BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011730
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/392 (54%), Positives = 287/392 (73%), Gaps = 11/392 (2%)
Query: 86 EVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIR 145
+++E A+ PE DW+ +RR IH+NPEL ++E ETS+L+R+EL+ + I Y+YP+A TG+
Sbjct: 16 KLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAITGVI 75
Query: 146 AWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSR 205
++GTG PPFVALRADMDALPIQE VEWE+KSK+AGKMHACGHD HV ML+GAAKIL
Sbjct: 76 GYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKILHEH 135
Query: 206 EH--------LLKPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 257
H + +PAEE +GAK+M +GAL++VEAIF +H+S P G SR G LA
Sbjct: 136 RHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLA 195
Query: 258 GCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG 317
G G F AVI+GK G AA P ++DPV+AAS+ V+SLQ LVSRE +PLDS+VV+V+ NGG
Sbjct: 196 GAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVNGG 255
Query: 318 DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPP 377
+ ++IPD++ IGGTLRAF T F QL QR++EVI +QA V RC+A+V+ G PP
Sbjct: 256 NAFNVIPDSITIGGTLRAF--TGFTQLQQRVKEVITKQAAVHRCNASVNLTPNGREPMPP 313
Query: 378 TVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSI 437
TVN++D+Y+ KKV DLLG + P+MG+EDFS+++E +P F +G+++ET G
Sbjct: 314 TVNNKDLYKQFKKVVRDLLGQEAFVEAAPVMGSEDFSYFAETIPGHFSLLGMQDETNGYA 373
Query: 438 HTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 469
+ HSP + I+EDVLP GAA+HA++A ++L E
Sbjct: 374 -SSHSPLYRINEDVLPYGAAIHASMAVQYLKE 404
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 188/376 (50%), Gaps = 25/376 (6%)
Query: 100 LKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWV-GTGGPPFVA 157
L + RR +H++PEL+FQE ET++ +R L+ +I P KTG+ A + G P +A
Sbjct: 34 LINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIA 93
Query: 158 LRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLK------- 210
+RAD+DALPIQE + SKV G HACGHD H A +IG A +L R LK
Sbjct: 94 IRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIF 153
Query: 211 -PAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGK 269
PAEE GA++++ G L V AIF H + P G IG + GPL A F VI GK
Sbjct: 154 QPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPVGTIGVKEGPLXASVDRFEIVIKGK 213
Query: 270 KGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVI 329
G A+ P+ S+DP+ AA + LQ +VSR + L + VVS+T G ++IPD
Sbjct: 214 GGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEX 273
Query: 330 GGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVK 389
GT+R F + + + V A + A +F Y P+V ++ + +
Sbjct: 274 EGTVRTFQKEARQAVPEHXRRVAEGIAAGYGAQAEFKWFP-----YLPSVQNDGTFLNAA 328
Query: 390 KVAIDLLGPMNYRVVPPMM--GAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMI 447
A LG Y+ V G EDF+ Y E +P F + G H P F +
Sbjct: 329 SEAAARLG---YQTVHAEQSPGGEDFALYQEKIPGFFVWXGTN-----GTEEWHHPAFTL 380
Query: 448 DEDVLPVGAAVHATIA 463
DE+ L V + A +A
Sbjct: 381 DEEALTVASQYFAELA 396
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 193/376 (51%), Gaps = 15/376 (3%)
Query: 103 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGP-PFVALRAD 161
+RR +HQ+PEL+F E ET++ + ++ + + GI+ + +G P +A+RAD
Sbjct: 19 IRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGIKVTIDSGKPGKTLAIRAD 78
Query: 162 MDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREH--------LLKPAE 213
DALPI E + S+ G MHACGHDAH A ++ A+ L + + +PAE
Sbjct: 79 FDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLAEMKDSFTGKVVVIHQPAE 138
Query: 214 EAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGG 272
E GAK M+ +G L+ V+ + VHV TG + RPG + G FF + GK G
Sbjct: 139 EVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRPGYVQTGRAFFKLKVQGKGGH 198
Query: 273 AANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGT 332
++PH + D ++A S V +LQ +VSR +P ++ VV++ F+G ++I D V I G
Sbjct: 199 GSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTIGSFDGKGQFNVIKDVVEIEGD 258
Query: 333 LRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVA 392
+R ++ + + + I+ + ++ + T+++ D YP ND + E+V K
Sbjct: 259 VRGLTDATKATIEKEIKRLSKGLEDMYGVTCTLEYNDD----YPALYNDPEFTEYVAKTL 314
Query: 393 IDLLGPMNYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVL 452
+ + P +EDF++Y++ P+AF Y G E G I+ H P F I E L
Sbjct: 315 KEANLDFGVEMCEPQPPSEDFAYYAKERPSAFIYTGAAVEN-GEIYPHHHPKFNISEKSL 373
Query: 453 PVGAAVHATIAERFLN 468
+ A T+ +L
Sbjct: 374 LISAEAVGTVVLDYLK 389
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 143 GIRAWVGTGGP-PFVALRADMDALPIQEAVEWEYK-------SKVAGKMHACGHDAHVAM 194
G+ A + TG P P +A R D DAL + E + ++ S AG HACGHD H A+
Sbjct: 98 GVVATLDTGRPGPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTAI 157
Query: 195 LIGAAKILKSR--------EHLLKPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTG 246
+G A +LK + + +PAEE GA+ +A G ++DV+ A+H+ P G
Sbjct: 158 GLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPAG 217
Query: 247 VI 248
+
Sbjct: 218 TV 219
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 87/381 (22%), Positives = 142/381 (37%), Gaps = 63/381 (16%)
Query: 91 ARRPETVDWLKS-------VRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA--K 141
+ + +D++++ + IH+ PEL +E SR L L + + +A
Sbjct: 2 GEKQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHA 61
Query: 142 TGIRAWVGTG-GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD----AHVAMLI 196
TG A +G P + A+ DALP G HACGH+ A V I
Sbjct: 62 TGFIATYDSGLDGPAIGFLAEYDALP--------------GLGHACGHNIIGTASVLGAI 107
Query: 197 GAAKILKSREH----LLKPAEEAG-NGAKR--MMADGALEDVEAIFAVHVSHEHPTGVIG 249
G +++ L PAEE G NG+ + + G ++ ++ +H +E I
Sbjct: 108 GLKQVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGVIDQIDIALXIHPGNE-TYKTID 166
Query: 250 SRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVIS-LQGLVSREANPLDSQV 308
+ +L F+ G +A+ + D L A A IS G+ + Q
Sbjct: 167 TLAVDVLD-VKFY--------GKSAHASENADEALNALDAXISYFNGVAQLRQHIKKDQR 217
Query: 309 VSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFF 368
V +GG ++IPD RA + L +++ ++ A C
Sbjct: 218 VHGVILDGGKAANIIPDYTHARFYTRAXTRKELDILTEKVNQIARGAAIQTGCDYEFGPI 277
Query: 369 DKGNTVYPPTVNDEDMY----EHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEVVPAAF 424
G + T +D++ E V + ID Y G+ D S VVP
Sbjct: 278 QNGVNEFIKTPKLDDLFAKYAEEVGEAVID--DDFGY-------GSTDTGNVSHVVPTIH 328
Query: 425 YYIGIKNETLGSIHTGHSPYF 445
+I I + L GH+ F
Sbjct: 329 PHIKIGSRNL----VGHTHRF 345
>pdb|2PCS|A Chain A, Crystal Structure Of Conserved Protein From Geobacillus
Kaustophilus
Length = 162
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 149 GTGGPPFVALRADMDALPIQE---AVEWEYKSKVAGKMHACGHDAHVAMLIGAAKIL--- 202
G GGP FV +D PI + + + Y ++V GK+ A G ML G AK+L
Sbjct: 82 GEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQ----RMLGGVAKLLISD 137
Query: 203 ---KSREHLLKPAEEAGNG 218
K ++ + K +EA G
Sbjct: 138 FFKKIQKEIAKSKQEASEG 156
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 351 VIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGA 410
V+ + V C A F+ KGN VY P ++ + +++ I LL +Y++V
Sbjct: 164 VLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASL 223
Query: 411 EDFSFYSEVV 420
E+ E+V
Sbjct: 224 EESLQADEMV 233
>pdb|3LKZ|A Chain A, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
pdb|3LKZ|B Chain B, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
Length = 321
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 39 DINSLGSSTTAATTPALKPDGGSVKNRSSTSRKPYSS 75
D+N LGS T A P L D +KNR R+ YSS
Sbjct: 278 DVN-LGSGTRAVGKPLLNSDTSKIKNRIERLRREYSS 313
>pdb|2Q2E|A Chain A, Crystal Structure Of The Topoisomerase Vi Holoenzyme From
Methanosarcina Mazei
Length = 369
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 63 KNRSSTSRKPYSSCEVWSRACSKEVMELARRPETVDWLKSVRRT-IHQNPE 112
+NR ST R+ Y E W A KE E R E ++ L S++R H PE
Sbjct: 95 RNRGSTLRELYYISEGWDYAKFKEQGESDRLIEDLEILTSLQREYFHMRPE 145
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 265 VISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREAN----PLDSQVVSVTYFNGGD-H 319
+ GK+G A PH +++PV + A++ L V E N P Q+ ++ NGG
Sbjct: 190 TVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNI---NGGTGA 246
Query: 320 LDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVI 352
++IP + + R + ++ L QR+ ++
Sbjct: 247 TNVIPGELNVKFNFRFSTESTEAGLKQRVHAIL 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,648,354
Number of Sequences: 62578
Number of extensions: 607233
Number of successful extensions: 1367
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 14
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)