Query 011729
Match_columns 478
No_of_seqs 120 out of 1325
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00013 groEL chaperonin GroE 100.0 1.8E-96 4E-101 791.3 49.6 460 5-478 52-517 (542)
2 PRK12852 groEL chaperonin GroE 100.0 1.8E-96 4E-101 793.6 49.0 456 5-478 53-518 (545)
3 PRK12849 groEL chaperonin GroE 100.0 2.8E-96 6E-101 789.9 48.9 455 5-478 52-516 (542)
4 cd03344 GroEL GroEL_like type 100.0 8.6E-96 2E-100 783.8 49.9 459 5-478 50-514 (520)
5 PTZ00114 Heat shock protein 60 100.0 5.1E-96 1E-100 791.1 48.4 456 5-478 64-533 (555)
6 PRK14104 chaperonin GroEL; Pro 100.0 4.6E-96 1E-100 788.8 47.3 456 5-478 53-518 (546)
7 TIGR02348 GroEL chaperonin Gro 100.0 1.5E-95 3E-100 783.2 49.4 459 5-478 51-515 (524)
8 CHL00093 groEL chaperonin GroE 100.0 2.5E-95 5E-100 782.2 47.1 458 5-478 52-518 (529)
9 PRK12850 groEL chaperonin GroE 100.0 4.2E-95 9E-100 781.7 48.5 459 5-478 53-517 (544)
10 PRK12851 groEL chaperonin GroE 100.0 1E-94 2.3E-99 778.2 48.4 459 5-478 53-517 (541)
11 PLN03167 Chaperonin-60 beta su 100.0 1.4E-94 3E-99 782.2 46.6 459 5-478 108-574 (600)
12 KOG0356 Mitochondrial chaperon 100.0 1.2E-84 2.7E-89 666.1 33.3 454 7-477 68-529 (550)
13 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2.6E-78 5.7E-83 645.1 34.9 395 5-478 54-476 (484)
14 TIGR02347 chap_CCT_zeta T-comp 100.0 3E-77 6.5E-82 642.4 40.0 401 5-478 58-519 (531)
15 cd03343 cpn60 cpn60 chaperonin 100.0 4.4E-77 9.5E-82 641.7 39.8 401 5-478 57-510 (517)
16 TIGR02339 thermosome_arch ther 100.0 7.9E-77 1.7E-81 639.5 39.6 401 5-478 58-513 (519)
17 COG0459 GroL Chaperonin GroEL 100.0 1.3E-78 2.9E-83 646.3 23.2 432 6-478 54-507 (524)
18 TIGR02342 chap_CCT_delta T-com 100.0 1.6E-76 3.5E-81 636.3 39.2 407 5-478 51-510 (517)
19 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.3E-76 5E-81 636.8 39.1 406 5-478 50-519 (527)
20 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.8E-76 4E-81 636.4 37.3 408 5-478 50-509 (515)
21 TIGR02340 chap_CCT_alpha T-com 100.0 6.8E-76 1.5E-80 634.0 38.8 406 5-478 54-523 (536)
22 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.3E-75 2.8E-80 630.9 38.4 401 5-478 65-521 (526)
23 TIGR02343 chap_CCT_epsi T-comp 100.0 1.9E-75 4.1E-80 629.4 38.6 401 5-478 69-525 (532)
24 cd03340 TCP1_eta TCP-1 (CTT or 100.0 5.6E-75 1.2E-79 625.6 40.1 404 5-478 58-513 (522)
25 TIGR02344 chap_CCT_gamma T-com 100.0 3.9E-75 8.5E-80 627.2 38.1 401 5-478 58-515 (525)
26 TIGR02346 chap_CCT_theta T-com 100.0 3.3E-75 7.2E-80 627.3 34.1 400 5-478 60-513 (531)
27 TIGR02345 chap_CCT_eta T-compl 100.0 1.2E-74 2.7E-79 622.4 38.5 404 5-478 59-513 (522)
28 cd03336 TCP1_beta TCP-1 (CTT o 100.0 5.8E-74 1.2E-78 616.6 40.5 400 5-478 57-507 (517)
29 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4.8E-74 1E-78 612.1 34.6 384 5-478 58-474 (480)
30 PTZ00212 T-complex protein 1 s 100.0 5.1E-74 1.1E-78 618.7 34.3 400 5-478 69-519 (533)
31 TIGR02341 chap_CCT_beta T-comp 100.0 3.1E-73 6.7E-78 610.5 36.5 400 5-478 58-508 (519)
32 KOG0361 Chaperonin complex com 100.0 8.7E-74 1.9E-78 561.9 24.3 403 6-478 63-516 (543)
33 cd00309 chaperonin_type_I_II c 100.0 6.4E-72 1.4E-76 594.4 39.3 384 5-478 50-459 (464)
34 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.2E-71 2.5E-76 592.6 37.1 388 5-478 50-465 (472)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 4.1E-67 8.9E-72 559.7 35.0 401 5-478 31-477 (485)
36 KOG0363 Chaperonin complex com 100.0 1.2E-66 2.6E-71 508.7 28.7 399 6-478 63-512 (527)
37 KOG0358 Chaperonin complex com 100.0 6.9E-67 1.5E-71 512.5 23.5 413 6-478 69-527 (534)
38 KOG0360 Chaperonin complex com 100.0 1.2E-59 2.5E-64 472.8 22.5 404 6-478 62-529 (545)
39 KOG0359 Chaperonin complex com 100.0 6.1E-59 1.3E-63 463.1 21.7 400 5-477 59-507 (520)
40 KOG0364 Chaperonin complex com 100.0 1.4E-56 3E-61 446.8 21.0 400 6-478 62-514 (527)
41 KOG0362 Chaperonin complex com 100.0 3.9E-55 8.5E-60 442.8 30.4 401 5-478 68-514 (537)
42 KOG0357 Chaperonin complex com 100.0 6E-53 1.3E-57 409.3 16.2 306 15-478 71-389 (400)
43 cd03333 chaperonin_like chaper 100.0 3.3E-27 7.1E-32 225.7 20.6 192 95-358 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 8E-25 1.7E-29 216.1 21.6 198 108-359 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 98.7 1.8E-07 3.9E-12 107.2 13.7 204 111-369 337-578 (1598)
46 COG0459 GroL Chaperonin GroEL 97.2 0.00049 1.1E-08 74.6 6.2 89 186-290 259-354 (524)
47 smart00574 POX domain associat 43.0 58 0.0013 29.2 5.3 42 336-377 84-126 (140)
48 PTZ00212 T-complex protein 1 s 39.4 69 0.0015 35.1 6.6 44 116-159 178-222 (533)
49 PRK13600 putative ribosomal pr 38.3 1.1E+02 0.0025 24.9 6.0 55 188-252 20-74 (84)
50 TIGR02345 chap_CCT_eta T-compl 37.0 13 0.00029 40.5 0.6 60 196-256 246-314 (522)
51 TIGR02341 chap_CCT_beta T-comp 32.5 95 0.0021 33.9 6.2 43 116-159 167-211 (519)
52 PF07526 POX: Associated with 30.3 95 0.0021 27.9 4.8 43 336-378 84-127 (140)
53 COG3962 Acetolactate synthase 29.3 25 0.00055 37.7 1.0 39 342-380 216-254 (617)
54 PLN02512 acetylglutamate kinas 23.0 1.6E+02 0.0035 29.9 5.5 48 318-366 42-90 (309)
55 PLN02282 phosphoglycerate kina 22.5 9.4E+02 0.02 25.5 12.1 149 182-371 76-231 (401)
56 PRK06683 hypothetical protein; 22.1 3.1E+02 0.0068 22.1 6.0 53 190-252 20-72 (82)
57 PRK13601 putative L7Ae-like ri 21.8 3.4E+02 0.0074 21.9 6.1 52 190-252 17-69 (82)
58 PLN03034 phosphoglycerate kina 20.1 9.9E+02 0.022 26.0 10.8 37 325-371 268-306 (481)
No 1
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-96 Score=791.31 Aligned_cols=460 Identities=38% Similarity=0.550 Sum_probs=436.0
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||++++. ..+.+++|++||+++||||||+|+||++||+++.++++ |+||..|++||+.|.+.++++
T Consensus 52 G~tIlk~i~~~hp~~~~~--akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~ 129 (542)
T PRK00013 52 GVTVAKEIELEDPFENMG--AQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEE 129 (542)
T ss_pred HHHHHHHccCCCchhhHH--HHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999953333 33336899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 011729 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (478)
Q Consensus 84 L~~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (478)
|+++++|+++.++|.++|++|+++++.+++++++|+..++.++.|.|+.+++..+++++++|++|++||.+|||.++++.
T Consensus 130 L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~ 209 (542)
T PRK00013 130 LKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEK 209 (542)
T ss_pred HHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccC
Confidence 99999999888899999999998899999999999999998888999877767789999999999999999999998888
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHH
Q 011729 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (478)
Q Consensus 164 ~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le 243 (478)
++..++||+|+++|.+|++++++.++++++.++|+||||++++|+++++++|..|+++|+++|++||+|+||++|+++|+
T Consensus 210 ~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~ 289 (542)
T PRK00013 210 MEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLE 289 (542)
T ss_pred CeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 011729 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (478)
Q Consensus 244 ~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l~~Rl~ 319 (478)
|||++|||++++++.+++++++++++||+|+.|+++++++++|+++++++++..|+++|+++++++.+ ++|+||++
T Consensus 290 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~ 369 (542)
T PRK00013 290 DIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLA 369 (542)
T ss_pred HHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999998776 99999999
Q ss_pred hhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 011729 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (478)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~gi~~~a~AL~~~ 399 (478)
||+|+.+||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++++.|+++...++++|+|+++|++||+.|
T Consensus 370 ~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 449 (542)
T PRK00013 370 KLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRALEAP 449 (542)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988334899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
|++||+|||+|+.++ .+|++.+++++|||+.+| +++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 450 p~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g------------~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (542)
T PRK00013 450 LRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATG------------EYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTT 517 (542)
T ss_pred HHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCC------------ceeehhhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999875566899999999 9999999999999999999999999999999986
No 2
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-96 Score=793.57 Aligned_cols=456 Identities=37% Similarity=0.568 Sum_probs=437.4
Q ss_pred HHHHhhhcccc----CcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~----~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~ 79 (478)
..||||+|++. ||.+|++ +++|++||+++||||||+|+||++||+++.++++ |+||..|++||++|.+.
T Consensus 53 G~TIlk~i~~~~~~~~p~akll------~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (545)
T PRK12852 53 GVTVAKEIELEDKFENMGAQMV------REVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAA 126 (545)
T ss_pred HHHHHHHccCCCcccChHHHHH------HHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 57999999995 8888887 5888899999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCcccc
Q 011729 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~ 159 (478)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.++++++.|.++.|++..+++++++|++|++||.+|||++
T Consensus 127 ~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~ 206 (545)
T PRK12852 127 VVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVT 206 (545)
T ss_pred HHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCcccc
Confidence 99999999999987778999999999888999999999999999999999999888778999999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhh
Q 011729 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk 239 (478)
++++++..++||+|+++|.+|+++++++++++.+.++|+||||++++|+++++++|+.|+.+|..+|++||+|+||++|+
T Consensus 207 ~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~ 286 (545)
T PRK12852 207 NAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (545)
T ss_pred ccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 011729 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (478)
Q Consensus 240 ~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l~ 315 (478)
++|+|||++|||++++++.+.+++++++++||+|++|+++++++++++++++++.++.|+++|+.+++++.+ ++|+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (545)
T PRK12852 287 AMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQ 366 (545)
T ss_pred hHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999987777899999999999999999999999999999999999999999999998766 8999
Q ss_pred HHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 011729 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (478)
Q Consensus 316 ~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~gi~~~a~A 395 (478)
|||+||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++++.|++++..++++|+|+++|++|
T Consensus 367 ~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 446 (545)
T PRK12852 367 ERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKA 446 (545)
T ss_pred HHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876688899999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHH
Q 011729 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 474 (478)
Q Consensus 396 L~~~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~ 474 (478)
|+.||++||+|||+|+.++ .+|++.+++++|||+.+| +++||++.|||||+.||+++|++|+++|++
T Consensus 447 L~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g------------~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~ 514 (545)
T PRK12852 447 LEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTE------------EYVDMVAKGIIDPAKVVRTALQDAASVAGL 514 (545)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCC------------CcccHHhCcCCcChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999876667899999999 999999999999999999999999999999
Q ss_pred HhcC
Q 011729 475 KNAI 478 (478)
Q Consensus 475 iL~i 478 (478)
||+|
T Consensus 515 iL~i 518 (545)
T PRK12852 515 LVTT 518 (545)
T ss_pred HHhH
Confidence 9986
No 3
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.8e-96 Score=789.87 Aligned_cols=455 Identities=40% Similarity=0.575 Sum_probs=436.8
Q ss_pred HHHHhhhccccCc----ccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~ 79 (478)
..|||++|+++|| +++++ +++|++||+++||||||+|+||++||+++.++++ |+||..|++||+.|++.
T Consensus 52 GaTIlk~i~~~hp~~~~~a~ll------~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~ 125 (542)
T PRK12849 52 GVSIAKEIELEDPFENLGAQLV------KEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEA 125 (542)
T ss_pred HHHHHHHcccCCccHhHHHHHH------HHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4699999999999 67777 5888999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCcccc
Q 011729 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~ 159 (478)
++++|+++++|+++.++|.++|+||+++++.+++++++|+.+++.++.+.++.|++.+|++++++|++|++||.+|||.+
T Consensus 126 ~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~ 205 (542)
T PRK12849 126 VVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVT 205 (542)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccc
Confidence 99999999999988888999999999989999999999999999888899999999888899999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhh
Q 011729 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk 239 (478)
+.+.++..++||+|+++|.+|++++++.++++++.++|+||||++++|+++++++|..|+++|..+|++||+|++|++|+
T Consensus 206 ~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~ 285 (542)
T PRK12849 206 DPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 285 (542)
T ss_pred cccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 011729 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (478)
Q Consensus 240 ~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l~ 315 (478)
++|+|||++|||+++++..+.+++++++++||+|++|++++++|+++++++++++++.|+++|+++++++++ ++|+
T Consensus 286 ~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~ 365 (542)
T PRK12849 286 AMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQ 365 (542)
T ss_pred hHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999999987777899999999999999999999999999999999999999999999998776 9999
Q ss_pred HHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 011729 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (478)
Q Consensus 316 ~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~gi~~~a~A 395 (478)
||++||+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|+.|++++..++++|+|+++|++|
T Consensus 366 eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~A 445 (542)
T PRK12849 366 ERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRA 445 (542)
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999884489999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHH
Q 011729 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 474 (478)
Q Consensus 396 L~~~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~ 474 (478)
|+.||++||+|||+|+.++ .+|++.+ +++|||+.+| +++||++.|||||+.||.++|++|+++|++
T Consensus 446 l~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g------------~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~ 512 (542)
T PRK12849 446 LEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATG------------EYGDLIAAGIIDPVKVTRSALQNAASVAGL 512 (542)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCC------------ccccHHhccCccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9998754 5799999999 999999999999999999999999999999
Q ss_pred HhcC
Q 011729 475 KNAI 478 (478)
Q Consensus 475 iL~i 478 (478)
||+|
T Consensus 513 iL~i 516 (542)
T PRK12849 513 LLTT 516 (542)
T ss_pred HHhH
Confidence 9986
No 4
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.6e-96 Score=783.80 Aligned_cols=459 Identities=42% Similarity=0.599 Sum_probs=436.8
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||.+++. ..+.+++|++||+++||||||+++||++||+++.++++ |+||..|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hp~~~~~--a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~ 127 (520)
T cd03344 50 GVTVAKEIELEDPFENMG--AQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEE 127 (520)
T ss_pred HHHHHHHcccCCcchhHH--HHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 468999999999944432 33336889999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 011729 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (478)
Q Consensus 84 L~~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (478)
|+++++|+++.++|.++|+||+++++.+++++++|+.+++.++.|.+++|++..|++++++|++|++||.+|+|.++|++
T Consensus 128 L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 207 (520)
T cd03344 128 LKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEK 207 (520)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCccc
Confidence 99999999888899999999999999999999999999998888999999998888999999999999999999998888
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHH
Q 011729 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (478)
Q Consensus 164 ~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le 243 (478)
++.+++||+|+++|+++++++++.++++++.++|+||+|++++|+++++++|..|++++..++++||+|++|+.++++|+
T Consensus 208 ~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~ 287 (520)
T cd03344 208 MEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLE 287 (520)
T ss_pred CeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 011729 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (478)
Q Consensus 244 ~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l~~Rl~ 319 (478)
|||++|||++++++.+++++++++++||+|++|++++++++++++++++++++.|+++|++++++.++ ++|+||++
T Consensus 288 ~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 367 (520)
T cd03344 288 DIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLA 367 (520)
T ss_pred HHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999998766 99999999
Q ss_pred hhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 011729 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (478)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~gi~~~a~AL~~~ 399 (478)
||+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++++.|++++..++++|+|+++|++||+.|
T Consensus 368 ~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~i 447 (520)
T cd03344 368 KLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAP 447 (520)
T ss_pred HhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998767899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
|++||+|||+|+.++ ++|++.+. ++|||+.+| +++||++.|||||+.||.++|+.|+++|++||+|
T Consensus 448 p~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g------------~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~i 514 (520)
T cd03344 448 LRQIAENAGVDGSVVVEKVLESPD-GFGYDAATG------------EYVDMIEAGIIDPTKVVRSALQNAASVASLLLTT 514 (520)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCC------------cccchHhccCeecHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 99987654 899999999 9999999999999999999999999999999986
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=5.1e-96 Score=791.12 Aligned_cols=456 Identities=41% Similarity=0.607 Sum_probs=435.6
Q ss_pred HHHHhhhccccCc----ccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~ 79 (478)
..||||+|++.|| .++++ +++|++||+++||||||+|+||++||+++.++++ |+||..|++||+.|.+.
T Consensus 64 G~TIlk~i~~~~p~~~~~a~ll------~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~ 137 (555)
T PTZ00114 64 GVTVAKAIEFSDRFENVGAQLI------RQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKV 137 (555)
T ss_pred hHHHHHhcCcCCcchhHHHHHH------HHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4699999999999 77776 6888999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCcccc
Q 011729 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~ 159 (478)
++++|+++++|+++.++|.++|+||+++++.+++++++|+.++|.+|.|.+++|++++|++++++|++|++||.+|||.+
T Consensus 138 ~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~ 217 (555)
T PTZ00114 138 VLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVT 217 (555)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEecccccccccc
Confidence 99999999999988888999999999888999999999999999989899999999988779999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhh
Q 011729 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk 239 (478)
+++.++.++++|+|+++|.+|+++++++++++++.++|+||+|++++|+++++++|..|+++|.++|++||+|++|+.++
T Consensus 218 ~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~ 297 (555)
T PTZ00114 218 NEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRK 297 (555)
T ss_pred ccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCC-CCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHH
Q 011729 240 AIMEDLAILTGGQVLTGG-SGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKL 314 (478)
Q Consensus 240 ~~le~la~~tG~~v~s~~-~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l 314 (478)
++|+|||++|||+++++. .+..++++++++||+|++|+++++++++++++++++.|+.|+++|+.+++..++ ++|
T Consensus 298 ~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l 377 (555)
T PTZ00114 298 DILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKL 377 (555)
T ss_pred HHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999986 667778899999999999999999999999999999999999999999987765 899
Q ss_pred HHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcC---CChhhHHHHHH
Q 011729 315 KDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT---TNSDQKIGVQI 391 (478)
Q Consensus 315 ~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~---~~~~~~~gi~~ 391 (478)
+||++||+|++|||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|+.|++++. .++++|+|+++
T Consensus 378 ~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~ 457 (555)
T PTZ00114 378 KERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKI 457 (555)
T ss_pred HHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998864 37899999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHH
Q 011729 392 VQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATS 470 (478)
Q Consensus 392 ~a~AL~~~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~ 470 (478)
|++||+.||++||+|||+|+.++ .+|++.+++++|||+.+| +++||++.|||||+.||+++|++|++
T Consensus 458 ~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g------------~~~d~~~~GI~Dp~~vk~~al~~A~~ 525 (555)
T PTZ00114 458 VRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTG------------EYVNMFEAGIIDPTKVVRSALVDAAS 525 (555)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCC------------cEeeHHhCCCEeCHHHHHHHHHHHHH
Confidence 99999999999999999999999 999765567899999999 99999999999999999999999999
Q ss_pred HHHHHhcC
Q 011729 471 MISLKNAI 478 (478)
Q Consensus 471 ~A~~iL~i 478 (478)
+|++||+|
T Consensus 526 ~A~~iL~i 533 (555)
T PTZ00114 526 VASLMLTT 533 (555)
T ss_pred HHHHHHhH
Confidence 99999985
No 6
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=4.6e-96 Score=788.84 Aligned_cols=456 Identities=38% Similarity=0.575 Sum_probs=438.3
Q ss_pred HHHHhhhcccc----CcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (478)
Q Consensus 5 ~~~il~~~~~~----~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~ 79 (478)
..||||+|++. ||.++++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|++.
T Consensus 53 G~tIlk~i~~~d~~~~pgakll------~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (546)
T PRK14104 53 GVTVAKEIELEDKFENMGAQMV------REVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEA 126 (546)
T ss_pred HHHHHHHhcCCCcccChHHHHH------HHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Confidence 47999999999 9999988 5888999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCcccc
Q 011729 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~ 159 (478)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.++|.+|.|.++.+++.++++++++|++|++||.+|||.+
T Consensus 127 ~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~ 206 (546)
T PRK14104 127 VVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVT 206 (546)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhc
Confidence 99999999999987778999999999989999999999999999999999998888778999999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhh
Q 011729 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (478)
Q Consensus 160 ~~~~~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk 239 (478)
+++.++.++++|+|+++|.+++++++++|+++.+.++|+||||++++|+++++++|..|++++..+|+|||+|+||++|+
T Consensus 207 ~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~ 286 (546)
T PRK14104 207 NADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (546)
T ss_pred CcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 011729 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (478)
Q Consensus 240 ~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l~ 315 (478)
++|+|||++|||++++++.+..++++++++||+|++|+++++++++++|+++++.+..|+++|+++++++.+ ++|+
T Consensus 287 ~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (546)
T PRK14104 287 AMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQ 366 (546)
T ss_pred HHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999998888899999999999999999999999999999999999999999999998876 9999
Q ss_pred HHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 011729 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (478)
Q Consensus 316 ~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~gi~~~a~A 395 (478)
||++||+|++|||+|||+|+++++|++|+++||+|++|+++++|||||||++|++++..|+++...++++++|+++|++|
T Consensus 367 eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 446 (546)
T PRK14104 367 ERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKA 446 (546)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998855588999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHH
Q 011729 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 474 (478)
Q Consensus 396 L~~~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~ 474 (478)
|+.||++||+|||+|+.++ .+|++.+++++|||+.+| +++||++.|||||+.||+++|++|+++|++
T Consensus 447 l~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g------------~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~ 514 (546)
T PRK14104 447 LSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTG------------EYGNLVSKGIIDPTKVVRTAIQNAASVAAL 514 (546)
T ss_pred HHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCC------------ceeehHhcCCEEcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999875566799999999 999999999999999999999999999999
Q ss_pred HhcC
Q 011729 475 KNAI 478 (478)
Q Consensus 475 iL~i 478 (478)
||+|
T Consensus 515 iL~i 518 (546)
T PRK14104 515 LITT 518 (546)
T ss_pred HHHH
Confidence 9985
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.5e-95 Score=783.24 Aligned_cols=459 Identities=38% Similarity=0.557 Sum_probs=434.7
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||++++. ..+.+++|++||+++||||||+|+||++||+++.++++ |+||..|++||+.|++.++++
T Consensus 51 G~tIlk~i~~~hp~~~~~--akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~ 128 (524)
T TIGR02348 51 GVTVAKEIELEDKFENMG--AQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEE 128 (524)
T ss_pred HHHHHHHccCCChhhHHH--HHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999943333 33336899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 011729 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (478)
Q Consensus 84 L~~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (478)
|+++++|+++.+++.++|++|+++++.+++++++|+.+++.++.|.++.|++.+|++++++|++|++||.+|||.+++++
T Consensus 129 L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~ 208 (524)
T TIGR02348 129 LKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEK 208 (524)
T ss_pred HHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccC
Confidence 99999999888899999999999899999999999999999888999988888889999999999999999999998889
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHH
Q 011729 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (478)
Q Consensus 164 ~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le 243 (478)
++..++||+|+++|++|++++++.++++++.++|+||||++++|+++++++|..|+++|+++|++||+|+||++|+++|+
T Consensus 209 ~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~ 288 (524)
T TIGR02348 209 MEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLE 288 (524)
T ss_pred CeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 011729 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (478)
Q Consensus 244 ~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l~~Rl~ 319 (478)
|||++|||++++.+.+++++++++++||+|+.|+++++++++++++++++.+..|+++|+++++++.+ ++|+||++
T Consensus 289 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 368 (524)
T TIGR02348 289 DIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLA 368 (524)
T ss_pred HHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999998766 99999999
Q ss_pred hhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 011729 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (478)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~gi~~~a~AL~~~ 399 (478)
||+|+++||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|..|++....++++++|+++|++||+.|
T Consensus 369 ~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~i 448 (524)
T TIGR02348 369 KLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEGLKGDNEDEAIGIDIVKRALEAP 448 (524)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999883334889999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
|++||+|||+|+.++ ++|++.. .++|||+.+| +++||++.|||||+.||+++|++|+++|++||+|
T Consensus 449 p~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g------------~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 515 (524)
T TIGR02348 449 LRQIAENAGKDGAVVAEKVKESK-GNFGFNAATG------------EYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTT 515 (524)
T ss_pred HHHHHHhCCCCHHHHHHHHHhcC-CCeeEeCcCC------------cccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999 9998753 3589999999 9999999999999999999999999999999986
No 8
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.5e-95 Score=782.22 Aligned_cols=458 Identities=34% Similarity=0.515 Sum_probs=436.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +.+.+++|.+|++++||||||+||||++||++|.++++ |+||+.|++||+.|.+.+++.
T Consensus 52 G~tIlk~i~~~hp~a~~g--~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~ 129 (529)
T CHL00093 52 GVTIAKEIELEDHIENTG--VALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQ 129 (529)
T ss_pred HHHHHHHccCcCHHHHHH--HHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999988 88888998888999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 011729 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (478)
Q Consensus 84 L~~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (478)
|+++++|+++.++|.++|++|+++++.+++++++|+.++|.+|.|.++.|+...+++++++|++|++||.+|||.+++++
T Consensus 130 L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~ 209 (529)
T CHL00093 130 IAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTER 209 (529)
T ss_pred HHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCcc
Confidence 99999999888899999999999999999999999999998898999887777788999999999999999999999999
Q ss_pred ceeeecCceEEEeccccCCH-HHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHH
Q 011729 164 KECVLDGALVLIYDTKISNS-NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM 242 (478)
Q Consensus 164 ~~~~l~~~~Ili~d~~i~~~-~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~l 242 (478)
+..+++||+|+++|.+|+.. .+++++++.+.++|+||+|++++|++++++.|+.|+.+++++|++||+|++|++|+++|
T Consensus 210 ~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l 289 (529)
T CHL00093 210 MEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAML 289 (529)
T ss_pred ceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHH
Confidence 99999999999999999987 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHH
Q 011729 243 EDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRL 318 (478)
Q Consensus 243 e~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l~~Rl 318 (478)
+|||++|||++++++.+.+++++++++||+|+.|+++++++++++ .++++.+..|+.+++++++.+++ ++|+||+
T Consensus 290 ~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~ 368 (529)
T CHL00093 290 EDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERL 368 (529)
T ss_pred HHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 999999999999988777899999999999999999999999998 56789999999999999988776 9999999
Q ss_pred hhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcC--CChhhHHHHHHHHHHH
Q 011729 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT--TNSDQKIGVQIVQNAL 396 (478)
Q Consensus 319 ~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~--~~~~~~~gi~~~a~AL 396 (478)
+||+|+.+||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|+.|++++. .++++|+|+++|++||
T Consensus 369 ~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL 448 (529)
T CHL00093 369 AKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAI 448 (529)
T ss_pred HHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865 4899999999999999
Q ss_pred HHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHH
Q 011729 397 KMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLK 475 (478)
Q Consensus 397 ~~~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~i 475 (478)
+.||++||+|||+|+.++ .+|++. +.++|||+.+| +++||++.|||||+.||.++|+.|+++|++|
T Consensus 449 ~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g------------~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~i 515 (529)
T CHL00093 449 LAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANN------------KFVNMYEAGIIDPAKVTRSALQNAASIASMI 515 (529)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCC------------cccchHhccCEEcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999764 45899999999 9999999999999999999999999999999
Q ss_pred hcC
Q 011729 476 NAI 478 (478)
Q Consensus 476 L~i 478 (478)
|+|
T Consensus 516 L~i 518 (529)
T CHL00093 516 LTT 518 (529)
T ss_pred HHH
Confidence 986
No 9
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.2e-95 Score=781.74 Aligned_cols=459 Identities=37% Similarity=0.548 Sum_probs=436.0
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..|||++|+++||+++++ ..+.+++|++||+++||||||+|+||++||++|.++++ |+||..|++||+.|++.++++
T Consensus 53 G~tIlk~i~i~hp~~~~g--a~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~ 130 (544)
T PRK12850 53 GVTVAKEIELEDKFENMG--AQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDE 130 (544)
T ss_pred HHHHHHHhcCCChhhhHH--HHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 479999999999996555 45557889999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 011729 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (478)
Q Consensus 84 L~~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (478)
|+++++++++.++|.++|++|+++++.+++++++|+.++|.+|.|.++.+...++++++++|++|++||.+|||.++++.
T Consensus 131 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~ 210 (544)
T PRK12850 131 LKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEK 210 (544)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCcccccccc
Confidence 99999999888889999999998899999999999999998888888877666789999999999999999999998888
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHH
Q 011729 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (478)
Q Consensus 164 ~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le 243 (478)
++.+++||+|+++|.++++.+++.++++++.++|+||||++++|+++++++|..|+++|.+++++||+|+||+.|+++|+
T Consensus 211 ~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le 290 (544)
T PRK12850 211 MRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLE 290 (544)
T ss_pred CeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 011729 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (478)
Q Consensus 244 ~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l~~Rl~ 319 (478)
|||++|||++++++.+++++++++++||+|++|+++++++++++++++++++..|+++++++++++.+ ++|+||++
T Consensus 291 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 370 (544)
T PRK12850 291 DIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLA 370 (544)
T ss_pred HHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999987777799999999999999999999999999999999999999999999998766 89999999
Q ss_pred hhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 011729 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (478)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~gi~~~a~AL~~~ 399 (478)
||+|+.|||+|||+|+++++|++|+++||+|++|+++++|||||||++|++++..|+++...++++|+|+++|++||+.|
T Consensus 371 ~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 450 (544)
T PRK12850 371 KLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEP 450 (544)
T ss_pred HhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988434899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
|++||+|||+|+.++ ++|++.+ .++|||+.+| +++||++.|||||+.||+++|++|+++|++||+|
T Consensus 451 p~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g------------~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (544)
T PRK12850 451 LRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTG------------EYGDMVEAGIIDPAKVTRTALQDAASIAALLITT 517 (544)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCC------------cccchhhccCcccHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999 9997654 5789999999 9999999999999999999999999999999986
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1e-94 Score=778.18 Aligned_cols=459 Identities=40% Similarity=0.571 Sum_probs=433.8
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||++.+. ..+.+++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|++.++++
T Consensus 53 G~tIlk~i~~~hp~~~~~--akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~ 130 (541)
T PRK12851 53 GVTIAKEIELEDKFENMG--AQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEE 130 (541)
T ss_pred HHHHHHHccCCCchhhHH--HHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999944332 33336899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 011729 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (478)
Q Consensus 84 L~~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (478)
|+++++|+++.+++.++|++|+++++.+++++++|+.+++.+|.|.++.+....+++++++|++|++||.+|||.++++.
T Consensus 131 L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~ 210 (541)
T PRK12851 131 LKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADK 210 (541)
T ss_pred HHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCC
Confidence 99999999888889999999998899999999999999998888888776666678999999999999999999999889
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHH
Q 011729 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (478)
Q Consensus 164 ~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le 243 (478)
++.+++||+|+++|.++++.+++.++++++.++|+||||++++|+++++++|..|+++|.++|++||+|+||+.|+++|+
T Consensus 211 ~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~ 290 (541)
T PRK12851 211 MEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLE 290 (541)
T ss_pred CeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 011729 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (478)
Q Consensus 244 ~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l~~Rl~ 319 (478)
|||++|||++++++.+++++++++++||+|+.|++.+++|+++++++++++++.|+++|+++++.+.+ ++|++|++
T Consensus 291 ~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~ 370 (541)
T PRK12851 291 DIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLA 370 (541)
T ss_pred HHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999987777789999999999999999999999999999999999999999999987655 99999999
Q ss_pred hhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 011729 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (478)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~gi~~~a~AL~~~ 399 (478)
||+|+++||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|..|++++..++++|+|+++|++||+.|
T Consensus 371 ~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~i 450 (541)
T PRK12851 371 KLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAP 450 (541)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988766889999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
|++||+|||+|+.++ .+|++.+ .++|||+.+| +++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 451 p~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g------------~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~i 517 (541)
T PRK12851 451 VRQIAENAGAEGSVVVGKLREKP-GGYGFNAATN------------EYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTT 517 (541)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCC------------CccchhhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999 9998754 4799999999 9999999999999999999999999999999986
No 11
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.4e-94 Score=782.16 Aligned_cols=459 Identities=32% Similarity=0.495 Sum_probs=432.9
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|++.||++.+. ..+.+++|++||+++||||||+||||++||+++.+++. |+||+.|++||+.|.+.++++
T Consensus 108 G~TIlk~i~~~hP~~~~g--akll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~ 185 (600)
T PLN03167 108 GVTVAKEVELEDPVENIG--AKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKE 185 (600)
T ss_pred HHHHHHHcccCCchhhHH--HHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999974333 33337999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 011729 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (478)
Q Consensus 84 L~~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~ 163 (478)
|++++.|+++ ++|.++|++|+++++.|++++++|+.++|++|.|.+++|++..|++++++|++|++||.+|||+++++.
T Consensus 186 L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~ 264 (600)
T PLN03167 186 LKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEK 264 (600)
T ss_pred HHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCC
Confidence 9999999975 679999999999899999999999999999899999999999888899999999999999999999999
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHH
Q 011729 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (478)
Q Consensus 164 ~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le 243 (478)
|+.+++||+|+++|.+|++++++.++++.+.++|+||||++++|++++|++|+.|++++..++++||+|+||++|+++|+
T Consensus 265 m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~ 344 (600)
T PLN03167 265 MSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLD 344 (600)
T ss_pred CeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 011729 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (478)
Q Consensus 244 ~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l~~Rl~ 319 (478)
|||++|||++++++.+++++++++++||+|++|++.+++++++++.++++.+++|+.+++.+++.+.+ ++|++||+
T Consensus 345 dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~ 424 (600)
T PLN03167 345 DIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIA 424 (600)
T ss_pred HHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHh
Confidence 99999999999987777899999999999999999999999999989999999999999999976655 88999999
Q ss_pred hhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcCC-ChhhH-HHHHHHHHHHH
Q 011729 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQK-IGVQIVQNALK 397 (478)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~-~~~~~-~gi~~~a~AL~ 397 (478)
+|+|+.++|+|||+|+.+++|+||+++||+|++|+++++|+|||||++|+++++.|++++.. ++++| +|++++++||+
T Consensus 425 ~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~ 504 (600)
T PLN03167 425 KLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALS 504 (600)
T ss_pred hcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988754 55555 67999999999
Q ss_pred HHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHh
Q 011729 398 MAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKN 476 (478)
Q Consensus 398 ~~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL 476 (478)
.||++||+|||+|+.++ .+|++++++++|||+.+| +++||++.|||||+.||+++|+.|+++|++||
T Consensus 505 ~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g------------~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL 572 (600)
T PLN03167 505 YPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATG------------KYEDLMAAGIIDPTKVVRCCLEHAASVAKTFL 572 (600)
T ss_pred cchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCC------------cCcchHhccCeecHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999866667899999999 99999999999999999999999999999999
Q ss_pred cC
Q 011729 477 AI 478 (478)
Q Consensus 477 ~i 478 (478)
+|
T Consensus 573 ~i 574 (600)
T PLN03167 573 TS 574 (600)
T ss_pred HH
Confidence 86
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-84 Score=666.10 Aligned_cols=454 Identities=39% Similarity=0.581 Sum_probs=440.1
Q ss_pred HHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHh
Q 011729 7 SLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLD 85 (478)
Q Consensus 7 ~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~L~ 85 (478)
|+.+++++.++...+. +.+.++++....++.||||||+++||+++.+++.+-+. |.+|..|.+|+..|.+.+++.|+
T Consensus 68 Tva~si~l~d~~~n~g--aklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~ 145 (550)
T KOG0356|consen 68 TVAKSIELKDKYENIG--AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELK 145 (550)
T ss_pred eeeccccccchhhhhc--cHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHH
Confidence 6778999999999998 89999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCccccccccce
Q 011729 86 CQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKE 165 (478)
Q Consensus 86 ~~s~~v~~~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~~~ 165 (478)
++++|+++.+++.+||++|+|+|..+++++++|+.++|++|.|+++.|.+..|++++++||.||+||+||||+++++.+.
T Consensus 146 k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~ 225 (550)
T KOG0356|consen 146 KMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQK 225 (550)
T ss_pred HhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHH
Q 011729 166 CVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDL 245 (478)
Q Consensus 166 ~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~l 245 (478)
+++++|++|+++.+|+++++|.|.|+...+..+||+|+++||+.++|++|+.|+.++..++||||.|+||+.|++.+.|+
T Consensus 226 ~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Di 305 (550)
T KOG0356|consen 226 VEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDI 305 (550)
T ss_pred hhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEeeCCCC-CCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHhh
Q 011729 246 AILTGGQVLTGGSG-MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAK 320 (478)
Q Consensus 246 a~~tG~~v~s~~~~-~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s----~~l~~Rl~~ 320 (478)
|.+|||+++..+.+ ++++++++++||.|+++.++.+.+.++.+.+++++++.|++|++..++..++ ++|++|+++
T Consensus 306 ai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ 385 (550)
T KOG0356|consen 306 AILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAK 385 (550)
T ss_pred HHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 99999999999988 8999999999999999999999999999999999999999999998887766 889999999
Q ss_pred hcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcC-CChhhHHHHHHHHHHHHHH
Q 011729 321 LSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNALKMA 399 (478)
Q Consensus 321 l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~-~~~~~~~gi~~~a~AL~~~ 399 (478)
|+|++++|.|||.|+.|++|++++++||||++++|+++|+|||||+++++|+..|.++.. .+.+++.|++++.+||..|
T Consensus 386 ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P 465 (550)
T KOG0356|consen 386 LSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLP 465 (550)
T ss_pred hcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999988776 4788999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhc
Q 011729 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 477 (478)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~ 477 (478)
.++|++|||.|+..+ .+++ + .++|||..++ +|+||++.||+||++|.+.+|..|.++|+++++
T Consensus 466 ~~~IakNAGvdg~~vv~Kv~-~--~~~gyda~~~------------ey~dlv~~GiidP~kVvr~al~~a~~vasll~t 529 (550)
T KOG0356|consen 466 AQTIAKNAGVDGSVVVEKVL-N--DDYGYDAAKG------------EYVDLVEAGIIDPTKVVRTALTDAAGVASLLTT 529 (550)
T ss_pred HHHHHHhcCCchHHHHHHHH-h--hhhhhhhhcc------------cHHHHHhccCCChHHHHHHhhhhhhHHHHHHhh
Confidence 999999999999999 9988 3 2799999999 999999999999999999999999999999875
No 13
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-78 Score=645.11 Aligned_cols=395 Identities=18% Similarity=0.242 Sum_probs=356.9
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|++.||+++++ + ++|++||+++||||||+++||++||+++.+++. |+||+.|++||+.|.+.++++
T Consensus 54 G~tIlk~i~~~hP~a~l~--~----~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~ 127 (484)
T cd03342 54 GNVLLSEMQIQHPTASMI--A----RAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKF 127 (484)
T ss_pred HHHHHHhccCcCHHHHHH--H----HHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 4 788899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC---CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCC-c-----eeEe--cCCCccceeEEEeeE
Q 011729 84 LDCQARKIT---TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWEND-L-----ITIF--DRKALYNELNFVKGM 146 (478)
Q Consensus 84 L~~~s~~v~---~~~~l~~vA~ts~~~~------~~la~li~~a~~~vg~~~-~-----I~v~--~g~~~~d~~~lv~G~ 146 (478)
|++++.+++ +.+.+.++|++|++++ +.|++++++|+.++++++ . |++. .|++. +++++++|+
T Consensus 128 L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~-~ds~~i~G~ 206 (484)
T cd03342 128 LESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSD-SDTKLIRGL 206 (484)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCCh-hhceEEeeE
Confidence 999999987 7788999999999864 789999999999998765 2 3332 57766 579999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccCCHHH-HHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCcc
Q 011729 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~~~~-i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~ 225 (478)
+|+++|.+|+|+ .+++||+|+++|++++..+. +... .-.+|||++++|++.++++|..|+
T Consensus 207 ~~~~~~~~~~m~-------~~~~n~~Ill~~~~le~~~~~~~~~------~~~~lvi~~~~I~~~al~~l~~~~------ 267 (484)
T cd03342 207 VLDHGARHPDMP-------KRVENAYILTCNVSLEYEKTEVNSG------FFYSVVINQKGIDPPSLDMLAKEG------ 267 (484)
T ss_pred EEecCCCCCCCC-------ccccCceEEEEeCCCCCCccccCcE------EEEEEEEeCCCccHHHHHHHHHCC------
Confidence 999999999883 36889999999999886643 2111 113699999999999999999864
Q ss_pred EEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHH
Q 011729 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQL 302 (478)
Q Consensus 226 v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v---~i~~~~~~~~~g~~~~~~i~~~~~~l 302 (478)
|++||+. ++++|+|||++|||+++++ ++++++++||+|++| ++++++++++++++++
T Consensus 268 I~av~~~-----~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------- 327 (484)
T cd03342 268 ILALRRA-----KRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP---------- 327 (484)
T ss_pred CeEEEeC-----CHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeEEEEEECCCCC----------
Confidence 7999987 5778999999999999996 899999999999999 5788899999998765
Q ss_pred HHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHhhcCC
Q 011729 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (478)
Q Consensus 303 ~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~ 381 (478)
+.|||+|||+|+.+++|+||+++||++++|+++++| +|||||++|++++..|++++..
T Consensus 328 ---------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~ 386 (484)
T cd03342 328 ---------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKS 386 (484)
T ss_pred ---------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhc
Confidence 469999999999999999999999999999999999 9999999999999999998765
Q ss_pred -ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCCcccccccCCCCCcccccccCCcc
Q 011729 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVD 456 (478)
Q Consensus 382 -~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~d 456 (478)
++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+| +++||++.||||
T Consensus 387 ~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g------------~~~d~~~~gI~d 454 (484)
T cd03342 387 VKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTG------------EPMDPESEGIWD 454 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCC------------cccchhhcCcEE
Confidence 889999999999999999999999999999999 999753 456799999999 999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHhcC
Q 011729 457 PLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 457 p~~v~~~al~~A~~~A~~iL~i 478 (478)
|+.||+++|+.|+++|++||+|
T Consensus 455 p~~vk~~~l~~A~e~a~~iL~I 476 (484)
T cd03342 455 NYSVKRQILHSATVIASQLLLV 476 (484)
T ss_pred cHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999997
No 14
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3e-77 Score=642.42 Aligned_cols=401 Identities=18% Similarity=0.232 Sum_probs=356.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ + ++|++||+++||||||+++||++||++|.++++ |+||..|++||+.|.+.++++
T Consensus 58 G~TIlk~i~i~hP~a~ll--~----~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (531)
T TIGR02347 58 GNVLLNEMQIQHPTASMI--A----RAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEF 131 (531)
T ss_pred HHHHHHhccccChHHHHH--H----HHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 4 778899999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccccc---CCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCCc------eeE--ecCCCccceeEEEeeE
Q 011729 84 LDCQARKI---TTFEEIAQVGTTAANG------DGEIGELIAKVFEKGWENDL------ITI--FDRKALYNELNFVKGM 146 (478)
Q Consensus 84 L~~~s~~v---~~~~~l~~vA~ts~~~------~~~la~li~~a~~~vg~~~~------I~v--~~g~~~~d~~~lv~G~ 146 (478)
|++++.++ .+.+.|.++|++++++ ++.|++++++|+.++++++. |++ ..|++. +++++++|+
T Consensus 132 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~-~ds~~v~Gi 210 (531)
T TIGR02347 132 LDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSA-TDTTLIRGL 210 (531)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCc-cccEEEeeE
Confidence 99999764 4677899999998864 67899999999999987653 343 245554 679999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccCCH-------------HH-----------HHHHHHHHHhcCC----
Q 011729 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQGQ---- 198 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~~-------------~~-----------i~~~le~i~~~~~---- 198 (478)
+|+++|.+|+|+ .+++||+|+++|++++.. ++ +..+++++.+.|+
T Consensus 211 v~~~~~~~~~~~-------~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~ 283 (531)
T TIGR02347 211 VLDHGARHPDMP-------RRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCG 283 (531)
T ss_pred EEecCcCCCCCc-------eeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999884 378999999999876532 22 3455667776551
Q ss_pred ---C---EEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee
Q 011729 199 ---S---LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 272 (478)
Q Consensus 199 ---~---lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~ 272 (478)
+ ||+++++|++.++++|.. .+|+++|+. ++++|+|||++|||+++++ ++++++++||+
T Consensus 284 ~~~~~~~lvi~~k~I~~~a~~~L~~------~~I~~i~rv-----~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~ 347 (531)
T TIGR02347 284 KSPDKGFVVINQKGIDPPSLDLLAK------EGIMALRRA-----KRRNMERLTLACGGEALNS-----VEDLTPECLGW 347 (531)
T ss_pred cCCCccEEEEeCCCccHHHHHHHHH------CCceEEccC-----CHHHHHHHHHHhCCEEecc-----cccCCcccccc
Confidence 3 888899999999998887 447999987 3667999999999999986 89999999999
Q ss_pred eeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHH
Q 011729 273 CKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNAL 349 (478)
Q Consensus 273 ~~~v---~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl 349 (478)
|+.| ++++++|++|++++++ ++|||+|||+|+.+++|++|+++||+
T Consensus 348 ~~~v~~~~ig~~~~~~i~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl 396 (531)
T TIGR02347 348 AGLVYETSIGEEKYTFIEEVKNP-------------------------------KSCTILIKGPNDHTIKQIKDAVRDGL 396 (531)
T ss_pred ceEEEEEEECCeEEEEEEcCCCC-------------------------------CeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999 6788999999998765 36999999999999999999999999
Q ss_pred HHHHHHHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCC
Q 011729 350 HAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSS 423 (478)
Q Consensus 350 ~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~ 423 (478)
|++|+++++| +|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.
T Consensus 397 ~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~ 476 (531)
T TIGR02347 397 RAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGE 476 (531)
T ss_pred HHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCC
Confidence 9999999998 9999999999999999998764 899999999999999999999999999999999 999763 335
Q ss_pred CeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 424 DLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 424 ~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
++|||+.+| +++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 477 ~~Gid~~~g------------~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrI 519 (531)
T TIGR02347 477 VVGVDLETG------------EPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLV 519 (531)
T ss_pred ceeeeccCC------------CccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 789999999 9999999999999999999999999999999997
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.4e-77 Score=641.66 Aligned_cols=401 Identities=19% Similarity=0.277 Sum_probs=364.1
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..+|||+|++.||+++++ +++|++||+++||||||+|+||++||+++.+++. |+||..|++||+.|.+.++++
T Consensus 57 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03343 57 GATILKEMDIEHPAAKML------VEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALEL 130 (517)
T ss_pred HHHHHHHccCcCHHHHHH------HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 579999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCCc---------eeE--ecCCCccceeEEEe
Q 011729 84 LDCQARKIT--TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWENDL---------ITI--FDRKALYNELNFVK 144 (478)
Q Consensus 84 L~~~s~~v~--~~~~l~~vA~ts~~~~------~~la~li~~a~~~vg~~~~---------I~v--~~g~~~~d~~~lv~ 144 (478)
|++++.+++ +.+.+.++|++|++++ +.|++++++|+.+++.++. |++ ..|++.. ++++++
T Consensus 131 L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~-ds~lv~ 209 (517)
T cd03343 131 LDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVD-DTELIR 209 (517)
T ss_pred HHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHH-Hcceee
Confidence 999999986 6788999999999854 7899999999999987543 777 5788875 799999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHHHH-----------HHHHHhcCCCE
Q 011729 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQA-----------SLPCMMQGQSL 200 (478)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~-------------i~~~~~i~~~-----------le~i~~~~~~l 200 (478)
|++|+++|.+|+|+ ..++||+|+++|.+ +++++++.++ ++.+.+.|.||
T Consensus 210 G~v~~~~~~~~~m~-------~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 282 (517)
T cd03343 210 GIVIDKEVVHPGMP-------KRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANV 282 (517)
T ss_pred eEEEeccCCCCCCc-------cccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999884 36899999999988 4677666654 44888999999
Q ss_pred EEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe-
Q 011729 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT- 279 (478)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~- 279 (478)
||++++|++.++++|.. .+++++++. ++++|+|||++|||+++++ ++++++++||+|+.|++.
T Consensus 283 vi~~~~I~~~al~~l~~------~gI~~v~~v-----~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 346 (517)
T cd03343 283 VFCQKGIDDLAQHYLAK------AGILAVRRV-----KKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERK 346 (517)
T ss_pred EEeCCCccHHHHHHHhH------CCcEEEEeC-----CHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEE
Confidence 99999999999998874 346889977 5778999999999999986 888998999999999865
Q ss_pred --cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHH
Q 011729 280 --MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (478)
Q Consensus 280 --~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~ 357 (478)
+++|++++++++++ .+||+|||+|+.+++|++|+++||++++|++++
T Consensus 347 ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 347 VGDDKMVFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred ECCeEEEEEEcCCCCc-------------------------------eEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999987653 489999999999999999999999999999999
Q ss_pred cC-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCC
Q 011729 358 EG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR 431 (478)
Q Consensus 358 ~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~ 431 (478)
+| ||||||++|++++..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~ 475 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYT 475 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCC
Confidence 99 9999999999999999988654 889999999999999999999999999999999 99974 245679999999
Q ss_pred CCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 432 GRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 432 ~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
| ++.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 476 g------------~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 510 (517)
T cd03343 476 G------------EVVDMLEKGVIEPLRVKKQAIKSATEAATMILRI 510 (517)
T ss_pred C------------CccchhhcCceecHHHHHHHHHHHHHHHHHHHhh
Confidence 9 9999999999999999999999999999999986
No 16
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=7.9e-77 Score=639.53 Aligned_cols=401 Identities=19% Similarity=0.262 Sum_probs=362.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|+++||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02339 58 GATILKEMDIEHPAAKML------VEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEI 131 (519)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC--HHHHHHHHHHhcCCC-------hhHHHHHHHHHHhhcc---CCc-------eeE--ecCCCccceeEE
Q 011729 84 LDCQARKITT--FEEIAQVGTTAANGD-------GEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNF 142 (478)
Q Consensus 84 L~~~s~~v~~--~~~l~~vA~ts~~~~-------~~la~li~~a~~~vg~---~~~-------I~v--~~g~~~~d~~~l 142 (478)
|+++++|++. .+.|.++|+|+++++ +.|++++++|+.++++ +|. |++ ..|++.. ++++
T Consensus 132 L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~-ds~l 210 (519)
T TIGR02339 132 IDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSID-DTEL 210 (519)
T ss_pred HHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChh-ccee
Confidence 9999999863 578999999998754 6899999999999985 553 445 4788875 7999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHHHHHH-----------HHHhcCC
Q 011729 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQ 198 (478)
Q Consensus 143 v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~-------------i~~~~~i~~~le-----------~i~~~~~ 198 (478)
++|++|+++|.+|.|+ ..++||+|+++|++ +++++++.++++ .+++.|.
T Consensus 211 v~G~vi~~~~~~~~m~-------~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~ 283 (519)
T TIGR02339 211 VEGIVVDKEPVHPGMP-------KRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGA 283 (519)
T ss_pred EeeEEEecCCCCCCCc-------cccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998653 47899999999987 677777777766 7999999
Q ss_pred CEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE
Q 011729 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA 278 (478)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i 278 (478)
|||+++++|++.++++|.. .+++++++. ++++|+|||++|||+++++ ++++++++||+|+.|++
T Consensus 284 ~lvi~~~~I~~~al~~L~~------~gI~~v~~v-----~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~ 347 (519)
T TIGR02339 284 NVVFCQKGIDDLAQHYLAK------AGILAVRRV-----KKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEE 347 (519)
T ss_pred cEEEECCCccHHHHHHHHH------CCCEEEecC-----CHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEE
Confidence 9999999999999998874 346888877 5778999999999999986 88888889999999986
Q ss_pred ec---ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHH
Q 011729 279 TM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (478)
Q Consensus 279 ~~---~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a 355 (478)
.+ ++|++|++++++. .+||+|||+|+.+++|.+|+++||++++|++
T Consensus 348 ~~ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 348 RKVGDDKMTFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred EEECCeEEEEEEcCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 8899999986653 5899999999999999999999999999999
Q ss_pred HHcC-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeC
Q 011729 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNP 429 (478)
Q Consensus 356 ~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~ 429 (478)
+++| ||||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|+. .++.++|||+
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~ 476 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINV 476 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEc
Confidence 9999 9999999999999999988664 889999999999999999999999999999999 99975 2456799999
Q ss_pred CCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 430 ARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
.+| ++.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 477 ~~g------------~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (519)
T TIGR02339 477 FTG------------EIEDMLELGVIEPLRVKEQAIKSATEAATMILRI 513 (519)
T ss_pred CCC------------CccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999999999999999986
No 17
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-78 Score=646.31 Aligned_cols=432 Identities=31% Similarity=0.433 Sum_probs=379.7
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011729 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~L 84 (478)
.||||+|++.||.+|++ +.+|++||+++||||||+||||++||++|.++++ |+||+.|++||++|.+.++++|
T Consensus 54 ~tIlkeielehp~akll------~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l 127 (524)
T COG0459 54 VTILKEIELEHPGAKLL------VEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEEL 127 (524)
T ss_pred ceehhhhhccCchhHHH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999 4888899999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccCCHH-----HHHHHHHHhcCCChhHHHHHHHHHHhhcc-----CCceeEecCCCccceeEEEeeEEEeccccC
Q 011729 85 DCQARKITTFE-----EIAQVGTTAANGDGEIGELIAKVFEKGWE-----NDLITIFDRKALYNELNFVKGMKLEWGLKS 154 (478)
Q Consensus 85 ~~~s~~v~~~~-----~l~~vA~ts~~~~~~la~li~~a~~~vg~-----~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~ 154 (478)
+++++++++.+ ...++++.++++++.|++++++|+.+++. ++.+.++..++..+++++++||+||+||.+
T Consensus 128 ~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s 207 (524)
T COG0459 128 KEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLS 207 (524)
T ss_pred HHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccC
Confidence 99999998554 44555555666678999999999999998 777788877777788999999999999999
Q ss_pred CccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEeccc
Q 011729 155 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 234 (478)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~ 234 (478)
|||.++ .+++||+|+++|++|+..+..++ ++...+++.||++++++..++++..++.|.+++..++++|+.|+|
T Consensus 208 ~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi 281 (524)
T COG0459 208 PYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI 281 (524)
T ss_pred CCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 998654 57889999999999999988888 887778888999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhc-ch--
Q 011729 235 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLS-TS-- 311 (478)
Q Consensus 235 g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~-~s-- 311 (478)
||.++..|+|++++||+++.+++.+ .....+|.|..+...++.+....|.+. ..++++. .+
T Consensus 282 ~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~ 345 (524)
T COG0459 282 DDLAKAYLEDIAILTGRRVKKEDLG-----ERLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDY 345 (524)
T ss_pred cHHHHHHHHhhcceecceecchhhH-----HHHHHccCceEEeecccCceeecCccc-----------cceEEEeeccch
Confidence 9999999999999999998876532 144567777777776666665555320 1122222 22
Q ss_pred --HHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHhh-cCCCh-hhH
Q 011729 312 --DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL-QTTNS-DQK 386 (478)
Q Consensus 312 --~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~-~~~~~-~~~ 386 (478)
.++++|.++ .|++|||+|||+|+.+++|+||++|||||++|+++++| +|||||++|++++..|+++ ...++ ++|
T Consensus 346 ~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~ 424 (524)
T COG0459 346 DMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQ 424 (524)
T ss_pred hhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHH
Confidence 678888888 89999999999999999999999999999999999999 9999999999999999998 33355 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCC-CCeeEeCCCCCcccccccCCCCCc-ccccccCCccccccHHH
Q 011729 387 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDS-SDLGYNPARGRWECFHFFSEPGNY-VDMFKCGDVDPLKHVPS 463 (478)
Q Consensus 387 ~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~~~-~~~G~d~~~~~~~~~~~~~~~~~~-~dm~~~gI~dp~~v~~~ 463 (478)
+|+++|++||+.||++||+|||+||.++ .+|++.+. +++|||+.++ ++ .||++.|||||++||++
T Consensus 425 ~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~------------~~~~dm~~~GI~dP~~v~~~ 492 (524)
T COG0459 425 LGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTG------------EYEDDMIEAGIIDPLKVKRS 492 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCC------------ccccchHhccCcChHHHHHH
Confidence 9999999999999999999999999999 99998654 4589999999 88 88999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 011729 464 EFAKATSMISLKNAI 478 (478)
Q Consensus 464 al~~A~~~A~~iL~i 478 (478)
+|++|+++|+++|+|
T Consensus 493 al~~A~e~a~llL~~ 507 (524)
T COG0459 493 ALKNAAEAAGLLLTI 507 (524)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999985
No 18
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.6e-76 Score=636.32 Aligned_cols=407 Identities=18% Similarity=0.245 Sum_probs=358.5
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..|||++|++.||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 51 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 124 (517)
T TIGR02342 51 GATILKQMGVIHPAAKML------VELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKI 124 (517)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---CCc-----eeEe--cCCCccceeEEEee
Q 011729 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---NDL-----ITIF--DRKALYNELNFVKG 145 (478)
Q Consensus 84 L~~~s~~v~--~~~~l~~vA~ts~~~------~~~la~li~~a~~~vg~---~~~-----I~v~--~g~~~~d~~~lv~G 145 (478)
|+++++|++ +.+.|.++|+||+++ .+.|++++++|+..++. ++. |++. .|++. +++++++|
T Consensus 125 L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~-~ds~li~G 203 (517)
T TIGR02342 125 LDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTI-DDTELIEG 203 (517)
T ss_pred HHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCCh-hhcEEEee
Confidence 999999886 678899999998873 34679999999999975 233 4443 46555 57999999
Q ss_pred EEEeccccCC-ccccccccceeeecCceEEEeccccC-------------CH-----------HHHHHHHHHHHhcCCCE
Q 011729 146 MKLEWGLKSP-YFFTHKNKKECVLDGALVLIYDTKIS-------------NS-----------NVIRQASLPCMMQGQSL 200 (478)
Q Consensus 146 ~~~~~g~~~~-~~~~~~~~~~~~l~~~~Ili~d~~i~-------------~~-----------~~i~~~le~i~~~~~~l 200 (478)
++|+++|.++ .|+ ..++||+|++++.+++ ++ +++.++++++++.|+||
T Consensus 204 ivl~k~~~~~~~mp-------k~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~l 276 (517)
T TIGR02342 204 LVFTQKASRSAGGP-------TRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNV 276 (517)
T ss_pred EEEeccccccCCCC-------ccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9999999873 442 3567788777765432 21 34678899999999999
Q ss_pred EEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---
Q 011729 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI--- 277 (478)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~--- 277 (478)
|+++++|++++++.++.|.+.+ .+|++|++. ++++|+|||++|||+++++ ++++++++||+|+.|+
T Consensus 277 vi~~~~I~~~~l~~l~~~~l~~-~~I~av~~v-----~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 345 (517)
T TIGR02342 277 LLIQKSILRDAVNDLALHFLAK-MKIMVVKDI-----EREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVT 345 (517)
T ss_pred EEECCCcccccccHHHHHHHhh-CCceEEecC-----CHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEE
Confidence 9999999888888888888777 889999977 6778999999999999986 8889999999999997
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHH
Q 011729 278 ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (478)
Q Consensus 278 i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~ 357 (478)
++++.++++.++.+ +|++|||+|||+|+.+++|+||+++||++++|++++
T Consensus 346 ~~~~~~~~i~~~~~------------------------------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~ 395 (517)
T TIGR02342 346 TDGGKIIKITGIQN------------------------------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVK 395 (517)
T ss_pred ECCeEEEEEEccCC------------------------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556777877644 236799999999999999999999999999999999
Q ss_pred c-CCcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCC
Q 011729 358 E-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR 431 (478)
Q Consensus 358 ~-gvVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~ 431 (478)
+ ++|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 396 ~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~ 475 (517)
T TIGR02342 396 KRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRK 475 (517)
T ss_pred CCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCC
Confidence 7 59999999999999999998665 889999999999999999999999999999999 999763 45679999999
Q ss_pred CCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 432 GRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 432 ~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
| +++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 476 g------------~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~i 510 (517)
T TIGR02342 476 G------------GITDMLEEEVLQPLLVTTSAVTLASETVRMILKI 510 (517)
T ss_pred C------------CccchhhccceEcHHHHHHHHHHHHHHHHHHhcc
Confidence 9 9999999999999999999999999999999997
No 19
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-76 Score=636.77 Aligned_cols=406 Identities=17% Similarity=0.207 Sum_probs=359.0
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..|||++|+++||+++++ +++|++||+++||||||++|||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hP~akll------~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (527)
T cd03335 50 GATILKLLEVEHPAAKIL------VELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKY 123 (527)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred Hhc-cccccC--CHHHHHHHHHHhcC-----C-ChhHHHHHHHHHHhhcc---CCc-------eeE--ecCCCccceeEE
Q 011729 84 LDC-QARKIT--TFEEIAQVGTTAAN-----G-DGEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNF 142 (478)
Q Consensus 84 L~~-~s~~v~--~~~~l~~vA~ts~~-----~-~~~la~li~~a~~~vg~---~~~-------I~v--~~g~~~~d~~~l 142 (478)
|++ +++|++ +.+.|.++|+|+++ + ++.|++++++|+.+++. +|. |.+ ..|++.. ++++
T Consensus 124 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~-~s~l 202 (527)
T cd03335 124 IKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAK-ESYL 202 (527)
T ss_pred HHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChh-hcce
Confidence 996 898987 67889999999876 2 47899999999999852 232 333 3687775 7999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCC-------------HH-----------HHHHHHHHHHhcCC
Q 011729 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SN-----------VIRQASLPCMMQGQ 198 (478)
Q Consensus 143 v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~-------------~~-----------~i~~~le~i~~~~~ 198 (478)
++|++|+++|.+|.|+ ..++||+|+++|++|+. ++ .+.++++.+.+.|+
T Consensus 203 i~Givi~~~~~~~~m~-------~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~ 275 (527)
T cd03335 203 VNGYALNCTRASQGMP-------TRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGA 275 (527)
T ss_pred eeeEEEecccCCCCCc-------ccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999988653 47899999999987653 12 23467888889999
Q ss_pred CEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCC-CcCCCCCCCceeeeEEE
Q 011729 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (478)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~-~~~~~~~~~LG~~~~v~ 277 (478)
||||++++|++.++++|..+ +++++++. ++++|+|||++|||+++++..++ ..+++++++||+|+.|+
T Consensus 276 ~lvi~~k~I~d~al~~L~~~------~I~~v~~v-----~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 344 (527)
T cd03335 276 NVVLTTGGIDDMCLKYFVEA------GAMAVRRV-----KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVV 344 (527)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEEeC-----CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEE
Confidence 99999999999999999874 47899977 57789999999999999874333 22345667899999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHH
Q 011729 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (478)
Q Consensus 278 ---i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~ 354 (478)
++++++++|++++++ ++|||+|||+|+.+++|++|+++||++++++
T Consensus 345 ~~~ig~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~ 393 (527)
T cd03335 345 QERIGDDELILIKGTKKR-------------------------------SSASIILRGANDFMLDEMERSLHDALCVVKR 393 (527)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 788899999988654 5799999999999999999999999999999
Q ss_pred HHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 011729 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (478)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~------- 421 (478)
++++| +|||||++|++++..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 394 ~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~ 473 (527)
T cd03335 394 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKK 473 (527)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 99999 9999999999999999998765 889999999999999999999999999999999 998762 2
Q ss_pred -CCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 422 -SSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 422 -~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
++++|||+.+| +++||++.|||||+.||.++|+.|+++|++||+|
T Consensus 474 ~~~~~Gid~~~g------------~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrI 519 (527)
T cd03335 474 HLKWYGLDLING------------KVRDNLEAGVLEPTVSKIKSLKFATEAAITILRI 519 (527)
T ss_pred cCceEeEECCCC------------cccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 34789999999 9999999999999999999999999999999997
No 20
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-76 Score=636.39 Aligned_cols=408 Identities=18% Similarity=0.219 Sum_probs=361.1
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|++.||+++++ + ++|++||+++||||||+|+||++||+++.++++ |+||..|++||+.|.+.++++
T Consensus 50 G~tIlk~l~~~hp~a~ll--~----~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (515)
T cd03338 50 GATILKQMSVLHPAAKML--V----ELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEI 123 (515)
T ss_pred HHHHHHhCcCcCHHHHHH--H----HHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4 778899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCCc----------eeEecCCCccceeEEEee
Q 011729 84 LDCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWENDL----------ITIFDRKALYNELNFVKG 145 (478)
Q Consensus 84 L~~~s~~v~--~~~~l~~vA~ts~~------~~~~la~li~~a~~~vg~~~~----------I~v~~g~~~~d~~~lv~G 145 (478)
|++++.+++ +.++|.++|++|++ +++.|++++++|+.+++.++. |....|++..| +++++|
T Consensus 124 L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~d-s~lv~G 202 (515)
T cd03338 124 LDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIED-TELVDG 202 (515)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhh-ceeeee
Confidence 999999986 67889999999998 457899999999999987653 44457888764 699999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEecccc-------------CCH-----------HHHHHHHHHHHhcCCCEE
Q 011729 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLL 201 (478)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i-------------~~~-----------~~i~~~le~i~~~~~~lv 201 (478)
++|+++|.+|++. +..++||+|+++++++ .++ +++.++++.+.+.|.|||
T Consensus 203 iv~~k~~~~~~~~------p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lv 276 (515)
T cd03338 203 LVFTQKASKKAGG------PTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVL 276 (515)
T ss_pred EEEeccccCcCCC------CccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999997631 1235566666654432 122 456788999999999999
Q ss_pred EEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe--
Q 011729 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT-- 279 (478)
Q Consensus 202 Ii~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~-- 279 (478)
|++++|++++++.++.|.+.+ .+|++|++. ++++|+|||++|||+++++ ++++++++||+|+.|++.
T Consensus 277 i~~~~i~~~~v~~l~~~~l~~-~~I~av~~~-----~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~ 345 (515)
T cd03338 277 LIQKSILRDAVSDLALHFLAK-LKIMVVKDI-----EREEIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSL 345 (515)
T ss_pred EECCCcccccccHHHHHHHHH-CCceEEecC-----CHHHHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEE
Confidence 999999888888888888776 889999976 6778999999999999996 888999999999999753
Q ss_pred -cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHc
Q 011729 280 -MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (478)
Q Consensus 280 -~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~ 358 (478)
+++++++.++.+ +++.|||+|||+|+.+++|+||+++||++++|+++++
T Consensus 346 g~~~~~~i~~~~~------------------------------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 346 GDGKIVKITGVKN------------------------------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred CCeEEEEEEecCC------------------------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 556888888753 1367999999999999999999999999999999999
Q ss_pred C-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 011729 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (478)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~ 432 (478)
| +|||||++|+++++.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g 475 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKG 475 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCC
Confidence 9 9999999999999999998664 889999999999999999999999999999999 999763 456899999999
Q ss_pred CcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 433 RWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 433 ~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
+++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 476 ------------~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~I 509 (515)
T cd03338 476 ------------AITNILEENVVQPLLVSTSAITLATETVRMILKI 509 (515)
T ss_pred ------------CccchhhcCceecHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999997
No 21
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.8e-76 Score=634.02 Aligned_cols=406 Identities=17% Similarity=0.208 Sum_probs=359.8
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|++.||+++++ +++|++||+++||||||++|||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 54 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 127 (536)
T TIGR02340 54 GATILKLLEVEHPAAKIL------VELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKY 127 (536)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred Hhcc-ccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhc---cCCc-------eeE--ecCCCccceeEE
Q 011729 84 LDCQ-ARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (478)
Q Consensus 84 L~~~-s~~v~--~~~~l~~vA~ts~~------~~~~la~li~~a~~~vg---~~~~-------I~v--~~g~~~~d~~~l 142 (478)
|+++ ++|++ +.+++.++|+++++ +++.|++++++|+..++ .+|. |.+ ..|++. +++++
T Consensus 128 L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~-~~s~~ 206 (536)
T TIGR02340 128 IKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSA-RESYL 206 (536)
T ss_pred HHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCc-cccEE
Confidence 9974 88887 67889999999987 46789999999999986 3342 333 478887 68999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCCHH------------------------HHHHHHHHHHhcCC
Q 011729 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSN------------------------VIRQASLPCMMQGQ 198 (478)
Q Consensus 143 v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~~~------------------------~i~~~le~i~~~~~ 198 (478)
++|++|+++|.+|.| +.+++||+|+++|++|+..+ .+.+.++.+++.|.
T Consensus 207 i~Gi~i~~~~~~~~m-------~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~ 279 (536)
T TIGR02340 207 VKGYALNCTRASQQM-------PKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGA 279 (536)
T ss_pred EEEEEEecccCCCCC-------cceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999998865 35789999999998764331 23466778888999
Q ss_pred CEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCC-CcCCCCCCCceeeeEEE
Q 011729 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (478)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~-~~~~~~~~~LG~~~~v~ 277 (478)
+||+++++|++.++++|..++ ++++++. ++++|+|||++|||+++++..++ ..+++++++||+|+.|+
T Consensus 280 ~lvi~~k~I~~~a~~~L~k~~------I~~i~rv-----~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 348 (536)
T TIGR02340 280 NVVLTTGGIDDMCLKYFVEAG------AMGVRRC-----KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVV 348 (536)
T ss_pred CEEEeCCCCcHHHHHHHHHCC------cEEEecC-----CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEE
Confidence 999999999999999988744 7899987 47779999999999999975443 23456777899999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHH
Q 011729 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (478)
Q Consensus 278 ---i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~ 354 (478)
+++++|++|++++++ ++|||+|||+|+.+++|++|+++||+|++|+
T Consensus 349 ~~~ig~~~~~~i~~~~~~-------------------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~ 397 (536)
T TIGR02340 349 EERIADDECILIKGTKGR-------------------------------KSASIILRGANDFMLDEMERSLHDALCVVKR 397 (536)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 788999999988655 3699999999999999999999999999999
Q ss_pred HHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 011729 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (478)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~------- 421 (478)
++++| ||||||++|++++..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 398 ~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~ 477 (536)
T TIGR02340 398 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKK 477 (536)
T ss_pred HhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccc
Confidence 99999 9999999999999999988664 889999999999999999999999999999999 998662 1
Q ss_pred -CCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 422 -SSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 422 -~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
..++|||+.+| ++.||++.|||||+.||.++|+.|+++|++||+|
T Consensus 478 ~~~~~Gid~~~g------------~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~I 523 (536)
T TIGR02340 478 HLKWYGLDLSNG------------KIRDNKEAGVLEPAVSKVKSLKFATEAAITILRI 523 (536)
T ss_pred cCceEeEEccCC------------ccccchhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 34689999999 9999999999999999999999999999999997
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-75 Score=630.88 Aligned_cols=401 Identities=19% Similarity=0.216 Sum_probs=354.1
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..|||++|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 65 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 138 (526)
T cd03339 65 GATILEKMDVDHQIAKLL------VELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEH 138 (526)
T ss_pred HHHHHHHhcccCHHHHHH------HHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-------CceeEe--cCCCccceeEEEe
Q 011729 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVK 144 (478)
Q Consensus 84 L~~~s~~v~----~~~~l~~vA~ts~~~------~~~la~li~~a~~~vg~~-------~~I~v~--~g~~~~d~~~lv~ 144 (478)
|+++++|++ +.+.|.++|++++++ .+.|++++++|+..+... ..|+++ .|++.. ++++++
T Consensus 139 L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-dS~~v~ 217 (526)
T cd03339 139 LEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLE-DTKLVK 217 (526)
T ss_pred HHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHH-Hcceee
Confidence 999999885 467899999998874 257899999999887431 124443 788875 689999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHH-----------HHHHHHHHHhcCCCE
Q 011729 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSL 200 (478)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~-------------i~~~~~-----------i~~~le~i~~~~~~l 200 (478)
|++|+++|.+|+|++ .++||+|++++.+ ++++++ +.++++++.+.|+||
T Consensus 218 Givi~~~~~~~~m~~-------~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 290 (526)
T cd03339 218 GIVIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANL 290 (526)
T ss_pred eEEEecccCCCCCCc-------eecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 999999999999865 3456666666532 556655 678899999999999
Q ss_pred EEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE--
Q 011729 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 278 (478)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i-- 278 (478)
||++++|++.++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|+.|+.
T Consensus 291 vi~~~~I~~~al~~L~~~~------I~av~~v~-----~~~LerIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ 354 (526)
T cd03339 291 VICQWGFDDEANHLLLQNG------LPAVRWVG-----GVEIELIAIATGGRIVPR-----FEDLSPEKLGKAGLVREIS 354 (526)
T ss_pred EEeCCCCCHHHHHHHHHCC------CEEEEeCC-----HHHHHHHHHHhCCEEecc-----hhhCChhhcccCceEEEEE
Confidence 9999999999999998755 57899873 556999999999999986 89999999999999873
Q ss_pred -e--cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHH
Q 011729 279 -T--MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (478)
Q Consensus 279 -~--~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a 355 (478)
+ +++++++++|+++ +.|||+|||+|+.+++|+||+++||++++|++
T Consensus 355 ig~~~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~ 403 (526)
T cd03339 355 FGTTKDKMLVIEGCPNS-------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNL 403 (526)
T ss_pred ecCCCcEEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4678999988764 46999999999999999999999999999999
Q ss_pred HHcC-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCeeEe
Q 011729 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLGYN 428 (478)
Q Consensus 356 ~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~----~~~~~G~d 428 (478)
+++| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|+.. ++.++|||
T Consensus 404 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 483 (526)
T cd03339 404 IRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGID 483 (526)
T ss_pred hhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeee
Confidence 9998 9999999999999999998664 789999999999999999999999999999999 999742 24579999
Q ss_pred CCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 429 PARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
+.+| +++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 484 ~~~g------------~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 521 (526)
T cd03339 484 CLGR------------GTNDMKEQKVFETLISKKQQILLATQVVKMILKI 521 (526)
T ss_pred cCCC------------ccCchhhcCceecHHHHHHHHHHHHHHHHHHhhh
Confidence 9999 9999999999999999999999999999999997
No 23
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.9e-75 Score=629.43 Aligned_cols=401 Identities=19% Similarity=0.206 Sum_probs=352.8
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..|||++|++.||++|++ +++|++||+++||||||+++||++||+++.+|++ |+||+.|++||+.|.+.++++
T Consensus 69 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 142 (532)
T TIGR02343 69 GATILSQMDVDNPIAKLM------VELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEH 142 (532)
T ss_pred HHHHHHHccCCCHHHHHH------HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc--CC-----ceeEe--cCCCccceeEEEe
Q 011729 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE--ND-----LITIF--DRKALYNELNFVK 144 (478)
Q Consensus 84 L~~~s~~v~----~~~~l~~vA~ts~~~------~~~la~li~~a~~~vg~--~~-----~I~v~--~g~~~~d~~~lv~ 144 (478)
|++++++++ +.+.|.++|++++++ .+.|++++++|+..+.. .+ .|+++ .|+++.| +++++
T Consensus 143 L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~d-s~~v~ 221 (532)
T TIGR02343 143 LEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLED-TKLIK 221 (532)
T ss_pred HHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCccc-ceeEe
Confidence 999999874 257899999998863 34689999999988743 11 24443 7888864 69999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEecc-----------c--cCCHHHH-----------HHHHHHHHhcCCCE
Q 011729 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNVI-----------RQASLPCMMQGQSL 200 (478)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~-----------~--i~~~~~i-----------~~~le~i~~~~~~l 200 (478)
|++|+++|.+|+|++ .+++|+|++++. + +++++++ .++++.+.+.|+||
T Consensus 222 Gi~i~~~~~~~~m~~-------~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~l 294 (532)
T TIGR02343 222 GIIIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANI 294 (532)
T ss_pred eEEEecCcCCCCCCe-------eecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 999999999999865 345666666653 3 5666655 78899999999999
Q ss_pred EEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE--
Q 011729 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 278 (478)
Q Consensus 201 vIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i-- 278 (478)
||++++|++.++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|+.|+.
T Consensus 295 vi~~~~I~~~al~~L~~~~------i~~v~~~~-----~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ 358 (532)
T TIGR02343 295 VICQWGFDDEANHLLLQND------LPAVRWVG-----GHELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREIS 358 (532)
T ss_pred EEeCCCccHHHHHHHHHCC------cEEEEcCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEE
Confidence 9999999999999999865 57899873 556999999999999996 89999999999999873
Q ss_pred -ec--ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHH
Q 011729 279 -TM--DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (478)
Q Consensus 279 -~~--~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a 355 (478)
+. ++++++++++++ .+|||+|||+|+.+++|+||+++||++++|++
T Consensus 359 ig~~~~~~~~i~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~ 407 (532)
T TIGR02343 359 FGTTKDRMLVIEQCKNS-------------------------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNL 407 (532)
T ss_pred ecCCcceEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 578999988765 35899999999999999999999999999999
Q ss_pred HHc-CCcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCeeEe
Q 011729 356 KEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLGYN 428 (478)
Q Consensus 356 ~~~-gvVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~----~~~~~G~d 428 (478)
+++ ++|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|+|
T Consensus 408 i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 487 (532)
T TIGR02343 408 IKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVD 487 (532)
T ss_pred HhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCee
Confidence 998 59999999999999999998765 888999999999999999999999999999999 988752 24579999
Q ss_pred CCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 429 PARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
+.+| +++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 488 ~~~g------------~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~i 525 (532)
T TIGR02343 488 CLGD------------GTNDMKEQGVFETLIGKKQQIQLATQLVRMILKI 525 (532)
T ss_pred CCCC------------ccccchhccCeecHHHHHHHHHHHHHHHHHHHhH
Confidence 9999 9999999999999999999999999999999986
No 24
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.6e-75 Score=625.61 Aligned_cols=404 Identities=16% Similarity=0.173 Sum_probs=362.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..|||++|+++||++|++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (522)
T cd03340 58 GATILKLLDIVHPAAKTL------VDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEK 131 (522)
T ss_pred HHHHHHHccccCHHHHHH------HHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC------HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCC---ceeEe--cCCCccceeEEEeeE
Q 011729 84 LDCQARKITT------FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITIF--DRKALYNELNFVKGM 146 (478)
Q Consensus 84 L~~~s~~v~~------~~~l~~vA~ts~~------~~~~la~li~~a~~~vg~~~---~I~v~--~g~~~~d~~~lv~G~ 146 (478)
|+++++++++ .+.|.++|+++++ +++.|++++++|+.++++++ .|.+. .|++.. ++++++|+
T Consensus 132 L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~-ds~lv~Gi 210 (522)
T cd03340 132 IKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLE-DSQLVNGV 210 (522)
T ss_pred HHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChh-hceeeeeE
Confidence 9999998864 4569999999876 46789999999999998765 34443 677775 58899999
Q ss_pred EEeccccCCccccccccceeeecCceEEEecccc-------------CCHHH-----------HHHHHHHHHhcCCCEEE
Q 011729 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNSNV-----------IRQASLPCMMQGQSLLV 202 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i-------------~~~~~-----------i~~~le~i~~~~~~lvI 202 (478)
+|+++|.+|+|.+.| ..++||+|+++|.++ +++.+ +.++++.+.+.|.++++
T Consensus 211 v~~k~~~~~~~~~~~----~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl 286 (522)
T cd03340 211 AFKKTFSYAGFEQQP----KKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVL 286 (522)
T ss_pred EEecccCccccccCC----ccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999885544 468999999999874 44433 56778888899999999
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 011729 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (478)
+++.|++.++++|..++ |+++++. ++++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 287 ~~~~i~d~a~~~l~~~~------I~~~~~v-----~~~~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig 350 (522)
T cd03340 287 SKLPIGDLATQYFADRD------IFCAGRV-----PEEDLKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVG 350 (522)
T ss_pred eCCCCcHHHHHHHHHCC------cEEEEeC-----CHHHHHHHHHHHCCEEeec-----cccCCccccccceEEEEEEEC
Confidence 99999999999888744 6888888 4667999999999999986 8899999999999997 67
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 011729 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (478)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g 359 (478)
++++++|.+|..+ ..+||++||+|+..++|.+|+++||++++|+++++|
T Consensus 351 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 399 (522)
T cd03340 351 GERYNIFTGCPKA-------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKND 399 (522)
T ss_pred CEEEEEEECCCCC-------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8889999998654 358999999999999999999999999999999997
Q ss_pred -CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CC-CCeeEeCCCC
Q 011729 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DS-SDLGYNPARG 432 (478)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~-~~~G~d~~~~ 432 (478)
||||||++|++++..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++ .++|||+.+|
T Consensus 400 ~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g 479 (522)
T cd03340 400 SVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNE 479 (522)
T ss_pred CEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCC
Confidence 9999999999999999998664 899999999999999999999999999999999 999763 33 5799999999
Q ss_pred CcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 433 RWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 433 ~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
+++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 480 ------------~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~i 513 (522)
T cd03340 480 ------------GIADNFEAFVWEPSLVKINALTAATEAACLILSV 513 (522)
T ss_pred ------------cccchhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999986
No 25
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.9e-75 Score=627.18 Aligned_cols=401 Identities=13% Similarity=0.152 Sum_probs=355.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..|||++|++.||+++++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIl~~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (525)
T TIGR02344 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSV 131 (525)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCC-----------ceeEe--cCCCccceeEE
Q 011729 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND-----------LITIF--DRKALYNELNF 142 (478)
Q Consensus 84 L~~~s~~v~--~~~~l~~vA~ts~~~------~~~la~li~~a~~~vg~~~-----------~I~v~--~g~~~~d~~~l 142 (478)
|++++++++ +.+.|.++|+++.+. ++.|++++++|+..+++++ .|+++ +|+++.| +++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~d-S~l 210 (525)
T TIGR02344 132 LEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIED-SCV 210 (525)
T ss_pred HHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHh-cCc
Confidence 999999886 567799999877543 4789999999999998653 14554 5888865 899
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCC-------------HHHHHHHHH-----------HHHhcCC
Q 011729 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNVIRQASL-----------PCMMQGQ 198 (478)
Q Consensus 143 v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~-------------~~~i~~~le-----------~i~~~~~ 198 (478)
++|++|++++.++.| +..++||+|++++++++. ++++.++++ ++.+.|.
T Consensus 211 v~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~ 283 (525)
T TIGR02344 211 LKGVMINKDVTHPKM-------RRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKP 283 (525)
T ss_pred ccceEEecccCCCCC-------ccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999777654 457899999999987754 456555544 7778888
Q ss_pred CEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee-eeEEE
Q 011729 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI 277 (478)
Q Consensus 199 ~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~-~~~v~ 277 (478)
+|+++.+.|++.+++.|.. .+|+++++. ++++|+|||++|||+++++ ++++++++||+ |+.|+
T Consensus 284 ~vIi~~k~I~dla~~~l~~------~~I~av~~v-----~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~ 347 (525)
T TIGR02344 284 DLVITEKGVSDLAQHYLLK------ANISAIRRV-----RKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFE 347 (525)
T ss_pred CEEEeCCCccHHHHHHHhH------CCceEEecC-----CHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEE
Confidence 8888889999998887775 457999877 6778999999999999986 88899999999 99887
Q ss_pred E---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHH
Q 011729 278 A---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (478)
Q Consensus 278 i---~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~ 354 (478)
+ +++++++|++++++ ..|||+|||+|+.+++|+||+++||++++|+
T Consensus 348 ~~~ig~~~~~~~~g~~~~-------------------------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 348 VKKIGDEYFTFFTECKDP-------------------------------KACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 66889999988765 3599999999999999999999999999999
Q ss_pred HHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCeeE
Q 011729 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGY 427 (478)
Q Consensus 355 a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~-~~~~G~ 427 (478)
+++++ ||||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++|+
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 476 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI 476 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeE
Confidence 99985 9999999999999999988664 889999999999999999999999999999999 999763 2 467999
Q ss_pred eCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 428 NPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 428 d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
|+.+| +++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 477 d~~~g------------~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 515 (525)
T TIGR02344 477 DGETG------------KIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRI 515 (525)
T ss_pred ECCCC------------ccccchhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 9999999999999999999999999999999986
No 26
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.3e-75 Score=627.35 Aligned_cols=400 Identities=14% Similarity=0.159 Sum_probs=349.1
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|++.||+++++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 60 G~tIlk~i~~~hP~akll------~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 133 (531)
T TIGR02346 60 AATILRELEVQHPAAKLL------VMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEV 133 (531)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc-ccCC---HHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCC--ce-----eEe--cCCCccceeEEEee
Q 011729 84 LDCQAR-KITT---FEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND--LI-----TIF--DRKALYNELNFVKG 145 (478)
Q Consensus 84 L~~~s~-~v~~---~~~l~~vA~ts~~-----~~~~la~li~~a~~~vg~~~--~I-----~v~--~g~~~~d~~~lv~G 145 (478)
|++++. ++++ .+.+.++|+++.+ +++.|++++++|+.++++++ .+ .+. .|++.. ++++++|
T Consensus 134 L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~-ds~li~G 212 (531)
T TIGR02346 134 LEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSIS-NSEVLKG 212 (531)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChh-hceeEee
Confidence 999986 6643 6779999877663 37889999999999998755 33 332 677775 7999999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEecccc-------------CCH-----------HHHHHHHHHHHhcCCCEE
Q 011729 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLL 201 (478)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i-------------~~~-----------~~i~~~le~i~~~~~~lv 201 (478)
++|++++. .+ +..++||+|++++.++ +++ +++.++++.+.+.|+|||
T Consensus 213 i~~~~~~~--~~-------~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lv 283 (531)
T TIGR02346 213 MVFNREAE--GS-------VKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVI 283 (531)
T ss_pred eEEeccCC--CC-------ceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 99999832 11 2356777777776542 232 346788999999999999
Q ss_pred EEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---
Q 011729 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA--- 278 (478)
Q Consensus 202 Ii~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i--- 278 (478)
|++++|++.+++.|.. .+|++||+|+++ +|+|||.+|||+++++ ++++++++||+|++|++
T Consensus 284 i~~~~I~d~~~~~l~~------~~I~av~~~~~~-----~l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~i 347 (531)
T TIGR02346 284 VTGGSVGDMALHYCEK------YNIMVLKIPSKF-----ELRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEI 347 (531)
T ss_pred EECCCcCHHHHHHHHH------CCcEEEecCCHH-----HHHHHHHHHCCEEecc-----cccCCHhHccccceEEEEEE
Confidence 9999999999997774 558999999644 5999999999999986 88899999999999974
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHc
Q 011729 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (478)
Q Consensus 279 ~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~ 358 (478)
++++++++.++.. .+++|||+|||+|+.+++|++|+++||++++|+++++
T Consensus 348 g~~~~~~i~~~~~------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~ 397 (531)
T TIGR02346 348 GGQKVTVFKQENG------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKD 397 (531)
T ss_pred CCEEEEEEEccCC------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4577888887532 2478999999999999999999999999999999999
Q ss_pred C-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 011729 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (478)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~ 432 (478)
| ||||||++|++++..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|+.. ++.++|||+.+|
T Consensus 398 ~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~ 477 (531)
T TIGR02346 398 NRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAE 477 (531)
T ss_pred CCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCC
Confidence 9 9999999999999999998664 789999999999999999999999999999999 999763 456789999999
Q ss_pred CcccccccCCCCC--cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 433 RWECFHFFSEPGN--YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 433 ~~~~~~~~~~~~~--~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
+ ++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 478 ------------~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (531)
T TIGR02346 478 ------------SDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRV 513 (531)
T ss_pred ------------CccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 8 599999999999999999999999999999987
No 27
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-74 Score=622.38 Aligned_cols=404 Identities=15% Similarity=0.156 Sum_probs=358.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|++.||+++++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 59 G~TIlk~i~~~hP~a~ll------~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 132 (522)
T TIGR02345 59 GATILKLLDIVHPAAKTL------VDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEK 132 (522)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCC----ceeE--ecCCCccceeEEEeeE
Q 011729 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND----LITI--FDRKALYNELNFVKGM 146 (478)
Q Consensus 84 L~~~s~~v~-----~~~~l~~vA~ts~~------~~~~la~li~~a~~~vg~~~----~I~v--~~g~~~~d~~~lv~G~ 146 (478)
|+++++|++ +.+.+.++|+++++ +++.|++++++|+.+++.++ .|.+ ..|++.. ++++++|+
T Consensus 133 L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~-ds~~v~Gi 211 (522)
T TIGR02345 133 LKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQ-DSVLVNGV 211 (522)
T ss_pred HHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHH-hcceecce
Confidence 999999987 44789999999876 46889999999999998642 2333 2788876 47899999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccC-------------CHHH-----------HHHHHHHHHhcCCCEEE
Q 011729 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSNV-----------IRQASLPCMMQGQSLLV 202 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~-------------~~~~-----------i~~~le~i~~~~~~lvI 202 (478)
+|+++|.+|+|.+.| ..++||+|+++|++++ ++++ +...++.+.+.|.++++
T Consensus 212 v~~~~~~~~~~~~~~----~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~ 287 (522)
T TIGR02345 212 AFKKTFSYAGFEQQP----KKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVL 287 (522)
T ss_pred EEecccCccccccCC----ceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 999999999986544 4689999999998763 2333 34556677788999999
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---e
Q 011729 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---T 279 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i---~ 279 (478)
+.++|++.++++|..+ +|++++++. +++++++|++|||+++++ ++++++++||+|+.|+. +
T Consensus 288 ~~~~i~d~~~~~L~~~------~I~~~~~v~-----~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~ 351 (522)
T TIGR02345 288 SKLPIGDLATQYFADH------NIFCAGRVS-----DEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIG 351 (522)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecCC-----HHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEEC
Confidence 9999999999988864 478899883 556999999999999986 88999999999999974 5
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHc-
Q 011729 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (478)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~- 358 (478)
++++++|.|++++ +.|||+|||+|+.+++|++|+++||++++|+++++
T Consensus 352 ~~r~~~~~g~~~~-------------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 400 (522)
T TIGR02345 352 SERYNYFTGCPHA-------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKAR 400 (522)
T ss_pred CeEEEEEEcCCCC-------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6789999887554 36999999999999999999999999999999997
Q ss_pred CCcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCC
Q 011729 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGR 433 (478)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~ 433 (478)
|||||||++|++++.+|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|
T Consensus 401 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~- 479 (522)
T TIGR02345 401 KIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTE- 479 (522)
T ss_pred CEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCC-
Confidence 69999999999999999988664 889999999999999999999999999999999 999763 445799999999
Q ss_pred cccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 434 WECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 434 ~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
++.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 480 -----------~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (522)
T TIGR02345 480 -----------DIGDNFENFVWEPLLVKKNALKAAFEAACTILSI 513 (522)
T ss_pred -----------cccchhhcCceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999986
No 28
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.8e-74 Score=616.56 Aligned_cols=400 Identities=18% Similarity=0.229 Sum_probs=354.0
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|++.||++|++ +++|++||+++||||||+|+||++||+++.++++ |+||..|++||+.|.+.++++
T Consensus 57 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03336 57 GATILKSIGVDNPAAKVL------VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREA 130 (517)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC---CceeEe--cCCCccceeEEEeeEE
Q 011729 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (478)
Q Consensus 84 L~~~s~~v~-----~~~~l~~vA~ts~~------~~~~la~li~~a~~~vg~~---~~I~v~--~g~~~~d~~~lv~G~~ 147 (478)
|+++++|++ +.+.|.++|+|+.+ +++.|++++++|+.+++.. ..|++. +|+++. ++++++|++
T Consensus 131 L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~-ds~l~~G~v 209 (517)
T cd03336 131 LLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLK-DSYLDEGFL 209 (517)
T ss_pred HHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCcc-ceEEEeeEE
Confidence 999999884 24679999986554 3578999999999998632 235554 588875 688999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccC--------------CHHHH-----------HHHHHHHHhcCCCEEE
Q 011729 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------NSNVI-----------RQASLPCMMQGQSLLV 202 (478)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~--------------~~~~i-----------~~~le~i~~~~~~lvI 202 (478)
+++++.++ ++..++||+|+++|.+++ +++++ ...++.+.+.|.++++
T Consensus 210 ~~~~~~~~--------~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~ 281 (517)
T cd03336 210 LDKKIGVN--------QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFI 281 (517)
T ss_pred EecccCCC--------CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99886432 235799999999998764 45444 3456778899999999
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 011729 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (478)
+++.|++.++++|.. .+|++||+|+ +++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 282 ~~~~I~~~~~~~l~~------~~I~av~~v~-----~~~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig 345 (517)
T cd03336 282 NRQLIYNYPEQLFAD------AGIMAIEHAD-----FDGVERLALVTGGEIAST-----FDHPELVKLGTCKLIEEIMIG 345 (517)
T ss_pred eCCCccHHHHHHHHH------CCcEEEecCC-----HHHHHHHHHHhCCEEecc-----cCCCCcccccccceEEEEEEC
Confidence 999999999998886 4479999995 546999999999999986 8899999999999986 46
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 011729 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (478)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g 359 (478)
++++++|.+|.++ +.|||+|||+|+.+++|.||+++||++++|+++++|
T Consensus 346 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 394 (517)
T cd03336 346 EDKLIRFSGVAAG-------------------------------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDT 394 (517)
T ss_pred CeEEEEEEccCCC-------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7889999987643 579999999999999999999999999999999998
Q ss_pred -CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCC
Q 011729 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGR 433 (478)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~ 433 (478)
+|||||++|+++|+.|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|
T Consensus 395 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g- 473 (517)
T cd03336 395 RVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKG- 473 (517)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCC-
Confidence 9999999999999999998765 899999999999999999999999999999999 999763 456799999999
Q ss_pred cccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 434 WECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 434 ~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
+++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 474 -----------~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 507 (517)
T cd03336 474 -----------TVGDMKELGITESFKVKRQVLLSASEAAEMILRV 507 (517)
T ss_pred -----------CccchhhcCceecHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999986
No 29
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.8e-74 Score=612.06 Aligned_cols=384 Identities=13% Similarity=0.164 Sum_probs=345.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|++.||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (480)
T cd03337 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKI 131 (480)
T ss_pred HHHHHHhccccChHHHHH------HHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--Cc---------eeEe--cCCCccceeEE
Q 011729 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--DL---------ITIF--DRKALYNELNF 142 (478)
Q Consensus 84 L~~~s~~v~--~~~~l~~vA~ts~~~------~~~la~li~~a~~~vg~~--~~---------I~v~--~g~~~~d~~~l 142 (478)
|++++++++ +.+.+.++|+++.++ ++.|++++++|+..++++ +. |+++ +|++.. ++++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~-ds~l 210 (480)
T cd03337 132 LEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIE-DSRV 210 (480)
T ss_pred HHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHH-hccc
Confidence 999999986 678899999998873 457999999999999754 21 4454 488875 5999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCC
Q 011729 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCT 222 (478)
Q Consensus 143 v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~ 222 (478)
++|++|++++.+|.| +.+++||+|++++++++. |+|++++|++.++++|..|
T Consensus 211 i~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~~---- 262 (480)
T cd03337 211 LDGVMLNKDVTHPKM-------RRRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVKA---- 262 (480)
T ss_pred ccceEEeccCCCCCC-------CcEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHHC----
Confidence 999999999988755 357899999999998775 8899999999999999885
Q ss_pred CccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee-eeEEE---EecceEEEEcCCCChhhHHHH
Q 011729 223 TEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI---ATMDNVVIIGGSGELVDIQER 298 (478)
Q Consensus 223 ~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~-~~~v~---i~~~~~~~~~g~~~~~~i~~~ 298 (478)
+|+++++. ++++|+|||++|||+++++ ++++++++||+ |+.++ +++++++++++++++
T Consensus 263 --~I~~v~~v-----~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~------ 324 (480)
T cd03337 263 --GITALRRV-----RKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP------ 324 (480)
T ss_pred --CcEEEEeC-----CHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC------
Confidence 47999987 5777999999999999986 88899999999 55554 355778999988664
Q ss_pred HHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHc-CCcCCchHHHHHHHHHHHh
Q 011729 299 CEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (478)
Q Consensus 299 ~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~-gvVpGGGa~e~~~s~~L~~ 377 (478)
+.|||++||+|+.+++|.||+++||++++++++++ ++|||||++|+++|.+|++
T Consensus 325 -------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~ 379 (480)
T cd03337 325 -------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSE 379 (480)
T ss_pred -------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHH
Confidence 46999999999999999999999999999999998 5999999999999999998
Q ss_pred hcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCeeEeCCCCCcccccccCCCCCcccccc
Q 011729 378 LQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGYNPARGRWECFHFFSEPGNYVDMFK 451 (478)
Q Consensus 378 ~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~-~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~ 451 (478)
++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++|+|+.+| +++||++
T Consensus 380 ~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g------------~i~d~~~ 447 (480)
T cd03337 380 KAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETG------------DIVDMKE 447 (480)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCC------------Ccccchh
Confidence 8765 899999999999999999999999999999999 999763 3 45799999999 9999999
Q ss_pred cCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 452 CGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 452 ~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
.|||||+.+|+++|+.|+++|++||+|
T Consensus 448 ~gV~dp~~vk~~~l~~A~e~a~~iL~i 474 (480)
T cd03337 448 LGIWDPLAVKAQTYKTAIEAACMLLRI 474 (480)
T ss_pred ccCeEcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999987
No 30
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=5.1e-74 Score=618.73 Aligned_cols=400 Identities=19% Similarity=0.235 Sum_probs=353.4
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..||||+|++.||+++++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 69 G~TIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 142 (533)
T PTZ00212 69 GATILKSVWLDNPAAKIL------VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKA 142 (533)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---CceeE--ecCCCccceeEEEeeEE
Q 011729 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMK 147 (478)
Q Consensus 84 L~~~s~~v~~-----~~~l~~vA~ts~~~------~~~la~li~~a~~~vg~~---~~I~v--~~g~~~~d~~~lv~G~~ 147 (478)
|+++++|+++ .++|.++|+|+.+. .+.|++++++|+..+... ..|.+ .+|+++. ++++++|++
T Consensus 143 L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~-ds~lv~G~v 221 (533)
T PTZ00212 143 LEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLR-DSYLEDGFI 221 (533)
T ss_pred HHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcc-ccEEEEeEE
Confidence 9999998864 46799999866642 467999999999888432 12444 3788875 688999999
Q ss_pred EeccccCCccccccccceeeecCceEEEecccc--------------CCHHHH-----------HHHHHHHHhcCCCEEE
Q 011729 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNSNVI-----------RQASLPCMMQGQSLLV 202 (478)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i--------------~~~~~i-----------~~~le~i~~~~~~lvI 202 (478)
+++++.++ ++..++||+|+++|.++ ++++++ ...++.+.+.|.++++
T Consensus 222 ~~~~~~~~--------~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv 293 (533)
T PTZ00212 222 LEKKIGVG--------QPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFI 293 (533)
T ss_pred EecccCCC--------CCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986442 24579999999999876 555443 2346778899999999
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 011729 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (478)
+++.|++.++++|..+ +|++||+++ +++++|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 294 ~~~~I~d~a~~~L~~~------~I~avr~v~-----~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig 357 (533)
T PTZ00212 294 NRQLIYNYPEQLFAEA------GIMAIEHAD-----FDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIG 357 (533)
T ss_pred eCCCccHHHHHHHHHC------CCEEEecCC-----HHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEEC
Confidence 9999999999988864 479999773 567999999999999986 8889999999999998 77
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 011729 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (478)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g 359 (478)
++++++|.+|.. ++.|||+|||+|+.+++|+||+++|||+++|+++++|
T Consensus 358 ~~~~~~~~~~~~-------------------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~ 406 (533)
T PTZ00212 358 EDKLIRFSGCAK-------------------------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDT 406 (533)
T ss_pred CeEEEEEEccCC-------------------------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 889999998753 3579999999999999999999999999999999997
Q ss_pred -CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCC
Q 011729 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGR 433 (478)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~ 433 (478)
+|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++ +++.++|||+.+|
T Consensus 407 ~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g- 485 (533)
T PTZ00212 407 RVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKG- 485 (533)
T ss_pred CEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCC-
Confidence 9999999999999999998764 889999999999999999999999999999999 99975 3456799999999
Q ss_pred cccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 434 WECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 434 ~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
++.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 486 -----------~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 519 (533)
T PTZ00212 486 -----------TVGDMKELGITESYKVKLSQLCSATEAAEMILRV 519 (533)
T ss_pred -----------cccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999986
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.1e-73 Score=610.54 Aligned_cols=400 Identities=18% Similarity=0.211 Sum_probs=351.2
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..|||++|++.||++|++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~i~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02341 58 GATILKSIGVDNPAAKVL------VDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEA 131 (519)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---CceeEe--cCCCccceeEEEeeEE
Q 011729 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (478)
Q Consensus 84 L~~~s~~v~~-----~~~l~~vA~ts~~~------~~~la~li~~a~~~vg~~---~~I~v~--~g~~~~d~~~lv~G~~ 147 (478)
|+++++|+++ .++|.++|+|+++. .+.|+++.++|+..+... ..|++. +|+++. ++++++|++
T Consensus 132 L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~-~s~l~~G~v 210 (519)
T TIGR02341 132 LKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLN-DSYLDEGFL 210 (519)
T ss_pred HHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcc-cceEEeeEE
Confidence 9999999853 46799999888763 356889999999887321 236665 688875 688999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccCC--------------HHHH-----------HHHHHHHHhcCCCEEE
Q 011729 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN--------------SNVI-----------RQASLPCMMQGQSLLV 202 (478)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~--------------~~~i-----------~~~le~i~~~~~~lvI 202 (478)
+++++.++ ++..++||+|+++|.+++. ++++ ..+++.+.+.|.++++
T Consensus 211 ~~~~~~~~--------~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~ 282 (519)
T TIGR02341 211 LEKKIGVN--------QPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFI 282 (519)
T ss_pred EeccCCCC--------CceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99886432 2347899999999987652 3222 2346678899999999
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 011729 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (478)
+++.|++.++++|.. .+|+++++++ +++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 283 ~~~~I~~~~~~~l~~------~~I~~v~~~~-----~~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig 346 (519)
T TIGR02341 283 NRQLIYNYPEQLFAD------AGVMAIEHAD-----FEGIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIG 346 (519)
T ss_pred ECCcCCHHHHHHHHH------CCcEEEecCC-----HHHHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEEC
Confidence 999999999998876 4589999995 446999999999999996 8889999999999886 46
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHc-
Q 011729 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (478)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~- 358 (478)
++++++|.+|+++ +.|||+|||+|+.+++|+||+++||++++|+++++
T Consensus 347 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~ 395 (519)
T TIGR02341 347 EDKLLKFSGVKLG-------------------------------EACTIVLRGATQQILDESERSLHDALCVLSQTVKES 395 (519)
T ss_pred CEEEEEEEcCCCC-------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7889999988643 57999999999999999999999999999999998
Q ss_pred CCcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCC
Q 011729 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGR 433 (478)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~ 433 (478)
+||||||++|++++..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. +..++|||+.+|
T Consensus 396 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g- 474 (519)
T TIGR02341 396 RTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEG- 474 (519)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCC-
Confidence 59999999999999999988765 889999999999999999999999999999999 999763 456789999999
Q ss_pred cccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 434 WECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 434 ~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
+++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 475 -----------~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 508 (519)
T TIGR02341 475 -----------EIADMRKLGIIESYKVKRAVVSSAAEAAEVILRV 508 (519)
T ss_pred -----------cccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999986
No 32
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-74 Score=561.94 Aligned_cols=403 Identities=16% Similarity=0.164 Sum_probs=359.6
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011729 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~L 84 (478)
-||||.+++.||++|.+ | ++|++||.||||||||||+||+|+|+++..+++ |+||+.|+++|+.|...+++.|
T Consensus 63 ATIlKlldivhPaaktl--V----dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki 136 (543)
T KOG0361|consen 63 ATILKLLDIVHPAAKTL--V----DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKI 136 (543)
T ss_pred HHHHHHHhhcChhHHHH--H----HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999 6 666699999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--C----HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC---CceeE--ecCCCccceeEEEeeEE
Q 011729 85 DCQARKIT--T----FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMK 147 (478)
Q Consensus 85 ~~~s~~v~--~----~~~l~~vA~ts~~------~~~~la~li~~a~~~vg~~---~~I~v--~~g~~~~d~~~lv~G~~ 147 (478)
+++++.++ + ++.|+++|.|+.+ ..++|++|+++|+..++.+ ..|.| .+||+++| |.+++|+.
T Consensus 137 ~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~d-S~lv~GVA 215 (543)
T KOG0361|consen 137 KELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMED-SLLVNGVA 215 (543)
T ss_pred HHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccch-hhhcccee
Confidence 99998876 2 3567888888765 3578999999999998743 23444 48999975 78999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccc-------------cCCHHH-----------HHHHHHHHHhcCCCEEEE
Q 011729 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSLLVV 203 (478)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~-------------i~~~~~-----------i~~~le~i~~~~~~lvIi 203 (478)
|.+.|....|. .++..+.||+|+++|.. ++++++ +.+.|++|..+|.++|+.
T Consensus 216 FkKtFsYAGfE----qqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLS 291 (543)
T KOG0361|consen 216 FKKTFSYAGFE----QQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLS 291 (543)
T ss_pred eeehccccchh----hCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEe
Confidence 99999877764 45568999999999864 334443 457789999999999998
Q ss_pred ecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Eec
Q 011729 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (478)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~---i~~ 280 (478)
.-.|.+.+.++|+...+ .||-|.| +++|.|+..+|||++.++ .+++.++.||.|..++ ++.
T Consensus 292 kLpIGD~ATQyFAdrdi-----FCAGRV~------~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C~~FeE~QvG~ 355 (543)
T KOG0361|consen 292 KLPIGDLATQYFADRDI-----FCAGRVP------EEDLNRVMQACGGSIQTT-----VSDIKEEVLGTCALFEERQVGG 355 (543)
T ss_pred cccchHHHHHHhhccCc-----eecCcCC------HHHHHHHHHhcCcchhhh-----hhhcchhhcchhhhHHHHhhcc
Confidence 88999999999986543 4666666 678999999999999986 7889999999999996 789
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC-
Q 011729 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (478)
Q Consensus 281 ~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g- 359 (478)
++|.+|+||+.. ++||+++||+-++.++|.+|++|||++.+|.|+++.
T Consensus 356 eRyN~Fegcp~a-------------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~ 404 (543)
T KOG0361|consen 356 ERYNLFEGCPKA-------------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS 404 (543)
T ss_pred hhhhhhcCCCcc-------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence 999999999754 479999999999999999999999999999999976
Q ss_pred CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCCc
Q 011729 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGRW 434 (478)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~~ 434 (478)
+|+|||+.||++|+.|++|+.. .+++|+-+.+|++|||.||++||+|||+|...+ ++|+. +|..|+|+|..+.
T Consensus 405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e-- 482 (543)
T KOG0361|consen 405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTE-- 482 (543)
T ss_pred EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeeccc--
Confidence 9999999999999999999987 899999999999999999999999999999999 99977 4778999999999
Q ss_pred ccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 435 ECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 435 ~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
.+.|+++.+||||..||.+++..|+|+|++||+|
T Consensus 483 ----------~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsv 516 (543)
T KOG0361|consen 483 ----------GIADNFEKFVWEPSIVKINAITAATEAACLILSV 516 (543)
T ss_pred ----------chhhHHHhhccChHHHHHHHHHHHHHhhhheEeh
Confidence 9999999999999999999999999999999975
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=6.4e-72 Score=594.39 Aligned_cols=384 Identities=27% Similarity=0.353 Sum_probs=348.2
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..+|||+|++.||+++++ ++++++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hp~a~ll------~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (464)
T cd00309 50 GATILKEIEVEHPAAKLL------VEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEI 123 (464)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc--cCCHHHHHHHHHHhcC------CChhHHHHHHHHHHhhcc------CCceeEe--cCCCccceeEEEeeEE
Q 011729 84 LDCQARK--ITTFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMK 147 (478)
Q Consensus 84 L~~~s~~--v~~~~~l~~vA~ts~~------~~~~la~li~~a~~~vg~------~~~I~v~--~g~~~~d~~~lv~G~~ 147 (478)
|++++.+ ..+.+++.++|+++++ +++.+++++++|+.++++ .+.|+++ .|++.. ++++++|++
T Consensus 124 L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~-ds~li~Gi~ 202 (464)
T cd00309 124 LKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLE-DSELVVGMV 202 (464)
T ss_pred HHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcc-cceeeeeEE
Confidence 9999998 5577899999999987 578899999999999987 5677776 566664 688999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEE
Q 011729 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVC 227 (478)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~ 227 (478)
|+++|.+|+|+ ..++||+|+++|++|+. |+++.++|++.++++|.. .+|+
T Consensus 203 ~~~~~~~~~m~-------~~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~------~~I~ 252 (464)
T cd00309 203 FDKGYLSPYMP-------KRLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLAK------LGIM 252 (464)
T ss_pred EecCCCCCCCc-------eeecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHHH------CCeE
Confidence 99999999883 47999999999999886 666666799999998887 5589
Q ss_pred EEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHH
Q 011729 228 IIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TMDNVVIIGGSGELVDIQERCEQLRS 304 (478)
Q Consensus 228 avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i---~~~~~~~~~g~~~~~~i~~~~~~l~~ 304 (478)
++++. ++++|+|||++|||+++++ ++++++++||+|+.|++ +++++++|.++..+
T Consensus 253 ~v~~~-----~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------ 310 (464)
T cd00309 253 AVRRV-----RKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG------------ 310 (464)
T ss_pred EEEeC-----CHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEcCeeEEEEEecCCC------------
Confidence 99987 5778999999999999986 78888899999999975 45678888876432
Q ss_pred HhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHc-CCcCCchHHHHHHHHHHHhhcCC-C
Q 011729 305 TIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-N 382 (478)
Q Consensus 305 ~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~-gvVpGGGa~e~~~s~~L~~~~~~-~ 382 (478)
+.|||+|||+|+.+++|+||+++||++++|+++++ ++|||||++|+++++.|++++.. +
T Consensus 311 -------------------~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~ 371 (464)
T cd00309 311 -------------------KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLP 371 (464)
T ss_pred -------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccc
Confidence 56999999999999999999999999999999998 59999999999999999988764 8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCCcccccccCCCCCcccccccCCcccc
Q 011729 383 SDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPL 458 (478)
Q Consensus 383 ~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~ 458 (478)
+++++++++|++||+.||++|++|||+|+.++ .+|++. +..++|+|..+| ++.||++.|||||+
T Consensus 372 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~------------~~~d~~~~gI~dp~ 439 (464)
T cd00309 372 GKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETG------------EIVDMKEAGIIDPL 439 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCC------------cEeehhhccCeecH
Confidence 99999999999999999999999999999999 999763 235789999999 99999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 011729 459 KHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 459 ~v~~~al~~A~~~A~~iL~i 478 (478)
.||+++|+.|+++|++||+|
T Consensus 440 ~vk~~~l~~A~e~a~~iL~i 459 (464)
T cd00309 440 KVKRQALKSATEAASLILTI 459 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999986
No 34
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-71 Score=592.56 Aligned_cols=388 Identities=17% Similarity=0.197 Sum_probs=341.3
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
..|||++|++.||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~l~~~hP~a~ll------~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (472)
T cd03341 50 AATILRELEVQHPAAKLL------VMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEI 123 (472)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4888899999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc-cC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccC--Cce-----eEe--cCCCccceeEEEee
Q 011729 84 LDCQARK-IT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEN--DLI-----TIF--DRKALYNELNFVKG 145 (478)
Q Consensus 84 L~~~s~~-v~---~~~~l~~vA~ts~~-----~~~~la~li~~a~~~vg~~--~~I-----~v~--~g~~~~d~~~lv~G 145 (478)
|++++.+ ++ +.+.+.++++++.+ +++.|++++++|+.+++++ |.+ ++. +|++.. ++++++|
T Consensus 124 L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~-ds~lv~G 202 (472)
T cd03341 124 LEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLE-DSKVVRG 202 (472)
T ss_pred HHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcc-cceEEee
Confidence 9999865 43 35668888877653 4678999999999999865 433 332 688876 4799999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCcc
Q 011729 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (478)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~ 225 (478)
++|++.+. .+...++||+|++++.+++. |+||||++++|++.++++|.. .+
T Consensus 203 iv~~~~~~---------~~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~l~~------~~ 253 (472)
T cd03341 203 MVFKREPE---------GSVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHYCNK------YG 253 (472)
T ss_pred EEEccccC---------CCceeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHHHHH------CC
Confidence 99987532 12357899999999999886 889999999999999997664 56
Q ss_pred EEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHH
Q 011729 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQL 302 (478)
Q Consensus 226 v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~~---~~~~~~~g~~~~~~i~~~~~~l 302 (478)
|+++|+|+ +++|+|||++|||+++++ ++++++++||+|+.|++.+ +++++|.++++.
T Consensus 254 I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------- 313 (472)
T cd03341 254 IMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED---------- 313 (472)
T ss_pred eEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------
Confidence 89999995 556999999999999986 7888889999999998654 889999887531
Q ss_pred HHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHhhcCC
Q 011729 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (478)
Q Consensus 303 ~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~ 381 (478)
++.|||+|||+|+.+++|+||+++||++++|+++++| +|||||++|++++..|++++..
T Consensus 314 --------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~ 373 (472)
T cd03341 314 --------------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEK 373 (472)
T ss_pred --------------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhc
Confidence 3679999999999999999999999999999999999 9999999999999999988664
Q ss_pred -ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCCcccccccCCCCCcccccccCCcc
Q 011729 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVD 456 (478)
Q Consensus 382 -~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~d 456 (478)
++++++++++|++||+.||++|++|||+|+.++ .+|+. .++.++|||+.+| ..++.||++.||||
T Consensus 374 ~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g----------~~~~~d~~~~gI~d 443 (472)
T cd03341 374 TPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESG----------DEGTKDAKEAGIFD 443 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCC----------CCCccChhhcccee
Confidence 789999999999999999999999999999999 99865 3356799998866 02689999999999
Q ss_pred ccccHHHHHHHHHHHHHHHhcC
Q 011729 457 PLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 457 p~~v~~~al~~A~~~A~~iL~i 478 (478)
|+.||+++|+.|+++|++||+|
T Consensus 444 p~~vk~~~l~~A~e~a~~iL~i 465 (472)
T cd03341 444 HLATKKWAIKLATEAAVTVLRV 465 (472)
T ss_pred cHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999987
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=4.1e-67 Score=559.74 Aligned_cols=401 Identities=21% Similarity=0.327 Sum_probs=357.8
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
+.+|++++++.||+++++ ++++++||+++||||||+++|+++||+++.+++. |+||..|++||+.|.+.+++.
T Consensus 31 g~tIl~~l~~~~P~~~ll------~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~ 104 (485)
T PF00118_consen 31 GATILKSLKINHPIAKLL------VEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEY 104 (485)
T ss_dssp HHHHHHHSTBSSHHHHHH------HHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhccchhhhH------HHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence 568999999999999998 4788899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCH-HHHHHHHHHhcCCC------hhHHHHHHHHHHhhccC---CceeE--ecCCCccceeEEEeeEEEecc
Q 011729 84 LDCQARKITTF-EEIAQVGTTAANGD------GEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMKLEWG 151 (478)
Q Consensus 84 L~~~s~~v~~~-~~l~~vA~ts~~~~------~~la~li~~a~~~vg~~---~~I~v--~~g~~~~d~~~lv~G~~~~~g 151 (478)
|+++++++++. +.++++|+++++++ +.|++++++|+..+..+ +.+.+ ..|++. +++++++|++|+++
T Consensus 105 l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~-~dS~li~Giv~~~~ 183 (485)
T PF00118_consen 105 LEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSI-SDSELINGIVLDKG 183 (485)
T ss_dssp HHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSS-GGEEEESEEEESSS
T ss_pred hhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhhccccc-cccccccceeeecc
Confidence 99999998866 89999999999876 78999999999433211 12332 356666 56899999999999
Q ss_pred ccCCccccccccceeeecCceEEEeccccCCHHH-----------------------HHHHHHHHHhcCCCEEEEecCcc
Q 011729 152 LKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-----------------------IRQASLPCMMQGQSLLVVAEDVE 208 (478)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~~~~-----------------------i~~~le~i~~~~~~lvIi~~~i~ 208 (478)
|.++.|+ ..+++|+|++++.+|+..+. +.++++++.+.|.|+||++++|+
T Consensus 184 ~~~~~~~-------~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~ 256 (485)
T PF00118_consen 184 FSSPNMP-------KKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSID 256 (485)
T ss_dssp BSSTTSB-------SEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBT
T ss_pred ccccccc-------cccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccc
Confidence 9988543 46799999999998876655 88999999999999999999999
Q ss_pred hhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE---EEecceEEE
Q 011729 209 NEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVI 285 (478)
Q Consensus 209 ~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v---~i~~~~~~~ 285 (478)
+.+++.|..|+ +.+++.. ++++|++||.+|||+++++ +++++++++|+|+.+ +++++++++
T Consensus 257 ~~~l~~l~~~~------I~~i~~v-----~~~~l~~i~~~tg~~ii~~-----~~~l~~~~lG~~~~v~~~~i~~~~~~~ 320 (485)
T PF00118_consen 257 DEALQYLNKNG------ILVIRRV-----SKEDLERIARATGASIISS-----LDDLSDEDLGFCKSVEEREIGNKKYIF 320 (485)
T ss_dssp HHHHHHHHHCT------HEEESSE-----HHHHHHHHHHHHTSBEBSS-----CGGSTGGGSEEEEEEEEEEETSSEEEE
T ss_pred cccchhhhhhh------hhccccc-----hHHHHHhhhcccCCcEecc-----cccccchhhhhhhhhhhcccccccccc
Confidence 99999998765 5777766 5677999999999999986 788888889999999 678999999
Q ss_pred EcC--CCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcC
Q 011729 286 IGG--SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVP 362 (478)
Q Consensus 286 ~~g--~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g-vVp 362 (478)
+++ + +.++.+||+|||+|+.+++|++|+++||++++|++++++ +||
T Consensus 321 ~~~~~~-------------------------------~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp 369 (485)
T PF00118_consen 321 IEGIGC-------------------------------LSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVP 369 (485)
T ss_dssp EEEHSE-------------------------------SSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred cccccc-------------------------------cccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceee
Confidence 984 3 234789999999999999999999999999999999965 999
Q ss_pred CchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCeeEeCCCCCccccc
Q 011729 363 GSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPARGRWECFH 438 (478)
Q Consensus 363 GGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~--~~~~~~G~d~~~~~~~~~~ 438 (478)
|||++|++++.+|++++.. ++++++++++|++||+.||++|++|||+|+.++ ++|.. ..++++|||+.+|
T Consensus 370 GGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~------ 443 (485)
T PF00118_consen 370 GGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTG------ 443 (485)
T ss_dssp TTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTT------
T ss_pred cCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCC------
Confidence 9999999999999888765 889999999999999999999999999999999 99987 3456899999999
Q ss_pred ccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 439 FFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 439 ~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
++.||++.|||||+.+|+++++.|+++|++||+|
T Consensus 444 ------~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~i 477 (485)
T PF00118_consen 444 ------EIVDMKEAGILDPLLVKISALKSAVEIASLILRI 477 (485)
T ss_dssp ------EEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred ------ceeccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-66 Score=508.73 Aligned_cols=399 Identities=19% Similarity=0.249 Sum_probs=350.3
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011729 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~L 84 (478)
-+|||++.+.||++|+| | ++|+.||+|+|||||||+|||++||++|.+|+. .+||+.|+.||++|...+++.|
T Consensus 63 AtILksi~vDnpaAkvL--v----~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL 136 (527)
T KOG0363|consen 63 ATILKSIGVDNPAAKVL--V----DISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEAL 136 (527)
T ss_pred HHHHHhcCCCCchhhhe--e----ccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999 5 677799999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccCC-----HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCCc---eeE--ecCCCccceeEEEeeEEE
Q 011729 85 DCQARKITT-----FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWENDL---ITI--FDRKALYNELNFVKGMKL 148 (478)
Q Consensus 85 ~~~s~~v~~-----~~~l~~vA~ts~~------~~~~la~li~~a~~~vg~~~~---I~v--~~g~~~~d~~~lv~G~~~ 148 (478)
.+.++...+ +++|.++|+|++. ..+.|+++.++|+.++...++ |.+ +.||++.| +.+-+|+.+
T Consensus 137 ~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~d-SfLDeGFlL 215 (527)
T KOG0363|consen 137 TKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLED-SFLDEGFLL 215 (527)
T ss_pred HHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCcccc-cccccccee
Confidence 998876542 4789999988764 256899999999999854432 443 47888865 678888888
Q ss_pred eccccCCccccccccceeeecCceEEEeccccC--------------CH-----------HHHHHHHHHHHhcCCCEEEE
Q 011729 149 EWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------NS-----------NVIRQASLPCMMQGQSLLVV 203 (478)
Q Consensus 149 ~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~--------------~~-----------~~i~~~le~i~~~~~~lvIi 203 (478)
++.+-. .++.+++||+||+.|++.. +. +.+...+++|.+.|+|.+|-
T Consensus 216 ~K~igv--------~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiN 287 (527)
T KOG0363|consen 216 DKKIGV--------NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFIN 287 (527)
T ss_pred ccccCC--------CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEee
Confidence 875421 1234789999999986422 11 24678899999999999998
Q ss_pred ecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Eec
Q 011729 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (478)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~---i~~ 280 (478)
.+-|-+.+.+.|.- .+|++|..++|.. +|||+..|||.++|+ +++++..+||+|+.++ +++
T Consensus 288 RQLiYnyPeqLf~d------agi~aIEHADFdG-----iERLalvtGGeI~ST-----Fd~p~~~klG~C~~IeeimiGe 351 (527)
T KOG0363|consen 288 RQLIYNYPEQLFAD------AGIMAIEHADFDG-----IERLALVTGGEIVST-----FDNPELVKLGECDLIEEIMIGE 351 (527)
T ss_pred hhHhhcCHHHHHhh------cCcceeecccchh-----HHHHhhcccceeeec-----cCCcchhccccchhhHHHhcCc
Confidence 88888888887774 4579999998764 899999999999997 9999999999999885 799
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC-
Q 011729 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (478)
Q Consensus 281 ~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g- 359 (478)
+++.-|.|+.- |..|||++||+|++.+||.||++|||||++...+++.
T Consensus 352 d~li~FSGv~~-------------------------------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esr 400 (527)
T KOG0363|consen 352 DKLIKFSGVKL-------------------------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESR 400 (527)
T ss_pred cceeeeccccc-------------------------------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 99999999853 4469999999999999999999999999999888875
Q ss_pred CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCCc
Q 011729 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGRW 434 (478)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~~ 434 (478)
+|.|||++|+-+++.+.+++.. +|++..++.+|++||..+|.+||.|||||+.++ ++|++. |..++|+|+++|
T Consensus 401 vv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G-- 478 (527)
T KOG0363|consen 401 VVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNG-- 478 (527)
T ss_pred eeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccC--
Confidence 9999999999999999998876 999999999999999999999999999999999 999884 567899999999
Q ss_pred ccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 435 ECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 435 ~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
++.||.+.||+|++++|+..+.+|.|+|.+||+.
T Consensus 479 ----------~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrv 512 (527)
T KOG0363|consen 479 ----------EIGDMRELGIVESLKVKQAVVSSASEAAEMILRV 512 (527)
T ss_pred ----------chhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 9999999999999999999999999999999974
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-67 Score=512.51 Aligned_cols=413 Identities=19% Similarity=0.213 Sum_probs=352.4
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011729 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~L 84 (478)
-||||.|.+.||++||| | ++|+.||.++||||||||+|||+||+.+.+|++ |+||+.|...|+.|.+.++++|
T Consensus 69 aTILk~m~vlhP~akmL--v----elS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il 142 (534)
T KOG0358|consen 69 ATILKQMNVLHPAAKML--V----ELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDIL 142 (534)
T ss_pred HHHHHHHhhhChHHHHH--H----HhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHH
Confidence 58999999999999999 5 666799999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhcc-CC-------ceeE--ecCCCccceeEEEeeE
Q 011729 85 DCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE-ND-------LITI--FDRKALYNELNFVKGM 146 (478)
Q Consensus 85 ~~~s~~v~--~~~~l~~vA~ts~~------~~~~la~li~~a~~~vg~-~~-------~I~v--~~g~~~~d~~~lv~G~ 146 (478)
.+|+.|++ +++.|.+-|+||+| ++..++.+.++|+.++-. +. .|++ +.||+. |++++++|+
T Consensus 143 ~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtv-dDte~i~gl 221 (534)
T KOG0358|consen 143 DEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTV-DDTELIKGL 221 (534)
T ss_pred HhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCcc-chhhhhcce
Confidence 99999876 67779899999886 356799999999998743 21 2444 368877 579999999
Q ss_pred EEeccccCCcccccccccee-----eecCceEEEecc-ccCCH-----------HHHHHHHHHHHhcCCCEEEEecCcch
Q 011729 147 KLEWGLKSPYFFTHKNKKEC-----VLDGALVLIYDT-KISNS-----------NVIRQASLPCMMQGQSLLVVAEDVEN 209 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~-----~l~~~~Ili~d~-~i~~~-----------~~i~~~le~i~~~~~~lvIi~~~i~~ 209 (478)
+|++......-++..++..+ .++.||--+-+. -++++ +.+++++++|+++|+++++++++|-.
T Consensus 222 vl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILR 301 (534)
T KOG0358|consen 222 VLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILR 301 (534)
T ss_pred EEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHH
Confidence 99876443223332222211 234443111111 02333 24678999999999999999999999
Q ss_pred hhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE----ecceEEE
Q 011729 210 EVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA----TMDNVVI 285 (478)
Q Consensus 210 ~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i----~~~~~~~ 285 (478)
++++.|+.|.+.. +++++||..+ ++++|.+|+.+|++++++ ++.++++.||+++.++. ++++++-
T Consensus 302 davsDLAlHfL~k-lkimvikdie-----Rediefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk 370 (534)
T KOG0358|consen 302 DAVSDLALHFLAK-LKIMVIKDIE-----REDIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVK 370 (534)
T ss_pred HHHHHHHHHHHHh-CcEEEEcccc-----HhhHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEE
Confidence 9999999888766 8899999874 456999999999999997 89999999999999863 4567888
Q ss_pred EcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCc
Q 011729 286 IGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGS 364 (478)
Q Consensus 286 ~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g-vVpGG 364 (478)
+.|+.++ |.+++|++||+++..++|.+|++|||||++|+.++.. .+|||
T Consensus 371 ~tg~~n~------------------------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GG 420 (534)
T KOG0358|consen 371 ITGIQNA------------------------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGG 420 (534)
T ss_pred EEEeecC------------------------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCC
Confidence 8876543 5789999999999999999999999999999999965 99999
Q ss_pred hHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCCcccccc
Q 011729 365 GVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGRWECFHF 439 (478)
Q Consensus 365 Ga~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~~~~~~~ 439 (478)
|+.|++++..|.+++.. .|.+.|++++|++|||.+|++||+|||++|..+ ..|++ +|..+.|+|+++|
T Consensus 421 GapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg------- 493 (534)
T KOG0358|consen 421 GAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKG------- 493 (534)
T ss_pred CCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecc-------
Confidence 99999999999999876 889999999999999999999999999999999 99987 4668899999999
Q ss_pred cCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 440 FSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 440 ~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
.+.||++..|+.|+.|-.++++.|+|.+.+||+|
T Consensus 494 -----~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKI 527 (534)
T KOG0358|consen 494 -----GITNILEENVVQPLLVSISAITLATETVRSILKI 527 (534)
T ss_pred -----cchhhHHHhcccceeeeHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999987
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-59 Score=472.76 Aligned_cols=404 Identities=16% Similarity=0.212 Sum_probs=351.1
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011729 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~L 84 (478)
-+||+.+.+.||++|+| | .+++.||+|+|||||+|+++|++||+++.+|+. ++||+.|+.||+.|+..+++++
T Consensus 62 AtiL~~l~V~HPa~KiL--v----elaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i 135 (545)
T KOG0360|consen 62 ATILSLLEVEHPAAKVL--V----ELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYI 135 (545)
T ss_pred HHHHHhhhhcchHHHHH--H----HHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHh
Confidence 48999999999999999 5 666799999999999999999999999999999 9999999999999999999999
Q ss_pred hc-cccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhcc---CC-------ceeEe--cCCCccceeEEE
Q 011729 85 DC-QARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE---ND-------LITIF--DRKALYNELNFV 143 (478)
Q Consensus 85 ~~-~s~~v~--~~~~l~~vA~ts~~------~~~~la~li~~a~~~vg~---~~-------~I~v~--~g~~~~d~~~lv 143 (478)
.+ ++.|++ ..+-|.++|+++.+ ..++|++++++|+..+.. +| .+.|- .|.+. .+|.++
T Consensus 136 ~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~-~eS~l~ 214 (545)
T KOG0360|consen 136 TEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQ-IESMLL 214 (545)
T ss_pred hccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccc-hhheee
Confidence 86 567776 45789999998774 357999999999988632 23 13332 56665 468899
Q ss_pred eeEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHH-----------HHHHHHHHhcCCC
Q 011729 144 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVI-----------RQASLPCMMQGQS 199 (478)
Q Consensus 144 ~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~-------------i~~~~~i-----------~~~le~i~~~~~~ 199 (478)
.|+.++....+..|+ .++.|+||.++|+. |.+++++ ++.++++..+|++
T Consensus 215 ~GyaLnc~~asq~m~-------~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~gan 287 (545)
T KOG0360|consen 215 PGYALNCSVASQMMP-------LRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGAN 287 (545)
T ss_pred cceeeeccHhhhccc-------cccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCc
Confidence 999999987776553 46779999999975 3455432 3556788899999
Q ss_pred EEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCc-CCCCCCCceeeeEEE-
Q 011729 200 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNS-TYFVPLKLGSCKRVI- 277 (478)
Q Consensus 200 lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~-~~~~~~~LG~~~~v~- 277 (478)
+|+++++|||.++.+|+. .+++|||+. +|.+|++||++||++++++..++.- +.+++..+|+|+.|.
T Consensus 288 vVLtt~gIddmc~K~~ve------agamAVrR~-----~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvq 356 (545)
T KOG0360|consen 288 VVLTTGGIDDMCLKYFVE------AGAMAVRRC-----KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQ 356 (545)
T ss_pred EEEEcCCccHHHHHHHHH------cchhhhHHH-----HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHH
Confidence 999999999999999997 447899988 6889999999999999998554433 356788999999984
Q ss_pred --EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHH
Q 011729 278 --ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (478)
Q Consensus 278 --i~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a 355 (478)
+++++++++.|.+. ..|.|++||++++.+||++|++|||+|++|..
T Consensus 357 eri~dde~ilikg~ka--------------------------------~~aSiILrgaNd~~~DEmers~hdaL~Vlkrt 404 (545)
T KOG0360|consen 357 ERIGDDELILIKGTKA--------------------------------TSASIILRGANDFMLDEMERSLHDALCVLKRT 404 (545)
T ss_pred HhcccceeEEeccCcc--------------------------------ceeeEEEecCCcccHhhhccchhhHHHHHHHH
Confidence 78999999988532 25899999999999999999999999999999
Q ss_pred HHcC-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-----------C
Q 011729 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-----------D 421 (478)
Q Consensus 356 ~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~-----------~ 421 (478)
++++ +|||||++|..++-+|+.|+.+ .++||.++..|++||..+|++|+-|++.|+.++ .+++.. .
T Consensus 405 Les~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~ 484 (545)
T KOG0360|consen 405 LESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLL 484 (545)
T ss_pred hccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCcccc
Confidence 9998 9999999999999999999876 789999999999999999999999999999999 998762 1
Q ss_pred CCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 422 SSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 422 ~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
..|+|+|+.+| ++.|.++.|+++|..+|...|+.|+++|.++|||
T Consensus 485 ~k~~GldL~ng------------~~~dn~~~g~~ep~~~kvksLk~ateaaitiLri 529 (545)
T KOG0360|consen 485 LKQYGLDLING------------KIRDNKSAGSFEPPIVKVKSLKFATEAAITILRI 529 (545)
T ss_pred chhhCcccccc------------EeecceeeeeeccceeehhhhHHHHHhhhhhcch
Confidence 35899999999 9999999999999999999999999999999997
No 39
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-59 Score=463.06 Aligned_cols=400 Identities=17% Similarity=0.222 Sum_probs=339.9
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
++++|++||++||++-++ + -++..||+..||||||+|+|.++||++|..+++ |+||..|..||+.|.+.++++
T Consensus 59 gnvLl~emQiqhPTa~lI-----a-kaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~ 132 (520)
T KOG0359|consen 59 GNVLLKEMQIQHPTASLI-----A-KVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEF 132 (520)
T ss_pred chhhHHHHhhcCchHHHH-----H-HHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhh
Confidence 579999999999999654 3 577899999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhc-cCCcee---Ee---cCCCccceeEEEeeEEEec
Q 011729 84 LDCQARKITTFEEIAQVGTTAANG------DGEIGELIAKVFEKGW-ENDLIT---IF---DRKALYNELNFVKGMKLEW 150 (478)
Q Consensus 84 L~~~s~~v~~~~~l~~vA~ts~~~------~~~la~li~~a~~~vg-~~~~I~---v~---~g~~~~d~~~lv~G~~~~~ 150 (478)
|+..+.++ +.+.|..||++|++. -+-+.+++++|+..+- .++.|. ++ +......+..+++|+++||
T Consensus 133 L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdh 211 (520)
T KOG0359|consen 133 LEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDH 211 (520)
T ss_pred hhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccC
Confidence 99777776 467899999999874 2357788888888775 333222 22 2222234577999999999
Q ss_pred cccCCccccccccceeeecCceEEEeccccCCH-------------HH-----------HHHHHHHHHhcC---CCEEEE
Q 011729 151 GLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQG---QSLLVV 203 (478)
Q Consensus 151 g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~~-------------~~-----------i~~~le~i~~~~---~~lvIi 203 (478)
|..||.|++ .++|++||++|.+++.. +| +.+.+++|.+-+ +.+|+|
T Consensus 212 g~rHpdmp~-------~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvi 284 (520)
T KOG0359|consen 212 GARHPDMPR-------RVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVI 284 (520)
T ss_pred CCCCccccc-------chhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEe
Confidence 999998854 78999999999865421 11 123344444433 346766
Q ss_pred -ecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 011729 204 -AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (478)
Q Consensus 204 -~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (478)
+++|||..|..|+. .+|+|+|++. |++ ||||.++|||..+++ ++|++|++||+|+.|. ++
T Consensus 285 nqkGidp~sld~~a~------~gIlaLRRAK----RRN-mERL~lacGG~a~ns-----vddLtp~~LG~aglVye~tlG 348 (520)
T KOG0359|consen 285 NQKGIDPTSLDSLAK------SGILALRRAK----RRN-MERLVLACGGEAVNS-----VDDLTPDYLGYAGLVYEYTLG 348 (520)
T ss_pred cccCCCCCcchhhhh------cchHHHHHHh----hhh-HHHHHHhhccceecc-----cccCChhhccccceeEEeecc
Confidence 57999999998886 4478999983 666 999999999999986 9999999999999995 68
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 011729 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (478)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g 359 (478)
+++|||+++|.+|. .|||+++|||++.+.+.++.++|++++++++++++
T Consensus 349 EEkfTFIE~~~~p~-------------------------------S~TiLikgpnkht~tQikdairdglrav~ntl~d~ 397 (520)
T KOG0359|consen 349 EEKFTFIEKCNNPS-------------------------------SVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDK 397 (520)
T ss_pred ceeeEeeecCCCCc-------------------------------ceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhc
Confidence 99999999999985 49999999999999999999999999999999998
Q ss_pred -CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCC-CCeeEeCCCCCcc
Q 011729 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDS-SDLGYNPARGRWE 435 (478)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~~~-~~~G~d~~~~~~~ 435 (478)
++||+|+.|..++.+|+....+ +++.++|+++|++||..+|++|++|+|+|+.+. .+|..+.. ...|+|..+|
T Consensus 398 ~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g--- 474 (520)
T KOG0359|consen 398 CGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRG--- 474 (520)
T ss_pred ccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccC---
Confidence 9999999999999999977665 899999999999999999999999999999998 87765422 3469999999
Q ss_pred cccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhc
Q 011729 436 CFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 477 (478)
Q Consensus 436 ~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~ 477 (478)
+..|....||||.+.||++.|.+++-+|+.+|.
T Consensus 475 ---------~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLl 507 (520)
T KOG0359|consen 475 ---------EECDPSRKGIYDNYSVKKQLLRSEAVIATNLLL 507 (520)
T ss_pred ---------CccchhhccccchHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999999999999999999998874
No 40
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-56 Score=446.79 Aligned_cols=400 Identities=14% Similarity=0.133 Sum_probs=345.0
Q ss_pred HHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 011729 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (478)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~L 84 (478)
+.||.+|++.||++|-+ ++ +|.+||+|||||||||++||+|+|..+..+++ |+||+.|++.|.+|++.++..|
T Consensus 62 ~ailrei~Vahpaaksm--ie----l~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~ 135 (527)
T KOG0364|consen 62 NAILREIDVAHPAAKSM--IE----LSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRAL 135 (527)
T ss_pred HHHHHHHhhcCcchhhH--hh----hhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHH
Confidence 56899999999999998 64 45599999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC-Cc-eeE--------ecCCCccceeEEEeeE
Q 011729 85 DCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN-DL-ITI--------FDRKALYNELNFVKGM 146 (478)
Q Consensus 85 ~~~s~~v~--~~~~l~~vA~ts~~------~~~~la~li~~a~~~vg~~-~~-I~v--------~~g~~~~d~~~lv~G~ 146 (478)
++++.|++ +...+.++...+.. -++.++.+..+|+++++.+ |. |.+ .+|+.++ ++.+++|+
T Consensus 136 ~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~-~s~vl~Gv 214 (527)
T KOG0364|consen 136 DKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLE-DSCVLKGV 214 (527)
T ss_pred HhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccc-ccceecce
Confidence 98887765 55567666554432 2457889999999999865 32 322 2677776 57899999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccCC------------------------HHHHHHHHHHHHhcCCCEEE
Q 011729 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN------------------------SNVIRQASLPCMMQGQSLLV 202 (478)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~i~~------------------------~~~i~~~le~i~~~~~~lvI 202 (478)
.+.+...||.|. -.++||+|+++|.++.. .+++..+.+.|..-.-.||+
T Consensus 215 ~~nkdv~Hpkmr-------r~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVi 287 (527)
T KOG0364|consen 215 MINKDVTHPKMR-------RAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVI 287 (527)
T ss_pred eeccccCcHHHH-------HHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEE
Confidence 999998888653 46899999999987532 12455667777777767888
Q ss_pred EecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCce-eeeEEEE---
Q 011729 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLG-SCKRVIA--- 278 (478)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG-~~~~v~i--- 278 (478)
+.+++++.+.++|..++ +.++|+. ||.+..++|++||++++++ ++|+.+.+.| .|+.+++
T Consensus 288 tekG~sdla~hyl~k~~------iT~~rr~-----rKtDn~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~ 351 (527)
T KOG0364|consen 288 TEKGVSDLAQHYLLKAN------ITAIRRL-----RKTDNNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKI 351 (527)
T ss_pred eccchhHHHHHHHHhcC------chhhhhh-----hccccchhhhhcCceeccC-----hhhCchhccCcccceeeeecc
Confidence 88999999999998766 4557755 8999999999999999996 8999999999 6888874
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHc
Q 011729 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (478)
Q Consensus 279 ~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~ 358 (478)
+++.|+||..|.+|++ |||++||+|..+++|.+|.+-||+.+.|+.+-+
T Consensus 352 gdeyf~f~~~Ck~pka-------------------------------Ctillrg~skdil~e~ernlqda~~varn~ii~ 400 (527)
T KOG0364|consen 352 GDEYFTFFTDCKEPKA-------------------------------CTILLRGPSKDILNEVERNLQDAMGVARNVIIN 400 (527)
T ss_pred CchhhhhhhhcCCCcc-------------------------------eEEEeccCchhHHHHHHHHhhhHHHHHHHhccC
Confidence 6777999999999964 999999999999999999999999999999887
Q ss_pred C-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCC
Q 011729 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARG 432 (478)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~ 432 (478)
+ +|||||++|+.+|..|.+.+.. ++-++.-+.+++.||+.+|++|++|+|.|+... ..++. .+...+|+|..++
T Consensus 401 PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg 480 (527)
T KOG0364|consen 401 PKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETG 480 (527)
T ss_pred CcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCcee
Confidence 7 9999999999999999886655 888999999999999999999999999999988 77765 2445679999988
Q ss_pred CcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 433 RWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 433 ~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
.++||.+.|+|+|+.+|.+..++|.+.|+++|||
T Consensus 481 ------------~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRI 514 (527)
T KOG0364|consen 481 ------------VIVDMVELGIWEPEAVKLQTGKTAVESACLLLRI 514 (527)
T ss_pred ------------eEeeeeeccccchhhhhhhhhhHHHHHHHHHHhh
Confidence 9999999999999999999999999999999987
No 41
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-55 Score=442.75 Aligned_cols=401 Identities=16% Similarity=0.166 Sum_probs=332.0
Q ss_pred HHHHhhhccccCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 011729 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (478)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~ 83 (478)
|.+||++++++||++|++ | .++++|++++||||+.+|+||++||++|.++|. |++|.+|++||+.|.+.+++.
T Consensus 68 aatIlrelev~HPaakll--v----~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~ 141 (537)
T KOG0362|consen 68 AATILRELEVEHPAAKLL--V----EATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEI 141 (537)
T ss_pred hHHHHHHhhccCcHHHHH--H----HHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999 4 778899999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc-cCCHHHHHHHHHHhc-----CCChhHHHHHHHHHHhhccCC-----ceeEe--cCCCccceeEEEeeEEEec
Q 011729 84 LDCQARK-ITTFEEIAQVGTTAA-----NGDGEIGELIAKVFEKGWEND-----LITIF--DRKALYNELNFVKGMKLEW 150 (478)
Q Consensus 84 L~~~s~~-v~~~~~l~~vA~ts~-----~~~~~la~li~~a~~~vg~~~-----~I~v~--~g~~~~d~~~lv~G~~~~~ 150 (478)
|+++... +.+.++...+++++. .+++++.+++++|+.++.+.+ +|+|- .|++..+ |.++.||+|.+
T Consensus 142 l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~-S~Vv~GmVfkr 220 (537)
T KOG0362|consen 142 LPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLED-SCVVCGMVFKR 220 (537)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCccc-ceeeEEEEecc
Confidence 9997642 222222223333333 237789999999999998763 35543 6888864 77999999998
Q ss_pred cccCCccccccccceeeecCceEEEeccc-------------cCCHHHHH-----------HHHHHHHhcCCCEEEEecC
Q 011729 151 GLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIR-----------QASLPCMMQGQSLLVVAED 206 (478)
Q Consensus 151 g~~~~~~~~~~~~~~~~l~~~~Ili~d~~-------------i~~~~~i~-----------~~le~i~~~~~~lvIi~~~ 206 (478)
..... ...-...+|.++.++ |++++++. ..++.+..+|.++++....
T Consensus 221 ~~eG~---------v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~ 291 (537)
T KOG0362|consen 221 DPEGE---------VKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGK 291 (537)
T ss_pred ccCCc---------ccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCc
Confidence 65422 112223444444433 55665443 4567788899999999999
Q ss_pred cchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE---EEecceE
Q 011729 207 VENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNV 283 (478)
Q Consensus 207 i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v---~i~~~~~ 283 (478)
+++.+|+ +.|+ ++|+++|.+ .|.+|.+||+..||++.++ +..+.++.+|+|++| |++++.+
T Consensus 292 V~em~Lh--flnk----y~ImVlqi~-----Sk~eLrrlcrtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v 355 (537)
T KOG0362|consen 292 VDEMTLH--FLNK----YKIMVLQIN-----SKFDLRRLCRTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLV 355 (537)
T ss_pred cchhhhh--hhcc----ccEEEEEec-----cHhhHHHHHHHcCCccchh-----ccCCCCccccccceeeeeecCCceE
Confidence 9999987 4444 889999999 5889999999999999986 888888899999988 4677887
Q ss_pred EEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcC
Q 011729 284 VIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVP 362 (478)
Q Consensus 284 ~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g-vVp 362 (478)
++|..... .+.++||++||+|+..+|+.||.++|++++.+..++++ ++|
T Consensus 356 ~vF~~e~~------------------------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlp 405 (537)
T KOG0362|consen 356 VVFRWEST------------------------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLP 405 (537)
T ss_pred EEEeeccC------------------------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCcccc
Confidence 77764211 13578999999999999999999999999999999987 999
Q ss_pred CchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc--CCCCeeEeCCCCCccccc
Q 011729 363 GSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ--DSSDLGYNPARGRWECFH 438 (478)
Q Consensus 363 GGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~--~~~~~G~d~~~~~~~~~~ 438 (478)
|+|++|+++++.|.++... +|.+|++++.|++||+.+|++||+|||++..++ ++|... +..+.|+|+...
T Consensus 406 GagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e------ 479 (537)
T KOG0362|consen 406 GAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAE------ 479 (537)
T ss_pred CCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeecc------
Confidence 9999999999999999875 999999999999999999999999999999999 988663 345678888654
Q ss_pred ccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 439 FFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 439 ~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
+ ..-|+.+.||||-+.+|.++|+.|+++|.++|++
T Consensus 480 ----~-~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~v 514 (537)
T KOG0362|consen 480 ----G-GTIDVREEGIWDTLAVKAQAIKLATEAALTVLTV 514 (537)
T ss_pred ----c-cccChhhhchHHHHHHHHHHHHHHHhhhheeeeh
Confidence 0 3789999999999999999999999999999975
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-53 Score=409.27 Aligned_cols=306 Identities=18% Similarity=0.185 Sum_probs=279.2
Q ss_pred cCcccccccchhhhhhhhhhccccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHhccccccCC
Q 011729 15 INTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT 93 (478)
Q Consensus 15 ~~p~~~~~~~v~~s~~~s~~qd~evGDGTTTvvvLa~~Ll~~a~~li~-G~~P~~I~~G~~~A~~~~~~~L~~~s~~v~~ 93 (478)
.|+++|++ + .+|.+||.++|||||.+++|++++++++.+++. |+||..|..||+.|+..++++|.+++.+++
T Consensus 71 d~~IakLm--v----~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e- 143 (400)
T KOG0357|consen 71 VHQIAKLI--V----ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE- 143 (400)
T ss_pred chHHHHHH--H----HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-
Confidence 46777777 4 566799999999999999999999999999999 999999999999999999999999887764
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeEecCCCccceeEEEeeEEEeccccCCccccccccceeeecCceE
Q 011729 94 FEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALV 173 (478)
Q Consensus 94 ~~~l~~vA~ts~~~~~~la~li~~a~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~~~~~l~~~~I 173 (478)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCeE
Q 011729 174 LIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQV 253 (478)
Q Consensus 174 li~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~v 253 (478)
+..+++.++++|.+|+||+|+||+++.+.|..|++ -|||++|- .++|-||++|||++
T Consensus 144 ------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~l------pavrwVGG-----pEiEliAiaT~grI 200 (400)
T KOG0357|consen 144 ------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNL------PAVRWVGG-----PEIELIAIATGGRI 200 (400)
T ss_pred ------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCC------CceeecCC-----cceEEEEeecCCee
Confidence 44667889999999999999999999999998885 46999862 24999999999999
Q ss_pred eeCCCCCCcCCCCCCCceeeeEEE-E----ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEE
Q 011729 254 LTGGSGMNSTYFVPLKLGSCKRVI-A----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVL 328 (478)
Q Consensus 254 ~s~~~~~~~~~~~~~~LG~~~~v~-i----~~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI 328 (478)
+.+ ++++++++||+|+.|. + ++|++.+++.|++.+ ..||
T Consensus 201 Vpr-----F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nsk-------------------------------aVTi 244 (400)
T KOG0357|consen 201 VPR-----FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSK-------------------------------AVTI 244 (400)
T ss_pred ecc-----HhhhCHhhccccceEEEEecccccceEEEEEecCCCc-------------------------------eEEE
Confidence 986 9999999999999985 2 478999999998875 4799
Q ss_pred EeccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHh
Q 011729 329 KVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASN 406 (478)
Q Consensus 329 ~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~N 406 (478)
.|||.+..+++|.+|++|||||++|+.+++. +|+|||++|+.||-.+.+-+.. ++.+||++++|++||+++|..||+|
T Consensus 245 fvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaen 324 (400)
T KOG0357|consen 245 FVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAEN 324 (400)
T ss_pred EEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhc
Confidence 9999999999999999999999999999986 9999999999999999887765 8999999999999999999999999
Q ss_pred cCCChHHH-HHHHh----cCCCCeeEeCCCCCcccccccCCCCCcccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 011729 407 AGVDGSVI-DKLLE----QDSSDLGYNPARGRWECFHFFSEPGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 478 (478)
Q Consensus 407 aG~d~~~v-~~l~~----~~~~~~G~d~~~~~~~~~~~~~~~~~~~dm~~~gI~dp~~v~~~al~~A~~~A~~iL~i 478 (478)
+|++|.+. +++++ ...+++|+|+.-. .-.||.+.+++||+..|++.+..||.++.|||+|
T Consensus 325 sgl~pi~~ls~~ka~q~~~~~~~lGidcl~~------------G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKi 389 (400)
T KOG0357|consen 325 SGLDPIETLSDVKARQVKEMNPALGIDCLHK------------GTNDMKEQHVIETLIGKKQQISLATQMVRMILKI 389 (400)
T ss_pred cCCCchhhhhHhHHHHHHhcCcccCcchhcc------------CchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999 88876 2568899999876 7889999999999999999999999999999987
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.95 E-value=3.3e-27 Score=225.73 Aligned_cols=192 Identities=26% Similarity=0.342 Sum_probs=164.5
Q ss_pred HHHHHHHHHhcC-----CChhHHHHHHHHHHhhcc------CCceeEe--cCCCccceeEEEeeEEEeccccCCcccccc
Q 011729 95 EEIAQVGTTAAN-----GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHK 161 (478)
Q Consensus 95 ~~l~~vA~ts~~-----~~~~la~li~~a~~~vg~------~~~I~v~--~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~ 161 (478)
++|.++|+++.+ .++.+++++++|+..+++ .+.|.++ +|++.. ++++++|++|+++|.+|+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~-ds~li~Gv~~~~~~~~~~m~--- 77 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLE-DSELVVGVVFDKGYASPYMP--- 77 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChh-hceeEeeEEEeccccCCCCC---
Confidence 468899999888 678899999999999987 3456665 677664 68899999999999999883
Q ss_pred ccceeeecCceEEEeccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhH
Q 011729 162 NKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 241 (478)
Q Consensus 162 ~~~~~~l~~~~Ili~d~~i~~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~ 241 (478)
..++||+|++++.+|+. ++++.++|++.++++|.. .+|+++++. ++.+
T Consensus 78 ----~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~------~~I~~v~~~-----~~~~ 125 (209)
T cd03333 78 ----KRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAK------AGIMAVRRV-----KKED 125 (209)
T ss_pred ----eEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHH------CCCEEEEeC-----CHHH
Confidence 47899999999999886 777777899999998886 447999987 4667
Q ss_pred HHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHH
Q 011729 242 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRL 318 (478)
Q Consensus 242 le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~---~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl 318 (478)
|+|||++|||+++++ ++++++++||+|++|++. +++++++.++..+
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 999999999999986 788889999999999864 4458888876543
Q ss_pred hhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHc
Q 011729 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (478)
Q Consensus 319 ~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~ 358 (478)
+.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 175 -----~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 -----KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -----CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 56999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.93 E-value=8e-25 Score=216.06 Aligned_cols=198 Identities=11% Similarity=0.147 Sum_probs=163.0
Q ss_pred ChhHHHHHHHHHHhhccC---C-------ceeEe--cCCCccceeEEEeeEEEeccccCCccccccccceeeecCceEEE
Q 011729 108 DGEIGELIAKVFEKGWEN---D-------LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLI 175 (478)
Q Consensus 108 ~~~la~li~~a~~~vg~~---~-------~I~v~--~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili 175 (478)
.+.|++++++|+..+.++ + .|+++ .|+++. ++++++|+++++++.++.|+ ..++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~-dS~li~Gvvi~k~~~~~~m~-------~~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPS-DSEVVDGVVFTKNVAHKRMP-------SKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHH-HcEEEeeEEEeCCCCCccCC-------cccCCCcEEE
Confidence 467999999999988532 1 25554 688875 68999999999998887664 4789999999
Q ss_pred eccccCCH-----------------HHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhh
Q 011729 176 YDTKISNS-----------------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDR 238 (478)
Q Consensus 176 ~d~~i~~~-----------------~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~r 238 (478)
++++++.. +.+..++++++..|.++|++.++|++.++++|..+ +|++++++ +
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~~v-----~ 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVLNV-----K 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEEec-----C
Confidence 99876432 12457788899999999999999999999988874 47899998 4
Q ss_pred hhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---ec-----ceEEEEcCCCChhhHHHHHHHHHHHhhhcc
Q 011729 239 KAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TM-----DNVVIIGGSGELVDIQERCEQLRSTIKLST 310 (478)
Q Consensus 239 k~~le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i---~~-----~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~ 310 (478)
+++|++||++|||+++++. .+.++++.||+|+.|++ ++ +++++|++|..+
T Consensus 161 ~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~------------------ 218 (261)
T cd03334 161 PSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE------------------ 218 (261)
T ss_pred HHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC------------------
Confidence 6679999999999999861 24788889999999975 33 579999998654
Q ss_pred hHHHHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 011729 311 SDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (478)
Q Consensus 311 s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g 359 (478)
+.+||+|||+|++.++|.||+++||+++++++..++
T Consensus 219 -------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 369999999999999999999999999999997764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.68 E-value=1.8e-07 Score=107.22 Aligned_cols=204 Identities=12% Similarity=0.164 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhhccC----------CceeEe--cCCCccceeEEEeeEEEeccccCCccccccccceeeecCceEEEecc
Q 011729 111 IGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT 178 (478)
Q Consensus 111 la~li~~a~~~vg~~----------~~I~v~--~g~~~~d~~~lv~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~ 178 (478)
+..+..+|...+.++ +.+.++ .+|+. .++++++|+++.+-..+-.| ..++++|+|++..+
T Consensus 337 i~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~-~dS~vi~Gvv~sKn~~~k~M-------~~~~e~prilll~g 408 (1598)
T KOG0230|consen 337 ITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSR-VDSEVIKGVVCSKNVAHKRM-------ATKYENPRILLLGG 408 (1598)
T ss_pred HHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCc-ccceeeeEEEeecchhhhhh-------hhhccCCceEEEec
Confidence 455555666555432 124444 56664 57999999999887655444 45788899999876
Q ss_pred ccC---------CHH--------HHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhH
Q 011729 179 KIS---------NSN--------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 241 (478)
Q Consensus 179 ~i~---------~~~--------~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~ 241 (478)
.+. +.+ .+...+..|...+-+++++.+++++.|..+|.. +++.-++-|| ...
T Consensus 409 ~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~---k~I~lvlnvK--------~s~ 477 (1598)
T KOG0230|consen 409 PLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLD---KGISLVLNVK--------RSL 477 (1598)
T ss_pred chhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhc---cCeEEEEecc--------HHH
Confidence 432 222 233344455445556889999999999987774 3433344454 336
Q ss_pred HHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe--------cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHH
Q 011729 242 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT--------MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDK 313 (478)
Q Consensus 242 le~la~~tG~~v~s~~~~~~~~~~~~~~LG~~~~v~i~--------~~~~~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~ 313 (478)
|+||++.||+.|+.+ ++.++...||+|..+++. .....||.||..+.
T Consensus 478 leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l-------------------- 532 (1598)
T KOG0230|consen 478 LERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL-------------------- 532 (1598)
T ss_pred HHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC--------------------
Confidence 999999999999976 777888899999998753 22367888987653
Q ss_pred HHHHHhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHH-HHcCCcCCchHHHH
Q 011729 314 LKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA-KEEGIVPGSGVALL 369 (478)
Q Consensus 314 l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a-~~~gvVpGGGa~e~ 369 (478)
.|||++||.+..++.+.++-+.-.+-++-.. ++.-|+.--|+...
T Consensus 533 -----------G~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 533 -----------GCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred -----------CceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 3899999999999999999999888888644 66667766666543
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00049 Score=74.62 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCC-EEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHH-HHHHHHhCCeEeeCCCCCCcC
Q 011729 186 IRQASLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM-EDLAILTGGQVLTGGSGMNST 263 (478)
Q Consensus 186 i~~~le~i~~~~~~-lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~l-e~la~~tG~~v~s~~~~~~~~ 263 (478)
+..+++.+.+.|.+ +++++++|++.+.++|..+. |++++++. ++++ ++|+.+|||++++. ++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~------Ilt~~~v~-----~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIA------ILTGRRVK-----KEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhc------ceecceec-----chhhHHHHHHccCceEEee-----cc
Confidence 44666778889999 88889999999999888744 68898884 5568 79999999999996 89
Q ss_pred CCCCCCcee--eeEEEE---ecceEEEEcCCC
Q 011729 264 YFVPLKLGS--CKRVIA---TMDNVVIIGGSG 290 (478)
Q Consensus 264 ~~~~~~LG~--~~~v~i---~~~~~~~~~g~~ 290 (478)
+.++..+|. |+.|+. ++++++++.++.
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~ 354 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERK 354 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhh
Confidence 999999999 999974 344555555543
No 47
>smart00574 POX domain associated with HOX domains.
Probab=43.03 E-value=58 Score=29.18 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHh
Q 011729 336 AEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDK 377 (478)
Q Consensus 336 ~~l~E~~r~l~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~ 377 (478)
..++|++++++--..-++..+.+- .|+|.|++-.+.+-+|+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a 126 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKT 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 457788888877777777766654 789999998888777754
No 48
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=39.42 E-value=69 Score=35.12 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=27.5
Q ss_pred HHHHHhhccCCceeEecCCCccc-eeEEEeeEEEeccccCCcccc
Q 011729 116 AKVFEKGWENDLITIFDRKALYN-ELNFVKGMKLEWGLKSPYFFT 159 (478)
Q Consensus 116 ~~a~~~vg~~~~I~v~~g~~~~d-~~~lv~G~~~~~g~~~~~~~~ 159 (478)
.+++..++.++.+.+..+....+ .+.-+.|..++.+|+.|+|+.
T Consensus 178 ~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~ 222 (533)
T PTZ00212 178 KDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFIL 222 (533)
T ss_pred HHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEE
Confidence 45566666666666655444432 344555888888888888754
No 49
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=38.29 E-value=1.1e+02 Score=24.90 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCe
Q 011729 188 QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (478)
Q Consensus 188 ~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~ 252 (478)
+-++.+.+....++++++|+++.....+..--.+ .+|-.+..++ +++|-++||-.
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lcee--k~Ip~v~V~s--------~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQ--KNIPVSFFKS--------KHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEECC--------HHHHHHHhCCC
Confidence 3355555555779999999999877655431111 1222333332 67888888754
No 50
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=37.03 E-value=13 Score=40.51 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=49.0
Q ss_pred cCCCEEEEecCcch-----hhhhhHHhhhcCCC----ccEEEEEecccchhhhhHHHHHHHHhCCeEeeC
Q 011729 196 QGQSLLVVAEDVEN-----EVLGDIATDFTCTT----EKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 256 (478)
Q Consensus 196 ~~~~lvIi~~~i~~-----~al~~l~~n~~~~~----~~v~avk~~~~g~~rk~~le~la~~tG~~v~s~ 256 (478)
...|+.|..+++++ +++..++.|+.+++ .++++++.+ +++.+...|++..++++.++...
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 34578888999988 78888888887654 488999988 99999999999999988876653
No 51
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=32.52 E-value=95 Score=33.94 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=26.6
Q ss_pred HHHHHhhccCCceeEecCCCccceeEEEe--eEEEeccccCCcccc
Q 011729 116 AKVFEKGWENDLITIFDRKALYNELNFVK--GMKLEWGLKSPYFFT 159 (478)
Q Consensus 116 ~~a~~~vg~~~~I~v~~g~~~~d~~~lv~--G~~~~~g~~~~~~~~ 159 (478)
.+++..++.++.+.++.+... +.+++++ |..++.+|+.|+|+.
T Consensus 167 ~~~~s~l~~~av~~i~~~~~~-~~i~i~k~~G~s~~~s~l~~G~v~ 211 (519)
T TIGR02341 167 KDHFAQLAVDAVLRLKGSGNL-DAIQIIKKLGGSLNDSYLDEGFLL 211 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCh-hheEEEEccCCCcccceEEeeEEE
Confidence 445555555665566554444 3466664 888888888877754
No 52
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=30.28 E-value=95 Score=27.87 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHhh
Q 011729 336 AEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL 378 (478)
Q Consensus 336 ~~l~E~~r~l~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~ 378 (478)
..|+|++++++--..-++..+.+- -|.|.|++-.+.+-+|+..
T Consensus 84 ~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqam 127 (140)
T PF07526_consen 84 SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAM 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 356777777777666666665554 7889999988888777543
No 53
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=29.27 E-value=25 Score=37.66 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHhhcC
Q 011729 342 KLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT 380 (478)
Q Consensus 342 ~r~l~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~ 380 (478)
+|.+.+|+..+|++.+.=+|.|||+-+-.+...|..|+.
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E 254 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAE 254 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHH
Confidence 355889999999997766999999999888888877753
No 54
>PLN02512 acetylglutamate kinase
Probab=23.04 E-value=1.6e+02 Score=29.88 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=27.5
Q ss_pred HhhhcCCeEEEEeccCchhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchH
Q 011729 318 LAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGV 366 (478)
Q Consensus 318 l~~l~g~~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~~g-vVpGGGa 366 (478)
+.++.|++..|++||+.-..-+ ...++.+.+..++..=..- +|.|||.
T Consensus 42 i~~~~~~tiVIKlGGs~i~d~~-~~~~~~~di~~l~~~g~~iVlVHGgG~ 90 (309)
T PLN02512 42 IQRFRGKTVVVKYGGAAMKDPE-LKAGVIRDLVLLSCVGLRPVLVHGGGP 90 (309)
T ss_pred HHHHCCCeEEEEECCeeccChh-HHHHHHHHHHHHHHCCCCEEEEECCcH
Confidence 4567889999999997743222 2233333333332110112 6999998
No 55
>PLN02282 phosphoglycerate kinase
Probab=22.52 E-value=9.4e+02 Score=25.51 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEeccc--chhhhhHHHHHHHHh--CCeEeeCC
Q 011729 182 NSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL--AEDRKAIMEDLAILT--GGQVLTGG 257 (478)
Q Consensus 182 ~~~~i~~~le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~--g~~rk~~le~la~~t--G~~v~s~~ 257 (478)
+.+...+.|+... ++++.++.+-+++++... .+.++. -.|+.+...-| ++. +++ +.+++.. -+.++-+
T Consensus 76 SL~~va~~Ls~lL--~~~V~fv~d~~g~~~~~~--i~~l~~-G~ilLLEN~RF~~~E~-~~~-~~~a~~LA~l~DvyVN- 147 (401)
T PLN02282 76 SLKPLVPRLSELL--GVEVVMANDCIGEEVEKL--VAELPE-GGVLLLENVRFYKEEE-KND-PEFAKKLASLADVYVN- 147 (401)
T ss_pred CHHHHHHHHHHHH--CCCeEECCCCCCHHHHHH--HhcCCC-CCEEEEeccccCcccc-cCH-HHHHHHHHHhCcEeee-
Confidence 4456666676654 677777666666665542 223332 34666766655 432 221 3444433 1334422
Q ss_pred CCCCcCCCCCCCceeeeEEEEecceE-EEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCchh
Q 011729 258 SGMNSTYFVPLKLGSCKRVIATMDNV-VIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKA 336 (478)
Q Consensus 258 ~~~~~~~~~~~~LG~~~~v~i~~~~~-~~~~g~~~~~~i~~~~~~l~~~i~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~ 336 (478)
+-+|.+.+-..+--.+ .++...---..++.-++.|.+.++... +-.+.++||+
T Consensus 148 ----------DAFg~aHR~haS~~gi~~~l~~~~aG~lmekEl~~L~~~l~~p~-------------rP~vaIlGGa--- 201 (401)
T PLN02282 148 ----------DAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVANPK-------------KPFAAIVGGS--- 201 (401)
T ss_pred ----------chhhhhhhcccchhhhhhhcCccccchHHHHHHHHHHHHhcCCC-------------CCeEEEEcCC---
Confidence 3466666654332211 122101111345555666666554321 2367888984
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--cCCcCCchHHHHHH
Q 011729 337 EVREKKLKITNALHAVQAAKE--EGIVPGSGVALLYA 371 (478)
Q Consensus 337 ~l~E~~r~l~DAl~a~r~a~~--~gvVpGGGa~e~~~ 371 (478)
.+.|-+.++++.++ +.++.|||.+..-+
T Consensus 202 -------KvsdKi~vi~~Ll~kvD~lliGG~ma~tFl 231 (401)
T PLN02282 202 -------KVSTKIGVIESLLEKVDILLLGGGMIFTFY 231 (401)
T ss_pred -------cHHhHHHHHHHHHHhhhhheeccHHHHHHH
Confidence 36677777877766 67999999988655
No 56
>PRK06683 hypothetical protein; Provisional
Probab=22.14 E-value=3.1e+02 Score=22.05 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=31.3
Q ss_pred HHHHHhcCCCEEEEecCcchhhhhhHHhhhcCCCccEEEEEecccchhhhhHHHHHHHHhCCe
Q 011729 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (478)
Q Consensus 190 le~i~~~~~~lvIi~~~i~~~al~~l~~n~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~ 252 (478)
++.+.+....+||++.|.++.....+..--.. .+|-.+..+ ..++|..+||-.
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~--~~Vpv~~~~--------t~~eLG~A~G~~ 72 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQ--HNIPITKVE--------SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHh--cCCCEEEEC--------CHHHHHHHhCCc
Confidence 45554555679999999999876654311111 222233333 257888888854
No 57
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=21.77 E-value=3.4e+02 Score=21.93 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=30.9
Q ss_pred HHHHHhcCCCEEEEecCcchhhhhhHHhh-hcCCCccEEEEEecccchhhhhHHHHHHHHhCCe
Q 011729 190 SLPCMMQGQSLLVVAEDVENEVLGDIATD-FTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (478)
Q Consensus 190 le~i~~~~~~lvIi~~~i~~~al~~l~~n-~~~~~~~v~avk~~~~g~~rk~~le~la~~tG~~ 252 (478)
++.+.+....|||++.|.++.....+..- +..+ .++ +... ..++|..++|-.
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~-Vpv--~~~~--------t~~eLG~A~G~~ 69 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKS-IKI--VYID--------TMKELGVMCGID 69 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCC-CCE--EEeC--------CHHHHHHHHCCc
Confidence 45555555689999999998776655421 1111 222 2222 257888888854
No 58
>PLN03034 phosphoglycerate kinase; Provisional
Probab=20.07 E-value=9.9e+02 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=28.8
Q ss_pred eEEEEeccCchhHHHHHHHHHHHHHHHHHHHHH--cCCcCCchHHHHHH
Q 011729 325 YAVLKVCGHGKAEVREKKLKITNALHAVQAAKE--EGIVPGSGVALLYA 371 (478)
Q Consensus 325 ~~tI~v~G~t~~~l~E~~r~l~DAl~a~r~a~~--~gvVpGGGa~e~~~ 371 (478)
-.+.+|||+ .+.|-+.++++.++ +.++.|||.+..-+
T Consensus 268 P~vaIlGGa----------KVsdKI~vi~~Ll~kvD~lliGG~ma~tFl 306 (481)
T PLN03034 268 PFAAIVGGS----------KVSSKIGVIESLLEKCDILLLGGGMIFTFY 306 (481)
T ss_pred ceEEEEcCc----------cHHhHHHHHHHHHHhcCEEEECcHHHHHHH
Confidence 367888884 35778888888876 67999999988665
Done!