Query 011726
Match_columns 478
No_of_seqs 369 out of 1600
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 14:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.8 7.3E-21 2.5E-25 139.6 1.6 56 271-330 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.7 6E-17 2.1E-21 131.5 6.4 87 115-204 4-93 (94)
3 2ct7_A Ring finger protein 31; 99.3 4.8E-14 1.7E-18 111.9 -3.0 77 186-266 4-84 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.1 1.5E-12 5.2E-17 101.6 -5.8 65 186-254 5-75 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.0 1.5E-11 5.1E-16 105.7 -2.5 115 115-289 6-126 (133)
6 3hcs_A TNF receptor-associated 98.7 1.7E-08 5.7E-13 90.6 6.4 83 114-224 16-98 (170)
7 2ecv_A Tripartite motif-contai 98.5 1.6E-07 5.4E-12 73.6 6.6 55 114-174 17-71 (85)
8 2ysj_A Tripartite motif-contai 98.4 2.5E-07 8.5E-12 68.4 5.8 45 114-165 18-62 (63)
9 2ct2_A Tripartite motif protei 98.4 9.1E-08 3.1E-12 75.7 3.0 60 114-180 13-74 (88)
10 2ysl_A Tripartite motif-contai 98.4 2.5E-07 8.6E-12 70.4 4.8 52 114-174 18-69 (73)
11 2ecy_A TNF receptor-associated 98.4 1.7E-07 5.7E-12 70.1 3.6 51 114-175 13-63 (66)
12 1e4u_A Transcriptional repress 98.4 1.8E-07 6.2E-12 72.3 3.9 53 114-175 9-63 (78)
13 2ecw_A Tripartite motif-contai 98.4 3.7E-07 1.3E-11 71.5 5.8 56 114-175 17-72 (85)
14 2egp_A Tripartite motif-contai 98.4 2.7E-08 9.1E-13 77.2 -0.9 57 114-175 10-66 (79)
15 3hct_A TNF receptor-associated 98.4 3.8E-07 1.3E-11 76.5 6.1 84 113-224 15-98 (118)
16 2yu4_A E3 SUMO-protein ligase 98.3 3.2E-07 1.1E-11 73.8 4.6 56 115-174 6-63 (94)
17 2d8t_A Dactylidin, ring finger 98.3 2.1E-07 7.3E-12 70.5 3.3 54 113-178 12-65 (71)
18 3ztg_A E3 ubiquitin-protein li 98.3 2.8E-07 9.5E-12 73.6 3.7 49 114-172 11-60 (92)
19 2ecm_A Ring finger and CHY zin 98.3 4E-07 1.4E-11 65.2 4.0 48 115-172 4-53 (55)
20 1rmd_A RAG1; V(D)J recombinati 98.3 3.3E-07 1.1E-11 76.6 4.0 83 115-224 22-104 (116)
21 2csy_A Zinc finger protein 183 98.3 9.2E-07 3.2E-11 68.8 5.8 48 114-173 13-60 (81)
22 2yur_A Retinoblastoma-binding 98.3 1E-06 3.5E-11 67.3 5.8 48 114-171 13-61 (74)
23 2djb_A Polycomb group ring fin 98.3 1.2E-06 4.1E-11 66.5 5.8 50 114-175 13-63 (72)
24 3lrq_A E3 ubiquitin-protein li 98.3 3.8E-07 1.3E-11 74.2 3.1 51 115-176 21-72 (100)
25 1t1h_A Gspef-atpub14, armadill 98.2 5.6E-07 1.9E-11 69.5 3.5 49 115-174 7-55 (78)
26 1jm7_A BRCA1, breast cancer ty 98.2 5.3E-07 1.8E-11 74.7 3.5 53 115-176 20-72 (112)
27 3fl2_A E3 ubiquitin-protein li 98.2 6.4E-07 2.2E-11 75.8 3.8 49 115-174 51-99 (124)
28 3l11_A E3 ubiquitin-protein li 98.2 3.4E-07 1.2E-11 76.4 1.9 51 113-174 12-62 (115)
29 3knv_A TNF receptor-associated 98.2 4.3E-07 1.5E-11 78.7 2.6 48 114-172 29-76 (141)
30 2ea6_A Ring finger protein 4; 98.2 9.9E-07 3.4E-11 66.1 4.3 50 114-173 13-67 (69)
31 2ecj_A Tripartite motif-contai 98.2 9.9E-07 3.4E-11 63.7 4.0 45 114-165 13-57 (58)
32 1g25_A CDK-activating kinase a 98.2 8.4E-07 2.9E-11 65.9 3.7 51 116-175 3-56 (65)
33 2kiz_A E3 ubiquitin-protein li 98.2 2.1E-06 7.2E-11 64.5 5.8 49 115-173 13-62 (69)
34 3ng2_A RNF4, snurf, ring finge 98.2 8.7E-07 3E-11 66.9 3.3 52 114-175 8-64 (71)
35 2kr4_A Ubiquitin conjugation f 98.2 1.7E-06 5.7E-11 68.1 4.8 50 114-175 12-61 (85)
36 4ayc_A E3 ubiquitin-protein li 98.2 6.8E-07 2.3E-11 77.2 2.6 46 116-173 53-98 (138)
37 2xeu_A Ring finger protein 4; 98.1 1.1E-06 3.7E-11 64.9 3.3 51 115-175 2-57 (64)
38 2y43_A E3 ubiquitin-protein li 98.1 7.7E-07 2.6E-11 72.1 2.3 49 115-175 21-70 (99)
39 1z6u_A NP95-like ring finger p 98.1 1.8E-06 6.3E-11 75.5 3.6 50 115-175 77-126 (150)
40 1chc_A Equine herpes virus-1 r 98.0 3.1E-06 1E-10 63.3 3.9 48 115-173 4-51 (68)
41 2ckl_A Polycomb group ring fin 98.0 1.9E-06 6.5E-11 71.0 2.9 47 115-173 14-61 (108)
42 1bor_A Transcription factor PM 98.0 1.1E-06 3.9E-11 63.2 1.4 44 115-173 5-48 (56)
43 1iym_A EL5; ring-H2 finger, ub 98.0 2.4E-06 8.3E-11 61.0 2.7 48 115-172 4-53 (55)
44 2ect_A Ring finger protein 126 98.0 4.3E-06 1.5E-10 64.4 4.2 51 114-174 13-64 (78)
45 3htk_C E3 SUMO-protein ligase 98.0 2.8E-06 9.5E-11 79.9 3.7 54 114-175 179-233 (267)
46 2ep4_A Ring finger protein 24; 98.0 8.4E-06 2.9E-10 62.0 5.4 49 115-173 14-63 (74)
47 1x4j_A Ring finger protein 38; 98.0 5.4E-06 1.8E-10 63.4 4.3 50 114-173 21-71 (75)
48 2l0b_A E3 ubiquitin-protein li 97.9 6.8E-06 2.3E-10 65.4 4.0 50 114-173 38-88 (91)
49 2kre_A Ubiquitin conjugation f 97.9 4.4E-06 1.5E-10 67.8 2.8 49 114-174 27-75 (100)
50 1jm7_B BARD1, BRCA1-associated 97.9 2.2E-06 7.6E-11 71.7 0.9 45 115-173 21-66 (117)
51 1v87_A Deltex protein 2; ring- 97.9 8E-06 2.7E-10 67.8 4.2 53 116-173 25-93 (114)
52 1wgm_A Ubiquitin conjugation f 97.9 6.1E-06 2.1E-10 66.7 3.3 50 114-175 20-70 (98)
53 2ckl_B Ubiquitin ligase protei 97.8 7.3E-06 2.5E-10 72.9 3.4 48 115-173 53-101 (165)
54 2ecn_A Ring finger protein 141 97.8 3E-06 1E-10 63.8 0.1 45 115-172 14-58 (70)
55 2c2l_A CHIP, carboxy terminus 97.8 1.3E-05 4.4E-10 77.2 4.5 51 114-175 206-256 (281)
56 2f42_A STIP1 homology and U-bo 97.7 2.3E-05 7.9E-10 70.1 4.1 50 115-175 105-154 (179)
57 4ic3_A E3 ubiquitin-protein li 97.7 1.1E-05 3.8E-10 61.5 1.6 43 115-173 23-66 (74)
58 2ecg_A Baculoviral IAP repeat- 97.6 2.4E-05 8.4E-10 59.7 2.4 43 115-173 24-67 (75)
59 2ct7_A Ring finger protein 31; 97.6 2.4E-05 8.1E-10 61.5 1.9 49 276-329 25-74 (86)
60 2ecl_A Ring-box protein 2; RNF 97.5 4.9E-05 1.7E-09 59.0 2.7 48 116-173 15-75 (81)
61 2d8s_A Cellular modulator of i 97.4 0.0002 6.8E-09 55.3 5.5 51 115-173 14-69 (80)
62 2vje_A E3 ubiquitin-protein li 97.4 9E-05 3.1E-09 54.7 2.9 48 114-173 6-56 (64)
63 2y1n_A E3 ubiquitin-protein li 97.3 0.00012 4.2E-09 73.1 4.4 47 117-174 333-379 (389)
64 2ea5_A Cell growth regulator w 97.3 0.00024 8.1E-09 53.1 4.5 44 114-173 13-57 (68)
65 2yho_A E3 ubiquitin-protein li 97.3 6E-05 2E-09 58.2 1.0 43 116-174 18-61 (79)
66 2vje_B MDM4 protein; proto-onc 97.2 0.00015 5.1E-09 53.3 2.8 47 115-173 6-55 (63)
67 4ap4_A E3 ubiquitin ligase RNF 97.2 0.0001 3.4E-09 62.4 2.1 54 113-176 69-127 (133)
68 2jmo_A Parkin; IBR, E3 ligase, 97.2 0.00016 5.5E-09 55.9 2.8 37 276-312 25-69 (80)
69 3dpl_R Ring-box protein 1; ubi 97.1 0.00028 9.6E-09 57.6 3.6 48 115-172 36-99 (106)
70 3t6p_A Baculoviral IAP repeat- 96.6 0.00049 1.7E-08 68.2 1.5 43 115-173 294-337 (345)
71 3k1l_B Fancl; UBC, ring, RWD, 96.6 0.0015 5.1E-08 63.6 4.4 60 114-175 306-374 (381)
72 4a0k_B E3 ubiquitin-protein li 96.5 0.00045 1.5E-08 57.3 0.0 48 116-173 48-111 (117)
73 2bay_A PRE-mRNA splicing facto 95.7 0.0048 1.7E-07 44.8 2.5 47 116-174 3-50 (61)
74 2ct0_A Non-SMC element 1 homol 95.5 0.0068 2.3E-07 45.8 2.7 50 115-173 14-63 (74)
75 1v92_A NSFL1 cofactor P47; 3-h 94.9 0.075 2.6E-06 35.8 6.1 40 51-90 5-44 (46)
76 3vk6_A E3 ubiquitin-protein li 93.9 0.039 1.3E-06 43.6 3.4 44 118-172 3-47 (101)
77 2cs3_A Protein C14ORF4, MY039 93.7 0.24 8E-06 37.2 7.0 67 113-182 12-88 (93)
78 2dal_A Protein KIAA0794; FAS a 93.4 0.21 7E-06 36.1 6.2 41 50-90 14-54 (62)
79 2jun_A Midline-1; B-BOX, TRIM, 92.7 0.047 1.6E-06 43.6 2.2 32 116-148 3-36 (101)
80 1vyx_A ORF K3, K3RING; zinc-bi 92.6 0.16 5.5E-06 36.4 4.7 49 115-173 5-58 (60)
81 1wd2_A Ariadne-1 protein homol 92.3 0.048 1.6E-06 39.3 1.6 37 206-246 5-44 (60)
82 1wj7_A Hypothetical protein (R 92.1 0.3 1E-05 38.9 6.0 48 43-90 21-78 (104)
83 2dam_A ETEA protein; KIAA0887, 91.1 0.52 1.8E-05 34.6 6.1 40 51-90 18-58 (67)
84 2di0_A Activating signal coint 90.9 0.67 2.3E-05 34.2 6.4 41 50-90 12-53 (71)
85 2jun_A Midline-1; B-BOX, TRIM, 89.5 0.042 1.4E-06 43.9 -1.2 74 228-315 17-94 (101)
86 1z96_A DNA-damage, UBA-domain 89.3 0.68 2.3E-05 29.8 4.9 35 52-87 5-39 (40)
87 1g25_A CDK-activating kinase a 89.0 0.14 4.7E-06 37.1 1.4 32 233-289 25-56 (65)
88 3vk6_A E3 ubiquitin-protein li 88.2 0.24 8.1E-06 39.2 2.3 46 209-288 3-49 (101)
89 2dzl_A Protein FAM100B; UBA-li 87.2 1.2 4.2E-05 32.5 5.6 37 53-89 19-55 (66)
90 3e21_A HFAF1, FAS-associated f 86.5 0.57 2E-05 31.4 3.1 38 51-88 5-43 (45)
91 4ayc_A E3 ubiquitin-protein li 85.8 0.2 6.9E-06 42.4 0.8 27 209-244 55-81 (138)
92 2ecy_A TNF receptor-associated 85.1 0.28 9.6E-06 35.5 1.2 49 207-289 15-63 (66)
93 1t1h_A Gspef-atpub14, armadill 84.9 0.31 1.1E-05 36.5 1.4 46 208-287 9-54 (78)
94 2ckl_B Ubiquitin ligase protei 84.4 0.37 1.3E-05 41.9 1.9 45 209-287 56-101 (165)
95 3fl2_A E3 ubiquitin-protein li 84.2 0.37 1.3E-05 39.8 1.7 47 208-288 53-99 (124)
96 1x4j_A Ring finger protein 38; 83.9 0.42 1.5E-05 35.5 1.8 33 233-291 43-75 (75)
97 1ify_A HHR23A, UV excision rep 83.7 2.6 8.9E-05 28.6 5.6 37 52-89 9-45 (49)
98 2k4x_A 30S ribosomal protein S 83.7 0.43 1.5E-05 33.5 1.6 29 275-303 17-46 (55)
99 3lrq_A E3 ubiquitin-protein li 82.7 0.32 1.1E-05 38.6 0.7 30 277-311 23-53 (100)
100 2jrp_A Putative cytoplasmic pr 82.7 0.7 2.4E-05 35.1 2.5 33 277-311 3-41 (81)
101 1bor_A Transcription factor PM 82.4 0.91 3.1E-05 31.6 2.9 27 233-288 23-49 (56)
102 1pft_A TFIIB, PFTFIIBN; N-term 81.1 0.79 2.7E-05 31.3 2.1 29 275-303 4-34 (50)
103 1jm7_B BARD1, BRCA1-associated 80.5 1 3.6E-05 36.6 3.1 30 208-246 23-53 (117)
104 1wfh_A Zinc finger (AN1-like) 80.3 1 3.4E-05 32.5 2.5 29 276-308 15-43 (64)
105 3nw0_A Non-structural maintena 80.3 0.79 2.7E-05 42.6 2.5 49 116-174 180-229 (238)
106 2g3q_A Protein YBL047C; endocy 79.7 3.3 0.00011 27.1 4.8 36 53-89 6-41 (43)
107 2ysj_A Tripartite motif-contai 79.7 0.48 1.6E-05 33.8 0.6 31 277-312 21-51 (63)
108 3hct_A TNF receptor-associated 79.4 0.62 2.1E-05 38.1 1.3 29 207-244 18-46 (118)
109 3j20_Y 30S ribosomal protein S 79.3 0.55 1.9E-05 32.3 0.8 28 275-303 18-47 (50)
110 2d8v_A Zinc finger FYVE domain 78.9 1.1 3.6E-05 32.4 2.2 33 114-149 6-39 (67)
111 1wg2_A Zinc finger (AN1-like) 78.8 1.2 4.2E-05 32.1 2.5 29 276-308 15-43 (64)
112 1vq8_Z 50S ribosomal protein L 78.4 0.63 2.1E-05 35.7 1.0 36 275-313 26-62 (83)
113 3hcs_A TNF receptor-associated 77.7 0.73 2.5E-05 40.2 1.4 31 207-246 18-48 (170)
114 1z6u_A NP95-like ring finger p 77.2 0.87 3E-05 39.1 1.7 47 208-288 79-125 (150)
115 1wfl_A Zinc finger protein 216 77.0 1.3 4.6E-05 32.8 2.3 27 277-307 26-52 (74)
116 1e4u_A Transcriptional repress 76.8 0.75 2.6E-05 34.7 1.0 34 277-311 12-45 (78)
117 4ic3_A E3 ubiquitin-protein li 76.5 0.76 2.6E-05 34.1 1.0 26 233-288 41-67 (74)
118 2ysl_A Tripartite motif-contai 76.4 0.69 2.4E-05 33.9 0.7 32 277-313 21-52 (73)
119 1rmd_A RAG1; V(D)J recombinati 76.2 1.1 3.7E-05 36.3 1.9 27 209-244 25-51 (116)
120 2jr6_A UPF0434 protein NMA0874 75.6 1.4 4.7E-05 32.4 2.1 29 276-304 8-37 (68)
121 1vg5_A RSGI RUH-014, rhomboid 74.8 4.6 0.00016 30.0 4.8 35 54-89 32-66 (73)
122 1wfp_A Zinc finger (AN1-like) 74.5 1.5 5.2E-05 32.5 2.1 29 275-307 24-52 (74)
123 2egp_A Tripartite motif-contai 74.3 1.1 3.9E-05 33.2 1.5 32 277-313 13-44 (79)
124 2ct2_A Tripartite motif protei 73.6 0.78 2.7E-05 35.0 0.3 35 277-312 16-50 (88)
125 3ng2_A RNF4, snurf, ring finge 73.6 0.84 2.9E-05 33.2 0.5 37 276-312 10-48 (71)
126 1iym_A EL5; ring-H2 finger, ub 73.4 0.99 3.4E-05 31.0 0.8 35 277-313 6-41 (55)
127 1wff_A Riken cDNA 2810002D23 p 73.3 1.9 6.6E-05 32.9 2.5 29 276-307 25-53 (85)
128 2yur_A Retinoblastoma-binding 73.1 1.1 3.8E-05 33.1 1.1 31 277-312 16-47 (74)
129 3ztg_A E3 ubiquitin-protein li 73.0 0.59 2E-05 36.2 -0.5 30 277-311 14-44 (92)
130 2d8t_A Dactylidin, ring finger 72.7 0.96 3.3E-05 33.1 0.7 31 277-312 16-46 (71)
131 1oai_A Nuclear RNA export fact 72.5 15 0.00051 25.9 6.9 40 50-89 6-45 (59)
132 2jrp_A Putative cytoplasmic pr 72.2 2.7 9.2E-05 31.8 3.0 26 278-311 33-61 (81)
133 1wji_A Tudor domain containing 71.4 6.9 0.00024 28.1 5.0 36 54-90 12-47 (63)
134 2xeu_A Ring finger protein 4; 71.0 1.2 4E-05 31.5 0.7 36 277-312 4-41 (64)
135 2dak_A Ubiquitin carboxyl-term 70.8 8.2 0.00028 27.6 5.3 35 54-89 12-46 (63)
136 2jne_A Hypothetical protein YF 70.5 2.1 7.3E-05 33.4 2.1 33 277-311 33-71 (101)
137 2djb_A Polycomb group ring fin 70.5 1.1 3.8E-05 32.8 0.6 30 277-311 16-46 (72)
138 1veg_A NEDD8 ultimate buster-1 70.5 9.2 0.00032 29.1 5.7 34 55-89 33-66 (83)
139 2jp7_A MRNA export factor MEX6 70.2 13 0.00043 26.1 6.0 41 49-89 4-44 (57)
140 2ckl_A Polycomb group ring fin 70.2 1.2 4.1E-05 35.6 0.7 31 277-312 16-47 (108)
141 1fre_A Nuclear factor XNF7; zi 70.1 2.9 0.0001 27.0 2.5 27 277-310 4-31 (42)
142 2kiz_A E3 ubiquitin-protein li 69.7 1.4 4.7E-05 31.9 0.9 34 277-312 15-48 (69)
143 1v87_A Deltex protein 2; ring- 69.5 1.6 5.4E-05 35.1 1.4 38 233-291 60-97 (114)
144 2yrg_A Tripartite motif-contai 69.1 2.6 8.8E-05 29.8 2.2 32 277-315 15-48 (59)
145 2ecj_A Tripartite motif-contai 68.8 0.91 3.1E-05 31.5 -0.2 30 277-311 16-45 (58)
146 2ecn_A Ring finger protein 141 68.3 1.5 5E-05 31.9 0.8 30 277-312 16-45 (70)
147 2ea6_A Ring finger protein 4; 67.7 1.4 4.9E-05 31.6 0.7 36 277-312 16-53 (69)
148 2ecm_A Ring finger and CHY zin 67.6 2.3 7.9E-05 28.9 1.7 34 277-312 6-40 (55)
149 2did_A Tripartite motif protei 67.5 2.9 0.0001 28.6 2.2 26 277-309 9-35 (53)
150 2y43_A E3 ubiquitin-protein li 67.4 1.4 4.8E-05 34.5 0.6 31 277-312 23-54 (99)
151 2csv_A Tripartite motif protei 66.5 2.6 9E-05 31.0 1.9 27 277-310 19-46 (72)
152 3knv_A TNF receptor-associated 66.3 1.5 5E-05 37.2 0.5 30 277-311 32-61 (141)
153 2ect_A Ring finger protein 126 66.2 2.8 9.5E-05 31.0 2.0 34 277-312 16-49 (78)
154 2knz_A Ubiquilin-4; cytoplasm, 66.1 13 0.00045 25.5 5.4 37 52-89 12-49 (53)
155 2ecw_A Tripartite motif-contai 65.9 1.7 5.8E-05 32.6 0.8 30 277-311 20-49 (85)
156 2yho_A E3 ubiquitin-protein li 65.5 1.9 6.5E-05 32.5 1.0 26 233-288 35-61 (79)
157 3l11_A E3 ubiquitin-protein li 65.5 3.4 0.00011 33.3 2.6 31 277-312 16-46 (115)
158 2c2l_A CHIP, carboxy terminus 64.8 3.8 0.00013 38.3 3.2 29 207-244 208-236 (281)
159 2csy_A Zinc finger protein 183 64.5 1.7 5.7E-05 32.6 0.5 30 277-311 16-45 (81)
160 2ep4_A Ring finger protein 24; 64.4 1.3 4.3E-05 32.6 -0.2 34 277-312 16-49 (74)
161 1x4w_A Hypothetical protein FL 64.2 1.3 4.4E-05 32.3 -0.2 29 276-307 15-45 (67)
162 2jy5_A Ubiquilin-1; UBA, alter 64.1 14 0.00046 25.3 5.1 34 54-88 15-49 (52)
163 2y1n_A E3 ubiquitin-protein li 64.0 4.7 0.00016 40.1 3.7 50 205-288 330-379 (389)
164 2ecv_A Tripartite motif-contai 63.2 1.9 6.4E-05 32.3 0.5 30 277-311 20-49 (85)
165 1wiv_A UBP14, ubiquitin-specif 63.1 18 0.00061 26.7 5.9 34 55-89 33-66 (73)
166 2yvr_A Transcription intermedi 62.6 3.2 0.00011 28.0 1.6 27 277-310 7-35 (50)
167 1chc_A Equine herpes virus-1 r 61.7 2.1 7.2E-05 30.7 0.5 31 276-311 5-36 (68)
168 3t7l_A Zinc finger FYVE domain 60.3 7.8 0.00027 29.9 3.7 37 112-148 16-54 (90)
169 1jm7_A BRCA1, breast cancer ty 59.0 2.2 7.6E-05 34.0 0.3 31 277-312 22-52 (112)
170 2dai_A Ubadc1, ubiquitin assoc 58.5 19 0.00065 27.3 5.5 36 54-90 32-67 (83)
171 2hf1_A Tetraacyldisaccharide-1 58.5 5.2 0.00018 29.3 2.2 27 277-303 9-36 (68)
172 2dkl_A Trinucleotide repeat co 57.9 20 0.0007 27.3 5.6 38 52-90 22-59 (85)
173 2ecl_A Ring-box protein 2; RNF 57.9 4.3 0.00015 30.5 1.7 24 290-313 39-62 (81)
174 3ddt_A E3 ubiquitin-protein li 57.8 4.2 0.00014 27.2 1.5 26 277-309 7-34 (48)
175 3bq3_A Defective in cullin ned 57.7 12 0.00041 35.2 5.2 43 48-90 12-54 (270)
176 2js4_A UPF0434 protein BB2007; 57.4 5.5 0.00019 29.3 2.2 29 276-304 8-37 (70)
177 2pk7_A Uncharacterized protein 56.5 6.3 0.00021 28.9 2.4 28 276-303 8-36 (69)
178 2dja_A Midline-2; tripartite m 55.8 4.9 0.00017 30.3 1.8 32 277-315 19-53 (84)
179 2cpw_A CBL-interacting protein 55.5 23 0.00078 25.3 5.2 35 54-89 22-57 (64)
180 2l0b_A E3 ubiquitin-protein li 55.5 1.9 6.6E-05 33.3 -0.6 35 277-313 41-75 (91)
181 3h0g_I DNA-directed RNA polyme 54.3 7.7 0.00026 31.3 2.8 28 276-303 4-36 (113)
182 3qt1_I DNA-directed RNA polyme 54.2 5.9 0.0002 33.1 2.1 29 275-303 23-56 (133)
183 3t6p_A Baculoviral IAP repeat- 53.2 8.2 0.00028 37.7 3.3 28 231-288 310-338 (345)
184 2d8u_A Ubiquitin ligase TRIM63 52.5 6.5 0.00022 27.9 1.9 32 277-315 9-43 (64)
185 2dah_A Ubiquilin-3; UBA domain 51.9 24 0.00083 24.3 4.7 35 54-89 12-47 (54)
186 3zyq_A Hepatocyte growth facto 51.9 44 0.0015 30.3 7.9 33 116-148 164-198 (226)
187 2dag_A Ubiquitin carboxyl-term 50.5 30 0.001 25.5 5.3 36 54-90 12-48 (74)
188 2jny_A Uncharacterized BCR; st 50.4 8.5 0.00029 28.0 2.2 29 276-304 10-39 (67)
189 1wgl_A TOLL-interacting protei 50.3 24 0.00083 24.8 4.6 38 52-89 10-48 (59)
190 4esj_A Type-2 restriction enzy 48.2 12 0.0004 34.3 3.2 21 267-288 26-47 (257)
191 4a0k_B E3 ubiquitin-protein li 47.9 3.8 0.00013 33.4 0.0 26 289-314 74-99 (117)
192 2xzm_9 RPS31E; ribosome, trans 47.5 7.9 0.00027 34.4 2.0 29 276-305 113-143 (189)
193 3dpl_R Ring-box protein 1; ubi 46.7 8.2 0.00028 30.8 1.8 25 290-314 64-88 (106)
194 1vej_A Riken cDNA 4931431F19; 46.3 46 0.0016 24.6 5.7 36 53-89 31-67 (74)
195 3nyb_B Protein AIR2; polya RNA 46.2 18 0.0006 27.5 3.5 49 236-310 5-55 (83)
196 1z60_A TFIIH basal transcripti 46.1 6.1 0.00021 28.0 0.8 34 209-249 17-51 (59)
197 1z2q_A LM5-1; membrane protein 46.0 18 0.0006 27.4 3.5 36 112-147 17-54 (84)
198 1weo_A Cellulose synthase, cat 45.8 31 0.0011 26.4 4.7 49 115-172 15-68 (93)
199 1weo_A Cellulose synthase, cat 45.8 13 0.00045 28.4 2.7 53 215-292 21-74 (93)
200 2egm_A Tripartite motif-contai 45.4 4.5 0.00015 28.3 0.1 26 277-309 19-45 (57)
201 3u5c_f 40S ribosomal protein S 45.4 11 0.00037 32.2 2.4 29 277-305 119-150 (152)
202 1twf_I B12.6, DNA-directed RNA 45.3 8.4 0.00029 31.6 1.7 28 276-303 4-36 (122)
203 1vek_A UBP14, ubiquitin-specif 45.3 40 0.0014 25.5 5.4 35 55-90 33-68 (84)
204 1twf_L ABC10-alpha, DNA-direct 44.9 7 0.00024 28.7 1.0 24 277-301 29-53 (70)
205 2f42_A STIP1 homology and U-bo 44.5 14 0.00047 32.5 3.0 30 206-244 105-134 (179)
206 3m7n_A Putative uncharacterize 44.5 9.6 0.00033 33.5 2.1 24 277-302 141-165 (179)
207 2akl_A PHNA-like protein PA012 44.4 12 0.0004 30.9 2.3 28 275-303 26-54 (138)
208 1dv0_A DNA repair protein HHR2 44.1 8.2 0.00028 25.9 1.2 35 54-89 7-41 (47)
209 2cp9_A EF-TS, EF-TSMT, elongat 43.8 31 0.0011 24.7 4.3 38 53-90 11-48 (64)
210 1joc_A EEA1, early endosomal a 43.3 15 0.00052 30.1 3.0 33 276-310 69-102 (125)
211 2lli_A Protein AIR2; RNA surve 43.1 27 0.00091 28.4 4.5 21 234-254 20-41 (124)
212 1joc_A EEA1, early endosomal a 42.7 15 0.00052 30.1 2.9 37 112-148 65-103 (125)
213 1whc_A RSGI RUH-027, UBA/UBX 3 42.4 36 0.0012 24.3 4.5 35 55-90 13-48 (64)
214 1odh_A MGCM1; transcription fa 42.1 16 0.00054 31.2 2.8 19 277-301 111-131 (174)
215 1y02_A CARP2, FYVE-ring finger 41.3 10 0.00035 31.0 1.6 38 112-149 15-54 (120)
216 3ghg_A Fibrinogen alpha chain; 40.9 56 0.0019 33.3 7.1 15 433-447 175-189 (562)
217 1wr1_B Ubiquitin-like protein 40.3 67 0.0023 22.4 5.5 37 52-89 18-55 (58)
218 2yw8_A RUN and FYVE domain-con 40.0 14 0.00048 27.8 2.1 35 113-147 16-52 (82)
219 2zet_C Melanophilin; complex, 39.8 23 0.00079 30.2 3.7 35 276-311 68-103 (153)
220 2lli_A Protein AIR2; RNA surve 39.5 38 0.0013 27.5 4.9 18 237-254 43-60 (124)
221 1qxf_A GR2, 30S ribosomal prot 39.4 20 0.00068 25.8 2.6 33 208-243 8-41 (66)
222 2kpi_A Uncharacterized protein 39.3 17 0.00059 25.3 2.3 25 277-303 11-38 (56)
223 1wff_A Riken cDNA 2810002D23 p 39.2 31 0.0011 26.2 3.8 29 115-143 24-52 (85)
224 1dl6_A Transcription factor II 38.1 19 0.00064 25.3 2.3 26 276-301 11-38 (58)
225 2l2d_A OTU domain-containing p 37.6 91 0.0031 22.1 5.7 38 51-88 17-54 (73)
226 1ee8_A MUTM (FPG) protein; bet 37.1 14 0.00047 34.7 2.0 24 277-300 236-262 (266)
227 2jne_A Hypothetical protein YF 36.9 23 0.00078 27.6 2.8 26 277-309 62-89 (101)
228 1dvp_A HRS, hepatocyte growth 36.9 19 0.00064 32.6 2.8 32 277-310 162-194 (220)
229 2bwb_A Ubiquitin-like protein 35.9 84 0.0029 20.7 5.2 36 52-88 8-44 (46)
230 3fyb_A Protein of unknown func 35.6 17 0.00059 28.3 1.9 17 139-155 41-57 (104)
231 2xzf_A Formamidopyrimidine-DNA 35.5 12 0.00042 35.1 1.4 24 277-300 243-269 (271)
232 3j20_W 30S ribosomal protein S 35.4 24 0.00083 25.2 2.5 33 208-243 16-49 (63)
233 3u6p_A Formamidopyrimidine-DNA 35.2 12 0.00041 35.3 1.3 24 277-300 246-272 (273)
234 2o35_A Hypothetical protein DU 35.1 18 0.0006 28.3 1.9 17 139-155 42-58 (105)
235 3qt1_I DNA-directed RNA polyme 35.0 17 0.00057 30.3 1.9 30 205-237 22-55 (133)
236 2apo_B Ribosome biogenesis pro 34.9 16 0.00054 25.9 1.5 29 275-316 5-33 (60)
237 2lbm_A Transcriptional regulat 34.6 1.2E+02 0.0039 25.4 7.1 48 115-170 62-116 (142)
238 3k9o_A Ubiquitin-conjugating e 34.5 52 0.0018 29.2 5.3 35 54-89 166-200 (201)
239 1zbd_B Rabphilin-3A; G protein 34.4 15 0.00051 30.6 1.6 27 118-144 57-86 (134)
240 1k82_A Formamidopyrimidine-DNA 34.3 13 0.00045 34.9 1.4 24 277-300 241-267 (268)
241 1k3x_A Endonuclease VIII; hydr 33.7 13 0.00045 34.7 1.3 24 277-300 235-261 (262)
242 3htk_C E3 SUMO-protein ligase 33.7 14 0.00049 34.5 1.4 30 277-311 182-212 (267)
243 1x4u_A Zinc finger, FYVE domai 33.6 30 0.001 26.1 3.0 36 112-147 10-47 (84)
244 3h0g_I DNA-directed RNA polyme 33.4 22 0.00076 28.6 2.4 30 206-238 3-36 (113)
245 3e46_A Ubiquitin-conjugating e 33.3 64 0.0022 29.9 5.9 35 54-89 218-252 (253)
246 2xzm_6 RPS27E; ribosome, trans 32.6 27 0.00093 26.2 2.5 34 208-244 33-67 (81)
247 2gvi_A Conserved hypothetical 32.1 27 0.00091 31.3 3.0 63 81-146 138-201 (204)
248 1wii_A Hypothetical UPF0222 pr 31.5 22 0.00074 27.1 1.9 27 277-303 24-57 (85)
249 1vfy_A Phosphatidylinositol-3- 31.2 22 0.00076 26.0 1.9 31 117-147 12-44 (73)
250 3h0g_L DNA-directed RNA polyme 30.8 21 0.00072 25.6 1.6 25 277-302 22-47 (63)
251 2ekk_A UBA domain from E3 ubiq 30.6 87 0.003 20.5 4.7 34 54-89 12-45 (47)
252 1twf_I B12.6, DNA-directed RNA 30.2 27 0.00092 28.5 2.4 30 206-238 3-36 (122)
253 3mjh_B Early endosome antigen 29.9 15 0.00051 22.9 0.6 14 114-127 3-16 (34)
254 1qkl_A RPB6, DNA-directed RNA 29.9 1.8E+02 0.006 23.8 7.1 24 36-59 51-74 (127)
255 2ko5_A Ring finger protein Z; 29.9 22 0.00074 27.6 1.6 47 115-175 27-74 (99)
256 3iz6_X 40S ribosomal protein S 29.7 51 0.0018 25.0 3.6 42 208-252 37-79 (86)
257 2zet_C Melanophilin; complex, 29.3 26 0.00088 29.9 2.2 31 115-145 67-100 (153)
258 3zyq_A Hepatocyte growth facto 28.8 29 0.00099 31.5 2.7 32 277-310 165-197 (226)
259 2aus_D NOP10, ribosome biogene 27.6 22 0.00077 25.1 1.3 29 275-316 4-32 (60)
260 2dhy_A CUE domain-containing p 26.9 1.4E+02 0.0048 21.5 5.5 38 52-89 19-57 (67)
261 2lbc_A Ubiquitin carboxyl-term 26.7 92 0.0032 25.2 5.2 35 54-89 81-115 (126)
262 3d00_A Tungsten formylmethanof 26.7 20 0.00067 31.9 1.0 57 82-146 130-186 (191)
263 2bl6_A Nucleocapsid protein P1 26.6 46 0.0016 20.6 2.6 16 238-253 2-17 (37)
264 2crn_A Ubash3A protein; compac 26.6 91 0.0031 22.1 4.4 35 55-90 13-48 (64)
265 1tr8_A Conserved protein (MTH1 25.8 1E+02 0.0035 24.2 5.0 31 53-83 67-97 (102)
266 3u5c_b RP61, YS20, 40S ribosom 25.7 33 0.0011 25.8 1.9 36 208-246 35-71 (82)
267 1deq_A Fibrinogen (alpha chain 25.5 2.2E+02 0.0076 27.7 8.2 15 433-447 178-192 (390)
268 1wfk_A Zinc finger, FYVE domai 25.4 40 0.0014 25.7 2.5 32 116-147 9-42 (88)
269 1nui_A DNA primase/helicase; z 24.9 29 0.00099 31.9 1.9 22 277-301 15-41 (255)
270 3lqh_A Histone-lysine N-methyl 24.4 39 0.0013 29.7 2.6 72 117-194 3-82 (183)
271 2wt7_B Transcription factor MA 24.3 2.4E+02 0.0082 21.5 7.1 68 392-477 21-89 (90)
272 1m1j_A Fibrinogen alpha subuni 24.1 1.5E+02 0.0051 29.7 6.8 89 333-447 96-190 (491)
273 3a1b_A DNA (cytosine-5)-methyl 24.0 35 0.0012 29.2 2.1 34 115-151 78-114 (159)
274 1gh9_A 8.3 kDa protein (gene M 23.7 32 0.0011 25.2 1.6 15 278-293 6-20 (71)
275 2a20_A Regulating synaptic mem 23.5 36 0.0012 23.9 1.6 34 277-312 10-44 (62)
276 3j21_g 50S ribosomal protein L 23.3 20 0.00069 24.5 0.3 11 275-285 13-23 (51)
277 2cwb_A Chimera of immunoglobul 23.2 1.2E+02 0.0041 24.1 4.9 35 54-89 69-104 (108)
278 4gew_A 5'-tyrosyl-DNA phosphod 22.1 1.4E+02 0.0047 28.8 6.4 37 54-90 48-84 (362)
279 2a51_A Nucleocapsid protein; s 21.5 39 0.0013 21.2 1.5 17 238-254 2-18 (39)
280 3mca_A HBS1, elongation factor 21.5 20 0.00067 37.8 0.0 37 52-88 35-74 (592)
281 3u5c_f 40S ribosomal protein S 21.4 65 0.0022 27.2 3.3 33 207-241 118-151 (152)
282 1z67_A Hypothetical protein S4 21.2 1.1E+02 0.0038 25.3 4.5 39 38-76 60-99 (135)
283 1dvp_A HRS, hepatocyte growth 20.5 39 0.0013 30.5 1.8 33 116-148 161-195 (220)
284 2cp8_A NEXT to BRCA1 gene 1 pr 20.4 1.9E+02 0.0064 19.9 4.8 27 63-89 20-47 (54)
285 1k81_A EIF-2-beta, probable tr 20.3 38 0.0013 21.2 1.2 25 278-302 2-30 (36)
286 3v2d_5 50S ribosomal protein L 20.1 37 0.0013 24.0 1.2 13 275-287 29-41 (60)
287 2hu9_A MERP, mercuric transpor 20.0 1.3E+02 0.0043 24.8 4.6 44 161-221 2-48 (130)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.80 E-value=7.3e-21 Score=139.56 Aligned_cols=56 Identities=50% Similarity=1.156 Sum_probs=48.9
Q ss_pred HHHhCCcCCCCCCCCccccCCCCceEec---cccceeccccccccCCCCccccCCCcCCCCch
Q 011726 271 WITVHTKPCPKCHKPVEKNGGCNLVSCI---CGQAFCWLCGGATGRDHTWSRIAGHSCGRYKE 330 (478)
Q Consensus 271 ~i~~~~k~CP~C~~~IeK~~GCnhm~C~---C~~~FCw~C~~~~~~~H~~~~~~~~~C~~~~~ 330 (478)
||.+++|+||+|+++|||++|||||+|+ |+++|||+|+++|.. |+ ...|+||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~-~~---~~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP-HG---SAWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG-GG---TSSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc-CC---CccccCCCccc
Confidence 6788999999999999999999999995 999999999999863 32 23589999975
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.66 E-value=6e-17 Score=131.47 Aligned_cols=87 Identities=20% Similarity=0.476 Sum_probs=78.1
Q ss_pred ccccccccccccccCCceec-CCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCc--cCHHHHHHHhcCCCchHHHH
Q 011726 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI--CDEAVVRNLVSKKHPNLAEK 191 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~--~~~~~i~~ll~~~~~e~~~~ 191 (478)
+.++|+||+++++...++.+ +|||.||++||+.|+..+|.+|...+++||.++|... +++..++.+++ ++++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~---~~~~~k 80 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA---AEIMQR 80 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSC---HHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCC---HHHHHH
Confidence 56899999999876666666 7999999999999999999988766899999999999 99999999998 899999
Q ss_pred HHHHHHHHHHhhC
Q 011726 192 FERFLLESFIEDN 204 (478)
Q Consensus 192 y~~~~~~~~v~~~ 204 (478)
|.+++++.+++++
T Consensus 81 y~~~~~~~~v~~~ 93 (94)
T 1wim_A 81 YKKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHHSSCSSC
T ss_pred HHHHHHHhhhccC
Confidence 9999999887654
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.31 E-value=4.8e-14 Score=111.90 Aligned_cols=77 Identities=23% Similarity=0.526 Sum_probs=67.7
Q ss_pred chHHHHHHHHHHHHHHhhCCCcccCCCCCCCCceEEeccccceeeEec-CCccccccccCCC---CCCCCcchhHHHHHH
Q 011726 186 PNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEA---HSPCSCSMWDLWAKK 261 (478)
Q Consensus 186 ~e~~~~y~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~---H~~~~C~~~~~~~~~ 261 (478)
++++++|++++++++|..++.++||| +|++++...+. ...|+|+ |+..||+.|+.+| |.|++|..+++|..+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP---~C~~~~~~~~~-~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA---QCSFGFIYERE-QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS---SSCCCEECCCS-CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc---CCCchheecCC-CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 67788999999999999999999999 79999876654 4559998 9999999999999 999999999999987
Q ss_pred hhhhH
Q 011726 262 CRDES 266 (478)
Q Consensus 262 ~~~~~ 266 (478)
...++
T Consensus 80 n~~~~ 84 (86)
T 2ct7_A 80 NSGPS 84 (86)
T ss_dssp HTCSS
T ss_pred Ccccc
Confidence 65554
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-12 Score=101.59 Aligned_cols=65 Identities=26% Similarity=0.587 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHHHhhCCCcccCCCCCCCCceEEeccccceeeEe------cCCccccccccCCCCCCCCcch
Q 011726 186 PNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVEC------ACGAQFCFSCLSEAHSPCSCSM 254 (478)
Q Consensus 186 ~e~~~~y~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C------~C~~~fC~~C~~~~H~~~~C~~ 254 (478)
++++++|++++++++|..+. ++||| +|+|++++..++. ...+.| .|++.||+.|+.+||. .+|..
T Consensus 5 ~~~~~rY~~~~~e~~v~~~~-~~~CP-~p~C~~~v~~~~~-~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 5 EEQYNRYQQYGAEECVLQMG-GVLCP-RPGCGAGLLPEPD-QRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCSCCCSSSCCSSCCCS-SCCCC-SSSCCCCCCCCSC-TTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred HHHHHHHHHHHHHHHhhhCC-cEECC-CCCCCcccEECCC-CCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 78889999999999998886 89999 6999999987653 345899 5999999999999999 99975
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.00 E-value=1.5e-11 Score=105.67 Aligned_cols=115 Identities=25% Similarity=0.575 Sum_probs=77.0
Q ss_pred cccccccccccccc-----CCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHHHHHHHhcCCCchHH
Q 011726 115 STVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLA 189 (478)
Q Consensus 115 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~ 189 (478)
+.++|+||++.+.. ..++.++|||.||.+||..|+.. ...||. |...+....+..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~l~-------- 67 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPIY-------- 67 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--------CSBCTT--TCCBCTTTCEEECB--------
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--------CCCCCC--CCCcCccccccccc--------
Confidence 46899999998742 12377899999999999999863 248998 88877554322211
Q ss_pred HHHHHHHHHHHHhhCCCcccCCCCCCCCceEEecc-ccceeeEecCCccccccccCCCCCCCCcchhHHHHHHhhhhHHH
Q 011726 190 EKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE-VEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESET 268 (478)
Q Consensus 190 ~~y~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~-~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~ 268 (478)
.+.....|| -|...+.... .....+..+||+.||..|... |..
T Consensus 68 -------------i~~~~~~C~---iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~~-------- 111 (133)
T 4ap4_A 68 -------------IGSGTVSCP---ICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SLK-------- 111 (133)
T ss_dssp -------------CSSSSCBCT---TTCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HHH--------
T ss_pred -------------cCCCCCCCC---CCCCccccccccCcceEeCCCCChhhHHHHHH------------HHH--------
Confidence 122345787 6866544221 122235667999999999653 321
Q ss_pred HHHHHhCCcCCCCCCCCcccc
Q 011726 269 VNWITVHTKPCPKCHKPVEKN 289 (478)
Q Consensus 269 ~~~i~~~~k~CP~C~~~IeK~ 289 (478)
..+.||.|+..|.++
T Consensus 112 ------~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 ------NANTCPTCRKKINHK 126 (133)
T ss_dssp ------HCSBCTTTCCBCCGG
T ss_pred ------cCCCCCCCCCcCChh
Confidence 127999999999865
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.69 E-value=1.7e-08 Score=90.60 Aligned_cols=83 Identities=25% Similarity=0.502 Sum_probs=57.7
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHHHHHHHhcCCCchHHHHHH
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKFE 193 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~~~y~ 193 (478)
.+.+.|+||++.+ .+++.++|||.||..|+..++... ...||. |...+.... ++. ..
T Consensus 16 ~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~---~~------ 72 (170)
T 3hcs_A 16 ESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFP---DN------ 72 (170)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEE---CH------
T ss_pred CCCCCCCCCChhh--cCcEECCCCCHHHHHHHHHHHHhC-------CCCCCC--CccCcchhh---hhh---hH------
Confidence 4678999999986 467788999999999999999752 238998 888776542 222 11
Q ss_pred HHHHHHHHhhCCCcccCCCCCCCCceEEecc
Q 011726 194 RFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 224 (478)
Q Consensus 194 ~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 224 (478)
.++..+. .....|| +.+|+..+....
T Consensus 73 --~~~~~i~--~l~v~C~-n~GC~~~~~~~~ 98 (170)
T 3hcs_A 73 --FAKREIL--SLMVKCP-NEGCLHKMELRH 98 (170)
T ss_dssp --HHHHHHH--TSEEECC-STTCCCEEEGGG
T ss_pred --HHHHHHh--hcccCCC-CCCCCceecHhH
Confidence 1111122 2345899 579998887655
No 7
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=1.6e-07 Score=73.65 Aligned_cols=55 Identities=27% Similarity=0.687 Sum_probs=44.6
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCH
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (478)
...+.|+||++.+ .+++.++|||.||..|+..++..+...+. ...||. |...+..
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~--~~~CP~--Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELL--TQPLSLDCGHSFCQACLTANHKKSMLDKG--ESSCPV--CRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCC--SSCBCCSSSCCBCTTHHHHHHHHHHHTTS--CCCCTT--TCCSSCS
T ss_pred cCCCCCCCCCccc--CCceeCCCCCHHHHHHHHHHHHHhhcCCC--CCcCCC--CCCccCH
Confidence 3568999999987 45677899999999999999998765443 579998 8877654
No 8
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=2.5e-07 Score=68.35 Aligned_cols=45 Identities=31% Similarity=0.714 Sum_probs=36.4
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCC
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMA 165 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~ 165 (478)
.+.+.|+||++.+ .+++.++|||.||..|+..++.. .+ ....||.
T Consensus 18 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~---~~--~~~~CP~ 62 (63)
T 2ysj_A 18 QEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGET---SC--GFFKCPL 62 (63)
T ss_dssp CCCCBCTTTCSBC--SSCEECTTSSEECHHHHHHHHHH---CS--SCCCCSC
T ss_pred ccCCCCCcCCchh--CCeEEeCCCCcchHHHHHHHHHc---CC--CCCcCcC
Confidence 4568999999987 46778899999999999999985 11 2468986
No 9
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=9.1e-08 Score=75.69 Aligned_cols=60 Identities=25% Similarity=0.643 Sum_probs=45.6
Q ss_pred cccccccccccccccCC--ceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHHHHHHH
Q 011726 114 SSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNL 180 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~l 180 (478)
.+...|+||++.+.... ++.++|||.||..|+..|+... + ....||. |...+....+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~--~~~~CP~--Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---I--NGVRCPF--CSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---S--SCBCCTT--TCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---C--CCcCCCC--CCCcccchhHHHH
Confidence 35689999999975332 6778999999999999999763 1 2579998 8887765544443
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.5e-07 Score=70.42 Aligned_cols=52 Identities=29% Similarity=0.708 Sum_probs=41.0
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCH
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (478)
...+.|+||++.+ .+++.++|||.||..|+..++.. ......||. |...+..
T Consensus 18 ~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~--Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGET-----SCGFFKCPL--CKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSS-----SCSCCCCSS--SCCCCCC
T ss_pred ccCCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHc-----CCCCCCCCC--CCCcCCc
Confidence 4568999999986 46778899999999999999862 113578998 8876653
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.7e-07 Score=70.05 Aligned_cols=51 Identities=22% Similarity=0.593 Sum_probs=40.5
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
.+.+.|+||++.+ .+++.++|||.||..|+..++. . ....||. |...+...
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~----~---~~~~CP~--Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVL--CSPKQTECGHRFCESCMAALLS----S---SSPKCTA--CQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEE--SSCCCCSSSCCCCHHHHHHHHT----T---SSCCCTT--TCCCCCTT
T ss_pred CcCCCCCCCChHh--cCeeECCCCCHHHHHHHHHHHH----h---CcCCCCC--CCcCCChh
Confidence 3568999999987 4566789999999999999986 1 2468998 88776543
No 12
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.39 E-value=1.8e-07 Score=72.33 Aligned_cols=53 Identities=28% Similarity=0.561 Sum_probs=39.7
Q ss_pred cccccccccccccccCCceec--CCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 114 SSTVMCDICMEEVAGDKATKM--DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l--~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
.+..+|+||++.+...++..+ +|||.||..||..++.. + ...||. |...+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~---~~~CP~--CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E---NGLCPA--CRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S---CSBCTT--TCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C---CCCCCC--CCCccCCC
Confidence 356899999998754444444 49999999999988742 2 368998 88876543
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.39 E-value=3.7e-07 Score=71.46 Aligned_cols=56 Identities=27% Similarity=0.612 Sum_probs=43.7
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
...+.|+||++.+ .+++.++|||.||..|+..|+......+ ....||. |...+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL--KEPVSADCNHSFCRACITLNYESNRNTD--GKGNCPV--CRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBCTT--SCBCCTT--TCCCCCTT
T ss_pred ccCCCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccCCC--CCCCCCC--CCCcCCHH
Confidence 3568999999986 4567789999999999999998754222 3579998 88876543
No 14
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.39 E-value=2.7e-08 Score=77.16 Aligned_cols=57 Identities=25% Similarity=0.564 Sum_probs=43.5
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
.+.++|+||++.+ .+++.++|||.||..|+..|+......+. ....||. |...+...
T Consensus 10 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~-~~~~CP~--Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELL--TEPLSLDCGHSLCRACITVSNKEAVTSMG-GKSSCPV--CGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEEC--SSCCCCSSSCCCCHHHHSCCCCCCSSSCC-CCCCCSS--SCCCCCSS
T ss_pred ccCCCCcCCCccc--CCeeECCCCCHHHHHHHHHHHHhcccCCC-CCCcCCC--CCCcCCHh
Confidence 3568999999987 45777899999999999999875432222 3579998 88877543
No 15
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.38 E-value=3.8e-07 Score=76.54 Aligned_cols=84 Identities=26% Similarity=0.512 Sum_probs=58.2
Q ss_pred ccccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHHHHHHHhcCCCchHHHHH
Q 011726 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKF 192 (478)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~~~y 192 (478)
..+.+.|+||++.+ .+++.++|||.||..|+..++... ...||. |...+.... +.. ..
T Consensus 15 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~---~~----- 72 (118)
T 3hct_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFP---DN----- 72 (118)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEE---CH-----
T ss_pred CCCCCCCCcCChhh--cCeEECCcCChhhHHHHHHHHhhC-------CCCCCC--CCCCcCHHh---ccc---CH-----
Confidence 34678999999986 467788999999999999998753 238998 888776532 222 11
Q ss_pred HHHHHHHHHhhCCCcccCCCCCCCCceEEecc
Q 011726 193 ERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 224 (478)
Q Consensus 193 ~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 224 (478)
.++..+. .....|| +.+|+..+....
T Consensus 73 ---~l~~~i~--~l~v~C~-n~gC~~~~~~~~ 98 (118)
T 3hct_A 73 ---FAKREIL--SLMVKCP-NEGCLHKMELRH 98 (118)
T ss_dssp ---HHHHHHH--TSEEECS-STTCCCEEEGGG
T ss_pred ---HHHHHHc--cceeECC-CCCCCCEEeeHH
Confidence 1112222 2345899 589998887655
No 16
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=3.2e-07 Score=73.75 Aligned_cols=56 Identities=25% Similarity=0.460 Sum_probs=44.3
Q ss_pred ccccccccccccccCCceecC-CCCccchhhHHHHHHHHHhcCCcccccCCCcccCCc-cCH
Q 011726 115 STVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI-CDE 174 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~-~~~ 174 (478)
..+.|+||++.+ .+++.++ |||.||+.|+..||...-. ......||..+|... +..
T Consensus 6 ~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccC--cCCCCCCCcCcCcccccCH
Confidence 568999999986 5788885 9999999999999986421 113579999999865 544
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.1e-07 Score=70.54 Aligned_cols=54 Identities=22% Similarity=0.508 Sum_probs=43.2
Q ss_pred ccccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHHHHH
Q 011726 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVR 178 (478)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~~i~ 178 (478)
......|+||++.+ .+++.++|||.||..|+..++.. ...||. |...+....+.
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~ 65 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWL--------GKRCAL--CRQEIPEDFLD 65 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTC--------SSBCSS--SCCBCCHHHHS
T ss_pred CCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHC--------CCcCcC--cCchhCHhhcc
Confidence 34568999999986 46778899999999999998753 258998 99988776543
No 18
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.32 E-value=2.8e-07 Score=73.64 Aligned_cols=49 Identities=20% Similarity=0.670 Sum_probs=39.8
Q ss_pred cccccccccccccccCCceecC-CCCccchhhHHHHHHHHHhcCCcccccCCCcccCCcc
Q 011726 114 SSTVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~ 172 (478)
.+.+.|+||++.+ .+++.++ |||.||..|+..++.. .+ ...||. |...+
T Consensus 11 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---~~---~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLE---SD---EHTCPT--CHQND 60 (92)
T ss_dssp CTTTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHH---CT---TCCCTT--TCCSS
T ss_pred CcCCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHh---cC---CCcCcC--CCCcC
Confidence 3568999999987 4678888 9999999999999874 12 368998 87765
No 19
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.31 E-value=4e-07 Score=65.17 Aligned_cols=48 Identities=27% Similarity=0.643 Sum_probs=38.2
Q ss_pred cccccccccccccc--CCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCcc
Q 011726 115 STVMCDICMEEVAG--DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (478)
Q Consensus 115 ~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~ 172 (478)
....|+||++.+.. ..+..++|||.||..|+..|+... ..||. |...+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcC
Confidence 45789999999743 246677999999999999998762 57998 87655
No 20
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.31 E-value=3.3e-07 Score=76.59 Aligned_cols=83 Identities=22% Similarity=0.573 Sum_probs=56.4
Q ss_pred ccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHHHHHHHhcCCCchHHHHHHH
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKFER 194 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~~~y~~ 194 (478)
+.+.|+||++.+ .+++.++|||.||..|+..++... ...||. |...+....+...+ .. ..
T Consensus 22 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~----~~----l~- 81 (116)
T 1rmd_A 22 KSISCQICEHIL--ADPVETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPV----KS----FL- 81 (116)
T ss_dssp HHTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCC----HH----HH-
T ss_pred CCCCCCCCCcHh--cCcEEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccH----HH----HH-
Confidence 568999999986 467779999999999999999752 257998 88887664332111 11 11
Q ss_pred HHHHHHHhhCCCcccCCCCCCCCceEEecc
Q 011726 195 FLLESFIEDNKMVKWCPSTPHCGNAIRVEE 224 (478)
Q Consensus 195 ~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 224 (478)
..+.. ...+|| +.+|+..+....
T Consensus 82 ----~~i~~--l~v~C~-~~gC~~~~~~~~ 104 (116)
T 1rmd_A 82 ----NILNS--LMVKCP-AQDCNEEVSLEK 104 (116)
T ss_dssp ----HHHHH--CEEECC-STTCCCEEEHHH
T ss_pred ----HHHHH--hcCCCC-CCCCcchhhHhH
Confidence 11111 234899 479998877544
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=9.2e-07 Score=68.81 Aligned_cols=48 Identities=29% Similarity=0.690 Sum_probs=39.7
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
...+.|+||++.+ .+++.++|||.||..|+..++.. ...||. |...+.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC--CSEEECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCCcCCCchh--cCeeEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 3568999999987 45778899999999999999864 358998 888765
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.28 E-value=1e-06 Score=67.31 Aligned_cols=48 Identities=21% Similarity=0.706 Sum_probs=39.3
Q ss_pred cccccccccccccccCCceecC-CCCccchhhHHHHHHHHHhcCCcccccCCCcccCCc
Q 011726 114 SSTVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI 171 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~ 171 (478)
...+.|+||++.+ .+++.++ |||.||..|+..++... + ...||. |...
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~ 61 (74)
T 2yur_A 13 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQN 61 (74)
T ss_dssp CGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS---S---SSCCSS--SCCS
T ss_pred CCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc---C---CCcCCC--CCCc
Confidence 4578999999987 4677888 99999999999999752 2 368998 8774
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.2e-06 Score=66.50 Aligned_cols=50 Identities=32% Similarity=0.830 Sum_probs=39.9
Q ss_pred cccccccccccccccCCceec-CCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 114 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
...+.|+||++.+. +++.+ +|||.||..|+..|+.. ...||. |...+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSS
T ss_pred CCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcc
Confidence 45789999999873 46666 99999999999999964 258998 88776543
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.26 E-value=3.8e-07 Score=74.15 Aligned_cols=51 Identities=25% Similarity=0.516 Sum_probs=41.8
Q ss_pred ccccccccccccccCCcee-cCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHHH
Q 011726 115 STVMCDICMEEVAGDKATK-MDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~~ 176 (478)
+.+.|+||++.+ .+++. ++|||.||..|+..|+... ...||. |...+....
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGG
T ss_pred CCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHH
Confidence 568899999987 46777 8999999999999999862 268998 888776543
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.23 E-value=5.6e-07 Score=69.48 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=40.4
Q ss_pred ccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCH
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (478)
..+.|+||++.+ .+++.++|||.||..|+..|+.. | ...||. |...+..
T Consensus 7 ~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~~----~---~~~CP~--C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLDA----G---HKTCPK--SQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHTT----T---CCBCTT--TCCBCSS
T ss_pred ccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHHH----C---cCCCCC--CcCCCCh
Confidence 568999999986 57788899999999999999962 2 368998 8877654
No 26
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.23 E-value=5.3e-07 Score=74.71 Aligned_cols=53 Identities=23% Similarity=0.557 Sum_probs=41.8
Q ss_pred ccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHHH
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~~ 176 (478)
..+.|+||++.+ .+++.++|||.||..|+..++... . ....||. |...+....
T Consensus 20 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~--Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQK--K---GPSQCPL--CKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCC--SSCCBCTTSCCCCSHHHHHHHHSS--S---SSCCCTT--TSCCCCTTT
T ss_pred CCCCCcccChhh--cCeEECCCCCHHHHHHHHHHHHhC--C---CCCCCcC--CCCcCCHhh
Confidence 357899999986 466778999999999999998752 1 2478998 888776543
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.22 E-value=6.4e-07 Score=75.81 Aligned_cols=49 Identities=29% Similarity=0.556 Sum_probs=40.3
Q ss_pred ccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCH
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (478)
..+.|+||++.+ .+++.++|||.||..|+..++.. ....||. |...+..
T Consensus 51 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 457899999987 47788899999999999999872 2368998 8877654
No 28
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.21 E-value=3.4e-07 Score=76.43 Aligned_cols=51 Identities=24% Similarity=0.593 Sum_probs=41.0
Q ss_pred ccccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCH
Q 011726 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (478)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (478)
..+.+.|+||++.+ .+++.++|||.||..|+..++.. + ...||. |...+..
T Consensus 12 ~~~~~~C~iC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEIL--VEPVTLPCNHTLCKPCFQSTVEK----A---SLCCPF--CRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBC--SSCEECTTSCEECHHHHCCCCCT----T---TSBCTT--TCCBCHH
T ss_pred CCCCCCCccCCccc--CceeEcCCCCHHhHHHHHHHHhH----C---cCCCCC--CCcccCc
Confidence 34578999999986 46788899999999999988742 2 368998 8887754
No 29
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.21 E-value=4.3e-07 Score=78.67 Aligned_cols=48 Identities=23% Similarity=0.637 Sum_probs=38.1
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCcc
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~ 172 (478)
...+.|+||++.+ .+++.++|||.||..|+..++.. + ...||. |...+
T Consensus 29 ~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~----~---~~~CP~--Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSS----G---PQNCAA--CVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGG----S---CEECHH--HHHTT
T ss_pred CcCcCCCCCChhh--cCcEECCCCCccCHHHHHHHHhc----C---CCCCCC--CCCcc
Confidence 4678999999986 46788899999999999999852 2 358998 66543
No 30
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=9.9e-07 Score=66.13 Aligned_cols=50 Identities=30% Similarity=0.707 Sum_probs=38.5
Q ss_pred cccccccccccccccC-----CceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 114 SSTVMCDICMEEVAGD-----KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~-----~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
.....|+||++.+... .++.++|||.||..|+..|+.. ...||. |...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccC
Confidence 4568999999987421 1267899999999999999875 248998 877654
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=9.9e-07 Score=63.74 Aligned_cols=45 Identities=27% Similarity=0.736 Sum_probs=35.1
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCC
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMA 165 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~ 165 (478)
.....|+||++.+ .+++.++|||.||..|+..|+... . ....||.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYL--KEPVIIECGHNFCKACITRWWEDL--E---RDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBC--SSCCCCSSCCCCCHHHHHHHTTSS--C---CSCCCSC
T ss_pred ccCCCCccCCccc--CccEeCCCCCccCHHHHHHHHHhc--C---CCCCCCC
Confidence 3568999999987 456778999999999999997531 1 2468886
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.20 E-value=8.4e-07 Score=65.93 Aligned_cols=51 Identities=24% Similarity=0.519 Sum_probs=37.8
Q ss_pred ccccccccc-ccccC--CceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 116 TVMCDICME-EVAGD--KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 116 ~~~C~IC~e-~~~~~--~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
...|+||++ .+... .++.++|||.||..|+..++.. + ...||. |...+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G---AGNCPE--CGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T---SSSCTT--TCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C---CCcCCC--CCCccccc
Confidence 468999999 55322 1245799999999999999763 2 368998 88876544
No 33
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.19 E-value=2.1e-06 Score=64.47 Aligned_cols=49 Identities=20% Similarity=0.579 Sum_probs=38.6
Q ss_pred cccccccccccccc-CCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAG-DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
....|+||++.+.. ..+..++|||.||..|+..|+.. + ..||. |...+.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~----~~CP~--Cr~~~~ 62 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----N----KKCPI--CRVDIE 62 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----C----SBCTT--TCSBSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----C----CCCcC--cCcccc
Confidence 45789999998754 45567899999999999999875 1 36998 877654
No 34
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.17 E-value=8.7e-07 Score=66.93 Aligned_cols=52 Identities=29% Similarity=0.703 Sum_probs=39.7
Q ss_pred ccccccccccccccc-----CCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 114 SSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
.+...|+||++.+.. ..++.++|||.||..|+..|+... ..||. |...+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChh
Confidence 356889999998642 122677999999999999998742 48998 88776543
No 35
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.16 E-value=1.7e-06 Score=68.09 Aligned_cols=50 Identities=6% Similarity=0.016 Sum_probs=41.5
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
...+.|+||++.+ .+++.++|||.||+.|+..|+.. ...||. |+..+...
T Consensus 12 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGG
T ss_pred chheECcccCchh--cCCeECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChH
Confidence 3579999999986 68899999999999999999974 247998 77776654
No 36
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.15 E-value=6.8e-07 Score=77.17 Aligned_cols=46 Identities=30% Similarity=0.696 Sum_probs=37.6
Q ss_pred cccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 116 TVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
.++|+||++.+ .+++.++|||.||..|+..|+.. ...||. |...+.
T Consensus 53 ~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIK 98 (138)
T ss_dssp HSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCC
T ss_pred cCCCcccCccc--CCceECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCC
Confidence 46899999987 46788999999999999998752 257998 877653
No 37
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.15 E-value=1.1e-06 Score=64.85 Aligned_cols=51 Identities=25% Similarity=0.686 Sum_probs=39.3
Q ss_pred cccccccccccccc-----CCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 115 STVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 115 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
+...|+||++.+.. ..++.++|||.||..|+..|+.. ...||. |...+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCcc
Confidence 35789999998742 12367799999999999999875 248998 88876543
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.13 E-value=7.7e-07 Score=72.11 Aligned_cols=49 Identities=24% Similarity=0.649 Sum_probs=39.6
Q ss_pred ccccccccccccccCCceec-CCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
+.+.|+||++.+. +++.+ +|||.||..|+..|+.. ...||. |...+...
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCGG
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCChh
Confidence 4688999999873 56666 99999999999999863 258998 88877653
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.06 E-value=1.8e-06 Score=75.52 Aligned_cols=50 Identities=28% Similarity=0.614 Sum_probs=41.0
Q ss_pred ccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
..+.|+||++.+ .+++.++|||.||..|+..++.. ....||. |...+...
T Consensus 77 ~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhh--cCCEEcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 458899999986 56788999999999999999974 2368998 88776654
No 40
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.04 E-value=3.1e-06 Score=63.34 Aligned_cols=48 Identities=25% Similarity=0.609 Sum_probs=37.6
Q ss_pred ccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
....|+||++.+. +..+.++|||.||..|+..|+.. ...||. |...+.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQ--------NPTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHH--------SCSTTT--TCCCCC
T ss_pred CCCCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhC--------cCcCcC--CChhhH
Confidence 3568999999864 33477899999999999999853 148998 887664
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.03 E-value=1.9e-06 Score=70.96 Aligned_cols=47 Identities=26% Similarity=0.605 Sum_probs=38.4
Q ss_pred ccccccccccccccCCceec-CCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
..+.|+||++.+ .+++.+ +|||.||..|+..++.. ...||. |...+.
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLET--------SKYCPI--CDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTS--------CSBCTT--TCCBSC
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHh--------CCcCcC--CCcccc
Confidence 568999999987 457776 99999999999999864 268998 877654
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.03 E-value=1.1e-06 Score=63.21 Aligned_cols=44 Identities=23% Similarity=0.603 Sum_probs=35.2
Q ss_pred ccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
+.+.|+||++.+. +++.++|||.||..|+.. ....||. |...+.
T Consensus 5 ~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAK--CPKLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCB--CCSCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSS
T ss_pred cCCCceEeCCccC--CeEEcCCCCcccHHHHcc-----------CCCCCCc--CCcEee
Confidence 4578999999873 678889999999999876 2468998 776553
No 43
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.01 E-value=2.4e-06 Score=60.99 Aligned_cols=48 Identities=25% Similarity=0.619 Sum_probs=36.8
Q ss_pred cccccccccccccc-CCceecC-CCCccchhhHHHHHHHHHhcCCcccccCCCcccCCcc
Q 011726 115 STVMCDICMEEVAG-DKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (478)
Q Consensus 115 ~~~~C~IC~e~~~~-~~~~~l~-CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~ 172 (478)
+...|+||++.+.. ..+..++ |||.||..|+..|+.. ...||. |...+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEe
Confidence 45789999999754 3356675 9999999999999743 247998 77654
No 44
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.00 E-value=4.3e-06 Score=64.37 Aligned_cols=51 Identities=22% Similarity=0.500 Sum_probs=39.4
Q ss_pred cccccccccccccccC-CceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCH
Q 011726 114 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (478)
.....|+||++.+... .+..++|||.||..|+..|+.. ...||. |...+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--------HDSCPV--CRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--------TCSCTT--TCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--------CCcCcC--cCCccCC
Confidence 3568999999987543 3456799999999999999853 248998 8876654
No 45
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.00 E-value=2.8e-06 Score=79.93 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=44.0
Q ss_pred cccccccccccccccCCcee-cCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 114 SSTVMCDICMEEVAGDKATK-MDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
...+.||||++.+ .++++ ..|||.||+.|+..||.. .| ...||..||...+...
T Consensus 179 ~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~---~~---~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQG---YT---TRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTT---CS---CEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHh---CC---CCCCCcccccCcCchh
Confidence 4668999999987 56776 499999999999999873 12 3789999999877654
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=8.4e-06 Score=62.03 Aligned_cols=49 Identities=22% Similarity=0.529 Sum_probs=38.0
Q ss_pred ccccccccccccccC-CceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
....|+||++.+... ....++|||.||..|+..|+... ..||. |...+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 467899999997543 34456999999999999998751 37998 877653
No 47
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=5.4e-06 Score=63.37 Aligned_cols=50 Identities=22% Similarity=0.509 Sum_probs=38.8
Q ss_pred cccccccccccccccC-CceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 114 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
.+...|+||++.+... .+..++|||.||..|+..|+.. ...||. |...+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--------~~~CP~--Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA--------NRTCPI--CRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc--------CCcCcC--cCCcCC
Confidence 3567899999997543 3456799999999999999864 137998 877654
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.91 E-value=6.8e-06 Score=65.43 Aligned_cols=50 Identities=24% Similarity=0.529 Sum_probs=38.7
Q ss_pred cccccccccccccccC-CceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 114 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
.....|+||++.+... .+..++|||.||..|+..|+.. ...||. |...++
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--------SGTCPV--CRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--------TCBCTT--TCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--------CCcCcC--cCccCC
Confidence 3567899999987543 3556799999999999999853 238998 887664
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.90 E-value=4.4e-06 Score=67.77 Aligned_cols=49 Identities=6% Similarity=-0.020 Sum_probs=40.9
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCH
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (478)
...+.|+||++.+ .+++.++|||.||+.|+..||.. ...||. |+..+..
T Consensus 27 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCT
T ss_pred cHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCCh
Confidence 3579999999986 68899999999999999999863 257998 7777654
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.90 E-value=2.2e-06 Score=71.66 Aligned_cols=45 Identities=20% Similarity=0.572 Sum_probs=37.5
Q ss_pred ccccccccccccccCCceec-CCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
+.+.|+||++.+ .+++.+ +|||.||..|+..++. ..||. |...+.
T Consensus 21 ~~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCS
T ss_pred hCCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCc
Confidence 468899999987 467888 9999999999998864 57998 887664
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.89 E-value=8e-06 Score=67.77 Aligned_cols=53 Identities=25% Similarity=0.508 Sum_probs=37.7
Q ss_pred cccccccccccccC----------------CceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 116 TVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 116 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
...|+||++.+... ....++|+|.||..|+..|+...-.. ....||. |...+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~---~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD---GSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS---SCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC---CCCcCCC--CCCccC
Confidence 35899999997421 11256999999999999999542111 3468998 887654
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.89 E-value=6.1e-06 Score=66.67 Aligned_cols=50 Identities=4% Similarity=-0.097 Sum_probs=41.5
Q ss_pred cccccccccccccccCCceecCCC-CccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCG-HCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
...+.|+||++.+ .+++.++|| |.||+.|+..||.. ...||. |+..+...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChh
Confidence 4579999999986 688999999 99999999999974 247998 77777643
No 53
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.84 E-value=7.3e-06 Score=72.85 Aligned_cols=48 Identities=29% Similarity=0.714 Sum_probs=38.7
Q ss_pred ccccccccccccccCCceec-CCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
..+.|+||++.+. +++.+ +|||.||..|+..++.. + ...||. |...+.
T Consensus 53 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS----G---NKECPT--CRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT----T---CCBCTT--TCCBCC
T ss_pred CCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh----C---cCCCCC--CCCcCC
Confidence 5679999999874 56666 99999999999999873 2 368998 887664
No 54
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=3e-06 Score=63.84 Aligned_cols=45 Identities=27% Similarity=0.628 Sum_probs=35.7
Q ss_pred ccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCcc
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~ 172 (478)
....|+||++.+. . +.++|||.||..|+..|+. ....||. |...+
T Consensus 14 ~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~--------~~~~CP~--Cr~~~ 58 (70)
T 2ecn_A 14 DEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSD--------RHRNCPI--CRLQM 58 (70)
T ss_dssp CCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSC--------CCSSCHH--HHHCT
T ss_pred CCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHH--------CcCcCCC--cCCcc
Confidence 4678999999874 3 7789999999999999875 1368987 76544
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.79 E-value=1.3e-05 Score=77.20 Aligned_cols=51 Identities=12% Similarity=0.047 Sum_probs=41.6
Q ss_pred cccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
...+.|+||++.+ .+|+.++|||+||+.|+..|+.. .+ ..||. |+..++..
T Consensus 206 ~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~---~~----~~cP~--~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQR---VG----HFNPV--TRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHH---TC----SSCTT--TCCCCCGG
T ss_pred CcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHH---CC----CCCcC--CCCCCchh
Confidence 3578999999986 68899999999999999999974 12 24998 88877654
No 56
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.69 E-value=2.3e-05 Score=70.13 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=41.4
Q ss_pred ccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
..+.||||++.+ .+|+.++|||.||+.|+..|+.. .|. .||. |+..+...
T Consensus 105 ~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~---~~~----tcP~--t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELM--REPCITPSGITYDRKDIEEHLQR---VGH----FDPV--TRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH---TCS----BCTT--TCCBCCGG
T ss_pred HhhcccCccccC--CCCeECCCCCEECHHHHHHHHHh---CCC----CCCC--CcCCCChh
Confidence 579999999986 68899999999999999999975 222 6998 77777654
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.68 E-value=1.1e-05 Score=61.51 Aligned_cols=43 Identities=26% Similarity=0.666 Sum_probs=34.8
Q ss_pred ccccccccccccccCCceecCCCCc-cchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
+...|+||++.+ .+++.++|||. ||..|+..+ ..||. |...+.
T Consensus 23 ~~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV------------DKCPM--CYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC------------SBCTT--TCCBCS
T ss_pred cCCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC------------ccCCC--cCcCcc
Confidence 457899999985 56788899999 999998764 57998 877654
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=2.4e-05 Score=59.72 Aligned_cols=43 Identities=26% Similarity=0.666 Sum_probs=34.1
Q ss_pred ccccccccccccccCCceecCCCCc-cchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
+...|+||++.+ .+++.++|||. ||..|+.. ...||. |...+.
T Consensus 24 ~~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRN--IAIVFVPCGHLVTCKQCAEA------------VDKCPM--CYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSC--CCBCCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCC
T ss_pred CCCCCCcCCCCC--CCEEEecCCCHHHHHHHhhC------------CCCCcc--CCceec
Confidence 457899999985 56778899999 99999842 258998 887654
No 59
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.55 E-value=2.4e-05 Score=61.54 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=39.1
Q ss_pred CcCCCCCCCCccccCCCCceEe-ccccceeccccccccCCCCccccCCCcCCCCc
Q 011726 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDHTWSRIAGHSCGRYK 329 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~~~H~~~~~~~~~C~~~~ 329 (478)
.+-||.|+..+...++-..++| .|++.||+.|+.+|...| .+..|..|+
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H-----~~~sC~~~~ 74 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH-----RGRSCEDFQ 74 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT-----TTSCHHHHH
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC-----CCCChHHHH
Confidence 3569999999988888888999 599999999999985444 445676543
No 60
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=4.9e-05 Score=58.95 Aligned_cols=48 Identities=27% Similarity=0.485 Sum_probs=34.0
Q ss_pred ccccccccccccc------------CCceec-CCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 116 TVMCDICMEEVAG------------DKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 116 ~~~C~IC~e~~~~------------~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
..+|+||++.+.. +.+..+ +|||.||..|+..++... -.||. |...+.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcc
Confidence 4567777776632 224455 699999999999998641 38998 887654
No 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.0002 Score=55.33 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=40.4
Q ss_pred ccccccccccccccCCceecCCC-----CccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKMDCG-----HCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
....|.||++++..++...++|+ |.|+..|+..|+... + ...||. |...+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~---~~~Cpl--Cr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D---TRCCEL--CKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C---CSBCSS--SCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C---CCCCCC--CCCeee
Confidence 45789999998865556667896 999999999999863 2 368999 887654
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.36 E-value=9e-05 Score=54.68 Aligned_cols=48 Identities=19% Similarity=0.357 Sum_probs=36.2
Q ss_pred cccccccccccccccCCceec--CCCCc-cchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 114 SSTVMCDICMEEVAGDKATKM--DCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
.....|.||++.. .+++.+ +|||. ||..|...++.. .-.||. |...+.
T Consensus 6 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred CCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 4567899999975 345554 99999 899999988752 247998 887653
No 63
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.34 E-value=0.00012 Score=73.11 Aligned_cols=47 Identities=26% Similarity=0.564 Sum_probs=38.0
Q ss_pred ccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCH
Q 011726 117 VMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (478)
Q Consensus 117 ~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (478)
..|+||++.+ .+++.++|||.||..|+..++.. + ...||. |...+..
T Consensus 333 ~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~----~---~~~CP~--CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES----E---GQGCPF--CRCEIKG 379 (389)
T ss_dssp SBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH----T---CSBCTT--TCCBCCE
T ss_pred CCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc----C---CCCCCC--CCCccCC
Confidence 6899999986 56788899999999999998863 1 358998 8876543
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00024 Score=53.07 Aligned_cols=44 Identities=18% Similarity=0.538 Sum_probs=34.8
Q ss_pred cccccccccccccccCCceecCCCCc-cchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 114 SSTVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
.....|.||++.. .+++.++|||. ||..|... ...||. |...+.
T Consensus 13 ~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~------------~~~CP~--CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKY------------FQQCPM--CRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHH------------CSSCTT--TCCCCC
T ss_pred CCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhc------------CCCCCC--CCcchh
Confidence 3467899999975 46788899999 99999983 147998 887654
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.27 E-value=6e-05 Score=58.19 Aligned_cols=43 Identities=28% Similarity=0.720 Sum_probs=34.3
Q ss_pred cccccccccccccCCceecCCCCc-cchhhHHHHHHHHHhcCCcccccCCCcccCCccCH
Q 011726 116 TVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (478)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (478)
...|+||++.. .+++.++|||. ||..|+..+ ..||. |...+..
T Consensus 18 ~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--INSTFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCEeEEeCccc--CcEEEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 46899999975 56788899999 999998743 28998 8876643
No 66
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.23 E-value=0.00015 Score=53.32 Aligned_cols=47 Identities=19% Similarity=0.419 Sum_probs=35.0
Q ss_pred ccccccccccccccCCceec--CCCCc-cchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKM--DCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
....|.||++.. .+.+.+ +|||. ||..|...++.. + -.||. |...+.
T Consensus 6 ~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~----~----~~CPi--CR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKKA----G----ASCPI--CKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHHT----T----CBCTT--TCCBCC
T ss_pred cCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHHh----C----CcCCC--cCchhh
Confidence 457899999975 334444 99998 999999987642 1 47998 887653
No 67
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.22 E-value=0.0001 Score=62.45 Aligned_cols=54 Identities=28% Similarity=0.637 Sum_probs=41.2
Q ss_pred cccccccccccccccc-----CCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHHH
Q 011726 113 LSSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (478)
Q Consensus 113 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~~ 176 (478)
......|+||++.+.. ...+.++|||.||..|+..|+.. ...||. |...+....
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--------CCCCCC--CCCcCChhc
Confidence 3456889999998742 12367799999999999999864 248998 888776553
No 68
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.20 E-value=0.00016 Score=55.85 Aligned_cols=37 Identities=32% Similarity=0.640 Sum_probs=34.0
Q ss_pred CcCCCC--CCCCccccCCCCceEe------ccccceecccccccc
Q 011726 276 TKPCPK--CHKPVEKNGGCNLVSC------ICGQAFCWLCGGATG 312 (478)
Q Consensus 276 ~k~CP~--C~~~IeK~~GCnhm~C------~C~~~FCw~C~~~~~ 312 (478)
.+-||. |+..|...++...++| .||+.||+.|+..||
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 588998 9999998889999999 699999999999974
No 69
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.12 E-value=0.00028 Score=57.62 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=36.1
Q ss_pred ccccccccccccccC----------------CceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCcc
Q 011726 115 STVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~ 172 (478)
...+|+||++.+... .+..++|+|.|+..|+..|+.. ...||. |...+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCcc
Confidence 346799999887532 1344699999999999999864 257998 87754
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.63 E-value=0.00049 Score=68.18 Aligned_cols=43 Identities=26% Similarity=0.732 Sum_probs=35.0
Q ss_pred ccccccccccccccCCceecCCCCc-cchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
+...|+||++.+ .+++.++|||. ||..|+..+ ..||. |...+.
T Consensus 294 ~~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL------------RKCPI--CRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC------------SBCTT--TCCBCC
T ss_pred CCCCCCccCCcC--CceEEcCCCChhHhHHHHhcC------------CcCCC--CCCCcc
Confidence 457899999986 57788899999 999998754 47998 877654
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.59 E-value=0.0015 Score=63.59 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=42.4
Q ss_pred ccccccccccccccc-CCce-----ecCCCCccchhhHHHHHHHHHhcCCcccc---cCCCcccCCccCHH
Q 011726 114 SSTVMCDICMEEVAG-DKAT-----KMDCGHCFCNDCWTEHFIVKINEGQSKRI---RCMAHKCNAICDEA 175 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~C~~~yi~~~i~~g~~~~i---~CP~~~C~~~~~~~ 175 (478)
....+|+||++.+.. ..+. ...|||.|...|+..|+.+.-....++.+ .||. |...++.+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCcc
Confidence 356789999998653 2221 34799999999999999986543333222 6998 98877643
No 72
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.47 E-value=0.00045 Score=57.34 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=0.4
Q ss_pred cccccccccccccC----------------CceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 116 TVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 116 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
..+|+||++.+... .++.++|+|.|+..|+..|+.. .-.||. |...+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--------~~~CP~--Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWE 111 (117)
T ss_dssp C-------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--------CCcCCC--CCCeee
Confidence 46899999997421 1123589999999999999875 147998 876543
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=95.74 E-value=0.0048 Score=44.78 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=36.2
Q ss_pred cccccccccccccCCceec-CCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCH
Q 011726 116 TVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (478)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (478)
.+.|+|+++.+ .+++.+ ++||.|++.|+..|+.. +| +||. .+..+..
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~---~~-----~cP~--t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKD---TG-----NDPI--TNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHH---HS-----BCTT--TCCBCCG
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHh---CC-----CCcC--CcCCCCh
Confidence 47899999986 577887 99999999999999974 22 3888 4455543
No 74
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.54 E-value=0.0068 Score=45.78 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=36.8
Q ss_pred ccccccccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
....|.||++.+.... .-..|+|.|...|+..||... + .-.||. |...+.
T Consensus 14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~---~---~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSN---A---EPRCPH--CNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTC---S---SCCCTT--TCSCCC
T ss_pred CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhc---C---CCCCCC--CcCcCC
Confidence 4568999999985332 223899999999999999742 1 257998 876553
No 75
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=94.86 E-value=0.075 Score=35.84 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 011726 51 QKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (478)
Q Consensus 51 ~~~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~~ 90 (478)
+++.|..-..+.|.++..|+.+|...+||.+.-+..||+.
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4567888899999999999999999999999999999963
No 76
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=93.92 E-value=0.039 Score=43.61 Aligned_cols=44 Identities=27% Similarity=0.563 Sum_probs=28.8
Q ss_pred cccccccccccCCce-ecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCcc
Q 011726 118 MCDICMEEVAGDKAT-KMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (478)
Q Consensus 118 ~C~IC~e~~~~~~~~-~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~ 172 (478)
-|++|--++ .... .++|.|.||.+|...+.... .-.||. |...+
T Consensus 3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~~-------~k~Cp~--C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKKG-------DKMCPG--CSDPV 47 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHTT-------CCBCTT--TCCBC
T ss_pred ecCccCCCe--EEEeeeccccccHHHHHHHHHHhcc-------CCCCcC--cCCee
Confidence 377775443 3333 45999999999999887542 125666 66544
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.72 E-value=0.24 Score=37.17 Aligned_cols=67 Identities=22% Similarity=0.438 Sum_probs=46.6
Q ss_pred ccccccccccccccccCCceecC--CCCccchhhHHHHHHHHHhcCCcccccCCCc-ccCC-------ccCHHHHHHHhc
Q 011726 113 LSSTVMCDICMEEVAGDKATKMD--CGHCFCNDCWTEHFIVKINEGQSKRIRCMAH-KCNA-------ICDEAVVRNLVS 182 (478)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~-~C~~-------~~~~~~i~~ll~ 182 (478)
......|.+|-+-+..+.++..+ =.|.||..|-+.+|+.+-..+ .+.||.. +|.. .+....|..+|.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~---EvyCPSG~kCpL~gS~~PWAFmqgEIatILg 88 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG---EVYCPSGEKCPLVGSNVPWAFMQGEIATILS 88 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS---CCCCTTSSCCBCSSSSSBCCCCHHHHHHHHS
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC---cEECCCCCccccCCCcCchHHHhhHHHHHhc
Confidence 34578999999988656666543 369999999999999875443 4777753 4553 234456666665
No 78
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.37 E-value=0.21 Score=36.15 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 011726 50 AQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (478)
Q Consensus 50 ~~~~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~~ 90 (478)
.+++.|..-+.+.+.++..|+.+|...+||.+.-+..||+.
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45667888999999999999999999999999999999964
No 79
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.72 E-value=0.047 Score=43.61 Aligned_cols=32 Identities=28% Similarity=0.861 Sum_probs=24.5
Q ss_pred cccccccccccccCCcee--cCCCCccchhhHHHH
Q 011726 116 TVMCDICMEEVAGDKATK--MDCGHCFCNDCWTEH 148 (478)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~--l~CgH~fC~~C~~~y 148 (478)
...|+||.+.+. ...+. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSC-CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCC-CCceEECCcCChHHhHHHCHHH
Confidence 578999997642 23333 899999999999973
No 80
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=92.63 E-value=0.16 Score=36.42 Aligned_cols=49 Identities=20% Similarity=0.544 Sum_probs=35.2
Q ss_pred ccccccccccccccCCceecCCC--C---ccchhhHHHHHHHHHhcCCcccccCCCcccCCccC
Q 011726 115 STVMCDICMEEVAGDKATKMDCG--H---CFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~Cg--H---~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~ 173 (478)
+...|.||+++.. +...+||. | .|..+|+..|+..+ + ...||. |+..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~---~---~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTIS---R---NTACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHH---T---CSBCTT--TCCBCC
T ss_pred CCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhC---C---CCccCC--CCCeee
Confidence 4568999999742 33346654 4 89999999999753 2 368998 877553
No 81
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.35 E-value=0.048 Score=39.25 Aligned_cols=37 Identities=32% Similarity=0.746 Sum_probs=29.6
Q ss_pred CcccCCCCCCCCceEEeccccceeeEec---CCccccccccCCC
Q 011726 206 MVKWCPSTPHCGNAIRVEEVEVCEVECA---CGAQFCFSCLSEA 246 (478)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~---C~~~fC~~C~~~~ 246 (478)
+.+.|| .|+..|...+. -..++|. |++.||+.|+.+|
T Consensus 5 ~~k~CP---~C~~~Iek~~G-CnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP---KCHVTIEKDGG-CNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT---TTCCCCSSCCS-CCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc---CCCCeeEeCCC-CCcEEECCCCcCCEEeeCcCCCc
Confidence 457898 79999886553 3458996 9999999999876
No 82
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.15 E-value=0.3 Score=38.94 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=41.7
Q ss_pred CHHHHHHHH----------HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 011726 43 TRESLLAAQ----------KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (478)
Q Consensus 43 ~~~~i~~~~----------~~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~~ 90 (478)
|.++|+-.+ .++|..|+++.|++.+.|+..|...+|+++..++.+++.
T Consensus 21 TaeQ~rLAq~i~~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 21 TAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp SHHHHHHHHHHHHSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhcCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 566666433 578999999999999999999999999999999999964
No 83
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.13 E-value=0.52 Score=34.57 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHcCCChHHHHHHHHhc
Q 011726 51 QKEDLRRVMELLS-LREHHARTLLIHYRWDVEKLLAVLVEN 90 (478)
Q Consensus 51 ~~~~i~~v~~~l~-i~~~~a~~lL~~~~W~~e~l~e~~~~~ 90 (478)
+.+.|..-+.|.| -.+..|+.+|..++||.+..+..||+.
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4567889999999 888999999999999999999999963
No 84
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=90.92 E-value=0.67 Score=34.21 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 011726 50 AQKEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVEN 90 (478)
Q Consensus 50 ~~~~~i~~v~~~l-~i~~~~a~~lL~~~~W~~e~l~e~~~~~ 90 (478)
++...|+.|.++| .+..+.+..+|.+|+-|+|.+++.+++.
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4567899999999 7999999999999999999999999973
No 85
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.51 E-value=0.042 Score=43.90 Aligned_cols=74 Identities=24% Similarity=0.437 Sum_probs=45.2
Q ss_pred eeeEec-CCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCC-CCCccccCCCCceEe-cccccee
Q 011726 228 CEVECA-CGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKC-HKPVEKNGGCNLVSC-ICGQAFC 304 (478)
Q Consensus 228 ~~v~C~-C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C-~~~IeK~~GCnhm~C-~C~~~FC 304 (478)
+...|. |++.||..|...+|....-...+.......+ . ......|+.+ +.++. ++| .|+...|
T Consensus 17 av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~-~------~~~~~~C~~H~~e~l~-------~fC~~~~~~iC 82 (101)
T 2jun_A 17 AVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPD-S------HIRGLMCLEHEDEKVN-------MYCVTDDQLIC 82 (101)
T ss_dssp CCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCS-C------CSSCCCCSSCSSSCCC-------EEETTTTEEEC
T ss_pred ceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccc-c------CccCCcCcCcCCCcce-------EECCCCCCccc
Confidence 346896 9999999999876763211111110000000 0 0123579999 47788 999 5999999
Q ss_pred ccccc-cccCCC
Q 011726 305 WLCGG-ATGRDH 315 (478)
Q Consensus 305 w~C~~-~~~~~H 315 (478)
+.|.. .-+.+|
T Consensus 83 ~~C~~~~~H~~H 94 (101)
T 2jun_A 83 ALCKLVGRHRDH 94 (101)
T ss_dssp HHHHHHTTTSSS
T ss_pred hhcCCCCCcCCC
Confidence 99985 433444
No 86
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=89.25 E-value=0.68 Score=29.82 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHH
Q 011726 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVL 87 (478)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~ 87 (478)
.+.|++++++ |++...|+..|+..+||.+.-++.+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568888887 9999999999999999999877654
No 87
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=88.97 E-value=0.14 Score=37.06 Aligned_cols=32 Identities=31% Similarity=0.800 Sum_probs=23.1
Q ss_pred cCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCcccc
Q 011726 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKN 289 (478)
Q Consensus 233 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~ 289 (478)
+||+.||..|... |. ..+...||.|+.++.++
T Consensus 25 ~CgH~fC~~Ci~~------------~~-------------~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 25 VCGHTLCESCVDL------------LF-------------VRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCCEEHHHHHH------------HH-------------HTTSSSCTTTCCCCSSC
T ss_pred CCCCHhHHHHHHH------------HH-------------HcCCCcCCCCCCccccc
Confidence 6999999998642 21 11236899999998753
No 88
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=88.16 E-value=0.24 Score=39.18 Aligned_cols=46 Identities=33% Similarity=0.827 Sum_probs=32.2
Q ss_pred cCCCCCCCCceEEeccccceeeEe-cCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCcc
Q 011726 209 WCPSTPHCGNAIRVEEVEVCEVEC-ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (478)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 287 (478)
.|| .|+..|..-+ .- ||++.||..|-.. |.....+.||.|+.+|.
T Consensus 3 fC~---~C~~Pi~iyg------RmIPCkHvFCydCa~~-------------------------~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCD---KCGLPIKVYG------RMIPCKHVFCYDCAIL-------------------------HEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCT---TTCSBCSEEE------EEETTCCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCS
T ss_pred ecC---ccCCCeEEEe------eeccccccHHHHHHHH-------------------------HHhccCCCCcCcCCeee
Confidence 576 6887765432 22 6999999998542 22234489999999999
Q ss_pred c
Q 011726 288 K 288 (478)
Q Consensus 288 K 288 (478)
+
T Consensus 49 r 49 (101)
T 3vk6_A 49 R 49 (101)
T ss_dssp E
T ss_pred e
Confidence 5
No 89
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.25 E-value=1.2 Score=32.46 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
+.|..-..+.|.++..|+..|...+||.+.-+..||+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3578888999999999999999999999999999996
No 90
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=86.46 E-value=0.57 Score=31.40 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHcCCChHHHHHHHH
Q 011726 51 QKEDLRRVMELLSLRE-HHARTLLIHYRWDVEKLLAVLV 88 (478)
Q Consensus 51 ~~~~i~~v~~~l~i~~-~~a~~lL~~~~W~~e~l~e~~~ 88 (478)
..+.|..-.++.|+++ +.|+..|-..+||.+.-+..|+
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 3456777888999995 9999999999999988766554
No 91
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=85.85 E-value=0.2 Score=42.36 Aligned_cols=27 Identities=26% Similarity=0.643 Sum_probs=19.0
Q ss_pred cCCCCCCCCceEEeccccceeeEecCCccccccccC
Q 011726 209 WCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 244 (478)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~ 244 (478)
.|| -|...+. ..+.-+|||.||..|..
T Consensus 55 ~C~---iC~~~~~------~~~~~~CgH~fc~~Ci~ 81 (138)
T 4ayc_A 55 QCI---ICSEYFI------EAVTLNCAHSFCSYCIN 81 (138)
T ss_dssp BCT---TTCSBCS------SEEEETTSCEEEHHHHH
T ss_pred CCc---ccCcccC------CceECCCCCCccHHHHH
Confidence 588 5865442 12556899999999964
No 92
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.14 E-value=0.28 Score=35.47 Aligned_cols=49 Identities=22% Similarity=0.608 Sum_probs=31.4
Q ss_pred cccCCCCCCCCceEEeccccceeeEecCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCc
Q 011726 207 VKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPV 286 (478)
Q Consensus 207 ~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~I 286 (478)
...|| -|...+.. + +.-+||+.||..|... |. ......||.|+..+
T Consensus 15 ~~~C~---IC~~~~~~-----p-~~~~CgH~fC~~Ci~~------------~~-------------~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 15 KYKCE---KCHLVLCS-----P-KQTECGHRFCESCMAA------------LL-------------SSSSPKCTACQESI 60 (66)
T ss_dssp CEECT---TTCCEESS-----C-CCCSSSCCCCHHHHHH------------HH-------------TTSSCCCTTTCCCC
T ss_pred CCCCC---CCChHhcC-----e-eECCCCCHHHHHHHHH------------HH-------------HhCcCCCCCCCcCC
Confidence 34687 58665431 1 2236999999998653 22 12336899999998
Q ss_pred ccc
Q 011726 287 EKN 289 (478)
Q Consensus 287 eK~ 289 (478)
..+
T Consensus 61 ~~~ 63 (66)
T 2ecy_A 61 VKD 63 (66)
T ss_dssp CTT
T ss_pred Chh
Confidence 753
No 93
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=84.88 E-value=0.31 Score=36.46 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=29.8
Q ss_pred ccCCCCCCCCceEEeccccceeeEecCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCcc
Q 011726 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (478)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 287 (478)
..|| -|...+. . .+.-+||+.||..|... | +..+...||.|+.++.
T Consensus 9 ~~C~---IC~~~~~-----~-Pv~~~CgH~fc~~Ci~~------------~-------------~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 9 FRCP---ISLELMK-----D-PVIVSTGQTYERSSIQK------------W-------------LDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSCT---TTSCCCS-----S-EEEETTTEEEEHHHHHH------------H-------------HTTTCCBCTTTCCBCS
T ss_pred CCCC---Ccccccc-----C-CEEcCCCCeecHHHHHH------------H-------------HHHCcCCCCCCcCCCC
Confidence 4687 5765543 1 14457999999998653 2 2122368999988775
No 94
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=84.37 E-value=0.37 Score=41.94 Aligned_cols=45 Identities=27% Similarity=0.735 Sum_probs=30.1
Q ss_pred cCCCCCCCCceEEeccccceeeEe-cCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCcc
Q 011726 209 WCPSTPHCGNAIRVEEVEVCEVEC-ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (478)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 287 (478)
.|| -|...+.. .+.. +||+.||..|... | +......||.|+.++.
T Consensus 56 ~C~---IC~~~~~~------p~~~~~CgH~fC~~Ci~~------------~-------------~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 56 MCP---ICLDMLKN------TMTTKECLHRFCADCIIT------------A-------------LRSGNKECPTCRKKLV 101 (165)
T ss_dssp BCT---TTSSBCSS------EEEETTTCCEEEHHHHHH------------H-------------HHTTCCBCTTTCCBCC
T ss_pred CCc---ccChHhhC------cCEeCCCCChhHHHHHHH------------H-------------HHhCcCCCCCCCCcCC
Confidence 688 58655431 2566 7999999999642 2 2222368999998875
No 95
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=84.24 E-value=0.37 Score=39.75 Aligned_cols=47 Identities=19% Similarity=0.564 Sum_probs=30.7
Q ss_pred ccCCCCCCCCceEEeccccceeeEecCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCcc
Q 011726 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (478)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 287 (478)
..|| -|...+. . .++-+|||.||..|...| +..+...||.|+.++.
T Consensus 53 ~~C~---IC~~~~~-----~-p~~~~CgH~fC~~Ci~~~-------------------------~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCI---CCQELVF-----R-PITTVCQHNVCKDCLDRS-------------------------FRAQVFSCPACRYDLG 98 (124)
T ss_dssp TBCT---TTSSBCS-----S-EEECTTSCEEEHHHHHHH-------------------------HHTTCCBCTTTCCBCC
T ss_pred CCCC---cCChHHc-----C-cEEeeCCCcccHHHHHHH-------------------------HhHCcCCCCCCCccCC
Confidence 3688 6865543 1 134479999999997532 1123358999998886
Q ss_pred c
Q 011726 288 K 288 (478)
Q Consensus 288 K 288 (478)
.
T Consensus 99 ~ 99 (124)
T 3fl2_A 99 R 99 (124)
T ss_dssp T
T ss_pred C
Confidence 3
No 96
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.89 E-value=0.42 Score=35.47 Aligned_cols=33 Identities=27% Similarity=0.862 Sum_probs=24.6
Q ss_pred cCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCccccCC
Q 011726 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGG 291 (478)
Q Consensus 233 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~G 291 (478)
+|++.||..|... |.. .+ ..||.|+..+....|
T Consensus 43 ~C~H~fh~~Ci~~------------w~~-------------~~-~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 43 PCNHEFHAKCVDK------------WLK-------------AN-RTCPICRADSGPSSG 75 (75)
T ss_dssp TTTEEEETTHHHH------------HHH-------------HC-SSCTTTCCCCCCCCC
T ss_pred CCCCHhHHHHHHH------------HHH-------------cC-CcCcCcCCcCCCCCC
Confidence 6999999998653 322 12 589999999987665
No 97
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=83.74 E-value=2.6 Score=28.64 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.+.|+.+.++ |.+...|+..|+..+||+++.++.++.
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456666655 899999999999999999999998884
No 98
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=83.73 E-value=0.43 Score=33.52 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=20.2
Q ss_pred CCcCCCCCCCCccccCCCCceEe-ccccce
Q 011726 275 HTKPCPKCHKPVEKNGGCNLVSC-ICGQAF 303 (478)
Q Consensus 275 ~~k~CP~C~~~IeK~~GCnhm~C-~C~~~F 303 (478)
..+.||+|+..+--...-+.++| +||+.+
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 34899999985442233468999 699874
No 99
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=82.70 E-value=0.32 Score=38.57 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=25.1
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~ 311 (478)
-.||-|...+. +-++| .|||.||+.|...|
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~ 53 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRW 53 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHH
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHH
Confidence 58999998876 34777 69999999999986
No 100
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=82.65 E-value=0.7 Score=35.08 Aligned_cols=33 Identities=36% Similarity=0.917 Sum_probs=23.5
Q ss_pred cCCCCCCCCccccCCCCceEe-cccc-----ceeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQ-----AFCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~-----~FCw~C~~~~ 311 (478)
..||.|+.+|+.++| +..| .|+. -||-.|+.+.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHH
Confidence 478888888888777 5557 4763 3677777764
No 101
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.39 E-value=0.91 Score=31.63 Aligned_cols=27 Identities=30% Similarity=0.784 Sum_probs=21.7
Q ss_pred cCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCccc
Q 011726 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (478)
Q Consensus 233 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 288 (478)
+||+.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 59999999997641 2689999998864
No 102
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=81.05 E-value=0.79 Score=31.31 Aligned_cols=29 Identities=24% Similarity=0.614 Sum_probs=21.4
Q ss_pred CCcCCCCCCC-CccccCCCCceEe-ccccce
Q 011726 275 HTKPCPKCHK-PVEKNGGCNLVSC-ICGQAF 303 (478)
Q Consensus 275 ~~k~CP~C~~-~IeK~~GCnhm~C-~C~~~F 303 (478)
+...||.|+. .+.-+..=..+.| .||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3468999998 7776666667888 487755
No 103
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.53 E-value=1 Score=36.61 Aligned_cols=30 Identities=33% Similarity=0.749 Sum_probs=20.4
Q ss_pred ccCCCCCCCCceEEeccccceeeEe-cCCccccccccCCC
Q 011726 208 KWCPSTPHCGNAIRVEEVEVCEVEC-ACGAQFCFSCLSEA 246 (478)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C-~C~~~fC~~C~~~~ 246 (478)
..|| -|...+. .+ +.- +||+.||..|...|
T Consensus 23 ~~C~---IC~~~~~-----~p-v~~~~CgH~fC~~Ci~~~ 53 (117)
T 1jm7_B 23 LRCS---RCTNILR-----EP-VCLGGCEHIFCSNCVSDC 53 (117)
T ss_dssp TSCS---SSCSCCS-----SC-BCCCSSSCCBCTTTGGGG
T ss_pred CCCC---CCChHhh-----Cc-cEeCCCCCHHHHHHHHHH
Confidence 3788 5865543 12 333 79999999998754
No 104
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=80.29 E-value=1 Score=32.50 Aligned_cols=29 Identities=34% Similarity=0.787 Sum_probs=23.3
Q ss_pred CcCCCCCCCCccccCCCCceEeccccceecccc
Q 011726 276 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCG 308 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~ 308 (478)
..+|..|+..+... | +.|+||..||-.-.
T Consensus 15 ~~rC~~C~kkvgl~-~---f~CrCg~~FC~~HR 43 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT-G---FMCRCGTTFCGSHR 43 (64)
T ss_dssp CCCCTTTCCCCCTT-C---EECSSSCEECTTTC
T ss_pred CCcChhhCCccCcc-C---EEeecCCEeccccC
Confidence 47899999987755 3 88999999997543
No 105
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=80.28 E-value=0.79 Score=42.60 Aligned_cols=49 Identities=22% Similarity=0.494 Sum_probs=36.7
Q ss_pred cccccccccccccCCceec-CCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCH
Q 011726 116 TVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (478)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~ 174 (478)
...|.||.+.+... ... .|+|.|...|+..|+... ....||. |+..++.
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~------~~~~CP~--C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN------AEPRCPH--CNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTC------SSCBCTT--TCCBCCS
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhC------CCCCCCC--CCCCCCC
Confidence 56899999987532 333 599999999999998641 2368997 8876654
No 106
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=79.67 E-value=3.3 Score=27.07 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
+.|+++.+ +|++...|...|+..+||.+..++.++.
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 45677776 5999999999999999999998888773
No 107
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.66 E-value=0.48 Score=33.79 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=24.7
Q ss_pred cCCCCCCCCccccCCCCceEeccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
-.||-|...+.. -++-.|||.||+.|...|-
T Consensus 21 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CBCTTTCSBCSS-----CEECTTSSEECHHHHHHHH
T ss_pred CCCCcCCchhCC-----eEEeCCCCcchHHHHHHHH
Confidence 589999887763 3444899999999999874
No 108
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=79.42 E-value=0.62 Score=38.06 Aligned_cols=29 Identities=38% Similarity=0.853 Sum_probs=19.8
Q ss_pred cccCCCCCCCCceEEeccccceeeEecCCccccccccC
Q 011726 207 VKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 244 (478)
Q Consensus 207 ~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~ 244 (478)
...|| -|...+.. .+..+||+.||..|..
T Consensus 18 ~~~C~---IC~~~~~~------p~~~~CgH~fC~~Ci~ 46 (118)
T 3hct_A 18 KYECP---ICLMALRE------AVQTPCGHRFCKACII 46 (118)
T ss_dssp GGBCT---TTCSBCSS------EEECTTSCEEEHHHHH
T ss_pred CCCCC---cCChhhcC------eEECCcCChhhHHHHH
Confidence 34787 68655431 1455799999999865
No 109
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.34 E-value=0.55 Score=32.26 Aligned_cols=28 Identities=32% Similarity=0.687 Sum_probs=18.7
Q ss_pred CCcCCCCCCCCcc-ccCCCCceEe-ccccce
Q 011726 275 HTKPCPKCHKPVE-KNGGCNLVSC-ICGQAF 303 (478)
Q Consensus 275 ~~k~CP~C~~~Ie-K~~GCnhm~C-~C~~~F 303 (478)
..+.||+|+..+. .+.+ +.+.| +||+.+
T Consensus 18 ~~k~CP~CG~~~fm~~~~-~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHG-DRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECS-SEEECSSSCCEE
T ss_pred ecccCCCCCCceEEecCC-CeEECCCCCCEE
Confidence 3488999998543 2333 67888 688653
No 110
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=78.85 E-value=1.1 Score=32.40 Aligned_cols=33 Identities=30% Similarity=0.725 Sum_probs=25.7
Q ss_pred cccccccccccccccCCceecCC-CCccchhhHHHHH
Q 011726 114 SSTVMCDICMEEVAGDKATKMDC-GHCFCNDCWTEHF 149 (478)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yi 149 (478)
.+..-|.||.++- .+.-+.| |-.||..||+..=
T Consensus 6 ee~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDA---TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCC---CEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCC---eEEecCCCCceehHHHHHHHc
Confidence 3456899999872 3455689 7899999999875
No 111
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=78.75 E-value=1.2 Score=32.09 Aligned_cols=29 Identities=34% Similarity=0.775 Sum_probs=22.9
Q ss_pred CcCCCCCCCCccccCCCCceEeccccceecccc
Q 011726 276 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCG 308 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~ 308 (478)
..+|..|+..+... | +.|+||..||-.-.
T Consensus 15 ~~rC~~C~kkvgl~-~---f~CrCg~~FC~~HR 43 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM-G---FKCKCGSTFCGSHR 43 (64)
T ss_dssp SCSCTTTCCCCTTS-C---EECTTSCEECSSSC
T ss_pred CCcChhhCCccccc-C---eEeecCCEecccCC
Confidence 46899999987754 3 78999999997543
No 112
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=78.40 E-value=0.63 Score=35.66 Aligned_cols=36 Identities=25% Similarity=0.665 Sum_probs=29.1
Q ss_pred CCcCCCCCCCCccccCCCCceEe-ccccceeccccccccC
Q 011726 275 HTKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGR 313 (478)
Q Consensus 275 ~~k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~~ 313 (478)
....||.|+....+..+-..+.| .|++.|- ++.|.+
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a---ggay~~ 62 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFT---GGSYKP 62 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEE---CCSSSS
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEec---CCEecc
Confidence 35799999999999888889999 5999874 666643
No 113
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=77.75 E-value=0.73 Score=40.24 Aligned_cols=31 Identities=35% Similarity=0.822 Sum_probs=22.1
Q ss_pred cccCCCCCCCCceEEeccccceeeEecCCccccccccCCC
Q 011726 207 VKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEA 246 (478)
Q Consensus 207 ~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~ 246 (478)
...|| -|...+.. .+.++||+.||..|...|
T Consensus 18 ~~~C~---IC~~~~~~------pv~~~CgH~fC~~Ci~~~ 48 (170)
T 3hcs_A 18 KYECP---ICLMALRE------AVQTPCGHRFCKACIIKS 48 (170)
T ss_dssp GGBCT---TTCSBCSS------EEECTTSCEEEHHHHHHH
T ss_pred CCCCC---CCChhhcC------cEECCCCCHHHHHHHHHH
Confidence 34787 68765431 266789999999998654
No 114
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=77.24 E-value=0.87 Score=39.06 Aligned_cols=47 Identities=21% Similarity=0.546 Sum_probs=30.2
Q ss_pred ccCCCCCCCCceEEeccccceeeEecCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCcc
Q 011726 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (478)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 287 (478)
..|| -|...+. . .++-+||+.||..|... | +......||.|+..+.
T Consensus 79 ~~C~---IC~~~~~-----~-pv~~~CgH~fC~~Ci~~------------~-------------~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCV---CCQELVY-----Q-PVTTECFHNVCKDCLQR------------S-------------FKAQVFSCPACRHDLG 124 (150)
T ss_dssp TBCT---TTSSBCS-----S-EEECTTSCEEEHHHHHH------------H-------------HHTTCCBCTTTCCBCC
T ss_pred CEee---cCChhhc-----C-CEEcCCCCchhHHHHHH------------H-------------HHhCCCcCCCCCccCC
Confidence 3688 5865543 1 13447999999998652 2 2222357999988876
Q ss_pred c
Q 011726 288 K 288 (478)
Q Consensus 288 K 288 (478)
.
T Consensus 125 ~ 125 (150)
T 1z6u_A 125 Q 125 (150)
T ss_dssp T
T ss_pred C
Confidence 4
No 115
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=77.01 E-value=1.3 Score=32.80 Aligned_cols=27 Identities=41% Similarity=0.901 Sum_probs=22.8
Q ss_pred cCCCCCCCCccccCCCCceEeccccceeccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLC 307 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C 307 (478)
.+|..|+..+...+ +.|+||..||-.-
T Consensus 26 nRC~~CrKkvgL~g----f~CrCg~~FCs~H 52 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCRCGNLFCGLH 52 (74)
T ss_dssp TBCSSSCCBCGGGC----EECTTSCEECSSS
T ss_pred CcChhhCCcccccC----eecCCCCEechhc
Confidence 58999999988663 8999999999754
No 116
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=76.83 E-value=0.75 Score=34.74 Aligned_cols=34 Identities=32% Similarity=0.877 Sum_probs=23.0
Q ss_pred cCCCCCCCCccccCCCCceEeccccceeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 311 (478)
..||-|.-++... .-..+.|.|||.||..|+..+
T Consensus 12 ~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~ 45 (78)
T 1e4u_A 12 VECPLCMEPLEID-DINFFPCTCGYQICRFCWHRI 45 (78)
T ss_dssp CBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHH
T ss_pred CcCCccCccCccc-cccccccCCCCCcCHHHHHHH
Confidence 5799999877421 122234678888888887764
No 117
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=76.51 E-value=0.76 Score=34.14 Aligned_cols=26 Identities=27% Similarity=0.740 Sum_probs=21.8
Q ss_pred cCCcc-ccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCccc
Q 011726 233 ACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (478)
Q Consensus 233 ~C~~~-fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 288 (478)
+||+. ||..|...+ +.||.|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 79999 999996643 589999999874
No 118
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.39 E-value=0.69 Score=33.92 Aligned_cols=32 Identities=34% Similarity=0.744 Sum_probs=24.9
Q ss_pred cCCCCCCCCccccCCCCceEeccccceeccccccccC
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~~ 313 (478)
..||-|...+.. -++-.|||.||+.|...|-.
T Consensus 21 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCSS-----EEECTTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccCC-----eEEcCCCChhhHHHHHHHHH
Confidence 589999987662 34447999999999998753
No 119
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=76.19 E-value=1.1 Score=36.34 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=18.6
Q ss_pred cCCCCCCCCceEEeccccceeeEecCCccccccccC
Q 011726 209 WCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 244 (478)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~ 244 (478)
.|| -|...+. . .+.-+||+.||..|..
T Consensus 25 ~C~---IC~~~~~-----~-p~~~~CgH~fC~~Ci~ 51 (116)
T 1rmd_A 25 SCQ---ICEHILA-----D-PVETSCKHLFCRICIL 51 (116)
T ss_dssp BCT---TTCSBCS-----S-EEECTTSCEEEHHHHH
T ss_pred CCC---CCCcHhc-----C-cEEcCCCCcccHHHHH
Confidence 688 5865543 1 1444799999999865
No 120
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=75.57 E-value=1.4 Score=32.37 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=22.4
Q ss_pred CcCCCCCCCCccccCCCCceEe-cccccee
Q 011726 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFC 304 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~GCnhm~C-~C~~~FC 304 (478)
.-.||.|+.+++-+.+...+.| .||..|=
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 3589999999998877778888 4765553
No 121
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=74.81 E-value=4.6 Score=29.98 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.|.++.+ +|++.+.|+..|+..+||+++.++.++.
T Consensus 32 ~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 32 QIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4555655 4899999999999999999999999884
No 122
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=74.48 E-value=1.5 Score=32.48 Aligned_cols=29 Identities=34% Similarity=0.829 Sum_probs=23.2
Q ss_pred CCcCCCCCCCCccccCCCCceEeccccceeccc
Q 011726 275 HTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLC 307 (478)
Q Consensus 275 ~~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C 307 (478)
...+|..|+..+... | +.|+||..||-.-
T Consensus 24 ~~~RC~~C~kkvgL~-~---f~CrCg~~FCs~H 52 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT-G---FKCRCGSTFCGTH 52 (74)
T ss_dssp CCCBCSSSCCBCTTT-C---EECTTSCEECTTT
T ss_pred cCccchhhcCccccc-c---eEeccCCEecccc
Confidence 347899999887765 3 8999999999753
No 123
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=74.31 E-value=1.1 Score=33.22 Aligned_cols=32 Identities=25% Similarity=0.676 Sum_probs=24.1
Q ss_pred cCCCCCCCCccccCCCCceEeccccceeccccccccC
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~~ 313 (478)
-.||-|...+.. -++-.|||.||..|...|-.
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~ 44 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNK 44 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCC
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHH
Confidence 479999877653 24447999999999998743
No 124
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.64 E-value=0.78 Score=34.96 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=24.5
Q ss_pred cCCCCCCCCccccCCCCceEeccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
..||-|...+...... -+.-.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~~~~~-~~~~~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 16 LECPICMESFTEEQLR-PKLLHCGHTICRQCLEKLL 50 (88)
T ss_dssp CBCTTTCCBCCTTSSC-EEECSSSCEEEHHHHHHHH
T ss_pred CCCccCCccccccCCC-eEECCCCChhhHHHHHHHH
Confidence 5799998877643211 2333799999999998863
No 125
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=73.61 E-value=0.84 Score=33.17 Aligned_cols=37 Identities=32% Similarity=0.610 Sum_probs=25.9
Q ss_pred CcCCCCCCCCcccc--CCCCceEeccccceecccccccc
Q 011726 276 TKPCPKCHKPVEKN--GGCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 276 ~k~CP~C~~~IeK~--~GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
...||-|...+... +|-.-+.-.|||.||+.|...|-
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 48 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 48 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH
Confidence 36899999887653 23222333699999999998863
No 126
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=73.43 E-value=0.99 Score=30.96 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=26.3
Q ss_pred cCCCCCCCCccccCCCCceEec-cccceeccccccccC
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATGR 313 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~~~~ 313 (478)
..||-|...+..... .+.-. ||+.||..|+..|-.
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~w~~ 41 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLPRCGHGFHAECVDMWLG 41 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHHTTT
T ss_pred CcCccCCccccCCCc--eEECCCCCCcccHHHHHHHHH
Confidence 589999888765433 34454 999999999999753
No 127
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=73.32 E-value=1.9 Score=32.91 Aligned_cols=29 Identities=31% Similarity=0.636 Sum_probs=22.8
Q ss_pred CcCCCCCCCCccccCCCCceEeccccceeccc
Q 011726 276 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWLC 307 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C 307 (478)
..+|..|+..+-...| +.|+||..||-.-
T Consensus 25 ~~rC~~C~kkvgl~~~---f~CrCg~~FC~~H 53 (85)
T 1wff_A 25 MKHCFLCGKKTGLATS---FECRCGNNFCASH 53 (85)
T ss_dssp CCBCSSSCCBCSSSSC---EECTTCCEECTTT
T ss_pred CccchhhCCeecccCC---eEcCCCCEecccC
Confidence 4689999987765434 8999999999753
No 128
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=73.07 E-value=1.1 Score=33.12 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=24.3
Q ss_pred cCCCCCCCCccccCCCCceEec-cccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~~~ 312 (478)
-.||-|...+.. -++-. |||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 47 (74)
T 2yur_A 16 LLCLICKDIMTD-----AVVIPCCGNSYCDECIRTAL 47 (74)
T ss_dssp GSCSSSCCCCTT-----CEECSSSCCEECTTHHHHHH
T ss_pred CCCcCCChHHhC-----CeEcCCCCCHHHHHHHHHHH
Confidence 589999887763 35566 99999999998863
No 129
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=73.01 E-value=0.59 Score=36.16 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=23.6
Q ss_pred cCCCCCCCCccccCCCCceEec-cccceeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~~ 311 (478)
-.||-|...+. +-++-. |||.||..|...|
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~ 44 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTA 44 (92)
T ss_dssp TEETTTTEECS-----SCEECTTTCCEECHHHHHHH
T ss_pred CCCCCCChhhc-----CceECCCCCCHHHHHHHHHH
Confidence 47999987665 235666 9999999999886
No 130
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.67 E-value=0.96 Score=33.08 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=23.8
Q ss_pred cCCCCCCCCccccCCCCceEeccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
..||-|...+.. -++-.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp CBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCT
T ss_pred CCCccCCcccCC-----CEEccCCCHHHHHHHHHHH
Confidence 579999877643 2445799999999998864
No 131
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=72.49 E-value=15 Score=25.93 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 50 AQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 50 ~~~~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.+.+.|..++...|++..-+...|...+||.++.+..|.+
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4667899999999999999999999999999999888874
No 132
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=72.16 E-value=2.7 Score=31.84 Aligned_cols=26 Identities=35% Similarity=0.867 Sum_probs=20.0
Q ss_pred CCCCCCCCccccCCCCceEec-cc--cceeccccccc
Q 011726 278 PCPKCHKPVEKNGGCNLVSCI-CG--QAFCWLCGGAT 311 (478)
Q Consensus 278 ~CP~C~~~IeK~~GCnhm~C~-C~--~~FCw~C~~~~ 311 (478)
.||.|+.++++ |+ || ..||-.|++-.
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~Li 61 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGLI 61 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCCC
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCEe
Confidence 89999999995 73 77 56888887653
No 133
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=71.40 E-value=6.9 Score=28.08 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 011726 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~~ 90 (478)
.|+++.+ +|++...|+..|+..+||++..++.++..
T Consensus 12 ~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 12 ALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4555554 59999999999999999999999988853
No 134
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=70.97 E-value=1.2 Score=31.55 Aligned_cols=36 Identities=31% Similarity=0.604 Sum_probs=24.7
Q ss_pred cCCCCCCCCcccc--CCCCceEeccccceecccccccc
Q 011726 277 KPCPKCHKPVEKN--GGCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~--~GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
..||-|...+... ++-.-+.-.|||.||..|...|-
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 41 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 41 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHH
Confidence 4799998877653 22222333699999999998863
No 135
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.83 E-value=8.2 Score=27.58 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.|.++.+ +|++...|+..|+..+||++..++.++.
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 12 CVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4556665 5999999999999999999999999885
No 136
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=70.51 E-value=2.1 Score=33.36 Aligned_cols=33 Identities=27% Similarity=0.827 Sum_probs=27.8
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccc-----eeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQA-----FCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~-----FCw~C~~~~ 311 (478)
..||.|+..++.++| +.+| .|+.. +|..|..+.
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBC
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHH
Confidence 699999999999988 6779 59854 699998874
No 137
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.50 E-value=1.1 Score=32.80 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=20.6
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~ 311 (478)
..||-|...+.. -++- .|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~ 46 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRH 46 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHH
Confidence 589999887764 2444 57777777777665
No 138
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=70.47 E-value=9.2 Score=29.08 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 55 LRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 55 i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
|.++.+ +|++...|+..|+..+||+++.++.++.
T Consensus 33 I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 33 INQLVY-MGFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHH-HSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 444554 3999999999999999999999999885
No 139
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=70.21 E-value=13 Score=26.12 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 49 AAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 49 ~~~~~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
..+.+.|..++...|++..-+...|...+||.++.+..|.+
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35667899999999999999999999999999999988875
No 140
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=70.19 E-value=1.2 Score=35.62 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=24.9
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~ 312 (478)
-.||-|...+.. -++. .|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 47 (108)
T 2ckl_A 16 LMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYL 47 (108)
T ss_dssp TBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHH
T ss_pred CCCccCChHHhC-----cCEeCCCCChhhHHHHHHHH
Confidence 589999887753 4676 799999999998863
No 141
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=70.09 E-value=2.9 Score=26.99 Aligned_cols=27 Identities=19% Similarity=0.575 Sum_probs=23.4
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceecccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGA 310 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~ 310 (478)
..|+.++.+++ ++| .|+...|+.|...
T Consensus 4 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~ 31 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCKDDGTLSCVICRDS 31 (42)
T ss_dssp CCCCSSCSSCC-------CCCCSSSSSSCCTTSSC
T ss_pred ccchhhCCeee-------EEeCCCCeEEeccCCCC
Confidence 57999988888 999 5999999999863
No 142
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=69.72 E-value=1.4 Score=31.88 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=23.6
Q ss_pred cCCCCCCCCccccCCCCceEeccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
..||-|...+..... .+.-.|||.||+.|+..|-
T Consensus 15 ~~C~IC~~~~~~~~~--~~~~~C~H~fc~~Ci~~~~ 48 (69)
T 2kiz_A 15 EKCTICLSILEEGED--VRRLPCMHLFHQVCVDQWL 48 (69)
T ss_dssp CSBTTTTBCCCSSSC--EEECTTSCEEEHHHHHHHH
T ss_pred CCCeeCCccccCCCc--EEEeCCCCHHHHHHHHHHH
Confidence 689999877753222 2223689999999988863
No 143
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=69.51 E-value=1.6 Score=35.14 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=24.1
Q ss_pred cCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCccccCC
Q 011726 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGG 291 (478)
Q Consensus 233 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~G 291 (478)
+|++.||..|... |...... .....||-|+..+.+..|
T Consensus 60 ~C~H~Fh~~Ci~~------------wl~~~~~---------~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 60 KCSHAFHLLCLLA------------MYCNGNK---------DGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SSCCEECHHHHHH------------HHHHTCC---------SSCCBCTTTCCBSSSCSS
T ss_pred CCCCcccHHHHHH------------HHHcccC---------CCCCcCCCCCCccCCCCC
Confidence 5999999999753 3211000 123689999998875433
No 144
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.13 E-value=2.6 Score=29.78 Aligned_cols=32 Identities=28% Similarity=0.761 Sum_probs=25.8
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceeccccc-cccCCC
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~-~~~~~H 315 (478)
..|+.++.+++ ++| .|+...|+.|.. ..+.+|
T Consensus 15 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~s~eH~~H 48 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQEDGKVICWLCERSQEHRGH 48 (59)
T ss_dssp SBCTTTCCBCC-------EEETTTCSEECHHHHTSTTTTTC
T ss_pred ccChhhCceee-------eecCCCCcEEecccCCCCcCCCC
Confidence 57999998888 999 599999999986 434444
No 145
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.81 E-value=0.91 Score=31.48 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=23.8
Q ss_pred cCCCCCCCCccccCCCCceEeccccceeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 311 (478)
-.||-|...+... +.-.|||.||..|...|
T Consensus 16 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-----VIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCcc-----EeCCCCCccCHHHHHHH
Confidence 5899998877642 33479999999999987
No 146
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.30 E-value=1.5 Score=31.86 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=23.4
Q ss_pred cCCCCCCCCccccCCCCceEeccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
..||-|...+.. +.=.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~ 45 (70)
T 2ecn_A 16 EECCICMDGRAD------LILPCAHSFCQKCIDKWS 45 (70)
T ss_dssp CCCSSSCCSCCS------EEETTTEEECHHHHHHSS
T ss_pred CCCeeCCcCccC------cccCCCCcccHHHHHHHH
Confidence 689999877653 444799999999998864
No 147
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.67 E-value=1.4 Score=31.56 Aligned_cols=36 Identities=31% Similarity=0.570 Sum_probs=25.1
Q ss_pred cCCCCCCCCccccC--CCCceEeccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNG--GCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~--GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
..||-|...+.... +-.-+.-.|||.||..|...|-
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 53 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 53 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHH
Confidence 68999998877542 2211333699999999998863
No 148
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=67.57 E-value=2.3 Score=28.95 Aligned_cols=34 Identities=18% Similarity=0.429 Sum_probs=24.4
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~ 312 (478)
..||-|...+...+ ..+.- .|||.||+.|...|-
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~CgH~fc~~Ci~~~~ 40 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVLPCGHLLHRTCYEEML 40 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEECTTSCEEETTHHHHHH
T ss_pred CcCcccChhhcCCC--cCeEecCCCCcccHHHHHHHH
Confidence 57999988775322 22444 599999999998863
No 149
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=67.46 E-value=2.9 Score=28.60 Aligned_cols=26 Identities=27% Similarity=0.712 Sum_probs=23.4
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceeccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG 309 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~ 309 (478)
..||.++.+++ ++| .|+...|+.|..
T Consensus 9 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~ 35 (53)
T 2did_A 9 SLCPQHHEALS-------LFCYEDQEAVCLICAI 35 (53)
T ss_dssp CBCTTTCCBCC-------EEESSSCSEECHHHHT
T ss_pred CcChhhCCeee-------EEeCCCCeEEeccccC
Confidence 57999998888 999 599999999976
No 150
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=67.41 E-value=1.4 Score=34.55 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=24.7
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~ 312 (478)
-.||-|...+.. -++. .|||.||..|...|-
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFL 54 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHH
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHH
Confidence 589999887763 3566 699999999998864
No 151
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=66.50 E-value=2.6 Score=30.96 Aligned_cols=27 Identities=30% Similarity=0.675 Sum_probs=23.9
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceecccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGA 310 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~ 310 (478)
..||.++.+++ ++| .|+...|+.|...
T Consensus 19 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~ 46 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQTDQTCICYLCMFQ 46 (72)
T ss_dssp CBCTTTCCBCC-------EEESSSCCEECHHHHHT
T ss_pred CcCcccCCceE-------EEeCCCCeEEccccCCC
Confidence 68999998888 999 5999999999864
No 152
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=66.32 E-value=1.5 Score=37.20 Aligned_cols=30 Identities=20% Similarity=0.702 Sum_probs=24.3
Q ss_pred cCCCCCCCCccccCCCCceEeccccceeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 311 (478)
-.||-|...+... ++..||+.||..|...|
T Consensus 32 ~~C~IC~~~~~~p-----v~~~CgH~FC~~Ci~~~ 61 (141)
T 3knv_A 32 YLCSACRNVLRRP-----FQAQCGHRYCSFCLASI 61 (141)
T ss_dssp GBCTTTCSBCSSE-----EECTTSCEEEHHHHHHH
T ss_pred cCCCCCChhhcCc-----EECCCCCccCHHHHHHH
Confidence 4899999877532 66689999999999886
No 153
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=66.17 E-value=2.8 Score=31.02 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=22.0
Q ss_pred cCCCCCCCCccccCCCCceEeccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
..||-|...+..... -+.-.|||.||+.|+..|-
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 16 LECPVCKEDYALGES--VRQLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp CCCTTTTSCCCTTSC--EEECTTSCEEETTTTHHHH
T ss_pred CCCeeCCccccCCCC--EEEeCCCCeecHHHHHHHH
Confidence 689999877653321 1122578888888887764
No 154
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=66.15 E-value=13 Score=25.49 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 52 KEDLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 52 ~~~i~~v~~~l~i-~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.+.|..+.++ |+ +...++..|+..+||+++.++.++.
T Consensus 12 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 12 QQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3456666654 78 8889999999999999999998885
No 155
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=65.91 E-value=1.7 Score=32.57 Aligned_cols=30 Identities=30% Similarity=0.718 Sum_probs=23.2
Q ss_pred cCCCCCCCCccccCCCCceEeccccceeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 311 (478)
-.||-|...+... +.-.|||.||..|+..|
T Consensus 20 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecw_A 20 VTCPICLELLKEP-----VSADCNHSFCRACITLN 49 (85)
T ss_dssp TSCTTTCSCCSSC-----EECTTSCCBCHHHHHHH
T ss_pred CCCcCCChhhCcc-----eeCCCCCHHHHHHHHHH
Confidence 5899998876532 45579999999998876
No 156
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=65.51 E-value=1.9 Score=32.46 Aligned_cols=26 Identities=38% Similarity=0.982 Sum_probs=21.4
Q ss_pred cCCcc-ccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCccc
Q 011726 233 ACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (478)
Q Consensus 233 ~C~~~-fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 288 (478)
+|||. ||..|...+ +.||-|+.+|..
T Consensus 35 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 35 PCGHTVCCESCAAQL------------------------------QSCPVCRSRVEH 61 (79)
T ss_dssp TTCBCCBCHHHHTTC------------------------------SBCTTTCCBCCE
T ss_pred CCCCHHHHHHHHHhc------------------------------CcCCCCCchhhC
Confidence 79999 999997532 489999999884
No 157
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=65.46 E-value=3.4 Score=33.26 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=23.5
Q ss_pred cCCCCCCCCccccCCCCceEeccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
-.||-|...+.. -++=.|||.||..|...|-
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCC
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHH
Confidence 479999877653 2333799999999999864
No 158
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=64.77 E-value=3.8 Score=38.28 Aligned_cols=29 Identities=7% Similarity=-0.102 Sum_probs=18.8
Q ss_pred cccCCCCCCCCceEEeccccceeeEecCCccccccccC
Q 011726 207 VKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 244 (478)
Q Consensus 207 ~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~ 244 (478)
...|| -|...+. ..|+-+||++||..|-.
T Consensus 208 ~~~c~---i~~~~~~------dPv~~~~gh~f~~~~i~ 236 (281)
T 2c2l_A 208 YLCGK---ISFELMR------EPCITPSGITYDRKDIE 236 (281)
T ss_dssp TTBCT---TTCSBCS------SEEECSSCCEEETTHHH
T ss_pred ccCCc---CcCCHhc------CCeECCCCCEECHHHHH
Confidence 44677 5755543 11444699999999854
No 159
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.51 E-value=1.7 Score=32.62 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=22.3
Q ss_pred cCCCCCCCCccccCCCCceEeccccceeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 311 (478)
-.||-|...+.. -++-.|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 45 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVVTKCRHYFCESCALEH 45 (81)
T ss_dssp SBCSSSCSBCCS-----EEECTTSCEEEHHHHHHH
T ss_pred CCCcCCCchhcC-----eeEccCCCHhHHHHHHHH
Confidence 579999887753 234468888888888776
No 160
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.42 E-value=1.3 Score=32.61 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=23.5
Q ss_pred cCCCCCCCCccccCCCCceEeccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
..||-|...+..... .+...|+|.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~~C~H~f~~~Ci~~~~ 49 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE--LGICPCKHAFHRKCLIKWL 49 (74)
T ss_dssp CBCSSSCCBCCSSSC--EEEETTTEEEEHHHHHHHH
T ss_pred CCCcCCCcccCCCCc--EEEcCCCCEecHHHHHHHH
Confidence 589999888764332 1233688888888888763
No 161
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.21 E-value=1.3 Score=32.31 Aligned_cols=29 Identities=34% Similarity=0.729 Sum_probs=21.9
Q ss_pred CcCCCCCCCCccccC--CCCceEeccccceeccc
Q 011726 276 TKPCPKCHKPVEKNG--GCNLVSCICGQAFCWLC 307 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~--GCnhm~C~C~~~FCw~C 307 (478)
..+|-.|+..+...+ | +.|+||..||-.-
T Consensus 15 ~~rC~~C~kk~gL~~~eg---f~CrCg~~FC~~H 45 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQEL---GSCRCGYVFCMLH 45 (67)
T ss_dssp TTBCSSSCCBCCHHHHHH---HCCSSSCCCCTTT
T ss_pred CCcchhhCCeecccccCc---eEecCCCEehhcc
Confidence 468999998887432 3 5789999999753
No 162
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=64.06 E-value=14 Score=25.33 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=28.3
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHcCCChHHHHHHHH
Q 011726 54 DLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLV 88 (478)
Q Consensus 54 ~i~~v~~~l~i-~~~~a~~lL~~~~W~~e~l~e~~~ 88 (478)
.|..+.++ |+ +...+...|+..+||+++.++.++
T Consensus 15 ~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 15 QLEQLSAM-GFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45666654 88 888899999999999999998887
No 163
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=63.97 E-value=4.7 Score=40.09 Aligned_cols=50 Identities=24% Similarity=0.640 Sum_probs=31.4
Q ss_pred CCcccCCCCCCCCceEEeccccceeeEecCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCC
Q 011726 205 KMVKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHK 284 (478)
Q Consensus 205 ~~~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~ 284 (478)
.....|| -|-.... . .+.-+||+.||..|... |.. .....||.|+.
T Consensus 330 ~~~~~C~---ICle~~~-----~-pv~lpCGH~FC~~Ci~~------------wl~-------------~~~~~CP~CR~ 375 (389)
T 2y1n_A 330 STFQLCK---ICAENDK-----D-VKIEPCGHLMCTSCLTS------------WQE-------------SEGQGCPFCRC 375 (389)
T ss_dssp TSSSBCT---TTSSSBC-----C-EEEETTCCEECHHHHHH------------HHH-------------HTCSBCTTTCC
T ss_pred CCCCCCC---ccCcCCC-----C-eEEeCCCChhhHHHHHH------------HHh-------------cCCCCCCCCCC
Confidence 3345787 5743321 1 13447999999998642 321 13378999999
Q ss_pred Cccc
Q 011726 285 PVEK 288 (478)
Q Consensus 285 ~IeK 288 (478)
+|..
T Consensus 376 ~i~~ 379 (389)
T 2y1n_A 376 EIKG 379 (389)
T ss_dssp BCCE
T ss_pred ccCC
Confidence 8874
No 164
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.22 E-value=1.9 Score=32.34 Aligned_cols=30 Identities=33% Similarity=0.749 Sum_probs=22.4
Q ss_pred cCCCCCCCCccccCCCCceEeccccceeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~ 311 (478)
-.||-|...+.. -++-.|||.||..|+..|
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSLDCGHSFCQACLTAN 49 (85)
T ss_dssp CCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHH
T ss_pred CCCCCCCcccCC-----ceeCCCCCHHHHHHHHHH
Confidence 589999987753 133368888999998775
No 165
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=63.13 E-value=18 Score=26.69 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 55 LRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 55 i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
|..+.+ +|++...|+..|+..+||++..++.++.
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 444443 4999999999999999999999998885
No 166
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=62.65 E-value=3.2 Score=27.98 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=23.4
Q ss_pred cCCCCC-CCCccccCCCCceEe-ccccceecccccc
Q 011726 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGGA 310 (478)
Q Consensus 277 k~CP~C-~~~IeK~~GCnhm~C-~C~~~FCw~C~~~ 310 (478)
..||.+ +.++. ++| .|+...|+.|...
T Consensus 7 ~~C~~H~~e~l~-------lfC~~~~~~iC~~C~~~ 35 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCESCDTLTCRDCQLN 35 (50)
T ss_dssp CBCSSSTTCBCC-------EEETTTTEEECHHHHHT
T ss_pred CcCcCCCCCCEE-------EEeCCCCEEEecccCCC
Confidence 579999 78888 999 5999999999764
No 167
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=61.65 E-value=2.1 Score=30.73 Aligned_cols=31 Identities=26% Similarity=0.626 Sum_probs=20.4
Q ss_pred CcCCCCCCCCccccCCCCceEe-ccccceeccccccc
Q 011726 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~ 311 (478)
...||-|...+... ..- .|||.||+.|...|
T Consensus 5 ~~~C~IC~~~~~~~-----~~~~~C~H~fc~~Ci~~~ 36 (68)
T 1chc_A 5 AERCPICLEDPSNY-----SMALPCLHAFCYVCITRW 36 (68)
T ss_dssp CCCCSSCCSCCCSC-----EEETTTTEEESTTHHHHH
T ss_pred CCCCeeCCccccCC-----cEecCCCCeeHHHHHHHH
Confidence 36899998876521 223 47777777777665
No 168
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=60.28 E-value=7.8 Score=29.90 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=25.8
Q ss_pred CccccccccccccccccCC--ceecCCCCccchhhHHHH
Q 011726 112 PLSSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEH 148 (478)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~y 148 (478)
+......|.+|...|.... -.--.||+.||..|....
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4445678999998875321 122389999999997654
No 169
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.04 E-value=2.2 Score=34.00 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=23.2
Q ss_pred cCCCCCCCCccccCCCCceEeccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~ 312 (478)
-.||-|...+.. -++-.|||.||+.|...|-
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 52 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKLL 52 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHH
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHHH
Confidence 589999887752 1333699999999988763
No 170
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.54 E-value=19 Score=27.31 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 011726 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~~ 90 (478)
.|.++.+ +|++...|+..|+..+||++.-++.+++.
T Consensus 32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3555555 59999999999999999999999998863
No 171
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=58.49 E-value=5.2 Score=29.26 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=18.8
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccce
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAF 303 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~F 303 (478)
-.||.|+.+++-+.+=..+.| .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 589999999886655455777 365544
No 172
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.94 E-value=20 Score=27.26 Aligned_cols=38 Identities=11% Similarity=0.297 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 011726 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (478)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~~ 90 (478)
.+.|.++.+ +|++...|+..|+..+||++..++.+++.
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 445667776 59999999999999999999999999863
No 173
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.87 E-value=4.3 Score=30.50 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=17.3
Q ss_pred CCCCceEeccccceeccccccccC
Q 011726 290 GGCNLVSCICGQAFCWLCGGATGR 313 (478)
Q Consensus 290 ~GCnhm~C~C~~~FCw~C~~~~~~ 313 (478)
+.+..+.-.|||.|+..|+..|-.
T Consensus 39 ~~~~~~~~~C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 39 EDCVVVWGECNHSFHNCCMSLWVK 62 (81)
T ss_dssp TTCCEEEETTSCEEEHHHHHHHTT
T ss_pred CceEEEeCCCCCccChHHHHHHHH
Confidence 444444446999999999999754
No 174
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=57.82 E-value=4.2 Score=27.16 Aligned_cols=26 Identities=19% Similarity=0.645 Sum_probs=22.3
Q ss_pred cCCCCCC-CCccccCCCCceEe-ccccceeccccc
Q 011726 277 KPCPKCH-KPVEKNGGCNLVSC-ICGQAFCWLCGG 309 (478)
Q Consensus 277 k~CP~C~-~~IeK~~GCnhm~C-~C~~~FCw~C~~ 309 (478)
..|+..+ .++. ++| .|+...||.|..
T Consensus 7 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~ 34 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKV 34 (48)
T ss_dssp CBCSSSTTSBCC-------EEETTTTEEECHHHHH
T ss_pred CcCCCCCCcccc-------EEcCCCCeeEcccccC
Confidence 5689888 7788 999 599999999963
No 175
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=57.72 E-value=12 Score=35.19 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 011726 48 LAAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (478)
Q Consensus 48 ~~~~~~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~~ 90 (478)
...+++.|+.-+.+.|.++..|+..|..++||.+..++.|++.
T Consensus 12 ~~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~ 54 (270)
T 3bq3_A 12 ASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDK 54 (270)
T ss_dssp -CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3446677999999999999999999999999999999999963
No 176
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=57.40 E-value=5.5 Score=29.31 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=20.7
Q ss_pred CcCCCCCCCCccccCCCCceEe-cccccee
Q 011726 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFC 304 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~GCnhm~C-~C~~~FC 304 (478)
.-.||.|+.+++-+.+=..+.| .||..|=
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCceec
Confidence 3589999999887655456778 4766553
No 177
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=56.48 E-value=6.3 Score=28.89 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=19.2
Q ss_pred CcCCCCCCCCccccCCCCceEe-ccccce
Q 011726 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAF 303 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~GCnhm~C-~C~~~F 303 (478)
.-.||.|+.+++-..+=..+.| .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 3589999998886554455777 365544
No 178
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=55.85 E-value=4.9 Score=30.33 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=25.6
Q ss_pred cCCCCC-CCCccccCCCCceEe-ccccceeccccc-cccCCC
Q 011726 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (478)
Q Consensus 277 k~CP~C-~~~IeK~~GCnhm~C-~C~~~FCw~C~~-~~~~~H 315 (478)
..||.+ +.+++ ++| .|+...|+.|.. ..+.+|
T Consensus 19 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 53 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCVSDDQLICALCKLVGRHRDH 53 (84)
T ss_dssp CCCSSCSSSCCC-------EEETTTTEEECHHHHHTSTTTTC
T ss_pred CcCcCcCCcccc-------EEcCCCCceEcccCcCCCCCCCC
Confidence 579999 58888 999 599999999976 444444
No 179
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=55.51 E-value=23 Score=25.34 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-ChHHHHHHHHh
Q 011726 54 DLRRVMELLSLREHHARTLLIHYRW-DVEKLLAVLVE 89 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~W-~~e~l~e~~~~ 89 (478)
.|..+.+ +|++...|+..|+..+| |++..++.+++
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4556665 59999999999999999 99999998885
No 180
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=55.49 E-value=1.9 Score=33.26 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=24.7
Q ss_pred cCCCCCCCCccccCCCCceEeccccceeccccccccC
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~~ 313 (478)
..||-|...+.... ..+.-.|||.||+.|...|-.
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp SEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHT
T ss_pred CCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHH
Confidence 56999987665432 122336999999999998753
No 181
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=54.29 E-value=7.7 Score=31.35 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=21.8
Q ss_pred CcCCCCCCCCccc-c---CCCCceEe-ccccce
Q 011726 276 TKPCPKCHKPVEK-N---GGCNLVSC-ICGQAF 303 (478)
Q Consensus 276 ~k~CP~C~~~IeK-~---~GCnhm~C-~C~~~F 303 (478)
.+-||.|+.++.- . .|.+.+.| .|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 4789999987643 2 36889999 599977
No 182
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=54.18 E-value=5.9 Score=33.11 Aligned_cols=29 Identities=17% Similarity=0.423 Sum_probs=22.1
Q ss_pred CCcCCCCCCCCcc-cc---CCCCceEec-cccce
Q 011726 275 HTKPCPKCHKPVE-KN---GGCNLVSCI-CGQAF 303 (478)
Q Consensus 275 ~~k~CP~C~~~Ie-K~---~GCnhm~C~-C~~~F 303 (478)
..+.||.|+.++- +. .|.+.+.|+ |+|.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 4589999997663 32 368899995 99965
No 183
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=53.22 E-value=8.2 Score=37.75 Aligned_cols=28 Identities=25% Similarity=0.722 Sum_probs=22.7
Q ss_pred EecCCcc-ccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCccc
Q 011726 231 ECACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (478)
Q Consensus 231 ~C~C~~~-fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 288 (478)
.=+||+. ||..|...+ ..||-|+.+|.+
T Consensus 310 ~lpCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 310 FIPCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp EETTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred EcCCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 3379999 999997632 589999999875
No 184
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=52.45 E-value=6.5 Score=27.87 Aligned_cols=32 Identities=16% Similarity=0.491 Sum_probs=25.3
Q ss_pred cCCCCC-CCCccccCCCCceEe-ccccceecccccc-ccCCC
Q 011726 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGGA-TGRDH 315 (478)
Q Consensus 277 k~CP~C-~~~IeK~~GCnhm~C-~C~~~FCw~C~~~-~~~~H 315 (478)
..||.+ +.++. ++| .|+...|+.|... -+.+|
T Consensus 9 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 43 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKVFGIHKAC 43 (64)
T ss_dssp CCCSSCTTCCCC-------SEESSSCCCCCSHHHHSSSTTSS
T ss_pred CcCcCcCCCccc-------eEcCcCCceeCccccCCCcCCCC
Confidence 579999 88888 999 5999999999753 33444
No 185
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.92 E-value=24 Score=24.28 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCHHH-HHHHHHHcCCChHHHHHHHHh
Q 011726 54 DLRRVMELLSLREHH-ARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~-a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.|.++.++ |++... ++..|+..+||+++.++.++.
T Consensus 12 ~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 12 QLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45556655 886554 599999999999999999985
No 186
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.91 E-value=44 Score=30.29 Aligned_cols=33 Identities=21% Similarity=0.550 Sum_probs=23.3
Q ss_pred cccccccccccccCC-cee-cCCCCccchhhHHHH
Q 011726 116 TVMCDICMEEVAGDK-ATK-MDCGHCFCNDCWTEH 148 (478)
Q Consensus 116 ~~~C~IC~e~~~~~~-~~~-l~CgH~fC~~C~~~y 148 (478)
...|.+|...|+... -.- -.||+.||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 358999998875421 122 389999999996654
No 187
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.51 E-value=30 Score=25.54 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-CChHHHHHHHHhc
Q 011726 54 DLRRVMELLSLREHHARTLLIHYR-WDVEKLLAVLVEN 90 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~-W~~e~l~e~~~~~ 90 (478)
.|.++.+ +|++...|+..|+..+ |+++.-++.+++.
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 12 VIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 3555555 5999999999999887 6899999999864
No 188
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=50.38 E-value=8.5 Score=28.01 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=20.4
Q ss_pred CcCCCCCCCCccccCCCCceEe-cccccee
Q 011726 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFC 304 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~GCnhm~C-~C~~~FC 304 (478)
.-.||.|+.+++-...=+.+.| .||..|=
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAYR 39 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCcccc
Confidence 3589999999886654455778 4766553
No 189
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=50.31 E-value=24 Score=24.81 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=33.4
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 52 KEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 52 ~~~i~~v~~~l-~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.+.|..+.+++ ++.....+..|...++|++..++.+.+
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35677788888 899999999999999999999999885
No 190
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=48.22 E-value=12 Score=34.28 Aligned_cols=21 Identities=29% Similarity=0.868 Sum_probs=16.3
Q ss_pred HHHHHHHhCCcCCCCCCC-Cccc
Q 011726 267 ETVNWITVHTKPCPKCHK-PVEK 288 (478)
Q Consensus 267 ~~~~~i~~~~k~CP~C~~-~IeK 288 (478)
-+..|+..|. .||+|+. ++.+
T Consensus 26 LTE~Wv~~n~-yCPnCG~~~l~~ 47 (257)
T 4esj_A 26 LTEDWVYRQS-YCPNCGNNPLNH 47 (257)
T ss_dssp HHHHHHHHHC-CCTTTCCSSCEE
T ss_pred hhHHHHHHCC-cCCCCCChhhhh
Confidence 4668888775 9999998 5654
No 191
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=47.91 E-value=3.8 Score=33.43 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=0.0
Q ss_pred cCCCCceEeccccceeccccccccCC
Q 011726 289 NGGCNLVSCICGQAFCWLCGGATGRD 314 (478)
Q Consensus 289 ~~GCnhm~C~C~~~FCw~C~~~~~~~ 314 (478)
.+.|.-+.-.|+|.|+..|...|-..
T Consensus 74 ~~~~~v~~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 74 SEECTVAWGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp --------------------------
T ss_pred ccccccccCCcCceEcHHHHHHHHHc
Confidence 34455566679999999999997543
No 192
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=47.54 E-value=7.9 Score=34.36 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=19.1
Q ss_pred CcCCCCCCCCc-cccCCCCceEe-ccccceec
Q 011726 276 TKPCPKCHKPV-EKNGGCNLVSC-ICGQAFCW 305 (478)
Q Consensus 276 ~k~CP~C~~~I-eK~~GCnhm~C-~C~~~FCw 305 (478)
-+.||+|+..+ .....+.| +| +|++-|++
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred cccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 37899999654 34555555 77 67776643
No 193
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=46.67 E-value=8.2 Score=30.77 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=17.7
Q ss_pred CCCCceEeccccceeccccccccCC
Q 011726 290 GGCNLVSCICGQAFCWLCGGATGRD 314 (478)
Q Consensus 290 ~GCnhm~C~C~~~FCw~C~~~~~~~ 314 (478)
++|.-+.-.|+|.|+..|...|-..
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLKT 88 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHTT
T ss_pred ccceEeecccCcEECHHHHHHHHHc
Confidence 4455555579999999999887543
No 194
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.31 E-value=46 Score=24.58 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 53 EDLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 53 ~~i~~v~~~l~i-~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
+.|.++.++ |+ ....++..|+..+||+++.++.++.
T Consensus 31 ~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 31 QELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 346666665 77 4677799999999999999999984
No 195
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=46.21 E-value=18 Score=27.47 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=28.2
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCccccCCCCceEec--cccceecccccc
Q 011726 236 AQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCI--CGQAFCWLCGGA 310 (478)
Q Consensus 236 ~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~GCnhm~C~--C~~~FCw~C~~~ 310 (478)
..+|+.|+..-|..-.|... .+|.+|+..-... -.|. =...+||.|++.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~---------------------~rcY~c~~~gh~~-----~~c~~p~~~~~CYnCG~~ 55 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI---------------------WRAYILVDDNEKA-----KPKVLPFHTIYCYNCGGK 55 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG---------------------TCCCCBC------------------CCCBCSSSSCB
T ss_pred cCCCCCCCCCCCccccCCCc---------------------ccccccccCCccc-----ccccCCCCCCeecccCCC
Confidence 45799999999998888641 2566666431110 1131 245799999987
No 196
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.11 E-value=6.1 Score=27.98 Aligned_cols=34 Identities=26% Similarity=0.719 Sum_probs=24.0
Q ss_pred cCCCCCCCCceEEeccccceeeEec-CCccccccccCCCCCC
Q 011726 209 WCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEAHSP 249 (478)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~H~~ 249 (478)
.|- +|+..+. +. ....|+ |+..||..|-.=.|..
T Consensus 17 ~C~---~C~~~~~--~~--~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCY---GCQGELK--DQ--HVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EET---TTTEECT--TS--EEECCTTTTCCBCHHHHHTTTTT
T ss_pred ccc---ccCcccC--CC--ccEECCccCcCcccchhHHHHhh
Confidence 575 6876653 11 126797 9999999998777764
No 197
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=46.01 E-value=18 Score=27.41 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=25.4
Q ss_pred CccccccccccccccccCCc-ee-cCCCCccchhhHHH
Q 011726 112 PLSSTVMCDICMEEVAGDKA-TK-MDCGHCFCNDCWTE 147 (478)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~~-~~-l~CgH~fC~~C~~~ 147 (478)
+......|.+|...|+.... .- -.||+.||..|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 44556789999988754221 22 37999999999654
No 198
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=45.79 E-value=31 Score=26.42 Aligned_cols=49 Identities=22% Similarity=0.606 Sum_probs=34.0
Q ss_pred ccccccccccccccC---Cceec--CCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCcc
Q 011726 115 STVMCDICMEEVAGD---KATKM--DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~---~~~~l--~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~ 172 (478)
....|.||-+++..+ ++|.. .|+-..|+.|+.-- .++|. -.||. |+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE----rkeG~---q~Cpq--CktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE----RREGT---QNCPQ--CKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH----HHTSC---SSCTT--TCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH----HhccC---ccccc--cCCcc
Confidence 447899999996432 33433 78889999997653 35565 57888 77654
No 199
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=45.75 E-value=13 Score=28.44 Aligned_cols=53 Identities=26% Similarity=0.625 Sum_probs=36.9
Q ss_pred CCCceEEeccccceeeEec-CCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcCCCCCCCCccccCCC
Q 011726 215 HCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGC 292 (478)
Q Consensus 215 ~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~GC 292 (478)
-|+--|.........|-|. |+...|..|.. +. ++...+.||.|+.+..+..|+
T Consensus 21 iCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE----------YE---------------rkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 21 ICGDQIGLTVEGDLFVACNECGFPACRPCYE----------YE---------------RREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp SSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH----------HH---------------HHTSCSSCTTTCCCCCCCTTC
T ss_pred cccCccccCCCCCEEEeeeccCChhhHHHHH----------HH---------------HhccCccccccCCccccccCC
Confidence 5777766665555678897 99988887753 11 123458999999998765554
No 200
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.45 E-value=4.5 Score=28.26 Aligned_cols=26 Identities=27% Similarity=0.745 Sum_probs=23.3
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceeccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG 309 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~ 309 (478)
..|+.++..++ ++| .|+...|+.|..
T Consensus 19 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~ 45 (57)
T 2egm_A 19 GICPKHQEALK-------LFCEVDEEAICVVCRE 45 (57)
T ss_dssp SBCTTTCCBCC-------EEETTTTEEECHHHHH
T ss_pred CcChhhCceee-------EEcCCCCcEEecccCC
Confidence 57999998888 999 599999999986
No 201
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=45.44 E-value=11 Score=32.25 Aligned_cols=29 Identities=17% Similarity=0.411 Sum_probs=20.5
Q ss_pred cCCCC--CCCCccccCCCCceEe-ccccceec
Q 011726 277 KPCPK--CHKPVEKNGGCNLVSC-ICGQAFCW 305 (478)
Q Consensus 277 k~CP~--C~~~IeK~~GCnhm~C-~C~~~FCw 305 (478)
+.||+ |+.-+--..-=+..+| +||+-+++
T Consensus 119 ~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp CBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred CcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 78999 9986643222246789 89988875
No 202
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=45.33 E-value=8.4 Score=31.59 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=21.7
Q ss_pred CcCCCCCCCCccc----cCCCCceEe-ccccce
Q 011726 276 TKPCPKCHKPVEK----NGGCNLVSC-ICGQAF 303 (478)
Q Consensus 276 ~k~CP~C~~~IeK----~~GCnhm~C-~C~~~F 303 (478)
.+-||.|+.++.- ..+-+.+.| .|++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 4789999987662 267889999 499876
No 203
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=45.33 E-value=40 Score=25.53 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=28.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHc-CCChHHHHHHHHhc
Q 011726 55 LRRVMELLSLREHHARTLLIHY-RWDVEKLLAVLVEN 90 (478)
Q Consensus 55 i~~v~~~l~i~~~~a~~lL~~~-~W~~e~l~e~~~~~ 90 (478)
|.++.+ +|++...|+..|++. +||++..++.+++.
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 33 VAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 445555 599999998888877 59999999998863
No 204
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=44.86 E-value=7 Score=28.74 Aligned_cols=24 Identities=25% Similarity=0.704 Sum_probs=13.2
Q ss_pred cCCCCCCCCccccCCCCceEec-ccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCI-CGQ 301 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~-C~~ 301 (478)
-.|+.|+..++...+ .-+.|+ ||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 367777777654422 335553 554
No 205
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=44.54 E-value=14 Score=32.52 Aligned_cols=30 Identities=7% Similarity=-0.148 Sum_probs=19.5
Q ss_pred CcccCCCCCCCCceEEeccccceeeEecCCccccccccC
Q 011726 206 MVKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 244 (478)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~ 244 (478)
....|| -|...+. .+ |+-+||+.||..|-.
T Consensus 105 ~~f~CP---I~~elm~-----DP-V~~~~Ghtfer~~I~ 134 (179)
T 2f42_A 105 DYLCGK---ISFELMR-----EP-CITPSGITYDRKDIE 134 (179)
T ss_dssp GGGBCT---TTCSBCS-----SE-EECTTSCEEEHHHHH
T ss_pred Hhhccc---CccccCC-----CC-eECCCCCEECHHHHH
Confidence 445787 5765543 11 444799999998754
No 206
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=44.53 E-value=9.6 Score=33.45 Aligned_cols=24 Identities=25% Similarity=0.930 Sum_probs=20.2
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQA 302 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~ 302 (478)
-.||+|+.+..+.+ ++|.| .||..
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 48999999998866 99999 59864
No 207
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=44.45 E-value=12 Score=30.88 Aligned_cols=28 Identities=29% Similarity=0.876 Sum_probs=20.2
Q ss_pred CCcCCCCCCCCccccCCCCceEec-cccce
Q 011726 275 HTKPCPKCHKPVEKNGGCNLVSCI-CGQAF 303 (478)
Q Consensus 275 ~~k~CP~C~~~IeK~~GCnhm~C~-C~~~F 303 (478)
..-+||+|+....=..|= .+.|. |+++|
T Consensus 26 ~lP~CP~C~seytYeDg~-l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGA-LLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECSS-SEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecCC-eEECCcccccc
Confidence 457999999877655553 37784 88876
No 208
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=44.11 E-value=8.2 Score=25.86 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.|+++.+ +|.+...|...|...+||.+...+.++.
T Consensus 7 aI~rL~~-mGF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 7 AIERLKA-LGFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHTTTTT-TTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3555543 4999999999999999999998888874
No 209
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=43.77 E-value=31 Score=24.74 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 011726 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (478)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~~ 90 (478)
+.|..+.+..|.+..++...|...+||+++-++.+-++
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45778888999999999999999999999999887754
No 210
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.27 E-value=15 Score=30.13 Aligned_cols=33 Identities=27% Similarity=0.663 Sum_probs=24.5
Q ss_pred CcCCCCCCCCccccCCCCceEec-cccceecccccc
Q 011726 276 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 310 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~ 310 (478)
...|+.|+...-- .--.-.|+ ||.-||..|...
T Consensus 69 ~~~C~~C~~~Fs~--~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSV--TVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCcccc--ccccccCCCCCeEEChHHhCC
Confidence 4689999987652 12335795 999999999865
No 211
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=43.07 E-value=27 Score=28.39 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=16.1
Q ss_pred CCccccccccCC-CCCCCCcch
Q 011726 234 CGAQFCFSCLSE-AHSPCSCSM 254 (478)
Q Consensus 234 C~~~fC~~C~~~-~H~~~~C~~ 254 (478)
|....|+.|+.. -|....|..
T Consensus 20 Cp~~~C~~Cg~~~gH~~~~C~~ 41 (124)
T 2lli_A 20 CPHIICSYCGATDDHYSRHCPK 41 (124)
T ss_dssp TTSCCCTTTCCTTTCCTTTGGG
T ss_pred CcCCcCcCCCCcCCccCcccCC
Confidence 667888888887 788777753
No 212
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.66 E-value=15 Score=30.13 Aligned_cols=37 Identities=19% Similarity=0.491 Sum_probs=25.3
Q ss_pred CccccccccccccccccCC-cee-cCCCCccchhhHHHH
Q 011726 112 PLSSTVMCDICMEEVAGDK-ATK-MDCGHCFCNDCWTEH 148 (478)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~-~~~-l~CgH~fC~~C~~~y 148 (478)
+......|.+|...|+... -.- -.||+.||..|....
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3445568999998875321 122 379999999996543
No 213
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.41 E-value=36 Score=24.26 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHc-CCChHHHHHHHHhc
Q 011726 55 LRRVMELLSLREHHARTLLIHY-RWDVEKLLAVLVEN 90 (478)
Q Consensus 55 i~~v~~~l~i~~~~a~~lL~~~-~W~~e~l~e~~~~~ 90 (478)
|.++.+ +|++...|+..|+.. +||++..++.+++.
T Consensus 13 v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 13 LESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp HHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 444554 699999999999988 79999999998863
No 214
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=42.07 E-value=16 Score=31.17 Aligned_cols=19 Identities=42% Similarity=1.127 Sum_probs=14.8
Q ss_pred cCCCCCCCCccccCCCCceEec--ccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCI--CGQ 301 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~--C~~ 301 (478)
|.||+|..+++ ++-|+ ||+
T Consensus 111 k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 111 KSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp SBCSSSCCBEE------EECCCTBTTB
T ss_pred CCCCCCCccee------eEeccCcCCC
Confidence 89999998887 47774 653
No 215
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=41.27 E-value=10 Score=30.98 Aligned_cols=38 Identities=26% Similarity=0.519 Sum_probs=22.6
Q ss_pred CccccccccccccccccCC--ceecCCCCccchhhHHHHH
Q 011726 112 PLSSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHF 149 (478)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yi 149 (478)
|......|..|...|.... -.--.||..||..|....+
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 3445568999988875321 1223899999999966554
No 216
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.95 E-value=56 Score=33.31 Aligned_cols=15 Identities=47% Similarity=0.585 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q 011726 433 QHLFEDQQQQLEANV 447 (478)
Q Consensus 433 ~~~fe~~q~~le~~~ 447 (478)
.+-.+.+|+|||...
T Consensus 175 ~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 175 LKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 357888899888654
No 217
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=40.27 E-value=67 Score=22.41 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHcCCChHHHHHHHHh
Q 011726 52 KEDLRRVMELLSLR-EHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 52 ~~~i~~v~~~l~i~-~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.+.|.++.++ |++ ...++..|+..+||+++.++.++.
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456666665 775 666799999999999999999884
No 218
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=39.97 E-value=14 Score=27.82 Aligned_cols=35 Identities=29% Similarity=0.688 Sum_probs=24.2
Q ss_pred ccccccccccccccccCCc--eecCCCCccchhhHHH
Q 011726 113 LSSTVMCDICMEEVAGDKA--TKMDCGHCFCNDCWTE 147 (478)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~--~~l~CgH~fC~~C~~~ 147 (478)
..+...|.+|...|..... .--.||..||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3345689999988753211 1237999999999754
No 219
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=39.79 E-value=23 Score=30.20 Aligned_cols=35 Identities=23% Similarity=0.513 Sum_probs=28.6
Q ss_pred CcCCCCCCCCccccCCCCceEe-ccccceeccccccc
Q 011726 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (478)
Q Consensus 276 ~k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~ 311 (478)
...|..|..+.---+|. -..| .|++.+|-.|+...
T Consensus 68 ~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~~~ 103 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSHAH 103 (153)
T ss_dssp GTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEECC
T ss_pred CccchhhcCccccccCC-CCcCCCCCchhhccccccc
Confidence 47899999998877776 3678 59999999999643
No 220
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=39.51 E-value=38 Score=27.45 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=14.0
Q ss_pred cccccccCCCCCCCCcch
Q 011726 237 QFCFSCLSEAHSPCSCSM 254 (478)
Q Consensus 237 ~fC~~C~~~~H~~~~C~~ 254 (478)
..|+.|+..-|....|..
T Consensus 43 ~~C~~Cg~~GH~~~~C~~ 60 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPH 60 (124)
T ss_dssp SCSSSSSCSSSSTTTSCC
T ss_pred ccccccCCCCCccccCcC
Confidence 478899888888777764
No 221
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=39.41 E-value=20 Score=25.82 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=25.1
Q ss_pred ccCCCCCCCCceEEeccccceeeEec-CCcccccccc
Q 011726 208 KWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCL 243 (478)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~ 243 (478)
..|| +|++.-.+-+.....|.|. ||...|.-=+
T Consensus 8 VKCp---~C~niq~VFShA~tvV~C~~Cg~~L~~PTG 41 (66)
T 1qxf_A 8 VKCP---DCEHEQVIFDHPSTIVKCIICGRTVAEPTG 41 (66)
T ss_dssp EECT---TTCCEEEEESSCSSCEECSSSCCEEEECCS
T ss_pred EECC---CCCCceEEEecCceEEEcccCCCEEeecCC
Confidence 4688 8999877666666679997 9999886544
No 222
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=39.26 E-value=17 Score=25.30 Aligned_cols=25 Identities=40% Similarity=1.071 Sum_probs=17.3
Q ss_pred cCCCCCCCCccccCCCCceEec---cccce
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCI---CGQAF 303 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~---C~~~F 303 (478)
-.||.|+.+++-.. ..+.|. ||..|
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 58999999988665 456664 55443
No 223
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=39.16 E-value=31 Score=26.22 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=21.6
Q ss_pred ccccccccccccccCCceecCCCCccchh
Q 011726 115 STVMCDICMEEVAGDKATKMDCGHCFCND 143 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~ 143 (478)
...-|..|-..+.....+...||..||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cCccchhhCCeecccCCeEcCCCCEeccc
Confidence 45689999887654345677899999964
No 224
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=38.09 E-value=19 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=14.8
Q ss_pred CcCCCCCCC-CccccCCCCceEe-cccc
Q 011726 276 TKPCPKCHK-PVEKNGGCNLVSC-ICGQ 301 (478)
Q Consensus 276 ~k~CP~C~~-~IeK~~GCnhm~C-~C~~ 301 (478)
...||.|+. .|.....-.-+.| .||.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 358999976 4544333333666 3653
No 225
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=37.58 E-value=91 Score=22.11 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHH
Q 011726 51 QKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLV 88 (478)
Q Consensus 51 ~~~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~ 88 (478)
+...+++-..-++..|+-|+-||---+|+....+..|-
T Consensus 17 mdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~e 54 (73)
T 2l2d_A 17 MDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYE 54 (73)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHH
Confidence 55566777778899999999999999999999887765
No 226
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=37.10 E-value=14 Score=34.72 Aligned_cols=24 Identities=42% Similarity=1.009 Sum_probs=17.3
Q ss_pred cCCCCCCCCccc--cCCCCceEe-ccc
Q 011726 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (478)
Q Consensus 277 k~CP~C~~~IeK--~~GCnhm~C-~C~ 300 (478)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 799999999987 455555555 354
No 227
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.92 E-value=23 Score=27.60 Aligned_cols=26 Identities=38% Similarity=0.968 Sum_probs=17.0
Q ss_pred cCCCCCCCCccccCCCCceEeccc--cceeccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCICG--QAFCWLCGG 309 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~C~--~~FCw~C~~ 309 (478)
-.||.|+.++|+-.. || -.||-.|-+
T Consensus 62 a~CPdC~q~LevLkA-------CGAvdYFC~~chg 89 (101)
T 2jne_A 62 ALCPDCHQPLQVLKA-------CGAVDYFCQHGHG 89 (101)
T ss_dssp EECTTTCSBCEEEEE-------TTEEEEEETTTTE
T ss_pred ccCcchhhHHHHHHH-------hcCcchhhccCCc
Confidence 489999999994333 44 345555543
No 228
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.88 E-value=19 Score=32.62 Aligned_cols=32 Identities=28% Similarity=0.699 Sum_probs=23.9
Q ss_pred cCCCCCCCCccccCCCCceEec-cccceecccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 310 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~ 310 (478)
..|+.|+...-- .--.-.|+ ||.-||..|...
T Consensus 162 ~~C~~C~~~F~~--~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTF--TNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCS--SSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCC--cccccccCCcCCEEChHHhCC
Confidence 589999987642 22335795 999999999865
No 229
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=35.91 E-value=84 Score=20.66 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHcCCChHHHHHHHH
Q 011726 52 KEDLRRVMELLSLR-EHHARTLLIHYRWDVEKLLAVLV 88 (478)
Q Consensus 52 ~~~i~~v~~~l~i~-~~~a~~lL~~~~W~~e~l~e~~~ 88 (478)
...|..+.++ |++ ...+...|+..+||+++.++.++
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3456666664 775 55668999999999999999887
No 230
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=35.55 E-value=17 Score=28.32 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=14.3
Q ss_pred ccchhhHHHHHHHHHhc
Q 011726 139 CFCNDCWTEHFIVKINE 155 (478)
Q Consensus 139 ~fC~~C~~~yi~~~i~~ 155 (478)
-||++|+..|+..+-.+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999987654
No 231
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=35.49 E-value=12 Score=35.14 Aligned_cols=24 Identities=25% Similarity=0.757 Sum_probs=17.8
Q ss_pred cCCCCCCCCccc--cCCCCceEe-ccc
Q 011726 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (478)
Q Consensus 277 k~CP~C~~~IeK--~~GCnhm~C-~C~ 300 (478)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 799999999987 466555556 355
No 232
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.44 E-value=24 Score=25.16 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=25.0
Q ss_pred ccCCCCCCCCceEEeccccceeeEec-CCcccccccc
Q 011726 208 KWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCL 243 (478)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~ 243 (478)
..|| +|++.-.+-+.....|.|. |+...|.-=+
T Consensus 16 VkCp---~C~~~q~VFSha~t~V~C~~Cgt~L~~PTG 49 (63)
T 3j20_W 16 VKCI---DCGNEQIVFSHPATKVRCLICGATLVEPTG 49 (63)
T ss_dssp EECS---SSCCEEEEESSCSSCEECSSSCCEEEECCS
T ss_pred EECC---CCCCeeEEEecCCeEEEccCcCCEEecCCC
Confidence 4788 8998877666566679997 9999886533
No 233
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=35.24 E-value=12 Score=35.26 Aligned_cols=24 Identities=38% Similarity=0.933 Sum_probs=17.7
Q ss_pred cCCCCCCCCccc--cCCCCceEe-ccc
Q 011726 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (478)
Q Consensus 277 k~CP~C~~~IeK--~~GCnhm~C-~C~ 300 (478)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 799999999997 566555555 354
No 234
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=35.06 E-value=18 Score=28.30 Aligned_cols=17 Identities=18% Similarity=0.626 Sum_probs=14.6
Q ss_pred ccchhhHHHHHHHHHhc
Q 011726 139 CFCNDCWTEHFIVKINE 155 (478)
Q Consensus 139 ~fC~~C~~~yi~~~i~~ 155 (478)
-||++|+..|+..+-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999987754
No 235
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=35.05 E-value=17 Score=30.31 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=20.5
Q ss_pred CCcccCCCCCCCCceEEeccc---cceeeEec-CCcc
Q 011726 205 KMVKWCPSTPHCGNAIRVEEV---EVCEVECA-CGAQ 237 (478)
Q Consensus 205 ~~~~~CP~~p~C~~~i~~~~~---~~~~v~C~-C~~~ 237 (478)
..+++|| .|++.+.+..+ ....+.|+ |++.
T Consensus 22 ~~~~FCP---eCgNmL~pked~~~~~l~~~CrtCgY~ 55 (133)
T 3qt1_I 22 TTFRFCR---DCNNMLYPREDKENNRLLFECRTCSYV 55 (133)
T ss_dssp CCCCBCT---TTCCBCBCCBCTTTCCBCCBCSSSCCB
T ss_pred cCCeeCC---CCCCEeeECccCCCceeEEECCCCCCc
Confidence 4678999 79999987653 23346665 6664
No 236
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=34.90 E-value=16 Score=25.90 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=21.2
Q ss_pred CCcCCCCCCCCccccCCCCceEeccccceeccccccccCCCC
Q 011726 275 HTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHT 316 (478)
Q Consensus 275 ~~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~~~H~ 316 (478)
..+.||+|++..- ...|-.||++....|.
T Consensus 5 ~mr~C~~CgvYTL-------------k~~CP~CG~~T~~~hP 33 (60)
T 2apo_B 5 RMKKCPKCGLYTL-------------KEICPKCGEKTVIPKP 33 (60)
T ss_dssp CCEECTTTCCEES-------------SSBCSSSCSBCBCCCC
T ss_pred hceeCCCCCCEec-------------cccCcCCCCcCCCCCC
Confidence 4588999987665 3567888888766664
No 237
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=34.58 E-value=1.2e+02 Score=25.45 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=33.2
Q ss_pred ccccccccccccccCCceec-CCCCccchhhHHHHHH----HHH--hcCCcccccCCCcccCC
Q 011726 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFI----VKI--NEGQSKRIRCMAHKCNA 170 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~----~~i--~~g~~~~i~CP~~~C~~ 170 (478)
....|.+|.+. .+++.. .|-..||..|+..-+. ..| .+| +-.||. |..
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~---~W~C~~--C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENN---QWYCYI--CHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT---CCCCTT--TCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC---CCEeec--ccC
Confidence 35689999875 455544 8999999999997763 222 233 467888 654
No 238
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=34.55 E-value=52 Score=29.19 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.|+++.+ +|++.+.|+..|...+||.+..++.++.
T Consensus 166 kV~~l~~-MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 166 KIENLCA-MGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 3444433 4999999999999999999999988873
No 239
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.44 E-value=15 Score=30.65 Aligned_cols=27 Identities=30% Similarity=0.751 Sum_probs=0.0
Q ss_pred ccccccccc-ccCCceec--CCCCccchhh
Q 011726 118 MCDICMEEV-AGDKATKM--DCGHCFCNDC 144 (478)
Q Consensus 118 ~C~IC~e~~-~~~~~~~l--~CgH~fC~~C 144 (478)
.|.+|..++ .....-.. .|.|.+|..|
T Consensus 57 ~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 57 RCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp BCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred cccccCCCcccccCCCCCCCCCCccccccc
No 240
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.35 E-value=13 Score=34.88 Aligned_cols=24 Identities=25% Similarity=0.715 Sum_probs=17.4
Q ss_pred cCCCCCCCCccc--cCCCCceEe-ccc
Q 011726 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (478)
Q Consensus 277 k~CP~C~~~IeK--~~GCnhm~C-~C~ 300 (478)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 799999999987 456555555 354
No 241
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=33.71 E-value=13 Score=34.73 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=17.6
Q ss_pred cCCCCCCCCccc--cCCCCceEe-ccc
Q 011726 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (478)
Q Consensus 277 k~CP~C~~~IeK--~~GCnhm~C-~C~ 300 (478)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 689999999987 466555566 354
No 242
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.68 E-value=14 Score=34.47 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=23.7
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceeccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~ 311 (478)
-.||-|..++. +-++- .|||.||-.|...|
T Consensus 182 l~CPIcl~~f~-----DPVts~~CGHsFcR~cI~~~ 212 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISRKCNHVFDRDGIQNY 212 (267)
T ss_dssp SBCTTTSSBCS-----SEEEESSSCCEEEHHHHHHH
T ss_pred eECcCccCccc-----CCeeeCCCCCcccHHHHHHH
Confidence 58999998875 34677 58889999998775
No 243
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.56 E-value=30 Score=26.07 Aligned_cols=36 Identities=25% Similarity=0.542 Sum_probs=24.2
Q ss_pred CccccccccccccccccCCc-e-ecCCCCccchhhHHH
Q 011726 112 PLSSTVMCDICMEEVAGDKA-T-KMDCGHCFCNDCWTE 147 (478)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~~-~-~l~CgH~fC~~C~~~ 147 (478)
+......|.+|...|..... . --.||..||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34455689999988753211 1 237999999999543
No 244
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=33.41 E-value=22 Score=28.56 Aligned_cols=30 Identities=23% Similarity=0.547 Sum_probs=20.8
Q ss_pred CcccCCCCCCCCceEEeccc---cceeeEec-CCccc
Q 011726 206 MVKWCPSTPHCGNAIRVEEV---EVCEVECA-CGAQF 238 (478)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~~---~~~~v~C~-C~~~f 238 (478)
.+.+|| .|++.+.+... ....+.|. |++.+
T Consensus 3 ~m~FCp---~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCI---ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCS---SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCc---CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 357898 79999887653 33457775 77764
No 245
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=33.31 E-value=64 Score=29.86 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.|.++.+ .|++.+.|+..|..++|+.+..++.++.
T Consensus 218 ~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 218 KIENLCA-AGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 3444433 3999999999999999999999998874
No 246
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=32.60 E-value=27 Score=26.22 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=25.8
Q ss_pred ccCCCCCCCCceEEeccccceeeEec-CCccccccccC
Q 011726 208 KWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLS 244 (478)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~ 244 (478)
..|| +|++.-.+-+.....|.|. ||...|.-=+.
T Consensus 33 VkCp---~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGG 67 (81)
T 2xzm_6 33 VKCA---QCQNIQMIFSNAQSTIICEKCSAILCKPTGG 67 (81)
T ss_dssp EECS---SSCCEEEEETTCSSCEECSSSCCEEEEECSS
T ss_pred eECC---CCCCeeEEEecCccEEEccCCCCEEeecCCC
Confidence 4798 8999877766666679996 99998865443
No 247
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=32.12 E-value=27 Score=31.28 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCchhhhhhcCC-CccCCCCCCCCccccccccccccccccCCceecCCCCccchhhHH
Q 011726 81 EKLLAVLVENGKESLFNEAGV-TVIDDADPMLPLSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWT 146 (478)
Q Consensus 81 e~l~e~~~~~~~~~~~~~~gl-~~~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~ 146 (478)
+.+++.+...+.+.+|.-..+ .+..+. ..+......|++|-+.+........ =|-..|.+|..
T Consensus 138 ~~~~~~il~~~~eelf~v~~v~~~~~p~--~~~~~~~~~C~~CGE~~~~~~~~~~-~g~~~C~~C~~ 201 (204)
T 2gvi_A 138 DPVLEWISSLEDEEIFEYREIDGFTFEP--VKKNGAKVRCDVCGEYTYEADAKLL-NGKPVCKPDYY 201 (204)
T ss_dssp HHHHHHHHHSCHHHHEEEEEESSCCCCC--CCCCCCEEECTTTCCEEEGGGCEEE-TTEEECHHHHH
T ss_pred HHHHHHHHhCChhHeEEEEEeeccCCCC--CCCCCCceECCCCCCchhhcceeee-CCcEEChhhhc
Confidence 344555555555777764444 322211 1122346889999999864443333 37889999975
No 248
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=31.47 E-value=22 Score=27.13 Aligned_cols=27 Identities=26% Similarity=0.850 Sum_probs=17.2
Q ss_pred cCCCCCCCC------ccccCCCCceEe-ccccce
Q 011726 277 KPCPKCHKP------VEKNGGCNLVSC-ICGQAF 303 (478)
Q Consensus 277 k~CP~C~~~------IeK~~GCnhm~C-~C~~~F 303 (478)
=.||.|+.. |.|..|=-++.| .||..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 478888765 233455556777 377666
No 249
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.23 E-value=22 Score=26.02 Aligned_cols=31 Identities=23% Similarity=0.539 Sum_probs=21.8
Q ss_pred ccccccccccccCC-cee-cCCCCccchhhHHH
Q 011726 117 VMCDICMEEVAGDK-ATK-MDCGHCFCNDCWTE 147 (478)
Q Consensus 117 ~~C~IC~e~~~~~~-~~~-l~CgH~fC~~C~~~ 147 (478)
..|.+|...|+... ..- -.||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 37999998875321 112 37999999999753
No 250
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.77 E-value=21 Score=25.56 Aligned_cols=25 Identities=20% Similarity=0.611 Sum_probs=11.5
Q ss_pred cCCCCCCCCccccCCCCceEec-cccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCI-CGQA 302 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~-C~~~ 302 (478)
-.|..|+..++...| .-|.|+ ||+.
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~~CG~R 47 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCRECGHR 47 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCSSSCCC
T ss_pred EECCCCCCeeecCCC-CceECCCCCcE
Confidence 345555555543322 235552 5543
No 251
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.62 E-value=87 Score=20.47 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.|..+.+ +|++...|+..|+..+ |++..++.++.
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 12 QLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 3555555 5899999999999997 99988887763
No 252
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=30.23 E-value=27 Score=28.47 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=21.4
Q ss_pred CcccCCCCCCCCceEEecc---ccceeeEec-CCccc
Q 011726 206 MVKWCPSTPHCGNAIRVEE---VEVCEVECA-CGAQF 238 (478)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~---~~~~~v~C~-C~~~f 238 (478)
.+.+|| .|++.+.+.. .....+.|. |++..
T Consensus 3 ~~~FCp---~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR---DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS---SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc---ccCccCcccccCcCCCCEEECCcCCCee
Confidence 357898 7999988654 334567886 88765
No 253
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=29.89 E-value=15 Score=22.86 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=11.1
Q ss_pred cccccccccccccc
Q 011726 114 SSTVMCDICMEEVA 127 (478)
Q Consensus 114 ~~~~~C~IC~e~~~ 127 (478)
++.|.||+|+..+.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 35699999998764
No 254
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide; transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Probab=29.88 E-value=1.8e+02 Score=23.76 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=15.4
Q ss_pred CCCceeeCHHHHHHHHHHHHHHHH
Q 011726 36 GSSTKVITRESLLAAQKEDLRRVM 59 (478)
Q Consensus 36 ~~~~~vl~~~~i~~~~~~~i~~v~ 59 (478)
......+|+-++....-....+++
T Consensus 51 r~t~p~lTRYElARIiG~RAlQLs 74 (127)
T 1qkl_A 51 RITTPYMTKYERARVLGTRALQIA 74 (127)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred cccCCCcCHHHHHHHHHHHHHHHh
Confidence 344556899888876665555444
No 255
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=29.86 E-value=22 Score=27.59 Aligned_cols=47 Identities=26% Similarity=0.561 Sum_probs=33.3
Q ss_pred ccccccccccccccCCceecCC-CCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHH
Q 011726 115 STVMCDICMEEVAGDKATKMDC-GHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~ 175 (478)
..+.|..|+-.. . -.+.| .|+.|..|+...+.. .=+||. |+..++..
T Consensus 27 G~~nCKsCWf~~--k--~LV~C~dHYLCl~CLtlmL~~--------SdrCpI--C~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFEN--K--GLVECNNHYLCLNCLTLLLSV--------SNRCPI--CKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCC--S--SEEECSSCEEEHHHHHHTCSS--------SSEETT--TTEECCCC
T ss_pred CcccChhhcccc--C--CeeeecchhhHHHHHHHHHhh--------ccCCcc--cCCcCCcc
Confidence 568899998653 2 22355 599999999887653 247988 88776543
No 256
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.74 E-value=51 Score=24.98 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=30.6
Q ss_pred ccCCCCCCCCceEEeccccceeeEec-CCccccccccCCCCCCCCc
Q 011726 208 KWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEAHSPCSC 252 (478)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~H~~~~C 252 (478)
..|| +|++.-.+-......|.|. |+...|.-=+..+...-.|
T Consensus 37 VkCp---~C~~~~~VFShA~t~V~C~~CgtvL~~PTGGKa~l~egc 79 (86)
T 3iz6_X 37 VKCQ---GCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGC 79 (86)
T ss_dssp EECT---TTCCEEEEETTCSSCCCCSSSCCCCSCCCSSSCCCSCBC
T ss_pred EECC---CCCCeeEEEecCCcEEEccCCCCEeecCCCCCEEecCCc
Confidence 5798 8999877666666679997 9999987666555444444
No 257
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.32 E-value=26 Score=29.90 Aligned_cols=31 Identities=16% Similarity=0.505 Sum_probs=22.4
Q ss_pred cccccccccccccc-CC--ceecCCCCccchhhH
Q 011726 115 STVMCDICMEEVAG-DK--ATKMDCGHCFCNDCW 145 (478)
Q Consensus 115 ~~~~C~IC~e~~~~-~~--~~~l~CgH~fC~~C~ 145 (478)
....|.+|..++.. .+ ..-..|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 35789999998642 12 223489999999995
No 258
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.80 E-value=29 Score=31.54 Aligned_cols=32 Identities=28% Similarity=0.712 Sum_probs=23.3
Q ss_pred cCCCCCCCCccccCCCCceEec-cccceecccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 310 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C~-C~~~FCw~C~~~ 310 (478)
..|+.|+...--. --.-.|+ ||.-||..|...
T Consensus 165 ~~C~~C~~~F~~~--~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVM--TRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTT--BCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCcc--ccccccCCCcCEeChhhcCC
Confidence 5799998766421 1235795 999999999864
No 259
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=27.63 E-value=22 Score=25.12 Aligned_cols=29 Identities=31% Similarity=0.701 Sum_probs=19.7
Q ss_pred CCcCCCCCCCCccccCCCCceEeccccceeccccccccCCCC
Q 011726 275 HTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHT 316 (478)
Q Consensus 275 ~~k~CP~C~~~IeK~~GCnhm~C~C~~~FCw~C~~~~~~~H~ 316 (478)
..+.||+|++..- ...|-.||++....|.
T Consensus 4 ~mr~C~~Cg~YTL-------------k~~CP~CG~~t~~ahP 32 (60)
T 2aus_D 4 RIRKCPKCGRYTL-------------KETCPVCGEKTKVAHP 32 (60)
T ss_dssp CCEECTTTCCEES-------------SSBCTTTCSBCEESSC
T ss_pred cceECCCCCCEEc-------------cccCcCCCCccCCCCC
Confidence 4578999987665 3456778887655553
No 260
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.87 E-value=1.4e+02 Score=21.46 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=32.4
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 52 KEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 52 ~~~i~~v~~~l-~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.+.+..+++++ .|........|...+++++..++.+..
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34566788888 799999999999999999999998774
No 261
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=26.73 E-value=92 Score=25.20 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.|.++.+ +|.+...|+..|+..+||++..++.++.
T Consensus 81 ~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 81 IVAIITS-MGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3556665 5999999999999999999999998884
No 262
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=26.67 E-value=20 Score=31.86 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=31.6
Q ss_pred HHHHHHHhcCchhhhhhcCCCccCCCCCCCCccccccccccccccccCCceecCCCCccchhhHH
Q 011726 82 KLLAVLVENGKESLFNEAGVTVIDDADPMLPLSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWT 146 (478)
Q Consensus 82 ~l~e~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~ 146 (478)
.+++.+.+ ..+.+|.-..+.+.....+.........|++|-+.+... |-..|++|..
T Consensus 130 ~~~~~il~-~~~elf~v~~v~~~~~~~p~~~~~~~~~C~~CGE~~~~~-------g~~~C~~C~~ 186 (191)
T 3d00_A 130 RLFKEIRE-AGPDILELRNVKLKPGFLEKKHKGKIVLCPQCREAYPAQ-------DGELCLSCQG 186 (191)
T ss_dssp HHHHHHHH-HGGGGEEEEEEECCGGGGCCCCCCCEEECTTTCCEEEGG-------GCSSCHHHHT
T ss_pred HHHHHHhC-CchheEEEEEeccccccCCCcCCcCCEECCcCCCChhhC-------CCcCCccccC
Confidence 34455554 335666543333221001111123678899999987532 8889999963
No 263
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=26.62 E-value=46 Score=20.58 Aligned_cols=16 Identities=25% Similarity=0.800 Sum_probs=12.5
Q ss_pred ccccccCCCCCCCCcc
Q 011726 238 FCFSCLSEAHSPCSCS 253 (478)
Q Consensus 238 fC~~C~~~~H~~~~C~ 253 (478)
.|+.|+...|....|.
T Consensus 2 ~C~~Cg~~GH~~~~C~ 17 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCR 17 (37)
T ss_dssp CBSSSCCSSCCTTTSS
T ss_pred cccccCCCCcchhhCc
Confidence 5889998888876665
No 264
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.58 E-value=91 Score=22.14 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=27.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcC-CChHHHHHHHHhc
Q 011726 55 LRRVMELLSLREHHARTLLIHYR-WDVEKLLAVLVEN 90 (478)
Q Consensus 55 i~~v~~~l~i~~~~a~~lL~~~~-W~~e~l~e~~~~~ 90 (478)
|..+.+ +|++...|...|++.+ ++++.-++.+++.
T Consensus 13 v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 13 LEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp HHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 445555 6999999988888765 5999999998864
No 265
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=25.80 E-value=1e+02 Score=24.17 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHH
Q 011726 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKL 83 (478)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l 83 (478)
++|.-|++..|++...|...|+..++|.-..
T Consensus 67 edi~lv~~q~~vs~~~A~~aL~~~~gDiv~A 97 (102)
T 1tr8_A 67 DDIELVMNQTGASREDATRALQETGGDLAEA 97 (102)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHH
Confidence 5678888999999999999999999996543
No 266
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=25.73 E-value=33 Score=25.83 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=26.0
Q ss_pred ccCCCCCCCCceEEeccccceeeEec-CCccccccccCCC
Q 011726 208 KWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEA 246 (478)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~ 246 (478)
..|| +|++.-.+-+.....|.|. ||...|.-=+..+
T Consensus 35 VkCp---~C~~~q~VFSha~t~V~C~~Cg~~L~~PTGGKa 71 (82)
T 3u5c_b 35 VKCP---GCLNITTVFSHAQTAVTCESCSTILCTPTGGKA 71 (82)
T ss_dssp EECT---TSCSCEEEESBCSSCCCCSSSCCCCEECCSSBC
T ss_pred EECC---CCCCeeEEEecCCeEEEccccCCEEeccCCCCe
Confidence 4788 8998877666555668996 9999887544433
No 267
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.47 E-value=2.2e+02 Score=27.73 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 011726 433 QHLFEDQQQQLEANV 447 (478)
Q Consensus 433 ~~~fe~~q~~le~~~ 447 (478)
.+..+.+|++|+...
T Consensus 178 ~e~ye~qqKQL~qv~ 192 (390)
T 1deq_A 178 LEDYKNQQKQLEQVI 192 (390)
T ss_pred HHHHHHHHHHHHhhh
Confidence 356777788877653
No 268
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=25.45 E-value=40 Score=25.68 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=22.5
Q ss_pred cccccccccccccCCc-e-ecCCCCccchhhHHH
Q 011726 116 TVMCDICMEEVAGDKA-T-KMDCGHCFCNDCWTE 147 (478)
Q Consensus 116 ~~~C~IC~e~~~~~~~-~-~l~CgH~fC~~C~~~ 147 (478)
...|.+|...|..... . --.||..||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4579999988753221 1 237999999999654
No 269
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=24.92 E-value=29 Score=31.95 Aligned_cols=22 Identities=27% Similarity=0.837 Sum_probs=13.3
Q ss_pred cCCCCCCC----CccccCCCCceEe-cccc
Q 011726 277 KPCPKCHK----PVEKNGGCNLVSC-ICGQ 301 (478)
Q Consensus 277 k~CP~C~~----~IeK~~GCnhm~C-~C~~ 301 (478)
-+||.|+. .+- ..| ++.| +||+
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~ 41 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCYVCEK 41 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEETTTCC
T ss_pred CcCCCCCCCCCceEe-CCC--CeecccCCC
Confidence 58999987 233 234 4666 4654
No 270
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=24.42 E-value=39 Score=29.66 Aligned_cols=72 Identities=14% Similarity=0.272 Sum_probs=40.8
Q ss_pred ccccccccccccCC----ceec-CCCCccchhhHHHHHH--HHHhc-CCcccccCCCcccCCccCHHHHHHHhcCCCchH
Q 011726 117 VMCDICMEEVAGDK----ATKM-DCGHCFCNDCWTEHFI--VKINE-GQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNL 188 (478)
Q Consensus 117 ~~C~IC~e~~~~~~----~~~l-~CgH~fC~~C~~~yi~--~~i~~-g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~ 188 (478)
..|+||...+..++ ++.. .|...|...|..-.-. ..+.+ .......||. |...-+.. ++..+. .++
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~--C~~~~~~~-~~~~~~---~el 76 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN--CTERHPAE-WRLALE---KEL 76 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT--TCCSSSCH-HHHHHH---HHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC--CCCCCCHH-HHHHHH---HHH
Confidence 46999988876554 5555 7888888888743211 11211 0012578998 87655443 555554 444
Q ss_pred HHHHHH
Q 011726 189 AEKFER 194 (478)
Q Consensus 189 ~~~y~~ 194 (478)
...+.+
T Consensus 77 ~~~l~~ 82 (183)
T 3lqh_A 77 QISLKQ 82 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 271
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=24.34 E-value=2.4e+02 Score=21.54 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhhhhcc-ceeeeeccCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCchHHHHHH
Q 011726 392 NGLYRLFRSRRVLSYS-YPFAFYMFGEELFKDEMTDEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYPDDKVMEIR 470 (478)
Q Consensus 392 ~a~~~l~~~r~~L~~s-y~~~yy~~~~~~~~~~~~~~~~~~~~~~fe~~q~~le~~~e~L~~~le~~~~~~~~~~~~~~k 470 (478)
+-+..|-+-||+||.- ||-. . -..+......+|.....|...++.|..-+..-.. ++..+|
T Consensus 21 eev~~lKq~RRtlKNRgyAq~------------C-R~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~-----e~d~~k 82 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQS------------C-RYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR-----ERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 3456777888999882 1111 0 0112345577888888888888888877775433 578889
Q ss_pred HHHhhcc
Q 011726 471 MQVINLS 477 (478)
Q Consensus 471 ~~~~~l~ 477 (478)
+++..|.
T Consensus 83 ~k~~~L~ 89 (90)
T 2wt7_B 83 VKSEKLA 89 (90)
T ss_dssp HHHHTTC
T ss_pred HHHHHhc
Confidence 8888875
No 272
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.09 E-value=1.5e+02 Score=29.68 Aligned_cols=89 Identities=12% Similarity=0.242 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh-hccccchhHHHHHHHHHHH-----hhhhhhc
Q 011726 333 AKKTERAKRELYRYMHYHNRYKAHTDSFKLESKLKETVLEKVSISEER-ESRLRDFSWVTNGLYRLFR-----SRRVLSY 406 (478)
Q Consensus 333 ~~~~~~~~~~l~ry~~y~~r~~~h~~s~~~~~~l~~~i~~k~~~~~~~-~~~~~~~~~l~~a~~~l~~-----~r~~L~~ 406 (478)
.....++...-.+|..|-+.-+.|..-++ .++...| .+++.|+.. ..+..+++.|+.++..-++ |-|.|.|
T Consensus 96 k~~~~q~~dndn~~~e~S~eLe~ri~yIK--~kVd~qi-~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y 172 (491)
T 1m1j_A 96 KPGLEGAQQLDENYGHVSTELRRRIVTLK--QRVATQV-NRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDY 172 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCC
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHh
Q ss_pred cceeeeeccCccccccccChHHHHHHHHHHHHHHHHHHHHH
Q 011726 407 SYPFAFYMFGEELFKDEMTDEEREIKQHLFEDQQQQLEANV 447 (478)
Q Consensus 407 sy~~~yy~~~~~~~~~~~~~~~~~~~~~~fe~~q~~le~~~ 447 (478)
..-.+..|.+|++|+...
T Consensus 173 -----------------------~VD~~~Ye~~QKqLeQv~ 190 (491)
T 1m1j_A 173 -----------------------QVDKEGYDNIQKHLTQAS 190 (491)
T ss_dssp -----------------------CCCTTTTHHHHHHHHHHT
T ss_pred -----------------------hhcHHHHHHHHHHHHHhh
No 273
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.98 E-value=35 Score=29.17 Aligned_cols=34 Identities=24% Similarity=0.585 Sum_probs=24.6
Q ss_pred ccccccccccccccCCceec---CCCCccchhhHHHHHHH
Q 011726 115 STVMCDICMEEVAGDKATKM---DCGHCFCNDCWTEHFIV 151 (478)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l---~CgH~fC~~C~~~yi~~ 151 (478)
....|.||.+. .+++.. +|...||..|+...+..
T Consensus 78 ~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 45678888874 344444 48899999999887654
No 274
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=23.73 E-value=32 Score=25.19 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=8.5
Q ss_pred CCCCCCCCccccCCCC
Q 011726 278 PCPKCHKPVEKNGGCN 293 (478)
Q Consensus 278 ~CP~C~~~IeK~~GCn 293 (478)
.|| |+...--.+|=-
T Consensus 6 ~C~-C~~~~~~~~~~k 20 (71)
T 1gh9_A 6 RCD-CGRALYSREGAK 20 (71)
T ss_dssp EET-TSCCEEEETTCS
T ss_pred ECC-CCCEEEEcCCCc
Confidence 577 776655444433
No 275
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=23.50 E-value=36 Score=23.91 Aligned_cols=34 Identities=38% Similarity=0.929 Sum_probs=26.5
Q ss_pred cCCCCCCCCccccCCCCceEe-ccccceecccccccc
Q 011726 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 312 (478)
Q Consensus 277 k~CP~C~~~IeK~~GCnhm~C-~C~~~FCw~C~~~~~ 312 (478)
-.|+.|.+.-. .+||-|. | .|+..||-.|++.+.
T Consensus 10 ~~C~iC~KTKF-ADG~Gh~-C~yCk~r~CaRCGg~v~ 44 (62)
T 2a20_A 10 PTCGICHKTKF-ADGCGHN-CSYCQTKFCARCGGRVS 44 (62)
T ss_dssp CCCSSSSCSCC-CSSCCEE-BTTTCCEECTTSEEEEE
T ss_pred chhhhhcccee-ccCCCcc-ccccCCeeecccCCEee
Confidence 57888876532 6788884 6 699999999998754
No 276
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.26 E-value=20 Score=24.47 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=8.4
Q ss_pred CCcCCCCCCCC
Q 011726 275 HTKPCPKCHKP 285 (478)
Q Consensus 275 ~~k~CP~C~~~ 285 (478)
+-+.||+|+..
T Consensus 13 ~k~iCpkC~a~ 23 (51)
T 3j21_g 13 KKYVCLRCGAT 23 (51)
T ss_dssp SEEECTTTCCE
T ss_pred CCccCCCCCCc
Confidence 34789999876
No 277
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=23.17 E-value=1.2e+02 Score=24.10 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=27.1
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 54 DLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 54 ~i~~v~~~l~i-~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
.|+.+.+ +|+ ....++..|+..+||+++.++.++.
T Consensus 69 qL~qL~e-MGF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 69 QLQQLRD-MGIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4444544 466 4578899999999999999999984
No 278
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=22.10 E-value=1.4e+02 Score=28.84 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 011726 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (478)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~~ 90 (478)
.+.+-+.+.+-....|...|+.+.|+.++-++.||+.
T Consensus 48 ~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~~ 84 (362)
T 4gew_A 48 KLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYGS 84 (362)
T ss_dssp HHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHHC
T ss_pred HHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcCC
Confidence 5777888999999999999999999999999999953
No 279
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=21.54 E-value=39 Score=21.22 Aligned_cols=17 Identities=29% Similarity=0.763 Sum_probs=12.0
Q ss_pred ccccccCCCCCCCCcch
Q 011726 238 FCFSCLSEAHSPCSCSM 254 (478)
Q Consensus 238 fC~~C~~~~H~~~~C~~ 254 (478)
.|+.|+..-|....|..
T Consensus 2 ~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp BCTTTCCBSSCTTTCCS
T ss_pred eeeccCCCCcccccCCC
Confidence 47888888887666653
No 280
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=21.51 E-value=20 Score=37.77 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHcCCChHHHHHHHH
Q 011726 52 KEDLRRVMELL---SLREHHARTLLIHYRWDVEKLLAVLV 88 (478)
Q Consensus 52 ~~~i~~v~~~l---~i~~~~a~~lL~~~~W~~e~l~e~~~ 88 (478)
.+.+..|.+.| .|+.......|.+|.+++++-+....
T Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~a~~~y~~d~~k~~~~~l 74 (592)
T 3mca_A 35 RSAVATVRETLLGVPISEKEIADTVWYYYFDVEKSVNYLL 74 (592)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHhccccCcHHHHHHHhhhhhcchhhHHHHhh
Confidence 33344445444 26666777788899999888544443
No 281
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=21.41 E-value=65 Score=27.22 Aligned_cols=33 Identities=18% Similarity=0.581 Sum_probs=20.8
Q ss_pred cccCCCCCCCCceEEeccccceeeEec-CCcccccc
Q 011726 207 VKWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFS 241 (478)
Q Consensus 207 ~~~CP~~p~C~~~i~~~~~~~~~v~C~-C~~~fC~~ 241 (478)
-+.|| .+.|+..+...... ....|. |+..+++.
T Consensus 118 ~~~c~-~~~cg~g~fma~h~-~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECS-NPTCGAGVFLANHK-DRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCC-STTSCSSSBEEECS-SCEEESSSSSCCEEC
T ss_pred cCcCC-CccCCCceEecccC-CCcccCCCceEEEec
Confidence 36899 58898743322211 136896 99988864
No 282
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=21.18 E-value=1.1e+02 Score=25.34 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=32.5
Q ss_pred CceeeCHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHc
Q 011726 38 STKVITRESLLAAQKED-LRRVMELLSLREHHARTLLIHY 76 (478)
Q Consensus 38 ~~~vl~~~~i~~~~~~~-i~~v~~~l~i~~~~a~~lL~~~ 76 (478)
....+++++|.+..-.+ |++++.-+|+++.++...|-.+
T Consensus 60 ~N~pIs~~ql~~~lG~~~l~~lA~q~Gl~~~~~~~~LA~~ 99 (135)
T 1z67_A 60 RNQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQ 99 (135)
T ss_dssp CCCCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHChHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34667999999988554 9999999999999998888544
No 283
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.49 E-value=39 Score=30.46 Aligned_cols=33 Identities=24% Similarity=0.670 Sum_probs=23.1
Q ss_pred cccccccccccccCC-cee-cCCCCccchhhHHHH
Q 011726 116 TVMCDICMEEVAGDK-ATK-MDCGHCFCNDCWTEH 148 (478)
Q Consensus 116 ~~~C~IC~e~~~~~~-~~~-l~CgH~fC~~C~~~y 148 (478)
...|.+|...|+... -.- -.||+.||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 368999988875321 122 379999999996643
No 284
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.39 E-value=1.9e+02 Score=19.89 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=23.4
Q ss_pred CC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 011726 63 SL-REHHARTLLIHYRWDVEKLLAVLVE 89 (478)
Q Consensus 63 ~i-~~~~a~~lL~~~~W~~e~l~e~~~~ 89 (478)
|. .......+|+..+||+++.++.+..
T Consensus 20 GF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 20 GFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp TCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 54 6777899999999999999998874
No 285
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=20.28 E-value=38 Score=21.17 Aligned_cols=25 Identities=40% Similarity=1.044 Sum_probs=16.4
Q ss_pred CCCCCCCC---ccccCCCCceEec-cccc
Q 011726 278 PCPKCHKP---VEKNGGCNLVSCI-CGQA 302 (478)
Q Consensus 278 ~CP~C~~~---IeK~~GCnhm~C~-C~~~ 302 (478)
.||.|+.| +.+..+=-.+.|. ||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 58888875 3445565667784 8764
No 286
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=20.09 E-value=37 Score=23.96 Aligned_cols=13 Identities=31% Similarity=0.812 Sum_probs=9.7
Q ss_pred CCcCCCCCCCCcc
Q 011726 275 HTKPCPKCHKPVE 287 (478)
Q Consensus 275 ~~k~CP~C~~~Ie 287 (478)
+.-.||+|+.+..
T Consensus 29 ~l~~c~~cGe~~~ 41 (60)
T 3v2d_5 29 TLVPCPECKAMKP 41 (60)
T ss_dssp CCEECTTTCCEEC
T ss_pred ceeECCCCCCeec
Confidence 3467888888766
No 287
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=20.01 E-value=1.3e+02 Score=24.81 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=30.7
Q ss_pred ccCCCcccCC---ccCHHHHHHHhcCCCchHHHHHHHHHHHHHHhhCCCcccCCCCCCCCceEE
Q 011726 161 IRCMAHKCNA---ICDEAVVRNLVSKKHPNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIR 221 (478)
Q Consensus 161 i~CP~~~C~~---~~~~~~i~~ll~~~~~e~~~~y~~~~~~~~v~~~~~~~~CP~~p~C~~~i~ 221 (478)
..||. |+. .+....++.+|. ++... +.. ..+..|+ +|+|.-+..
T Consensus 2 ~~CP~--Cg~~G~~V~~~Tvk~ll~---~~~~~----------~~~-~~y~~C~-~~~C~VvYf 48 (130)
T 2hu9_A 2 MRCPE--CSTEGWRVLPLTVGAHVK---EGLWS----------KIK-GDFYFCS-LESCEVVYF 48 (130)
T ss_dssp CBCTT--TCCBCEEECHHHHHHHBC---GGGGG----------GCC-SCEEECC-CTTCSEEEE
T ss_pred CcCCC--CCCcCcCccHHHHHHHhh---HHHhc----------cCC-CCEEeEC-CCCCCEEEE
Confidence 35888 775 678889999887 43321 233 4678999 699986655
Done!