BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011728
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GFI|A Chain A, Crystal Structure Of The Phytase From D. Castellii At 2.3
A
pdb|2GFI|B Chain B, Crystal Structure Of The Phytase From D. Castellii At 2.3
A
Length = 458
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 125/317 (39%), Gaps = 29/317 (9%)
Query: 53 SEIPDGCTPIHLNLVARHGTRAPTKKRMRELERLADHLEVLIREAKEKGSSLQK-----V 107
++IPD CT + L +RHG R P+ ++ + + + L K + + L V
Sbjct: 53 TDIPDQCTLEQVQLFSRHGERYPSTGSGKKYKAVYEKLMSYNGTFKGELAFLNDDYEYFV 112
Query: 108 PG--WLQGWKSPWQGKLKGGELISKGEDELYDLGIRIREKYPDLFSEEYHPDVYPIKATQ 165
P +L+ SP K + I G + GI R KY +LF D P+ +
Sbjct: 113 PDSVYLEKETSP-----KNSDSIYAGTTDAMKHGIAFRTKYGELFDTN---DTLPVFTSN 164
Query: 166 VPRASASAVAFGMGLFNERGTLGPGRHRAFAVTSESRASDIKLRFHDCCDNYKDFRISQA 225
R ++ F G + + + + ++ A+ + R D C NY + + A
Sbjct: 165 SGRVYQTSQYFARGFMGDDFSNDTVKTNIISEDADMGANSLTPR--DGCFNYNE-NANTA 221
Query: 226 PAVERLKEPILDEMTSSIARRYELNFTRQDVSSLWFLCKQEASLLDITDQACGLFSPSEV 285
E E + + A LN T DVS+L+ C E ++ + C +F+ E
Sbjct: 222 IVDEYTTEYLTKALNRFKASNPGLNITEDDVSNLFGYCAYELNVKGAS-PMCDIFTNEEF 280
Query: 286 ALLEWTDDLEVFILKGYGKSLNYRMGVPLLEDIVQSMEQAINAKEEKHTSGNYEKARLRF 345
++ DL+ + G ++ +G LL S+E + K E K L F
Sbjct: 281 IQYSYSVDLDDYYSNSAGNNMTRVIGSTLLN---ASLELLNHDKNEN-------KIWLSF 330
Query: 346 AHAETVIPFTCLLGLFL 362
H + F +G+ +
Sbjct: 331 THDTDIEIFHSAIGILI 347
>pdb|1IHP|A Chain A, Structure Of Phosphomonoesterase
Length = 438
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 82/405 (20%), Positives = 148/405 (36%), Gaps = 61/405 (15%)
Query: 54 EIPDGCTPIHLNLVARHGTRAPTKKRMRELERLADHLEVLIREAKEKGSSLQKVPGWLQG 113
E+P GC +++RHG R PT + ++ LI E ++ ++ +L+
Sbjct: 37 EVPAGCRVTFAQVLSRHGARYPTDSKGKK-------YSALIEEIQQNATTFDGKYAFLKT 89
Query: 114 WKSPWQGKLKGGELISKGEDELYDLGIRIREKYPDLFSEEYHPDVYP-IKATQVPRASAS 172
+ L +L GE EL + GI+ ++Y E ++ P I+++ R AS
Sbjct: 90 YNY----SLGADDLTPFGEQELVNSGIKFYQRY-----ESLTRNIVPFIRSSGSSRVIAS 140
Query: 173 AVAFGMG-----LFNERGTLGPGRHRAFAVTSESRASDIKLRFHDCCDNYKDFRISQAPA 227
F G L + R G + V SE+ +S+ L C ++D ++
Sbjct: 141 GKKFIEGFQSTKLKDPRAQPGQSSPKIDVVISEASSSNNTLD-PGTCTVFEDSELA---- 195
Query: 228 VERLKEPILDEMTSSIARRYE-----LNFTRQDVSSLWFLCKQEASLLDITDQA----CG 278
+ ++ SI +R E + T +V+ L +C + D C
Sbjct: 196 -DTVEANFTATFVPSIRQRLENDLSGVTLTDTEVTYLMDMCSFDTISTSTVDTKLSPFCD 254
Query: 279 LFSPSEVALLEWTDDLEVFILKGYGKSLNYRMGVPLLEDIVQSMEQAINAKEEKHTSGNY 338
LF+ E ++ L+ + G G L GV +++ + ++ TS N+
Sbjct: 255 LFTHDEWINYDYLQSLKKYYGHGAGNPLGPTQGVGYANELIARL---THSPVHDDTSSNH 311
Query: 339 ------------EKARLRFAHAETVIPFTCLLGLFLERSEFQQIXXXXXXXXXXXXXXSR 386
F+H +I LGL+ + + + S
Sbjct: 312 TLDSSPATFPLNSTLYADFSHDNGIISILFALGLY---NGTKPLSTTTVENITQTDGFSS 368
Query: 387 NWRGSILAPFTGNNMLVLYSCPANSSDKYFVQVLHNEHPTPMPGC 431
W PF + + C A + V+VL N+ P+ GC
Sbjct: 369 AWT----VPFASRLYVEMMQCQAEQ--EPLVRVLVNDRVVPLHGC 407
>pdb|3K4P|A Chain A, Aspergillus Niger Phytase
pdb|3K4P|B Chain B, Aspergillus Niger Phytase
pdb|3K4Q|A Chain A, Aspergillus Niger Phytase In Complex With Myo-Inositol
Hexakis Sulfate
pdb|3K4Q|B Chain B, Aspergillus Niger Phytase In Complex With Myo-Inositol
Hexakis Sulfate
Length = 444
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 82/405 (20%), Positives = 148/405 (36%), Gaps = 61/405 (15%)
Query: 54 EIPDGCTPIHLNLVARHGTRAPTKKRMRELERLADHLEVLIREAKEKGSSLQKVPGWLQG 113
E+P GC +++RHG R PT + ++ LI E ++ ++ +L+
Sbjct: 43 EVPAGCRVTFAQVLSRHGARYPTDSKGKK-------YSALIEEIQQNATTFDGKYAFLKT 95
Query: 114 WKSPWQGKLKGGELISKGEDELYDLGIRIREKYPDLFSEEYHPDVYP-IKATQVPRASAS 172
+ L +L GE EL + GI+ ++Y E ++ P I+++ R AS
Sbjct: 96 YNY----SLGADDLTPFGEQELVNSGIKFYQRY-----ESLTRNIVPFIRSSGSSRVIAS 146
Query: 173 AVAFGMG-----LFNERGTLGPGRHRAFAVTSESRASDIKLRFHDCCDNYKDFRISQAPA 227
F G L + R G + V SE+ +S+ L C ++D ++
Sbjct: 147 GKKFIEGFQSTKLKDPRAQPGQSSPKIDVVISEASSSNNTLD-PGTCTVFEDSELA---- 201
Query: 228 VERLKEPILDEMTSSIARRYE-----LNFTRQDVSSLWFLCKQEASLLDITDQA----CG 278
+ ++ SI +R E + T +V+ L +C + D C
Sbjct: 202 -DTVEANFTATFVPSIRQRLENDLSGVTLTDTEVTYLMDMCSFDTISTSTVDTKLSPFCD 260
Query: 279 LFSPSEVALLEWTDDLEVFILKGYGKSLNYRMGVPLLEDIVQSMEQAINAKEEKHTSGNY 338
LF+ E ++ L+ + G G L GV +++ + ++ TS N+
Sbjct: 261 LFTHDEWINYDYLQSLKKYYGHGAGNPLGPTQGVGYANELIARL---THSPVHDDTSSNH 317
Query: 339 ------------EKARLRFAHAETVIPFTCLLGLFLERSEFQQIXXXXXXXXXXXXXXSR 386
F+H +I LGL+ + + + S
Sbjct: 318 TLDSSPATFPLNSTLYADFSHDNGIISILFALGLY---NGTKPLSTTTVENITQTDGFSS 374
Query: 387 NWRGSILAPFTGNNMLVLYSCPANSSDKYFVQVLHNEHPTPMPGC 431
W PF + + C A + V+VL N+ P+ GC
Sbjct: 375 AWT----VPFASRLYVEMMQCQAE--QEPLVRVLVNDRVVPLHGC 413
>pdb|1SK9|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
Phytase Revealing Its Enzymatic Dynamics
pdb|1SKA|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
Phytase Revealing Its Enzymatic Dynamics
pdb|1SKB|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
Phytase Revealing Its Enzymatic Dynamics
pdb|1SK8|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
Phytase Revealing Its Enzymatic Dynamics
Length = 439
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 80/407 (19%), Positives = 152/407 (37%), Gaps = 62/407 (15%)
Query: 53 SEIPDGCTPIHLNLVARHGTRAPTKKRMRELERLADHLEVLIREAKEKGSSLQKVPGWLQ 112
S++P C + +++RHG R PT + ++ ++L ++ + K K + L+
Sbjct: 38 SKLPKDCRITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKT------ 91
Query: 113 GWKSPWQGKLKGGELISKGEDELYDLGIRIREKYPDLFSEEYHPDVYP-IKATQVPRASA 171
+ L +L GE +L + GI+ ++Y L V P I+A+ R A
Sbjct: 92 -----YNYTLGADDLTPFGEQQLVNSGIKFYQRYKALARS-----VVPFIRASGSDRVIA 141
Query: 172 SAVAFGMGLFNERGTLGPGRHRAFAVTSESRASDIKLRFHDCCDNYKDFRISQAPAVERL 231
S F G F + PG A + A + + + +N D + +L
Sbjct: 142 SGEKFIEG-FQQAKLADPG-----ATNRAAPAISVIIPESETFNNTLDHGVCTKFEASQL 195
Query: 232 KEPILDEMTS----SIARRYE-----LNFTRQDVSSLWFLCKQEASLLDITDQA-----C 277
+ + T+ I R E + T +DV SL +C + ++ +D + C
Sbjct: 196 GDEVAANFTALFAPDIRARAEKHLPGVTLTDEDVVSLMDMCSFD-TVARTSDASQLSPFC 254
Query: 278 GLFSPSEVALLEWTDDLEVFILKGYGKSLNYRMGVPLLEDIVQSMEQAINAKEEKHTSGN 337
LF+ +E + L + G G L G+ +++ + + + + HTS N
Sbjct: 255 QLFTHNEWKKYNYLQSLGKYYGYGAGNPLGPAQGIGFTNELIARLTR---SPVQDHTSTN 311
Query: 338 Y------------EKARLRFAHAETVIPFTCLLGLFLERSEFQQIXXXXXXXXXXXXXXS 385
+ F+H +++ LGL+ + + + S
Sbjct: 312 STLVSNPATFPLNATMYVDFSHDNSMVSIFFALGLY---NGTEPLSRTSVESAKELDGYS 368
Query: 386 RNWRGSILAPFTGNNMLVLYSCPANSSDKYFVQVLHNEHPTPMPGCN 432
+W + PF C S + V+ L N+ P+ GC+
Sbjct: 369 ASW----VVPFGARAYFETMQC--KSEKEPLVRALINDRVVPLHGCD 409
>pdb|1QWO|A Chain A, Crystal Structure Of A Phosphorylated Phytase From
Aspergillus Fumigatus, Revealing The Structural Basis
For Its Heat Resilience And Catalytic Pathway
Length = 442
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 79/407 (19%), Positives = 151/407 (37%), Gaps = 62/407 (15%)
Query: 53 SEIPDGCTPIHLNLVARHGTRAPTKKRMRELERLADHLEVLIREAKEKGSSLQKVPGWLQ 112
S++P C + +++R G R PT + ++ ++L ++ + K K + L+
Sbjct: 41 SKLPKDCRITLVQVLSRXGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKT------ 94
Query: 113 GWKSPWQGKLKGGELISKGEDELYDLGIRIREKYPDLFSEEYHPDVYP-IKATQVPRASA 171
+ L +L GE +L + GI+ ++Y L V P I+A+ R A
Sbjct: 95 -----YNYTLGADDLTPFGEQQLVNSGIKFYQRYKALARS-----VVPFIRASGSDRVIA 144
Query: 172 SAVAFGMGLFNERGTLGPGRHRAFAVTSESRASDIKLRFHDCCDNYKDFRISQAPAVERL 231
S F G F + PG A + A + + + +N D + +L
Sbjct: 145 SGEKFIEG-FQQAKLADPG-----ATNRAAPAISVIIPESETFNNTLDHGVCTKFEASQL 198
Query: 232 KEPILDEMTS----SIARRYE-----LNFTRQDVSSLWFLCKQEASLLDITDQA-----C 277
+ + T+ I R E + T +DV SL +C + ++ +D + C
Sbjct: 199 GDEVAANFTALFAPDIRARAEKHLPGVTLTDEDVVSLMDMCSFD-TVARTSDASQLSPFC 257
Query: 278 GLFSPSEVALLEWTDDLEVFILKGYGKSLNYRMGVPLLEDIVQSMEQAINAKEEKHTSGN 337
LF+ +E + L + G G L G+ +++ + + + + HTS N
Sbjct: 258 QLFTHNEWKKYNYLQSLGKYYGYGAGNPLGPAQGIGFTNELIARLTR---SPVQDHTSTN 314
Query: 338 Y------------EKARLRFAHAETVIPFTCLLGLFLERSEFQQIXXXXXXXXXXXXXXS 385
+ F+H +++ LGL+ + + + S
Sbjct: 315 STLVSNPATFPLNATMYVDFSHDNSMVSIFFALGLY---NGTEPLSRTSVESAKELDGYS 371
Query: 386 RNWRGSILAPFTGNNMLVLYSCPANSSDKYFVQVLHNEHPTPMPGCN 432
+W + PF C S + V+ L N+ P+ GC+
Sbjct: 372 ASW----VVPFGARAYFETMQC--KSEKEPLVRALINDRVVPLHGCD 412
>pdb|1RPA|A Chain A, Three-Dimensional Structure Of Rat Acid Phosphatase In
Complex With L(+) Tartrate
pdb|1RPT|A Chain A, Crystal Structures Of Rat Acid Phosphatase Complexed With
The Transitions State Analogs Vanadate And Molybdate:
Implications For The Reaction Mechanism
Length = 342
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 89/408 (21%), Positives = 155/408 (37%), Gaps = 85/408 (20%)
Query: 64 LNLVARHGTRAPTKKRMRELERLADHLEVLIREAKEKGSSLQKVPGWLQGWKSPWQGKLK 123
+ LV RHG R P +E + ++ S W QG+
Sbjct: 6 VTLVFRHGDRGP--------------IETFPNDPIKESS-------WPQGF--------- 35
Query: 124 GGELISKGEDELYDLGIRIREKYPDLFSEEYHPDVYPIKATQVPRASASAVAFGMGLFNE 183
G+L G + Y+LG IR +Y + Y D I++T V R SA+ LF
Sbjct: 36 -GQLTKWGMGQHYELGSYIRRRYGRFLNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPP 94
Query: 184 RG-TLGPGR--HRAFAVTSESRASD--IKLRFHDCCDNYKDFRISQAPAVERLKEPILDE 238
G ++ R + V + S + D + L F D C +++ + + E LK L
Sbjct: 95 EGNSIWNPRLLWQPIPVHTVSLSEDRLLYLPFRD-CPRFQELKSETLKSEEFLKR--LQP 151
Query: 239 MTSSIARRYELN-FTRQDVSSLWFLCKQEASLLDITDQACGLFSPSEVALLEWTDDLEVF 297
S I L+ F QD+ +W + + ++ +E A+ + + E+
Sbjct: 152 YKSFIDTLPSLSGFEDQDLFEIWSRLYDPLYCESVHNFTLPTWA-TEDAMTKLKELSELS 210
Query: 298 ILKGYG----KSLNYRMGVPLLEDIVQSMEQAINAKEEKHTSGNYEKARLRFAHAETVIP 353
+L YG K + G L+ +I+++M+ A ++ + K + AH TV
Sbjct: 211 LLSLYGIHKQKEKSRLQGGVLVNEILKNMKLATQPQKAR-------KLIMYSAHDTTVSG 263
Query: 354 FTCLLGLFLERSEFQQIXXXXXXXXXXXXXXSRNWRGSILAPFTGNNMLVLYS-CPANSS 412
L ++ +L P+ +++ LY +
Sbjct: 264 LQMALDVY----------------------------NGLLPPYASCHIMELYQDNGGHFV 295
Query: 413 DKYFVQVLHNE-HPTPMPGCNGTDFCPFDVFKERIVAPHLKYDYNTLC 459
+ Y+ NE +P +PGC T CP + F E ++ P + D+ T C
Sbjct: 296 EMYYRNETQNEPYPLTLPGC--THSCPLEKFAE-LLDPVIPQDWATEC 340
>pdb|1ND5|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
Length = 354
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 33/123 (26%)
Query: 64 LNLVARHGTRAPTKKRMRELERLADHLEVLIREAKEKGSSLQKVPGWLQGWKSPWQGKLK 123
+ LV RHG R+P ++ + ++ S W QG+
Sbjct: 6 VTLVFRHGDRSP--------------IDTFPTDPIKESS-------WPQGF--------- 35
Query: 124 GGELISKGEDELYDLGIRIREKYPDLFSEEY-HPDVYPIKATQVPRASASAVAFGMGLFN 182
G+L G ++ Y+LG IR++Y +E Y H VY I++T V R SA+ LF
Sbjct: 36 -GQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVY-IRSTDVDRTLMSAMTNLAALFP 93
Query: 183 ERG 185
G
Sbjct: 94 PEG 96
>pdb|2HPA|A Chain A, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|B Chain B, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|C Chain C, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|D Chain D, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|1CVI|A Chain A, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|B Chain B, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|C Chain C, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|D Chain D, Crystal Structure Of Human Prostatic Acid Phosphatase
Length = 342
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 33/124 (26%)
Query: 64 LNLVARHGTRAPTKKRMRELERLADHLEVLIREAKEKGSSLQKVPGWLQGWKSPWQGKLK 123
+ LV RHG R+P ++ + ++ S W QG+
Sbjct: 6 VTLVFRHGDRSP--------------IDTFPTDPIKESS-------WPQGF--------- 35
Query: 124 GGELISKGEDELYDLGIRIREKYPDLFSEEY-HPDVYPIKATQVPRASASAVAFGMGLFN 182
G+L G ++ Y+LG IR++Y +E Y H VY I++T V R SA+ LF
Sbjct: 36 -GQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVY-IRSTDVDRTLMSAMTNLAALFP 93
Query: 183 ERGT 186
G
Sbjct: 94 PEGV 97
>pdb|1R7A|A Chain A, Sucrose Phosphorylase From Bifidobacterium Adolescentis
pdb|1R7A|B Chain B, Sucrose Phosphorylase From Bifidobacterium Adolescentis
Length = 504
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 189 PGRHRAFAVTSESRASDIKL-RFHDCCDNYKDFRISQAPAVERLKEPILDEMTSSIARRY 247
PG + + V + + +D++L R + + S A E LK P++ + + R
Sbjct: 372 PGVPQVYYVGALAGKNDMELLRKTNNGRDINRHYYSTAEIDENLKRPVVKALNALAKFRN 431
Query: 248 ELN-------FTRQDVSSLWFLCKQEASLLDIT---DQACGLFSPSEVALLEWTD 292
EL+ +T D +S+ F + E S +T + G+ + + VA+LEW D
Sbjct: 432 ELDAFDGTFSYTTDDDTSISFTWRGETSQATLTFEPKRGLGVDNTTPVAMLEWED 486
>pdb|2GDU|A Chain A, E232q Mutant Of Sucrose Phosphorylase From Bifidobacterium
Adolescentis In Complex With Sucrose
pdb|2GDU|B Chain B, E232q Mutant Of Sucrose Phosphorylase From Bifidobacterium
Adolescentis In Complex With Sucrose
Length = 504
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 189 PGRHRAFAVTSESRASDIKL-RFHDCCDNYKDFRISQAPAVERLKEPILDEMTSSIARRY 247
PG + + V + + +D++L R + + S A E LK P++ + + R
Sbjct: 372 PGVPQVYYVGALAGKNDMELLRKTNNGRDINRHYYSTAEIDENLKRPVVKALNALAKFRN 431
Query: 248 ELN-------FTRQDVSSLWFLCKQEASLLDIT---DQACGLFSPSEVALLEWTD 292
EL+ +T D +S+ F + E S +T + G+ + + VA+LEW D
Sbjct: 432 ELDAFDGTFSYTTDDDTSISFTWRGETSQATLTFEPKRGLGVDNTTPVAMLEWED 486
>pdb|2GDV|A Chain A, Sucrose Phosphorylase From Bifidobacterium Adolescentis
Reacted With Sucrose
pdb|2GDV|B Chain B, Sucrose Phosphorylase From Bifidobacterium Adolescentis
Reacted With Sucrose
Length = 504
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 189 PGRHRAFAVTSESRASDIKL-RFHDCCDNYKDFRISQAPAVERLKEPILDEMTSSIARRY 247
PG + + V + + +D++L R + + S A E LK P++ + + R
Sbjct: 372 PGVPQVYYVGALAGKNDMELLRKTNNGRDINRHYYSTAEIDENLKRPVVKALNALAKFRN 431
Query: 248 ELN-------FTRQDVSSLWFLCKQEASLLDIT---DQACGLFSPSEVALLEWTD 292
EL+ +T D +S+ F + E S +T + G+ + + VA+LEW D
Sbjct: 432 ELDAFDGTFSYTTDDDTSISFTWRGETSQATLTFEPKRGLGVDNTTPVAMLEWED 486
>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1333
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
Query: 124 GGELISKGEDELYDLGIRIREKYPDLFSEEYHPDVYPIKATQVPRASASAVAFGMGLFNE 183
GE G +E +D + + E +P LFS+ VP A A+ + M LF
Sbjct: 563 AGEFEFSGRNEKWDQALYLSEHFPALFSD-------------VPLAGANTIIAIMRLFTP 609
Query: 184 RGTL 187
+G L
Sbjct: 610 QGFL 613
>pdb|3FQI|A Chain A, Crystal Structure Of The Mouse Dom3z
pdb|3FQJ|A Chain A, Crystal Structure Of The Mouse Dom3z In Complex With Gdp
Length = 417
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 84 ERLADHLEVLIREAKEKGSSLQKVPGWLQGWKSPWQGKL 122
E + + L+ L+R E + L+ PGWL G W+G L
Sbjct: 117 EEVQERLDHLLRWVLEHRNQLEGGPGWLAGATVTWRGHL 155
>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1333
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
Query: 124 GGELISKGEDELYDLGIRIREKYPDLFSEEYHPDVYPIKATQVPRASASAVAFGMGLFNE 183
GE G +E +D + + E +P LFS+ VP A A+ + M LF
Sbjct: 563 AGEFEFSGRNEKWDQSLYLSEHFPALFSD-------------VPLAGANTIIAIMRLFTP 609
Query: 184 RGTL 187
+G L
Sbjct: 610 QGFL 613
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,478,097
Number of Sequences: 62578
Number of extensions: 541500
Number of successful extensions: 1180
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 15
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)