIIAAKP 515 (524)
T ss_pred HHHHHhhccCC
Confidence 55777774433
No 18
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.3e-76 Score=635.91 Aligned_cols=405 Identities=16% Similarity=0.196 Sum_probs=355.0
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 50 G~tIlk~i~~~hP~akll------~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (527)
T cd03335 50 GATILKLLEVEHPAAKIL------VELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKY 123 (527)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4788999999999999999999999999999999 999999999999999999999
Q ss_pred Hhc-cccccC--CHHHHHHHHHHhcC-----C-ChhHHHHHHHHHHhhc---cCcc-------eee--ecCCcccceeEE
Q 011725 84 LDC-QARKIT--TFEEIAQVGTTAAN-----G-DGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (478)
Q Consensus 84 L~~-~s~~v~--~~~~l~~vA~~s~~-----~-~~~~~~li~~A~~~vg---~~~~-------I~i--~~g~~~~~~~~l 142 (478)
|++ +++|++ +.+.|.++|++|++ + .+.|++++++|+..++ .+|. |.+ ..|+++. ++++
T Consensus 124 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~-~s~l 202 (527)
T cd03335 124 IKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAK-ESYL 202 (527)
T ss_pred HHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChh-hcce
Confidence 996 899987 77889999999987 2 4789999999999985 2232 222 3688875 7999
Q ss_pred EeeEEEeecccCCccccccccceeeecCcEEEEeccccCC-------------HHH-----------HHHHHHHHHhcCC
Q 011725 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNV-----------IRQASLPCMMQGQ 198 (478)
Q Consensus 143 ~~G~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~-------------~~~-----------i~~~le~i~~~g~ 198 (478)
++|++|+++|.+|.| +..++||+|++++++++. +++ +.++++.+.+.|+
T Consensus 203 i~Givi~~~~~~~~m-------~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~ 275 (527)
T cd03335 203 VNGYALNCTRASQGM-------PTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGA 275 (527)
T ss_pred eeeEEEecccCCCCC-------cccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999865 337999999999987653 122 3366788889999
Q ss_pred CEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCC-CcCCCCCCCccccceEE
Q 011725 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (478)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~-~~~~~~~~~LG~a~~v~ 277 (478)
||||++++|++.++++|..+ +|++++++ ++++|+|||++|||+++++..++ ..+++++++||+|++|+
T Consensus 276 ~lvi~~k~I~d~al~~L~~~------~I~~v~~v-----~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 344 (527)
T cd03335 276 NVVLTTGGIDDMCLKYFVEA------GAMAVRRV-----KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVV 344 (527)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEEeC-----CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEE
Confidence 99999999999999999875 48999987 57789999999999999975443 22456677899999998
Q ss_pred ---EeCceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHH
Q 011725 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (478)
Q Consensus 278 ---i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~ 354 (478)
+++++|++++|++++ ++|||+|||+|+.+++|+||+++||++++++
T Consensus 345 ~~~ig~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~ 393 (527)
T cd03335 345 QERIGDDELILIKGTKKR-------------------------------SSASIILRGANDFMLDEMERSLHDALCVVKR 393 (527)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 788999999998764 4699999999999999999999999999999
Q ss_pred HHhcC-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 011725 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (478)
Q Consensus 355 a~~~g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~------- 421 (478)
++++| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 394 ~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~ 473 (527)
T cd03335 394 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKK 473 (527)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 99999 9999999999999999999765 899999999999999999999999999999998 888762 2
Q ss_pred -CCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 422 -SSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 422 -~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
++++|||+.+|++.||++.|||||+.||.+++.++. +|+++.++
T Consensus 474 ~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii 523 (527)
T cd03335 474 HLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLI 523 (527)
T ss_pred cCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhccee
Confidence 346899999999999999999999999997776654 66677766
No 19
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.5e-76 Score=634.57 Aligned_cols=412 Identities=16% Similarity=0.195 Sum_probs=360.1
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 54 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 127 (536)
T TIGR02340 54 GATILKLLEVEHPAAKIL------VELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKY 127 (536)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 5888999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcc-ccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhc---cCcc-------eee--ecCCcccceeEE
Q 011725 84 LDCQ-ARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (478)
Q Consensus 84 L~~~-s~~v~--~~~~l~~vA~~s~~------~~~~~~~li~~A~~~vg---~~~~-------I~i--~~g~~~~~~~~l 142 (478)
|+++ ++|++ +.+++.++|+++++ +++.|++++++|+..++ .+|. |.+ ..|+++ +++++
T Consensus 128 L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~-~~s~~ 206 (536)
T TIGR02340 128 IKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSA-RESYL 206 (536)
T ss_pred HHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCc-cccEE
Confidence 9975 88887 77889999999987 46889999999999986 3342 333 478888 68999
Q ss_pred EeeEEEeecccCCccccccccceeeecCcEEEEeccccCCHH------------------------HHHHHHHHHHhcCC
Q 011725 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSN------------------------VIRQASLPCMMQGQ 198 (478)
Q Consensus 143 ~~G~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~~~------------------------~i~~~le~i~~~g~ 198 (478)
++|++|+++|.+|.| +.+++||+|++++++++..+ .+.+.++.+.+.|.
T Consensus 207 i~Gi~i~~~~~~~~m-------~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~ 279 (536)
T TIGR02340 207 VKGYALNCTRASQQM-------PKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGA 279 (536)
T ss_pred EEEEEEecccCCCCC-------cceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999865 34799999999998764332 23356777888999
Q ss_pred CEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCC-CcCCCCCCCccccceEE
Q 011725 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (478)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~-~~~~~~~~~LG~a~~v~ 277 (478)
+||+++++|++.++++|..+ ++++++++ ++++|+|||++|||+++++..++ ..+++++++||+|++|+
T Consensus 280 ~lvi~~k~I~~~a~~~L~k~------~I~~i~rv-----~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 348 (536)
T TIGR02340 280 NVVLTTGGIDDMCLKYFVEA------GAMGVRRC-----KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVV 348 (536)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEecC-----CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEE
Confidence 99999999999999988864 48899987 47789999999999999986444 33456778899999998
Q ss_pred ---EeCceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHH
Q 011725 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (478)
Q Consensus 278 ---i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~ 354 (478)
+++++|+++++++++. +|||+|||+|+.+++|+||+++||+|++|+
T Consensus 349 ~~~ig~~~~~~i~~~~~~~-------------------------------~~TIlirG~t~~~l~E~~r~i~DAl~~~~~ 397 (536)
T TIGR02340 349 EERIADDECILIKGTKGRK-------------------------------SASIILRGANDFMLDEMERSLHDALCVVKR 397 (536)
T ss_pred EEEECCeEEEEEEcCCCCC-------------------------------EEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999987653 599999999999999999999999999999
Q ss_pred HHhcC-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 011725 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (478)
Q Consensus 355 a~~~g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~------- 421 (478)
++++| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 398 ~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~ 477 (536)
T TIGR02340 398 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKK 477 (536)
T ss_pred HhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccc
Confidence 99999 9999999999999999998664 899999999999999999999999999999988 888752 1
Q ss_pred -CCCeeEeCCCCcccccccCCcccchHhHHHHHHhh-----hHhhhcccccCCCcch
Q 011725 422 -SSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKY-----DFIEECNLVHGGSSMS 472 (478)
Q Consensus 422 -~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~-----~~~~~~~~~~~~~~~~ 472 (478)
+.++|||+.+|++.||++.|||||+.||.+++..+ .+|+++.++.....+|
T Consensus 478 ~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~~ 534 (536)
T TIGR02340 478 HLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQS 534 (536)
T ss_pred cCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCC
Confidence 34699999999999999999999999999776655 4777888885554444
No 20
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6e-76 Score=632.28 Aligned_cols=406 Identities=17% Similarity=0.220 Sum_probs=352.9
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 51 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 124 (517)
T TIGR02342 51 GATILKQMGVIHPAAKML------VELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKI 124 (517)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999998 4888999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---Ccc-----eeee--cCCcccceeEEEee
Q 011725 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---NDL-----ITIF--DRKALYNELNFVKG 145 (478)
Q Consensus 84 L~~~s~~v~--~~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg~---~~~-----I~i~--~g~~~~~~~~l~~G 145 (478)
|+++++|++ +.+.|.++|++|+++ .+.|++++++|+..+++ ++. |++. .|+++ +++++++|
T Consensus 125 L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~-~ds~li~G 203 (517)
T TIGR02342 125 LDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTI-DDTELIEG 203 (517)
T ss_pred HHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCCh-hhcEEEee
Confidence 999999886 778899999999973 34679999999999975 233 3333 56666 57999999
Q ss_pred EEEeecccCC-ccccccccceeeecCcEEEEeccccC-------------CH-----------HHHHHHHHHHHhcCCCE
Q 011725 146 MKLEWGLKSP-YFFTHKNKKECVLDGALVLIYDTKIS-------------NS-----------NVIRQASLPCMMQGQSL 200 (478)
Q Consensus 146 ~~~~~g~~~~-~~~~~~~~~~~~l~~p~Il~~d~~i~-------------~~-----------~~i~~~le~i~~~g~~l 200 (478)
++|+++|.++ .| +..++||+|++++++++ ++ +++.++++++++.|+||
T Consensus 204 ivl~k~~~~~~~m-------pk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~l 276 (517)
T TIGR02342 204 LVFTQKASRSAGG-------PTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNV 276 (517)
T ss_pred EEEeccccccCCC-------CccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9999999984 33 22467788877765432 21 34667889999999999
Q ss_pred EEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE---
Q 011725 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI--- 277 (478)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~--- 277 (478)
|+++++|++++++.++.|.+.+ ++|++||+. ++++|+|||++|||+++++ ++++++++||+|+.|+
T Consensus 277 vi~~~~I~~~~l~~l~~~~l~~-~~I~av~~v-----~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 345 (517)
T TIGR02342 277 LLIQKSILRDAVNDLALHFLAK-MKIMVVKDI-----EREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVT 345 (517)
T ss_pred EEECCCcccccccHHHHHHHhh-CCceEEecC-----CHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEE
Confidence 9999999887777777777766 789999987 6888999999999999996 7889999999999998
Q ss_pred EeCceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHh
Q 011725 278 ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (478)
Q Consensus 278 i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~ 357 (478)
++++.++++.+++++ +++|||+|||+|+.+++|+||+++||++++|++++
T Consensus 346 ~~~~~~~~i~~~~~~------------------------------~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~ 395 (517)
T TIGR02342 346 TDGGKIIKITGIQNA------------------------------GKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVK 395 (517)
T ss_pred ECCeEEEEEEccCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677888887653 35799999999999999999999999999999999
Q ss_pred c-CcccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCC
Q 011725 358 E-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR 431 (478)
Q Consensus 358 ~-giVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~~~Gid~~~ 431 (478)
+ ++|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 396 ~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~ 475 (517)
T TIGR02342 396 KRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRK 475 (517)
T ss_pred CCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCC
Confidence 8 59999999999999999999765 899999999999999999999999999999999 888762 45679999999
Q ss_pred CcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 432 GLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 432 g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
|+++||++.|||||+.||++++..+. +|++++++
T Consensus 476 g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii 514 (517)
T TIGR02342 476 GGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIV 514 (517)
T ss_pred CCccchhhccceEcHHHHHHHHHHHHHHHHHHhccccee
Confidence 99999999999999999998777665 55577665
No 21
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-75 Score=630.10 Aligned_cols=405 Identities=15% Similarity=0.166 Sum_probs=359.8
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||++|++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|.+.+++.
T Consensus 58 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (522)
T cd03340 58 GATILKLLDIVHPAAKTL------VDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEK 131 (522)
T ss_pred HHHHHHHccccCHHHHHH------HHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 4788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC------HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCc---ceeee--cCCcccceeEEEeeE
Q 011725 84 LDCQARKITT------FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITIF--DRKALYNELNFVKGM 146 (478)
Q Consensus 84 L~~~s~~v~~------~~~l~~vA~~s~~------~~~~~~~li~~A~~~vg~~~---~I~i~--~g~~~~~~~~l~~G~ 146 (478)
|+++++|+++ .+.|.++|+++++ ++++|++++++|+.++++++ .|++. .|++.. ++++++|+
T Consensus 132 L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~-ds~lv~Gi 210 (522)
T cd03340 132 IKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLE-DSQLVNGV 210 (522)
T ss_pred HHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChh-hceeeeeE
Confidence 9999998864 5669999999876 46789999999999998765 34443 687775 69999999
Q ss_pred EEeecccCCccccccccceeeecCcEEEEecccc-------------CCHHH-----------HHHHHHHHHhcCCCEEE
Q 011725 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNSNV-----------IRQASLPCMMQGQSLLV 202 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i-------------~~~~~-----------i~~~le~i~~~g~~lvI 202 (478)
+|+++|.+|+|.+.|+ .++||+|++++.++ +++++ +.+.++.+.+.|.++|+
T Consensus 211 v~~k~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl 286 (522)
T cd03340 211 AFKKTFSYAGFEQQPK----KFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVL 286 (522)
T ss_pred EEecccCccccccCCc----cccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999876654 58999999999873 44443 45667888899999999
Q ss_pred EecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE---Ee
Q 011725 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (478)
+++.|++.++++|..+ +|++++++ ++++|+|||++|||+++++ ++++++++||+|++|+ ++
T Consensus 287 ~~~~i~d~a~~~l~~~------~I~~~~~v-----~~~~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig 350 (522)
T cd03340 287 SKLPIGDLATQYFADR------DIFCAGRV-----PEEDLKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVG 350 (522)
T ss_pred eCCCCcHHHHHHHHHC------CcEEEEeC-----CHHHHHHHHHHHCCEEeec-----cccCCccccccceEEEEEEEC
Confidence 9999999999988864 47899987 4677999999999999996 7889999999999997 67
Q ss_pred CceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011725 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (478)
Q Consensus 280 ~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g 359 (478)
+++++++.||..++ .+||++||+|+..++|.||+++||++++|+++++|
T Consensus 351 ~~~~~~~~~~~~~~-------------------------------~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 399 (522)
T cd03340 351 GERYNIFTGCPKAK-------------------------------TCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKND 399 (522)
T ss_pred CEEEEEEECCCCCc-------------------------------eEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88999999987653 58999999999999999999999999999999997
Q ss_pred -cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CC-CCeeEeCCCC
Q 011725 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DS-SDLGYNPARG 432 (478)
Q Consensus 360 -iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~-~~~Gid~~~g 432 (478)
+|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++ .++|||+.+|
T Consensus 400 ~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g 479 (522)
T cd03340 400 SVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNE 479 (522)
T ss_pred CEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCC
Confidence 9999999999999999999764 899999999999999999999999999999999 999763 33 5799999999
Q ss_pred cccccccCCcccchHhHHHHHHhhh-----HhhhcccccC
Q 011725 433 LYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVHG 467 (478)
Q Consensus 433 ~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~~ 467 (478)
++.||++.|||||+.||++++..+. +|++++++-.
T Consensus 480 ~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~ 519 (522)
T cd03340 480 GIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKN 519 (522)
T ss_pred cccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeC
Confidence 9999999999999999997776654 6667777643
No 22
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.1e-76 Score=632.67 Aligned_cols=407 Identities=16% Similarity=0.194 Sum_probs=354.2
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+++||++|++++.++++ |+||+.|++||++|.+.++++
T Consensus 50 G~tIlk~l~~~hp~a~ll------~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (515)
T cd03338 50 GATILKQMSVLHPAAKML------VELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEI 123 (515)
T ss_pred HHHHHHhCcCcCHHHHHH------HHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 4778999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCcc----------eeeecCCcccceeEEEee
Q 011725 84 LDCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWENDL----------ITIFDRKALYNELNFVKG 145 (478)
Q Consensus 84 L~~~s~~v~--~~~~l~~vA~~s~~------~~~~~~~li~~A~~~vg~~~~----------I~i~~g~~~~~~~~l~~G 145 (478)
|+++++|++ +.+.|.++|++|++ +++.|++++++|+.++++++. |....|+++. ++++++|
T Consensus 124 L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~-ds~lv~G 202 (515)
T cd03338 124 LDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIE-DTELVDG 202 (515)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChh-hceeeee
Confidence 999999986 77899999999998 457899999999999987653 4445788875 5799999
Q ss_pred EEEeecccCCccccccccceeeecCcEEEEecccc-------------CCH-----------HHHHHHHHHHHhcCCCEE
Q 011725 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLL 201 (478)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i-------------~~~-----------~~i~~~le~i~~~g~~lv 201 (478)
++|+++|.+|++. |+ .+.||+|+++++++ ++. +++.++++.+++.|.|||
T Consensus 203 iv~~k~~~~~~~~--p~----~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lv 276 (515)
T cd03338 203 LVFTQKASKKAGG--PT----RIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVL 276 (515)
T ss_pred EEEeccccCcCCC--Cc----cccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999997641 22 35666666655432 222 456778999999999999
Q ss_pred EEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEE---
Q 011725 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA--- 278 (478)
Q Consensus 202 Ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i--- 278 (478)
|++++|++++++.++.|.+.+ .+|++|++. ++++|+|||++|||+++++ ++++++++||+|+.|++
T Consensus 277 i~~~~i~~~~v~~l~~~~l~~-~~I~av~~~-----~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~ 345 (515)
T cd03338 277 LIQKSILRDAVSDLALHFLAK-LKIMVVKDI-----EREEIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSL 345 (515)
T ss_pred EECCCcccccccHHHHHHHHH-CCceEEecC-----CHHHHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEE
Confidence 999999777777777777665 789999976 6888999999999999996 78899999999999975
Q ss_pred eCceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 011725 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (478)
Q Consensus 279 ~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~ 358 (478)
++++++++.++.++ ++.|||+|||+|+.+++|+||+++||++++|+++++
T Consensus 346 g~~~~~~i~~~~~~------------------------------~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 346 GDGKIVKITGVKNP------------------------------GKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred CCeEEEEEEecCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45678999887642 357999999999999999999999999999999999
Q ss_pred C-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 011725 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (478)
Q Consensus 359 g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~~~Gid~~~g 432 (478)
| +|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g 475 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKG 475 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCC
Confidence 9 9999999999999999998765 889999999999999999999999999999999 888762 456799999999
Q ss_pred cccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 433 LYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 433 ~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
+++||++.|||||+.||++++..+. +|+++.++
T Consensus 476 ~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii 513 (515)
T cd03338 476 AITNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513 (515)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhh
Confidence 9999999999999999998777665 44455544
No 23
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.8e-75 Score=630.05 Aligned_cols=403 Identities=18% Similarity=0.176 Sum_probs=350.9
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+++||++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 69 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 142 (532)
T TIGR02343 69 GATILSQMDVDNPIAKLM------VELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEH 142 (532)
T ss_pred HHHHHHHccCCCHHHHHH------HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 4788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc--Cc-----ceeee--cCCcccceeEEEe
Q 011725 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE--ND-----LITIF--DRKALYNELNFVK 144 (478)
Q Consensus 84 L~~~s~~v~----~~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg~--~~-----~I~i~--~g~~~~~~~~l~~ 144 (478)
|+++++|++ +.+.|.++|++++++ .+.|++++++|+..+.. ++ .|++. .|+++. ++++++
T Consensus 143 L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-ds~~v~ 221 (532)
T TIGR02343 143 LEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLE-DTKLIK 221 (532)
T ss_pred HHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcc-cceeEe
Confidence 999998874 367899999998874 34689999999988843 11 24443 688886 579999
Q ss_pred eEEEeecccCCccccccccceeeecCcEEEEecc-----------c--cCCHHHH-----------HHHHHHHHhcCCCE
Q 011725 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNVI-----------RQASLPCMMQGQSL 200 (478)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~-----------~--i~~~~~i-----------~~~le~i~~~g~~l 200 (478)
|++|+++|.+|+|++ .+++|+|+++++ + +++++++ .++++.+.+.|+||
T Consensus 222 Gi~i~~~~~~~~m~~-------~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~l 294 (532)
T TIGR02343 222 GIIIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANI 294 (532)
T ss_pred eEEEecCcCCCCCCe-------eecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 999999999999855 356666666654 2 5666655 67799999999999
Q ss_pred EEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE---
Q 011725 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI--- 277 (478)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~--- 277 (478)
||++++|++.++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|++|+
T Consensus 295 vi~~~~I~~~al~~L~~~~------i~~v~~~~-----~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ 358 (532)
T TIGR02343 295 VICQWGFDDEANHLLLQND------LPAVRWVG-----GHELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREIS 358 (532)
T ss_pred EEeCCCccHHHHHHHHHCC------cEEEEcCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEE
Confidence 9999999999999999765 67899884 667999999999999996 8899999999999987
Q ss_pred EeC--ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Q 011725 278 ATM--DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (478)
Q Consensus 278 i~~--~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a 355 (478)
++. ++++++++|++++ +|||+|||+|+.+++|+||+++||+++++++
T Consensus 359 ig~~~~~~~~i~~~~~~~-------------------------------~~TIllrG~t~~~l~E~er~l~DAl~~v~~~ 407 (532)
T TIGR02343 359 FGTTKDRMLVIEQCKNSK-------------------------------AVTIFIRGGNKMIIEEAKRSIHDALCVVRNL 407 (532)
T ss_pred ecCCcceEEEEECCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 5789999988764 5899999999999999999999999999999
Q ss_pred Hhc-CcccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCeeEe
Q 011725 356 KEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLGYN 428 (478)
Q Consensus 356 ~~~-giVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~----~~~~~Gid 428 (478)
+++ ++|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||
T Consensus 408 i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 487 (532)
T TIGR02343 408 IKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVD 487 (532)
T ss_pred HhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCee
Confidence 998 59999999999999999999765 889999999999999999999999999999988 888752 24579999
Q ss_pred CCCCcccccccCCcccchHhHHHHHHhhh-----HhhhcccccCC
Q 011725 429 PARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVHGG 468 (478)
Q Consensus 429 ~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~~~ 468 (478)
+.+|+++||++.|||||+.||++++..+. +|+++.++-|+
T Consensus 488 ~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 532 (532)
T TIGR02343 488 CLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISPG 532 (532)
T ss_pred CCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccCC
Confidence 99999999999999999999997776654 66677777553
No 24
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-75 Score=630.30 Aligned_cols=400 Identities=18% Similarity=0.193 Sum_probs=349.1
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||++|++ +++|++||+++||||||+++||++||+++.+|++ |+||+.|++||++|.+.+++.
T Consensus 65 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 138 (526)
T cd03339 65 GATILEKMDVDHQIAKLL------VELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEH 138 (526)
T ss_pred HHHHHHHhcccCHHHHHH------HHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 4788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-------cceeee--cCCcccceeEEEe
Q 011725 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVK 144 (478)
Q Consensus 84 L~~~s~~v~----~~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg~~-------~~I~i~--~g~~~~~~~~l~~ 144 (478)
|+++++|++ +.+.|.++|++|+++ .+.|++++++|+..+... ..|++. .|+++. ++++++
T Consensus 139 L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-dS~~v~ 217 (526)
T cd03339 139 LEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLE-DTKLVK 217 (526)
T ss_pred HHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHH-Hcceee
Confidence 999999885 467899999999874 357899999999887431 124444 688885 699999
Q ss_pred eEEEeecccCCccccccccceeeecCcEEEEeccc-------------cCCHHH-----------HHHHHHHHHhcCCCE
Q 011725 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSL 200 (478)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~-------------i~~~~~-----------i~~~le~i~~~g~~l 200 (478)
|++|+++|.+|+|++ .++||+|++++.+ ++++++ +.++++.+.+.|+||
T Consensus 218 Givi~~~~~~~~m~~-------~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 290 (526)
T cd03339 218 GIVIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANL 290 (526)
T ss_pred eEEEecccCCCCCCc-------eecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 999999999999865 3556666666542 556655 667789999999999
Q ss_pred EEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE---
Q 011725 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI--- 277 (478)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~--- 277 (478)
||++++|++.++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|+.|+
T Consensus 291 vi~~~~I~~~al~~L~~~~------I~av~~v~-----~~~LerIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ 354 (526)
T cd03339 291 VICQWGFDDEANHLLLQNG------LPAVRWVG-----GVEIELIAIATGGRIVPR-----FEDLSPEKLGKAGLVREIS 354 (526)
T ss_pred EEeCCCCCHHHHHHHHHCC------CEEEEeCC-----HHHHHHHHHHhCCEEecc-----hhhCChhhcccCceEEEEE
Confidence 9999999999999998765 67999973 566999999999999996 8899999999999987
Q ss_pred Ee--CceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Q 011725 278 AT--MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (478)
Q Consensus 278 i~--~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a 355 (478)
++ +++++|++||+++ +.|||+|||+|+.+++|+||+++|||+++|++
T Consensus 355 ig~~~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~ 403 (526)
T cd03339 355 FGTTKDKMLVIEGCPNS-------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNL 403 (526)
T ss_pred ecCCCcEEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 4688999998765 35999999999999999999999999999999
Q ss_pred HhcC-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCeeEe
Q 011725 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLGYN 428 (478)
Q Consensus 356 ~~~g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~----~~~~~Gid 428 (478)
+++| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||
T Consensus 404 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 483 (526)
T cd03339 404 IRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGID 483 (526)
T ss_pred hhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeee
Confidence 9998 9999999999999999999765 889999999999999999999999999999998 888742 24579999
Q ss_pred CCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 429 PARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 429 ~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
+.+|++.||++.|||||+.||++++..+. +++++.++
T Consensus 484 ~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii 525 (526)
T cd03339 484 CLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVI 525 (526)
T ss_pred cCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceec
Confidence 99999999999999999999998777665 44455543
No 25
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.1e-75 Score=626.53 Aligned_cols=404 Identities=14% Similarity=0.131 Sum_probs=355.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 59 G~TIlk~i~~~hP~a~ll------~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 132 (522)
T TIGR02345 59 GATILKLLDIVHPAAKTL------VDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEK 132 (522)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 5888999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCc----ceeee--cCCcccceeEEEeeE
Q 011725 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND----LITIF--DRKALYNELNFVKGM 146 (478)
Q Consensus 84 L~~~s~~v~-----~~~~l~~vA~~s~~------~~~~~~~li~~A~~~vg~~~----~I~i~--~g~~~~~~~~l~~G~ 146 (478)
|+++++|++ +.+.|.++|++|++ ++++|++++++|+.++++++ .|.+. .|+++. ++++++|+
T Consensus 133 L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~-ds~~v~Gi 211 (522)
T TIGR02345 133 LKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQ-DSVLVNGV 211 (522)
T ss_pred HHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHH-hcceecce
Confidence 999999987 45789999999976 46899999999999998652 22332 688875 58999999
Q ss_pred EEeecccCCccccccccceeeecCcEEEEeccccC-------------CHHH-----------HHHHHHHHHhcCCCEEE
Q 011725 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSNV-----------IRQASLPCMMQGQSLLV 202 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~-------------~~~~-----------i~~~le~i~~~g~~lvI 202 (478)
+|+++|.+|+|.+.|+ .++||+|+++|++++ ++++ +...++.+.+.|.++++
T Consensus 212 v~~~~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~ 287 (522)
T TIGR02345 212 AFKKTFSYAGFEQQPK----KFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVL 287 (522)
T ss_pred EEecccCccccccCCc----eeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9999999999876554 699999999998753 3333 23456667788999999
Q ss_pred EecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEE---e
Q 011725 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---T 279 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i---~ 279 (478)
+.++|++.++++|..+ +|++++++. +++++++|++|||+++++ ++++++++||+|+.|+. +
T Consensus 288 ~~~~i~d~~~~~L~~~------~I~~~~~v~-----~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~ 351 (522)
T TIGR02345 288 SKLPIGDLATQYFADH------NIFCAGRVS-----DEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIG 351 (522)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecCC-----HHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEEC
Confidence 9999999999988764 488999883 667999999999999996 78899999999999974 5
Q ss_pred CceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc-
Q 011725 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (478)
Q Consensus 280 ~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~- 358 (478)
+++++++.|+++++ +|||+|||+|+.+++|+||+++||++++|+++++
T Consensus 352 ~~r~~~~~g~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 400 (522)
T TIGR02345 352 SERYNYFTGCPHAK-------------------------------TCTIILRGGAEQFIEEAERSLHDAIMIVRRALKAR 400 (522)
T ss_pred CeEEEEEEcCCCCc-------------------------------eEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77899999886653 5999999999999999999999999999999998
Q ss_pred CcccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc
Q 011725 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGL 433 (478)
Q Consensus 359 giVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~~~Gid~~~g~ 433 (478)
|+|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|+
T Consensus 401 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~ 480 (522)
T TIGR02345 401 KIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTED 480 (522)
T ss_pred CEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCc
Confidence 69999999999999999998764 899999999999999999999999999999999 999762 4557999999999
Q ss_pred ccccccCCcccchHhHHHHHHhhh-----Hhhhccccc
Q 011725 434 YVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVH 466 (478)
Q Consensus 434 ~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~ 466 (478)
+.||++.|||||+.||++++..+. +|+++.++-
T Consensus 481 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (522)
T TIGR02345 481 IGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIM 518 (522)
T ss_pred ccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 999999999999999997776654 666777763
No 26
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-74 Score=623.78 Aligned_cols=400 Identities=12% Similarity=0.133 Sum_probs=351.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIl~~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (525)
T TIGR02344 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSV 131 (525)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCc-----------ceeee--cCCcccceeEE
Q 011725 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND-----------LITIF--DRKALYNELNF 142 (478)
Q Consensus 84 L~~~s~~v~--~~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg~~~-----------~I~i~--~g~~~~~~~~l 142 (478)
|+++++|++ +.+.|.++|+++.++ ++.|++++++|+..+++++ .|+++ +|+++. ++++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~-dS~l 210 (525)
T TIGR02344 132 LEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIE-DSCV 210 (525)
T ss_pred HHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChH-hcCc
Confidence 999999886 567799999777543 4789999999999998653 14554 588886 5999
Q ss_pred EeeEEEeecccCCccccccccceeeecCcEEEEeccccCC-------------HHHHHHHHH-----------HHHhcCC
Q 011725 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNVIRQASL-----------PCMMQGQ 198 (478)
Q Consensus 143 ~~G~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~-------------~~~i~~~le-----------~i~~~g~ 198 (478)
++|+.|++++.++.| +.+++||+|++++++++. ++++.++++ ++.+.|.
T Consensus 211 v~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~ 283 (525)
T TIGR02344 211 LKGVMINKDVTHPKM-------RRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKP 283 (525)
T ss_pred ccceEEecccCCCCC-------ccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999877754 347899999999987654 456655544 7788888
Q ss_pred CEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccc-cceEE
Q 011725 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI 277 (478)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~-a~~v~ 277 (478)
+||++++.|++.++++|.. .+|+++++. ++++|+|||++|||+++++ ++++++++||+ |+.|+
T Consensus 284 ~vIi~~k~I~dla~~~l~~------~~I~av~~v-----~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~ 347 (525)
T TIGR02344 284 DLVITEKGVSDLAQHYLLK------ANISAIRRV-----RKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFE 347 (525)
T ss_pred CEEEeCCCccHHHHHHHhH------CCceEEecC-----CHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEE
Confidence 8888889999999987775 458999987 6788999999999999996 78899999999 99887
Q ss_pred E---eCceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHH
Q 011725 278 A---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (478)
Q Consensus 278 i---~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~ 354 (478)
+ ++++|++++||++++ .|||+|||+|+.+++|+||+++||++++++
T Consensus 348 ~~~ig~~~~~~~~g~~~~~-------------------------------~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 348 VKKIGDEYFTFFTECKDPK-------------------------------ACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred EEEECCeEEEEEEcCCCCC-------------------------------EEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 678899999987764 599999999999999999999999999999
Q ss_pred HHhc-CcccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCeeE
Q 011725 355 AKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGY 427 (478)
Q Consensus 355 a~~~-giVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~-~~~~Gi 427 (478)
++++ ++|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++||
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 476 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI 476 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeE
Confidence 9988 59999999999999999998765 899999999999999999999999999999999 989762 2 457999
Q ss_pred eCCCCcccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 428 NPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 428 d~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
|+.+|+++||++.|||||+.||++++..+. +|+++.++
T Consensus 477 d~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii 519 (525)
T TIGR02344 477 DGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIV 519 (525)
T ss_pred ECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 999999999999999999999997776554 66677766
No 27
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.9e-74 Score=616.85 Aligned_cols=401 Identities=17% Similarity=0.207 Sum_probs=350.7
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||++|++ +++|++||+++||||||+|+||++||+++.+|++ |+||+.|++||++|.+.++++
T Consensus 57 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03336 57 GATILKSIGVDNPAAKVL------VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREA 130 (517)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC---cceeee--cCCcccceeEEEeeEE
Q 011725 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (478)
Q Consensus 84 L~~~s~~v~-----~~~~l~~vA~~s~~------~~~~~~~li~~A~~~vg~~---~~I~i~--~g~~~~~~~~l~~G~~ 147 (478)
|+++++|++ +.+.|.++|+|+.+ +++.|++++++|+.+++.. ..|.+. +|+++. ++.+++|++
T Consensus 131 L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~-ds~l~~G~v 209 (517)
T cd03336 131 LLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLK-DSYLDEGFL 209 (517)
T ss_pred HHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCcc-ceEEEeeEE
Confidence 999999884 24679999986554 3578999999999998632 234554 588885 699999999
Q ss_pred EeecccCCccccccccceeeecCcEEEEeccccC--------------CHHHHH-----------HHHHHHHhcCCCEEE
Q 011725 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------NSNVIR-----------QASLPCMMQGQSLLV 202 (478)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~--------------~~~~i~-----------~~le~i~~~g~~lvI 202 (478)
+++++.++ + +..++||+|+++|++++ +++++. +.++.+.+.|.++++
T Consensus 210 ~~~~~~~~-~-------~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~ 281 (517)
T cd03336 210 LDKKIGVN-Q-------PKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFI 281 (517)
T ss_pred EecccCCC-C-------CCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986543 2 34799999999998654 455442 346778899999999
Q ss_pred EecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE---Ee
Q 011725 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (478)
+++.|++.++++|..+ +|++||+|+ +++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 282 ~~~~I~~~~~~~l~~~------~I~av~~v~-----~~~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig 345 (517)
T cd03336 282 NRQLIYNYPEQLFADA------GIMAIEHAD-----FDGVERLALVTGGEIAST-----FDHPELVKLGTCKLIEEIMIG 345 (517)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecCC-----HHHHHHHHHHhCCEEecc-----cCCCCcccccccceEEEEEEC
Confidence 9999999999988764 589999995 556999999999999996 8889999999999986 56
Q ss_pred CceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011725 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (478)
Q Consensus 280 ~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g 359 (478)
+++++++.+|+++ ++|||+|||+|+.+++|.||+++||++++|+++++|
T Consensus 346 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 394 (517)
T cd03336 346 EDKLIRFSGVAAG-------------------------------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDT 394 (517)
T ss_pred CeEEEEEEccCCC-------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999998654 469999999999999999999999999999999997
Q ss_pred -cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc
Q 011725 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGL 433 (478)
Q Consensus 360 -iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~~~Gid~~~g~ 433 (478)
+|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|+
T Consensus 395 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (517)
T cd03336 395 RVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGT 474 (517)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCC
Confidence 9999999999999999999765 899999999999999999999999999999998 888762 4567999999999
Q ss_pred ccccccCCcccchHhHHHHHHhhh-----HhhhcccccC
Q 011725 434 YVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVHG 467 (478)
Q Consensus 434 ~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~~ 467 (478)
+.||++.|||||+.||++++..+. +|+++.++..
T Consensus 475 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 513 (517)
T cd03336 475 VGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKC 513 (517)
T ss_pred ccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhc
Confidence 999999999999999997776554 6667777743
No 28
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-74 Score=623.34 Aligned_cols=400 Identities=13% Similarity=0.151 Sum_probs=344.7
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+|+||++||++++++++ |+||+.|++||+.|.+.+++.
T Consensus 60 G~tIlk~i~~~hP~akll------~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 133 (531)
T TIGR02346 60 AATILRELEVQHPAAKLL------VMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEV 133 (531)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4788999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc-ccC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCc--ceeee-------cCCcccceeEEEee
Q 011725 84 LDCQAR-KIT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND--LITIF-------DRKALYNELNFVKG 145 (478)
Q Consensus 84 L~~~s~-~v~---~~~~l~~vA~~s~~-----~~~~~~~li~~A~~~vg~~~--~I~i~-------~g~~~~~~~~l~~G 145 (478)
|+++++ +++ +.+.|.++|+++.+ +++.|++++++|+.++++++ .+.++ .|+++. ++++++|
T Consensus 134 L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~-ds~li~G 212 (531)
T TIGR02346 134 LEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSIS-NSEVLKG 212 (531)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChh-hceeEee
Confidence 999986 764 36789999876663 37899999999999998755 33333 688775 7999999
Q ss_pred EEEeecccCCccccccccceeeecCcEEEEecccc-------------CCH-----------HHHHHHHHHHHhcCCCEE
Q 011725 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLL 201 (478)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i-------------~~~-----------~~i~~~le~i~~~g~~lv 201 (478)
++|++++. + + | ..++||+|++++.++ +++ ++++++++.+.+.|+|||
T Consensus 213 i~~~~~~~-~-~---~----k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lv 283 (531)
T TIGR02346 213 MVFNREAE-G-S---V----KRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVI 283 (531)
T ss_pred eEEeccCC-C-C---c----eeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 99999932 1 1 2 246677777776542 222 346678999999999999
Q ss_pred EEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEE---
Q 011725 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA--- 278 (478)
Q Consensus 202 Ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i--- 278 (478)
|++++|++.++++|.. .+|++||+|+ +.+|+|||.+|||+++++ ++++++++||+|++|++
T Consensus 284 i~~~~I~d~~~~~l~~------~~I~av~~~~-----~~~l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~i 347 (531)
T TIGR02346 284 VTGGSVGDMALHYCEK------YNIMVLKIPS-----KFELRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEI 347 (531)
T ss_pred EECCCcCHHHHHHHHH------CCcEEEecCC-----HHHHHHHHHHHCCEEecc-----cccCCHhHccccceEEEEEE
Confidence 9999999999997774 4599999996 446999999999999986 78899999999999974
Q ss_pred eCceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 011725 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (478)
Q Consensus 279 ~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~ 358 (478)
++++++++.++.. .+++|||+|||+|+.+++|+||+++||++++|+++++
T Consensus 348 g~~~~~~i~~~~~------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~ 397 (531)
T TIGR02346 348 GGQKVTVFKQENG------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKD 397 (531)
T ss_pred CCEEEEEEEccCC------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678899987642 2467999999999999999999999999999999999
Q ss_pred C-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 011725 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (478)
Q Consensus 359 g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~~~Gid~~~g 432 (478)
| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|
T Consensus 398 ~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~ 477 (531)
T TIGR02346 398 NRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAE 477 (531)
T ss_pred CCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCC
Confidence 9 9999999999999999999765 889999999999999999999999999999998 988763 456799999999
Q ss_pred c--ccccccCCcccchHhHHHHHHhhh-----Hhhhccccc
Q 011725 433 L--YVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVH 466 (478)
Q Consensus 433 ~--~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~ 466 (478)
+ ++||++.|||||+.||++++..+. +|+++.++.
T Consensus 478 ~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (531)
T TIGR02346 478 SDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIM 518 (531)
T ss_pred CccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 9 599999999999999997766554 666777663
No 29
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=5e-74 Score=619.20 Aligned_cols=401 Identities=17% Similarity=0.213 Sum_probs=350.8
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+|+||++||+++++|++ |+||+.|++||++|.+.++++
T Consensus 69 G~TIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 142 (533)
T PTZ00212 69 GATILKSVWLDNPAAKIL------VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKA 142 (533)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceeee--cCCcccceeEEEeeEE
Q 011725 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (478)
Q Consensus 84 L~~~s~~v~~-----~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg~~---~~I~i~--~g~~~~~~~~l~~G~~ 147 (478)
|+++++|+++ .+.|.++|+|+.+. .+.|++++++|+..+... ..|.+. +|+++. ++.+++|++
T Consensus 143 L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~-ds~lv~G~v 221 (533)
T PTZ00212 143 LEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLR-DSYLEDGFI 221 (533)
T ss_pred HHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcc-ccEEEEeEE
Confidence 9999999864 56899999866643 467999999999888432 123443 688885 699999999
Q ss_pred EeecccCCccccccccceeeecCcEEEEecccc--------------CCHHHHH-----------HHHHHHHhcCCCEEE
Q 011725 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNSNVIR-----------QASLPCMMQGQSLLV 202 (478)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i--------------~~~~~i~-----------~~le~i~~~g~~lvI 202 (478)
+++++.++ + +.+++||+|+++|+++ ++++++. +.++.+.+.|.++++
T Consensus 222 ~~~~~~~~-~-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv 293 (533)
T PTZ00212 222 LEKKIGVG-Q-------PKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFI 293 (533)
T ss_pred EecccCCC-C-------CccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986543 2 3479999999999976 5555432 246678889999999
Q ss_pred EecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE---Ee
Q 011725 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (478)
+++.|++.++++|..+ +|++||++ ++++++|||++|||+++++ ++++++++||+|++|+ ++
T Consensus 294 ~~~~I~d~a~~~L~~~------~I~avr~v-----~~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig 357 (533)
T PTZ00212 294 NRQLIYNYPEQLFAEA------GIMAIEHA-----DFDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIG 357 (533)
T ss_pred eCCCccHHHHHHHHHC------CCEEEecC-----CHHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEEC
Confidence 9999999999988764 48999987 3567999999999999996 8889999999999998 78
Q ss_pred CceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011725 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (478)
Q Consensus 280 ~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g 359 (478)
+++|+++.+|..+ ++|||+|||+|+.+++|+||+++|||+++|+++++|
T Consensus 358 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~ 406 (533)
T PTZ00212 358 EDKLIRFSGCAKG-------------------------------EACTIVLRGASTHILDEAERSLHDALCVLSQTVKDT 406 (533)
T ss_pred CeEEEEEEccCCC-------------------------------CEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8999999988543 569999999999999999999999999999999997
Q ss_pred -cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCc
Q 011725 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGL 433 (478)
Q Consensus 360 -iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~---~~~~~~Gid~~~g~ 433 (478)
+|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++ +++.++|||+.+|+
T Consensus 407 ~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~ 486 (533)
T PTZ00212 407 RVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGT 486 (533)
T ss_pred CEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCc
Confidence 9999999999999999999765 899999999999999999999999999999998 88875 34567999999999
Q ss_pred ccccccCCcccchHhHHHHHHhhh-----HhhhcccccC
Q 011725 434 YVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVHG 467 (478)
Q Consensus 434 ~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~~ 467 (478)
+.||++.|||||+.||++++..+. +|+++.++..
T Consensus 487 i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~ 525 (533)
T PTZ00212 487 VGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRC 525 (533)
T ss_pred ccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhc
Confidence 999999999999999997776654 6667887744
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.7e-74 Score=610.83 Aligned_cols=383 Identities=11% Similarity=0.132 Sum_probs=340.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (480)
T cd03337 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKI 131 (480)
T ss_pred HHHHHHhccccChHHHHH------HHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--cc---------eeee--cCCcccceeEE
Q 011725 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--DL---------ITIF--DRKALYNELNF 142 (478)
Q Consensus 84 L~~~s~~v~--~~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg~~--~~---------I~i~--~g~~~~~~~~l 142 (478)
|+++++|++ +.+.|.++|+++.++ ++.|++++++|+..++++ +. |+++ +|++.. ++++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~-ds~l 210 (480)
T cd03337 132 LEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIE-DSRV 210 (480)
T ss_pred HHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHH-hccc
Confidence 999999986 778899999998873 468999999999999754 21 4454 488875 5999
Q ss_pred EeeEEEeecccCCccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCC
Q 011725 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCT 222 (478)
Q Consensus 143 ~~G~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~ 222 (478)
++|++|++++.+|.| +.+++||+|++++++++. |||++++|++.++++|..|
T Consensus 211 i~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~~---- 262 (480)
T cd03337 211 LDGVMLNKDVTHPKM-------RRRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVKA---- 262 (480)
T ss_pred ccceEEeccCCCCCC-------CcEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHHC----
Confidence 999999999988765 347899999999998775 8899999999999998876
Q ss_pred CCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccc-cceEE---EeCceEEEEcCCCChhhHHHH
Q 011725 223 TEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI---ATMDNVVIIGGSGELVDIQER 298 (478)
Q Consensus 223 ~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~-a~~v~---i~~~~~~~i~g~~~~~~i~~r 298 (478)
+|++|++. ++++|+|||++|||+++++ ++++++++||+ |+.++ +++++++++++|+++
T Consensus 263 --~I~~v~~v-----~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~------ 324 (480)
T cd03337 263 --GITALRRV-----RKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP------ 324 (480)
T ss_pred --CcEEEEeC-----CHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC------
Confidence 48999987 5778999999999999997 78899999999 55544 356788999998765
Q ss_pred HHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc-CcccChhHHHHHHHHHHHh
Q 011725 299 CEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (478)
Q Consensus 299 ~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~-giVpGGGa~el~~s~~L~~ 377 (478)
+.|||+|||+|+.+++|.||+++||++++++++++ ++|||||++|+++|.+|++
T Consensus 325 -------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~ 379 (480)
T cd03337 325 -------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSE 379 (480)
T ss_pred -------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999 5999999999999999999
Q ss_pred hcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCeeEeCCCCcccccccCCcccchHhHHH
Q 011725 378 LQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGYNPARGLYVQVWGCRSTETCTIRIC 451 (478)
Q Consensus 378 ~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~-~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~ 451 (478)
++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++|+|+.+|++.||++.|||||+.||++
T Consensus 380 ~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~ 459 (480)
T cd03337 380 KAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQ 459 (480)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHH
Confidence 8775 899999999999999999999999999999999 889762 3 457999999999999999999999999997
Q ss_pred HHHhhh-----Hhhhcccc
Q 011725 452 KGHKYD-----FIEECNLV 465 (478)
Q Consensus 452 ~~~~~~-----~~~~~~~~ 465 (478)
++..+. +|+++.++
T Consensus 460 ~l~~A~e~a~~iL~id~ii 478 (480)
T cd03337 460 TYKTAIEAACMLLRIDDIV 478 (480)
T ss_pred HHHHHHHHHHHHhhhhhee
Confidence 776654 55566554
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.6e-73 Score=608.39 Aligned_cols=399 Identities=17% Similarity=0.192 Sum_probs=347.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||++|++ +++|++||+++||||||+|+||++||++|++|++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~i~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02341 58 GATILKSIGVDNPAAKVL------VDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEA 131 (519)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceeee--cCCcccceeEEEeeEE
Q 011725 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (478)
Q Consensus 84 L~~~s~~v~~-----~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg~~---~~I~i~--~g~~~~~~~~l~~G~~ 147 (478)
|+++++|+++ .++|.++|+++++. .+.|++++++|+..+... ..|++. .|+++. ++.+++|++
T Consensus 132 L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~-~s~l~~G~v 210 (519)
T TIGR02341 132 LKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLN-DSYLDEGFL 210 (519)
T ss_pred HHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcc-cceEEeeEE
Confidence 9999999853 46899999888863 356899999999887431 235665 688885 799999999
Q ss_pred EeecccCCccccccccceeeecCcEEEEeccccCC--------------HHHHH-----------HHHHHHHhcCCCEEE
Q 011725 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN--------------SNVIR-----------QASLPCMMQGQSLLV 202 (478)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~--------------~~~i~-----------~~le~i~~~g~~lvI 202 (478)
+++++.++ + +..++||+|+++|++++. ++++. ..++.+.+.|.++++
T Consensus 211 ~~~~~~~~-~-------~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~ 282 (519)
T TIGR02341 211 LEKKIGVN-Q-------PKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFI 282 (519)
T ss_pred EeccCCCC-C-------ceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99986442 2 337899999999987653 32222 236678899999999
Q ss_pred EecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE---Ee
Q 011725 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (478)
+++.|++.++++|..+ +|+++|+|+ +++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 283 ~~~~I~~~~~~~l~~~------~I~~v~~~~-----~~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig 346 (519)
T TIGR02341 283 NRQLIYNYPEQLFADA------GVMAIEHAD-----FEGIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIG 346 (519)
T ss_pred ECCcCCHHHHHHHHHC------CcEEEecCC-----HHHHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEEC
Confidence 9999999999987754 589999995 557999999999999996 7889999999999886 56
Q ss_pred CceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc-
Q 011725 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (478)
Q Consensus 280 ~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~- 358 (478)
+++++++.+|+++ ++|||+|||+|+.+++|+||+++||++++|+++++
T Consensus 347 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~ 395 (519)
T TIGR02341 347 EDKLLKFSGVKLG-------------------------------EACTIVLRGATQQILDESERSLHDALCVLSQTVKES 395 (519)
T ss_pred CEEEEEEEcCCCC-------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999998754 46999999999999999999999999999999998
Q ss_pred CcccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc
Q 011725 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGL 433 (478)
Q Consensus 359 giVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~~~Gid~~~g~ 433 (478)
++|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. +..++|||+.+|+
T Consensus 396 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 475 (519)
T TIGR02341 396 RTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGE 475 (519)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCc
Confidence 59999999999999999998765 899999999999999999999999999999999 889763 4557999999999
Q ss_pred ccccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 434 YVQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 434 ~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
+.||++.|||||+.||++++..+. +|+++.++
T Consensus 476 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii 512 (519)
T TIGR02341 476 IADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNII 512 (519)
T ss_pred ccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999997776654 66677766
No 32
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-74 Score=563.53 Aligned_cols=394 Identities=14% Similarity=0.146 Sum_probs=350.5
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011725 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~L 84 (478)
-||||.|++.||+||.| | ++|++||.||||||||||+||+|+|+++..+++ |+||+.|+++|++|...+++.|
T Consensus 63 ATIlKlldivhPaaktl--V----dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki 136 (543)
T KOG0361|consen 63 ATILKLLDIVHPAAKTL--V----DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKI 136 (543)
T ss_pred HHHHHHHhhcChhHHHH--H----HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999 4 677999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--C----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCc---ce--eeecCCcccceeEEEeeEE
Q 011725 85 DCQARKIT--T----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND---LI--TIFDRKALYNELNFVKGMK 147 (478)
Q Consensus 85 ~~~s~~v~--~----~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg~~~---~I--~i~~g~~~~~~~~l~~G~~ 147 (478)
++++..++ + ++.|.+.|.|++++ .++|+++++||+..++.+. .| ...+|++++ +|.+++|+.
T Consensus 137 ~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~-dS~lv~GVA 215 (543)
T KOG0361|consen 137 KELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAME-DSLLVNGVA 215 (543)
T ss_pred HHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccc-hhhhcccee
Confidence 99998775 2 35678888887753 5799999999999987432 23 444899997 689999999
Q ss_pred EeecccCCccccccccceeeecCcEEEEeccc-------------cCCHHHHH-----------HHHHHHHhcCCCEEEE
Q 011725 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIR-----------QASLPCMMQGQSLLVV 203 (478)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~-------------i~~~~~i~-----------~~le~i~~~g~~lvIi 203 (478)
|.+.|.+..|..+|+ .+.||+|+++|.. +.+++++. ..|+++..+|+++|+.
T Consensus 216 FkKtFsYAGfEqqPK----k~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLS 291 (543)
T KOG0361|consen 216 FKKTFSYAGFEQQPK----KFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLS 291 (543)
T ss_pred eeehccccchhhCcc----ccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEe
Confidence 999999999977776 6999999999864 34454433 4588899999999988
Q ss_pred ecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE---EeC
Q 011725 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (478)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~---i~~ 280 (478)
.=.|.|.|-++|+...+ .||-|.| +++|.|+..+|||++.++ .+++.++.||.|..|+ +++
T Consensus 292 kLpIGD~ATQyFAdrdi-----FCAGRV~------~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C~~FeE~QvG~ 355 (543)
T KOG0361|consen 292 KLPIGDLATQYFADRDI-----FCAGRVP------EEDLNRVMQACGGSIQTT-----VSDIKEEVLGTCALFEERQVGG 355 (543)
T ss_pred cccchHHHHHHhhccCc-----eecCcCC------HHHHHHHHHhcCcchhhh-----hhhcchhhcchhhhHHHHhhcc
Confidence 88999999988875432 4555554 788999999999999996 6889999999999996 799
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 011725 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (478)
Q Consensus 281 ~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g- 359 (478)
++|.+|+||+.. ++||+++||+.++.++|.||++|||++++|.|++..
T Consensus 356 eRyN~Fegcp~a-------------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~ 404 (543)
T KOG0361|consen 356 ERYNLFEGCPKA-------------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS 404 (543)
T ss_pred hhhhhhcCCCcc-------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence 999999999865 459999999999999999999999999999999986
Q ss_pred cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCcc
Q 011725 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGLY 434 (478)
Q Consensus 360 iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~---~~~~~~Gid~~~g~~ 434 (478)
+|+|||++||++|++|++|+.. .|++|+-+.+|++|||.|||+||+|||+|..++ +|||. +|..|+|+|+.++.+
T Consensus 405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i 484 (543)
T KOG0361|consen 405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGI 484 (543)
T ss_pred EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccch
Confidence 9999999999999999999986 999999999999999999999999999999999 99987 367899999999999
Q ss_pred cccccCCcccchHhHHHHHHhhh
Q 011725 435 VQVWGCRSTETCTIRICKGHKYD 457 (478)
Q Consensus 435 ~dm~~~gI~Dp~~Vk~~~~~~~~ 457 (478)
.||++.+||||..||++++.+++
T Consensus 485 ~dn~~~~VwEP~~VK~Nai~aat 507 (543)
T KOG0361|consen 485 ADNFEKFVWEPSIVKINAITAAT 507 (543)
T ss_pred hhHHHhhccChHHHHHHHHHHHH
Confidence 99999999999999999888765
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.6e-72 Score=594.84 Aligned_cols=385 Identities=15% Similarity=0.179 Sum_probs=336.9
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.+++.
T Consensus 50 G~tIlk~l~~~hP~a~ll------~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (472)
T cd03341 50 AATILRELEVQHPAAKLL------VMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEI 123 (472)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 5888999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc-cC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccC--cceeee-------cCCcccceeEEEee
Q 011725 84 LDCQARK-IT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEN--DLITIF-------DRKALYNELNFVKG 145 (478)
Q Consensus 84 L~~~s~~-v~---~~~~l~~vA~~s~~-----~~~~~~~li~~A~~~vg~~--~~I~i~-------~g~~~~~~~~l~~G 145 (478)
|++++.+ ++ +.+.+.++++++.+ +++.|++++++|+.+++++ |.+.++ +|++.. ++++++|
T Consensus 124 L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~-ds~lv~G 202 (472)
T cd03341 124 LEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLE-DSKVVRG 202 (472)
T ss_pred HHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcc-cceEEee
Confidence 9999865 43 45678888877753 4678999999999999865 543332 688875 5899999
Q ss_pred EEEeecccCCccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCc
Q 011725 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (478)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~ 225 (478)
++|++.+.+ +..+++||+|++++++++. |+||||++++|++.++++|.. .+
T Consensus 203 iv~~~~~~~---------~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~l~~------~~ 253 (472)
T cd03341 203 MVFKREPEG---------SVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHYCNK------YG 253 (472)
T ss_pred EEEccccCC---------CceeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHHHHH------CC
Confidence 999875321 2247999999999999886 889999999999999997553 46
Q ss_pred EEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEe---CceEEEEcCCCChhhHHHHHHHH
Q 011725 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQL 302 (478)
Q Consensus 226 i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~---~~~~~~i~g~~~~~~i~~r~~~l 302 (478)
|+++|+|+ +++|+|||++|||+++++ ++++++++||+|++|++. +++++++.++++.
T Consensus 254 I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------- 313 (472)
T cd03341 254 IMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED---------- 313 (472)
T ss_pred eEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------
Confidence 99999995 667999999999999996 788889999999999864 4889999987541
Q ss_pred HHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccChhHHHHHHHHHHHhhcCC
Q 011725 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (478)
Q Consensus 303 ~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g-iVpGGGa~el~~s~~L~~~~~~ 381 (478)
+++|||+|||+|+.+++|.||+++||++++|+++++| +|||||++|+++|..|++++..
T Consensus 314 --------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~ 373 (472)
T cd03341 314 --------------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEK 373 (472)
T ss_pred --------------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhc
Confidence 3579999999999999999999999999999999999 9999999999999999998764
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCC--cccccccCCcccchHhHHHHHH
Q 011725 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARG--LYVQVWGCRSTETCTIRICKGH 454 (478)
Q Consensus 382 -~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~---~~~~~~Gid~~~g--~~~dm~~~gI~Dp~~Vk~~~~~ 454 (478)
++++++++++|++||+.||++||+|||+|+.++ .+|+. +++.++|||+.+| ++.||++.|||||+.||++++.
T Consensus 374 ~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~ 453 (472)
T cd03341 374 TPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIK 453 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHH
Confidence 789999999999999999999999999999998 88865 3456799999999 9999999999999999997776
Q ss_pred hhh-----Hhhhcccc
Q 011725 455 KYD-----FIEECNLV 465 (478)
Q Consensus 455 ~~~-----~~~~~~~~ 465 (478)
.+. +|+++.++
T Consensus 454 ~A~e~a~~iL~id~ii 469 (472)
T cd03341 454 LATEAAVTVLRVDQII 469 (472)
T ss_pred HHHHHHHHHhhhccee
Confidence 654 55566654
No 34
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.8e-71 Score=591.29 Aligned_cols=375 Identities=24% Similarity=0.319 Sum_probs=339.0
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|++.||+++++ +++|++||+++||||||+++||++|++++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hp~a~ll------~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (464)
T cd00309 50 GATILKEIEVEHPAAKLL------VEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEI 123 (464)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999 5788999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc--cCCHHHHHHHHHHhcC------CChhHHHHHHHHHHhhcc------Ccceeee--cCCcccceeEEEeeEE
Q 011725 84 LDCQARK--ITTFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMK 147 (478)
Q Consensus 84 L~~~s~~--v~~~~~l~~vA~~s~~------~~~~~~~li~~A~~~vg~------~~~I~i~--~g~~~~~~~~l~~G~~ 147 (478)
|+++++| +.+.+.+.++|+++++ +++.+++++++|+.++++ .+.|+++ .|+++. +++++.|++
T Consensus 124 L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~-ds~li~Gi~ 202 (464)
T cd00309 124 LKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLE-DSELVVGMV 202 (464)
T ss_pred HHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcc-cceeeeeEE
Confidence 9999998 5678899999999998 578899999999999987 5667776 577764 689999999
Q ss_pred EeecccCCccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEE
Q 011725 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVC 227 (478)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~ 227 (478)
|+++|.+|+| +..++||+|++++++++. |+++.++|++.++++|.. .+|+
T Consensus 203 ~~~~~~~~~m-------~~~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~------~~I~ 252 (464)
T cd00309 203 FDKGYLSPYM-------PKRLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLAK------LGIM 252 (464)
T ss_pred EecCCCCCCC-------ceeecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHHH------CCeE
Confidence 9999999988 337999999999999886 666667799999998886 4599
Q ss_pred EEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEE---eCceEEEEcCCCChhhHHHHHHHHHH
Q 011725 228 IIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TMDNVVIIGGSGELVDIQERCEQLRS 304 (478)
Q Consensus 228 avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i---~~~~~~~i~g~~~~~~i~~r~~~l~~ 304 (478)
++++. ++++|+|||++|||+++++ ++++++++||+|+.|++ ++++++++.+++.+
T Consensus 253 ~v~~~-----~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------ 310 (464)
T cd00309 253 AVRRV-----RKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG------------ 310 (464)
T ss_pred EEEeC-----CHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEcCeeEEEEEecCCC------------
Confidence 99997 5778999999999999996 78888999999999975 45678888877543
Q ss_pred HhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc-CcccChhHHHHHHHHHHHhhcCC-C
Q 011725 305 TIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-N 382 (478)
Q Consensus 305 ~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~-giVpGGGa~el~~s~~L~~~~~~-~ 382 (478)
+.|||+|||+|+.+++|+||+++||++++++++++ ++|||||++|+++|..|++++.. +
T Consensus 311 -------------------~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~ 371 (464)
T cd00309 311 -------------------KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLP 371 (464)
T ss_pred -------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccc
Confidence 46999999999999999999999999999999999 59999999999999999999874 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh
Q 011725 383 SDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD 457 (478)
Q Consensus 383 ~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~ 457 (478)
+++++++++|++||+.||++|++|||+|+.++ .+|++. +..++|+|..+|++.||++.|||||+.||++++..+.
T Consensus 372 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~ 450 (464)
T cd00309 372 GKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSAT 450 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 888763 2347899999999999999999999999998776654
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=2.5e-66 Score=553.71 Aligned_cols=400 Identities=19% Similarity=0.294 Sum_probs=352.6
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
+.|||++|++.||+++++ ++++++||+++||||||+++|+++||+++.++++ |+||..|++||+.|.+.+++.
T Consensus 31 g~tIl~~l~~~~P~~~ll------~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~ 104 (485)
T PF00118_consen 31 GATILKSLKINHPIAKLL------VEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEY 104 (485)
T ss_dssp HHHHHHHSTBSSHHHHHH------HHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhccchhhhH------HHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence 569999999999999999 5788999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCH-HHHHHHHHHhcCCC------hhHHHHHHHHHHhhccC---cceee--ecCCcccceeEEEeeEEEeec
Q 011725 84 LDCQARKITTF-EEIAQVGTTAANGD------GEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMKLEWG 151 (478)
Q Consensus 84 L~~~s~~v~~~-~~l~~vA~~s~~~~------~~~~~li~~A~~~vg~~---~~I~i--~~g~~~~~~~~l~~G~~~~~g 151 (478)
|+++++++++. +.+.++|+++++++ +.|++++++|+..+..+ +.+.+ ..|++. .++++++|++|+++
T Consensus 105 l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~-~dS~li~Giv~~~~ 183 (485)
T PF00118_consen 105 LEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSI-SDSELINGIVLDKG 183 (485)
T ss_dssp HHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSS-GGEEEESEEEESSS
T ss_pred hhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhhccccc-cccccccceeeecc
Confidence 99999998866 89999999999876 79999999999444211 12322 256666 57999999999999
Q ss_pred ccCCccccccccceeeecCcEEEEeccccCCHHH-----------------------HHHHHHHHHhcCCCEEEEecCcc
Q 011725 152 LKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-----------------------IRQASLPCMMQGQSLLVVAEDVE 208 (478)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~-----------------------i~~~le~i~~~g~~lvIi~~~i~ 208 (478)
|.++.| +..+++|+|++++.+++.... +.++++++.+.|+++||++++|+
T Consensus 184 ~~~~~~-------~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~ 256 (485)
T PF00118_consen 184 FSSPNM-------PKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSID 256 (485)
T ss_dssp BSSTTS-------BSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBT
T ss_pred cccccc-------ccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccc
Confidence 999854 336799999999998877666 88999999999999999999999
Q ss_pred hhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceE---EEeCceEEE
Q 011725 209 NEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVI 285 (478)
Q Consensus 209 ~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v---~i~~~~~~~ 285 (478)
+.++++|..|+ |.+++.. ++++|++||.+|||+++++ +++++++++|+|+.| +++++++++
T Consensus 257 ~~~l~~l~~~~------I~~i~~v-----~~~~l~~i~~~tg~~ii~~-----~~~l~~~~lG~~~~v~~~~i~~~~~~~ 320 (485)
T PF00118_consen 257 DEALQYLNKNG------ILVIRRV-----SKEDLERIARATGASIISS-----LDDLSDEDLGFCKSVEEREIGNKKYIF 320 (485)
T ss_dssp HHHHHHHHHCT------HEEESSE-----HHHHHHHHHHHHTSBEBSS-----CGGSTGGGSEEEEEEEEEEETSSEEEE
T ss_pred cccchhhhhhh------hhccccc-----hHHHHHhhhcccCCcEecc-----cccccchhhhhhhhhhhcccccccccc
Confidence 99999888765 6788877 5778999999999999997 688888889999999 678999999
Q ss_pred EcC--CCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-ccc
Q 011725 286 IGG--SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVP 362 (478)
Q Consensus 286 i~g--~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g-iVp 362 (478)
+.+ +. +++.+||+|||+|+.+++|+||+++||+++++++++++ +||
T Consensus 321 ~~~~~~~-------------------------------~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp 369 (485)
T PF00118_consen 321 IEGIGCL-------------------------------SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVP 369 (485)
T ss_dssp EEEHSES-------------------------------SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred ccccccc-------------------------------ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceee
Confidence 984 32 35679999999999999999999999999999999975 999
Q ss_pred ChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCeeEeCCCCcccccc
Q 011725 363 GSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPARGLYVQVW 438 (478)
Q Consensus 363 GGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~--~~~~~~Gid~~~g~~~dm~ 438 (478)
|||++|++++.+|++++.. ++++++++++|++||+.||++|++|||+|+.++ ++|+. .++.++|||+.+|++.||+
T Consensus 370 GGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~ 449 (485)
T PF00118_consen 370 GGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMK 449 (485)
T ss_dssp TTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETT
T ss_pred cCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccc
Confidence 9999999999999888775 889999999999999999999999999999999 98977 3456999999999999999
Q ss_pred cCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 439 GCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 439 ~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
+.|||||+.||++++..+. +|+++.++
T Consensus 450 ~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI 481 (485)
T PF00118_consen 450 EAGILDPLLVKISALKSAVEIASLILRIDEII 481 (485)
T ss_dssp TTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997766554 55566554
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-66 Score=505.45 Aligned_cols=398 Identities=17% Similarity=0.223 Sum_probs=344.4
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011725 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~L 84 (478)
-||||.+.+.||+||+| | ++|+.||+|+|||||||+|||++||++|++|+. .+||+.|+.||++|...+++.|
T Consensus 63 AtILksi~vDnpaAkvL--v----~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL 136 (527)
T KOG0363|consen 63 ATILKSIGVDNPAAKVL--V----DISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEAL 136 (527)
T ss_pred HHHHHhcCCCCchhhhe--e----ccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999 4 677999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC-C----HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCc---ceee--ecCCcccceeEEEeeEEE
Q 011725 85 DCQARKIT-T----FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITI--FDRKALYNELNFVKGMKL 148 (478)
Q Consensus 85 ~~~s~~v~-~----~~~l~~vA~~s~~------~~~~~~~li~~A~~~vg~~~---~I~i--~~g~~~~~~~~l~~G~~~ 148 (478)
.+.++.-. + +++|.++|+|... +.++|+++.++|+.++...+ .|.| ..|+++. +|.+-+|+.+
T Consensus 137 ~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~-dSfLDeGFlL 215 (527)
T KOG0363|consen 137 TKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLE-DSFLDEGFLL 215 (527)
T ss_pred HHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccc-ccccccccee
Confidence 99887643 2 4799999976553 35789999999999985433 2333 4788886 5889999999
Q ss_pred eecccCCccccccccceeeecCcEEEEecccc--------------CCH-----------HHHHHHHHHHHhcCCCEEEE
Q 011725 149 EWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNS-----------NVIRQASLPCMMQGQSLLVV 203 (478)
Q Consensus 149 ~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i--------------~~~-----------~~i~~~le~i~~~g~~lvIi 203 (478)
++.+-- .+|+ .++||+||+.|+++ .+. +.+++.+++|.+.|.|+.|-
T Consensus 216 ~K~igv----~qpk----riena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiN 287 (527)
T KOG0363|consen 216 DKKIGV----NQPK----RIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFIN 287 (527)
T ss_pred ccccCC----CCcc----cccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEee
Confidence 987432 2344 68999999988642 121 24667789999999998887
Q ss_pred ecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE---EeC
Q 011725 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (478)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~---i~~ 280 (478)
.+-|-+...+.|.. .+|++|....|. .+|||+..|||.++|+ |++++...||+|+.++ +++
T Consensus 288 RQLiYnyPeqLf~d------agi~aIEHADFd-----GiERLalvtGGeI~ST-----Fd~p~~~klG~C~~IeeimiGe 351 (527)
T KOG0363|consen 288 RQLIYNYPEQLFAD------AGIMAIEHADFD-----GIERLALVTGGEIVST-----FDNPELVKLGECDLIEEIMIGE 351 (527)
T ss_pred hhHhhcCHHHHHhh------cCcceeecccch-----hHHHHhhcccceeeec-----cCCcchhccccchhhHHHhcCc
Confidence 77777777765553 468999998654 5999999999999997 8999999999999875 799
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 011725 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (478)
Q Consensus 281 ~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g- 359 (478)
|++.-|.|++-.+ .|||++||+|++.+||.||++|||||++....++.
T Consensus 352 d~li~FSGv~~Ge-------------------------------ActIVlrGat~q~LDEaeRslHDALcVLaqtv~esr 400 (527)
T KOG0363|consen 352 DKLIKFSGVKLGE-------------------------------ACTIVLRGATQQILDEAERSLHDALCVLAQTVKESR 400 (527)
T ss_pred cceeeeccccccc-------------------------------ceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 9999999986543 59999999999999999999999999999998885
Q ss_pred cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCcc
Q 011725 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGLY 434 (478)
Q Consensus 360 iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~~~Gid~~~g~~ 434 (478)
+|.|||++||.+++.+.+++.. +|++..++++|++||..+|.+||+|||||+.++ .+|++. +..++|+|+++|++
T Consensus 401 vv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i 480 (527)
T KOG0363|consen 401 VVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEI 480 (527)
T ss_pred eeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCch
Confidence 9999999999999999999886 999999999999999999999999999999999 999984 66789999999999
Q ss_pred cccccCCcccchHhHHHHHHhhh-----Hhhhcccc
Q 011725 435 VQVWGCRSTETCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 435 ~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
.||.+.||+|+++||.+...+++ +++.++++
T Consensus 481 ~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Ii 516 (527)
T KOG0363|consen 481 GDMRELGIVESLKVKQAVVSSASEAAEMILRVDNII 516 (527)
T ss_pred hhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhh
Confidence 99999999999999997766555 78888888
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-66 Score=508.84 Aligned_cols=412 Identities=17% Similarity=0.213 Sum_probs=348.4
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011725 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~L 84 (478)
-||||.|.+.||+||+| | ++|+.||.|+||||||||+|||+||+.+++|++ |+||+.|...|+.|.+.++++|
T Consensus 69 aTILk~m~vlhP~akmL--v----elS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il 142 (534)
T KOG0358|consen 69 ATILKQMNVLHPAAKML--V----ELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDIL 142 (534)
T ss_pred HHHHHHHhhhChHHHHH--H----HhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHH
Confidence 58999999999999999 5 566899999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc-Cc-------ceee--ecCCcccceeEEEeeE
Q 011725 85 DCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE-ND-------LITI--FDRKALYNELNFVKGM 146 (478)
Q Consensus 85 ~~~s~~v~--~~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg~-~~-------~I~i--~~g~~~~~~~~l~~G~ 146 (478)
.+++.|++ |++.|.+-|+||.|+ +..++.+.++|+.++-. +. .|++ +.|+++ |++++++|+
T Consensus 143 ~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtv-dDte~i~gl 221 (534)
T KOG0358|consen 143 DEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTV-DDTELIKGL 221 (534)
T ss_pred HhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCcc-chhhhhcce
Confidence 99999886 778899999998873 56789999999998743 21 2443 368888 579999999
Q ss_pred EEeecccCCcccccccccee-----eecCcE------EEEeccc-----cC-CHHHHHHHHHHHHhcCCCEEEEecCcch
Q 011725 147 KLEWGLKSPYFFTHKNKKEC-----VLDGAL------VLIYDTK-----IS-NSNVIRQASLPCMMQGQSLLVVAEDVEN 209 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~-----~l~~p~------Il~~d~~-----i~-~~~~i~~~le~i~~~g~~lvIi~~~i~~ 209 (478)
+|+.......-+++.++..+ .++.|+ |++.|.. ++ .-+.+++++++|+++|+++++++++|-.
T Consensus 222 vl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILR 301 (534)
T KOG0358|consen 222 VLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILR 301 (534)
T ss_pred EEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHH
Confidence 99987553322332222221 334444 3333311 11 1135778999999999999999999999
Q ss_pred hHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE-E---eCceEEE
Q 011725 210 EVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI-A---TMDNVVI 285 (478)
Q Consensus 210 ~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~-i---~~~~~~~ 285 (478)
++++.|+.+.+.. ++|++||..+ ++++|.+|+.+|++++++ ++-++++.||+++.++ + ++.+++-
T Consensus 302 davsDLAlHfL~k-lkimvikdie-----Rediefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk 370 (534)
T KOG0358|consen 302 DAVSDLALHFLAK-LKIMVIKDIE-----REDIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVK 370 (534)
T ss_pred HHHHHHHHHHHHh-CcEEEEcccc-----HhhHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEE
Confidence 9999998887664 8999999874 556999999999999997 8999999999999986 3 4557888
Q ss_pred EcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccCh
Q 011725 286 IGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGS 364 (478)
Q Consensus 286 i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g-iVpGG 364 (478)
+.|+.++ |..++|++||+++..++|.||++|||||++|+..+.. .+|||
T Consensus 371 ~tg~~n~------------------------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GG 420 (534)
T KOG0358|consen 371 ITGIQNA------------------------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGG 420 (534)
T ss_pred EEEeecC------------------------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCC
Confidence 8887654 5789999999999999999999999999999998875 99999
Q ss_pred hHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccc
Q 011725 365 GVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGLYVQVWG 439 (478)
Q Consensus 365 Ga~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~~~Gid~~~g~~~dm~~ 439 (478)
|+.|++++..|..++.. .|.+.|++++|++|||.+|.+||+|||++|..+ .+||+. +..++|+|++.|.+.||++
T Consensus 421 GapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~e 500 (534)
T KOG0358|consen 421 GAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILE 500 (534)
T ss_pred CCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHH
Confidence 99999999999999886 899999999999999999999999999999988 889873 5578999999999999999
Q ss_pred CCcccchHhHHHHHHhh-----hHhhhcccc
Q 011725 440 CRSTETCTIRICKGHKY-----DFIEECNLV 465 (478)
Q Consensus 440 ~gI~Dp~~Vk~~~~~~~-----~~~~~~~~~ 465 (478)
..|+.|+.|..+++.++ ++++++++|
T Consensus 501 e~VvQPllVs~SaitlA~Etvr~ILKIDDIv 531 (534)
T KOG0358|consen 501 ENVVQPLLVSISAITLATETVRSILKIDDIV 531 (534)
T ss_pred HhcccceeeeHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999887766554 578888887
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-61 Score=485.90 Aligned_cols=408 Identities=15% Similarity=0.204 Sum_probs=351.4
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011725 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~L 84 (478)
-+||+.+.++||++|+| | ++++.||+|+|||||+|+++|++|++++.+|+. ++||+.|+.||+.|+..+++++
T Consensus 62 AtiL~~l~V~HPa~KiL--v----elaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i 135 (545)
T KOG0360|consen 62 ATILSLLEVEHPAAKVL--V----ELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYI 135 (545)
T ss_pred HHHHHhhhhcchHHHHH--H----HHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHh
Confidence 58999999999999999 5 566999999999999999999999999999999 9999999999999999999999
Q ss_pred hc-cccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---Ccc-------eeee--cCCcccceeEEE
Q 011725 85 DC-QARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---NDL-------ITIF--DRKALYNELNFV 143 (478)
Q Consensus 85 ~~-~s~~v~--~~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg~---~~~-------I~i~--~g~~~~~~~~l~ 143 (478)
.+ ++.|++ ..+-|.++|++++.+ .++|++++++|+..+.. +|. ++|- .|.+. .||.++
T Consensus 136 ~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~-~eS~l~ 214 (545)
T KOG0360|consen 136 TEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQ-IESMLL 214 (545)
T ss_pred hccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccc-hhheee
Confidence 86 567776 467899999988753 57999999999987642 231 3332 57776 479999
Q ss_pred eeEEEeecccCCccccccccceeeecCcEEEEeccc-------------cCCHHHH-----------HHHHHHHHhcCCC
Q 011725 144 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVI-----------RQASLPCMMQGQS 199 (478)
Q Consensus 144 ~G~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~-------------i~~~~~i-----------~~~le~i~~~g~~ 199 (478)
.|+.++....+..|+ ..+.++||+++|.. |.+++++ ++.++++..+|++
T Consensus 215 ~GyaLnc~~asq~m~-------~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~gan 287 (545)
T KOG0360|consen 215 PGYALNCSVASQMMP-------LRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGAN 287 (545)
T ss_pred cceeeeccHhhhccc-------cccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCc
Confidence 999999998887663 35779999999974 3455432 2457788899999
Q ss_pred EEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCc-CCCCCCCccccceEE-
Q 011725 200 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNS-TYFVPLKLGSCKRVI- 277 (478)
Q Consensus 200 lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~-~~~~~~~LG~a~~v~- 277 (478)
+|+++++|||.++.+|+.. +++||||. +|++|++||++||++++++..++.- +.+++..+|+|++|.
T Consensus 288 vVLtt~gIddmc~K~~vea------gamAVrR~-----~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvq 356 (545)
T KOG0360|consen 288 VVLTTGGIDDMCLKYFVEA------GAMAVRRC-----KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQ 356 (545)
T ss_pred EEEEcCCccHHHHHHHHHc------chhhhHHH-----HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHH
Confidence 9999999999999988863 48899998 6899999999999999998644422 457789999999984
Q ss_pred --EeCceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Q 011725 278 --ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (478)
Q Consensus 278 --i~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a 355 (478)
+++|.++++.|.+.. .|.|++||+++..+||+||++|||||++|+.
T Consensus 357 eri~dde~ilikg~ka~--------------------------------~aSiILrgaNd~~~DEmers~hdaL~Vlkrt 404 (545)
T KOG0360|consen 357 ERIGDDELILIKGTKAT--------------------------------SASIILRGANDFMLDEMERSLHDALCVLKRT 404 (545)
T ss_pred HhcccceeEEeccCccc--------------------------------eeeEEEecCCcccHhhhccchhhHHHHHHHH
Confidence 789999999886432 4899999999999999999999999999999
Q ss_pred HhcC-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-----------C
Q 011725 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-----------D 421 (478)
Q Consensus 356 ~~~g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~-----------~ 421 (478)
++++ +|||||++|.+++-+|+.|+.. +++||.++..|++||..+|++|+-||+.|+.++ .++++. .
T Consensus 405 Les~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~ 484 (545)
T KOG0360|consen 405 LESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLL 484 (545)
T ss_pred hccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCcccc
Confidence 9998 9999999999999999999987 789999999999999999999999999999999 888762 1
Q ss_pred CCCeeEeCCCCcccccccCCcccchHh-----HHHHHHhhhHhhhcccc--cCCCc
Q 011725 422 SSDLGYNPARGLYVQVWGCRSTETCTI-----RICKGHKYDFIEECNLV--HGGSS 470 (478)
Q Consensus 422 ~~~~Gid~~~g~~~dm~~~gI~Dp~~V-----k~~~~~~~~~~~~~~~~--~~~~~ 470 (478)
..|+|+|..+|++.|.++.|+++|..+ |..+..++++++.+.+. +|..+
T Consensus 485 ~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~ 540 (545)
T KOG0360|consen 485 LKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQ 540 (545)
T ss_pred chhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcccc
Confidence 247899999999999999999999943 45888999999988877 55543
No 39
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-59 Score=466.14 Aligned_cols=402 Identities=13% Similarity=0.140 Sum_probs=343.3
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011725 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~L 84 (478)
+.||+++++.||+||.+ + .+|.+||+|||||||||++||+|+|.++..+++ |+||+.|++.|.+|++.++..+
T Consensus 62 ~ailrei~Vahpaaksm--i----el~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~ 135 (527)
T KOG0364|consen 62 NAILREIDVAHPAAKSM--I----ELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRAL 135 (527)
T ss_pred HHHHHHHhhcCcchhhH--h----hhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999 6 455899999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC-cc-ee------ee--cCCcccceeEEEeeE
Q 011725 85 DCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN-DL-IT------IF--DRKALYNELNFVKGM 146 (478)
Q Consensus 85 ~~~s~~v~--~~~~l~~vA~~s~~------~~~~~~~li~~A~~~vg~~-~~-I~------i~--~g~~~~~~~~l~~G~ 146 (478)
++++.|++ +...+.++...+.. -++.++++..+|+++++.+ |. |. ++ +|+.++ ++.+++|+
T Consensus 136 ~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~-~s~vl~Gv 214 (527)
T KOG0364|consen 136 DKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLE-DSCVLKGV 214 (527)
T ss_pred HhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccc-ccceecce
Confidence 98888775 56667777655553 2567899999999999864 32 32 22 688886 69999999
Q ss_pred EEeecccCCccccccccceeeecCcEEEEeccccCC------------------------HHHHHHHHHHHHhcCCCEEE
Q 011725 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN------------------------SNVIRQASLPCMMQGQSLLV 202 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~------------------------~~~i~~~le~i~~~g~~lvI 202 (478)
.+++...||.| +..++||+|.++|+++.. .+++..+++.|....-.||+
T Consensus 215 ~~nkdv~Hpkm-------rr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVi 287 (527)
T KOG0364|consen 215 MINKDVTHPKM-------RRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVI 287 (527)
T ss_pred eeccccCcHHH-------HHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEE
Confidence 99999999865 347999999999987531 12345566777766666778
Q ss_pred EecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccc-cceEE---E
Q 011725 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI---A 278 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~-a~~v~---i 278 (478)
+.+++++.+.++|..++ +.++|+. ||.|..|+|++||++++++ ++|+...+.|. |+.++ +
T Consensus 288 tekG~sdla~hyl~k~~------iT~~rr~-----rKtDn~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~ 351 (527)
T KOG0364|consen 288 TEKGVSDLAQHYLLKAN------ITAIRRL-----RKTDNNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKI 351 (527)
T ss_pred eccchhHHHHHHHHhcC------chhhhhh-----hccccchhhhhcCceeccC-----hhhCchhccCcccceeeeecc
Confidence 88899999999999765 5578876 8999999999999999997 89999999995 88887 4
Q ss_pred eCceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 011725 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (478)
Q Consensus 279 ~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~ 358 (478)
+++.|+||+.|++|++ |||++||+|..+++|.+|.+.||+.+.|+.+-+
T Consensus 352 gdeyf~f~~~Ck~pka-------------------------------Ctillrg~skdil~e~ernlqda~~varn~ii~ 400 (527)
T KOG0364|consen 352 GDEYFTFFTDCKEPKA-------------------------------CTILLRGPSKDILNEVERNLQDAMGVARNVIIN 400 (527)
T ss_pred CchhhhhhhhcCCCcc-------------------------------eEEEeccCchhHHHHHHHHhhhHHHHHHHhccC
Confidence 7889999999999976 999999999999999999999999999999887
Q ss_pred C-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 011725 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (478)
Q Consensus 359 g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~---~~~~~Gid~~~g 432 (478)
. +||||||+||+.|+.|.+.+.. .|-+|.-+.+++.||+.+||+|++|+|.++... ..+++. +...+|+|..+|
T Consensus 401 PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg 480 (527)
T KOG0364|consen 401 PKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETG 480 (527)
T ss_pred CcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCcee
Confidence 6 9999999999999999987665 899999999999999999999999999999877 667653 446789999999
Q ss_pred cccccccCCcccchHhHHHHH-----HhhhHhhhcccccCC
Q 011725 433 LYVQVWGCRSTETCTIRICKG-----HKYDFIEECNLVHGG 468 (478)
Q Consensus 433 ~~~dm~~~gI~Dp~~Vk~~~~-----~~~~~~~~~~~~~~~ 468 (478)
.++||.+.|+|+|..||.+.. .+.-.|+++++|-+-
T Consensus 481 ~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~ 521 (527)
T KOG0364|consen 481 VIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGK 521 (527)
T ss_pred eEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeee
Confidence 999999999999999887443 334466788887543
No 40
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-57 Score=460.56 Aligned_cols=406 Identities=15% Similarity=0.155 Sum_probs=332.7
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
|.|||++++++||+||+| + ..+++|++++||||+.+|+||++||++|+++|. |++|.+|++||++|.+++++.
T Consensus 68 aatIlrelev~HPaakll--v----~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~ 141 (537)
T KOG0362|consen 68 AATILRELEVEHPAAKLL--V----EATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEI 141 (537)
T ss_pred hHHHHHHhhccCcHHHHH--H----HHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999 4 567999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc-ccCCHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCcc-----eeee--cCCcccceeEEEeeEEEee
Q 011725 84 LDCQAR-KITTFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWENDL-----ITIF--DRKALYNELNFVKGMKLEW 150 (478)
Q Consensus 84 L~~~s~-~v~~~~~l~~vA~~s~~-----~~~~~~~li~~A~~~vg~~~~-----I~i~--~g~~~~~~~~l~~G~~~~~ 150 (478)
|+++.. .+.|.++...++++++. +++++++++++|+-++.+.+. |++- .|++++ +|.++.||+|++
T Consensus 142 l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~-~S~Vv~GmVfkr 220 (537)
T KOG0362|consen 142 LPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLE-DSCVVCGMVFKR 220 (537)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcc-cceeeEEEEecc
Confidence 999863 23333333344444432 378999999999999987642 4443 688886 589999999998
Q ss_pred cccCCccccccccce-eeecCc-EEEEeccc----cCCHHHHH-----------HHHHHHHhcCCCEEEEecCcchhHHH
Q 011725 151 GLKSPYFFTHKNKKE-CVLDGA-LVLIYDTK----ISNSNVIR-----------QASLPCMMQGQSLLVVAEDVENEVLG 213 (478)
Q Consensus 151 g~~~~~~~~~~~~~~-~~l~~p-~Il~~d~~----i~~~~~i~-----------~~le~i~~~g~~lvIi~~~i~~~al~ 213 (478)
.....- +..+..+ ..+.+| -+.-++.| |+++++++ ..++.+..+|.++++..+.+++.+|+
T Consensus 221 ~~eG~v--~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lh 298 (537)
T KOG0362|consen 221 DPEGEV--KSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLH 298 (537)
T ss_pred ccCCcc--cccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhh
Confidence 865431 1111111 133344 23333333 66666544 45677888999999999999999998
Q ss_pred HHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE---EeCceEEEEcCCC
Q 011725 214 DIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSG 290 (478)
Q Consensus 214 ~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~---i~~~~~~~i~g~~ 290 (478)
+.|+ ++|+++|.++ |.+|.|||+..||++.++ +..+.++.+|.|++|. ++++.+++|....
T Consensus 299 --flnk----y~ImVlqi~S-----k~eLrrlcrtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~ 362 (537)
T KOG0362|consen 299 --FLNK----YKIMVLQINS-----KFDLRRLCRTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLVVVFRWES 362 (537)
T ss_pred --hhcc----ccEEEEEecc-----HhhHHHHHHHcCCccchh-----ccCCCCccccccceeeeeecCCceEEEEeecc
Confidence 5555 7899999994 889999999999999997 7888899999999984 6788877765422
Q ss_pred ChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccChhHHHH
Q 011725 291 ELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALL 369 (478)
Q Consensus 291 ~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g-iVpGGGa~el 369 (478)
. .++++||++||+|+..+|+.||.++|+++++|..++++ ++||+|++|+
T Consensus 363 ~------------------------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEi 412 (537)
T KOG0362|consen 363 T------------------------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEI 412 (537)
T ss_pred C------------------------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHH
Confidence 1 13579999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc--CCCCeeEeCCCC-cccccccCCccc
Q 011725 370 YASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ--DSSDLGYNPARG-LYVQVWGCRSTE 444 (478)
Q Consensus 370 ~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~--~~~~~Gid~~~g-~~~dm~~~gI~D 444 (478)
++++.|.+|... +|..|+++..|++||+.+|++||+|||++..++ ++|.+. +..+.|+|+..+ ...|+.++||||
T Consensus 413 eLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D 492 (537)
T KOG0362|consen 413 ELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWD 492 (537)
T ss_pred HHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHH
Confidence 999999999886 999999999999999999999999999999999 888763 345678888776 589999999999
Q ss_pred chHhHHHHHHhhh-----Hhhhcccc
Q 011725 445 TCTIRICKGHKYD-----FIEECNLV 465 (478)
Q Consensus 445 p~~Vk~~~~~~~~-----~~~~~~~~ 465 (478)
-+.+|.|++.+++ +++.+-++
T Consensus 493 ~~~~K~~a~k~at~aa~tvl~vDqii 518 (537)
T KOG0362|consen 493 TLAVKAQAIKLATEAALTVLTVDQII 518 (537)
T ss_pred HHHHHHHHHHHHHhhhheeeehhhee
Confidence 9999999887765 44555555
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-58 Score=459.58 Aligned_cols=394 Identities=18% Similarity=0.232 Sum_probs=335.8
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011725 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~ 83 (478)
++++|++|+++||++-+ ++ -.|..||+..||||||+|+|.++|+++|..+|+ |+||..|..||+.|.+.++++
T Consensus 59 gnvLl~emQiqhPTa~l-----Ia-kaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~ 132 (520)
T KOG0359|consen 59 GNVLLKEMQIQHPTASL-----IA-KVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEF 132 (520)
T ss_pred chhhHHHHhhcCchHHH-----HH-HHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhh
Confidence 57999999999999944 44 478999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhc-cCcce---eee----cCCcccceeEEEeeEEEe
Q 011725 84 LDCQARKITTFEEIAQVGTTAANG------DGEIGELIAKVFEKGW-ENDLI---TIF----DRKALYNELNFVKGMKLE 149 (478)
Q Consensus 84 L~~~s~~v~~~~~l~~vA~~s~~~------~~~~~~li~~A~~~vg-~~~~I---~i~----~g~~~~~~~~l~~G~~~~ 149 (478)
|++.+.++ +.+.|..||.+|.+. -+.+.+++++|+..+. +++.| .++ ...+. .++.+++|.++|
T Consensus 133 L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~-~dT~~v~glvLd 210 (520)
T KOG0359|consen 133 LEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSL-HDTSLVQGLVLD 210 (520)
T ss_pred hhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCch-hhhHHhhhhhcc
Confidence 99777776 578899999999974 2457788899988776 33322 222 22233 468999999999
Q ss_pred ecccCCccccccccceeeecCcEEEEeccccCCH-------------HH-----------HHHHHHHHHhcC---CCEEE
Q 011725 150 WGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQG---QSLLV 202 (478)
Q Consensus 150 ~g~~~~~~~~~~~~~~~~l~~p~Il~~d~~i~~~-------------~~-----------i~~~le~i~~~g---~~lvI 202 (478)
||..||.|++ .++|++||++|.+++.. +| +.+.+.+|.+.+ +.+|+
T Consensus 211 hg~rHpdmp~-------~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvv 283 (520)
T KOG0359|consen 211 HGARHPDMPR-------RVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVV 283 (520)
T ss_pred CCCCCccccc-------chhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEE
Confidence 9999998843 68999999999765421 11 112344555544 34665
Q ss_pred E-ecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEE---E
Q 011725 203 V-AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---A 278 (478)
Q Consensus 203 i-~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~---i 278 (478)
+ +++|||..|..|+.+ +|+|+|+.- |++ ||||..+|||..+++ ++|++|+.||+|+.|. +
T Consensus 284 inqkGidp~sld~~a~~------gIlaLRRAK----RRN-mERL~lacGG~a~ns-----vddLtp~~LG~aglVye~tl 347 (520)
T KOG0359|consen 284 INQKGIDPTSLDSLAKS------GILALRRAK----RRN-MERLVLACGGEAVNS-----VDDLTPDYLGYAGLVYEYTL 347 (520)
T ss_pred ecccCCCCCcchhhhhc------chHHHHHHh----hhh-HHHHHHhhccceecc-----cccCChhhccccceeEEeec
Confidence 5 579999999988754 488999982 554 999999999999996 8999999999999996 6
Q ss_pred eCceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 011725 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (478)
Q Consensus 279 ~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~ 358 (478)
++++|||+++|++|.+ |||+++|+|++.+-+++++++|+++++++++++
T Consensus 348 GEEkfTFIE~~~~p~S-------------------------------~TiLikgpnkht~tQikdairdglrav~ntl~d 396 (520)
T KOG0359|consen 348 GEEKFTFIEKCNNPSS-------------------------------VTILIKGPNKHTITQIKDAIRDGLRAVKNTLED 396 (520)
T ss_pred cceeeEeeecCCCCcc-------------------------------eEEEEeCCccchHHHHHHHHhhHHHHHHHHhhh
Confidence 8999999999999975 899999999999999999999999999999999
Q ss_pred C-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-CCCCeeEeCCCCcc
Q 011725 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-DSSDLGYNPARGLY 434 (478)
Q Consensus 359 g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NAG~d~~~i-~kl~~~-~~~~~Gid~~~g~~ 434 (478)
+ ++||+|+.|.+++.+|+..... +++.++|+++|++||..+|++|+.|+|+|.-+. .+|..+ ....+|+|..+|+.
T Consensus 397 ~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~ 476 (520)
T KOG0359|consen 397 KCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEE 476 (520)
T ss_pred cccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCc
Confidence 8 9999999999999999987775 999999999999999999999999999999877 777553 12246999999999
Q ss_pred cccccCCcccchHhHHHHHHhhhHhh
Q 011725 435 VQVWGCRSTETCTIRICKGHKYDFIE 460 (478)
Q Consensus 435 ~dm~~~gI~Dp~~Vk~~~~~~~~~~~ 460 (478)
.|....||||.+.||+++++..+.++
T Consensus 477 ~~~~~~gi~Dny~v~~~~l~s~~via 502 (520)
T KOG0359|consen 477 CDPSRKGIYDNYSVKKQLLRSEAVIA 502 (520)
T ss_pred cchhhccccchHHHHHHHhhhhHHHH
Confidence 99999999999999999999888887
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-54 Score=417.31 Aligned_cols=309 Identities=17% Similarity=0.152 Sum_probs=281.0
Q ss_pred cCcccccccchhhhhhhhhhhcccccCCcchhHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHhccccccCC
Q 011725 15 INTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT 93 (478)
Q Consensus 15 ~~p~~~~l~~~~~s~~~a~~Qd~evGDGTTTvvvLa~~Ll~~~~~li~-gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~~ 93 (478)
.|+++|++ + .+|..||.++|||||.+++||+++++++.+++. |+||..|..||+.|.+.++++|.+.+.+++
T Consensus 71 d~~IakLm--v----~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e- 143 (400)
T KOG0357|consen 71 VHQIAKLI--V----ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE- 143 (400)
T ss_pred chHHHHHH--H----HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-
Confidence 57888888 4 566899999999999999999999999999999 999999999999999999999999887765
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCcccceeEEEeeEEEeecccCCccccccccceeeecCcEE
Q 011725 94 FEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALV 173 (478)
Q Consensus 94 ~~~l~~vA~~s~~~~~~~~~li~~A~~~vg~~~~I~i~~g~~~~~~~~l~~G~~~~~g~~~~~~~~~~~~~~~~l~~p~I 173 (478)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCeE
Q 011725 174 LIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQV 253 (478)
Q Consensus 174 l~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~i 253 (478)
|.++++.++++|.+|+||+|+|||+|.+.|..|.+. |||++| .. ++|-||++|||++
T Consensus 144 ------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lp------avrwVG----Gp-EiEliAiaT~grI 200 (400)
T KOG0357|consen 144 ------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLP------AVRWVG----GP-EIELIAIATGGRI 200 (400)
T ss_pred ------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCC------ceeecC----Cc-ceEEEEeecCCee
Confidence 556788999999999999999999999999988854 899997 23 4999999999999
Q ss_pred eeCCCCCCcCCCCCCCccccceEE-E----eCceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEE
Q 011725 254 LTGGSGMNSTYFVPLKLGSCKRVI-A----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVL 328 (478)
Q Consensus 254 i~~~~~~~~~~~~~~~LG~a~~v~-i----~~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRla~l~g~~atI 328 (478)
+.+ |+++++++||+|+.|. + ++|++.+++.|++.++ .||
T Consensus 201 Vpr-----F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nska-------------------------------VTi 244 (400)
T KOG0357|consen 201 VPR-----FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKA-------------------------------VTI 244 (400)
T ss_pred ecc-----HhhhCHhhccccceEEEEecccccceEEEEEecCCCce-------------------------------EEE
Confidence 997 9999999999999995 3 4889999999998876 699
Q ss_pred EeccCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHh
Q 011725 329 KVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASN 406 (478)
Q Consensus 329 ~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g-iVpGGGa~el~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~N 406 (478)
.|||++..+++|.+|++|||||++|+.+++. +|+|||++|+.||-.+.+.++. +|.|||++++|++||+.||..||+|
T Consensus 245 fvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaen 324 (400)
T KOG0357|consen 245 FVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAEN 324 (400)
T ss_pred EEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhc
Confidence 9999999999999999999999999999996 9999999999999999998876 9999999999999999999999999
Q ss_pred cCCChHHH-HHHHhc----CCCCeeEeCCCCcccccccCCcccchHhHHHHHHhhh-----HhhhcccccCCC
Q 011725 407 AGVDGSVI-DKLLEQ----DSSDLGYNPARGLYVQVWGCRSTETCTIRICKGHKYD-----FIEECNLVHGGS 469 (478)
Q Consensus 407 AG~d~~~i-~kl~~~----~~~~~Gid~~~g~~~dm~~~gI~Dp~~Vk~~~~~~~~-----~~~~~~~~~~~~ 469 (478)
+|++|.+. +.+++. .++++|+|+.-..-.||.+.+|+||+.-|++.+.+++ +|+++|++-++.
T Consensus 325 sgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 325 SGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred cCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 99999988 777662 5688999999888999999999999999998887765 677888886654
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.96 E-value=1.4e-28 Score=235.26 Aligned_cols=192 Identities=26% Similarity=0.342 Sum_probs=165.5
Q ss_pred HHHHHHHHHhcC-----CChhHHHHHHHHHHhhcc------Ccceeee--cCCcccceeEEEeeEEEeecccCCcccccc
Q 011725 95 EEIAQVGTTAAN-----GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHK 161 (478)
Q Consensus 95 ~~l~~vA~~s~~-----~~~~~~~li~~A~~~vg~------~~~I~i~--~g~~~~~~~~l~~G~~~~~g~~~~~~~~~~ 161 (478)
+.|.++|++|.+ .++.+++++++|+..+++ .+.|.++ +|+++. ++++++|++|+++|.+|+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~-ds~li~Gv~~~~~~~~~~m~--- 77 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLE-DSELVVGVVFDKGYASPYMP--- 77 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChh-hceeEeeEEEeccccCCCCC---
Confidence 468899999988 578899999999999987 3456665 677774 69999999999999999882
Q ss_pred ccceeeecCcEEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhH
Q 011725 162 NKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 241 (478)
Q Consensus 162 ~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~ 241 (478)
..++||+|++++++++. +|+++++|++.++++|.. .+|+++++. ++.+
T Consensus 78 ----~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~------~~I~~v~~~-----~~~~ 125 (209)
T cd03333 78 ----KRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAK------AGIMAVRRV-----KKED 125 (209)
T ss_pred ----eEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHH------CCCEEEEeC-----CHHH
Confidence 37999999999999876 777777899999998886 358999987 5777
Q ss_pred HHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEe---CceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHH
Q 011725 242 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRL 318 (478)
Q Consensus 242 le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~---~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~~l~eRl 318 (478)
|+|||++|||+++++ ++++++++||+|++|++. +++++++.+++.+
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 999999999999996 788889999999999864 4568888887654
Q ss_pred hhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 011725 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (478)
Q Consensus 319 a~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~ 358 (478)
+.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 175 -----~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 -----KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -----CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 46999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.95 E-value=2.1e-26 Score=227.45 Aligned_cols=198 Identities=11% Similarity=0.157 Sum_probs=164.2
Q ss_pred ChhHHHHHHHHHHhhccC---c-------ceeee--cCCcccceeEEEeeEEEeecccCCccccccccceeeecCcEEEE
Q 011725 108 DGEIGELIAKVFEKGWEN---D-------LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLI 175 (478)
Q Consensus 108 ~~~~~~li~~A~~~vg~~---~-------~I~i~--~g~~~~~~~~l~~G~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~ 175 (478)
.+.|++++++|+..+.++ + .|+|. +|+++. ++++++|++|++++.++.|+ ..++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~-dS~li~Gvvi~k~~~~~~m~-------~~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPS-DSEVVDGVVFTKNVAHKRMP-------SKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHH-HcEEEeeEEEeCCCCCccCC-------cccCCCcEEE
Confidence 468999999999988532 1 25554 688885 79999999999998888663 3689999999
Q ss_pred eccccCCH-----------------HHHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhh
Q 011725 176 YDTKISNS-----------------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDR 238 (478)
Q Consensus 176 ~d~~i~~~-----------------~~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r 238 (478)
++++++.. +.+..+++++.+.|.++|++.++|++.++++|..+ +|++++++ +
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~~v-----~ 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVLNV-----K 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEEec-----C
Confidence 99876432 12445788899999999999999999999988864 48899998 4
Q ss_pred hhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEE---eC-----ceEEEEcCCCChhhHHHHHHHHHHHhhhcc
Q 011725 239 KAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TM-----DNVVIIGGSGELVDIQERCEQLRSTIKLST 310 (478)
Q Consensus 239 k~~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i---~~-----~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~ 310 (478)
+++|+|||++|||+++++. .+++++++||+|+.|++ ++ ++++||+||+.+.
T Consensus 161 ~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~----------------- 219 (261)
T cd03334 161 PSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKEL----------------- 219 (261)
T ss_pred HHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCc-----------------
Confidence 6779999999999999961 24688889999999975 43 5899999987653
Q ss_pred cHHHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011725 311 SDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (478)
Q Consensus 311 s~~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g 359 (478)
.|||+|||+|++.++|.||+++||+++++++..++
T Consensus 220 --------------~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 220 --------------GCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred --------------eeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 58999999999999999999999999999997764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.82 E-value=3.4e-08 Score=113.10 Aligned_cols=204 Identities=12% Similarity=0.175 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHhhccC----------cceeee--cCCcccceeEEEeeEEEeecccCCccccccccceeeecCcEEEEec
Q 011725 110 EIGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYD 177 (478)
Q Consensus 110 ~~~~li~~A~~~vg~~----------~~I~i~--~g~~~~~~~~l~~G~~~~~g~~~~~~~~~~~~~~~~l~~p~Il~~d 177 (478)
.+..++.+|...+.++ +.+.++ .|++. .+++++.|+++.+...+-.| ..++++|+|++..
T Consensus 336 ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~-~dS~vi~Gvv~sKn~~~k~M-------~~~~e~prilll~ 407 (1598)
T KOG0230|consen 336 IITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSR-VDSEVIKGVVCSKNVAHKRM-------ATKYENPRILLLG 407 (1598)
T ss_pred HHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCc-ccceeeeEEEeecchhhhhh-------hhhccCCceEEEe
Confidence 4666777777766543 124444 56664 57999999999998776655 4478999999987
Q ss_pred cccC---------CHH--------HHHHHHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhh
Q 011725 178 TKIS---------NSN--------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKA 240 (478)
Q Consensus 178 ~~i~---------~~~--------~i~~~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~ 240 (478)
+.+. +.+ .+...+..|....-+++++.+++++.|..+|.. +++.-++-+| ..
T Consensus 408 g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~---k~I~lvlnvK--------~s 476 (1598)
T KOG0230|consen 408 GPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLD---KGISLVLNVK--------RS 476 (1598)
T ss_pred cchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhc---cCeEEEEecc--------HH
Confidence 6432 222 233445556555667888999999999987763 3322233344 44
Q ss_pred HHHHHHHHhCCeEeeCCCCCCcCCCCCCCccccceEEEe--------CceEEEEcCCCChhhHHHHHHHHHHHhhhcccH
Q 011725 241 IMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT--------MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD 312 (478)
Q Consensus 241 ~le~la~~tGa~ii~~~~~~~~~~~~~~~LG~a~~v~i~--------~~~~~~i~g~~~~~~i~~r~~~l~~~l~~~~s~ 312 (478)
.|+||+++|||.|+.+ ++.++...||+|+.+++. ...+.|++||..+..
T Consensus 477 ~leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG------------------ 533 (1598)
T KOG0230|consen 477 LLERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLG------------------ 533 (1598)
T ss_pred HHHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCC------------------
Confidence 6999999999999986 677888899999998753 223578899987743
Q ss_pred HHHHHHhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHH-HHHhcCcccChhHHH
Q 011725 313 KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ-AAKEEGIVPGSGVAL 368 (478)
Q Consensus 313 ~l~eRla~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k-~a~~~giVpGGGa~e 368 (478)
|||++||++..++.+.++-+.=++-++= .+++.-|+.-=|+..
T Consensus 534 -------------~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 534 -------------CTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASI 577 (1598)
T ss_pred -------------ceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence 8999999999999999988877666554 345555665555543
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00012 Score=79.30 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCC-EEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHH-HHHHHHhCCeEeeCCCCCCcC
Q 011725 186 IRQASLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM-EDLAILTGGQVLTGGSGMNST 263 (478)
Q Consensus 186 i~~~le~i~~~g~~-lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~l-e~la~~tGa~ii~~~~~~~~~ 263 (478)
+..+++.+.+.|.+ +++++++|+|.+.++|..+ .|++++++ .++++ ++|+.+|||++++. ++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~~v-----~~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGRRV-----KKEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceeccee-----cchhhHHHHHHccCceEEee-----cc
Confidence 33456677889999 8888999999999988864 48899988 46678 79999999999996 79
Q ss_pred CCCCCCccc--cceEEE---eCceEEEEcCCCC
Q 011725 264 YFVPLKLGS--CKRVIA---TMDNVVIIGGSGE 291 (478)
Q Consensus 264 ~~~~~~LG~--a~~v~i---~~~~~~~i~g~~~ 291 (478)
+.++..+|. |+.|+. ++++++++.++.+
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~ 355 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERKA 355 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhhh
Confidence 999999999 999974 4667777777654
No 47
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=46.53 E-value=44 Score=36.69 Aligned_cols=46 Identities=13% Similarity=-0.003 Sum_probs=31.3
Q ss_pred HHHHHHhhccCcceeeecCCcccc-eeEEEeeEEEeecccCCccccc
Q 011725 115 IAKVFEKGWENDLITIFDRKALYN-ELNFVKGMKLEWGLKSPYFFTH 160 (478)
Q Consensus 115 i~~A~~~vg~~~~I~i~~g~~~~~-~~~l~~G~~~~~g~~~~~~~~~ 160 (478)
..+++..++.++.+.++++....+ ...-+.|..++.+|+.|+|+.+
T Consensus 177 ~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~ 223 (533)
T PTZ00212 177 EKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILE 223 (533)
T ss_pred hHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEe
Confidence 345666666677667766554432 3455569999999999998654
No 48
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=42.72 E-value=61 Score=26.52 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCe
Q 011725 189 ASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (478)
Q Consensus 189 ~le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ 252 (478)
-++.+.+....+|++++|+++.....+..--.+ .+|-.+-.++ +++|-++||-.
T Consensus 21 t~Kai~kg~~~~v~iA~Da~~~vv~~l~~lcee--k~Ip~v~V~s--------~~~LGkAcgi~ 74 (84)
T PRK13600 21 TLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQ--KNIPVSFFKS--------KHALGKHVGIN 74 (84)
T ss_pred HHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEECC--------HHHHHHHhCCC
Confidence 455555556789999999999877655421111 2333444442 67788888753
No 49
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=38.95 E-value=66 Score=35.20 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=31.7
Q ss_pred HHHHHhhccCcceeeecCCcccceeEEE--eeEEEeecccCCccccc
Q 011725 116 AKVFEKGWENDLITIFDRKALYNELNFV--KGMKLEWGLKSPYFFTH 160 (478)
Q Consensus 116 ~~A~~~vg~~~~I~i~~g~~~~~~~~l~--~G~~~~~g~~~~~~~~~ 160 (478)
.+++..++.++.+.++.+... +.+++. .|..++.+|+.|+|+.+
T Consensus 167 ~~~~s~l~~~av~~i~~~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~ 212 (519)
T TIGR02341 167 KDHFAQLAVDAVLRLKGSGNL-DAIQIIKKLGGSLNDSYLDEGFLLE 212 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCh-hheEEEEccCCCcccceEEeeEEEe
Confidence 456666666776677665555 457777 49999999999998654
No 50
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=35.98 E-value=14 Score=40.38 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=49.2
Q ss_pred cCCCEEEEecCcch-----hHHHHHHHhccCCC----CcEEEEeccCcchhhhhHHHHHHHHhCCeEeeC
Q 011725 196 QGQSLLVVAEDVEN-----EVLGDIATDFTCTT----EKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 256 (478)
Q Consensus 196 ~g~~lvIi~~~i~~-----~al~~l~~n~~~~~----~~i~avk~~~~g~~rk~~le~la~~tGa~ii~~ 256 (478)
...|+.|..+++++ +++..++.|+.++. .++++++.+ +++.+...|++....++.++...
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 34578888999988 88888888887653 489999988 99999999999999888876653
No 51
>smart00574 POX domain associated with HOX domains.
Probab=32.76 E-value=63 Score=29.02 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CcccChhHHHHHHHHHHHh
Q 011725 336 AEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (478)
Q Consensus 336 ~~l~E~er~l~DAl~~~k~a~~~-giVpGGGa~el~~s~~L~~ 377 (478)
..++|++++++--..-++..+.. ..|+|+|++-.+.+-+|+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a 126 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKT 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 36788888888777777777666 3789999988888777753
No 52
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=31.14 E-value=25 Score=37.76 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhcCcccChhHHHHHHHHHHHhhc
Q 011725 342 KLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQ 379 (478)
Q Consensus 342 er~l~DAl~~~k~a~~~giVpGGGa~el~~s~~L~~~~ 379 (478)
+|.+.||+..+|++.+.=+|.|||+-+-.+...|..|+
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~ 253 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFA 253 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHH
Confidence 35678899999999777799999999888888887765
No 53
>PRK06683 hypothetical protein; Provisional
Probab=30.38 E-value=1.3e+02 Score=24.42 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=32.6
Q ss_pred HHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCe
Q 011725 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (478)
Q Consensus 190 le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ 252 (478)
++.+.+....+||+++|.++.....+..- ....+|-.+..+ ..++|..+||-.
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~--~~~~~Vpv~~~~--------t~~eLG~A~G~~ 72 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRT--ALQHNIPITKVE--------SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHH--HHhcCCCEEEEC--------CHHHHHHHhCCc
Confidence 45555555789999999999876654311 111234344443 257888888854
No 54
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=27.00 E-value=1.9e+02 Score=23.38 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCCEEEEec-CcchhHHHHHHHhccCCCCcEEEEeccC-cchhhhhHHHHHHHHhCCeEeeC
Q 011725 188 QASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAAG-LAEDRKAIMEDLAILTGGQVLTG 256 (478)
Q Consensus 188 ~~le~i~~~g~~lvIi~~-~i~~~al~~l~~n~~~~~~~i~avk~~~-~g~~rk~~le~la~~tGa~ii~~ 256 (478)
.+|......-.|++.+.+ ++++.++..+-..-.. ..++=||..+ ..+.+++..+.|+..|||.++..
T Consensus 7 ~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~--~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 7 KFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEK--HELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHH--HSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHh--CCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 345555445568888876 7888877754422111 1355566554 23335677888999999998873
No 55
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=26.53 E-value=75 Score=28.55 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-cccChhHHHHHHHHHHHh
Q 011725 337 EVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDK 377 (478)
Q Consensus 337 ~l~E~er~l~DAl~~~k~a~~~g-iVpGGGa~el~~s~~L~~ 377 (478)
.|+|++|+++--..=++..+..- -|.|.|++-.+.+-+|+.
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqa 126 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQA 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 67788888777766666666553 689999998888877754
No 56
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.70 E-value=1.7e+02 Score=23.56 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=30.5
Q ss_pred HHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCe
Q 011725 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (478)
Q Consensus 190 le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ 252 (478)
++.+.+....+||+++|.++.....+. +. ....+|-.+..+ ..++|..++|-.
T Consensus 20 ~kai~~gkaklViiA~D~~~~~~~~i~-~~-c~~~~Vp~~~~~--------s~~eLG~a~G~~ 72 (82)
T PRK13602 20 VKALKRGSVKEVVVAEDADPRLTEKVE-AL-ANEKGVPVSKVD--------SMKKLGKACGIE 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHH-HH-HHHcCCCEEEEC--------CHHHHHHHHCCC
Confidence 444545556899999999997544332 11 011233344443 247788888853
No 57
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=24.59 E-value=1.8e+02 Score=23.61 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=31.3
Q ss_pred HHHHHhcCCCEEEEecCcchhHHHHHHHhccCCCCcEEEEeccCcchhhhhHHHHHHHHhCCe
Q 011725 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (478)
Q Consensus 190 le~i~~~g~~lvIi~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~rk~~le~la~~tGa~ 252 (478)
++.+.+....|||++.|.++.....+..- ....+|-.+... ..++|..+||-.
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~--c~~~~Vpv~~~~--------t~~eLG~A~G~~ 69 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKEL--CEEKSIKIVYID--------TMKELGVMCGID 69 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHH--HHhCCCCEEEeC--------CHHHHHHHHCCc
Confidence 45555555789999999998776654421 111223233322 257888888853
No 58
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=21.82 E-value=1.4e+02 Score=29.83 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=29.4
Q ss_pred HhhhcCCeEEEEeccCcHHHHHH-HHHHHHHHHHHHHHHHhcC-cccChhHH
Q 011725 318 LAKLSGGYAVLKVCGHGKAEVRE-KKLKITNALHAVQAAKEEG-IVPGSGVA 367 (478)
Q Consensus 318 la~l~g~~atI~vrG~t~~~l~E-~er~l~DAl~~~k~a~~~g-iVpGGGa~ 367 (478)
|.+++|++..|+++|+.- -++ ....+-+-+...+..=..- +|.|||..
T Consensus 18 i~~~~~~~~VIk~gG~~~--~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~ 67 (284)
T CHL00202 18 IQKFRGRIMVIKYGGAAM--KNLILKADIIKDILFLSCIGLKIVVVHGGGPE 67 (284)
T ss_pred HHHHcCCeEEEEEChHHh--cCcchHHHHHHHHHHHHHCCCcEEEEeCCcHH
Confidence 567889999999999652 122 2334555555544321122 69999984
No 59
>PLN02512 acetylglutamate kinase
Probab=21.81 E-value=1.9e+02 Score=29.37 Aligned_cols=56 Identities=21% Similarity=0.263 Sum_probs=31.7
Q ss_pred HhhhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHhcC--cccChhHHHHHHHHHHHhh
Q 011725 318 LAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG--IVPGSGVALLYASKELDKL 378 (478)
Q Consensus 318 la~l~g~~atI~vrG~t~~~l~E~er~l~DAl~~~k~a~~~g--iVpGGGa~el~~s~~L~~~ 378 (478)
|.+++|++..|++||+.-.. ++...++.+.+..++. .... +|.|||. .....++++
T Consensus 42 i~~~~~~tiVIKlGGs~i~d-~~~~~~~~~di~~l~~-~g~~iVlVHGgG~---~i~~~~~~~ 99 (309)
T PLN02512 42 IQRFRGKTVVVKYGGAAMKD-PELKAGVIRDLVLLSC-VGLRPVLVHGGGP---EINSWLKKV 99 (309)
T ss_pred HHHHCCCeEEEEECCeeccC-hhHHHHHHHHHHHHHH-CCCCEEEEECCcH---HHHHHHHHc
Confidence 45778999999999976322 1223334444433332 1112 6999998 333445444
No 60
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.81 E-value=1.1e+02 Score=28.25 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=30.5
Q ss_pred eecCcEEEEeccccCC-----HHHHHHHHHHHHhcCCCEEEEecCcc
Q 011725 167 VLDGALVLIYDTKISN-----SNVIRQASLPCMMQGQSLLVVAEDVE 208 (478)
Q Consensus 167 ~l~~p~Il~~d~~i~~-----~~~i~~~le~i~~~g~~lvIi~~~i~ 208 (478)
-+.+|.++++|-+... .+.+.+++....+.|+.++++..+.+
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 142 VAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 4578999999987543 34567777777767888888877654
Done!