Query 011730
Match_columns 478
No_of_seqs 164 out of 1446
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 14:10:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3io1_A Aminobenzoyl-glutamate 100.0 5.6E-57 1.9E-61 471.5 34.7 372 85-471 3-436 (445)
2 1xmb_A IAA-amino acid hydrolas 100.0 3E-56 1E-60 462.6 34.9 383 83-470 13-405 (418)
3 1ysj_A Protein YXEP; M20 famil 100.0 4.2E-55 1.4E-59 452.0 36.9 364 94-469 28-402 (404)
4 3ram_A HMRA protein; two-domai 100.0 8.2E-53 2.8E-57 433.3 29.5 359 83-477 3-386 (394)
5 3pfo_A Putative acetylornithin 100.0 2.4E-49 8.2E-54 412.3 34.0 364 81-469 11-430 (433)
6 3isz_A Succinyl-diaminopimelat 100.0 3.3E-47 1.1E-51 388.5 33.5 351 97-468 2-376 (377)
7 1vgy_A Succinyl-diaminopimelat 100.0 3.3E-47 1.1E-51 391.4 33.2 352 97-469 5-380 (393)
8 1cg2_A Carboxypeptidase G2; me 100.0 2E-47 7E-52 393.0 29.9 360 81-468 4-391 (393)
9 3dlj_A Beta-Ala-His dipeptidas 100.0 3E-46 1E-50 394.5 38.0 369 82-468 11-483 (485)
10 3rza_A Tripeptidase; phosphory 100.0 5.6E-46 1.9E-50 382.7 34.0 351 86-470 14-395 (396)
11 3pfe_A Succinyl-diaminopimelat 100.0 2.1E-46 7E-51 394.5 31.1 369 84-469 5-471 (472)
12 3gb0_A Peptidase T; NP_980509. 100.0 1.9E-45 6.4E-50 375.6 34.3 338 97-466 5-371 (373)
13 3tx8_A Succinyl-diaminopimelat 100.0 1.1E-45 3.7E-50 376.9 25.5 337 96-464 11-368 (369)
14 2f7v_A Aectylcitrulline deacet 100.0 3.3E-45 1.1E-49 373.5 27.5 336 94-464 5-366 (369)
15 3ct9_A Acetylornithine deacety 100.0 8.1E-46 2.8E-50 376.2 22.9 331 94-467 7-355 (356)
16 2zog_A Cytosolic non-specific 100.0 3E-44 1E-48 378.6 34.8 366 84-469 8-477 (479)
17 2pok_A Peptidase, M20/M25/M40 100.0 2.9E-44 1E-48 379.0 30.1 366 84-466 31-480 (481)
18 2rb7_A Peptidase, M20/M25/M40 100.0 9.7E-44 3.3E-48 362.0 23.9 328 97-469 5-361 (364)
19 3ife_A Peptidase T; metallopep 100.0 1.4E-42 4.9E-47 361.5 31.5 346 96-469 25-433 (434)
20 1z2l_A Allantoate amidohydrola 100.0 9.8E-42 3.3E-46 353.9 32.0 339 94-469 5-412 (423)
21 3n5f_A L-carbamoylase, N-carba 100.0 3.2E-41 1.1E-45 348.5 34.6 333 97-467 4-406 (408)
22 3khx_A Putative dipeptidase sa 100.0 5.2E-42 1.8E-46 362.5 29.3 358 84-469 22-491 (492)
23 1fno_A Peptidase T; metallo pe 100.0 2.4E-41 8.3E-46 350.4 30.1 339 99-469 3-407 (417)
24 2qyv_A XAA-His dipeptidase; YP 100.0 6.8E-41 2.3E-45 353.8 30.2 340 97-467 10-485 (487)
25 2v8h_A Beta-alanine synthase; 100.0 5E-41 1.7E-45 353.5 28.2 338 96-469 30-448 (474)
26 3mru_A Aminoacyl-histidine dip 100.0 5E-40 1.7E-44 347.1 27.0 340 97-466 13-486 (490)
27 1lfw_A PEPV; hydrolase, dipept 100.0 2.6E-39 8.8E-44 340.2 30.4 353 87-469 5-467 (470)
28 3t68_A Succinyl-diaminopimelat 100.0 1.1E-27 3.8E-32 233.3 19.6 242 97-468 5-268 (268)
29 4h2k_A Succinyl-diaminopimelat 99.9 1.8E-26 6E-31 224.9 22.7 244 95-468 3-268 (269)
30 2fvg_A Endoglucanase; TM1049, 99.8 8.1E-21 2.8E-25 191.1 13.1 244 103-468 3-335 (340)
31 1q7l_A Aminoacylase-1; catalys 99.8 2.4E-20 8E-25 173.2 13.8 139 97-235 9-173 (198)
32 2wzn_A TET3, 354AA long hypoth 99.8 1.5E-23 5.1E-28 208.0 -13.0 316 101-466 12-347 (354)
33 2wyr_A Cobalt-activated peptid 99.8 1.9E-18 6.6E-23 173.1 17.9 237 100-466 4-332 (332)
34 1vhe_A Aminopeptidase/glucanas 99.8 1.4E-17 4.9E-22 169.4 20.3 249 98-468 7-354 (373)
35 2gre_A Deblocking aminopeptida 99.7 4.7E-17 1.6E-21 164.1 17.9 236 97-465 5-344 (349)
36 1vho_A Endoglucanase; structur 99.7 4E-17 1.4E-21 164.3 16.1 244 98-472 5-340 (346)
37 1y0y_A FRV operon protein FRVX 99.7 1.4E-16 4.8E-21 160.9 17.0 245 100-467 8-349 (353)
38 3cpx_A Aminopeptidase, M42 fam 99.7 3.7E-17 1.3E-21 163.0 8.9 239 94-465 13-320 (321)
39 1ylo_A Hypothetical protein SF 99.7 3.1E-15 1.1E-19 150.6 20.7 244 102-468 7-338 (348)
40 1tkj_A Aminopeptidase, SGAP; d 99.3 2.3E-12 8E-17 125.9 9.7 126 96-238 5-160 (284)
41 3kl9_A PEPA, glutamyl aminopep 99.3 8.8E-11 3E-15 118.0 21.3 67 99-166 4-72 (355)
42 1rtq_A Bacterial leucyl aminop 99.2 1.7E-10 5.9E-15 113.4 12.6 120 97-225 19-164 (299)
43 3tc8_A Leucine aminopeptidase; 99.1 7.4E-10 2.5E-14 109.3 15.9 125 97-225 24-185 (309)
44 3gux_A Putative Zn-dependent e 99.1 1.8E-09 6.2E-14 106.6 14.7 125 97-225 26-188 (314)
45 2afw_A Glutaminyl-peptide cycl 98.9 7.7E-09 2.6E-13 103.0 13.8 127 85-225 22-190 (329)
46 1q7l_B Aminoacylase-1; catalys 98.8 8E-09 2.7E-13 82.3 5.8 79 383-469 2-81 (88)
47 4fuu_A Leucine aminopeptidase; 98.6 9.3E-07 3.2E-11 87.1 15.2 115 98-216 25-162 (309)
48 2vpu_A TET3, 354AA long hypoth 98.5 1.6E-07 5.6E-12 94.1 7.0 66 99-166 10-76 (354)
49 3pb6_X Glutaminyl-peptide cycl 98.4 1.4E-06 4.8E-11 86.4 12.4 117 97-225 38-194 (330)
50 4fai_A CG5976, isoform B; alph 98.4 1.9E-06 6.6E-11 85.6 13.2 128 97-238 37-204 (330)
51 3isx_A Endoglucanase; TM1050, 98.4 4.2E-07 1.4E-11 90.6 7.7 65 100-166 13-77 (343)
52 4f9u_A CG32412; alpha/beta hyd 98.3 2.2E-06 7.6E-11 84.5 11.6 117 98-225 11-163 (312)
53 2ek8_A Aminopeptidase; metallo 97.2 0.00072 2.5E-08 69.2 8.7 100 108-225 162-285 (421)
54 3iib_A Peptidase M28; YP_92679 96.9 0.0019 6.5E-08 66.6 8.6 91 119-226 204-317 (444)
55 2vpu_A TET3, 354AA long hypoth 96.5 0.0031 1.1E-07 62.9 6.5 78 380-466 267-347 (354)
56 3isx_A Endoglucanase; TM1050, 95.9 0.01 3.6E-07 58.7 6.5 74 380-463 265-341 (343)
57 3kas_A Transferrin receptor pr 94.8 0.034 1.2E-06 59.6 6.5 68 142-226 267-350 (640)
58 3fed_A Glutamate carboxypeptid 94.7 0.044 1.5E-06 59.4 7.1 68 142-225 313-394 (707)
59 2glf_A Probable M18-family ami 86.9 1.5 5E-05 44.8 8.0 78 379-465 367-449 (450)
60 1y7e_A Probable M18-family ami 84.2 1.1 3.8E-05 45.9 5.6 76 379-463 376-456 (458)
61 3vat_A Dnpep, aspartyl aminope 82.3 3.1 0.00011 42.9 8.0 79 380-467 404-487 (496)
62 2ijz_A Probable M18-family ami 81.1 0.68 2.3E-05 47.1 2.5 76 380-464 343-423 (428)
63 4eme_A M18 aspartyl aminopepti 77.0 4.6 0.00016 42.2 7.3 80 380-467 472-561 (571)
64 1y7e_A Probable M18-family ami 75.1 1.5 5E-05 45.0 2.9 51 114-166 32-100 (458)
65 2glf_A Probable M18-family ami 71.7 6.1 0.00021 40.2 6.6 62 98-166 21-97 (450)
66 2ijz_A Probable M18-family ami 71.5 1.2 4.2E-05 45.2 1.3 63 104-166 5-86 (428)
67 1tkj_A Aminopeptidase, SGAP; d 65.9 16 0.00056 34.3 7.9 87 381-469 175-278 (284)
68 2glj_A Probable M18-family ami 64.6 7.1 0.00024 39.9 5.3 75 380-463 380-459 (461)
69 1rtq_A Bacterial leucyl aminop 63.8 27 0.00093 33.0 9.2 87 381-471 198-291 (299)
70 3fed_A Glutamate carboxypeptid 53.3 17 0.00057 39.3 6.0 53 81-137 12-67 (707)
71 2glj_A Probable M18-family ami 53.1 3 0.0001 42.6 0.2 62 98-166 25-106 (461)
72 3mru_A Aminoacyl-histidine dip 48.7 31 0.0011 35.2 7.1 48 306-359 347-394 (490)
73 3iib_A Peptidase M28; YP_92679 44.0 17 0.00057 36.8 4.1 61 405-469 369-433 (444)
74 2hc9_A Leucine aminopeptidase 34.5 3.2E+02 0.011 27.8 11.6 41 97-137 166-206 (491)
75 4f9u_A CG32412; alpha/beta hyd 34.4 47 0.0016 31.5 5.4 56 408-469 241-300 (312)
76 2jvf_A De novo protein M7; tet 34.0 1.3E+02 0.0046 21.8 7.1 66 325-400 15-80 (96)
77 2ek8_A Aminopeptidase; metallo 30.7 59 0.002 32.4 5.6 57 407-469 342-402 (421)
78 3vat_A Dnpep, aspartyl aminope 28.0 88 0.003 32.0 6.3 53 113-165 48-119 (496)
79 3kzw_A Cytosol aminopeptidase; 26.6 1E+02 0.0035 31.6 6.4 41 97-137 196-236 (515)
80 1lam_A Leucine aminopeptidase; 26.0 1.4E+02 0.0049 30.4 7.4 42 96-137 159-202 (484)
81 3kas_A Transferrin receptor pr 24.2 54 0.0018 34.9 4.0 52 79-134 3-59 (640)
82 3k9t_A Putative peptidase; str 23.7 1.4E+02 0.0048 29.9 6.7 78 141-238 165-252 (435)
83 3ij3_A Cytosol aminopeptidase; 23.1 1E+02 0.0035 31.3 5.6 42 96-137 165-206 (482)
84 3twe_A Alpha4H; unknown functi 22.7 81 0.0028 17.7 2.6 22 85-108 4-25 (27)
85 1gyt_A Cytosol aminopeptidase; 22.3 1.5E+02 0.0053 30.3 6.9 42 96-137 179-222 (503)
86 3pb6_X Glutaminyl-peptide cycl 21.0 1E+02 0.0036 29.6 5.1 56 407-468 270-329 (330)
87 3h8g_F Cytosol aminopeptidase; 20.2 1.8E+02 0.0063 29.6 6.9 42 96-137 178-220 (497)
No 1
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}
Probab=100.00 E-value=5.6e-57 Score=471.52 Aligned_cols=372 Identities=25% Similarity=0.358 Sum_probs=295.6
Q ss_pred HHHHHHhcCcchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEecc-------------------------
Q 011730 85 KEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL------------------------- 139 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~------------------------- 139 (478)
.+|.+++ +++++++++++++|+++||++++|++++++|.++|+++||++++..
T Consensus 3 ~~~~~~~--~~~~~~~~~~~~~lh~~Pe~~~~E~~t~~~i~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (445)
T 3io1_A 3 LQLDEYL--RQLAPSMTQWRRDFHLHAESGWLEFRTASKVADILDGLGYQLALGRDVIDADSRMGLPDEETLARAFERAR 80 (445)
T ss_dssp CCHHHHH--HTTHHHHHHHHHHHHHTCCCTTCCHHHHHHHHHHHHHTTCEEEEGGGTSCSTTCCSCCCHHHHHHHHHHHH
T ss_pred chHHHHH--HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHCCCeEEecccccccccccccccchhhhhhhhhhc
Confidence 3567788 8889999999999999999999999999999999999999987642
Q ss_pred --------------CCceEEEEEcCC-CCcEEEEEEccccccCCCCCC---CCcc----cccCCeEEeCcchHHHHHHHH
Q 011730 140 --------------AKTGIRAWVGTG-GPPFVALRADMDALPIQEAVE---WEYK----SKVAGKMHACGHDAHVAMLIG 197 (478)
Q Consensus 140 --------------~~~~via~~g~~-~~p~v~~~aHlDvVP~~~~~~---~Pf~----~~~~G~~~g~G~dg~~a~~l~ 197 (478)
+++||+|+++++ ++|+|+|++||||||+++.+. +||. ...+|++||||||++++++|+
T Consensus 81 ~~g~~~~~~~~~~~~~~~vva~~~~~~~g~~i~l~ah~Davp~~e~~~~~~~Pf~~~~~s~~~G~~h~cGhd~~~a~~l~ 160 (445)
T 3io1_A 81 EQGAPERWLPAFEGGFAGVVATLDTGRPGPTLAFRVDMDALDLNEQHDDSHRPHRDHFASCNAGMMHACGHDGHTAIGLG 160 (445)
T ss_dssp TTTCCTTTGGGGTTTCCCEEEEEECSSCCCEEEEEEECCCCCC-------------------------CTTCTHHHHHHH
T ss_pred cccccccccccccCCCCEEEEEEeCCCCCCEEEEEEecCCcCCCCCCCCCcCccccccccCCCCceEecCchHHHHHHHH
Confidence 568999999654 579999999999999876544 4665 346799999999999999999
Q ss_pred HHHHHHhcCCCCC--------CCccCCCcHHHHHHcCCCCCCcEEEEEecCCCCCcceEEeecccccceeeEEEEEEEee
Q 011730 198 AAKILKSREHLLK--------PAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGK 269 (478)
Q Consensus 198 aa~~L~~~~~~l~--------~dEE~g~G~~~l~~~g~~~~~D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~ 269 (478)
+++.|++.+.+++ ++||++.|++.|+++|.++++|++|++|+++..+.|.+....+... +..+++|+++|+
T Consensus 161 aa~~L~~~~~~~~g~v~l~f~p~EE~~~Ga~~~i~~g~~~~~d~~~~~h~~~~~~~g~i~~~~~g~~-a~~~~~i~v~Gk 239 (445)
T 3io1_A 161 LAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAMVAAGVVDDVDYFTAIHIGTGVPAGTVVCGGDNFM-ATTKFDVQFSGV 239 (445)
T ss_dssp HHHHHHHTGGGCCSEEEEEEESCTTTTCHHHHHHHTTTTTTCSEEEEEEEEEEEETTBEESCCCCBC-EEEEEEEEEECC
T ss_pred HHHHHHhCcCcCCceEEEEEeccccccchHHHHHHcCCccccceeEEEeccCCCCCCeEEEecCCee-EEEEEEEEEEee
Confidence 9999998654443 9999878999999999998999999999876666677766555443 346899999999
Q ss_pred cCCC-CCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHH
Q 011730 270 KGGA-ANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRI 348 (478)
Q Consensus 270 ~~Ha-s~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i 348 (478)
++|+ +.|+.|+|||..+++++..|+.+. +... +..+++++.|+||.+.|+||++|++.+++|+.+.++.+++.++|
T Consensus 240 ~~HaGs~P~~g~nAi~~aa~~i~~l~~l~-~~~~--~~~~~~vg~i~gG~~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i 316 (445)
T 3io1_A 240 AAHAGGKPEDGRNALLAAAQAALGLHAIP-PHSA--GASRVNVGVMQAGTGRNVVPSSALLKVETRGESEAINQYVFERA 316 (445)
T ss_dssp CSSTTCCGGGCCCHHHHHHHHHHHHHTCC-CBTT--BCEEEEEEEEEECSCTTSCCCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred cCCCCCCCcCCcCHHHHHHHHHHHHHHHH-hhcC--CCeEEEEEEEecCCCCceeCCeEEEEEEEecCCHHHHHHHHHHH
Confidence 9999 589999999999999999999873 3322 34789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCcccccC-CCCccchHHHHHHhcc-----c
Q 011730 349 EEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVP-PMMGAEDFSFYSEVVP-----A 422 (478)
Q Consensus 349 ~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~~~~~-~~~g~tD~~~~~~~iP-----~ 422 (478)
++++++.+..+++++++++.. .++++.+|+++++.+++++++.+|.+++.... .+++++|+++|++.+| +
T Consensus 317 ~~~~~~~a~~~g~~~~i~~~~----~~~~~~~d~~l~~~~~~a~~~~~g~~~v~~~~~~~~g~~D~~~~~~~~P~~gg~~ 392 (445)
T 3io1_A 317 QHVVAGAAAMYEARYELRMMG----AATASAPSPAWVDYLREQAARVPGVQQAVDRIAAPAGSEDATLMMARVQARGGLA 392 (445)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE----EECCCCCCHHHHHHHHHHHHHSTTCCBCBSSCCCCCBCCTHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHhCCeEEEEEec----CCCCcCCCHHHHHHHHHHHHHhcCCccceecCCCCccHHHHHHHHHHhcccCCce
Confidence 999999999899999998763 46778889999999999999977765432223 3589999999998876 5
Q ss_pred ceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHhhcc
Q 011730 423 AFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNEYG 471 (478)
Q Consensus 423 ~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~~~~ 471 (478)
+++++|++.. ..+|+++|++++++|..++++|+.++.+|+.+.+
T Consensus 393 ~~~~~G~~~~-----~~~H~~~E~i~~~~l~~g~~~~~~~~~~~~~~~~ 436 (445)
T 3io1_A 393 SYMIFGTELS-----AGHHNEKFDFDESVMAVAVETLARVALNFPWQRG 436 (445)
T ss_dssp EEEEEEEEC----------------CCCHHHHHHHHHHHHHHTCCSCC-
T ss_pred EEEEEeCCCC-----CCCCCCCCcCCHHHHHHHHHHHHHHHHHHhhccC
Confidence 6677787642 4699999999999999999999999999988643
No 2
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A
Probab=100.00 E-value=3e-56 Score=462.56 Aligned_cols=383 Identities=55% Similarity=0.941 Sum_probs=305.3
Q ss_pred hHHHHHHHhcCcchH--HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEcCCCCcEEEEEE
Q 011730 83 CSKEVMELARRPETV--DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRA 160 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~--~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~~~p~v~~~a 160 (478)
+++++.+++ +++. +++++++++|++|||+|++|.++++||.++|+++|+++++...++|+++++++++.|+|+|++
T Consensus 13 ~~~~i~~~~--~~~~~~~~~i~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~l~a~~~~~~~~~i~l~a 90 (418)
T 1xmb_A 13 IQTKLLEFA--KSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVALRA 90 (418)
T ss_dssp ---CHHHHH--HSHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHTCCEEEEETTTEEEEEEESSSSCEEEEEE
T ss_pred HHHHHHHHH--HhhhcHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCeeEeccCCcEEEEEEcCCCCCEEEEEe
Confidence 345678888 8888 999999999999999999999999999999999999988765568999999543228999999
Q ss_pred ccccccCCCCCCCCcccccCCeEEeCcchHHHHHHHHHHHHHHhcCCCCC--------CCccCCCcHHHHHHcCCCCCCc
Q 011730 161 DMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLK--------PAEEAGNGAKRMMADGALEDVE 232 (478)
Q Consensus 161 HlDvVP~~~~~~~Pf~~~~~G~~~g~G~dg~~a~~l~aa~~L~~~~~~l~--------~dEE~g~G~~~l~~~g~~~~~D 232 (478)
||||||.++++.+||++..+|++||||+|++++++|+|++.|++.+.+++ ++||++.|++.+++++.++++|
T Consensus 91 H~D~vp~~~~~~~pf~~~~~g~~~g~G~d~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EEg~~G~~~~~~~g~~~~~d 170 (418)
T 1xmb_A 91 DMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVE 170 (418)
T ss_dssp ECCCBSCCCCCCSTTCCSSTTCBCCSSHHHHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTTTTCHHHHHHHTTTTTTEE
T ss_pred cccccCCCCCCCCCcccCCCCceEeCCchHHHHHHHHHHHHHHhccccCCceEEEEEeccccccccHHHHHHcCCcCCCC
Confidence 99999999999999999888999999999999999999999998764332 9999447999999998776789
Q ss_pred EEEEEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEE
Q 011730 233 AIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVT 312 (478)
Q Consensus 233 ~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~ 312 (478)
+++..|+.++.+.|.+....+..++|..+++|+++|+++|+|.|+.|+||+..+++++..|+.+..+..++....+++++
T Consensus 171 ~~i~~~~~~~~~~g~~~~~~~~~~~g~~~~~i~v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~t~~vg 250 (418)
T 1xmb_A 171 AIFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVS 250 (418)
T ss_dssp EEEEEEEEEEEETTCEEECSEEEECEEEEEEEEEEEC---------CCHHHHHHHHHHHHHHTTCBCCSSGGGCEEEEEE
T ss_pred EEEEEecCCCCCCceeEeeeccccccceeEEEEEEecCcccCCCccCCCHHHHHHHHHHHHHHHHhcccCCCCCcEEEEE
Confidence 99998865445556554444445568899999999999999999999999999999999999875444444456789999
Q ss_pred EEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHH
Q 011730 313 YFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVA 392 (478)
Q Consensus 313 ~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~ 392 (478)
.|+||.+.|+||++|++.+++|+++ +.+++.++|++++++.+..+++++++++....++.++++.+|+++++.+++++
T Consensus 251 ~i~gG~~~NvIP~~a~~~~diR~~~--~~~~i~~~i~~~~~~~a~~~g~~~~~~~~~~~~~p~~~~~~d~~l~~~~~~~~ 328 (418)
T 1xmb_A 251 KVNGGNAFNVIPDSITIGGTLRAFT--GFTQLQQRVKEVITKQAAVHRCNASVNLTPNGREPMPPTVNNKDLYKQFKKVV 328 (418)
T ss_dssp EEC--------CCEEEEEEEEEESS--CHHHHHHHHHHHHHHHHHHTTEEEEEESSGGGCCCBCCEEECHHHHHHHHHHH
T ss_pred EEEecCcCCcCCCeEEEEEEEccCc--HHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCcccCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999999 89999999999999988888888888754210122667788999999999999
Q ss_pred HHhcCCCcccccCCCCccchHHHHHHhcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHhhc
Q 011730 393 IDLLGPMNYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNEY 470 (478)
Q Consensus 393 ~~~~G~~~~~~~~~~~g~tD~~~~~~~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~~~ 470 (478)
++++|.++......+++++|+++|++.+|++++++|+++++ +....+|++||+++++++.+++++|+.++.++++++
T Consensus 329 ~~~~g~~~~~~~~~~~g~tD~~~~~~~~P~~~~~~G~~~~~-~~~~~~H~~~E~i~~~~l~~~~~~~~~~~~~l~~~~ 405 (418)
T 1xmb_A 329 RDLLGQEAFVEAAPVMGSEDFSYFAETIPGHFSLLGMQDET-NGYASSHSPLYRINEDVLPYGAAIHASMAVQYLKEK 405 (418)
T ss_dssp HHHHCGGGEEECCCBCCCCTHHHHHTTSCEEEEEEEEECTT-CCSCCTTCTTCCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcceeccCCCCCcchHHHHHHHCCEEEEEEeCCCCC-CCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99889764212467789999999998899987778886532 123569999999999999999999999999999864
No 3
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1
Probab=100.00 E-value=4.2e-55 Score=451.97 Aligned_cols=364 Identities=36% Similarity=0.580 Sum_probs=300.9
Q ss_pred cchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEecc-CCceEEEEEc-CCCCcEEEEEEccccccCCCCC
Q 011730 94 PETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL-AKTGIRAWVG-TGGPPFVALRADMDALPIQEAV 171 (478)
Q Consensus 94 ~~~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~-~~~~via~~g-~~~~p~v~~~aHlDvVP~~~~~ 171 (478)
++..+++++++++|++|||+|++|.++++||.++|+++|++++... +++|+++++. ++++|+|+|++||||||.++|+
T Consensus 28 ~~~~~~~i~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~nv~a~~~g~~~~~~i~l~~H~D~vp~~~~~ 107 (404)
T 1ysj_A 28 KAFHTRLINMRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIAIRADIDALPIQEQT 107 (404)
T ss_dssp HHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCEECCCTTCSSCEEEEEECSSCCCEEEEEEECCCBSCCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCceEEeccCCceEEEEEeCCCCCCEEEEEEecccccCCCCC
Confidence 3457889999999999999999999999999999999999986543 4679999994 4356999999999999999999
Q ss_pred CCCcccccCCeEEeCcchHHHHHHHHHHHHHHhcCCCCC--------CCccCCCcHHHHHHcCCCCCCcEEEEEecCCCC
Q 011730 172 EWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLK--------PAEEAGNGAKRMMADGALEDVEAIFAVHVSHEH 243 (478)
Q Consensus 172 ~~Pf~~~~~G~~~g~G~dg~~a~~l~aa~~L~~~~~~l~--------~dEE~g~G~~~l~~~g~~~~~D~~i~~~~~~~~ 243 (478)
.+||++..+|++||||+|++++++|++++.|++.+..++ ++||.+.|++.+++++.++++|+++.+|+.+..
T Consensus 108 ~~Pf~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~G~~~~~~~g~~~~~d~~i~~h~ep~~ 187 (404)
T 1ysj_A 108 NLPFASKVDGTMHACGHDFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEIAAGARKVLEAGVLNGVSAIFGMHNKPDL 187 (404)
T ss_dssp CCTTCCSSTTCBCTTSHHHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTTTCHHHHHHHTTTTTTEEEEEEEEEETTS
T ss_pred CCCcccCCCCceEcCcChHHHHHHHHHHHHHHhccccCCceEEEEEecccccchhHHHHHhcCCCcCCCEEEEEecCCCC
Confidence 999999888999999999999999999999997644332 999997799999999887778999998765555
Q ss_pred CcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCCCcccee
Q 011730 244 PTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMI 323 (478)
Q Consensus 244 ~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG~~~NvI 323 (478)
+.|.+....|...+|..+++|+++|+++|+|.|+.|+||+..+++++.+|+++..+..++....+++++.|+||.+.|+|
T Consensus 188 ~~g~v~~~~g~~~~g~~~~~i~v~G~~~Has~P~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~vg~i~gG~~~NvI 267 (404)
T 1ysj_A 188 PVGTIGVKEGPLMASVDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQNAVVSITRVQAGTSWNVI 267 (404)
T ss_dssp CTTEEEECSEEEECCEEEEEEEEECC--------CCCCHHHHHHHHHHHHC-----------CCEEEEEEEEECSCSSSC
T ss_pred CCceEEeccChhhcccceEEEEEEccCccccCcccCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEEEEEEcCCCCcee
Confidence 55666555564456788999999999999999999999999999999999877544444555678999999999999999
Q ss_pred cCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHh-cCCCccc
Q 011730 324 PDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDL-LGPMNYR 402 (478)
Q Consensus 324 P~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~G~~~~~ 402 (478)
|++|++.+++|+++.++.+++.+++++++++.+..+++++++++.. .++++.+|+++++.+++++++. +|.++.
T Consensus 268 P~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~g~g~~~~- 342 (404)
T 1ysj_A 268 PDQAEMEGTVRTFQKEARQAVPEHMRRVAEGIAAGYGAQAEFKWFP----YLPSVQNDGTFLNAASEAAARLGYQTVHA- 342 (404)
T ss_dssp CSEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE----EECCEEECGGGHHHHHHHHHHTTCEEEEC-
T ss_pred cCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEEec----CCCCccCCHHHHHHHHHHHHHhcCCcccc-
Confidence 9999999999999999999999999999999888889988887652 4567778889999999999997 676543
Q ss_pred ccCCCCccchHHHHHHhcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHhh
Q 011730 403 VVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 469 (478)
Q Consensus 403 ~~~~~~g~tD~~~~~~~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~~ 469 (478)
. .+++++|+++|++.+|++++++|++.. ..+|++||+++++++.+++++|+.++.+|+++
T Consensus 343 -~-~~~g~tD~~~~~~~~p~~~~~~G~~~~-----~~~H~~~E~v~~~~l~~~~~~~~~~~~~~~~~ 402 (404)
T 1ysj_A 343 -E-QSPGGEDFALYQEKIPGFFVWMGTNGT-----EEWHHPAFTLDEEALTVASQYFAELAVIVLET 402 (404)
T ss_dssp -C-CBSSCCTHHHHHTTSCEEEEEEECCCS-----SCTTCTTCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred -c-cCCccchHHHHHHHCCeEEEEEcCCCC-----CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 2 678899999999889998777787642 46999999999999999999999999999875
No 4
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus}
Probab=100.00 E-value=8.2e-53 Score=433.31 Aligned_cols=359 Identities=21% Similarity=0.258 Sum_probs=305.5
Q ss_pred hHHHHHHHhcCcchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccC--CceEEEEEcCC-CCcEEEEE
Q 011730 83 CSKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA--KTGIRAWVGTG-GPPFVALR 159 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~--~~~via~~g~~-~~p~v~~~ 159 (478)
.+++|.+++ +++++++++++++|++|||+|++|.++++||.++|+++||++++... ++|++++++++ ++|+|+|+
T Consensus 3 ~~~~i~~~~--~~~~~~~~~~~~~l~~~pe~s~~E~~~~~~i~~~l~~~G~~v~~~~~g~~~~via~~~g~~~g~~i~l~ 80 (394)
T 3ram_A 3 EKQQILDYI--ETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFIATYDSGLDGPAIGFL 80 (394)
T ss_dssp HHHHHHHHH--HHTHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEEECSSSSCEEEEE
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHcCCeEEeCCCCCceEEEEEEeCCCCCCEEEEE
Confidence 457889999 99999999999999999999999999999999999999999877543 57999999553 57999999
Q ss_pred EccccccCCCCCCCCcccccCCeEEeCcchHHHHHHHHHHHHHHhcCCCC--------CCCccCC--CcHH-HHHHcCCC
Q 011730 160 ADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLL--------KPAEEAG--NGAK-RMMADGAL 228 (478)
Q Consensus 160 aHlDvVP~~~~~~~Pf~~~~~G~~~g~G~dg~~a~~l~aa~~L~~~~~~l--------~~dEE~g--~G~~-~l~~~g~~ 228 (478)
+|||||| |++|+||||++.+++|++++.|++.+..+ .++||.+ .|++ .|++.|.+
T Consensus 81 ah~D~vp--------------g~~ha~G~d~~~a~~l~aa~~L~~~~~~~~g~v~~~f~~~EE~~~~~Ga~~~~~~~g~~ 146 (394)
T 3ram_A 81 AEYDALP--------------GLGHACGHNIIGTASVLGAIGLKQVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGVI 146 (394)
T ss_dssp ECCCCCT--------------TTSSTTCHHHHHHHHHHHHHHHHTTHHHHCSEEEEEECCCTTCCTTCCHHHHHHHHTGG
T ss_pred EecccCC--------------CcceECCccHHHHHHHHHHHHHHHhHhhCCceEEEEEECCccCCCCCchHHHHHHcCCc
Confidence 9999999 77899999999999999999998753322 2999986 5899 99999988
Q ss_pred CCCcEEEEEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCc
Q 011730 229 EDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-NPHRSVDPVLAASAAVISLQGLVSREANPLDSQ 307 (478)
Q Consensus 229 ~~~D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has-~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~ 307 (478)
+++|++|++||++... .+...+|..+++|+++|+++|+| .|+.|+|||..+++++..|+.+.... + ...
T Consensus 147 ~~~d~~~~~h~~~~~~-------~~~~~~g~~~~~i~v~Gk~~Ha~~~P~~g~nAi~~a~~~i~~l~~l~~~~--~-~~~ 216 (394)
T 3ram_A 147 DQIDIALMIHPGNETY-------KTIDTLAVDVLDVKFYGKSAHASENADEALNALDAMISYFNGVAQLRQHI--K-KDQ 216 (394)
T ss_dssp GGCSEEECCEEESSBB-------CCCCBCEEEEEEEEEECBCCBHHHHGGGCBCHHHHHHHHHHHHHHHGGGS--C-TTC
T ss_pred ccCCEEEEECCccccC-------CCccccceeEEEEEEEccccccCCCCcCCCCHHHHHHHHHHHHHHHHhhC--C-CCC
Confidence 8899999999875421 23344588999999999999999 89999999999999999999874221 1 234
Q ss_pred EEEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEE-ecCCCCCCCCccCCHHHHH
Q 011730 308 VVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDF-FDKGNTVYPPTVNDEDMYE 386 (478)
Q Consensus 308 ~~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~-~~~~~~~~~~~~~d~~l~~ 386 (478)
++++++++||.+.|+||++|++.+++|+.+.++.+++.++|++++++.+..+|+++++++ . ..++++.+|+++++
T Consensus 217 ~~~~~~i~gG~~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~ei~~~~----~~~~~~~~d~~l~~ 292 (394)
T 3ram_A 217 RVHGVILDGGKAANIIPDYTHARFYTRAMTRKELDILTEKVNQIARGAAIQTGCDYEFGPIQ----NGVNEFIKTPKLDD 292 (394)
T ss_dssp EEEEEEEEBCSCTTBCCSEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEESS----CCBCCCCCCHHHHH
T ss_pred eeEEEEEECCCCCceeCCeEEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEec----CCCCCccCCHHHHH
Confidence 577888999999999999999999999999999999999999999999998999999987 4 46778889999999
Q ss_pred HHHHHHHHhcCCCcccccCCCCccchHHHHHHhcccceEEecccCCCCCCCCCCCCCCcc------cCcCchHHHHHHHH
Q 011730 387 HVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFM------IDEDVLPVGAAVHA 460 (478)
Q Consensus 387 ~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~iP~~~~~~G~~~~~~~~~~~~H~~dE~------i~~~~l~~~~~i~a 460 (478)
.+++++++ +| .+.....++++++|+++|++.+|++++|+|.++.. ...|+|++. ++.+.+..++++|+
T Consensus 293 ~~~~a~~~-~G-~~~~~~~~~~g~~D~~~~~~~~P~~~~~~g~~~~~----~~~H~~ef~~~~~~~~~~~~l~~g~~~la 366 (394)
T 3ram_A 293 LFAKYAEE-VG-EAVIDDDFGYGSTDTGNVSHVVPTIHPHIKIGSRN----LVGHTHRFREAAASVHGDEALIKGAKIMA 366 (394)
T ss_dssp HHHHHHHH-TT-CCBCCSCCCCBCCTHHHHTTTSCBCCCEEECSCTT----CCTTSHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hC-cccccCCCCcccccHHHHHHHhchheEEeeecCCC----CCCCCHHHHhccCCCccHHHHHHHHHHHH
Confidence 99999998 68 44322457889999999998899999999987532 468999443 58999999999999
Q ss_pred HHHHHHHhh---cccccccC
Q 011730 461 TIAERFLNE---YGQGWNNW 477 (478)
Q Consensus 461 ~~~~~ll~~---~~~~~~~~ 477 (478)
.++.+++++ -.++|+.|
T Consensus 367 ~~~~~~l~~~~~~~~~~~~~ 386 (394)
T 3ram_A 367 LMGLELITNQDVYQDIIEEH 386 (394)
T ss_dssp HHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 999999986 23555443
No 5
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}
Probab=100.00 E-value=2.4e-49 Score=412.30 Aligned_cols=364 Identities=14% Similarity=0.120 Sum_probs=300.3
Q ss_pred hhhHHHHHHHhcCcchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEec---------------------c
Q 011730 81 RACSKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP---------------------L 139 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~---------------------~ 139 (478)
.+.++++.+++ ++.++++++++++|++|||+|++|.++++||.++|+++|+++++. .
T Consensus 11 ~~~~~~i~~~i--~~~~~~~~~~l~~l~~~ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (433)
T 3pfo_A 11 DAITQSLRAAV--DRNFNDQVAFLQRMVQFRSVRGEEAPQQEWLAQQFADRGYKVDTFSLADVDIASHPKAAPMDTIDPA 88 (433)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTTCEEEEEETGGGTGGGSTTCCCCTTCCGG
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHCCCceEEEecchhhhhccccccccccccCC
Confidence 35678999999 999999999999999999999999999999999999999998652 3
Q ss_pred CCceEEEEEcC-CCCcEEEEEEccccccCCC---CCCCCcccc-cCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC-
Q 011730 140 AKTGIRAWVGT-GGPPFVALRADMDALPIQE---AVEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK- 210 (478)
Q Consensus 140 ~~~~via~~g~-~~~p~v~~~aHlDvVP~~~---~~~~Pf~~~-~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~- 210 (478)
+++|+++++++ +++|+|+|++||||||.++ |+..||++. .+|++||||+ | ++++++|++++.|++.+.+++
T Consensus 89 ~~~~via~~~g~~~~~~v~l~aH~D~vp~~~~~~w~~~pf~~~~~~g~~~g~G~~D~k~~~a~~l~a~~~l~~~~~~~~~ 168 (433)
T 3pfo_A 89 GSMQVVATADSDGKGRSLILQGHIDVVPEGPVDLWSDPPYEAKVRDGWMIGRGAQDMKGGVSAMIFALDAIRTAGYAPDA 168 (433)
T ss_dssp GCEEEEEEECCCCCSCCEEEEEECCBCCCCCGGGCSSCTTTCCEETTEEECTTTTTTHHHHHHHHHHHHHHHHTTEEESS
T ss_pred CCcEEEEEEecCCCCCEEEEEcccCCcCCCCcccCCCCCCCcEEECCEEEecchhhhhHHHHHHHHHHHHHHHcCCCCCc
Confidence 46899999953 4579999999999999764 477899984 6899999998 3 899999999999998754322
Q ss_pred -------CCccCC-CcHHHHHHcCCCCCCcEEEEEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCH
Q 011730 211 -------PAEEAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDP 282 (478)
Q Consensus 211 -------~dEE~g-~G~~~l~~~g~~~~~D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NA 282 (478)
++||.+ .|++.+++.++ ++|++|+.||+.. .+.. + .+|..+++|+++|+++|+|.|+.|+||
T Consensus 169 ~v~~~~~~~EE~g~~G~~~~~~~~~--~~d~~i~~ep~~~----~i~~--~--~~G~~~~~i~v~G~~~Ha~~p~~g~nA 238 (433)
T 3pfo_A 169 RVHVQTVTEEESTGNGALSTLMRGY--RADACLIPEPTGH----TLTR--A--QVGAVWFRLRVRGTPVHVAYSETGTSA 238 (433)
T ss_dssp CEEEEEESCTTTTCHHHHHHHHTTC--CCSEEEECCCCSS----CEEE--E--ECEEEEEEEEEECCCCBGGGGGGSCCH
T ss_pred cEEEEEEecCccCChhHHHHHhcCC--CCCEEEEeCCCCC----ceEE--e--cceEEEEEEEEEcCCCccCCCCcCcCH
Confidence 999976 58999998875 6899999887541 2222 2 347889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcc-----cCC-----CCCcEEEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHH
Q 011730 283 VLAASAAVISLQGLVSRE-----ANP-----LDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVI 352 (478)
Q Consensus 283 i~~~~~~i~~l~~l~~~~-----~~~-----~~~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~ 352 (478)
+..+++++..|+.+..+. ..+ ..+.++++|.|+||.+.|+||++|++.+++|++|.++.+++.++|++++
T Consensus 239 i~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vg~i~gG~~~NvIP~~a~~~~~iR~~~~~~~~~~~~~i~~~~ 318 (433)
T 3pfo_A 239 ILSAMHLIRAFEEYTKELNAQAVRDPWFGQVKNPIKFNVGIIKGGDWASSTAAWCELDCRLGLLTGDTPQEAMRGIEKCL 318 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGCTTTTTSSSCSCEEEEEEEECSCTTBCCCEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCccccccCCCceEEeeeEECCCCCcccCcEEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 999999999998875321 122 2346899999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC----CeeEEEEecCCCCCCCCc--cCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHH--hcccce
Q 011730 353 VEQARVFR----CSATVDFFDKGNTVYPPT--VNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSE--VVPAAF 424 (478)
Q Consensus 353 ~~~~~~~g----~~~ev~~~~~~~~~~~~~--~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~--~iP~~~ 424 (478)
++.+..++ +++++++.. ..+++. ..|+++++.+++++++.+|.++. ...+++++|+++|.. .+|+++
T Consensus 319 ~~~~~~~~~~~~~~~~v~~~~---~~~p~~~~~~d~~~~~~~~~a~~~~~G~~~~--~~~~~g~~D~~~~~~~~giP~v~ 393 (433)
T 3pfo_A 319 ADAQATDSFLSENPAELVWSG---FQADPAVCEPGGVAEDVLTAAHKAAFNAPLD--ARLSTAVNDTRYYSVDYGIPALC 393 (433)
T ss_dssp HHHHTTCHHHHHSCCEEEEEE---EEECCEECCTTCHHHHHHHHHHHHHHSSCCC--EEEESSCCTHHHHHHTTCCCEEE
T ss_pred HHHhhhCcccccCCeEEEEec---ccCCcccCCCCCHHHHHHHHHHHHHhCCCCc--eeeeeeeccHHHHHhhCCCCEEE
Confidence 98876542 456666542 123333 35788999999999988897643 356788999999986 499874
Q ss_pred EEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHhh
Q 011730 425 YYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 469 (478)
Q Consensus 425 ~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~~ 469 (478)
+|++. ..+|+++|++++++|..++++|+.++.+|++-
T Consensus 394 --~Gp~~------~~~H~~~E~i~~~~l~~~~~~~~~~i~~~~~~ 430 (433)
T 3pfo_A 394 --YGPYG------QGPHAFDERIDLESLRKTTLSIALFVAEWCGL 430 (433)
T ss_dssp --CCCCE------ECTTSTTCEEEHHHHHHHHHHHHHHHHHHHCE
T ss_pred --ECCCC------ccCCCCCceEEHHHHHHHHHHHHHHHHHHhcc
Confidence 56552 36999999999999999999999999999863
No 6
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A
Probab=100.00 E-value=3.3e-47 Score=388.50 Aligned_cols=351 Identities=16% Similarity=0.195 Sum_probs=276.9
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEec--cCCceEEEEEcCCCCcEEEEEEccccccCCC---CC
Q 011730 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP--LAKTGIRAWVGTGGPPFVALRADMDALPIQE---AV 171 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~--~~~~~via~~g~~~~p~v~~~aHlDvVP~~~---~~ 171 (478)
.+++++++++|++|||+|++|.++++||.++|+++|++++.. ...+|+++++|. ++|+|+|++||||||.++ |+
T Consensus 2 ~~~~~~~~~~L~~~ps~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~n~~a~~g~-~~~~i~l~aH~D~vp~~~~~~w~ 80 (377)
T 3isz_A 2 KEKVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFNDTLNLWAKHGT-SEPVIAFAGHTDVVPTGDENQWS 80 (377)
T ss_dssp HHHHHHHHHHHHTSCCBTTCCTTHHHHHHHHHHHTTCEEEECCBTTBCEEEEEEES-SSCEEEEEEECCBCCCCCGGGCS
T ss_pred chHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHCCCceEEeecCCCceEEEEeCC-CCCEEEEeccccccCCCCcccCC
Confidence 467899999999999999999999999999999999998753 245799999854 479999999999999865 57
Q ss_pred CCCcccc-cCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC--------CCccCC--CcHHHHHHcCCC--CCCcEEE
Q 011730 172 EWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK--------PAEEAG--NGAKRMMADGAL--EDVEAIF 235 (478)
Q Consensus 172 ~~Pf~~~-~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~--------~dEE~g--~G~~~l~~~g~~--~~~D~~i 235 (478)
..||.+. .+|++||||+ | ++++++|.+++.+++.+.+++ ++||.+ .|++.+++.... ..+|+++
T Consensus 81 ~~pf~~~~~~g~~~g~G~~D~k~g~~~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~~ 160 (377)
T 3isz_A 81 SPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDEKITYCM 160 (377)
T ss_dssp SCTTSCCEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCSSSHHHHHHHHHHTTCCCCEEE
T ss_pred CCCCCcEEECCEEEeCChhhhhHHHHHHHHHHHHHHHhCCCCCceEEEEEEcccccCccccHHHHHHHHHhcCCCCCEEE
Confidence 8899987 5899999999 6 677778888888776654443 999986 499888764221 2589999
Q ss_pred EEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcc-cCCCCCcEEEEEEE
Q 011730 236 AVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE-ANPLDSQVVSVTYF 314 (478)
Q Consensus 236 ~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~-~~~~~~~~~~v~~i 314 (478)
+.|++...+.|.. +..|. .|..+++++++|+++|+|.|+.|+||+..+++++.+|+.+..+. ...+...+++++.+
T Consensus 161 ~~e~~~~~~~g~~-i~~g~--~g~~~~~i~~~G~~~Ha~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~v~~i 237 (377)
T 3isz_A 161 VGEPSSAKNLGDV-VKNGR--RGSITGNLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDKGNEFFPPTSLQIANI 237 (377)
T ss_dssp ECCCCBSSSTTSE-EEEEE--CEEEEEEEEEECC-------CGGGCHHHHHHHHHHHHHHCCCCCCCSSSCCCEEEEEEE
T ss_pred EcCCCCcccCCce-EEEEc--ceEEEEEEEEEccccccCCCccCcCHHHHHHHHHHHHHhccccccccccCCceeEEEEE
Confidence 9887654444432 22232 37789999999999999999999999999999999998864222 12246688999999
Q ss_pred eCCC-ccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHH
Q 011730 315 NGGD-HLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAI 393 (478)
Q Consensus 315 ~gG~-~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 393 (478)
+||. +.|+||++|++.+++|+++.++.+++.+++++++++ +|+++++++.. ..+|...+++++++.++++++
T Consensus 238 ~gg~~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~~~~----~g~~~~i~~~~---~~~p~~~~~~~l~~~l~~a~~ 310 (377)
T 3isz_A 238 HAGTGSNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEK----HNLKYRIEWNL---SGKPFLTKPGKLLDSITSAIE 310 (377)
T ss_dssp EECCSCSSCCCSEEEEEEEEEECTTSCHHHHHHHHHHHHHH----TTCCEEEEEEE---CCCCEECCTTHHHHHHHHHHH
T ss_pred ECCCCCCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHH----cCCCeEEEEEe---cCCCCcCCCCHHHHHHHHHHH
Confidence 9998 899999999999999999999999999999988875 57888887753 223333467889999999999
Q ss_pred HhcCCCcccccCCCCccchHHHHHHh-cccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHh
Q 011730 394 DLLGPMNYRVVPPMMGAEDFSFYSEV-VPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLN 468 (478)
Q Consensus 394 ~~~G~~~~~~~~~~~g~tD~~~~~~~-iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~ 468 (478)
+.+|.++. ...+++++|++++... +|++. +|++. ..+|++||+++++++.+++++|++++.+||+
T Consensus 311 ~~~g~~~~--~~~~~g~tDa~~~~~~g~~~v~--~Gp~~------~~~H~~~E~i~~~~l~~~~~i~~~~i~~ll~ 376 (377)
T 3isz_A 311 ETIGITPK--AETGGGTSDGRFIALMGAEVVE--FGPLN------STIHKVNECVSVEDLGKCGEIYHKMLVNLLD 376 (377)
T ss_dssp HHHSCCCE--EEECSSCCSHHHHHTTTCEEEE--CCSBC------TTTTSTTCEEEHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhCCCCe--eeccCcccHHHHHHHcCCCEEE--ECCCC------CcccCCCCcEEHHHHHHHHHHHHHHHHHHhh
Confidence 98897653 3456789999999875 66654 46553 3599999999999999999999999999875
No 7
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1
Probab=100.00 E-value=3.3e-47 Score=391.38 Aligned_cols=352 Identities=16% Similarity=0.201 Sum_probs=282.7
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEec--cCCceEEEEEcCCCCcEEEEEEccccccCCC---CC
Q 011730 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP--LAKTGIRAWVGTGGPPFVALRADMDALPIQE---AV 171 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~--~~~~~via~~g~~~~p~v~~~aHlDvVP~~~---~~ 171 (478)
.+++++++++|++|||+|++|.++++||.++|+++||+++.. ...+|++++++. ++|+|+|++||||||.++ |+
T Consensus 5 ~~~~~~~l~~lv~~ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~nv~a~~g~-~~~~i~l~~H~D~Vp~~~~~~w~ 83 (393)
T 1vgy_A 5 ETQSLELAKELISRPSVTPDDRDCQKLMAERLHKIGFAAEEMHFGNTKNIWLRRGT-KAPVVCFAGHTDVVPTGPVEKWD 83 (393)
T ss_dssp CSHHHHHHHHHHTSCCBTTCCTTHHHHHHHHHHTTTCEEEECCBTTBCEEEEEECS-SSSEEEEEEECCBCCCCCGGGSS
T ss_pred hHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCCcEEEEecCCCcEEEEEECC-CCCEEEEEcccCCcCCCCcccCC
Confidence 357899999999999999999999999999999999998763 245799999954 368999999999999865 56
Q ss_pred CCCcccc-cCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC--------CCccCC--CcHHHHHHcCCC--CCCcEEE
Q 011730 172 EWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK--------PAEEAG--NGAKRMMADGAL--EDVEAIF 235 (478)
Q Consensus 172 ~~Pf~~~-~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~--------~dEE~g--~G~~~l~~~g~~--~~~D~~i 235 (478)
.+||++. .+|++||||+ | +.++++|.+++.|++.+.+++ ++||.+ .|++.+++.... ..+|+++
T Consensus 84 ~~Pf~~~~~~g~l~grG~~D~k~~~aa~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~~Ga~~~~~~~~~~~~~~d~~i 163 (393)
T 1vgy_A 84 SPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCI 163 (393)
T ss_dssp SCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCceEEECCEEEecCcccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCcCCHHHHHHHHHhcCcCCCEEE
Confidence 7799985 6899999999 6 677888888888887654433 999975 588888764322 2478999
Q ss_pred EEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhccc-CCCCCcEEEEEEE
Q 011730 236 AVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREA-NPLDSQVVSVTYF 314 (478)
Q Consensus 236 ~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~-~~~~~~~~~v~~i 314 (478)
+.||+...+.+.. +..| .+|..+++|+++|+++|+|.|+.|+||+..+++++.+|+.+..+.. ..+.+.+++++.|
T Consensus 164 ~~e~~~~~~~g~~-i~~g--~~G~~~~~i~v~G~~~Ha~~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~v~~i 240 (393)
T 1vgy_A 164 VGEPTAVDKLGDM-IKNG--RRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNI 240 (393)
T ss_dssp ECCCCBSSSTTSE-EECE--ECEEEEEEEEEECBCEETTCGGGCBCHHHHHHHHHHHHHHCCCCCCCSSCCCCEEEEEEE
T ss_pred EeCCCCcccCCce-eEEe--eeeEEEEEEEEEccCcccCCCccCCCHHHHHHHHHHHhhcccccccccccCCCeEEEeeE
Confidence 8887654333332 1223 2478899999999999999999999999999999999988642221 2345678999999
Q ss_pred eCCC-ccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHH
Q 011730 315 NGGD-HLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAI 393 (478)
Q Consensus 315 ~gG~-~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 393 (478)
+||. +.|+||++|++.+++|+++.++.+++.++|+++++. .++++++++.. ..+|...+++++++.++++++
T Consensus 241 ~gG~~~~NviP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~----~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~ 313 (393)
T 1vgy_A 241 NGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDK----HGVQYDLQWSC---SGQPFLTQAGKLTDVARAAIA 313 (393)
T ss_dssp EECCSCTTEECSEEEEEEEEEECTTSCHHHHHHHHHHHHHH----TTCCEEEEEEE---EECCEECCSSHHHHHHHHHHH
T ss_pred cCCCCCCcccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHH----hCCCeEEEEec---CCCcccCCCcHHHHHHHHHHH
Confidence 9997 899999999999999999999999999999998875 46677776642 123334467899999999999
Q ss_pred HhcCCCcccccCCCCccchHHHHHH-hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHhh
Q 011730 394 DLLGPMNYRVVPPMMGAEDFSFYSE-VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 469 (478)
Q Consensus 394 ~~~G~~~~~~~~~~~g~tD~~~~~~-~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~~ 469 (478)
+.+|.++. ...+++++|+++|.. .+|++. +|++. ..+|++||+++++++.+++++|+.++.+|+..
T Consensus 314 ~~~g~~~~--~~~~~g~~D~~~~~~~~~P~v~--~Gp~~------~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 380 (393)
T 1vgy_A 314 ETCGIEAE--LSTTGGTSDGRFIKAMAQELIE--LGPSN------ATIHQINENVRLNDIPKLSAVYEGILVRLLAG 380 (393)
T ss_dssp HHHSSCCE--EECCSCCCTHHHHGGGEEEEEE--CCSBC------TTTTSTTCEEETTHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCCce--EecCCccchHHHHHhCCCCEEE--ECCCC------CCCCCCCCceeHHHHHHHHHHHHHHHHHHhcc
Confidence 98897653 346678999999987 688643 56643 35999999999999999999999999999775
No 8
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Probab=100.00 E-value=2e-47 Score=392.97 Aligned_cols=360 Identities=15% Similarity=0.159 Sum_probs=294.0
Q ss_pred hhhHHHHHHHhcCcchHHHHHHHHHHhhcCCCCCcch---HHHHHHHHHHHHhCCCcEEecc-----CCceEEEEEcCCC
Q 011730 81 RACSKEVMELARRPETVDWLKSVRRTIHQNPELAFQE---FETSRLLRAELDRMEIGYKYPL-----AKTGIRAWVGTGG 152 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~l~~~L~~iPs~s~~E---~~~a~~l~~~L~~~G~~v~~~~-----~~~~via~~g~~~ 152 (478)
+.+.+++.+++ +...+++++++++|++|||+|++| .++++||.++|+++|++++... .++|+++++++.+
T Consensus 4 ~~~~~~~~~~~--~~~~~~~~~~l~~lv~i~s~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~v~a~~~g~~ 81 (393)
T 1cg2_A 4 QKRDNVLFQAA--TDEQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRG 81 (393)
T ss_dssp CCCCHHHHHHH--HHHHHHHHHHHHHHHTSCCBTTCHHHHHHHHHHHHHHHHHTTCEEEEEECSTTCCSEEEEEEEECSS
T ss_pred cchhhHHHHHH--HhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEecCcCCCCCeEEEEECCCC
Confidence 44557888999 888999999999999999999876 6899999999999999987653 2569999996433
Q ss_pred CcEEEEEEccccccC-CCCCCCCcccccCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC--------CCccCC-CcH
Q 011730 153 PPFVALRADMDALPI-QEAVEWEYKSKVAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK--------PAEEAG-NGA 219 (478)
Q Consensus 153 ~p~v~~~aHlDvVP~-~~~~~~Pf~~~~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~--------~dEE~g-~G~ 219 (478)
+|+|+|++||||||. ++++.|||. .++|++||||+ | ++++++|.+++.|++.+.++. ++||.+ .|+
T Consensus 82 ~~~i~l~aH~D~vp~~~~~~~~Pf~-~~~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~G~ 160 (393)
T 1cg2_A 82 GKNLLLMSHMDTVYLKGILAKAPFR-VEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGS 160 (393)
T ss_dssp CCCEEEEEECCBSCCTTHHHHSCCE-EETTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTTTTT
T ss_pred CceEEEEEecCcCCCCCccccCCee-eeCCEEEcCCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEEcccccCCccH
Confidence 589999999999996 445778998 56799999997 4 789999999999998765432 999976 589
Q ss_pred HHHHHcCCCCCCcEEEEEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHHhhhh
Q 011730 220 KRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-NPHRSVDPVLAASAAVISLQGLVS 298 (478)
Q Consensus 220 ~~l~~~g~~~~~D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has-~p~~g~NAi~~~~~~i~~l~~l~~ 298 (478)
+.+++.+. .++|++|++|++.. +.+.+... .+|..+++|+++|+++|+| .|+.|+||+..+++++..|+.+..
T Consensus 161 ~~~~~~~~-~~~d~~i~~e~~~~-~~~~i~~~----~~G~~~~~i~v~G~~~Hag~~p~~g~nAi~~~~~~i~~l~~~~~ 234 (393)
T 1cg2_A 161 RDLIQEEA-KLADYVLSFEPTSA-GDEKLSLG----TSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDD 234 (393)
T ss_dssp HHHHHHHH-HHCSEEEECCCEET-TSCEEESE----ECEEEEEEEEEECBCEETTSCGGGSBCHHHHHHHHHHHHGGGCB
T ss_pred HHHHHHHh-hcCCEEEEeCCCCC-CCCcEEEe----eeeeEEEEEEEEeeecccCCCcccCcCHHHHHHHHHHHHHhhhC
Confidence 88887643 25899999987531 22333221 2378899999999999997 699999999999999999988742
Q ss_pred cccCCCCCcEEEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCc
Q 011730 299 REANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPT 378 (478)
Q Consensus 299 ~~~~~~~~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~ 378 (478)
+....+++++.|+||.+.|+||++|++.+++|+++.++.+++.++|++++++ +...++++++++.. .++++
T Consensus 235 ----~~~~~~~~v~~i~gG~~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~-~~~~~~~~~~~~~~----~~~~~ 305 (393)
T 1cg2_A 235 ----KAKNLRFNWTIAKAGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQ-KKLPEADVKVIVTR----GRPAF 305 (393)
T ss_dssp ----TTTTEEEEEEEEEECSSTTEECSEEEEEEEEEESSHHHHHHHHHHHHHHHTS-CSSTTCEEEEEEEE----CSCCE
T ss_pred ----cccCceEEEEEEeCCCCCCEECcccEEEEEEeeCChhhHHHHHHHHHHHHhc-ccCCCcEEEEEecc----ccCCc
Confidence 2345789999999999999999999999999999999999999999999876 33457888887653 45565
Q ss_pred cC---CHHHHHHHHHHHHHhcCCCcccccCC-CCccchHHHHHHh-cccceEEecccCCCCCCCCCCCC-CCcccCcCch
Q 011730 379 VN---DEDMYEHVKKVAIDLLGPMNYRVVPP-MMGAEDFSFYSEV-VPAAFYYIGIKNETLGSIHTGHS-PYFMIDEDVL 452 (478)
Q Consensus 379 ~~---d~~l~~~~~~~~~~~~G~~~~~~~~~-~~g~tD~~~~~~~-iP~~~~~~G~~~~~~~~~~~~H~-~dE~i~~~~l 452 (478)
.+ ++++++.+++++++ +|.+.. ... +++++|+++|... +|+++ ++|++. ..+|+ ++|++++++|
T Consensus 306 ~~~~~~~~l~~~~~~~~~~-~g~~~~--~~~~~~g~tD~~~~~~~giP~~~-~~G~~~------~~~H~~~~E~i~~~~l 375 (393)
T 1cg2_A 306 NAGEGGKKLVDKAVAYYKE-AGGTLG--VEERTGGGTDAAYAALSGKPVIE-SLGLPG------FGYHSDKAEYVDISAI 375 (393)
T ss_dssp ECHHHHHHHHHHHHHHHHH-TTCCCE--EESCBSCCCTHHHHGGGSCCEEC-CCSCEE------ECTTSSSCCEEEGGGH
T ss_pred cCCcchHHHHHHHHHHHHH-hCCCCc--cccCCCcccHHHHHHhCCCCEEE-eCCCCC------CCccCCCcceEEehhH
Confidence 54 36899999999986 687542 345 7789999999876 89864 345532 35899 9999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 011730 453 PVGAAVHATIAERFLN 468 (478)
Q Consensus 453 ~~~~~i~a~~~~~ll~ 468 (478)
.+++++|+.++.+|++
T Consensus 376 ~~~~~~~~~~~~~l~~ 391 (393)
T 1cg2_A 376 PRRLYMAARLIMDLGA 391 (393)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999875
No 9
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}
Probab=100.00 E-value=3e-46 Score=394.54 Aligned_cols=369 Identities=16% Similarity=0.117 Sum_probs=292.7
Q ss_pred hhHHHHHHHhcCcchHHHHHHHHHHhhcCCCC--Ccc------hHHHHHHHHHHHHhCCCcEEeccC-------------
Q 011730 82 ACSKEVMELARRPETVDWLKSVRRTIHQNPEL--AFQ------EFETSRLLRAELDRMEIGYKYPLA------------- 140 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~l~~~L~~iPs~--s~~------E~~~a~~l~~~L~~~G~~v~~~~~------------- 140 (478)
..++++.+++ +++++++++++++|++|||+ |++ |.++++||.++|+++||++++...
T Consensus 11 ~~~~~i~~~i--~~~~~~~i~~l~~lv~ips~~~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~ 88 (485)
T 3dlj_A 11 ALLEKVFQYI--DLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQSLPI 88 (485)
T ss_dssp TTHHHHHHHH--HHTHHHHHHHHHHHHTSCCBSSSCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCEEEC--CCEEEC
T ss_pred HHHHHHHHHH--HHhHHHHHHHHHHHhcCCCccCCCCccccHHHHHHHHHHHHHHHHcCCeEEEEecCcccccCCCccCC
Confidence 3457889999 99999999999999999999 887 678999999999999999876431
Q ss_pred CceEEEEEcCC-CCcEEEEEEccccccCCC---CCCCCcccc-cCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC--
Q 011730 141 KTGIRAWVGTG-GPPFVALRADMDALPIQE---AVEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK-- 210 (478)
Q Consensus 141 ~~~via~~g~~-~~p~v~~~aHlDvVP~~~---~~~~Pf~~~-~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~-- 210 (478)
.+|++++++++ ++|+|+|+|||||||+++ |+..||++. ++|++||||+ | ++++++|+|+++|++.+.+++
T Consensus 89 ~~~v~a~~~~~~~~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~~~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~ 168 (485)
T 3dlj_A 89 PPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVN 168 (485)
T ss_dssp CCEEEEEECCCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSE
T ss_pred CcEEEEEECCCCCCCEEEEEeeecCCCCCCcccCCCCCCccEEECCEEEecccccCcHHHHHHHHHHHHHHHhCCCCCcc
Confidence 24799999654 469999999999999864 578899986 6899999999 4 899999999999998775543
Q ss_pred ------CCccCC-CcHHHHHHcCC---CCCCcEEEEEecCCCC-CcceEEeecccccceeeEEEEEEEeecC--CCCCCC
Q 011730 211 ------PAEEAG-NGAKRMMADGA---LEDVEAIFAVHVSHEH-PTGVIGSRPGPLLAGCGFFHAVISGKKG--GAANPH 277 (478)
Q Consensus 211 ------~dEE~g-~G~~~l~~~g~---~~~~D~~i~~~~~~~~-~~g~i~~~~g~~~~g~~~~~i~v~G~~~--Has~p~ 277 (478)
++||.+ .|++.+++++. ++++|++|++|+.... ....+ ..| .+|..+++|+++|+++ |+|.
T Consensus 169 v~~~~~~~EE~g~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~g--~~g~~~~~i~v~G~~~~~H~~~-- 242 (485)
T 3dlj_A 169 IKFIIEGMEEAGSVALEELVEKEKDRFFSGVDYIVISDNLWISQRKPAI--TYG--TRGNSYFMVEVKCRDQDFHSGT-- 242 (485)
T ss_dssp EEEEEESCGGGTTTTHHHHHHHHTTTTSTTCCEEEECCCBCCC--CCEE--EEE--ECEEEEEEEEEESCSSCEETTT--
T ss_pred EEEEEEcccccCCccHHHHHHhhhhhcccCCCEEEEcCCCccCCCCeeE--EEe--ccceEEEEEEEEECCCCCcCCC--
Confidence 999977 59999998753 5679999999964211 11222 222 2478999999999999 9997
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcc-----------cCC-------------C---------------------------CC
Q 011730 278 RSVDPVLAASAAVISLQGLVSRE-----------ANP-------------L---------------------------DS 306 (478)
Q Consensus 278 ~g~NAi~~~~~~i~~l~~l~~~~-----------~~~-------------~---------------------------~~ 306 (478)
.|.||+..+..++..|+.+..+. ..| + ..
T Consensus 243 ~g~~a~~~~~~l~~~l~~l~~~~g~i~ipg~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 322 (485)
T 3dlj_A 243 FGGILHEPMADLVALLGSLVDSSGHILVPGIYDEVVPLTEEEINTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRY 322 (485)
T ss_dssp STTSSCCHHHHHHHHHTTSBCTTSCBCSTTTTTTSCCCCHHHHHHHHTSCCCHHHHHHHHTCSCCSCSSHHHHHHHHHTS
T ss_pred CCccccCHHHHHHHHHHhhCCCCCCEeCCCcccccCCCCHHHHHHHHhCCCCHHHHHHhcCCCcccccchHHHHHHHhcC
Confidence 35555555555555555543221 111 1 15
Q ss_pred cEEEEEEEeCC----CccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcC--CeeEEEEecCCCCCCCCccC
Q 011730 307 QVVSVTYFNGG----DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFR--CSATVDFFDKGNTVYPPTVN 380 (478)
Q Consensus 307 ~~~~v~~i~gG----~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g--~~~ev~~~~~~~~~~~~~~~ 380 (478)
.+++|+.|+|| .+.||||++|++.+++|+.+.++.+++.++|+++++..+..+| +++++++.. .++++.+
T Consensus 323 ~~~~v~~i~gG~~gp~a~NVIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~a~~~g~~~~~~v~~~~----~~pp~~~ 398 (485)
T 3dlj_A 323 PSLSIHGIEGAFDEPGTKTVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTL----GLHPWIA 398 (485)
T ss_dssp CEEEEEEEESSCCSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCSSEEEEEEEE----EECCEEC
T ss_pred CceEEEEEecCCcCCCCCceeCCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCeeEEEEEcC----CCCceeC
Confidence 78999999999 8999999999999999999999999999999999999998888 477877653 4556555
Q ss_pred C--HHHHHHHHHHHHHhcCCCcccccCCCCccchHH-HHHHhcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHH
Q 011730 381 D--EDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFS-FYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAA 457 (478)
Q Consensus 381 d--~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~-~~~~~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~ 457 (478)
+ +++++.+++++++++|.++.. ..+++++|++ +|.+.+|..++++|.++.. ..+|+|+|++++++|..+++
T Consensus 399 ~~d~~~~~~~~~a~~~~~G~~~~~--~~~ggs~Dfa~~~~~~~p~~~i~~g~g~~~----~~~H~p~E~i~~~~l~~g~~ 472 (485)
T 3dlj_A 399 NIDDTQYLAAKRAIRTVFGTEPDM--IRDGSTIPIAKMFQEIVHKSVVLIPLGAVD----DGEHSQNEKINRWNYIEGTK 472 (485)
T ss_dssp CTTSHHHHHHHHHHHHHHSSCCEE--EEESSCCHHHHHHHHHTC--CEECCCBCTT----CCTTSTTCEEEHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCcee--cCCCCchhHHHHHHHHhCCCEEEecCCCCC----CCCcCCCCCccHHHHHHHHH
Confidence 4 489999999999988987642 3467889975 7777788878888887542 46999999999999999999
Q ss_pred HHHHHHHHHHh
Q 011730 458 VHATIAERFLN 468 (478)
Q Consensus 458 i~a~~~~~ll~ 468 (478)
+|+.++.+|.+
T Consensus 473 ~l~~~l~~la~ 483 (485)
T 3dlj_A 473 LFAAFFLEMAQ 483 (485)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 10
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.6e-46 Score=382.67 Aligned_cols=351 Identities=17% Similarity=0.193 Sum_probs=284.5
Q ss_pred HHHHHhcCcchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEecc-------CCceEEEEEcC----CCCc
Q 011730 86 EVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL-------AKTGIRAWVGT----GGPP 154 (478)
Q Consensus 86 ~~~~~~~~~~~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~-------~~~~via~~g~----~~~p 154 (478)
.+..++ +..++++++++++|++|||+|++|.++++||.++|+++|+++++.. ..+|+++++.+ +++|
T Consensus 14 ~~~~~~--~~~~~~~~~~l~~L~~ips~s~~E~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~nvia~~~g~~~~~~~~ 91 (396)
T 3rza_A 14 NLYFQG--MINEQRLLNTFLELVQIDSETGNESTIQPILKEKFIALGLDVKEDEAAKHPKLGANNLVCTMNSTIEEGEVP 91 (396)
T ss_dssp -----C--CSCHHHHHHHHHHHHTSCCBTTCTTTHHHHHHHHHHHTTCEEEECSGGGSTTCSSCCEEEEECCCCC---CC
T ss_pred ceeEEE--eecHHHHHHHHHHHeecCCCCcCHHHHHHHHHHHHHHCCCEEEEeccccccCCCCceEEEEECCcCCCCCCC
Confidence 445666 7789999999999999999999999999999999999999987643 25799999944 3479
Q ss_pred EEEEEEccccccCCCCCCCCcccc-cC-CeEEeCcc-----h--HHHHHHHHHHHHHHhcCCC-CC------CCccCC-C
Q 011730 155 FVALRADMDALPIQEAVEWEYKSK-VA-GKMHACGH-----D--AHVAMLIGAAKILKSREHL-LK------PAEEAG-N 217 (478)
Q Consensus 155 ~v~~~aHlDvVP~~~~~~~Pf~~~-~~-G~~~g~G~-----d--g~~a~~l~aa~~L~~~~~~-l~------~dEE~g-~ 217 (478)
+|+|+|||||||+++ +|.+. ++ |++||||+ | ++++++|++++.|++.+.. .. ++||.+ .
T Consensus 92 ~i~l~aH~D~vp~g~----~~~p~~~~~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~~~~~~v~~~~~~~EE~g~~ 167 (396)
T 3rza_A 92 KLYLTSHMDTVVPAI----NVKPIVKDDGYIYSDGTTILGADDKAGLAAMLEVLQVIKEQQIPHGQIQFVITVGEESGLI 167 (396)
T ss_dssp CEEEEEECCBCSSCS----SCCCEECTTSEEECCSSSCCCHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEESCGGGTSH
T ss_pred eEEEEEECCccCCCC----CcceEEecCCEEECCCccccCcccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccH
Confidence 999999999999764 45443 44 99999998 5 8889999999999876532 11 999976 4
Q ss_pred cHHHHHHcCCCCCCcEEEEEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhh
Q 011730 218 GAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLV 297 (478)
Q Consensus 218 G~~~l~~~g~~~~~D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~ 297 (478)
|++.+..+++ +.|+++..+++. +.+.+.... .|..+++|+++|+++|+|.|+.|+||+..+++++..|+..
T Consensus 168 Ga~~~~~~~~--~~~~~~~~~~~~--~~g~i~~~~----~g~~~~~i~v~G~~~Ha~~p~~g~nai~~~~~~i~~l~~~- 238 (396)
T 3rza_A 168 GAKELNSELL--DADFGYAIDASA--DVGTTVVGA----PTQMLISAKIIGKTAHASTPKEGVSAINIAAKAISRMKLG- 238 (396)
T ss_dssp HHHHCCGGGC--CCSEEEEEEESS--CTTCEEEEE----CEEEEEEEEEECBCCBTTSGGGSBCHHHHHHHHHHHSCCE-
T ss_pred hHhhhchhhc--ccceEEEEecCC--CcceEEEcC----CceEEEEEEEEeEecCCCCccccccHHHHHHHHHHhcccC-
Confidence 8888876543 468888888653 334444332 3678999999999999999999999999999999998753
Q ss_pred hcccCCCCCcEEEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCC
Q 011730 298 SREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPP 377 (478)
Q Consensus 298 ~~~~~~~~~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~ 377 (478)
... ...+++++.|+||.+.|+||++|++.+++|+.+.++.+++.++|++++++.+..+|+++++++.. .+++
T Consensus 239 --~~~--~~~~~~vg~i~gG~~~NvIP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~~a~~~g~~~~i~~~~----~~p~ 310 (396)
T 3rza_A 239 --QVD--EITTANIGKFHGGSATNIVADEVILEAEARSHDPERIKTQVKHMTDVFETTASELGGKAEVTVEQ----SYPG 310 (396)
T ss_dssp --EEE--TTEEEEEEEEEECSCTTBCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE----EECC
T ss_pred --CCC--CCceeeeeEEecCCCCcccCceEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEe----ccCC
Confidence 222 23678999999999999999999999999999999999999999999999888889999888763 4555
Q ss_pred c--cCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHHh-cccceEEecccCCCCCCCCCCCCCCcccCcCchHH
Q 011730 378 T--VNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEV-VPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPV 454 (478)
Q Consensus 378 ~--~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~-iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~ 454 (478)
+ .+|+++++.+++++++ +|.+.. ...+++++|+++|... +|++++ |++. ..+|+++|++++++|..
T Consensus 311 ~~~~~d~~l~~~~~~~~~~-~g~~~~--~~~~~g~tD~~~~~~~giP~~~~--g~g~------~~~H~~~E~v~~~~l~~ 379 (396)
T 3rza_A 311 FKINDNEAVVKIAQESARN-LGLSAN--TIISGGGSDGSIINTFGIPSVIL--GVGY------EKIHTTNERMPIKSLNL 379 (396)
T ss_dssp EECCTTSHHHHHHHHHHHH-TTCCCC--EEECSSCCHHHHHGGGTCCEEEE--ECCC------BSTTSTTCEEEHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHH-cCCCce--ecccceeccHHHHhhCCCcEEEE--CCCC------CCCCCCcceeEHHHHHH
Confidence 5 4678999999999998 586542 3466789999999875 999865 4443 25999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 011730 455 GAAVHATIAERFLNEY 470 (478)
Q Consensus 455 ~~~i~a~~~~~ll~~~ 470 (478)
++++|+.++.+|.+++
T Consensus 380 ~~~~~~~~~~~l~~~~ 395 (396)
T 3rza_A 380 LASQVLEIIKIVARQS 395 (396)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987643
No 11
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}
Probab=100.00 E-value=2.1e-46 Score=394.46 Aligned_cols=369 Identities=10% Similarity=0.018 Sum_probs=289.5
Q ss_pred HHHHHHHhcCcchH-HHHHHHHHHhhcCCCCCcc----------hHHHHHHHHHHHHhCCCc---EEec--cC-CceEEE
Q 011730 84 SKEVMELARRPETV-DWLKSVRRTIHQNPELAFQ----------EFETSRLLRAELDRMEIG---YKYP--LA-KTGIRA 146 (478)
Q Consensus 84 ~~~~~~~~~~~~~~-~~l~~l~~~L~~iPs~s~~----------E~~~a~~l~~~L~~~G~~---v~~~--~~-~~~via 146 (478)
.+++.+++ ++++ +++++++++|++|||+|++ |.++++++.++|+++||+ ++.. .+ ++|+++
T Consensus 5 ~~~~~~~~--~~~~~~~~~~~l~~lv~ips~s~~~~~~~~~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~v~a 82 (472)
T 3pfe_A 5 PQGLYDYI--CQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFM 82 (472)
T ss_dssp HHHHHHHH--HHHHHHTHHHHHHHHHTCCCBCGGGCTTHHHHCHHHHHHHHHHHHHHHTCCTTCEEEEECCTTSCCEEEE
T ss_pred HHHHHHHH--HHhhHHHHHHHHHHHhCCCCcCCCccccccccchHHHHHHHHHHHHHHcCCCCcceEEEecCCCCcEEEE
Confidence 46788888 8887 8999999999999999975 899999999999999985 4432 23 579999
Q ss_pred EEcCCCCcEEEEEEccccccCCC-CC--CCCcccc-cCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC-------CC
Q 011730 147 WVGTGGPPFVALRADMDALPIQE-AV--EWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK-------PA 212 (478)
Q Consensus 147 ~~g~~~~p~v~~~aHlDvVP~~~-~~--~~Pf~~~-~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~-------~d 212 (478)
+++++++|+|+|++||||||+++ |+ ..||++. ++|++||||+ | ++++++|+|++.|++.+..+. ++
T Consensus 83 ~~~g~~~~~i~l~~H~D~vp~~~~w~~~~~Pf~~~~~~g~~~grG~~D~K~~~a~~l~a~~~l~~~~~~~~~v~~~~~~~ 162 (472)
T 3pfe_A 83 EIPGQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEAC 162 (472)
T ss_dssp EECCSEEEEEEEEEECCBCCCCSCCCTTCBTTBCEEETTEEESTTCCCCCHHHHHHHHHHHHHHHTTCCCEEEEEEEESC
T ss_pred EEcCCCCCeEEEEccccCCCCcCCCCcCCCCCceEEECCEEEEeCcccCcHHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Confidence 99544468999999999999854 47 7899985 6899999999 6 999999999999998765432 99
Q ss_pred ccCC-CcHHHHHHcC--CCCCCcEEEEEecCCCCCcceEEeecccccceeeEEE--EEEEeecCCCCCCCCC-CCHHHHH
Q 011730 213 EEAG-NGAKRMMADG--ALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFH--AVISGKKGGAANPHRS-VDPVLAA 286 (478)
Q Consensus 213 EE~g-~G~~~l~~~g--~~~~~D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~--i~v~G~~~Has~p~~g-~NAi~~~ 286 (478)
||.+ .|++.+++++ .+.++|++++.|++.. ..+...+..|.+ |..+++ |+++|+++|+|.|+.+ .|||..+
T Consensus 163 EE~g~~g~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~i~~g~~--G~~~~~~~v~~~G~~~H~~~~~~~~~nai~~~ 239 (472)
T 3pfe_A 163 EESGSYDLPFYIELLKERIGKPSLVICLDSGAG-NYEQLWMTTSLR--GNLVGKLTVELINEGVHSGSASGIVADSFRVA 239 (472)
T ss_dssp GGGTSTTHHHHHHHHHHHHCCCSEEEEECCBCS-CSSSCEEEEEEC--EEEEEEEEEESCSSCBCHHHHTTTSCCHHHHH
T ss_pred CCCCChhHHHHHHHhHhhccCCCEEEEeCCCcC-CCCCeeEEEeee--EEEEEEEEEEeCCCCcccCCCCCCCCCHHHHH
Confidence 9987 5999998875 3446899999996532 112222333433 445544 6668999999997754 5999999
Q ss_pred HHHHHHHHhhh-hcc--------c-----------------------------CCCC------------CcEEEEEEEeC
Q 011730 287 SAAVISLQGLV-SRE--------A-----------------------------NPLD------------SQVVSVTYFNG 316 (478)
Q Consensus 287 ~~~i~~l~~l~-~~~--------~-----------------------------~~~~------------~~~~~v~~i~g 316 (478)
+++|.+|+.+. .+. . .++. ..+++|+.|+|
T Consensus 240 ~~~i~~l~~~~~~~i~i~gf~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~i~~i~g 319 (472)
T 3pfe_A 240 RQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADG 319 (472)
T ss_dssp HHHHHHHBCTTTCCBCCGGGCCCCCHHHHHHHHHHHHHHGGGGTTTSCCCTTCCCSCSCHHHHHHHHHTSCEEEEEEEES
T ss_pred HHHHHHhhCcCCCCEeCCCcccCCCCccHHHHHHHhhhccHHHHHhcccccCccccccchHHHHHHhhcCCcEEEeeeec
Confidence 99999998762 100 0 0110 46899999999
Q ss_pred C----CccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCC-CCCCcc---CCHHHHHHH
Q 011730 317 G----DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNT-VYPPTV---NDEDMYEHV 388 (478)
Q Consensus 317 G----~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~-~~~~~~---~d~~l~~~~ 388 (478)
| .+.|+||++|++.+++|+.+.++.+++.++|++++++.+ .++++++++.. . .++++. +++.+++.+
T Consensus 320 G~~~g~a~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~-~~g~~v~v~~~----~~~~pp~~~~~n~~~l~~~~ 394 (472)
T 3pfe_A 320 FPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNP-PYNAKVDFKIQ----NGGSKGWNAPLLSDWLAKAA 394 (472)
T ss_dssp CCCTTTCCSCBCSEEEEEEEEEECTTCCHHHHHHHHHHHHHSSC-GGGCEEEEEEC----SCCBCCEECCCCCHHHHHHH
T ss_pred CcCCCCCCCEeCCccEEEEEeecCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEEec----CCCCCcccCCCCChHHHHHH
Confidence 7 689999999999999999999999999999999998765 56788888764 2 344544 345588999
Q ss_pred HHHHHHhcCCCcccccCCCCccch-H-HHHHHhcccc-eEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHH
Q 011730 389 KKVAIDLLGPMNYRVVPPMMGAED-F-SFYSEVVPAA-FYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAER 465 (478)
Q Consensus 389 ~~~~~~~~G~~~~~~~~~~~g~tD-~-~~~~~~iP~~-~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ 465 (478)
++++++++|.++. ....+++| | .+|...+|.+ ++++|++++. ..+|+|+|+++++++.+++++|++++.+
T Consensus 395 ~~a~~~~~G~~~~---~~~~gg~d~f~~~~~~~~Pg~p~v~~G~g~~~----~~~H~p~E~i~~~~l~~g~~~l~~~l~~ 467 (472)
T 3pfe_A 395 SEASMTYYDKPAA---YMGEGGTIPFMSMLGEQFPKAQFMITGVLGPH----SNAHGPNEFLHLDMVKKLTSCVSYVLYS 467 (472)
T ss_dssp HHHHHHHHSSCCE---EEEESSCCHHHHHHHHHCTTCEEEEECCBCTT----CCTTSTTCEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCce---eccCCCchhhHHHHHHHcCCCCEEEecCCCCC----CCCcCCCcceeHHHHHHHHHHHHHHHHH
Confidence 9999998897654 22345666 5 5677778876 7778876542 4699999999999999999999999998
Q ss_pred HHhh
Q 011730 466 FLNE 469 (478)
Q Consensus 466 ll~~ 469 (478)
|.++
T Consensus 468 la~~ 471 (472)
T 3pfe_A 468 FSQK 471 (472)
T ss_dssp HHHC
T ss_pred Hhhc
Confidence 8654
No 12
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}
Probab=100.00 E-value=1.9e-45 Score=375.63 Aligned_cols=338 Identities=18% Similarity=0.211 Sum_probs=279.7
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccC-------CceEEEEEcC--CCCcEEEEEEccccccC
Q 011730 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA-------KTGIRAWVGT--GGPPFVALRADMDALPI 167 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~-------~~~via~~g~--~~~p~v~~~aHlDvVP~ 167 (478)
.+++++++++|++|||+|++|.++++||.++|+++|++++.... ++|+++++.+ +++|+|+|++||||||+
T Consensus 5 ~~~~~~~l~~l~~~ps~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~nv~a~~~g~~~~~~~v~l~aH~D~vp~ 84 (373)
T 3gb0_A 5 QERLVNEFMELVQVDSETKFEAEICKVLTKKFTDLGVEVFEDDTMAVTGHGAGNLICTLPATKDGVDTIYFTSHMDTVVP 84 (373)
T ss_dssp HHHHHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTTCEEEECSCHHHHCCSSCCEEEEECCSSTTCCCEEEEEECCBCSS
T ss_pred HHHHHHHHHHHhcccCCCccHHHHHHHHHHHHHHCCCEEEEeccccccCCCceeEEEEecCCCCCCCEEEEEEECcccCC
Confidence 67899999999999999999999999999999999999877542 4799999943 25799999999999997
Q ss_pred CCCCCCCcccc-cCCeEEeCcc-----h--HHHHHHHHHHHHHHhcCCC-CC------CCccCC-CcHHHHHHcCCCCCC
Q 011730 168 QEAVEWEYKSK-VAGKMHACGH-----D--AHVAMLIGAAKILKSREHL-LK------PAEEAG-NGAKRMMADGALEDV 231 (478)
Q Consensus 168 ~~~~~~Pf~~~-~~G~~~g~G~-----d--g~~a~~l~aa~~L~~~~~~-l~------~dEE~g-~G~~~l~~~g~~~~~ 231 (478)
++ +|.+. ++|++||||+ | ++++++|.+++.|++.+.. .+ ++||.+ .|++.+..+++ ++
T Consensus 85 ~~----~~~p~~~~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~~~~~~v~~~~~~~EE~g~~Ga~~~~~~~~--~~ 158 (373)
T 3gb0_A 85 GN----GIKPSIKDGYIVSDGTTILGADDKAGLASMFEAIRVLKEKNIPHGTIEFIITVGEESGLVGAKALDRERI--TA 158 (373)
T ss_dssp CS----SCCCEEETTEEECCSSSCCCHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEESCGGGTSHHHHHSCGGGC--CC
T ss_pred CC----CcCcEEECCEEECCCccccCcccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEeccccCchhhhhhCHHhc--CC
Confidence 54 45543 5799999997 5 7889999999999876531 11 999976 48888865543 57
Q ss_pred cEEEEEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEE
Q 011730 232 EAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-NPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVS 310 (478)
Q Consensus 232 D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has-~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~ 310 (478)
|+++..+++. +.+.+.... .|..+++|+++|+++|++ .|+.|+||+..+++++..|+.. ... ...+++
T Consensus 159 ~~~~~~~~~~--~~g~i~~~~----~g~~~~~i~~~G~~~Ha~~~p~~g~nai~~~~~~i~~l~~~---~~~--~~~~~~ 227 (373)
T 3gb0_A 159 KYGYALDSDG--KVGEIVVAA----PTQAKVNAIIRGKTAHAGVAPEKGVSAITIAAKAIAKMPLG---RID--SETTAN 227 (373)
T ss_dssp SEEEEEEECS--CTTEEEEEE----CEEEEEEEEEECBCCBTTTCGGGSBCHHHHHHHHHTTSCCE---EEE--TTEEEE
T ss_pred CEEEEEcCCC--CCCeEEEcC----CCcEEEEEEEEeEecCCCCChhhCcCHHHHHHHHHHhcccc---cCC--Cccccc
Confidence 8888888643 334444332 367899999999999999 7999999999999999888752 222 236789
Q ss_pred EEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCc--cCCHHHHHHH
Q 011730 311 VTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPT--VNDEDMYEHV 388 (478)
Q Consensus 311 v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~--~~d~~l~~~~ 388 (478)
++.|+||.+.|+||++|++.+++|+.+.++.+++.+++++++++.+..+|+++++++.. .++++ .+|+++++.+
T Consensus 228 vg~i~gG~~~Nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~g~~~~i~~~~----~~~~~~~~~~~~l~~~~ 303 (373)
T 3gb0_A 228 IGRFEGGTQTNIVCDHVQIFAEARSLINEKMEAQVAKMKEAFETTAKEMGGHADVEVNV----MYPGFKFADGDHVVEVA 303 (373)
T ss_dssp EEEEEECSCTTBCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE----EECCEECCTTCHHHHHH
T ss_pred eeEEecCcccccccceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEec----ccCCcccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999988899999888763 34554 4688999999
Q ss_pred HHHHHHhcCCCcccccCCCCccchHHHHHHh-cccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHH
Q 011730 389 KKVAIDLLGPMNYRVVPPMMGAEDFSFYSEV-VPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERF 466 (478)
Q Consensus 389 ~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~-iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~l 466 (478)
++++++ +|.+.. ...+++++|+++|+.. +|++++ |++. ..+|+++|+++++++.+++++|+.++.+|
T Consensus 304 ~~~~~~-~g~~~~--~~~~~g~~D~~~~~~~gip~~~~--g~~~------~~~H~~~E~i~~~~l~~~~~~~~~~l~~l 371 (373)
T 3gb0_A 304 KRAAEK-IGRTPS--LHQSGGGSDANVIAGHGIPTVNL--AVGY------EEIHTTNEKIPVEELAKTAELVVAIIEEV 371 (373)
T ss_dssp HHHHHH-TTCCCE--EEECSSCCHHHHHHHTTCCEEEE--ECCC------BSTTSTTCEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hCCCce--EecccCcchHHHHHhCCCCEEEe--cCCC------CcCcCCceEEEHHHHHHHHHHHHHHHHHh
Confidence 999998 586542 3566889999999885 999864 4443 25999999999999999999999999887
No 13
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.1e-45 Score=376.88 Aligned_cols=337 Identities=16% Similarity=0.172 Sum_probs=266.3
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCc-EEeccCCceEEEEEcCCCCcEEEEEEccccccCCCCCCCC
Q 011730 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWE 174 (478)
Q Consensus 96 ~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~-v~~~~~~~~via~~g~~~~p~v~~~aHlDvVP~~~~~~~P 174 (478)
..+++++++++|++|||+|++|.++++||.++|+++|++ ++....++|++++++++++|+|+|++||||||+++ |
T Consensus 11 ~~~~~~~~~~~l~~~ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~a~~~~~~~~~v~l~~H~D~vp~~~----~ 86 (369)
T 3tx8_A 11 LLGDPIVLTQRLVDIPSPSGQEKQIADEIEDALRNLNLPGVEVFRFNNNVLARTNRGLASRVMLAGHIDTVPIAD----N 86 (369)
T ss_dssp CCSCHHHHHHHHHSSCCBTTCTHHHHHHHHHHHHTTTCTTCEEEEETTEEEEECCCCCSCEEEEEEECCBSCCCS----C
T ss_pred cHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCCCCcEEeccCCcEEEEecCCCCCeEEEEcccCccCCCC----C
Confidence 356789999999999999999999999999999999873 44333467999998655579999999999999875 4
Q ss_pred cccc-cCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC--------CCccCC---CcHHHHHHcCC-CCCCcEEEEEe
Q 011730 175 YKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK--------PAEEAG---NGAKRMMADGA-LEDVEAIFAVH 238 (478)
Q Consensus 175 f~~~-~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~--------~dEE~g---~G~~~l~~~g~-~~~~D~~i~~~ 238 (478)
|... ++|++||||+ | ++++++|+|++.|++. ..++ ++||.+ .|++.+++.+. ..++|+++..+
T Consensus 87 ~~~~~~~g~~~g~G~~D~K~~~a~~l~a~~~l~~~-~~~~~~v~~~~~~~EE~g~~~~G~~~~~~~~~~~~~~~~~i~~e 165 (369)
T 3tx8_A 87 LPSRVEDGIMYGCGTVDMKSGLAVYLHTFATLATS-TELKHDLTLIAYECEEVADHLNGLGHIRDEHPEWLAADLALLGE 165 (369)
T ss_dssp CSCEECSSEEESSSTTTTHHHHHHHHHHHHHHTSC-TTCCSEEEEEEECCCSSCTTSCHHHHHHHHCGGGGCCSEEEECC
T ss_pred CCCeEECCEEEcCCcccchHHHHHHHHHHHHHHhh-cCCCccEEEEEEeccccCcccccHHHHHHhcccccCCCEEEEeC
Confidence 4443 4799999999 6 8999999999999864 2332 999987 48999988752 12578999888
Q ss_pred cCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhccc--CCC-CCcEEEEEEEe
Q 011730 239 VSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREA--NPL-DSQVVSVTYFN 315 (478)
Q Consensus 239 ~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~--~~~-~~~~~~v~~i~ 315 (478)
|+. +.+.. + .+|..+++|+++|+++|+|.|+.|+||+..+++++..|+++..+.. ++. ...+++++.|+
T Consensus 166 p~~----~~i~~--~--~~G~~~~~i~v~G~~~Ha~~p~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~vg~i~ 237 (369)
T 3tx8_A 166 PTG----GWIEA--G--CQGNLRIKVTAHGVRAHSARSWLGDNAMHKLSPIISKVAAYKAAEVNIDGLTYREGLNIVFCE 237 (369)
T ss_dssp CCT----TCEEE--S--BCEEEEEEEEEECBCCBTTSGGGSBCTGGGGHHHHHHHHHCCCCEEEETTEEEECEEEEEEEE
T ss_pred CCC----Cceee--e--cceEEEEEEEEeeeccccCCCCcCcCHHHHHHHHHHHHHhhcccccccCCcccCceEEEEEEE
Confidence 764 33322 2 3478999999999999999999999999999999999998754322 121 24689999999
Q ss_pred CCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHh
Q 011730 316 GGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDL 395 (478)
Q Consensus 316 gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 395 (478)
||.+.|+||++|++.+++|++|.++.+++.++|++++++.+ .++++++++... +.+++ ..++++++.+.++
T Consensus 238 gG~~~NvIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~~-~~g~~~~~~~~~---~~~~~-~~~~~~~~~~~~~---- 308 (369)
T 3tx8_A 238 SGVANNVIPDLAWMNLNFRFAPNRDLNEAIEHVVETLELDG-QDGIEWAVEDGA---GGALP-GLGQQVTSGLIDA---- 308 (369)
T ss_dssp ECSBTTBCCSEEEEEEEEEECTTSCHHHHHHHHHHHTTTTT-STTEEEEEEEEE---CCBCC-CTTSHHHHHHHHH----
T ss_pred CCCCCccccCcEEEEEEEecCCCCCHHHHHHHHHHHHHhcc-cCCeEEEEEecC---CCCCC-CCCCHHHHHHHHH----
Confidence 99999999999999999999999999999999999998766 557777764221 33333 3456666666554
Q ss_pred cCCCcccccCCCCccchHHHHHHh-cccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHH
Q 011730 396 LGPMNYRVVPPMMGAEDFSFYSEV-VPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAE 464 (478)
Q Consensus 396 ~G~~~~~~~~~~~g~tD~~~~~~~-iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~ 464 (478)
+|... +....+++|+++|... +|++. +|++.. ..+|++||++++++|.+++++|++++.
T Consensus 309 ~g~~~---~~~~~ggtD~~~~~~~giP~~~--~Gpg~~-----~~~H~~~E~v~~~~l~~~~~~l~~~l~ 368 (369)
T 3tx8_A 309 VGREK---IRAKFGWTDVSRFSAMGIPALN--FGAGDP-----SFAHKRDEQCPVEQITDVAAILKQYLS 368 (369)
T ss_dssp HCGGG---EEECCSCCTHHHHHTTTCCEEE--ECSSCS-----SSSSCTTCEEEHHHHHHHHHHHHHHHH
T ss_pred cCCCC---CcccccccchHHHhhCCCCEEE--ECCCCh-----hhCCCCCcEEEHHHHHHHHHHHHHHhh
Confidence 36421 1345688999999875 99874 566542 369999999999999999999999875
No 14
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A
Probab=100.00 E-value=3.3e-45 Score=373.51 Aligned_cols=336 Identities=15% Similarity=0.053 Sum_probs=267.1
Q ss_pred cchHHHHHHHHHHhhcCCCCC--c---chHHHHHHHHHHHHhCCCcEEecc---CCceEEEEEcCCCCcEEEEEEccccc
Q 011730 94 PETVDWLKSVRRTIHQNPELA--F---QEFETSRLLRAELDRMEIGYKYPL---AKTGIRAWVGTGGPPFVALRADMDAL 165 (478)
Q Consensus 94 ~~~~~~l~~l~~~L~~iPs~s--~---~E~~~a~~l~~~L~~~G~~v~~~~---~~~~via~~g~~~~p~v~~~aHlDvV 165 (478)
++.++++++++++|++|||+| + +|.++++||.++|+ ||+++... +++|+++ +.+. |+|+|++|||||
T Consensus 5 ~~~~~~~~~~l~~l~~ips~s~~~~~~~e~~~~~~l~~~l~--G~~~~~~~~~~~~~~~~a-~~g~--~~i~l~~H~D~v 79 (369)
T 2f7v_A 5 TDLLASTLEHLETLVSFDTRNPPRAIAAEGGIFDYLRAQLP--GFQVEVIDHGDGAVSLYA-VRGT--PKYLFNVHLDTV 79 (369)
T ss_dssp CHHHHHHHHHHHHHHHSCCBTTTTCCCSSSHHHHHHHTTCT--TCEEEEEECSTTCEEEEE-EESC--CSEEEEEECCBC
T ss_pred hhhhHHHHHHHHHHhCCCCcCCCCCCccHHHHHHHHHHHhC--CCceEEEEcCCCceEEEE-EcCC--CeEEEEeeeccc
Confidence 677889999999999999999 8 89999999999999 99987643 4679999 8533 889999999999
Q ss_pred cCCC-CCCCCcccc-cCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC----CCccC-C-CcHHHHHHcCCCCCCcEE
Q 011730 166 PIQE-AVEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK----PAEEA-G-NGAKRMMADGALEDVEAI 234 (478)
Q Consensus 166 P~~~-~~~~Pf~~~-~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~----~dEE~-g-~G~~~l~~~g~~~~~D~~ 234 (478)
|.++ |+.+||++. .+|++||||+ | ++++++|.+++. ....+. ++||. + .|++.+++.+. ++|++
T Consensus 80 p~~~~w~~~pf~~~~~~g~l~grG~~D~k~g~a~~l~a~~~---~~~~v~~~~~~~EE~~g~~G~~~~~~~~~--~~d~~ 154 (369)
T 2f7v_A 80 PDSPHWSADPHVMRRTEDRVIGLGVCDIKGAAAALVAAANA---GDGDAAFLFSSDEEANDPRCIAAFLARGL--PYDAV 154 (369)
T ss_dssp CCCSSCSSCTTSCEECSSEEECTTTTTTHHHHHHHHHHHTT---CCCCEEEEEESCTTSSSCCHHHHHHTTCC--CCSEE
T ss_pred CCCCCCCCCCCCcEEECCEEEecccccccHHHHHHHHHHhc---CCCCEEEEEEeCcccCCCcCHHHHHhcCC--CCCEE
Confidence 9986 889999985 5899999998 3 677777777655 222222 99998 5 59999998875 68999
Q ss_pred EEEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCC-CCCCHHHHHHHHHHHHHhhhhcc----cCCCCCcEE
Q 011730 235 FAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPH-RSVDPVLAASAAVISLQGLVSRE----ANPLDSQVV 309 (478)
Q Consensus 235 i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~-~g~NAi~~~~~~i~~l~~l~~~~----~~~~~~~~~ 309 (478)
++.+++. +.+. ...+|..+++|+++|+++|+|.|+ .|.||+..+++++..|+.+..+. ..+....++
T Consensus 155 i~~e~~~----~~i~----~~~~g~~~~~i~v~G~~~Ha~~p~~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 226 (369)
T 2f7v_A 155 LVAEPTM----SEAV----LAHRGISSVLMRFAGRAGHASGKQDPAASALHQAMRWGGKALDHVESLAHARFGGLTGLRF 226 (369)
T ss_dssp EECCCST----TCBB----CCBCCEEEEEEEEECCCC------CTTSCHHHHHHHHHHHHHHHHHHTTTCEETTEESCEE
T ss_pred EECCCCC----Ccce----eecCceEEEEEEEeeeCcccCCCCcCCCCHHHHHHHHHHHHHhhhhhhcccccCcccCCce
Confidence 9988753 2221 223478899999999999999999 99999999999999998875332 122111689
Q ss_pred EEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCC-HHHHHHH
Q 011730 310 SVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVND-EDMYEHV 388 (478)
Q Consensus 310 ~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d-~~l~~~~ 388 (478)
+++.|+||.+.|+||++|++.+++|+++.++.+++.++|++++++. ++++++++.. ..++++.++ +++++.+
T Consensus 227 ~vg~i~gG~~~NviP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~l~~~~ 299 (369)
T 2f7v_A 227 NIGRVDGGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGFADPA----AAHFEETFRG---PSLPSGDIARAEERRLA 299 (369)
T ss_dssp EEEEEEECSSTTSCCSEEEEEEEEECCTTCCHHHHHHHHHHTCSSC----CSEEEEEEEE---CCBSCSSHHHHHHHHHH
T ss_pred EEEEeecCCCCCcCCCceEEEEEEeeCCCCCHHHHHHHHHHHHHHh----cCceEEEecc---CCCCccCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999998887643 4677776542 134565556 8899999
Q ss_pred HHHHHHhcCCCcccccCCCCccchHHHHHHh-cccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHH
Q 011730 389 KKVAIDLLGPMNYRVVPPMMGAEDFSFYSEV-VPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAE 464 (478)
Q Consensus 389 ~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~-iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~ 464 (478)
++++++.+|.++. ..+.+++|+++|.+. +|++ .+|++.. ..+|++||++++++|.+++++|+.++.
T Consensus 300 ~~a~~~~~g~~~~---~~~~g~~D~~~~~~~g~p~v--~~Gpg~~-----~~~H~~~E~~~~~~l~~~~~~~~~~~~ 366 (369)
T 2f7v_A 300 ARDVADALDLPIG---NAVDFWTEASLFSAGGYTAL--VYGPGDI-----AQAHTADEFVTLAQLQRYVESVNRIIN 366 (369)
T ss_dssp HHHHHHHTTCCBC---CCBSSCCTHHHHHHTTCCEE--ECCSSCG-----GGTTCTTCEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCC---ccccccCcHHHHhhCCCCEE--EECCCCc-----cccCCCCceEEHHHHHHHHHHHHHHHH
Confidence 9999998887653 457899999999886 9987 3566432 469999999999999999999999875
No 15
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=8.1e-46 Score=376.22 Aligned_cols=331 Identities=15% Similarity=0.129 Sum_probs=261.8
Q ss_pred cchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEcC-C-CCcEEEEEEccccccCCC-C
Q 011730 94 PETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT-G-GPPFVALRADMDALPIQE-A 170 (478)
Q Consensus 94 ~~~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~-~-~~p~v~~~aHlDvVP~~~-~ 170 (478)
+++.+++++++++|++|||+|++|.++++||.++|+++|++++.. .+|+++++.+ + ++|+|+|++||||||.++ |
T Consensus 7 ~~~~~~~~~~~~~l~~~ps~s~~e~~~~~~l~~~l~~~g~~~~~~--~~nv~a~~~g~~~~~~~i~l~aH~D~vp~~~~w 84 (356)
T 3ct9_A 7 PTMTAEAVSLLKSLISIPSISREETQAADFLQNYIEAEGMQTGRK--GNNVWCLSPMFDLKKPTILLNSHIDTVKPVNGW 84 (356)
T ss_dssp HHHHHHHHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTTCCEEEE--TTEEEEECSSCCTTSCEEEEEEECCBCCCC---
T ss_pred hHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHCCCeEEEE--eeeEEEEEecCCCCCCeEEEEccccccCCCCCC
Confidence 455788999999999999999999999999999999999998775 7899999943 3 468999999999999875 6
Q ss_pred CCCCcccc-cCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC------CCccC-C-CcHHHHHHcCCCCCCcEEEEEe
Q 011730 171 VEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK------PAEEA-G-NGAKRMMADGALEDVEAIFAVH 238 (478)
Q Consensus 171 ~~~Pf~~~-~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~------~dEE~-g-~G~~~l~~~g~~~~~D~~i~~~ 238 (478)
+..||++. ++|++||||+ | ++++++|.+++.|++.+.+.+ ++||. + .|++.+++.+ .++|+++..+
T Consensus 85 ~~~p~~~~~~~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~~~~~v~~~~~~~EE~~g~~G~~~~~~~~--~~~d~~i~~e 162 (356)
T 3ct9_A 85 RKDPFTPREENGKLYGLGSNDAGASVVSLLQVFLQLCRTSQNYNLIYLASCEEEVSGKEGIESVLPGL--PPVSFAIVGE 162 (356)
T ss_dssp ----CCCEECSSEEESTTTTTTHHHHHHHHHHHHHHTTSCCSSEEEEEEECCGGGTCTTTHHHHGGGS--CCCSEEEECC
T ss_pred CCCCCccEEECCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCEEEEEEeCcccCCccCHHHHHhhC--CCCCEEEEcC
Confidence 78899986 4799999999 6 678999999999987652211 99998 5 6999999886 3689999888
Q ss_pred cCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCC-CCCcEEEEEEEeCC
Q 011730 239 VSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANP-LDSQVVSVTYFNGG 317 (478)
Q Consensus 239 ~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~-~~~~~~~v~~i~gG 317 (478)
|+.. .+.. + .+|..+++|+++|+++|+|.| .|+||+..+++++.+|+.+..+..++ .+..+++++.|+||
T Consensus 163 p~~~----~i~~--~--~~G~~~~~i~~~G~~~Ha~~p-~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~vg~i~gG 233 (356)
T 3ct9_A 163 PTEM----QPAI--A--EKGLMVLDVTATGKAGHAARD-EGDNAIYKVLNDIAWFRDYRFEKESPLLGPVKMSVTVINAG 233 (356)
T ss_dssp SBTT----CCEE--E--ECCCEEEEEEEECBCCBTTSS-CCBCTTGGGHHHHHHHHHCCCSCCBTTTBSCEEEEEEEEEC
T ss_pred CCCc----eEEE--e--eeEEEEEEEEEECCCcccCCC-CCCCHHHHHHHHHHHHHhhhcccccccCCCCcEEeeEEecC
Confidence 7642 2221 1 236789999999999999999 99999999999999999875433333 35678999999999
Q ss_pred CccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCC--ccCCHHHHHHHHHHHHHh
Q 011730 318 DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPP--TVNDEDMYEHVKKVAIDL 395 (478)
Q Consensus 318 ~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~ 395 (478)
.+.|+||++|++.+++|+++.++.+++.++|+++++. +++++. . .+++ +.+|+++++.+++++++
T Consensus 234 ~~~NviP~~a~~~~~iR~~~~~~~~~~~~~i~~~~~~-------~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~- 300 (356)
T 3ct9_A 234 TQHNVVPDKCTFVVDIRSNELYSNEDLFAEIRKHIAC-------DAKARS-F----RLNSSRIDEKHPFVQKAVKMGRI- 300 (356)
T ss_dssp SSTTBCCSEEEEEEEEECCTTCCHHHHHHHHHHHCCS-------EEEESC-S----CSCCEECCTTSHHHHHHHHTTCC-
T ss_pred CcCCcCCCceEEEEEEeeCCCCCHHHHHHHHHHHhhC-------eEEEee-c----cCCCCCCCCCCHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999888653 333321 2 2333 34677888887766532
Q ss_pred cCCCcccccCCCCccchHHHHHHhcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHH
Q 011730 396 LGPMNYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFL 467 (478)
Q Consensus 396 ~G~~~~~~~~~~~g~tD~~~~~~~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll 467 (478)
+ ..+++++|++. ..+|++. +|++.. ..+|++||+++++++.+++++|+.++.+||
T Consensus 301 ----~----~~~~g~tD~~~--~~~p~v~--~G~g~~-----~~~H~~~E~i~~~~l~~~~~~~~~~~~~~~ 355 (356)
T 3ct9_A 301 ----P----FGSPTLSDQAL--MSFASVK--IGPGRS-----SRSHTAEEYIMLKEIEEAIGIYLDLLDGLK 355 (356)
T ss_dssp ----C----EEECSCCGGGG--CCSCEEE--CCSSBG-----GGTTSTTCEEEHHHHHHHHHHHHHHHTTCC
T ss_pred ----C----cccccccchhh--cCCCEEE--ECCCcc-----ccCcCCCcEEEHHHHHHHHHHHHHHHHHhh
Confidence 1 23578999994 3688753 566532 359999999999999999999999987653
No 16
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*
Probab=100.00 E-value=3e-44 Score=378.60 Aligned_cols=366 Identities=13% Similarity=0.077 Sum_probs=292.4
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhhcCCCCCcch------HHHHHHHHHHHHhCCCcEEecc--------CC-----ceE
Q 011730 84 SKEVMELARRPETVDWLKSVRRTIHQNPELAFQE------FETSRLLRAELDRMEIGYKYPL--------AK-----TGI 144 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~l~~~L~~iPs~s~~E------~~~a~~l~~~L~~~G~~v~~~~--------~~-----~~v 144 (478)
.+++.+++ +...+++++++++|++|||+|++| .++++||.++|+++|++++... +. +|+
T Consensus 8 ~~~~~~~~--~~~~~~~~~~l~~l~~~ps~s~~e~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~v 85 (479)
T 2zog_A 8 LKAVFQYI--DENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLPPIL 85 (479)
T ss_dssp HHHHHHHH--HHTHHHHHHHHHHHHHSCCBTTCGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCEEECTTSCEEECCCEE
T ss_pred HHHHHHHH--HHhHHHHHHHHHHHhcCCCccCCcccchHHHHHHHHHHHHHHHcCCeEEEeeccccccCCCcccCCCCEE
Confidence 46788888 888999999999999999999876 7899999999999999987643 22 799
Q ss_pred EEEEcCC-CCcEEEEEEccccccCCC---CCCCCcccc-cCCeEEeCc-ch--HHHHHHHHHHHHHHhcCCCCC------
Q 011730 145 RAWVGTG-GPPFVALRADMDALPIQE---AVEWEYKSK-VAGKMHACG-HD--AHVAMLIGAAKILKSREHLLK------ 210 (478)
Q Consensus 145 ia~~g~~-~~p~v~~~aHlDvVP~~~---~~~~Pf~~~-~~G~~~g~G-~d--g~~a~~l~aa~~L~~~~~~l~------ 210 (478)
+++++++ ++|+|+|++||||||.++ |+..||.+. .+|++|||| +| ++++++|.|++.|++.+.+++
T Consensus 86 ~a~~~~~~~~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~~~g~l~grGa~D~K~g~a~~l~a~~~l~~~~~~~~~~v~~~ 165 (479)
T 2zog_A 86 LGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLRFC 165 (479)
T ss_dssp EEEECCCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEE
T ss_pred EEEecCCCCCCeEEEEEecCCCCCCccccCcCCCCcceeECCEEEeeccccChHHHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 9999654 469999999999999864 577799985 689999999 46 899999999999998765543
Q ss_pred --CCccCC-CcHHHHHHcC---CCCCCcEEEEEecCCCCC-cceEEeecccccceeeEEEEEEEeec--CCCCCCCCCCC
Q 011730 211 --PAEEAG-NGAKRMMADG---ALEDVEAIFAVHVSHEHP-TGVIGSRPGPLLAGCGFFHAVISGKK--GGAANPHRSVD 281 (478)
Q Consensus 211 --~dEE~g-~G~~~l~~~g---~~~~~D~~i~~~~~~~~~-~g~i~~~~g~~~~g~~~~~i~v~G~~--~Has~p~~g~N 281 (478)
++||.+ .|++.+++++ ++.++|++++.|+....+ .+.+.. + .+|..+++|+++|++ +|||.+ |.|
T Consensus 166 ~~~~EE~g~~Ga~~~~~~~~~~~~~~~d~~i~~e~~~~~~~~~~i~~--~--~~G~~~~~i~v~G~~~~~Hs~~~--g~~ 239 (479)
T 2zog_A 166 LEGMEESGSEGLDELIFAQKDKFFKDVDYVCISDNYWLGKNKPCITY--G--LRGICYFFIEVECSDKDLHSGVY--GGS 239 (479)
T ss_dssp EESCGGGTCTTHHHHHHHTTTTTTTTCCEEEECCCBCSSSSSCEEEE--E--ECEEEEEEEEEECCSSCEEHHHH--TTT
T ss_pred EecccccCCccHHHHHHhhhhhhcccCCEEEEeCCCcCCCCCeEEEE--e--cceEEEEEEEEEeCCCCCccCCC--CCC
Confidence 999976 5999999875 455789999998643111 223322 2 347889999999999 999985 789
Q ss_pred HHHHHHHHHHHHHhhhhccc-----------C-------------CC---------------------------CCcEEE
Q 011730 282 PVLAASAAVISLQGLVSREA-----------N-------------PL---------------------------DSQVVS 310 (478)
Q Consensus 282 Ai~~~~~~i~~l~~l~~~~~-----------~-------------~~---------------------------~~~~~~ 310 (478)
|+..+++++..|+++..+.. . ++ ...+++
T Consensus 240 ai~~~~~~i~~l~~l~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 319 (479)
T 2zog_A 240 VHEAMTDLISLMGCLVDKKGKILIPGINDAVAPVTDEEHALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLS 319 (479)
T ss_dssp SCCHHHHHHHHHTTSBCTTSCBCSTTTTTTSCCCCHHHHHHTSSCCCCHHHHHHHHTCSSCSCSSHHHHHHHHHTSCEEE
T ss_pred ccCHHHHHHHHHHhcCCCCCCEecCchhccCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccccchHHHHHHhhcCCCeE
Confidence 99999999998877643210 0 00 146899
Q ss_pred EEEEeCC----CccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhc--CCeeEEEEecCCCCCCCCc--cCCH
Q 011730 311 VTYFNGG----DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVF--RCSATVDFFDKGNTVYPPT--VNDE 382 (478)
Q Consensus 311 v~~i~gG----~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~--g~~~ev~~~~~~~~~~~~~--~~d~ 382 (478)
++.|+|| .+.|+||++|++.+++|+.|.++.+++.++|++++++.+..+ ++++++++.. .++++ ..|+
T Consensus 320 v~~i~gg~~g~~~~NvIP~~a~~~~~~R~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~d~ 395 (479)
T 2zog_A 320 LHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGH----GGKPWVSDFNH 395 (479)
T ss_dssp EEEEESSCCSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEE----EECCEECCTTS
T ss_pred EeeeecCCcCCCCccccCCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhccCCCceEEEEecC----CCCceecCCCC
Confidence 9999998 799999999999999999999999999999999999887655 5677776652 23443 3477
Q ss_pred HHHHHHHHHHHHhcCCCcccccCCCCccchH-HHHHH--hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHH
Q 011730 383 DMYEHVKKVAIDLLGPMNYRVVPPMMGAEDF-SFYSE--VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVH 459 (478)
Q Consensus 383 ~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~-~~~~~--~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~ 459 (478)
++++.+++++++.+|.++.. ...+|++|+ ++|.+ .+|++++++|++. ..+|++||+++++++.+++++|
T Consensus 396 ~~~~~~~~a~~~~~g~~~~~--~~~~gs~d~~~~~~~~~~~p~~~~g~g~~~------~~~H~~~E~i~~~~l~~~~~~~ 467 (479)
T 2zog_A 396 PHYQAGRRALKTVFGVEPDL--TREGGSIPVTLTFQEATGKNVMLLPVGSAD------DGAHSQNEKLNRLNYIEGTKML 467 (479)
T ss_dssp HHHHHHHHHHHHHHSSCCEE--EEESSCCTHHHHHHHHHCSEEEECCCBCTT------CCTTSTTCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcee--cCCCCccchHHHHHHHhCCCEEEecCCCCc------cCCCCCCCcEeHHHHHHHHHHH
Confidence 89999999999988976542 345788998 57765 3888765455432 3699999999999999999999
Q ss_pred HHHHHHHHhh
Q 011730 460 ATIAERFLNE 469 (478)
Q Consensus 460 a~~~~~ll~~ 469 (478)
+.++.++++.
T Consensus 468 ~~~~~~~~~~ 477 (479)
T 2zog_A 468 AAYLYEVSQL 477 (479)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999998763
No 17
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.9e-44 Score=378.99 Aligned_cols=366 Identities=13% Similarity=0.097 Sum_probs=285.1
Q ss_pred HHHHHHHhcCcchHH-HHHHHHHHhhcCCCCCcch---HHHHHHHHHHHHhCCCcEEecc--CCceEEEEEcC--CCCcE
Q 011730 84 SKEVMELARRPETVD-WLKSVRRTIHQNPELAFQE---FETSRLLRAELDRMEIGYKYPL--AKTGIRAWVGT--GGPPF 155 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~-~l~~l~~~L~~iPs~s~~E---~~~a~~l~~~L~~~G~~v~~~~--~~~~via~~g~--~~~p~ 155 (478)
++++.+++ ++..+ ++++++++|++|||+|++| .++++||.++|+++|++++... +.+|+++++.+ .++|+
T Consensus 31 m~~~~~~~--~~~~~~~~~~~l~~l~~ips~s~~e~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~v~a~~~g~~~~~~~ 108 (481)
T 2pok_A 31 QEQIEKFE--KDHVAQHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESYTAPFVMAHFKSSRPDAKT 108 (481)
T ss_dssp HHHHHHHH--HCHHHHHHHHHHHHHHHSCCCGGGCTTHHHHHHHHHHHHHHTTCEEEEECSSSSCEEEEEECCSSTTCCE
T ss_pred HHHHHHHH--HhhhhHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHHHcCCEEEEecCCCCcEEEEEecCCCCCCCe
Confidence 57899999 88899 9999999999999999887 8999999999999999987653 46899999943 34689
Q ss_pred EEEEEccccccCCC---CCCCCcccc-cCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC--------CCccCC-CcH
Q 011730 156 VALRADMDALPIQE---AVEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK--------PAEEAG-NGA 219 (478)
Q Consensus 156 v~~~aHlDvVP~~~---~~~~Pf~~~-~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~--------~dEE~g-~G~ 219 (478)
|+|+|||||||.++ |+.+||.+. .+|++||||+ | ++++++|.|++.|++.+..++ ++||.| .|+
T Consensus 109 i~l~aH~D~vp~~~~~~w~~~pf~~~~~~g~l~grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~g~ 188 (481)
T 2pok_A 109 LIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISFIMEGAEESASTDL 188 (481)
T ss_dssp EEEEEECCCCCSCSSCCCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTCSSCSSEEEEEEESCGGGTTTTH
T ss_pred EEEEEeccCcCCCCccccccCCCCceeeCCeEEccccccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccCchhH
Confidence 99999999999875 456699985 5899999997 3 889999999999998744433 999977 588
Q ss_pred HHHHHcC--CCCCCcEEEEEecCCCCCcceEEeecccccceeeEEEEEEEeec--CCCCCCCCCCCHHHHHHHHHHHHHh
Q 011730 220 KRMMADG--ALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKK--GGAANPHRSVDPVLAASAAVISLQG 295 (478)
Q Consensus 220 ~~l~~~g--~~~~~D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~--~Has~p~~g~NAi~~~~~~i~~l~~ 295 (478)
+.+++++ .++++|++|..+++... .+...+..+ .+|..+++|+++|++ +||+.|+.|.|||..+++++..|+.
T Consensus 189 ~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~i~~~--~~G~~~~~i~v~G~~g~~Hss~p~~g~nAi~~~a~~i~~l~~ 265 (481)
T 2pok_A 189 DKYLEKHADKLRGADLLVWEQGTKNA-LEQLEISGG--NKGIVTFDAKVKSADVDIHSSYGGVVESAPWYLLQALQSLRA 265 (481)
T ss_dssp HHHHHHHHHHHTTCSEEECSCCBBCT-TSCEEEECC--BCEEEEEEEEEECSSSCEEGGGTTTBCCHHHHHHHHHHHTBC
T ss_pred HHHHHHhHhhccCCCEEEECCCCccC-CCCeeEEEe--cceeEEEEEEEecCCCCccccCCCCCCCHHHHHHHHHHHhhC
Confidence 8887764 23348999987754221 122223333 458899999999999 8998899999999999999999876
Q ss_pred hh-----------------------hcc--------------cCC-------------CCCcEEEEEEEeCCC----ccc
Q 011730 296 LV-----------------------SRE--------------ANP-------------LDSQVVSVTYFNGGD----HLD 321 (478)
Q Consensus 296 l~-----------------------~~~--------------~~~-------------~~~~~~~v~~i~gG~----~~N 321 (478)
+. .+. ..+ ....+++++.|+||. +.|
T Consensus 266 ~~~~i~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~t~~vg~i~gG~~~~~~~N 345 (481)
T 2pok_A 266 ADGRILVEGLYEEVQEPNEREMALLETYGQRNPEEVSRIYGLELPLLQEERMAFLKRFFFDPALNIEGIQSGYQGQGVKT 345 (481)
T ss_dssp TTSCBCCTTTGGGSCCCCHHHHHHHHHHSCSCGGGHHHHHTCCSCCSSCSHHHHHHHHHHSCEEEEEEEEEECCSSSCCC
T ss_pred CCCceeccchhhcCCCCCHHHHHHHHhcCcccHHHHHHhhCcccccccccchhHHHHHhhcCeEeEEeeecCCCCCCCCe
Confidence 42 000 000 024689999999986 689
Q ss_pred eecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCcc
Q 011730 322 MIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNY 401 (478)
Q Consensus 322 vIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~ 401 (478)
+||++|++.+++|++|.++.+++.++|+++++..+. .++++++.... +.+ .+..|+++++.+++++++.+|.++.
T Consensus 346 vIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~~~-~~~~v~~~~~~---p~~-~~~~d~~l~~~~~~a~~~~~g~~~~ 420 (481)
T 2pok_A 346 ILPAEASAKLEVRLVPGLEPHDVLEKIRKQLDKNGF-DKVELYYTLGE---MSY-RSDMSAPAILNVIELAKKFYPQGVS 420 (481)
T ss_dssp EECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHTTC-TTEEEEEEEEE---CCB-CCCSCSHHHHHHHHHHTTTCTTCEE
T ss_pred eccCeeEEEEEEEeCCCCCHHHHHHHHHHHHHhhCC-CceEEEEccCC---Ccc-cCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999999999999999999987654 45655554221 221 2345789999999999988887653
Q ss_pred cccCCCCccchHHHHHHh--cccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHH
Q 011730 402 RVVPPMMGAEDFSFYSEV--VPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERF 466 (478)
Q Consensus 402 ~~~~~~~g~tD~~~~~~~--iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~l 466 (478)
. ....+|++|+++|.+. +|++. +|++... ..+|++||+++++++.+++++|++++.+|
T Consensus 421 ~-~~~~gg~~D~~~~~~~~g~p~v~--~G~g~~~----~~~H~~~E~i~i~~l~~~~~~~~~~l~~l 480 (481)
T 2pok_A 421 V-LPTTAGTGPMHTVFDALEVPMVA--FGLGNAN----SRDHGGDENVRIADYYTHIELVEELIRSY 480 (481)
T ss_dssp E-ESCBSSCCTHHHHHHHHCCCEEB--CCSBCTT----CCTTSTTCEEEHHHHHHHHHHHHHHHHTT
T ss_pred c-cccCCCCCchHHHHHHcCCCEEE--ecCCCcc----cCCCCCCCcEEHHHHHHHHHHHHHHHHhc
Confidence 1 2334444499999764 88754 4665421 46999999999999999999999998653
No 18
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}
Probab=100.00 E-value=9.7e-44 Score=362.01 Aligned_cols=328 Identities=15% Similarity=0.089 Sum_probs=262.2
Q ss_pred HHHHHHHHHHhhcCCCCC---cchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEc---CCCCcEEEEEEccccccCCCC
Q 011730 97 VDWLKSVRRTIHQNPELA---FQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVG---TGGPPFVALRADMDALPIQEA 170 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s---~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g---~~~~p~v~~~aHlDvVP~~~~ 170 (478)
.+++++++++|++|||+| ++|.++++||.++|+++|++++.. ..|+++.+. ++++|+|+|++||||||.
T Consensus 5 ~~~~~~~l~~l~~ips~s~~~~~e~~~~~~l~~~l~~~G~~~~~~--~~~~~~~~~~~~~~~~~~i~l~aH~D~vp~--- 79 (364)
T 2rb7_A 5 MQHIVELTSDLIRFPSMHSRPEQISRCAGFIMDWCAQNGIHAERM--DHDGIPSVMVLPEKGRAGLLLMAHIDVVDA--- 79 (364)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTTCCCEEE--EETTEEEEEECSBTTEEEEEEEEECCCCCC---
T ss_pred HHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHcCCeEEEe--cCCCceEEEEEcCCCCCeEEEECccCcCCC---
Confidence 578999999999999999 899999999999999999998764 256777763 234689999999999985
Q ss_pred CCCCcccc-cCCeEEeCcc-h--HHHHHHHHHHHHHHhcC--C-----C--CC----CCccCC--CcHHHHHHcCCCCCC
Q 011730 171 VEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSRE--H-----L--LK----PAEEAG--NGAKRMMADGALEDV 231 (478)
Q Consensus 171 ~~~Pf~~~-~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~--~-----~--l~----~dEE~g--~G~~~l~~~g~~~~~ 231 (478)
+.+||.+. ++|++||||+ | ++++++|.+++.|++.+ . + +. ++||.+ .|++.+++.+ ++
T Consensus 80 ~~~p~~~~~~~g~~~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~~g~~~v~~~~~~~EE~~g~~G~~~~~~~~---~~ 156 (364)
T 2rb7_A 80 EDDLFVPRVENDRLYGRGANDDKYAVALGLVMFRDRLNALKAAGRSQKDMALGLLITGDEEIGGMNGAAKALPLI---RA 156 (364)
T ss_dssp CGGGGSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCGGGTSTTTHHHHGGGC---EE
T ss_pred CCCCCccEEECCEEEecccccccHHHHHHHHHHHHHHHhCCCCcccCCCccEEEEEEeccccCchhhHHHHHhcC---CC
Confidence 57899986 4899999999 6 68899999999988642 1 3 33 999964 5999998875 57
Q ss_pred cEEEEEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCC-C--CCcE
Q 011730 232 EAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANP-L--DSQV 308 (478)
Q Consensus 232 D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~-~--~~~~ 308 (478)
|+++..+ +..|.+ +... .+|..+++|+++|+++|+|.|+.|+||+..+++++..|+.+.. .+ . +..+
T Consensus 157 d~~i~~d--~~~p~~-i~~~----~~G~~~~~i~v~G~~~Ha~~P~~g~nAi~~~~~~i~~l~~~~~---~~~~~~~~~~ 226 (364)
T 2rb7_A 157 DYVVALD--GGNPQQ-VITK----EKGIIDIKLTCTGKAAHGARPWMGVNAVDLLMEDYTRLKTLFA---EENEDHWHRT 226 (364)
T ss_dssp EEEEECS--SSBTTE-EEEE----ECEEEEEEEEEECBCEETTSGGGSBCHHHHHHHHHHHHHTTSC---CCCTTCCSCE
T ss_pred CEEEEcc--CCcccc-eEEE----eeeEEEEEEEEEeecccCCCCCCCcCHHHHHHHHHHHHHhhcc---chhhcCCCce
Confidence 7777644 334555 3322 2378899999999999999999999999999999999998732 22 2 3678
Q ss_pred EEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHH
Q 011730 309 VSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHV 388 (478)
Q Consensus 309 ~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~ 388 (478)
++++.|+||.+.|+||++|++.+++|+++.++.+++.++++++++. ++++... +++ ....++++++.+
T Consensus 227 ~~vg~i~gG~~~NviP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~-------~v~~~~~----~~~-~~~~~~~l~~~~ 294 (364)
T 2rb7_A 227 VNLGRIRAGESTNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSG-------TVSIVRT----VPV-FLAADSPYTERL 294 (364)
T ss_dssp EEEEEEEECSCTTEECSEEEEEEEEEECTTSCHHHHHHHHHHHCSS-------EEEEEEE----ECC-EECCCCHHHHHH
T ss_pred EEEEEEecCCcCcccCcceEEEEEEeeCCCCCHHHHHHHHHHHhhh-------hEEeccC----Ccc-ccCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999988753 3332111 121 233466899999
Q ss_pred HHHHHHhcCCCcccccCCCCccchHHHHHH-hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHH
Q 011730 389 KKVAIDLLGPMNYRVVPPMMGAEDFSFYSE-VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFL 467 (478)
Q Consensus 389 ~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~-~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll 467 (478)
+++++ .+|. +..+++|+++|.. .+|+++ +|++.. ...|+++|++++++|.+++++|+.++.+++
T Consensus 295 ~~~~~-~~g~-------~~~g~~D~~~~~~~~~p~v~--~Gp~~~-----~~~H~~~E~i~~~~l~~~~~~~~~~~~~~~ 359 (364)
T 2rb7_A 295 LALSG-ATAG-------KAHGASDARYLGENGLTGVV--WGAEGF-----NTLHSRDECLHIPSLQSIYDPLMQLAREME 359 (364)
T ss_dssp HHHHC-CEEE-------EESSCCGGGGTGGGTCCEEE--CCCCCT-----TCTTSTTCEEETTHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-hcCC-------CCCCCchHHHHHhcCCCEEE--ECCCCc-----cccCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 98887 4553 1578999999988 689865 566532 125999999999999999999999999998
Q ss_pred hh
Q 011730 468 NE 469 (478)
Q Consensus 468 ~~ 469 (478)
.+
T Consensus 360 ~~ 361 (364)
T 2rb7_A 360 EH 361 (364)
T ss_dssp C-
T ss_pred hh
Confidence 64
No 19
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis}
Probab=100.00 E-value=1.4e-42 Score=361.46 Aligned_cols=346 Identities=14% Similarity=0.088 Sum_probs=272.5
Q ss_pred hHHHHHHHHHHhhcCCCCCc----------chHHHHHHHHHHHHhCCCc-EEeccCCceEEEEEc-CC--CCcEEEEEEc
Q 011730 96 TVDWLKSVRRTIHQNPELAF----------QEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWVG-TG--GPPFVALRAD 161 (478)
Q Consensus 96 ~~~~l~~l~~~L~~iPs~s~----------~E~~~a~~l~~~L~~~G~~-v~~~~~~~~via~~g-~~--~~p~v~~~aH 161 (478)
.++++++++++|++|||+|+ .|.++++||.++|+++|++ ++.+ ...|+++++. ++ .+|+|+|+||
T Consensus 25 ~~~~~~~~l~~lv~i~s~s~~~~~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~d-~~~nv~a~~~g~~~~~~~~v~l~~H 103 (434)
T 3ife_A 25 MKEELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTMD-DNGYVMATLPANTDKDVPVIGFLAH 103 (434)
T ss_dssp HHHHHHHHHHHHHTSCCBCCTTCCSSSSSHHHHHHHHHHHHHHHHHTCEEEEEC-TTSCEEEEECCBSSSCCCCEEEEEE
T ss_pred HHHHHHHHHHhhEEeeccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCceEEEC-CCcEEEEEeCCCCCCCCCeEEEEEE
Confidence 36789999999999999998 5789999999999999997 7664 4578999994 33 2689999999
Q ss_pred cccccCC-CCCCCCcccc-c----------------------------CCeEEeCcc-----h--HHHHHHHHHHHHHHh
Q 011730 162 MDALPIQ-EAVEWEYKSK-V----------------------------AGKMHACGH-----D--AHVAMLIGAAKILKS 204 (478)
Q Consensus 162 lDvVP~~-~~~~~Pf~~~-~----------------------------~G~~~g~G~-----d--g~~a~~l~aa~~L~~ 204 (478)
|||||.. .|+..||... . +|++||||+ | ++++++|+|++.|++
T Consensus 104 ~DtVp~~~~~~~~p~~~~~~dg~~i~l~~~~~~~~~~~~~~~~~~~~g~~~i~grG~t~~~~D~K~gva~~l~a~~~L~~ 183 (434)
T 3ife_A 104 LDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPELPSYKGHTIITTDGTTLLGADDKAGLTEIMVAMNYLIH 183 (434)
T ss_dssp CCBCTTSCCSSCCCEEETTCCSSCEEEETTTTEEECTTTCTTGGGGTTSCEEECCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCCCccEEeecCCCCceecccccccccChhhChhHHhhcCCcEEECCCccchhhhhHHHHHHHHHHHHHHHh
Confidence 9999963 3455666532 1 258999995 3 889999999999998
Q ss_pred cCCCCC--------CCccCCCcHHHHHHcCCCCCCcEEEEEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCC-C
Q 011730 205 REHLLK--------PAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-N 275 (478)
Q Consensus 205 ~~~~l~--------~dEE~g~G~~~l~~~g~~~~~D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has-~ 275 (478)
.+..++ ++||.+.|++.+.... + ++|++++.|+++ .|.+.. + .+|..+++|+++|+++||| .
T Consensus 184 ~~~~~~~~i~~if~~~EE~g~Ga~~~~~~~-~-~~d~~~~~d~~~---~g~i~~--~--~~G~~~~~i~v~G~~~Hag~~ 254 (434)
T 3ife_A 184 NPQIKHGKIRVAFTPDEEIGRGPAHFDVEA-F-GASFAYMMDGGP---LGGLEY--E--SFNAAGAKLTFNGTNTHPGTA 254 (434)
T ss_dssp CTTSCBCCEEEEEESCGGGTCTGGGCCHHH-H-CCSEEEECCCCS---TTEEEC--C--BCEEEEEEEEEECBCCCGGGC
T ss_pred CCCCCCCCEEEEEECCcccChHHHHhhhhh-c-CCCEEEEecCCC---CCceee--c--CCCeEEEEEEEEEEecCCCCC
Confidence 764432 9999888888775433 3 589999998643 355533 2 2488999999999999998 6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHH
Q 011730 276 PHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQ 355 (478)
Q Consensus 276 p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~ 355 (478)
|+.|+|||..+++++..|+.+.... ..+.+++.+++| ..|+||++|++.+++|+++.++.+++.++|++++++.
T Consensus 255 P~~g~nAi~~aa~~i~~l~~~~~~~-----~~~~~~g~i~~g-~~n~iP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~ 328 (434)
T 3ife_A 255 KNKMRNATKLAMEFNGHLPVEEAPE-----YTEGYEGFYHLL-SLNGDVEQSKAYYIIRDFDRKNFEARKNTIENIVKQM 328 (434)
T ss_dssp TTTCBCHHHHHHHHHHTSCTTCSGG-----GCCTTCCEEEEE-EEEECSSEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHhcccccCCC-----cceeeeEEEEee-eEeEecCeEEEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988762111 122233445554 4799999999999999999999999999999999998
Q ss_pred HhhcC-CeeEEEEecCCCCCC-CCccCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHHh-cccceEEecccCC
Q 011730 356 ARVFR-CSATVDFFDKGNTVY-PPTVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEV-VPAAFYYIGIKNE 432 (478)
Q Consensus 356 ~~~~g-~~~ev~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~-iP~~~~~~G~~~~ 432 (478)
+..++ +++++++.... +.. ..+.+|+++++.+++++++ +|.++. ...+++++|+++|... +|++++ |++.
T Consensus 329 ~~~~g~~~~~v~~~~~~-~~~~~~~~~d~~l~~~~~~a~~~-~G~~~~--~~~~~ggtD~~~~~~~GiP~~~~--g~g~- 401 (434)
T 3ife_A 329 QEKYGQDAVVLEMNDQY-YNMLEKIEPVREIVDIAYEAMKS-LNIEPN--IHPIRGGTDGSQLSYMGLPTPNI--FTGG- 401 (434)
T ss_dssp HHHHCGGGEEEEEEEEE-CCTHHHHGGGTHHHHHHHHHHHH-TTCCCE--ECCBSSCCHHHHHHHTTCCCCEE--CCSE-
T ss_pred HHhcCCceEEEEEeecc-cchhccccCCHHHHHHHHHHHHH-hCCCCE--EeecccCchHHHHhhCCCcEEEe--CCCC-
Confidence 88888 66666665210 111 1356788999999999998 787653 4567899999999886 998864 4432
Q ss_pred CCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHhh
Q 011730 433 TLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 469 (478)
Q Consensus 433 ~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~~ 469 (478)
..+|+++|+++++++.+++++|++++.+|.++
T Consensus 402 -----~~~H~~~E~i~~~~l~~~~~~~~~~l~~la~~ 433 (434)
T 3ife_A 402 -----ENYHGKFEYVSVDVMEKAVQVIIEIARRFEEQ 433 (434)
T ss_dssp -----ESTTSTTCEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcCCceeecHHHHHHHHHHHHHHHHHHhhc
Confidence 25999999999999999999999999998753
No 20
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A
Probab=100.00 E-value=9.8e-42 Score=353.92 Aligned_cols=339 Identities=14% Similarity=0.145 Sum_probs=272.6
Q ss_pred cchHHHHHHHHHHhhcCCCCC----------cchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEc-CCC-CcEEEEEEc
Q 011730 94 PETVDWLKSVRRTIHQNPELA----------FQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVG-TGG-PPFVALRAD 161 (478)
Q Consensus 94 ~~~~~~l~~l~~~L~~iPs~s----------~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g-~~~-~p~v~~~aH 161 (478)
+...+++++++++|++||+++ ++|.++++||.++|+++|++++.+.. .|+++++. .++ +|+|+|++|
T Consensus 5 ~~~~~~~~~~l~~lv~i~s~s~~g~~~~~~s~~e~~~~~~i~~~l~~~G~~v~~~~~-gnv~a~~~g~~~~~~~i~l~~H 83 (423)
T 1z2l_A 5 THFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEV-GNLYGRLNGTEYPQEVVLSGSH 83 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHTTCEEEECTT-SCEEEEECCSSEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHHhcCCCCCCCcccCcCCHHHHHHHHHHHHHHHHcCCEEEEecC-CcEEEEEcCCCCCCCEEEEEEe
Confidence 556788999999999999987 68999999999999999999876433 48999994 333 389999999
Q ss_pred cccccCCCCCCCCcccccCCeEEeCcchHHHHHHHHHHHHHHhcCCCCC--------CCccCCC------cHHHHHH---
Q 011730 162 MDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLK--------PAEEAGN------GAKRMMA--- 224 (478)
Q Consensus 162 lDvVP~~~~~~~Pf~~~~~G~~~g~G~dg~~a~~l~aa~~L~~~~~~l~--------~dEE~g~------G~~~l~~--- 224 (478)
|||||.+.+ .+..++++++|++++.|++.+.+++ ++||.+. |++.+..
T Consensus 84 ~D~Vp~~g~---------------~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~i~~~~EE~~~~~~g~~Gs~~~~~~~~ 148 (423)
T 1z2l_A 84 IDTVVNGGN---------------LDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLAN 148 (423)
T ss_dssp CCCCTTBCS---------------STTHHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCCSSSCSCHHHHHHTTCCC
T ss_pred cCCCCCCCc---------------cCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCccccccCCCcccHHHHHcCCC
Confidence 999996421 1123678889999999998665443 9999742 8888775
Q ss_pred -c--------------------CCC---------CCCcEEEEEecCCC-------CCcceEEeecccccceeeEEEEEEE
Q 011730 225 -D--------------------GAL---------EDVEAIFAVHVSHE-------HPTGVIGSRPGPLLAGCGFFHAVIS 267 (478)
Q Consensus 225 -~--------------------g~~---------~~~D~~i~~~~~~~-------~~~g~i~~~~g~~~~g~~~~~i~v~ 267 (478)
+ |+. .++|+++.+|..++ .+.+.+. + .+|..+++|+++
T Consensus 149 ~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~p~~~~~~~~~~~~h~~~~~~~e~~~~~~~~~~---~--~~g~~~~~i~v~ 223 (423)
T 1z2l_A 149 PDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVN---A--IVGQRRYTVTLN 223 (423)
T ss_dssp GGGTSSCCCSSSCCHHHHHHHTTCCCCSSCCCCCCCEEEEEEEEECCSSHHHHTTCCEEEEE---E--ECEEEEEEEEEE
T ss_pred HHHHhhhcCcCCcCHHHHHHHcCCccccccccCCCCceEEEEEEeccCchHHHCCCCeEEEe---e--EecceEEEEEEE
Confidence 2 221 14578888876543 1222222 2 347889999999
Q ss_pred eecCCCC-CCC-CCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCC-CccceecCcEEEEEEEeccChHhHHHH
Q 011730 268 GKKGGAA-NPH-RSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNTSFYQL 344 (478)
Q Consensus 268 G~~~Has-~p~-~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG-~~~NvIP~~a~~~~diR~~p~~~~~~i 344 (478)
|+++|+| .|+ .|+||+..+++++..|+++..+ ..+ ..+++++.|+|| .+.|+||++|++.+++|+++.++.+++
T Consensus 224 G~~~Ha~~~P~~~g~nAi~~~a~~i~~l~~~~~~-~~~--~~~~~vg~i~gg~~~~NvIP~~a~~~~d~R~~~~~~~~~i 300 (423)
T 1z2l_A 224 GESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKR-MGD--PLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDF 300 (423)
T ss_dssp CCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHH-HCT--TCEEECCCEEEESCCTTEECCEEEEEEEEEESSHHHHHHH
T ss_pred eEcCCCCCCccccCcCHHHHHHHHHHHHHHHHHh-cCC--CceEEEEEEeecCCcceeECCEEEEEEEeeCCCHHHHHHH
Confidence 9999999 695 8999999999999999887543 222 468899999997 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHHhcccce
Q 011730 345 LQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEVVPAAF 424 (478)
Q Consensus 345 ~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~iP~~~ 424 (478)
.+++++++++.+..++++++++... .++++.+|+++++.+++++++. |.++. ...+++++|+++|+..+|+++
T Consensus 301 ~~~i~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~-g~~~~--~~~~~ggtD~~~~~~~~p~~~ 373 (423)
T 1z2l_A 301 TQQLENDMRAICDEMDIGIDIDLWM----DEEPVPMNKELVATLTELCERE-KLNYR--VMHSGAGHDAQIFAPRVPTCM 373 (423)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEE----EECCEECCHHHHHHHHHHHHHT-TCCEE--EEEESSCCTHHHHTTTSCEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEec----CCCCccCCHHHHHHHHHHHHHc-CCCeE--EecCCCcccHHHHHhhCCEEE
Confidence 9999999999888889988887652 4567778999999999999996 87642 356789999999988899977
Q ss_pred EEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHhh
Q 011730 425 YYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 469 (478)
Q Consensus 425 ~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~~ 469 (478)
.|++... ..+|+++|+++++++.+++++|+.++.+|+.+
T Consensus 374 ~~~p~~~------~~~H~~~E~i~~~~l~~~~~~~~~~~~~l~~~ 412 (423)
T 1z2l_A 374 IFIPSIN------GISHNPAERTNITDLAEGVKTLALMLYQLAWQ 412 (423)
T ss_dssp EEECCGG------GCCSSTTCCCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEeCCCC------CCCCCccccCCHHHHHHHHHHHHHHHHHHHhh
Confidence 6544332 35999999999999999999999999999886
No 21
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}
Probab=100.00 E-value=3.2e-41 Score=348.54 Aligned_cols=333 Identities=18% Similarity=0.208 Sum_probs=271.6
Q ss_pred HHHHHHHHHHhhcCCCC----------CcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEc-CCC-CcEEEEEEcccc
Q 011730 97 VDWLKSVRRTIHQNPEL----------AFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVG-TGG-PPFVALRADMDA 164 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~----------s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g-~~~-~p~v~~~aHlDv 164 (478)
.+++++++++|++||+. |++|.++++||.++|+++|++++.+.. .|+++++. +++ +|+|+|.+|||+
T Consensus 4 ~~~~~~~l~~l~~i~s~~~~g~~r~~~s~~e~~~~~~l~~~l~~~g~~~~~d~~-gnv~a~~~g~~~~~~~i~l~aH~D~ 82 (408)
T 3n5f_A 4 GERLWQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAA-GNLIGRKEGTNPDATVVLVGSHLDS 82 (408)
T ss_dssp HHHHHHHHHHHHTTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHHTCEEEECTT-CCEEEEECCSSTTSCEEEEEEESCC
T ss_pred HHHHHHHHHHHHccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEcCC-CCEEEEecCCCCCCCEEEEEecCCC
Confidence 57889999999999993 789999999999999999999887543 49999994 343 799999999999
Q ss_pred ccCCCCCCCCcccccCCeEEeCcchHHHHHHHHHHHHHHhcCCCCC--------CCccCC------CcHHHHH-------
Q 011730 165 LPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLK--------PAEEAG------NGAKRMM------- 223 (478)
Q Consensus 165 VP~~~~~~~Pf~~~~~G~~~g~G~dg~~a~~l~aa~~L~~~~~~l~--------~dEE~g------~G~~~l~------- 223 (478)
||.+. . ....++++++|.+++.|++.+.+++ ++||.+ .|++.++
T Consensus 83 v~~~g------------~---~d~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~~~~~~g~~Gs~~~~~~~~~~~ 147 (408)
T 3n5f_A 83 VYNGG------------C---FDGPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGMIGSRAMAGTLPPEA 147 (408)
T ss_dssp CTTBC------------S---STTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCSSCTTTTCCCHHHHHHHTCCCGGG
T ss_pred CCCCC------------c---cCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCccccccCCCCcCHHHHHcCCCHHH
Confidence 99531 1 1122678888999999998765443 999963 2888887
Q ss_pred -----HcC-----------C----C-----C--CCcEEEEEecCCC-------CCcceEEeecccccceeeEEEEEEEee
Q 011730 224 -----ADG-----------A----L-----E--DVEAIFAVHVSHE-------HPTGVIGSRPGPLLAGCGFFHAVISGK 269 (478)
Q Consensus 224 -----~~g-----------~----~-----~--~~D~~i~~~~~~~-------~~~g~i~~~~g~~~~g~~~~~i~v~G~ 269 (478)
++| + + + ++|+++..|+..+ .+.+.+ .+ .+|..+++|+++|+
T Consensus 148 ~~~~~~~G~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~lhi~~g~~le~~~~~~gi~---~~--~~g~~~~~i~v~G~ 222 (408)
T 3n5f_A 148 LECRDAEGISLAEAMKQAGLDPDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIV---TG--IAGLIWVKFTIEGK 222 (408)
T ss_dssp GSCBCTTCCBHHHHHHHTTCCGGGGGGGCCCTTTEEEEEEEEECSSSHHHHHTCSEEEE---EE--ECEEEEEEEEEECC
T ss_pred hhccCCCCCCHHHHHHHhCCChhhhhhcccCccCccEEEEEeeccchhHHHcCCCeEEE---EE--eccceEEEEEEEEE
Confidence 222 2 1 2 5688898887543 222322 22 34789999999999
Q ss_pred cCCCC-CC-CCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCC-CccceecCcEEEEEEEeccChHhHHHHHH
Q 011730 270 KGGAA-NP-HRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNTSFYQLLQ 346 (478)
Q Consensus 270 ~~Has-~p-~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG-~~~NvIP~~a~~~~diR~~p~~~~~~i~~ 346 (478)
++|++ .| +.|+||+..+++++.+|+.+. +..+ ..++++|.|+|| .+.|+||++|++.+++|+++.++.+++.+
T Consensus 223 ~~Hags~P~~~g~nAi~~aa~~i~~l~~~~-~~~~---~~~~~vg~i~gG~~~~NvIP~~a~~~~diR~~~~~~~~~i~~ 298 (408)
T 3n5f_A 223 AEHAGATPMSLRRDPMAAAAQIIIVIEEEA-RRTG---TTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWK 298 (408)
T ss_dssp CEETTTSCTTTCCCHHHHHHHHHHHHHHHH-HHHS---SCEEEEEEEEEESCCTTEECSEEEEEEEEEESSHHHHHHHHH
T ss_pred cCcCCCCccccccCHHHHHHHHHHHHHHHH-HhcC---CcEEEEEEEEecCCCCcCcCCeEEEEEEEeCCCHHHHHHHHH
Confidence 99994 79 589999999999999999875 3322 578999999997 89999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHHhcccceEE
Q 011730 347 RIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEVVPAAFYY 426 (478)
Q Consensus 347 ~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~iP~~~~~ 426 (478)
+|++++++.+..+++++++++.. .++++.+|+++++.+++++++. |.+.. ...+++++|+++|++.+|+++++
T Consensus 299 ~i~~~~~~~a~~~g~~~~i~~~~----~~p~~~~d~~l~~~~~~a~~~~-g~~~~--~~~~~ggtD~~~~~~~iP~~~~~ 371 (408)
T 3n5f_A 299 AIAVRAETIAKERNVRVTTERLQ----EMPPVLCSDEVKRAAEAACQKL-GYPSF--WLPSGAAHDSVQLAPICPIGMIF 371 (408)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEE----EECCEECCHHHHHHHHHHHHHH-TCCCC--EEEESSCCTTTTTTTTSCEEEEE
T ss_pred HHHHHHHHHHHHhCCeEEEEEec----CCCCcCCCHHHHHHHHHHHHHc-CCCcc--cCCCcCchHHHHHHHHCCEEEEE
Confidence 99999999888889999988763 5677888999999999999986 86542 34567899999998889998777
Q ss_pred ecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHH
Q 011730 427 IGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFL 467 (478)
Q Consensus 427 ~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll 467 (478)
+|... ..+|+++|++++++|..++++|+.++.+|.
T Consensus 372 ~~~~~------~~~H~~~E~i~~~~l~~~~~~~~~~~~~l~ 406 (408)
T 3n5f_A 372 VRSQD------GVSHSPAEWSTKEDCAAGAEVLYHTVWQLA 406 (408)
T ss_dssp ECCGG------GCCSSTTCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCC------CCCCCccccCCHHHHHHHHHHHHHHHHHHh
Confidence 77543 258999999999999999999999998874
No 22
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Probab=100.00 E-value=5.2e-42 Score=362.48 Aligned_cols=358 Identities=13% Similarity=0.058 Sum_probs=240.2
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhhcCCCCCcch------------HHHHHHHHHHHHhCCCcEEeccCCceEEEEEcCC
Q 011730 84 SKEVMELARRPETVDWLKSVRRTIHQNPELAFQE------------FETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG 151 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~l~~~L~~iPs~s~~E------------~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~ 151 (478)
++++.+++ +++++++++++++|++|||+|++| .++++||.++|+++||+++...+ ...++.++.+
T Consensus 22 ~~~i~~~i--~~~~~~~~~~l~~lv~ips~s~~e~~~~~~p~g~~~~~~~~~l~~~l~~~G~~~~~~~~-~~~~~~~g~~ 98 (492)
T 3khx_A 22 ASMWKEKV--QQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDH-IAGRIEAGKG 98 (492)
T ss_dssp -CTTHHHH--HTTHHHHHHHHHHHHTSCCCCCSSSCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEETT-TEEEEEEECS
T ss_pred HHHHHHHH--HHhHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHcCCcceEeCC-EEEEEEeCCC
Confidence 35678888 889999999999999999999987 48999999999999999876532 2223334443
Q ss_pred CCcEEEEEEccccccCCC-CCCCCcccc-cCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC--------CCccCC-C
Q 011730 152 GPPFVALRADMDALPIQE-AVEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK--------PAEEAG-N 217 (478)
Q Consensus 152 ~~p~v~~~aHlDvVP~~~-~~~~Pf~~~-~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~--------~dEE~g-~ 217 (478)
+|+|+|+|||||||+++ |+.+||++. ++|++||||+ | ++++++|.|++.|++.+.+++ ++||.+ .
T Consensus 99 -~~~i~l~~H~D~vp~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 177 (492)
T 3khx_A 99 -NDVLGILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWK 177 (492)
T ss_dssp -SCEEEEEEECCCCCCCSCCSSCTTSCEECSSEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEECCTTCCCC
T ss_pred -CCEEEEEEeccCCCCCCCcccCCCceEEECCEEEecCCccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccCCCc
Confidence 68999999999999875 678899985 6899999998 4 889999999999998765543 999987 5
Q ss_pred cHHHHHHcCCCCCCcEEEEEecCC----------------------------------------CCCcce--EEeec---
Q 011730 218 GAKRMMADGALEDVEAIFAVHVSH----------------------------------------EHPTGV--IGSRP--- 252 (478)
Q Consensus 218 G~~~l~~~g~~~~~D~~i~~~~~~----------------------------------------~~~~g~--i~~~~--- 252 (478)
|++.++++.. .+|+++..+... ..|... +...+
T Consensus 178 g~~~~~~~~~--~~~~~~~~d~~~p~~~g~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~n~vpd~~~aiv~ept~~ 255 (492)
T 3khx_A 178 CTDRYFKTEE--MPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENM 255 (492)
T ss_dssp TTSHHHHHSC--CCSEEECSSCSSCSCCCBCEEEEEEEEECCCCCCCCCCSEEEEEEEECSCTTSCCCEEEEEEEECSCH
T ss_pred CHHHHHHhCc--CCCEEEecCCCccEEEecCcEEEEEEEEeccccccccccceeEEecccccCCcCCchHheEeecccch
Confidence 9999988743 244433221100 000000 00000
Q ss_pred ------------ccccceee-----EEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHH------hhhh---c-------
Q 011730 253 ------------GPLLAGCG-----FFHAVISGKKGGAANPHRSVDPVLAASAAVISLQ------GLVS---R------- 299 (478)
Q Consensus 253 ------------g~~~~g~~-----~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~------~l~~---~------- 299 (478)
....+|.. +++|+++|+++|+|.|+.|+|||..++++|.+|+ .+.. .
T Consensus 256 ~~~~~~~~~~~~~~g~kG~~~~~~~~~~i~v~GkaaHas~P~~G~NAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 335 (492)
T 3khx_A 256 TDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDF 335 (492)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETTEEEEEEECBCCCC------BCHHHHHHHHHTTSCBCHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHHHHhhcCceeEEEecCCeEEEEEEeEEcccCCCccCccHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCC
Confidence 01124666 8999999999999999999999999999998876 2110 0
Q ss_pred -------ccCC-CCCcEEEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCC
Q 011730 300 -------EANP-LDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKG 371 (478)
Q Consensus 300 -------~~~~-~~~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~ 371 (478)
..++ .+..++|+|+|++|. |++|++.+|+|+++.++.+++.++|++++++ +++++++....
T Consensus 336 ~~~l~i~~~d~~~G~~t~n~g~i~~g~-----P~~a~~~idiR~~~~~~~~~v~~~i~~~~~~----~g~~~~i~~~~-- 404 (492)
T 3khx_A 336 GEKMGMKFHTDVMGDVTTNIGVITYDN-----ENAGLFGINLRYPEGFEFEKAMDRFANEIQQ----YGFEVKLGKVQ-- 404 (492)
T ss_dssp SGGGTCC-------CCEEEEEEEEEET-----TTCCEEEEEEEECTTCCHHHHHHHHHHHHGG----GTEEEEEEEEE--
T ss_pred ccccCCccccCCcCccEEeeeEEEEec-----CCEEEEEEEeeCCCCCCHHHHHHHHHHHHHH----cCCEEEEeccC--
Confidence 0112 456889999999885 9999999999999999999999999888763 56777765432
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHHhcccceEEecccCCCCCCCCCCCCCCcccCcCc
Q 011730 372 NTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDV 451 (478)
Q Consensus 372 ~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~ 451 (478)
+++ .+..|+++++.+++++++.+|.++. ...+.|++|++++...+|..+.| ++. ...+|++||++++++
T Consensus 405 -~p~-~~~~d~~lv~~l~~a~~~~~G~~~~--~~~~gggtDa~~~~~~v~~G~~f--Pg~-----~~~~H~~dE~v~i~~ 473 (492)
T 3khx_A 405 -PPH-YVDKNDPFVQKLVTAYRNQTNDMTE--PYTIGGGTYARNLDKGVAFGAMF--SDS-----EDLMHQKNEYITKKQ 473 (492)
T ss_dssp -CCB-CCGGGCHHHHHHHHHHHTTCC--------------------------------------------CCSCEEEHHH
T ss_pred -Cce-ecCCCcHHHHHHHHHHHHHhCCCCe--EEeeehhHHHHHhhCceEECCcC--CCC-----CCCCCCCccCcCHHH
Confidence 211 2345789999999999998787653 46778999999998655543322 222 246999999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 011730 452 LPVGAAVHATIAERFLNE 469 (478)
Q Consensus 452 l~~~~~i~a~~~~~ll~~ 469 (478)
+.+++++|++++.+|++.
T Consensus 474 l~~~~~i~~~~l~~l~~~ 491 (492)
T 3khx_A 474 LFNATSIYLEAIYSLCVE 491 (492)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999998753
No 23
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A
Probab=100.00 E-value=2.4e-41 Score=350.36 Aligned_cols=339 Identities=16% Similarity=0.123 Sum_probs=272.6
Q ss_pred HHHHHHHHhhcCCCCCc----------chHHHHHHHHHHHHhCCCc-EEeccCCceEEEEEcC-C--CCcEEEEEEcccc
Q 011730 99 WLKSVRRTIHQNPELAF----------QEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWVGT-G--GPPFVALRADMDA 164 (478)
Q Consensus 99 ~l~~l~~~L~~iPs~s~----------~E~~~a~~l~~~L~~~G~~-v~~~~~~~~via~~g~-~--~~p~v~~~aHlDv 164 (478)
++++++++|++|||+|+ .|.++++||.++|+++|++ ++.. ...|+++++++ + ++|+|+|+|||||
T Consensus 3 ~~~~~l~~Lv~i~s~s~~~~~~~p~~~~e~~~~~~l~~~l~~~G~~~~~~~-~~~nvia~~~g~~~~~~~~i~l~aH~D~ 81 (417)
T 1fno_A 3 KLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLS-EKGTLMATLPANVEGDIPAIGFISHVDT 81 (417)
T ss_dssp SHHHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEEC-TTCCEEEEECCSSCSCCCCEEEEEECCB
T ss_pred HHHHHHHHhEEecCCCCcccCCCCCCccHHHHHHHHHHHHHHcCCCeEEEC-CCceEEEEECCCCCCCCCceEEEEeccc
Confidence 57889999999999998 7889999999999999998 7654 45799999943 3 3689999999999
Q ss_pred ccCCC-CCCCCc-----ccc-----------------------cCCeEEeCc-----ch--HHHHHHHHHHHHHHhcCCC
Q 011730 165 LPIQE-AVEWEY-----KSK-----------------------VAGKMHACG-----HD--AHVAMLIGAAKILKSREHL 208 (478)
Q Consensus 165 VP~~~-~~~~Pf-----~~~-----------------------~~G~~~g~G-----~d--g~~a~~l~aa~~L~~~~~~ 208 (478)
||..+ |...|| ... .+|++|||| +| ++++++|++++.|++.+ .
T Consensus 82 Vp~~~~~~~~p~~~~~~~g~~i~~~~g~~~~~~~~~~~~~~~~gd~~l~grGat~l~~D~K~g~a~~l~a~~~l~~~~-~ 160 (417)
T 1fno_A 82 SPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNP-I 160 (417)
T ss_dssp CTTSCCSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTTSCEEECCSSSCCCHHHHHHHHHHHHHHHHHHSSS-C
T ss_pred cCCCCCCCCCceEEecCCCCeecccccccccchhhcchhhhhcCCcEEEcCCccccccccHHhHHHHHHHHHHHHhCC-C
Confidence 99754 344564 322 246899999 66 88999999999999866 3
Q ss_pred CC--------CCccCCCcHHHHHHcCCCCCCcEEEEEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCC-CCCCC
Q 011730 209 LK--------PAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-NPHRS 279 (478)
Q Consensus 209 l~--------~dEE~g~G~~~l~~~g~~~~~D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has-~p~~g 279 (478)
+. ++||.+.|++.+.++++ ++|+++..++. +.+.+.. + .+|..+++|+++|+++|+| .|+.|
T Consensus 161 ~~~~v~~~~~~~EE~g~Ga~~~~~~~~--~~d~~i~~d~~---~~g~i~~--~--~~g~~~~~i~~~G~~~Hs~~~p~~g 231 (417)
T 1fno_A 161 PHGDIKVAFTPDEEVGKGAKHFDVEAF--GAQWAYTVDGG---GVGELEF--E--NFNAASVNIKIVGNNVHPGTAKGVM 231 (417)
T ss_dssp CCCCEEEEEESCGGGTCTTTTCCHHHH--CCSEEEECCCC---STTBEEC--C--BCEEEEEEEEEECBCCCGGGCTTTC
T ss_pred CCCcEEEEEEeccccCCChhhhchhhc--CCCEEEEeCCC---CcCeeEE--e--cCCceeEEEEEEeeccCCCCCcccc
Confidence 32 99998778877765543 57898887754 3355432 2 3478899999999999999 59999
Q ss_pred CCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhc
Q 011730 280 VDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVF 359 (478)
Q Consensus 280 ~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~ 359 (478)
+||+..+++++..|+.+..+........+++++.++|| |++|++.+++|+.+.++.+++.++|++++++.+..+
T Consensus 232 ~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG------p~~a~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~ 305 (417)
T 1fno_A 232 VNALSLAARIHAEVPADEAPETTEGYEGFYHLASMKGT------VDRAEMHYIIRDFDRKQFEARKRKMMEIAKKVGKGL 305 (417)
T ss_dssp BCHHHHHHHHHHTSCTTSSGGGCCTTCCEEEEEEEEEC------SSEEEEEEEEEESSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHhhhccCCcccccccccEEEEEEEeec------cCeEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999877433333334567999999988 999999999999999999999999999999988777
Q ss_pred CCe--eEEEEecCCCCCCC----CccCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHHh-cccceEEecccCC
Q 011730 360 RCS--ATVDFFDKGNTVYP----PTVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEV-VPAAFYYIGIKNE 432 (478)
Q Consensus 360 g~~--~ev~~~~~~~~~~~----~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~-iP~~~~~~G~~~~ 432 (478)
+.. +++++.. .++ .+.+|+++++.+++++++ +|.+.. ...+.+++|+++|... +|++. +|++.
T Consensus 306 ~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~-~g~~~~--~~~~~ggtD~~~~~~~gip~v~--~G~~~- 375 (417)
T 1fno_A 306 HPDCYIELVIED----SYYNMREKVVEHPHILDIAQQAMRD-CHITPE--MKPIRGGTDGAQLSFMGLPCPN--LFTGG- 375 (417)
T ss_dssp CTTCCEEEEEEE----EECCCHHHHHTSTHHHHHHHHHHHH-TTCCCB--CCCBSSCCHHHHHTTTTCCCCE--ECCSE-
T ss_pred CCCceEEEEEec----cccchhccccCCCHHHHHHHHHHHH-cCCCce--eccceeccchHhHHhcCCCEEE--EcCCC-
Confidence 753 6666542 122 245788999999999998 687653 4567899999999874 99875 45543
Q ss_pred CCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHhh
Q 011730 433 TLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 469 (478)
Q Consensus 433 ~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~~ 469 (478)
..+|+++|+++++++.+++++|+.++.+++..
T Consensus 376 -----~~~H~~~E~i~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 1fno_A 376 -----YNYHGKHEFVTLEGMEKAVQVIVRIAELTAKR 407 (417)
T ss_dssp -----ESTTSTTCEEEHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----CCCCCcccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 24899999999999999999999999998764
No 24
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT}
Probab=100.00 E-value=6.8e-41 Score=353.80 Aligned_cols=340 Identities=16% Similarity=0.150 Sum_probs=264.6
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEcC--C--CCcEEEEEEccccccCC----
Q 011730 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT--G--GPPFVALRADMDALPIQ---- 168 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~--~--~~p~v~~~aHlDvVP~~---- 168 (478)
.+++++++++|++|||+|++|.++++||.++|+++|++++... ..|+++++++ + ++|+|+|++||||||.+
T Consensus 10 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~-~~nv~a~~~g~~g~~~~~~i~l~aH~D~vp~~~~~~ 88 (487)
T 2qyv_A 10 PKLLWQWFDQICAIPHPSYKEEQLAQFIINWAKTKGFFAERDE-VGNVLIRKPATVGMENRKPVVLQAHLDMVPQANEGT 88 (487)
T ss_dssp SHHHHHHHHHHHHSCCBTTCCHHHHHHHHHHHHHTTCEEEECT-TCCEEEEECCCTTCTTBCCEEEEEESCBCCC-----
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHcCCEEEEcC-CCcEEEEeCCCCCCCCCCeEEEEccCCccCCCCCCC
Confidence 5789999999999999999999999999999999999987643 4689999953 2 35899999999999986
Q ss_pred --CCCCCCcccc-cCCeEEeCcc----h--HHHHHHHHHHHHHHhcCC---CC----CCCccCC-CcHHHHHHcCCCCCC
Q 011730 169 --EAVEWEYKSK-VAGKMHACGH----D--AHVAMLIGAAKILKSREH---LL----KPAEEAG-NGAKRMMADGALEDV 231 (478)
Q Consensus 169 --~~~~~Pf~~~-~~G~~~g~G~----d--g~~a~~l~aa~~L~~~~~---~l----~~dEE~g-~G~~~l~~~g~~~~~ 231 (478)
+|+.+||++. .+|++||||+ | ++++++|.+++ +.+. .+ .++||.+ .|++.+++++ + ++
T Consensus 89 ~~~w~~~p~~~~~~dg~l~g~G~~lgaD~k~g~a~~l~a~~---~~~~~~~~v~~~~~~~EE~g~~Ga~~~~~~~-~-~~ 163 (487)
T 2qyv_A 89 NHNFDQDPILPYIDGDWVKAKGTTLGADNGIGMASALAVLE---SNDIAHPELEVLLTMTEERGMEGAIGLRPNW-L-RS 163 (487)
T ss_dssp -----CCCCCEEECSSEEEETTBCCCHHHHHHHHHHHHHHH---CSSSCCSSEEEEEESCTTTTCHHHHTCCSSC-C-CC
T ss_pred ccccccCCeeEEeeCCEEEeCCCCcCCcCHHHHHHHHHHHH---hCCCCCCCEEEEEEeccccCCHHHHHHHHhc-c-CC
Confidence 4577899986 5799999999 5 56666666654 2221 11 1999976 5888888765 3 48
Q ss_pred cEEEEEecCCCCCcceEEee-ccc-------------ccceeeEEEEEEEe-ecCCCCCC-CCC-CCHHHHHHHHHHHHH
Q 011730 232 EAIFAVHVSHEHPTGVIGSR-PGP-------------LLAGCGFFHAVISG-KKGGAANP-HRS-VDPVLAASAAVISLQ 294 (478)
Q Consensus 232 D~~i~~~~~~~~~~g~i~~~-~g~-------------~~~g~~~~~i~v~G-~~~Has~p-~~g-~NAi~~~~~~i~~l~ 294 (478)
|+++..++.. .+.+... .|. ..+| .+++|+++| +++|||.| +.| .||+..+++++..|+
T Consensus 164 d~~~~~d~~~---~~~i~~g~~g~~~~~~~~~~~~~~~~~g-~~~~i~v~G~~~~Hsg~~~~~g~~nAi~~~~~~i~~l~ 239 (487)
T 2qyv_A 164 EILINTDTEE---NGEIYIGCAGGENADLELPIEYQVNNFE-HCYQVVLKGLRGGHSGVDIHTGRANAIKVLLRFLAELQ 239 (487)
T ss_dssp SEEEECCCCC---TTEEEEEECEEEEEEEEEECCEEECCCS-EEEEEEEECCCCCBTTTTTTSCCCCHHHHHHHHHHHHH
T ss_pred CEEEEEccCC---CCeEEEeccCCcceeeeccccccccCCC-eEEEEEEEccCCccCCcccccCCCCHHHHHHHHHHHHh
Confidence 9999877653 2333221 111 2234 789999999 89999986 776 699999999999998
Q ss_pred hhhhcccCCCCCcEEEEEEEeCCCccceecCcEEEEEEE----------------------------------------e
Q 011730 295 GLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTL----------------------------------------R 334 (478)
Q Consensus 295 ~l~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~a~~~~di----------------------------------------R 334 (478)
.+. ...+++++.|+||.+.|+||++|++.+++ |
T Consensus 240 ~~~-------~~~~~~v~~i~gG~~~NvIP~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 312 (487)
T 2qyv_A 240 QNQ-------PHFDFTLANIRGGSIRNAIPRESVATLVFNGDITVLQSAVQKFADVIKAELALTEPNLIFTLEKVEKPQQ 312 (487)
T ss_dssp HHC-------TTCCEEEEEEEEESCTTBCCCCEEEEEEECSCHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEECCCCSE
T ss_pred hcc-------CCCcEEEEEEeCCCcCcccCCceEEEEEecCCHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecccccc
Confidence 862 13568999999999999999999999999 9
Q ss_pred ccChHhHHHHHHHHHHH---------------------------------------------------HHHHHhhcCCee
Q 011730 335 AFSNTSFYQLLQRIEEV---------------------------------------------------IVEQARVFRCSA 363 (478)
Q Consensus 335 ~~p~~~~~~i~~~i~~~---------------------------------------------------~~~~~~~~g~~~ 363 (478)
++|.++.+.+.+.|+++ +++.+..+|+++
T Consensus 313 ~~~~~~~~~i~~~i~~~~~gv~~~~~~~~~~~~~s~nl~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~g~~~ 392 (487)
T 2qyv_A 313 VFSSQCTKNIIHCLNVLPNGVVRNSDVIENVVETSLSIGVLKTEDNFVRSTMLVRSLIESGKSYVASLLKSLASLAQGNI 392 (487)
T ss_dssp EECHHHHHHHHHHHHHSCCEEEEECSSSTTCEEEEEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ccCHHHHHHHHHHHHhCCCcceeeccccCCceEeccceEEEEEcCCeEEEEEEccCCCHHHHHHHHHHHHHHHHHcCceE
Confidence 99999998888888765 344566678877
Q ss_pred EEEEecCCCCCCCCcc--CCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHHhcccc-eEEecccCCCCCCCCCC
Q 011730 364 TVDFFDKGNTVYPPTV--NDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEVVPAA-FYYIGIKNETLGSIHTG 440 (478)
Q Consensus 364 ev~~~~~~~~~~~~~~--~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~iP~~-~~~~G~~~~~~~~~~~~ 440 (478)
++... +|++. .|+++++.+++++++++|.++. ...+.+++|+++|.+.+|.+ ++.+|++. ..+
T Consensus 393 ~~~~~------~p~~~~~~d~~l~~~~~~~~~~~~G~~~~--~~~~~gg~D~~~~~~~~pg~~~v~~Gp~~------~~~ 458 (487)
T 2qyv_A 393 NLSGD------YPGWEPQSHSDILDLTKTIYAQVLGTDPE--IKVIHAGLECGLLKKIYPTIDMVSIGPTI------RNA 458 (487)
T ss_dssp EEEEE------ECCBCCCSCCHHHHHHHHHHHHHHSSCCE--EEEESSCCTHHHHHHHCTTSEEEECCCCE------EST
T ss_pred EECCC------CCCCCCCCCCHHHHHHHHHHHHHhCCCCe--EEEEeccccHHHHHhhCCCCCEEEECCCC------CCC
Confidence 76532 23333 5789999999999998897653 35678999999999876654 33456532 359
Q ss_pred CCCCcccCcCchHHHHHHHHHHHHHHH
Q 011730 441 HSPYFMIDEDVLPVGAAVHATIAERFL 467 (478)
Q Consensus 441 H~~dE~i~~~~l~~~~~i~a~~~~~ll 467 (478)
|+|||+++++++.+++++|+.++.+|+
T Consensus 459 H~~~E~v~~~~l~~~~~~~~~~l~~l~ 485 (487)
T 2qyv_A 459 HSPDEKVHIPAVETYWKVLTGILAHIP 485 (487)
T ss_dssp TSTTCEEEHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCceeEHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998875
No 25
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Probab=100.00 E-value=5e-41 Score=353.53 Aligned_cols=338 Identities=15% Similarity=0.124 Sum_probs=269.2
Q ss_pred hHHHHHHHHHHh-hcCCCC-----------------CcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEc-CCCCcEE
Q 011730 96 TVDWLKSVRRTI-HQNPEL-----------------AFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVG-TGGPPFV 156 (478)
Q Consensus 96 ~~~~l~~l~~~L-~~iPs~-----------------s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g-~~~~p~v 156 (478)
..+++++++++| ++|||+ +++|.++++||.++|+++||+++... ..|+++++. .+++|+|
T Consensus 30 ~~~~~~~~l~~L~v~i~s~s~~~~~~~~~g~~r~~~s~~e~~~~~~l~~~l~~~G~~v~~d~-~gnvia~~~g~~~~~~i 108 (474)
T 2v8h_A 30 ASGRLNQTILETGSQFGGVARWGQESHEFGMRRLAGTALDGAMRDWFTNECESLGCKVKVDK-IGNMFAVYPGKNGGKPT 108 (474)
T ss_dssp CTTHHHHHHHHHHHHTTEECCCSSSTTCCEECCCTTSHHHHHHHHHHHHHHHHTTCEEEEBT-TCCEEEEECCSSCCSCE
T ss_pred CHHHHHHHHHHHhhhcCCccccccccccCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEEec-CceEEEEECCCCCCCeE
Confidence 357789999999 999987 46889999999999999999987643 347999994 4445799
Q ss_pred EEEEccccccCCCCCCCCcccccCCeEEeCcchHHHHHHHHHHHHHHhcCCCCC--------CCccCC----C--cHHHH
Q 011730 157 ALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLK--------PAEEAG----N--GAKRM 222 (478)
Q Consensus 157 ~~~aHlDvVP~~~~~~~Pf~~~~~G~~~g~G~dg~~a~~l~aa~~L~~~~~~l~--------~dEE~g----~--G~~~l 222 (478)
+|+|||||||.+++ .+..++++++|+|++.|++.+.+++ ++||.+ + |++.+
T Consensus 109 ~l~~H~DtVp~~g~---------------~D~k~gvaa~L~a~~~L~~~~~~~~~~v~lif~~dEE~~~~~~g~~Gs~~l 173 (474)
T 2v8h_A 109 ATGSHLDTQPEAGK---------------YDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNAEGARFARSCTGSSVW 173 (474)
T ss_dssp EEEECCCCCSSBCS---------------STTHHHHHHHHHHHHHHHHHTCCCSSCEEEEECTTCSCSSSSCTTHHHHHH
T ss_pred EEEEecccCCCCCC---------------cCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccCCCCCCCcccHHHH
Confidence 99999999997532 1223788899999999998765432 999973 2 78877
Q ss_pred HH---------------------------cCCC---------CCCcEEEEEecCCCCCcc----eEEeecccccceeeEE
Q 011730 223 MA---------------------------DGAL---------EDVEAIFAVHVSHEHPTG----VIGSRPGPLLAGCGFF 262 (478)
Q Consensus 223 ~~---------------------------~g~~---------~~~D~~i~~~~~~~~~~g----~i~~~~g~~~~g~~~~ 262 (478)
.. .|+. +++|+.+.+|..++...+ ...+..+ .+|..++
T Consensus 174 ~~~~~~~~~~~~~d~~~~dg~~~~e~l~~~G~~~~~~~~~~~e~~~~~~~lHi~~g~~l~~~g~~~~i~~~--~~G~~~~ 251 (474)
T 2v8h_A 174 SHDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG--VQAYNWQ 251 (474)
T ss_dssp TTSSCHHHHHTCBCSSCSSCCBHHHHHHHHTCCCSBCSCTTTSCCSEEEEEEECCSSHHHHTTCSEEEEEE--ECEEEEE
T ss_pred HhccCHhhhhhhcccccccCccHHHHHHhcCCcccccccccccchhhheeeeeccCccccccCCcceeEEe--ecceEEE
Confidence 53 1221 357888888865432111 1122222 2478899
Q ss_pred EEEEEeecCCCCC-CC-CCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCC-CccceecCcEEEEEEEeccChH
Q 011730 263 HAVISGKKGGAAN-PH-RSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNT 339 (478)
Q Consensus 263 ~i~v~G~~~Has~-p~-~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG-~~~NvIP~~a~~~~diR~~p~~ 339 (478)
+|+++|+++|||. |+ .|.|||..+++++..|+.+..+. ..+++++.|+|| .+.|+||++|++.+++|+++.+
T Consensus 252 ~i~v~G~~~Hsg~~P~~~g~nAi~~~a~~i~~l~~~~~~~-----~~t~~vg~i~gG~~~~NvIP~~a~~~~diR~~~~~ 326 (474)
T 2v8h_A 252 KVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRH-----NGLFTCGIIDAKPYSVNIIPGEVSFTLDFRHPSDD 326 (474)
T ss_dssp EEEEECCCEETTTCCGGGCCCHHHHHHHHHHHHHHHHHHT-----TCEEECCCEEEESCCTTEECSEEEEEEEEEESCHH
T ss_pred EEEEEeecCCCCCCCcccCCCHHHHHHHHHHHHHHHHhhc-----CCEEEEEEEEecCCCCceeCCEEEEEEEecCCChH
Confidence 9999999999994 97 79999999999999998875432 468999999998 8999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhh---cCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcC-C-CcccccCCCCccchHH
Q 011730 340 SFYQLLQRIEEVIVEQARV---FRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLG-P-MNYRVVPPMMGAEDFS 414 (478)
Q Consensus 340 ~~~~i~~~i~~~~~~~~~~---~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G-~-~~~~~~~~~~g~tD~~ 414 (478)
+.+++.++|++++++.+.. ++++++++... .++++.+|+++++.+++++++. | . ++. ...+++++|++
T Consensus 327 ~~~~i~~~i~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~d~~l~~~~~~a~~~~-G~~~~~~--~~~~~ggtD~~ 399 (474)
T 2v8h_A 327 VLATMLKEAAAEFDRLIKINDGGALSYESETLQ----VSPAVNFHEVCIECVSRSAFAQ-FKKDQVR--QIWSGAGHDSC 399 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTCCCEEEEEEEE----EECCEECCHHHHHHHHHHHHHH-SCGGGEE--EEEESSCCTHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCcEEEEEEec----CCCCccCCHHHHHHHHHHHHHc-CCCCcce--ecCCcCCccHH
Confidence 9999999999999988766 78888887652 4567778999999999999996 7 5 432 35678999999
Q ss_pred HHHHhcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHhh
Q 011730 415 FYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 469 (478)
Q Consensus 415 ~~~~~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~~ 469 (478)
+|++.+|+++.|++... ..+|+++|+++++++.+++++|+.++.+++..
T Consensus 400 ~~~~~~P~~~~fgp~~~------~~~H~p~E~i~~~~l~~~~~~~~~~l~~l~~~ 448 (474)
T 2v8h_A 400 QTAPHVPTSMIFIPSKD------GLSHNYYEYSSPEEIENGFKVLLQAIINYDNY 448 (474)
T ss_dssp HHTTTSCEEEEEECCGG------GCCSSTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCEEEEEeCCCC------CCCCCccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99888998765544322 35999999999999999999999999999874
No 26
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}
Probab=100.00 E-value=5e-40 Score=347.05 Aligned_cols=340 Identities=16% Similarity=0.129 Sum_probs=256.9
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEcC--C--CCcEEEEEEccccccCCC---
Q 011730 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT--G--GPPFVALRADMDALPIQE--- 169 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~--~--~~p~v~~~aHlDvVP~~~--- 169 (478)
.+++++++++|++|||+|++|.++++||.++|+++|++++++. ..|+++++++ + ++|+|+|+|||||||..+
T Consensus 13 ~~~~~~~~~~L~~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~-~~nv~a~~~g~~g~~~~~~v~l~aH~D~vp~~~~~~ 91 (490)
T 3mru_A 13 PAPLWQFFDKICSIPHPSKHEEALAQYIVTWATEQGFDVRRDP-TGNVFIKKPATPGMENKKGVVLQAHIDMVPQKNEDT 91 (490)
T ss_dssp SHHHHHHHHHHHHSCCBTTCCTTHHHHHHHHHHHTTCEEEECT-TCCEEEEECCCTTCTTCCCEEEEEECCBCCCBCTTS
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCCEEEEcC-CCeEEEEEcCCCCCCCCCeEEEEeccCCCCCCCCCc
Confidence 6789999999999999999999999999999999999987643 4589999943 2 469999999999999863
Q ss_pred ---CCCCCcccc-cCCeEEeCcc----h--HHHHHHHHHHHHHHhcCC---CC----CCCccCC-CcHHHHHHcCCCCCC
Q 011730 170 ---AVEWEYKSK-VAGKMHACGH----D--AHVAMLIGAAKILKSREH---LL----KPAEEAG-NGAKRMMADGALEDV 231 (478)
Q Consensus 170 ---~~~~Pf~~~-~~G~~~g~G~----d--g~~a~~l~aa~~L~~~~~---~l----~~dEE~g-~G~~~l~~~g~~~~~ 231 (478)
|+.+||++. .+|++||||+ | +++|++|+++ ++... .+ .++||.+ .|++.+++.. + +.
T Consensus 92 ~~~w~~~p~~~~~~~g~l~g~G~~lgaD~k~g~a~~l~~l---~~~~~~~~~v~~~~~~~EE~g~~Ga~~~~~~~-~-~~ 166 (490)
T 3mru_A 92 DHDFTQDPIQPYIDGEWVTAKGTTLGADNGIGMASCLAVL---ASKEIKHGPIEVLLTIDEEAGMTGAFGLEAGW-L-KG 166 (490)
T ss_dssp CCCTTTCCCCEEEETTEEEETTBCCCHHHHTTHHHHHHHH---HCSSCCCCSEEEEEESCSSSTTGGGGTCCSSS-C-CS
T ss_pred ccccccCCceEEeeCCeEecCCCccCCCCHHHHHHHHHHH---HhCCCCCCCEEEEEEcccccccHhHHHhhhcc-c-CC
Confidence 566799875 5799999999 5 4455555443 32221 11 1999987 6888887653 3 57
Q ss_pred cEEEEEecCCC--CCcceEEee---------cccccceeeEEEEEEEe-ecCCCCC-CCCCC-CHHHHHHHHHHHHHhhh
Q 011730 232 EAIFAVHVSHE--HPTGVIGSR---------PGPLLAGCGFFHAVISG-KKGGAAN-PHRSV-DPVLAASAAVISLQGLV 297 (478)
Q Consensus 232 D~~i~~~~~~~--~~~g~i~~~---------~g~~~~g~~~~~i~v~G-~~~Has~-p~~g~-NAi~~~~~~i~~l~~l~ 297 (478)
|+++..++... ...|+.+.. .....+|..+++|+++| +++|+|. |+.|+ |||..++++|..|++.
T Consensus 167 ~~~~~~d~~~~g~~~~g~~~g~~~~~~~~~~~~~~~~g~~~~~i~v~G~~~gHs~~~p~~g~~nai~~~~~~l~~l~~~- 245 (490)
T 3mru_A 167 DILLNTDSEQEGEVYMGCAGGIDGAMTFDITRDAIPAGFITRQLTLKGLKGGHSGCDIHTGRGNANKLIGRFLAGHAQE- 245 (490)
T ss_dssp SEEEECCCCCTTCCEEEECEEEEEEEEEECCEECCCTTEEEEEEEEECCCCEETTTSSSSCCCCHHHHHHHHHHHHTTT-
T ss_pred CEEEEcCCCCCCeEEEecCCccceEEEeeeeeeccCCCceEEEEEEECCCCcccccccccCCcCHHHHHHHHHHHHHhc-
Confidence 88888875321 111111000 01234578899999999 9999995 99999 9999999999998862
Q ss_pred hcccCCCCCcEEEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhh-------------------
Q 011730 298 SREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARV------------------- 358 (478)
Q Consensus 298 ~~~~~~~~~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~------------------- 358 (478)
.+++++.|+||.+.|+||++|++.+++|..+.+..+++.+++.+.++.....
T Consensus 246 ---------~~~~v~~i~gG~~~NvIP~~a~~~~~iR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 316 (490)
T 3mru_A 246 ---------LDLRLVEFRGGSLRNAIPREAFVTVALPAENQDKLAELFNYYTELLKTELGKIETDIVTFNEEVATDAQVF 316 (490)
T ss_dssp ---------TTCEEEEEEECSCTTEECCCEEEEEEEEGGGHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEEECCCCCCEE
T ss_pred ---------CcEEEEEEECCCCCcccCCccEEEEEECcccHHHHHHHHHHHHHHHHHHhhccCCCeEEEEEecCCccccC
Confidence 2478999999999999999999999999877777666666666555543322
Q ss_pred -------------------------------------------------------------------------cCCeeEE
Q 011730 359 -------------------------------------------------------------------------FRCSATV 365 (478)
Q Consensus 359 -------------------------------------------------------------------------~g~~~ev 365 (478)
+|.++++
T Consensus 317 ~~~~~~~~i~~l~~~~~G~~~~~~~~~g~v~~S~n~gv~~~~~~~~~~~~~~R~~~~~~~~~i~~~l~~~~~~~g~~~~~ 396 (490)
T 3mru_A 317 AIADQQRFIAALNACPNGVMRMSDEVEGVVETSLNVGVITTEENKVTVLCLIRSLIDSGRSQVEGMLQSVAELAGAQIEF 396 (490)
T ss_dssp CHHHHHHHHHHHHHSCCEEEEECTTTTSCEEEEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHCCCccceeccccCCCeeEEEEEEEEEEeCCEEEEEEEcCCCCchHHHHHHHHHHHHHHHcCCeEEe
Confidence 2333333
Q ss_pred EEecCCCCCCCCc--cCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHHhcccc-eEEecccCCCCCCCCCCCC
Q 011730 366 DFFDKGNTVYPPT--VNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEVVPAA-FYYIGIKNETLGSIHTGHS 442 (478)
Q Consensus 366 ~~~~~~~~~~~~~--~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~iP~~-~~~~G~~~~~~~~~~~~H~ 442 (478)
.. .||++ ..|+++++.+++++++.+|.++. ...+.+++|++.|.+.+|.+ +..+|++. .++|+
T Consensus 397 ~~------~~p~~~~~~d~~lv~~l~~a~~~~~G~~~~--~~~~ggg~d~~~~~~~~p~~~~v~fGp~~------~~~H~ 462 (490)
T 3mru_A 397 SG------AYPGWKPDADSEIMAIFRDMYEGIYGHKPN--IMVIHAGLECGLFKEPYPNMDMVSFGPTI------KFPHS 462 (490)
T ss_dssp EE------EECCBCCCTTCHHHHHHHHHHHTTSSSCCC--CEEESSCCHHHHTTSSCTTCEEEECCCCE------ESTTS
T ss_pred cC------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCe--EEEEEecHHHHHHHHhCCCCCEEEECCCC------CCCCC
Confidence 21 23333 35679999999999998897653 46778999999998877752 33456653 35999
Q ss_pred CCcccCcCchHHHHHHHHHHHHHH
Q 011730 443 PYFMIDEDVLPVGAAVHATIAERF 466 (478)
Q Consensus 443 ~dE~i~~~~l~~~~~i~a~~~~~l 466 (478)
|||+++++++.+++++|.+++.++
T Consensus 463 p~E~v~i~~l~~~~~~l~~~l~~l 486 (490)
T 3mru_A 463 PDEKVKIDTVQLFWDQMVALLEAI 486 (490)
T ss_dssp TTCEEEHHHHHHHHHHHHHHHHHC
T ss_pred CCccccHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998876
No 27
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1
Probab=100.00 E-value=2.6e-39 Score=340.16 Aligned_cols=353 Identities=15% Similarity=0.100 Sum_probs=262.5
Q ss_pred HHHHhcCcchHHHHHHHHHHhhcCCCCCcch------------HHHHHHHHHHHHhCCCcEEeccCCceEEEEEcCCCCc
Q 011730 87 VMELARRPETVDWLKSVRRTIHQNPELAFQE------------FETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPP 154 (478)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~~L~~iPs~s~~E------------~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~~~p 154 (478)
+.+++ +++++++++++++|++|||+|++| .++++||.++|+++||+++.. +..++++.+|.+ +|
T Consensus 5 ~~~~~--~~~~~~~~~~l~~l~~ips~s~~~~~~~~~p~~~~~~~~~~~l~~~l~~~G~~~~~~-~~~~~~~~~g~~-~~ 80 (470)
T 1lfw_A 5 FKELA--EAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENF-ANYAGRVNFGAG-DK 80 (470)
T ss_dssp HHHHH--HTTHHHHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEE-TTTEEEEEECCC-SS
T ss_pred HHHHH--HHhHHHHHHHHHHHcCCCCcCCCccccccCCCcHHHHHHHHHHHHHHHHcCCeEEEe-cCeEEEEEeCCC-CC
Confidence 56777 788999999999999999999877 689999999999999998764 446788887543 68
Q ss_pred EEEEEEccccccCCC-CCCCCcccc--cCCeEEeCc-ch--HHHHHHHHHHHHHHhcCCCCC--------CCccCC-CcH
Q 011730 155 FVALRADMDALPIQE-AVEWEYKSK--VAGKMHACG-HD--AHVAMLIGAAKILKSREHLLK--------PAEEAG-NGA 219 (478)
Q Consensus 155 ~v~~~aHlDvVP~~~-~~~~Pf~~~--~~G~~~g~G-~d--g~~a~~l~aa~~L~~~~~~l~--------~dEE~g-~G~ 219 (478)
+|+|++||||||.++ |+.+||++. .+|++|||| +| ++++++|+|++.|++.+.+++ ++||.+ .|+
T Consensus 81 ~i~l~~H~D~vp~~~~w~~~Pf~~~~~~~g~l~grG~~D~K~~~a~~l~a~~~l~~~~~~~~~~i~~i~~~~EE~g~~G~ 160 (470)
T 1lfw_A 81 RLGIIGHMDVVPAGEGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEETNWVGI 160 (470)
T ss_dssp EEEEEEECCBCCCCSCCSSCTTSCEECTTCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCTTTTCHHH
T ss_pred eEEEEEeecccCCCCCccCCCcceeEeeCCEEECCCcccChHHHHHHHHHHHHHHHcCCCCCCCEEEEEecCcccCCccH
Confidence 999999999999876 688899986 589999999 45 899999999999998765543 999986 489
Q ss_pred HHHHHcCCCCC----CcE---EEEEecCC--------CCC-cce---EEeeccc--------------------------
Q 011730 220 KRMMADGALED----VEA---IFAVHVSH--------EHP-TGV---IGSRPGP-------------------------- 254 (478)
Q Consensus 220 ~~l~~~g~~~~----~D~---~i~~~~~~--------~~~-~g~---i~~~~g~-------------------------- 254 (478)
+.+++++...+ +|. ++..+++. +.+ .|. .....|.
T Consensus 161 ~~~~~~~~~~~~~~~~D~~~~~~~ge~g~~~~~l~~~~~~~~g~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~ 240 (470)
T 1lfw_A 161 DYYLKHEPTPDIVFSPDAEYPIINGEQGIFTLEFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYE 240 (470)
T ss_dssp HHHHHHSCCCSEEEESSEESSEEEEECEEEEEEEEECCCCCCCSBEEEEEEECSBTTBCCSEEEEEEECSCHHHHHHHHH
T ss_pred HHHHHhCcCCcEEEEeCCCceEEEeccceEEEEEEEccCCcCCCcceeeeecCCcCCcccccceEEecccchHHHHHHHH
Confidence 99988754311 233 22222110 000 000 0000000
Q ss_pred ------ccceee-----EEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHH------hhh---hcc--------------
Q 011730 255 ------LLAGCG-----FFHAVISGKKGGAANPHRSVDPVLAASAAVISLQ------GLV---SRE-------------- 300 (478)
Q Consensus 255 ------~~~g~~-----~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~------~l~---~~~-------------- 300 (478)
..+|.. +++|+++|+++|++.|+.|+||+..+++++..|+ .+. .+.
T Consensus 241 ~~~~~~~~~G~~~~~~~~~~i~v~G~~~Ha~~P~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (470)
T 1lfw_A 241 SFLADKELDGSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLGIFH 320 (470)
T ss_dssp HHHHHHTCEEEEEEETTEEEEEEECBCCBTTCGGGSBCHHHHHHHHHTTSCBCHHHHHHHHHHHHTTTTCTTSTTTTCCC
T ss_pred HHhhhhccccceeecCCcEEEEEeecccCCCCCccCccHHHHHHHHHHhCCCcchhHHHHHHHHHhcCCCCcccccCCcc
Confidence 012333 7999999999999999999999999999998775 221 111
Q ss_pred cCC-CCCcEEEEEEEeCCCccceecCc-EEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCc
Q 011730 301 ANP-LDSQVVSVTYFNGGDHLDMIPDA-VVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPT 378 (478)
Q Consensus 301 ~~~-~~~~~~~v~~i~gG~~~NvIP~~-a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~ 378 (478)
..+ .+..+++++.++ .+|++ |++.+++|+++.++.+++.++++++++. +++ +++. ..+++.
T Consensus 321 ~~~~~~~~t~~~g~i~------~~p~~~a~~~~diR~~~~~~~~~i~~~i~~~~~~-----g~~--v~~~----~~~~~~ 383 (470)
T 1lfw_A 321 HDDLMGDLASSPSMFD------YEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSG-----ILD--VTYN----GFEEPH 383 (470)
T ss_dssp EETTTEECEEEEEEEE------EETTSCEEEEEEEEECTTCCHHHHHHHHHHHHTT-----TEE--EECS----CCBCCE
T ss_pred cccccccceEEEEEEE------EcCCceEEEEEEEecCCCCCHHHHHHHHHHHhcC-----CeE--EEEE----eCCCce
Confidence 001 133577777775 47999 9999999999999999999999998764 444 4433 234444
Q ss_pred --cCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHHhcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHH
Q 011730 379 --VNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGA 456 (478)
Q Consensus 379 --~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~ 456 (478)
..|+++++.+++++++++|.++. ...+.+++|++++. |++. +|+..+ +....+|+|||+++++++.+++
T Consensus 384 ~~~~d~~l~~~~~~a~~~~~g~~~~--~~~~~g~~d~~~~~---~~v~--~G~~~p--g~~~~~H~~~E~i~~~~l~~~~ 454 (470)
T 1lfw_A 384 YVPGSDPMVQTLLKVYEKQTGKPGH--EVVIGGGTYGRLFE---RGVA--FGAQPE--NGPMVMHAANEFMMLDDLILSI 454 (470)
T ss_dssp ECCTTCHHHHHHHHHHHHHHCCCCC--EEEESSCCGGGGST---TCEE--CCEECT--TCCCCTTSTTCEEEHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCCc--eeeecCHhHHHhCC---CeEE--ECCCCC--CCCCCCCCCCcceEHHHHHHHH
Confidence 35789999999999998897653 34567899999885 6543 455422 1235699999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 011730 457 AVHATIAERFLNE 469 (478)
Q Consensus 457 ~i~a~~~~~ll~~ 469 (478)
++|+.++.+|+.+
T Consensus 455 ~~~~~~~~~l~~~ 467 (470)
T 1lfw_A 455 AIYAEAIYELTKD 467 (470)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999865
No 28
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A
Probab=99.95 E-value=1.1e-27 Score=233.26 Aligned_cols=242 Identities=14% Similarity=0.137 Sum_probs=182.7
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEec--cCCceEEEEEcCCCCcEEEEEEccccccCCC---CC
Q 011730 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP--LAKTGIRAWVGTGGPPFVALRADMDALPIQE---AV 171 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~--~~~~~via~~g~~~~p~v~~~aHlDvVP~~~---~~ 171 (478)
.+++++++++|++|||+|++|.++++||.++|+++||+++.. ...+|++++++.+ +|+|+|+|||||||.++ |+
T Consensus 5 ~~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~nv~a~~g~~-~~~i~l~~H~D~vp~~~~~~w~ 83 (268)
T 3t68_A 5 DSPVLALAKELISRQSVTPADAGCQDLMIERLKALGFEIESMVFEDTTNFWARRGTQ-SPLFVFAGHTDVVPAGPLSQWH 83 (268)
T ss_dssp CCHHHHHHHHHHTSCCBTTCCTTHHHHHHHHHHHTTCEECCCEETTEEC-CEEECSS-SCEEEEEEECCBCCCCCGGGCS
T ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHCCCeEEEEecCCccEEEEEeCCC-CCeEEEEccccccCCCCcccCC
Confidence 468899999999999999999999999999999999987653 2457899998543 78999999999999865 46
Q ss_pred CCCcccc-cCCeEEeCcch---HHHHHHHHHHHHHHhcCCCCC--------CCccCCC--cHHHHHHcC--CCCCCcEEE
Q 011730 172 EWEYKSK-VAGKMHACGHD---AHVAMLIGAAKILKSREHLLK--------PAEEAGN--GAKRMMADG--ALEDVEAIF 235 (478)
Q Consensus 172 ~~Pf~~~-~~G~~~g~G~d---g~~a~~l~aa~~L~~~~~~l~--------~dEE~g~--G~~~l~~~g--~~~~~D~~i 235 (478)
..||.+. .+|++||||+. +++++++.|++.|++.+.+++ ++||.++ |++.+++.. ...++|++|
T Consensus 84 ~~pf~~~~~~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~~Ga~~~~~~~~~~~~~~d~~i 163 (268)
T 3t68_A 84 TPPFEPTVIDGFLHGRGAADMKGSLACMIVAVERFIAEHPDHQGSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCI 163 (268)
T ss_dssp SCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCTTSSSCCHHHHHHHHHHHTTCCCCEEE
T ss_pred CCCCccEEECCEEEecCcccchHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCccCcccCHHHHHHHHHhcCCCCCEEE
Confidence 7799975 68999999983 888899999999987654432 9999875 999887642 123689999
Q ss_pred EEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEe
Q 011730 236 AVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFN 315 (478)
Q Consensus 236 ~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~ 315 (478)
++||+.....+. .+.+ |+.+.
T Consensus 164 ~~ept~~~~~~~-------------~i~~---g~~G~------------------------------------------- 184 (268)
T 3t68_A 164 VGEPSSTLAVGD-------------VVKN---GRRGG------------------------------------------- 184 (268)
T ss_dssp ECSCCBSSSTTS-------------EEEE---CCGGG-------------------------------------------
T ss_pred EeCCCCCccCCc-------------eeEE---ecCCC-------------------------------------------
Confidence 999864321111 0111 11000
Q ss_pred CCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHh
Q 011730 316 GGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDL 395 (478)
Q Consensus 316 gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 395 (478)
|...+++++++.+++++++.
T Consensus 185 ------------------------------------------------------------p~~~~~~~l~~~l~~a~~~~ 204 (268)
T 3t68_A 185 ------------------------------------------------------------GFLTDTGELLAAVVAAVEEV 204 (268)
T ss_dssp ------------------------------------------------------------GTSCCCCHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------------cccCCchHHHHHHHHHHHHH
Confidence 01112346999999999986
Q ss_pred cCCCcccccCCCCccchHHHHHHh-cccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHh
Q 011730 396 LGPMNYRVVPPMMGAEDFSFYSEV-VPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLN 468 (478)
Q Consensus 396 ~G~~~~~~~~~~~g~tD~~~~~~~-iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~ 468 (478)
+|.++. ...++|++|++++++. +|++. ++++. ...|+++|+++++++.++++++.+++.+|++
T Consensus 205 ~gi~~~--~~~sgggtD~~~~~~~g~p~~~--~~~~~------~~~Hs~~E~v~~~d~~~~~~vl~~~l~~l~~ 268 (268)
T 3t68_A 205 NHQAPA--LLTTGGTSDGRFIAQMGAQVVE--LGPVN------ATIHKVNECVRIADLEKLTDMYQKTLNHLLG 268 (268)
T ss_dssp HSSCCE--EESSCCCHHHHHHHHHTCEEEE--CCSBC------TTTTSTTCEEEHHHHHHHHHHHHHHHHHHHC
T ss_pred hCCCcE--EecCccccHHHHHHhcCCCEEE--EeeCC------CCCCCccccccHHHHHHHHHHHHHHHHHHhC
Confidence 687653 2456789999999876 55543 35543 2479999999999999999999999999874
No 29
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}
Probab=99.95 E-value=1.8e-26 Score=224.94 Aligned_cols=244 Identities=15% Similarity=0.193 Sum_probs=181.1
Q ss_pred chHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEecc--CCceEEEEEcCCCCcEEEEEEccccccCCC---
Q 011730 95 ETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL--AKTGIRAWVGTGGPPFVALRADMDALPIQE--- 169 (478)
Q Consensus 95 ~~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~--~~~~via~~g~~~~p~v~~~aHlDvVP~~~--- 169 (478)
.+.+++++++++|++|||+|++|.++++||.++|+++||+++... ..+|+++++++ ++|+|+|+|||||||.++
T Consensus 3 ~~~~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~nv~a~~g~-~~~~i~l~~H~D~vp~~~~~~ 81 (269)
T 4h2k_A 3 AMKEKVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFNDTLNLWAKHGT-SEPVIAFAGHTDVVPTGDENQ 81 (269)
T ss_dssp HHHHHHHHHHHHHHTSCCBTTCCTTHHHHHHHHHHTTTCEEEECCBTTBCEEEEEECS-SSCEEEEEEECCBCCCCCGGG
T ss_pred chHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcCCceEEEEEeCC-CCCEEEEEeeecccCCCCccc
Confidence 356789999999999999999999999999999999999987642 45799999854 378999999999999865
Q ss_pred CCCCCcccc-cCCeEEeCcch---HHHHHHHHHHHHHHhcCCCCC--------CCccCCC--cHHHHHHcC--CCCCCcE
Q 011730 170 AVEWEYKSK-VAGKMHACGHD---AHVAMLIGAAKILKSREHLLK--------PAEEAGN--GAKRMMADG--ALEDVEA 233 (478)
Q Consensus 170 ~~~~Pf~~~-~~G~~~g~G~d---g~~a~~l~aa~~L~~~~~~l~--------~dEE~g~--G~~~l~~~g--~~~~~D~ 233 (478)
|+..||.+. ++|++||||+. +++++++.|++.|++.+.+++ ++||.+. |++.+++.. ...++|+
T Consensus 82 w~~~pf~~~~~~g~~~grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~Ga~~~~~~~~~~~~~~d~ 161 (269)
T 4h2k_A 82 WSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDEKITY 161 (269)
T ss_dssp CSSCTTSCCEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHHHHHHHTTCCCCE
T ss_pred ccCCCCCeEEECCEEEeCCcccChHHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCcccCHHHHHHHHHhcCCCCCE
Confidence 577799975 58999999984 788889999999987654432 9999875 999887631 1236899
Q ss_pred EEEEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEE
Q 011730 234 IFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTY 313 (478)
Q Consensus 234 ~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~ 313 (478)
+|+.||+.....+.. +..| + .|.
T Consensus 162 ~i~~Ept~~~~~~~~-i~~g---------------~--------~G~--------------------------------- 184 (269)
T 4h2k_A 162 CMVGEPSSAKNLGDV-VKNG---------------R--------RGG--------------------------------- 184 (269)
T ss_dssp EEECCCCBSSSTTSE-EECS---------------C--------TTC---------------------------------
T ss_pred EEEECCCCCCcCCce-eEEe---------------c--------ccc---------------------------------
Confidence 999998643221110 0111 1 111
Q ss_pred EeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHH
Q 011730 314 FNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAI 393 (478)
Q Consensus 314 i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 393 (478)
| +. ..++++++.+.++++
T Consensus 185 ----------------------------------------------G------~~----------~~~~~l~~~l~~aa~ 202 (269)
T 4h2k_A 185 ----------------------------------------------G------FL----------TKPGKLLDSITSAIE 202 (269)
T ss_dssp ----------------------------------------------C----------------------HHHHHHHHHHH
T ss_pred ----------------------------------------------c------cc----------CCCcHHHHHHHHHHH
Confidence 1 01 113568999999988
Q ss_pred HhcCCCcccccCCCCccchHHHHHHh-cccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHh
Q 011730 394 DLLGPMNYRVVPPMMGAEDFSFYSEV-VPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLN 468 (478)
Q Consensus 394 ~~~G~~~~~~~~~~~g~tD~~~~~~~-iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~ 468 (478)
+..|..+. ....+|++|+++++.. +|++. ++++. ..+|+++|+++++++.+++++|.+++.++++
T Consensus 203 ~~~gi~~~--~~~~gggtDa~~~~~~g~p~~~--~~~~~------~~~Hs~~E~v~~~d~~~~~~ll~~~l~~l~~ 268 (269)
T 4h2k_A 203 ETIGITPK--AETGGGTSDGRFIALMGAEVVE--FGPLN------STIHKVNECVSVEDLGKCGEIYHKMLVNLLD 268 (269)
T ss_dssp HHHSCCCE--EECC--CHHHHHHHTTTCEEEE--CCSBC------TTTTSTTCEEEHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhCCCCE--EecCCCCchHHHHHhhCCCEEE--EEeCC------CCCcCCcccccHHHHHHHHHHHHHHHHHHhh
Confidence 76687654 2456789999999865 55554 34443 3479999999999999999999999988864
No 30
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=99.84 E-value=8.1e-21 Score=191.05 Aligned_cols=244 Identities=14% Similarity=0.116 Sum_probs=157.7
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEcCC-CCcEEEEEEcccccc---------------
Q 011730 103 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG-GPPFVALRADMDALP--------------- 166 (478)
Q Consensus 103 l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~-~~p~v~~~aHlDvVP--------------- 166 (478)
++++|+++||+|++|.+++++|.++|+++|++++.+. ..|+++++.+. ++|+|+|.||||+||
T Consensus 3 ~l~~L~~~~s~sg~e~~~~~~l~~~l~~~g~~~~~d~-~gnlia~~~g~~~~~~v~l~aH~D~v~~~v~~i~~~G~l~~~ 81 (340)
T 2fvg_A 3 YLKELSMMPGVSGDEGKVRDFIKSKIEGLVDNLYTDV-LGNLIALKRGRDSSKKLLVSAHMDEVGFVVSKIEKDGKVSFL 81 (340)
T ss_dssp CHHHHHHSCCBTTCCHHHHHHHHHHHGGGSSEEEECT-TSCEEEEECCSEEEEEEEEEEECCBCEEEEEEECTTSCEEEE
T ss_pred HHHHHHcCCCCCCchHHHHHHHHHHHHhhCCEEEEeC-CCcEEEEecCCCCCceEEEEeccCcCcEEEEEECCCCEEEEE
Confidence 5788999999999999999999999999999987643 35899988432 358999999999999
Q ss_pred -CCCCCCCCccc------------------------------------------------cc-C-------------CeE
Q 011730 167 -IQEAVEWEYKS------------------------------------------------KV-A-------------GKM 183 (478)
Q Consensus 167 -~~~~~~~Pf~~------------------------------------------------~~-~-------------G~~ 183 (478)
.+.|...||.. .. + |++
T Consensus 82 ~~Gg~~~~~~~~~~v~v~~~~g~i~~~~~h~~~~~~~~~~~~~~l~id~g~~s~~e~~~~i~~gd~v~~~~~~~~~~~~i 161 (340)
T 2fvg_A 82 PVGGVDPRILPGKVVQVKNLKGVIGYRPIHLQRDEENTPPRFENLRIDFGFSSADEAKKYVSIGDYVSFVSDYIEKNGRA 161 (340)
T ss_dssp EESCCCGGGCTTCEEEETTEEEEEEECC-----------CCSTTEEEECSCSSHHHHHTTCCTTCEEEECCCCEEETTEE
T ss_pred eeCCcccccccCCEEEECcEEEEEcCCCccccchhhccCCCcccEEEEeCCCCHHHHHhhCCCCCEEEEccCceeecCEE
Confidence 45565556544 11 3 889
Q ss_pred EeCcch--HHHHHHHHHHHHHHhcCCCC----CCCccCC-CcHHHHHHcCCCCCCcEEEEEecCCCCCcceEEeeccccc
Q 011730 184 HACGHD--AHVAMLIGAAKILKSREHLL----KPAEEAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLL 256 (478)
Q Consensus 184 ~g~G~d--g~~a~~l~aa~~L~~~~~~l----~~dEE~g-~G~~~l~~~g~~~~~D~~i~~~~~~~~~~g~i~~~~g~~~ 256 (478)
||+..| ++++++|.+++.+++....+ ..+||.| .|++.+.+. + .+|++|+.+++..
T Consensus 162 ~gra~D~k~g~a~~l~a~~~l~~~~~~i~~~~~~~EE~G~~G~~~~~~~--~-~~~~~i~~d~~~~-------------- 224 (340)
T 2fvg_A 162 VGKAFDDRAGCSVLIDVLESGVSPAYDTYFVFTVQEETGLRGSAVVVEQ--L-KPTCAIVVETTTA-------------- 224 (340)
T ss_dssp EESCHHHHHHHHHHHHHHHTCCCCSEEEEEEEECCCC-----CHHHHHH--H-CCSEEEEEEEEEE--------------
T ss_pred eeccCccHHHHHHHHHHHHHhhccCCcEEEEEEcccccchhhhHHHhhc--c-CCCEEEEEecccC--------------
Confidence 999555 77888888887775111111 1999977 488877663 2 4789998885320
Q ss_pred ceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCCCccceecCcEEEEEEEecc
Q 011730 257 AGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAF 336 (478)
Q Consensus 257 ~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~ 336 (478)
+ ++.|+++|++.|+.|.|++..+ +..+..
T Consensus 225 -~------~~~G~~~h~~~~~~G~g~~i~~---------------------------~~~~~~----------------- 253 (340)
T 2fvg_A 225 -G------DNPELEERKWATHLGDGPAITF---------------------------YHRGYV----------------- 253 (340)
T ss_dssp -C------SCSTTCCSSSSCCTTSCCEECS---------------------------CCSSSC-----------------
T ss_pred -C------CCCCCccccCCcccCCCcEEEE---------------------------eCCCCC-----------------
Confidence 0 3578888988898888854100 000000
Q ss_pred ChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHH
Q 011730 337 SNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFY 416 (478)
Q Consensus 337 p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~ 416 (478)
.++.+.+.+++++++ .|.+.. ......++||++.+
T Consensus 254 -------------------------------------------~~~~l~~~l~~~a~~-~gi~~~-~~~~~~ggtDa~~~ 288 (340)
T 2fvg_A 254 -------------------------------------------IPKEIFQTIVDTAKN-NDIPFQ-MKRRTAGGTDAGRY 288 (340)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHH-TTCCCE-ECCCC---------
T ss_pred -------------------------------------------CCHHHHHHHHHHHHH-cCCCeE-EEecCCCCccHHHH
Confidence 011233333333333 243322 11245689999998
Q ss_pred HH---hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHh
Q 011730 417 SE---VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLN 468 (478)
Q Consensus 417 ~~---~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~ 468 (478)
.. .+|+++++.|.. .+|+++|+++++++..++++|..++.+++.
T Consensus 289 ~~~~~GiP~v~~g~~~~--------~~Hs~~E~v~~~dl~~~~~ll~~~~~~l~~ 335 (340)
T 2fvg_A 289 ARTAYGVPAGVISTPAR--------YIHSPNSIIDLNDYENTKKLIKVLVEEGKI 335 (340)
T ss_dssp ----CCSCEEEEEEEEE--------ESSTTCEEEEHHHHHHHHHHHHHHHHHCHH
T ss_pred HhhCCCCcEEEeccccc--------ccCChhhcccHHHHHHHHHHHHHHHHhccc
Confidence 74 699987655432 399999999999999999999999998865
No 31
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=99.83 E-value=2.4e-20 Score=173.24 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhcCCCCCc--chHHHHHHHHHHHHhCCCcEEecc---CCceEEEEEc-CCC-CcEEEEEEccccccCCC
Q 011730 97 VDWLKSVRRTIHQNPELAF--QEFETSRLLRAELDRMEIGYKYPL---AKTGIRAWVG-TGG-PPFVALRADMDALPIQE 169 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s~--~E~~~a~~l~~~L~~~G~~v~~~~---~~~~via~~g-~~~-~p~v~~~aHlDvVP~~~ 169 (478)
.+++++++++|++|||+|+ +|.++++||.++|+++|++++... ++.|+++++. .++ .|+|+|+|||||||.++
T Consensus 9 ~~~~~~~l~~lv~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~g~~~~i~~~~g~~~~~~~ill~aH~DtVp~~~ 88 (198)
T 1q7l_A 9 EHPSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSILLNSHTDVVPVFK 88 (198)
T ss_dssp CCHHHHHHHHHHTSCCBTTSCCHHHHHHHHHHHHHHHTCEEEEEEEETTEEEEEEEECCSSTTSCEEEEEEECCBCCCCG
T ss_pred HHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHCCCeEEEEEcCCCCeEEEEEEccCCCCCCeEEEEeeecccCCCc
Confidence 4678999999999999998 689999999999999999987642 4568999984 333 48999999999999864
Q ss_pred --CCCCCcccc--cCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC--------CCccCC--CcHHHHHHcCCC--CC
Q 011730 170 --AVEWEYKSK--VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK--------PAEEAG--NGAKRMMADGAL--ED 230 (478)
Q Consensus 170 --~~~~Pf~~~--~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~--------~dEE~g--~G~~~l~~~g~~--~~ 230 (478)
|+..||.+. .+|++||||+ | ++++++|.|++.|++.+.+++ ++||.+ .|++.+++++.+ .+
T Consensus 89 ~~w~~~pf~~~~~~~g~l~GrGa~D~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~~Ga~~~~~~~~~~~~~ 168 (198)
T 1q7l_A 89 EHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALR 168 (198)
T ss_dssp GGCSSCTTTCCBCTTSEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCGGGTSTTTHHHHTTSHHHHTTC
T ss_pred ccCccCCCeeeEccCCEEEeCcchhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcccccCccccHHHHHHhHHhccCC
Confidence 577899876 3799999994 5 889999999999998765432 999986 599998876432 24
Q ss_pred CcEEE
Q 011730 231 VEAIF 235 (478)
Q Consensus 231 ~D~~i 235 (478)
+|+++
T Consensus 169 ~~~~i 173 (198)
T 1q7l_A 169 AGFAL 173 (198)
T ss_dssp EEEEE
T ss_pred cCEEE
Confidence 56666
No 32
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=99.82 E-value=1.5e-23 Score=208.01 Aligned_cols=316 Identities=14% Similarity=0.029 Sum_probs=163.1
Q ss_pred HHHHHHhhcCCCCCcchH-HHHHHHHHHHHhCCCcEEeccCCceEEEEEcCCCCcEEEEEEccccccCCCCCCCCccccc
Q 011730 101 KSVRRTIHQNPELAFQEF-ETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKV 179 (478)
Q Consensus 101 ~~l~~~L~~iPs~s~~E~-~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~~~p~v~~~aHlDvVP~~~~~~~Pf~~~~ 179 (478)
+++|++|++|||+|++|. .+++||.++|+++|++++++. ..|++++++++ +|+|+|.|||||||..... ...
T Consensus 12 ~elL~~Lv~ipS~sg~E~~~v~~~l~~~l~~~G~~v~~D~-~GNlia~~~g~-~p~lll~~H~Dtvp~~v~~-----~~~ 84 (354)
T 2wzn_A 12 WKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVDK-LGNVIAHFKGS-SPRIMVAAHMDKIGVMVNH-----IDK 84 (354)
T ss_dssp HHHHHHHHHSCCBTTCGGGTHHHHHHHHHHTTSSEEEECT-TCCEEEEECCS-SSEEEEEEECCBCEEEEEE-----ECT
T ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHHHHHcCCEEEEeC-CCeEEEEECCC-CceEEEEeccccCCCcCCe-----eec
Confidence 578999999999999885 689999999999999998753 35899999765 7899999999999843210 112
Q ss_pred CCeEEeCcch---HHHHHHHHHHHHHHhcCCC-------CCCCccCC-CcHHHHHHcCCCCCCcEEEEEecCCCCCcceE
Q 011730 180 AGKMHACGHD---AHVAMLIGAAKILKSREHL-------LKPAEEAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVI 248 (478)
Q Consensus 180 ~G~~~g~G~d---g~~a~~l~aa~~L~~~~~~-------l~~dEE~g-~G~~~l~~~g~~~~~D~~i~~~~~~~~~~g~i 248 (478)
+|.+++.+.+ +.+++. .++..+...+.. +..+||.+ .|.+.+.....+....+....+... .+
T Consensus 85 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-- 158 (354)
T 2wzn_A 85 DGYLHIVPIGGVLPETLVA-QRIRFFTEKGERYGVVGVLPPHLRRGQEDKGSKIDWDQIVVDVGASSKEEAEE---MG-- 158 (354)
T ss_dssp TSCEEEEEESSCCGGGGTT-CEEEEEETTEEEEEEECCCCGGGC---------CCGGGCCEECSCSSHHHHHH---TT--
T ss_pred CCceeeccCCCccHHHHHH-HHHHHhhccCCccceEEEeeeeeEecccccccchhhhhhhhhhcccchhhhhc---cc--
Confidence 4555544432 222111 111111111110 11666654 3544443332221111111000000 00
Q ss_pred EeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEE----EEEeCCCccceec
Q 011730 249 GSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSV----TYFNGGDHLDMIP 324 (478)
Q Consensus 249 ~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v----~~i~gG~~~NvIP 324 (478)
...+. .+......++.+...|++.+.. +...+..++..++++....... ...... +...++...|.++
T Consensus 159 -~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~ 230 (354)
T 2wzn_A 159 -FRVGT--VGEFAPNFTRLNEHRFATPYLD---DRICLYAMIEAARQLGDHEADI--YIVGSVQEEVGLRGARVASYAIN 230 (354)
T ss_dssp -CCTTC--EEEECCCCEECSSSEEECTTHH---HHHHHHHHHHHHHHCCCCSSEE--EEEEESCGGGTSHHHHHHHHHHC
T ss_pred -cccce--eeeeeeeeEeeccccccccccc---ccchhhhHHHHHHHHHhccccc--cccccceeeeeeecccccccccc
Confidence 01111 1233345566677777766544 4444444444444442111000 000111 1111233567777
Q ss_pred CcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHH-hcCCCcccc
Q 011730 325 DAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAID-LLGPMNYRV 403 (478)
Q Consensus 325 ~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~-~~G~~~~~~ 403 (478)
..+....+.+......... ......+........ ...++............ ..+..+ .
T Consensus 231 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~ 289 (354)
T 2wzn_A 231 PEVGIAMDVTFAKQPHDKG----------KIVPELGKGPVMDVG---------PNINPKLRAFADEVAKKYEIPLQV--E 289 (354)
T ss_dssp CSEEEEEEEEECCCTTSTT----------CCCCCTTSCCEEEES---------TTSCHHHHHHHHHHHHHTTCCCEE--E
T ss_pred cccceeeeeeeccccchhh----------hhheeeccccccccc---------cccCcchhhhhHHHHHHhcCCCce--E
Confidence 7777777776655432110 000011111111111 11223322222222222 223322 2
Q ss_pred cCCCCccchHHHHHH---hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHH
Q 011730 404 VPPMMGAEDFSFYSE---VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERF 466 (478)
Q Consensus 404 ~~~~~g~tD~~~~~~---~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~l 466 (478)
.....++||++++.. ++|++.+++|. ..+|+++|+++++++.+++++|.+++.+|
T Consensus 290 ~~~~~ggTDa~~~~~~~~Giptv~~G~g~--------~~~Ht~~E~v~i~dl~~~~~ll~~~i~~L 347 (354)
T 2wzn_A 290 PSPRPTGTDANVMQINKEGVATAVLSIPI--------RYMHSQVELADARDVDNTIKLAKALLEEL 347 (354)
T ss_dssp ECCSCCSSHHHHHHTSTTCCEEEEEEEEE--------BSTTSTTCEEEHHHHHHHHHHHHHHHHHC
T ss_pred EEecccccHHHHHHHhcCCCCEEEECccc--------CCCCcccEEEEHHHHHHHHHHHHHHHHhC
Confidence 356788999998752 58998865553 24899999999999999999999998876
No 33
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A
Probab=99.79 E-value=1.9e-18 Score=173.09 Aligned_cols=237 Identities=19% Similarity=0.132 Sum_probs=166.7
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEcCCCCcEEEEEEccccc--------------
Q 011730 100 LKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDAL-------------- 165 (478)
Q Consensus 100 l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~~~p~v~~~aHlDvV-------------- 165 (478)
+++++++|+++||+|++|.+++++|.++|+++|+ ++. +...|++++++++ .|+|+|.||||+|
T Consensus 4 ~~~~l~~l~~~~s~sg~e~~~~~~l~~~l~~~g~-~~~-d~~gnlia~~~~~-~~~i~l~aH~D~v~~~v~~i~~~G~l~ 80 (332)
T 2wyr_A 4 MIEKLKKFTQIPGISGYEERIREEIIREIKDFAD-YKV-DAIGNLIVELGEG-EERILFMAHMDEIGLLITGITDEGKLR 80 (332)
T ss_dssp HHHHHHHHHTSCCBTTCCHHHHHHHHHHHTTTCC-CEE-CTTCCEEEEEESS-SEEEEEEEECCBCEEEEEEECTTSCEE
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHHhhcCc-EEE-cCCCeEEEEecCC-CceEEEEeccCcccEEEEEECCCCeEE
Confidence 6789999999999999999999999999999999 765 4556899988543 6899999999999
Q ss_pred --cCCCCCC-------------------------------------------------------------------CCcc
Q 011730 166 --PIQEAVE-------------------------------------------------------------------WEYK 176 (478)
Q Consensus 166 --P~~~~~~-------------------------------------------------------------------~Pf~ 176 (478)
|.+.+.. .||.
T Consensus 81 ~~~~Gg~~~~~~~~~~v~v~~~~g~~~g~i~~~~~h~~~~~~~~~~~~~~~~id~g~~~~~~~~~~i~~Gd~~~~~~~~~ 160 (332)
T 2wyr_A 81 FRKVGGIDDRLLYGRHVNVVTEKGILDGVIGATPPHLSLERDKSVIPWYDLVIDIGAESKEEALELVKPLDFAVFKKHFS 160 (332)
T ss_dssp EEEESCCCGGGTTTEEEEEECSSCEEEEEECCCCTTC-----CCCCCGGGCCBBCSCSSHHHHHHHCCTTCEEEECCCCE
T ss_pred EEecCCcChhhccCCEEEEEcCCCCEEEEEcCCCcccChhhhccCCChHHEEEEeCCCCHHHHHhhCCCCCEEEEccccE
Confidence 4443211 1233
Q ss_pred cccCCeEEeCcch--HHHHHHHHHHHHHHhcCCCCC------CCccCCC-cHHHHHHcCCCCCCcEEEEEecCCCCCcce
Q 011730 177 SKVAGKMHACGHD--AHVAMLIGAAKILKSREHLLK------PAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHPTGV 247 (478)
Q Consensus 177 ~~~~G~~~g~G~d--g~~a~~l~aa~~L~~~~~~l~------~dEE~g~-G~~~l~~~g~~~~~D~~i~~~~~~~~~~g~ 247 (478)
...+|++|||..| +++++++.+++.|++.+.+.. .+||.|. |++.+... + .+|++|+.+++...
T Consensus 161 ~~~~~~i~gra~D~k~g~a~~l~a~~~l~~~~~~~~i~~~~~~~EE~G~~G~~~~~~~--~-~~~~~i~~d~~~~~---- 233 (332)
T 2wyr_A 161 VLNGKYVSTRGLDDRFGVVALIEAIKDLVDHELEGKVIFAFTVQEEVGLKGAKFLANH--Y-YPQYAFAIDSFACC---- 233 (332)
T ss_dssp EETTTEEECTTHHHHHHHHHHHHHHHTTTTSCCSSEEEEEEESCGGGTSHHHHHHTTT--C-CCSEEEEECCEECC----
T ss_pred EecCCeEEcccCCcHHHHHHHHHHHHHHhhcCCCceEEEEEECccccCcchHHHHhcc--c-CCCEEEEEeccccc----
Confidence 3356899999555 788888899888876543211 8999874 88877642 2 57999988854210
Q ss_pred EEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCCCccceecCcE
Q 011730 248 IGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAV 327 (478)
Q Consensus 248 i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~a 327 (478)
..+ + +.+. ++. |..
T Consensus 234 --~~p-----~---------------~~~~--------------------------lg~----------G~~-------- 247 (332)
T 2wyr_A 234 --SPL-----T---------------GDVK--------------------------LGK----------GPV-------- 247 (332)
T ss_dssp --SGG-----G---------------TTCC--------------------------TTS----------CCE--------
T ss_pred --CCC-----C---------------Ccee--------------------------eCC----------CCE--------
Confidence 000 1 0000 000 100
Q ss_pred EEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCcccccCCC
Q 011730 328 VIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVPPM 407 (478)
Q Consensus 328 ~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~~ 407 (478)
+.... . ....++++++.+++++++. |.+.. ....
T Consensus 248 -------------------------------------i~~~d---~---~~~~~~~l~~~l~~~~~~~-gi~~~--~~~~ 281 (332)
T 2wyr_A 248 -------------------------------------IRAVD---N---SAIYSRDLARKVWSIAEKN-GIEIQ--IGVT 281 (332)
T ss_dssp -------------------------------------EEEEC---S---SCBCCHHHHHHHHHHHHHT-TCCCE--EEEC
T ss_pred -------------------------------------EEEcC---C---CCCCCHHHHHHHHHHHHHc-CCCeE--EecC
Confidence 11111 0 2335788999999999884 76543 2344
Q ss_pred CccchHHHHHHhcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHH
Q 011730 408 MGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERF 466 (478)
Q Consensus 408 ~g~tD~~~~~~~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~l 466 (478)
.++||++.+..++|+++++.|. ..+|+++|+++++++..+++++..++.++
T Consensus 282 ~ggtDa~~~~~GiPtv~lg~~~--------~~~Hs~~E~v~~~dl~~~~~ll~~~~~~l 332 (332)
T 2wyr_A 282 GGGTDASAFQDRSKTLALSVPI--------KYLHSEVETLHLNDLEKLVKLIEALAFEL 332 (332)
T ss_dssp SSCCGGGGGTTTSEEEEEECEE--------BSCSSTTCEEEHHHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHcCCCEEEEcCCc--------CCCCChhhcccHHHHHHHHHHHHHHHHhC
Confidence 5899999987789998755442 24999999999999999999999988753
No 34
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4
Probab=99.77 E-value=1.4e-17 Score=169.43 Aligned_cols=249 Identities=16% Similarity=0.166 Sum_probs=171.1
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEc-CCCCcEEEEEEccccccC---------
Q 011730 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVG-TGGPPFVALRADMDALPI--------- 167 (478)
Q Consensus 98 ~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g-~~~~p~v~~~aHlDvVP~--------- 167 (478)
+++++++++|+++||+|++|.+++++|.++|+++|++++.+ ...|+++++. ..+.|+|+|.||||+||.
T Consensus 7 ~~~~~~l~~L~~~~s~sg~e~~~~~~l~~~l~~~g~~~~~d-~~gnlia~~~g~~~~~~vll~aH~D~v~~~v~~i~~~G 85 (373)
T 1vhe_A 7 DETLTMLKDLTDAKGIPGNEREVRQVMKSYIEPFADEVTTD-RLGSLIAKKTGAENGPKIMIAGHLDEVGFMVTQITDKG 85 (373)
T ss_dssp CHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHGGGCSEEEEC-TTCCEEEEEESSTTSCEEEEEEECCCCEEEEEEECTTS
T ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHhhCCEEEEc-CCCcEEEEecCCCCCceEEEEecCCcCCEEEEEECCCC
Confidence 46889999999999999999999999999999999998764 3458999874 324689999999999992
Q ss_pred ------------------------CCC-------CCCCc-----------------------------------------
Q 011730 168 ------------------------QEA-------VEWEY----------------------------------------- 175 (478)
Q Consensus 168 ------------------------~~~-------~~~Pf----------------------------------------- 175 (478)
.+. ...|+
T Consensus 86 ~l~~~~~Gg~~~~~~~~~~v~v~~~~g~~~g~i~~~~~h~~~~~~~~~~~~~~~l~id~g~~s~~~~~~~gi~~Gd~v~~ 165 (373)
T 1vhe_A 86 FIRFQTVGGWWAQVMLAQRVTIVTKKGEITGVIGSKPPHILSPEARKKSVEIKDMFIDIGASSREEALEWGVLPGDMIVP 165 (373)
T ss_dssp CEEEEEESCCCGGGTTTCEEEEEETTEEEEEEEECCCGGGSCTTTTTSCCCGGGCEEECSCSSHHHHHHTTCCTTCEEEE
T ss_pred eEEEEEeCCcchhhccCCEEEEEeCCCcEEEEEcCCCcccCchhhccCCCChhHeEEEecCCCHHHHHHcCCCCCCEEEE
Confidence 110 01121
Q ss_pred ----ccc-cCCeEEeCcch--HHHHHHHHHHHHHHhcCCCCC------CCccCCC-cHHHHHHcCCCCCCcEEEEEecCC
Q 011730 176 ----KSK-VAGKMHACGHD--AHVAMLIGAAKILKSREHLLK------PAEEAGN-GAKRMMADGALEDVEAIFAVHVSH 241 (478)
Q Consensus 176 ----~~~-~~G~~~g~G~d--g~~a~~l~aa~~L~~~~~~l~------~dEE~g~-G~~~l~~~g~~~~~D~~i~~~~~~ 241 (478)
... .+|++||++.| ++++++|.+++.|++.+.+.. .+||.|. |++.+... + .+|++|+.+++.
T Consensus 166 ~~~~~~~~~~~~i~gr~~D~k~g~a~~l~a~~~l~~~~~~~~v~~~~~~~EE~G~~G~~~~~~~--~-~~d~~i~~d~~~ 242 (373)
T 1vhe_A 166 HFEFTVMNNEKFLLAKAWDNRIGCAIAIDVLRNLQNTDHPNIVYGVGTVQEEVGLRGAKTAAHT--I-QPDIAFGVDVGI 242 (373)
T ss_dssp CCCCEECSSTTEEEETTHHHHHHHHHHHHHHHHHHTSCCSSEEEEEEESCCTTTSHHHHHHHHH--H-CCSEEEEEEEEE
T ss_pred ccccEEecCCCeEEeccCccHHHHHHHHHHHHHHhhcCCCceEEEEEECCcccChhhHHHHhcc--c-CCCEEEEEeccc
Confidence 111 15799999876 788889999999987543222 8999874 88777542 2 478999888642
Q ss_pred CCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCCCccc
Q 011730 242 EHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLD 321 (478)
Q Consensus 242 ~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG~~~N 321 (478)
. +. .. |. .|+.+. ..++ .|
T Consensus 243 ~---~~---~~-----g~---------------~~~~~~---------------------~~lg----------~G---- 261 (373)
T 1vhe_A 243 A---GD---TP-----GI---------------SEKEAQ---------------------SKMG----------KG---- 261 (373)
T ss_dssp C---CC---ST-----TC---------------CTTTCC---------------------CCTT----------SC----
T ss_pred c---CC---CC-----CC---------------cccccc---------------------cccC----------CC----
Confidence 1 00 00 10 121110 0000 01
Q ss_pred eecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCcc
Q 011730 322 MIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNY 401 (478)
Q Consensus 322 vIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~ 401 (478)
| .+.... . ....++++++.+++++++. |.+..
T Consensus 262 --~---------------------------------------~i~~~~---~---~~~~~~~l~~~l~~~a~~~-gi~~~ 293 (373)
T 1vhe_A 262 --P---------------------------------------QIIVYD---A---SMVSHKGLRDAVVATAEEA-GIPYQ 293 (373)
T ss_dssp --C---------------------------------------EEEEEE---T---TEECCHHHHHHHHHHHHHH-TCCCE
T ss_pred --c---------------------------------------eEEEeC---C---CCCCCHHHHHHHHHHHHHc-CCCeE
Confidence 0 011111 1 2346788999999999884 76543
Q ss_pred cccCCCCccchHHHH--HH-hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHh
Q 011730 402 RVVPPMMGAEDFSFY--SE-VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLN 468 (478)
Q Consensus 402 ~~~~~~~g~tD~~~~--~~-~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~ 468 (478)
. .....++||++.+ +. .+|++++++|. ..+|+++|+++++++..++++++.++.+++.
T Consensus 294 ~-~~~~~ggtDa~~~~~~~~GiPtv~lg~~~--------~~~Hs~~E~v~~~dl~~~~~ll~~~l~~l~~ 354 (373)
T 1vhe_A 294 F-DAIAGGGTDSGAIHLTANGVPALSITIAT--------RYIHTHAAMLHRDDYENAVKLITEVIKKLDR 354 (373)
T ss_dssp E-EEETTCCCTHHHHTTSTTCCCEEEEEEEE--------BSTTSSCEEEEHHHHHHHHHHHHHHHHHCCH
T ss_pred E-ecCCCCCccHHHHHHhCCCCcEEEEcccc--------ccCCChhheecHHHHHHHHHHHHHHHHHhcH
Confidence 1 1335689999999 44 59998865543 2489999999999999999999999988755
No 35
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4
Probab=99.73 E-value=4.7e-17 Score=164.10 Aligned_cols=236 Identities=17% Similarity=0.095 Sum_probs=153.6
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEcCC-CCcEEEEEEccccc----------
Q 011730 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG-GPPFVALRADMDAL---------- 165 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~-~~p~v~~~aHlDvV---------- 165 (478)
.+++++++++|++|||+|++|.++++||.++|+++|++++++ ...|+++++.+. +.|+|+|.||||||
T Consensus 5 ~~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~d-~~gnl~a~~~g~~~~~~ill~~H~Dtv~~~v~~i~~~ 83 (349)
T 2gre_A 5 TKETMELIKELVSIPSPSGNTAKIINFIENYVSEWNVETKRN-NKGALILTVKGKNDAQHRLLTAHVDTLGAMVKEIKPD 83 (349)
T ss_dssp HHHHHHHHHHHHTSCCBTTCCHHHHHHHHHHTTTSSSEEEEC-SSSCEEEEECCSEEEEEEEEEEECCBCEEEEEEECTT
T ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhCCEEEEe-cCCcEEEEecCCCCCceEEEEecccccceeEEEECCC
Confidence 678999999999999999999999999999999999998764 345899998433 35899999999999
Q ss_pred ------cCCCCCCCCccc--------------------------------------------------------------
Q 011730 166 ------PIQEAVEWEYKS-------------------------------------------------------------- 177 (478)
Q Consensus 166 ------P~~~~~~~Pf~~-------------------------------------------------------------- 177 (478)
|.+.|...||..
T Consensus 84 G~l~~~~~Gg~~~~~~~~~~v~i~~~~g~~~~g~i~~~~~~~h~~~~~~~~~~~~~~l~~~id~g~~~~~~~~~~gi~~g 163 (349)
T 2gre_A 84 GRLSLSMIGGFRWNSVEGEYCEIETSSGKTYTGTILMHQTSVHVYKDAGEAKRDEKNIEVRIDERVFSADEVRELGIEVG 163 (349)
T ss_dssp SCEEEEEESSCCGGGTTTCEEEEECTTSCEEEEEEECC-------------------CEEEESSCCCSHHHHHHTTCCTT
T ss_pred CeEEEEecCCCccccccCcEEEEEcCCCCEEEEEEeCCCCCccccchhccCCCCHHHceEEeccCCCCHHHHHHcCCCCC
Confidence 544443322210
Q ss_pred -----------ccCCeEEeCcch--HHHHHHHHHHHHHHhcCCCCC--------CCccCC-CcHHHHHHcCCCCCCcEEE
Q 011730 178 -----------KVAGKMHACGHD--AHVAMLIGAAKILKSREHLLK--------PAEEAG-NGAKRMMADGALEDVEAIF 235 (478)
Q Consensus 178 -----------~~~G~~~g~G~d--g~~a~~l~aa~~L~~~~~~l~--------~dEE~g-~G~~~l~~~g~~~~~D~~i 235 (478)
..+|++||++.| ++++++|.+++.+++.+.++. .+||.| .|++.+ ...+|++|
T Consensus 164 d~v~~~~~~~~~~~~~i~gr~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~G~~g~~~~-----~~~~~~~i 238 (349)
T 2gre_A 164 DFVSFDPRVQITESGYIKSRHLDDKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEIGYGGNSNI-----PEETVEYL 238 (349)
T ss_dssp CEEEECCCCEECTTSEEEESCCTTHHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC----CCCCCC-----CTTEEEEE
T ss_pred CEEEEccccEEccCCeEEEeeccchHHHHHHHHHHHHHHhccCCCCceEEEEEECcccCCchhhccc-----ccCCCEEE
Confidence 124788998776 888889999999987654332 899977 466644 12467888
Q ss_pred EEecCCCCCcceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEe
Q 011730 236 AVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFN 315 (478)
Q Consensus 236 ~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~ 315 (478)
+.+++.. + . |-..++.| ++
T Consensus 239 ~~D~~~~----------~-----~------------~p~~~~~g-----------------------------~~----- 257 (349)
T 2gre_A 239 AVDMGAL----------G-----D------------GQASDEYT-----------------------------VS----- 257 (349)
T ss_dssp EECCCCC----------S-----C------------C--CCTTS-----------------------------EE-----
T ss_pred EEecccc----------c-----C------------CCCCCCCc-----------------------------eE-----
Confidence 7764321 0 0 00000000 00
Q ss_pred CCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHh
Q 011730 316 GGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDL 395 (478)
Q Consensus 316 gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 395 (478)
+.... .. + ..++.+.+.+++++++.
T Consensus 258 -------------------------------------------------i~~~~---~~-~--~~~~~l~~~l~~~a~~~ 282 (349)
T 2gre_A 258 -------------------------------------------------ICAKD---SS-G--PYHYALRKHLVELAKTN 282 (349)
T ss_dssp -------------------------------------------------EEEEE---TT-E--ECCHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------EEEcc---CC-C--CCCHHHHHHHHHHHHHc
Confidence 01110 00 0 14677888888888874
Q ss_pred cCCCcccccCCCCccchHHHHHH---hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHH
Q 011730 396 LGPMNYRVVPPMMGAEDFSFYSE---VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAER 465 (478)
Q Consensus 396 ~G~~~~~~~~~~~g~tD~~~~~~---~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ 465 (478)
|.+... .....+++|.+.+.. ++|+++++++. ...|+ .|+++++++..+++++..++.+
T Consensus 283 -gi~~q~-~~~~ggGsDa~~~~~~~~GiPt~~lg~~~--------~~~Hs-~E~~~~~dl~~~~~ll~~~l~~ 344 (349)
T 2gre_A 283 -HIEYKV-DIYPYYGSDASAAIRAGFDVKHALIGAGI--------DSSHA-FERTHESSIAHTEALVYAYVMS 344 (349)
T ss_dssp -TCCEEE-EECSCC--------CCSSSCEEEEEEECC--------BSTTS-SEEEEHHHHHHHHHHHHHHHHS
T ss_pred -CCCcEE-eccCCCCccHHHHHHhCCCCcEEEeccCc--------ccccc-ceeccHHHHHHHHHHHHHHHhc
Confidence 765421 134568899988854 59998765543 24999 9999999999999999988753
No 36
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=99.73 E-value=4e-17 Score=164.35 Aligned_cols=244 Identities=16% Similarity=0.116 Sum_probs=155.8
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEcCCCCcEEEEEEcccccc-----------
Q 011730 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALP----------- 166 (478)
Q Consensus 98 ~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~~~p~v~~~aHlDvVP----------- 166 (478)
.++++++++|+++||+|++|.+++++|.++|+++|++++.+ ...|+++.+.+.+.|.|+|.||+|+|+
T Consensus 5 ~~~~~~l~~Lv~~~s~sg~e~~~~~~l~~~l~~~g~~~~~d-~~gnlia~~~g~~~~~i~l~aH~DtV~~~v~~i~~G~l 83 (346)
T 1vho_A 5 METGKLLMELSNLDGPSGYETNVVSYIKSVIEPFVDEAKTT-RHGSLIGYKKGKGIGKLAFFAHVDEIGFVVSKVEGQFA 83 (346)
T ss_dssp CCHHHHHHHHHHSCCBTTCCHHHHHHHHHHHGGGCSEEEEC-TTSCEEEEECCSSSCEEEEEEECCBCCEEEEEEETTEE
T ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHhhCCEEEEe-cCCcEEEEEcCCCCceEEEEecCcccceEeEEecCCeE
Confidence 35688999999999999999999999999999999998764 345899988443358999999999994
Q ss_pred ----CCCCCCCC--------------cccc------------------------------------------------cC
Q 011730 167 ----IQEAVEWE--------------YKSK------------------------------------------------VA 180 (478)
Q Consensus 167 ----~~~~~~~P--------------f~~~------------------------------------------------~~ 180 (478)
.+.+...+ +... .+
T Consensus 84 ~~~~~Gg~~~~~~~g~~~~~~~~~g~~~G~i~~~~~h~~~~~~~~~~~~~~~l~id~g~~~eei~~G~~~~~~~~~~~~g 163 (346)
T 1vho_A 84 RLEPVGGVDPKVVYASKVRIYTKNGIERGVIGMLAPHLQDSESRKKVPTYDEIFVDLSLCERGVRVGDIAVIDQTAFETN 163 (346)
T ss_dssp EEEEC--------CCCEEEEEETTEEEEEETTCCCSCCCCHHHHHTSCCTTCCEEEGGGSSSCCCTTCEEEECCCCEEET
T ss_pred EEEEeCCccCcccccCEEEEEcCCCcEEEEEcCCCcccCchhhcccCCChhHeEEEeccchhcCCCCCEEEEccchhhhc
Confidence 33221110 0000 01
Q ss_pred CeEEeCcch--HHHHHHHHHHHHHHhcCCC--C----CCCccCC-CcHHHHHHcCCCCCCcEEEEEecCCCCCcceEEee
Q 011730 181 GKMHACGHD--AHVAMLIGAAKILKSREHL--L----KPAEEAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSR 251 (478)
Q Consensus 181 G~~~g~G~d--g~~a~~l~aa~~L~~~~~~--l----~~dEE~g-~G~~~l~~~g~~~~~D~~i~~~~~~~~~~g~i~~~ 251 (478)
|.++|++.| .++++++.+++.+++.+.. + ..+||.| .|+.... .. + .+|++++.++.
T Consensus 164 ~~i~g~~~D~r~g~aa~l~al~~l~~~~~~~~~~~~~t~~EEvG~~Ga~~~~-~~-i-~~~~~i~~D~~----------- 229 (346)
T 1vho_A 164 GKVVGKALDNRASCGVLVKVLEFLKRYDHPWDVYVVFSVQEETGCLGALTGA-YE-I-NPDAAIVMDVT----------- 229 (346)
T ss_dssp TEEEETTHHHHHHHHHHHHHHHHHTTCCCSSEEEEEEECTTSSSHHHHHHTT-CC-C-CCSEEEEEEEE-----------
T ss_pred CeEEeccCccHHHHHHHHHHHHHhhhcCCCceEEEEEECCcccchhhHHHHh-cc-c-CCCEEEEeecc-----------
Confidence 557777776 6677788888887754321 1 1899977 4655432 11 1 35666665531
Q ss_pred cccccceeeEEEEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCCCccceecCcEEEE
Q 011730 252 PGPLLAGCGFFHAVISGKKGGAA-NPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIG 330 (478)
Q Consensus 252 ~g~~~~g~~~~~i~v~G~~~Has-~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~a~~~ 330 (478)
|++ .|. .+ . ...+ +
T Consensus 230 --------------------~~~~~~~--~~--~-----------------~~~~----------~-------------- 244 (346)
T 1vho_A 230 --------------------FASEPPF--SD--H-----------------IELG----------K-------------- 244 (346)
T ss_dssp --------------------CCCCTTS--CC--C-----------------CCTT----------S--------------
T ss_pred --------------------cccCCCC--Cc--c-----------------cccC----------C--------------
Confidence 111 010 00 0 0000 0
Q ss_pred EEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCcccccCCC-C-
Q 011730 331 GTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVPPM-M- 408 (478)
Q Consensus 331 ~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~~-~- 408 (478)
|..+++ .+..++++++.+++++++ .|.+... ... +
T Consensus 245 -----------------------------g~~i~~-----------~~~~~~~l~~~~~~~a~~-~gi~~~~--~~~~g~ 281 (346)
T 1vho_A 245 -----------------------------GPVIGL-----------GPVVDRNLVQKIIEIAKK-HNVSLQE--EAVGGR 281 (346)
T ss_dssp -----------------------------CCEEEC-----------STTSCHHHHHHHHHHHHH-TTCCCEE--ESSCCC
T ss_pred -----------------------------CceEEe-----------CCcCCHHHHHHHHHHHHH-CCCCEEE--EeCCCC
Confidence 112221 123578899999999998 5776432 223 4
Q ss_pred ccchHHHHHH---hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHhhccc
Q 011730 409 GAEDFSFYSE---VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNEYGQ 472 (478)
Q Consensus 409 g~tD~~~~~~---~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~~~~~ 472 (478)
+++|++.+.. .+|+++++++.. .+|+++|+++++++..+++++..++.+++.++++
T Consensus 282 ggsDa~~~~~~~~gipt~~lg~~~~--------~~Hs~~E~~~~~dl~~~~~ll~~~~~~~~~~~~~ 340 (346)
T 1vho_A 282 SGTETDFVQLVRNGVRTSLISIPLK--------YMHTPVEMVDPRDVEELARLLSLVAVELEVEGGS 340 (346)
T ss_dssp ----CTTHHHHHTTCEEEEEEEECB--------STTSTTEEECHHHHHHHHHHHHHHHHHCC-----
T ss_pred CCchHHHHHHhCCCCcEEEEehhhc--------ccccHHHhcCHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 8999999964 699998666542 4999999999999999999999999998877554
No 37
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A
Probab=99.71 E-value=1.4e-16 Score=160.89 Aligned_cols=245 Identities=16% Similarity=0.146 Sum_probs=164.4
Q ss_pred HHHHHHHhhcCCCCCcch-HHHHHHHHHHHHhCCCcEEeccCCceEEEEEcCCCCcEEEEEEcccccc------------
Q 011730 100 LKSVRRTIHQNPELAFQE-FETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALP------------ 166 (478)
Q Consensus 100 l~~l~~~L~~iPs~s~~E-~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~~~p~v~~~aHlDvVP------------ 166 (478)
+++++++|+++||+|++| .+++++|.++|+++|++++.+ ...|+++.++++ .|+|+|.||||+|+
T Consensus 8 ~~~~l~~L~~~~s~sg~e~~~~~~~l~~~l~~~g~~~~~d-~~gnlia~~~g~-~~~i~l~aH~D~v~~~v~~i~~~G~l 85 (353)
T 1y0y_A 8 DYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVD-KLGNVIAHKKGE-GPKVMIAAHMDQIGLMVTHIEKNGFL 85 (353)
T ss_dssp CHHHHHHHHHSCCBTTCGGGTHHHHHHHHHGGGSSEEEEC-TTCCEEEEECCS-SCEEEEEEECCBCEEEEEEECTTSCE
T ss_pred HHHHHHHHHhCCCCCccchHHHHHHHHHHHHhhCCeEEEc-CCCCEEEEecCC-CccEEEEeccCcccEEEEEECCCceE
Confidence 578899999999999999 999999999999999998764 446899988544 68999999999995
Q ss_pred ----CCCCCC-------------------------CCc------------------------------------------
Q 011730 167 ----IQEAVE-------------------------WEY------------------------------------------ 175 (478)
Q Consensus 167 ----~~~~~~-------------------------~Pf------------------------------------------ 175 (478)
.+.+.. .|+
T Consensus 86 ~~~~~Gg~~~~~~~~~~v~v~~~~g~~~~g~i~~~~~h~~~~~~~~~~~~~~~l~~d~g~~~~~~~~~~gi~~Gd~v~~~ 165 (353)
T 1y0y_A 86 RVAPIGGVDPKTLIAQRFKVWIDKGKFIYGVGASVPPHIQKPEDRKKAPDWDQIFIDIGAESKEEAEDMGVKIGTVITWD 165 (353)
T ss_dssp EEEEESSCCGGGTTTCEEEEEEETTEEEEEEEEC-------------CCCGGGCEEECSCSSHHHHHHTTCCTTCEEEEC
T ss_pred EEEEeCCcchhhccCCEEEEEeCCCcEEEEEEeCCCcccCchhhccCCCChHHeEEEeCCCCHHHHHHcCCCCCCEEEec
Confidence 433211 110
Q ss_pred ---ccccCCeEEeCcch--HHHHHHHHHHHHHHhcCCCC----CCCccCC-CcHHHHHHcCCCCCCcEEEEEecCCCCCc
Q 011730 176 ---KSKVAGKMHACGHD--AHVAMLIGAAKILKSREHLL----KPAEEAG-NGAKRMMADGALEDVEAIFAVHVSHEHPT 245 (478)
Q Consensus 176 ---~~~~~G~~~g~G~d--g~~a~~l~aa~~L~~~~~~l----~~dEE~g-~G~~~l~~~g~~~~~D~~i~~~~~~~~~~ 245 (478)
....+|++||+..| ++++++|.+++.|++....+ ..+||.| .|++.+... + .+|++|+++++...
T Consensus 166 ~~~~~~~~~~i~gra~D~k~g~a~~l~a~~~l~~~~~~i~~~~~~~EE~g~~G~~~~~~~--~-~~~~~i~~d~~~~~-- 240 (353)
T 1y0y_A 166 GRLERLGKHRFVSIAFDDRIAVYTILEVAKQLKDAKADVYFVATVQEEVGLRGARTSAFG--I-EPDYGFAIDVTIAA-- 240 (353)
T ss_dssp CCCEEETTTEEEETTHHHHHHHHHHHHHHHHCCSCSSEEEEEEESCCTTTSHHHHHHHHH--H-CCSEEEEEEEEECC--
T ss_pred cCcEEecCCeEEeccCccHHHHHHHHHHHHHhhcCCCeEEEEEECCcccchhHHHHHhhc--c-CCCEEEEEeccccc--
Confidence 00113568888655 77888888888876511111 1999987 488877542 2 47899988864210
Q ss_pred ceEEeecccccceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCCCccceecC
Q 011730 246 GVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPD 325 (478)
Q Consensus 246 g~i~~~~g~~~~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG~~~NvIP~ 325 (478)
...+ +. .+.| .+ .+.+|..
T Consensus 241 ----~~p~------------------~~--~~~g----------------------~~---------~lg~G~~------ 259 (353)
T 1y0y_A 241 ----DIPG------------------TP--EHKQ----------------------VT---------HLGKGTA------ 259 (353)
T ss_dssp ----CSTT------------------CC--GGGC----------------------CC---------CTTSCEE------
T ss_pred ----CCCC------------------Cc--cccC----------------------cc---------ccCCCcE------
Confidence 0000 00 0000 00 0012200
Q ss_pred cEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCcccccC
Q 011730 326 AVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVP 405 (478)
Q Consensus 326 ~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~~~~~ 405 (478)
+.+.. . ....++++++.+++++++. |.+... ..
T Consensus 260 ---------------------------------------i~~~d---~---~~~~~~~l~~~l~~~a~~~-gi~~~~-~~ 292 (353)
T 1y0y_A 260 ---------------------------------------IKIMD---R---SVICHPTIVRWLEELAKKH-EIPYQL-EI 292 (353)
T ss_dssp ---------------------------------------EEEEE---T---TEECCHHHHHHHHHHHHHT-TCCEEE-EE
T ss_pred ---------------------------------------EEEeC---C---CCCCCHHHHHHHHHHHHHc-CCCEEE-ee
Confidence 11111 0 2335788999999999884 765431 13
Q ss_pred CCCccchHHHH--HH-hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHH
Q 011730 406 PMMGAEDFSFY--SE-VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFL 467 (478)
Q Consensus 406 ~~~g~tD~~~~--~~-~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll 467 (478)
...++||++.+ +. .+|++++++|. ..+|+++|+++++++..++++++.++.++.
T Consensus 293 ~~~ggsDa~~~~~~~~GiPtv~lg~~~--------~~~Hs~~E~v~~~dl~~~~~ll~~~l~~l~ 349 (353)
T 1y0y_A 293 LLGGGTDAGAIHLTKAGVPTGALSVPA--------RYIHSNTEVVDERDVDATVELMTKALENIH 349 (353)
T ss_dssp CSSCCCTHHHHTTSTTCCCEEEEEEEE--------BSCSSSCEEEEHHHHHHHHHHHHHHHHHGG
T ss_pred cCCCCchHHHHHHhCCCCcEEEEcccc--------cccCCHHHhcCHHHHHHHHHHHHHHHHhhh
Confidence 45789999999 44 59998865543 249999999999999999999999988764
No 38
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406}
Probab=99.68 E-value=3.7e-17 Score=162.96 Aligned_cols=239 Identities=12% Similarity=0.023 Sum_probs=159.3
Q ss_pred cchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEecc----C--CceEEEEEcCCCCcEEEEEEcccccc-
Q 011730 94 PETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL----A--KTGIRAWVGTGGPPFVALRADMDALP- 166 (478)
Q Consensus 94 ~~~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~----~--~~~via~~g~~~~p~v~~~aHlDvVP- 166 (478)
+++++++++++++|+++||+|++|.+++++|.++|+++|++++++. . ..|+++.+++ + |.|+|.||||||+
T Consensus 13 ~~~~~~~~~~l~~Lv~i~s~sg~e~~v~~~l~~~l~~~g~~v~~d~~~~~~~~~gnlia~~~g-~-~~ill~aH~DtV~~ 90 (321)
T 3cpx_A 13 ENLYFQGMQLLKELCSIHAPSGNEEPLKDFILEYIRSNAGSWSYQPVIYADNDLQDCIVLVFG-N-PRTAVFAHMDSIGF 90 (321)
T ss_dssp CGGGCCHHHHHHHHHHSCCBTTCCHHHHHHHHHHHHHHGGGSSSCCEEECSGGGTTCEEEEES-S-CSEEEEEECCBCEE
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhCCeEEEccccccccCCccEEEEecC-C-ceEEEEecCCcCCe
Confidence 5678889999999999999999999999999999999999876543 1 3578888744 3 8899999999994
Q ss_pred ----------CCCCCCC------------C-------------------------------cccccCCeEEeCcch--HH
Q 011730 167 ----------IQEAVEW------------E-------------------------------YKSKVAGKMHACGHD--AH 191 (478)
Q Consensus 167 ----------~~~~~~~------------P-------------------------------f~~~~~G~~~g~G~d--g~ 191 (478)
.+.+..| + |... .|+++|++.| ++
T Consensus 91 ~v~~i~~~~~~Gg~~~~~~~~v~~~~~~g~~~gvi~~~ee~~~ida~~lv~~Gd~v~~~~~~~~~-~g~i~~~~~D~k~G 169 (321)
T 3cpx_A 91 TVSYNNHLHPIGSPSAKEGYRLVGKDSNGDIEGVLKIVDEEWMLETDRLIDRGTEVTFKPDFREE-GDFILTPYLDDRLG 169 (321)
T ss_dssp EECSTTBEEEESSCCCCTTCEEEEEETTEEEEEEEECGGGSCEEECSSCCCTTCEEEECCCCEEE-TTEEECTTHHHHHH
T ss_pred EecccCCeEEcCChhhcccCEEEEEeCCCceeeeECCccHHHHHHHHhcCCCCCEEEeccCcEEE-cCEEEEcCCcCHHH
Confidence 2221111 0 1111 2567777776 67
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccCC-CcHHHHH---HcCCCCCCcEEEEEecCCCCCcceEEeecccccceeeEEEEEEE
Q 011730 192 VAMLIGAAKILKSREHLLKPAEEAG-NGAKRMM---ADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVIS 267 (478)
Q Consensus 192 ~a~~l~aa~~L~~~~~~l~~dEE~g-~G~~~l~---~~g~~~~~D~~i~~~~~~~~~~g~i~~~~g~~~~g~~~~~i~v~ 267 (478)
+++++.+++.++....-+..+||.| .|++... ... + .+|++++.+++.. + .
T Consensus 170 ~aa~l~al~~l~~i~~~~t~~EEvG~~Ga~~a~~~~~~~-~-~~~~~i~~D~~~~----------~-----~-------- 224 (321)
T 3cpx_A 170 VWTALELAKTLEHGIIAFTCWEEHGGGSVAYLARWIYET-F-HVKQSLICDITWV----------T-----E-------- 224 (321)
T ss_dssp HHHHHHHTTTCCSEEEEEESSTTTTCCSHHHHHHHHHHH-H-CCCEEEECCCEEC----------C-----S--------
T ss_pred HHHHHHHHHHhcCcEEEEECCccCchhcchhhhhccccc-c-CCCEEEEEeCccc----------c-----C--------
Confidence 7777777766541000122899987 4666422 111 1 4688888774310 0 0
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHH
Q 011730 268 GKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQR 347 (478)
Q Consensus 268 G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~ 347 (478)
.. ..+ .
T Consensus 225 ---------------------------~~------~~~----------~------------------------------- 230 (321)
T 3cpx_A 225 ---------------------------GV------EAG----------K------------------------------- 230 (321)
T ss_dssp ---------------------------SS------CTT----------S-------------------------------
T ss_pred ---------------------------Cc------ccC----------C-------------------------------
Confidence 00 000 0
Q ss_pred HHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHH---hcccce
Q 011730 348 IEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSE---VVPAAF 424 (478)
Q Consensus 348 i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~---~iP~~~ 424 (478)
| +.++... + ...++++++.+++++++ .|.+... ....+|+||++.+.. ++|++.
T Consensus 231 ------------G--~~i~~~~-----~--~~~~~~l~~~~~~~a~~-~gi~~q~-~~~~~GGsD~~~~~~s~~Gipt~~ 287 (321)
T 3cpx_A 231 ------------G--VAISMRD-----R--MIPRKKYVNRIIELARQ-TDIPFQL-EVEGAGASDGRELQLSPYPWDWCF 287 (321)
T ss_dssp ------------C--EEEEEES-----S--SCCCHHHHHHHHHHHTT-SSCCEEE-EECSSCCCHHHHHHHSSSCCBCCB
T ss_pred ------------C--cEEEECC-----C--CCCCHHHHHHHHHHHHH-cCCCEEE-EeCCCCCccHHHHHHhCCCCCEEE
Confidence 1 1122221 1 12578899999999887 4775431 123678999999843 489986
Q ss_pred EEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHH
Q 011730 425 YYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAER 465 (478)
Q Consensus 425 ~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ 465 (478)
+++|. ...|+++|+++++++...+++++.++.+
T Consensus 288 lG~~~--------~~~Hs~~E~~~~~dl~~~~~ll~~~~~~ 320 (321)
T 3cpx_A 288 IGAPE--------KDAHTPNECVHKKDIESMVGLYKYLMEK 320 (321)
T ss_dssp EECEE--------BSTTSTTCEEEHHHHHHHHHHHHHHHHH
T ss_pred Echhh--------cccchhhhheeHHHHHHHHHHHHHHHHh
Confidence 44433 3599999999999999999999999865
No 39
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4
Probab=99.67 E-value=3.1e-15 Score=150.58 Aligned_cols=244 Identities=14% Similarity=0.150 Sum_probs=161.2
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEcCCCCcEEEEEEcccccc---------------
Q 011730 102 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALP--------------- 166 (478)
Q Consensus 102 ~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~~~p~v~~~aHlDvVP--------------- 166 (478)
+++++|+++||+|++|.+++++|.++|+++|++++.+ ...|+++++.+.+.|.|+|.||||||+
T Consensus 7 ~~l~~Lv~~~s~sg~e~~~~~~l~~~l~~~g~~v~~d-~~gnlia~~~g~~~~~vll~aH~DtV~~~v~~i~~~G~~~~~ 85 (348)
T 1ylo_A 7 SLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFD-GLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVL 85 (348)
T ss_dssp HHHHHHHHSCCBTTBCHHHHHHHHHHHHHTTCCEEEC-TTCCEEEECCCCSSCEEEEEEECCCCEEEEEEECTTCCEEEE
T ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHhhCCEEEEe-cCCCEEEEecCCCCceEEEEEcCCccceEEEEECCCCeEEEE
Confidence 7889999999999999999999999999999998764 335899987433358999999999996
Q ss_pred -CCCCC--C----------------------------------------------------------CCcccccCCeEEe
Q 011730 167 -IQEAV--E----------------------------------------------------------WEYKSKVAGKMHA 185 (478)
Q Consensus 167 -~~~~~--~----------------------------------------------------------~Pf~~~~~G~~~g 185 (478)
.+.+. . .+|....+|+++|
T Consensus 86 ~~Gg~~~~~~~g~~v~~~~~~G~~~~h~~~~~~~~~~~~~l~id~G~~s~~~~~~~gi~~g~~i~~~~~~~~~~~~~~~~ 165 (348)
T 1ylo_A 86 PVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARTYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMG 165 (348)
T ss_dssp EESCCCGGGSSSEEEEEECTTCCEEEEEEEEEEETTEEEEEEEECSCCSHHHHHHTTCCTTCEEEECCCCEEETTTEEEE
T ss_pred ecCCcchhhccCCEEEEEeCCCCCCcchhhhhccCCChhHEEEEecCCCHHHHHHcCCCCCCEEEEccccEEecCCEEEe
Confidence 11110 0 0111124578888
Q ss_pred Ccch--HHHHHHHHHHHHHHhcCCC--C----CCCccCCC-cHHHHHHcCCCCCCcEEEEEecCCCCCcceEEeeccccc
Q 011730 186 CGHD--AHVAMLIGAAKILKSREHL--L----KPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLL 256 (478)
Q Consensus 186 ~G~d--g~~a~~l~aa~~L~~~~~~--l----~~dEE~g~-G~~~l~~~g~~~~~D~~i~~~~~~~~~~g~i~~~~g~~~ 256 (478)
++.| .++++++.+++.+++.... + .++||.|. |+...... + .+|++++.+++.. +
T Consensus 166 ~~~D~k~g~aa~l~al~~l~~~~~~~~~~~~~t~~EEvG~~Ga~~~~~~--i-~~~~~i~~D~~~~----------~--- 229 (348)
T 1ylo_A 166 KAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRA--V-SPDVAIVLDTACW----------A--- 229 (348)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCCTTSSHHHHHHHHH--H-CCSEEEEECCCCC----------S---
T ss_pred cCcccHHHHHHHHHHHHHhhhcCCCceEEEEEEcccccchhHHHHhhcc--c-CCCEEEEEecccc----------C---
Confidence 8876 6777788888887654321 1 18999773 66544332 1 3678887764321 0
Q ss_pred ceeeEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhcccCCCCCcEEEEEEEeCCCccceecCcEEEEEEEecc
Q 011730 257 AGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAF 336 (478)
Q Consensus 257 ~g~~~~~i~v~G~~~Has~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~ 336 (478)
..|. .+. .. . ..++ .|
T Consensus 230 -----------------~~~~--~~~-----------~~----~-~~~~----------~G------------------- 245 (348)
T 1ylo_A 230 -----------------KNFD--YGA-----------AN----H-RQIG----------NG------------------- 245 (348)
T ss_dssp -----------------STTC--CST-----------TC----C-CCTT----------SC-------------------
T ss_pred -----------------CCCC--CCc-----------cc----c-ccCC----------CC-------------------
Confidence 0111 110 00 0 0000 01
Q ss_pred ChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHH
Q 011730 337 SNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFY 416 (478)
Q Consensus 337 p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~ 416 (478)
.. +.+.. . ....++.+++.+++++++ .|.+... ....++++|++.+
T Consensus 246 ------------------------~~--i~~~~---~---~~~~~~~l~~~~~~~a~~-~gi~~~~-~~~~~ggsDa~~~ 291 (348)
T 1ylo_A 246 ------------------------PM--LVLSD---K---SLIAPPKLTAWIETVAAE-IGVPLQA-DMFSNGGTDGGAV 291 (348)
T ss_dssp ------------------------CE--EEEEC---S---SCBCCHHHHHHHHHHHHH-HTCCCEE-EECSSCCCHHHHH
T ss_pred ------------------------cE--EEEeC---C---CCCCCHHHHHHHHHHHHH-cCCCeEE-eecCCCcchHHHH
Confidence 11 12221 1 123578899999999988 4775431 1345789999999
Q ss_pred HH---hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHHHHHHHHh
Q 011730 417 SE---VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLN 468 (478)
Q Consensus 417 ~~---~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~~~~~ll~ 468 (478)
.. .+|+++++++. ..+|+++|+++++++..+++++..++.++..
T Consensus 292 ~~~~~gipt~~lg~~~--------~~~Hs~~E~~~~~d~~~~~~ll~~~~~~l~~ 338 (348)
T 1ylo_A 292 HLTGTGVPTLVMGPAT--------RHGHCAASIADCRDILQMEQLLSALIQRLTR 338 (348)
T ss_dssp HTSTTCCCEEEEECCC--------BSCSSSCEEEEHHHHHHHHHHHHHHHHTCCH
T ss_pred HHhcCCCCEEEECccc--------CcCCCcceEeeHHHHHHHHHHHHHHHHHhhH
Confidence 64 59998765443 2499999999999999999999999887644
No 40
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A
Probab=99.33 E-value=2.3e-12 Score=125.93 Aligned_cols=126 Identities=14% Similarity=0.067 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHhhcCCCCCc--------chHHHHHHHHHHHHhCCCcEEeccC------CceEEEEEcCC-CCcEEEEEE
Q 011730 96 TVDWLKSVRRTIHQNPELAF--------QEFETSRLLRAELDRMEIGYKYPLA------KTGIRAWVGTG-GPPFVALRA 160 (478)
Q Consensus 96 ~~~~l~~l~~~L~~iPs~s~--------~E~~~a~~l~~~L~~~G~~v~~~~~------~~~via~~g~~-~~p~v~~~a 160 (478)
..+++++++++|++||++++ .|.++++||.++|+++|++++.... +.|+++++.+. +++.|+|.+
T Consensus 5 ~~~~~~~~l~~L~~i~s~s~~~r~~~~~~e~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~nvi~~~~g~~~~~~i~l~a 84 (284)
T 1tkj_A 5 PLANVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSGGATGYNLIANWPGGDPNKVLMAGA 84 (284)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEETTEEEEEEEEECSCSEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHcccccCCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeccCCCCceeEEEEEeCCCCCCEEEEEe
Confidence 36788999999999998886 6889999999999999999776421 46999998543 458899999
Q ss_pred ccccccCCCCCCCCcccccCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC--------CCccCC-CcHHHHHHcCC-
Q 011730 161 DMDALPIQEAVEWEYKSKVAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK--------PAEEAG-NGAKRMMADGA- 227 (478)
Q Consensus 161 HlDvVP~~~~~~~Pf~~~~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~--------~dEE~g-~G~~~l~~~g~- 227 (478)
|||+||.+ +|. | ++++++|.+++.|++.+.++. .+||.| .|++.+++.-.
T Consensus 85 H~D~v~~g-----------------~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~~Gs~~~~~~~~~ 147 (284)
T 1tkj_A 85 HLDSVSSG-----------------AGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSKFYVNNLPS 147 (284)
T ss_dssp ECCCCTTS-----------------CCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHHHHHSCH
T ss_pred ecCCCCCC-----------------CCCccChHHHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCCcCHHHHHhhCcc
Confidence 99999952 343 2 788999999999998765443 999987 48988887622
Q ss_pred --CCCCcEEEEEe
Q 011730 228 --LEDVEAIFAVH 238 (478)
Q Consensus 228 --~~~~D~~i~~~ 238 (478)
..+++++|.++
T Consensus 148 ~~~~~~~~~i~~D 160 (284)
T 1tkj_A 148 ADRSKLAGYLNFD 160 (284)
T ss_dssp HHHTTEEEEEEEC
T ss_pred chhhcEEEEEEec
Confidence 12456666665
No 41
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=99.33 E-value=8.8e-11 Score=118.02 Aligned_cols=67 Identities=18% Similarity=0.100 Sum_probs=59.8
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEcC-C-CCcEEEEEEcccccc
Q 011730 99 WLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT-G-GPPFVALRADMDALP 166 (478)
Q Consensus 99 ~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~-~-~~p~v~~~aHlDvVP 166 (478)
++++++++|+++|++|+.|.++++++.++|+++|++++++ ...|+++++++ + ++|.|+|.||||+|+
T Consensus 4 ~~~~~l~~L~~ips~SG~E~~v~~~l~~~l~~~g~~~~~D-~~GNli~~~~g~~~~~~~v~l~aHmD~Vg 72 (355)
T 3kl9_A 4 TLFSKIKEVTELAAVSGHEAPVRAYLREKLTPHVDEVVTD-GLGGIFGIKHSEAVDAPRVLVASHMDEVG 72 (355)
T ss_dssp HHHHHHHHHHTSCCBTTCCHHHHHHHHHHHGGGSSEEEEC-TTSCEEEEECCCSTTCCEEEEEEECCBCE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCEEEEC-CCCeEEEEECCcCCCCCeEEEEecccccc
Confidence 6789999999999999999999999999999999998764 44689999844 3 479999999999998
No 42
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...
Probab=99.16 E-value=1.7e-10 Score=113.45 Aligned_cols=120 Identities=12% Similarity=0.167 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhhcCCC---CCcchHHHHHHHHHHHHhCC--Cc-EEecc------CCceEEEEEcC-C-CCcEEEEEEcc
Q 011730 97 VDWLKSVRRTIHQNPE---LAFQEFETSRLLRAELDRME--IG-YKYPL------AKTGIRAWVGT-G-GPPFVALRADM 162 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs---~s~~E~~~a~~l~~~L~~~G--~~-v~~~~------~~~~via~~g~-~-~~p~v~~~aHl 162 (478)
.+++++++++|++||+ .+..|.++++||.++|+++| ++ ++... ...|+++++.+ + +.+.|+|.||+
T Consensus 19 ~~~~~~~l~~L~~i~sr~~~s~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~nvi~~~~g~~~~~~~v~l~aH~ 98 (299)
T 1rtq_A 19 ASQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIGGHL 98 (299)
T ss_dssp HHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETTEEEEEEEEEECCSSEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhCcCCCCCCCchHHHHHHHHHHHHHHhcCCcccceeeeeccCCCCCceEEEEEECCCCCCCEEEEEecc
Confidence 6889999999999984 46778899999999999986 43 33221 13689999943 3 35789999999
Q ss_pred ccccCCCCCCCCcccccCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC--------CCccCC-CcHHHHHHc
Q 011730 163 DALPIQEAVEWEYKSKVAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK--------PAEEAG-NGAKRMMAD 225 (478)
Q Consensus 163 DvVP~~~~~~~Pf~~~~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~--------~dEE~g-~G~~~l~~~ 225 (478)
|+||. . |+ ++..||+|+ | ++++++|.+++.|++.+.++. .+||.| .|++.+++.
T Consensus 99 D~v~~-~---~~-----~~~~~~~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~~Gs~~~~~~ 164 (299)
T 1rtq_A 99 DSTIG-S---HT-----NEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQ 164 (299)
T ss_dssp CCCSS-T---TC-----CTTCCCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHHHHH
T ss_pred ccCCC-c---Cc-----CCCcccCCCcccHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCccCCchhHHHHHHh
Confidence 99982 2 21 245688888 3 788899999999998764443 899987 488888764
No 43
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}
Probab=99.13 E-value=7.4e-10 Score=109.31 Aligned_cols=125 Identities=16% Similarity=0.052 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhcCC---CCCcchHHHHHHHHHHHHhCCCcEEecc-------C----CceEEEEEcCCCCcEEEEEEcc
Q 011730 97 VDWLKSVRRTIHQNP---ELAFQEFETSRLLRAELDRMEIGYKYPL-------A----KTGIRAWVGTGGPPFVALRADM 162 (478)
Q Consensus 97 ~~~l~~l~~~L~~iP---s~s~~E~~~a~~l~~~L~~~G~~v~~~~-------~----~~~via~~g~~~~p~v~~~aHl 162 (478)
.+++++.+++|.++. ..+..+.++++||.++|+++|++++... + ..||++++.+.+.+.|++.||+
T Consensus 24 ~~~~~~~l~~l~~~~~R~~~s~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~g~~~~~ill~aH~ 103 (309)
T 3tc8_A 24 ADSAYAYVANQVAFGPRVPNTAAHKACGDYLASELKRFGAKVYQQEAILTAYDGTKLEARNIIGSFDPENSKRVLLFAHW 103 (309)
T ss_dssp HHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTCSSEEEEEEEC
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEeeccccCCCcccceEEEEEECCCCCceEEEEecc
Confidence 455666666666553 3356788999999999999999976531 1 2699999965556899999999
Q ss_pred ccccCCCCCCCCcccccCCeEEeCcch---HHHHHHHHHHHHHHhcCCCCC------CCccCC--------------CcH
Q 011730 163 DALPIQEAVEWEYKSKVAGKMHACGHD---AHVAMLIGAAKILKSREHLLK------PAEEAG--------------NGA 219 (478)
Q Consensus 163 DvVP~~~~~~~Pf~~~~~G~~~g~G~d---g~~a~~l~aa~~L~~~~~~l~------~dEE~g--------------~G~ 219 (478)
|+||.++ ..||. ..+|+.| +|.+ +++|++|.+++.|++.+.+.. .+||.| .|+
T Consensus 104 Dsv~~~~--~~p~~-~~~~~~~-~Ga~D~~sGva~~Le~ar~l~~~~~~~~i~f~~~~~EE~Gl~~~~~~~~~ds~~~GS 179 (309)
T 3tc8_A 104 DSRPYSD--HDPDP-SKHRTPL-DGADDGGSGVGALLEIARQIGQKAPGIGIDIIFFDAEDYGTPEFVTDYTPDSWCLGT 179 (309)
T ss_dssp CCCSCCT--TCSSG-GGTTSCC-CCTTTTHHHHHHHHHHHHHHHHSCCSSEEEEEEECSCSCSCCTTCCSCCTTCSCHHH
T ss_pred cCCCCCC--CCccc-cCCCccc-cCcccchHhHHHHHHHHHHHHhCCCCCcEEEEEECccccccccccccccccccchhH
Confidence 9999764 35665 3345655 6662 788999999999998753322 899975 488
Q ss_pred HHHHHc
Q 011730 220 KRMMAD 225 (478)
Q Consensus 220 ~~l~~~ 225 (478)
+++.+.
T Consensus 180 ~~~~~~ 185 (309)
T 3tc8_A 180 QFWAKN 185 (309)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 888875
No 44
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.06 E-value=1.8e-09 Score=106.64 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhhcCCC---CCcchHHHHHHHHHHHHhCCCcEEecc-------C----CceEEEEEcCCCCcEEEEEEcc
Q 011730 97 VDWLKSVRRTIHQNPE---LAFQEFETSRLLRAELDRMEIGYKYPL-------A----KTGIRAWVGTGGPPFVALRADM 162 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs---~s~~E~~~a~~l~~~L~~~G~~v~~~~-------~----~~~via~~g~~~~p~v~~~aHl 162 (478)
.+++++++++|.++++ .+..+.++++||.++|+++|++++... + ..||++++.+.+.+.|+|.+|+
T Consensus 26 ~~~~~~~l~~L~~~~~R~~gs~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~g~~~~~ill~aH~ 105 (314)
T 3gux_A 26 ADSAYQYIQVQADFGPRVPNTQAHKECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPESKKRILLCAHW 105 (314)
T ss_dssp HHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTCSSEEEEEEEC
T ss_pred HHHHHHHHHHHHccCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeeccccCCCcccceEEEEEECCCCCceEEEEccc
Confidence 4667777777877753 345678999999999999999876431 1 2699999965446899999999
Q ss_pred ccccCCCCCCCCcccccCCeEEeCcch---HHHHHHHHHHHHHHhcCCCCC------CCccCC---------------Cc
Q 011730 163 DALPIQEAVEWEYKSKVAGKMHACGHD---AHVAMLIGAAKILKSREHLLK------PAEEAG---------------NG 218 (478)
Q Consensus 163 DvVP~~~~~~~Pf~~~~~G~~~g~G~d---g~~a~~l~aa~~L~~~~~~l~------~dEE~g---------------~G 218 (478)
|+||.++ ..|+.. .++. .++|.+ ++++++|.+++.|++.+.+.. .+||.| .|
T Consensus 106 Dsv~~~~--~~p~~~-~~~~-~~~GA~D~~sGva~~Le~ar~l~~~~~~~~i~fv~~~~EE~Gl~~~~~~~~~~ds~~~G 181 (314)
T 3gux_A 106 DSRPYAD--NDPDPK-NHHT-PILGVNDGASGVGVLLEIARQIQKEQPALGIDIVFFDSEDYGIPEFYDGKYKQDTWCLG 181 (314)
T ss_dssp CCCC------------------------CHHHHHHHHHHHHHHHHSCCSSEEEEEEECSCCC-----------CTTSCHH
T ss_pred cCCCcCC--CCcccc-cCCc-ccCCCcccHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccccccccccccchh
Confidence 9999754 235432 1233 346663 788999999999998753322 899975 47
Q ss_pred HHHHHHc
Q 011730 219 AKRMMAD 225 (478)
Q Consensus 219 ~~~l~~~ 225 (478)
++++.+.
T Consensus 182 S~~~~~~ 188 (314)
T 3gux_A 182 SQYWART 188 (314)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 8888775
No 45
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Probab=98.93 E-value=7.7e-09 Score=103.01 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=90.4
Q ss_pred HHHHHHhcCcchHHHH-HHHHHHhhcCCCC-CcchHHHHHHHHHHHHh--CCCcEEecc-------C---CceEEEEEcC
Q 011730 85 KEVMELARRPETVDWL-KSVRRTIHQNPEL-AFQEFETSRLLRAELDR--MEIGYKYPL-------A---KTGIRAWVGT 150 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~l-~~l~~~L~~iPs~-s~~E~~~a~~l~~~L~~--~G~~v~~~~-------~---~~~via~~g~ 150 (478)
.++.+.+ + .+++ .+++++|+..+.. +..+.++++||.++|++ +|++++... + ..||++++++
T Consensus 22 ~~~~~~~--~--~~~~~~~~l~~L~~~r~~~s~~~~~~~~~l~~~l~~~~~G~~v~~~~~~~~~~~g~~~~~Nvi~~~~g 97 (329)
T 2afw_A 22 RQIAEGT--S--ISEMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNP 97 (329)
T ss_dssp HHHHHHC--C--HHHHHHHTTGGGCSCCCTTSHHHHHHHHHHHHHHHTSSSCCEEEEEEEEECCTTSSEEEEEEEEESST
T ss_pred HHhhhhc--C--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEEEEEecCCCCCceEeEEEEEECC
Confidence 4454455 3 6778 8889999755543 34456789999999999 999876532 1 3699999955
Q ss_pred CCCcEEEEEEccccccCCCCCCCCcccccCCeEEeCcc-h--HHHHHHHHHHHHHHhcC--------CCCC--------C
Q 011730 151 GGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGH-D--AHVAMLIGAAKILKSRE--------HLLK--------P 211 (478)
Q Consensus 151 ~~~p~v~~~aHlDvVP~~~~~~~Pf~~~~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~--------~~l~--------~ 211 (478)
.+.+.|++.||+|+||.+.+ +|++ ++|. | +++|++|.+++.|++.. .++. .
T Consensus 98 ~~~~~i~l~aH~Dsv~~~~~---------~~~~-~~Ga~D~~sGva~~le~ar~l~~~~~~~~~~~g~~~~~~i~~~~~~ 167 (329)
T 2afw_A 98 TAKRHLVLACHYDSKYFSHW---------NNRV-FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFD 167 (329)
T ss_dssp TSSEEEEEEEECCCCCCCCB---------TTBC-CCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEES
T ss_pred CCCcEEEEEEeccCCCcCcc---------cCcC-CCCcccchhhHHHHHHHHHHHHHHHhhhcccccCCCCccEEEEEec
Confidence 45689999999999996522 1333 5666 2 78889999999998751 2222 8
Q ss_pred CccC--------C-CcHHHHHHc
Q 011730 212 AEEA--------G-NGAKRMMAD 225 (478)
Q Consensus 212 dEE~--------g-~G~~~l~~~ 225 (478)
+||. + .|++.+++.
T Consensus 168 ~EE~~~~~~~~~gl~Gs~~~~~~ 190 (329)
T 2afw_A 168 GEEAFLHWSPQDSLYGSRHLAAK 190 (329)
T ss_dssp CCSCSSSCCSSSSCHHHHHHHHH
T ss_pred CcccccccCCCccchhHHHHHHH
Confidence 9996 4 388888765
No 46
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=98.76 E-value=8e-09 Score=82.28 Aligned_cols=79 Identities=18% Similarity=0.088 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHH-hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHHHHHHH
Q 011730 383 DMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSE-VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHAT 461 (478)
Q Consensus 383 ~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~-~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~~i~a~ 461 (478)
++++.++++++++ |.++. +..++|+||+++|.. .+|++. +|++... ...+|++||+|+++++.+++++|++
T Consensus 2 ~~v~~l~~a~~~~-g~~~~--~~~~~g~TDar~~~~~gip~v~--fGPg~~~---~~~~H~~dE~v~i~~l~~~~~iy~~ 73 (88)
T 1q7l_B 2 PWWAAFSRVCKDM-NLTLE--PEIMPAAGDNRYIRAVGVPALG--FSPMNRT---PVLLHDHDERLHEAVFLRGVDIYTR 73 (88)
T ss_dssp HHHHHHHHHHHHT-TCCEE--EEECCSCSHHHHHHHTTCCEEE--ECCCCSC---CCCTTSTTCEEEHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc-CCeeE--eeeeceeCcHHHHHHcCCCEEE--ECCCCCC---cccccCCCCeeEHHHHHHHHHHHHH
Confidence 6899999999997 87653 467789999999976 488765 4665421 1369999999999999999999999
Q ss_pred HHHHHHhh
Q 011730 462 IAERFLNE 469 (478)
Q Consensus 462 ~~~~ll~~ 469 (478)
++.++++.
T Consensus 74 ~i~~~~~~ 81 (88)
T 1q7l_B 74 LLPALASV 81 (88)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 99999875
No 47
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=9.3e-07 Score=87.10 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhcC-CCC--CcchHHHHHHHHHHHHhCCCcEEec-------cC----CceEEEEEcCCCCcEEEEEEccc
Q 011730 98 DWLKSVRRTIHQN-PEL--AFQEFETSRLLRAELDRMEIGYKYP-------LA----KTGIRAWVGTGGPPFVALRADMD 163 (478)
Q Consensus 98 ~~l~~l~~~L~~i-Ps~--s~~E~~~a~~l~~~L~~~G~~v~~~-------~~----~~~via~~g~~~~p~v~~~aHlD 163 (478)
+.+.+.++.|.++ |.+ |....++++||.+.|+++|++|+.. .+ ..|+|+++.+...+.|++.+|+|
T Consensus 25 ~~a~~~l~~l~~fgpR~~gS~~~~~a~~~i~~~l~~~g~~v~~q~~~~~~~~~~~~~~~Nii~~~~g~~~~~i~l~aH~D 104 (309)
T 4fuu_A 25 DSAYLYVKNQVDFGPRVPNTKEHVACGNYLAGKLEAFGAKVTNQYADLIAYDGTLLKARNIIGSYKPESKKRIALFAHWD 104 (309)
T ss_dssp HHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTCSSEEEEEEECC
T ss_pred HHHHHHHHHHhCcCCcCCCCHHHHHHHHHHHHHHHHcCCeeEEEeEEeccCCCCcceeEEEEEEECCCCCceEEEEeecC
Confidence 4455555566654 333 3445678999999999999997642 11 25899999655568999999999
Q ss_pred cccCCCCCCCCcccccCCeEEeCcc--h-HHHHHHHHHHHHHHhcCCCCC------CCccCC
Q 011730 164 ALPIQEAVEWEYKSKVAGKMHACGH--D-AHVAMLIGAAKILKSREHLLK------PAEEAG 216 (478)
Q Consensus 164 vVP~~~~~~~Pf~~~~~G~~~g~G~--d-g~~a~~l~aa~~L~~~~~~l~------~dEE~g 216 (478)
++|..+....+-. +.....|+ + .++|++|.+++.|.+...+.. .+||.|
T Consensus 105 s~~~~~~~~~~~~----~~~~~~GA~D~aSG~a~lLE~ar~l~~~~~~~~i~~~~~~~EE~G 162 (309)
T 4fuu_A 105 TRPWADNDADEKN----HHTPILGANDGASGVGALLEIARLVNQQQPELGIDIIFLDAEDYG 162 (309)
T ss_dssp CCSCCTTCSSGGG----TTSCCCCTTTTHHHHHHHHHHHHHHHHSCCSSEEEEEEECSSSCC
T ss_pred CCCCCCCcccccc----ccCCcCCcccCchhHHHHHHHHHHHhhcCCCCceEEEeecccccC
Confidence 9996543221111 11112344 3 688999999999998655432 788876
No 48
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A 2pe3_A
Probab=98.47 E-value=1.6e-07 Score=94.08 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcCCCCCcchH-HHHHHHHHHHHhCCCcEEeccCCceEEEEEcCCCCcEEEEEEcccccc
Q 011730 99 WLKSVRRTIHQNPELAFQEF-ETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALP 166 (478)
Q Consensus 99 ~l~~l~~~L~~iPs~s~~E~-~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~~~p~v~~~aHlDvVP 166 (478)
.+++++++|+++|++|+.|. ++++++.++|+++|++++++ ...|+++++++. +|.|+|.||||+|+
T Consensus 10 ~~~~~l~~L~~ipspSG~E~~~v~~~l~~~l~~~g~~~~~D-~~GNvi~~~~g~-~~~v~l~aHmDtVg 76 (354)
T 2vpu_A 10 VDWKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVD-KLGNVIAHFKGS-SPRIMVAAHMDKIG 76 (354)
T ss_dssp CCHHHHHHHHHSCCBTTCGGGTHHHHHHHHHHTTCSEEEEC-TTCCEEEEECCS-SSEEEEECCCCBCE
T ss_pred HHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHhCCEEEEc-CCCeEEEEEcCC-CCEEEEEecccccc
Confidence 46889999999999999999 99999999999999998764 446899998544 49999999999998
No 49
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*
Probab=98.42 E-value=1.4e-06 Score=86.36 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=79.1
Q ss_pred HHHHHH-HHHHhhcCCCC--CcchHHHHHHHHHHHHhC--CCcEEeccC----------CceEEEEEcCCCCcEEEEEEc
Q 011730 97 VDWLKS-VRRTIHQNPEL--AFQEFETSRLLRAELDRM--EIGYKYPLA----------KTGIRAWVGTGGPPFVALRAD 161 (478)
Q Consensus 97 ~~~l~~-l~~~L~~iPs~--s~~E~~~a~~l~~~L~~~--G~~v~~~~~----------~~~via~~g~~~~p~v~~~aH 161 (478)
.+++++ +++.| -+|.. |..+.++++||.++|+++ |++|+.+.- ..|+|+++.+...+.|++.+|
T Consensus 38 ~~~~~~~~L~~~-~~~R~~gS~~~~~a~~~l~~~l~~~~~g~~v~~d~f~~~~~~g~~~~~Nvia~~~g~~~~~ivl~aH 116 (330)
T 3pb6_X 38 PQRLWSTYLRPL-LVVRTPGSPGNLQVRKFLEATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLDPRAARHLTLACH 116 (330)
T ss_dssp HHHHHHHTTGGG-CSCCCTTSHHHHHHHHHHHHHHHHSTTCCEEEEEEEEEEETTEEEEEEEEEEESCTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEeeecccccCCccceEEEEEECCCCCceEEEEec
Confidence 455555 55555 33333 455678999999999999 888765321 268999996544688999999
Q ss_pred cccccCCCCCCCCcccccCCeEEeCcc--h-HHHHHHHHHHHHHHhc-----CCCCC--------CCccC--------C-
Q 011730 162 MDALPIQEAVEWEYKSKVAGKMHACGH--D-AHVAMLIGAAKILKSR-----EHLLK--------PAEEA--------G- 216 (478)
Q Consensus 162 lDvVP~~~~~~~Pf~~~~~G~~~g~G~--d-g~~a~~l~aa~~L~~~-----~~~l~--------~dEE~--------g- 216 (478)
+|+||..+. +. ...|. + +++|++|.+++.|.+. +.++. .+||. +
T Consensus 117 ~Dsv~~~~g----------~~-~~~GA~D~asGva~lLe~ar~l~~~~~~~~~~~~~~~i~fv~~~~EE~f~~w~~~~gl 185 (330)
T 3pb6_X 117 YDSKLFPPG----------ST-PFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALKEWGPKDSL 185 (330)
T ss_dssp CCCCCCCTT----------SC-CCCCTTTTHHHHHHHHHHHHHTHHHHHHHHHTTCSEEEEEEEESCCSCSSCCSTTSSC
T ss_pred cCCCCCCCC----------Cc-CcCCCcCChHHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEcCcccccccCCCCCC
Confidence 999984221 01 22343 2 6888999999999863 12222 88887 5
Q ss_pred CcHHHHHHc
Q 011730 217 NGAKRMMAD 225 (478)
Q Consensus 217 ~G~~~l~~~ 225 (478)
.|++.+++.
T Consensus 186 ~GS~~~a~~ 194 (330)
T 3pb6_X 186 YGSRHLAQL 194 (330)
T ss_dssp HHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 388888764
No 50
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*
Probab=98.41 E-value=1.9e-06 Score=85.57 Aligned_cols=128 Identities=17% Similarity=0.208 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhcCCCCCc--chHHHHHHHHHHHHhCCCcEEecc-----------CCceEEEEEcCCCCcEEEEEEccc
Q 011730 97 VDWLKSVRRTIHQNPELAF--QEFETSRLLRAELDRMEIGYKYPL-----------AKTGIRAWVGTGGPPFVALRADMD 163 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s~--~E~~~a~~l~~~L~~~G~~v~~~~-----------~~~~via~~g~~~~p~v~~~aHlD 163 (478)
...+.+++..|. +|...+ ...++++||.+.|+++|++|+... ...|+|+++.++....|++.||+|
T Consensus 37 ~~~~~~~l~~il-~pR~~Gs~~~~~~~~~i~~~l~~~g~~v~~q~f~~~~~~~~~~~~~Nii~~~~~~~~~~i~l~aHyD 115 (330)
T 4fai_A 37 KLHLREAIDKIL-IPRVVGTTNHSIVREYIVQSLRDLDWDVEVNSFHDHAPIKGKLHFHNIIATLNPNAERYLVLSCHYD 115 (330)
T ss_dssp HHHHHHHHHHHC-SCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEESCTTCSEEEEEEEECC
T ss_pred HHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEeeeeeecCCCCceeEEEEEEEECCCCCcEEEEEEeec
Confidence 566777777765 566554 346799999999999999986421 125899998655567899999999
Q ss_pred cccCCCCCCCCcccccCCeEEeCcc--h-HHHHHHHHHHHHHHhc---CCCCC--------CCccCC---------CcHH
Q 011730 164 ALPIQEAVEWEYKSKVAGKMHACGH--D-AHVAMLIGAAKILKSR---EHLLK--------PAEEAG---------NGAK 220 (478)
Q Consensus 164 vVP~~~~~~~Pf~~~~~G~~~g~G~--d-g~~a~~l~aa~~L~~~---~~~l~--------~dEE~g---------~G~~ 220 (478)
+++..+. . .-|+ + .++|++|.+|+.|.+. +.+++ .+||.| .|++
T Consensus 116 s~~~~~~-----------~--~~GA~DnasG~A~lLE~Ar~l~~~~~~~~~p~rtI~fv~fdgEE~Gl~~~~~~~llGS~ 182 (330)
T 4fai_A 116 SKYMPGV-----------E--FLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGAR 182 (330)
T ss_dssp CCCCTTS-----------C--CCCTTTTHHHHHHHHHHHHHTHHHHGGGGTSSEEEEEEEESCCSCSSSCBTTBSCHHHH
T ss_pred ccccccC-----------C--CCCCCCccHhHHHHHHHHHHHHHhhhccCCCCccEEEEEeccccccccccccchhhhhH
Confidence 9984321 1 1344 2 7889999999998753 11222 889976 2888
Q ss_pred HHHHc----CCCCCCcEEEEEe
Q 011730 221 RMMAD----GALEDVEAIFAVH 238 (478)
Q Consensus 221 ~l~~~----g~~~~~D~~i~~~ 238 (478)
++++. +..+++.++|.++
T Consensus 183 ~~a~~~~~~~~~~~i~~~inlD 204 (330)
T 4fai_A 183 HLAKKWHHEGKLDRIDMLVLLD 204 (330)
T ss_dssp HHHHHHHHTTCSTTEEEEEEEC
T ss_pred HHHhcchhccchhceeEEEEec
Confidence 88763 3344555666554
No 51
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Probab=98.39 E-value=4.2e-07 Score=90.56 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=57.2
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEeccCCceEEEEEcCCCCcEEEEEEcccccc
Q 011730 100 LKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALP 166 (478)
Q Consensus 100 l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~~~~~~~via~~g~~~~p~v~~~aHlDvVP 166 (478)
+.+++++|.++|++|+.|.++++++.++|+++|.+++++ ...|++++.++ ++|+|+|.||||+|.
T Consensus 13 ~~~~l~~L~~~pspSG~E~~v~~~i~~~l~~~~~e~~~D-~~Gnvi~~~g~-~~~~v~l~aHmDevG 77 (343)
T 3isx_A 13 MKELIRKLTEAFGPSGREEEVRSIILEELEGHIDGHRID-GLGNLIVWKGS-GEKKVILDAHIDEIG 77 (343)
T ss_dssp CHHHHHHHHHSCCBTTCCHHHHHHHHHHHTTTCSEEEEC-TTCCEEEEECC-CSSEEEEEEECCBCE
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhCCEEEEC-CCCCEEEEECC-CCCEEEEEecccccc
Confidence 467888999999999999999999999999999988765 34589998854 479999999999997
No 52
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=98.34 E-value=2.2e-06 Score=84.46 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhcCCCCCc--chHHHHHHHHHHHHhCCCcEEecc------C-----CceEEEEEcCCCCcEEEEEEcccc
Q 011730 98 DWLKSVRRTIHQNPELAF--QEFETSRLLRAELDRMEIGYKYPL------A-----KTGIRAWVGTGGPPFVALRADMDA 164 (478)
Q Consensus 98 ~~l~~l~~~L~~iPs~s~--~E~~~a~~l~~~L~~~G~~v~~~~------~-----~~~via~~g~~~~p~v~~~aHlDv 164 (478)
.-+-++|..|+ +|...+ ...++++||.++|+++|++|+... . ..|||+++.+...+.|++.||+|+
T Consensus 11 ~~~~~~l~~il-~PR~~gs~~~~~~~~~i~~~l~~~g~~v~~~~f~~~~~~~~~~~~~Nii~~~~~~~~~~vvl~aHyDs 89 (312)
T 4f9u_A 11 VHFNRTLDSIL-VPRVVGSRGHQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGTINPQAQNFLALACHYDS 89 (312)
T ss_dssp HHHHHHHHHHC-SCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEEESTTSSEEEEEEEECCC
T ss_pred HHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEeEEEecCCCCceeEEEEEEEECCCCCceEEEEEEEec
Confidence 34444555554 565544 346799999999999999976421 1 258999996655678999999999
Q ss_pred ccCCCCCCCCcccccCCeEEeCcch-HHHHHHHHHHHHHHhc-----CCCCC--------CCccCC---------CcHHH
Q 011730 165 LPIQEAVEWEYKSKVAGKMHACGHD-AHVAMLIGAAKILKSR-----EHLLK--------PAEEAG---------NGAKR 221 (478)
Q Consensus 165 VP~~~~~~~Pf~~~~~G~~~g~G~d-g~~a~~l~aa~~L~~~-----~~~l~--------~dEE~g---------~G~~~ 221 (478)
++.+... + ..|-..+ .++|++|.+|+.|.+. +.+++ .+||.| .|+++
T Consensus 90 ~~~~~~~---------~-~~GA~DnaSGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~fdaEE~G~~~~~~~~L~GS~~ 159 (312)
T 4f9u_A 90 KYFPNDP---------G-FVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAFKEWTDADSVYGSKH 159 (312)
T ss_dssp CCCTTCT---------T-CCCTTTTHHHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEEESCCSCSSSCSSSSSCHHHHH
T ss_pred CCCCCCC---------C-CCCccCCcccHHHHHHHHHHHHHHHHhhccCCCCceEEEEEecCccccccCCccccccChHH
Confidence 9743210 1 1222223 7889999999999753 12222 888865 27777
Q ss_pred HHHc
Q 011730 222 MMAD 225 (478)
Q Consensus 222 l~~~ 225 (478)
++++
T Consensus 160 ~a~~ 163 (312)
T 4f9u_A 160 LAAK 163 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 53
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=97.21 E-value=0.00072 Score=69.23 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=65.1
Q ss_pred hcCCCCCcchHHHHHHHHHHHH---h--CCCcEEecc----CCceEEEEEcCC-----CCcEEEEEEccccccCCCCCCC
Q 011730 108 HQNPELAFQEFETSRLLRAELD---R--MEIGYKYPL----AKTGIRAWVGTG-----GPPFVALRADMDALPIQEAVEW 173 (478)
Q Consensus 108 ~~iPs~s~~E~~~a~~l~~~L~---~--~G~~v~~~~----~~~~via~~g~~-----~~p~v~~~aHlDvVP~~~~~~~ 173 (478)
..||..+-... .+++|.++|+ + .+++++... ...|+++++.+. +.+.|++.+|+|+|+.
T Consensus 162 ~~IP~~~Is~~-~a~~L~~~l~~~~~g~~~v~l~~~~~~~~~~~Nvi~~~~g~~~~~~~~~~v~~~aH~D~v~~------ 234 (421)
T 2ek8_A 162 SFVAAVGITKQ-EGDALAANLRAGEKITATVKVAGAEVKTLTSHNVIATKKPDANKKNTNDIIIIGSHHDSVEK------ 234 (421)
T ss_dssp TCCEEEEECHH-HHHHHHHHHHTTCCCEEEEEEESCEEEEEEEEEEEEEECCCSSTTCCCCEEEEEEECCCCTT------
T ss_pred CCccEEEeCHH-HHHHHHHHhhhhccCCccccccccccccccccceEEEecCcccCCCCCCEEEEecccccCCC------
Confidence 34555443333 4677888883 2 223332211 136899999431 4689999999999994
Q ss_pred CcccccCCeEEeCcc-h--HHHHHHHHHHHHHHhcCCCCC------CCccCC-CcHHHHHHc
Q 011730 174 EYKSKVAGKMHACGH-D--AHVAMLIGAAKILKSREHLLK------PAEEAG-NGAKRMMAD 225 (478)
Q Consensus 174 Pf~~~~~G~~~g~G~-d--g~~a~~l~aa~~L~~~~~~l~------~dEE~g-~G~~~l~~~ 225 (478)
|+|. | ++++++|.+++.|++...+.. .+||.| .|++.+++.
T Consensus 235 -----------g~Ga~D~~~G~a~~le~~~~l~~~~~~~~i~~~~~~~EE~g~~Gs~~~~~~ 285 (421)
T 2ek8_A 235 -----------APGANDDASGVAVTLELARVMSKLKTDTELRFITFGAEENGLIGSKKYAAS 285 (421)
T ss_dssp -----------CCCTTTTHHHHHHHHHHHHHHTTSCCSSEEEEEEESSSTTTSHHHHHHHTT
T ss_pred -----------CCCCCCCcHhHHHHHHHHHHHhccCCCceEEEEEECCccccchhHHHHHHh
Confidence 2344 2 788889999999987543322 899987 499988875
No 54
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=96.92 E-value=0.0019 Score=66.57 Aligned_cols=91 Identities=25% Similarity=0.253 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhCC-CcEEec--------cCCceEEEEEcCC--CCcEEEEEEccccccCCCCCCCCcccccCCeEEeCc
Q 011730 119 ETSRLLRAELDRME-IGYKYP--------LAKTGIRAWVGTG--GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACG 187 (478)
Q Consensus 119 ~~a~~l~~~L~~~G-~~v~~~--------~~~~~via~~g~~--~~p~v~~~aHlDvVP~~~~~~~Pf~~~~~G~~~g~G 187 (478)
+.++.|...|+.-. ++++.. ....|+++++.+. +.+.|++.+|+|+|+.+ .|
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~~~~~~~~~~~~Nvi~~~~g~~~~~~~i~~~aH~Ds~~~g-----------------~G 266 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLELGSERRGETTSYNVIAEVKGSTKADEIVLIGAHLDSWDEG-----------------TG 266 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEEEEEEEEEEEEEEEEEECCSTEEEEEEEEEEECCCCSSS-----------------CC
T ss_pred HHHHHHHHHHhCCCCeEEEEEEeeeEcCCceeEEEEEEEeCCCCCCCEEEEEeecccCCCC-----------------CC
Confidence 44667777775421 322210 1236999999543 35789999999999842 33
Q ss_pred c--h-HHHHHHHHHHHHHHhcCCCCC--------CCccCC-CcHHHHHHcC
Q 011730 188 H--D-AHVAMLIGAAKILKSREHLLK--------PAEEAG-NGAKRMMADG 226 (478)
Q Consensus 188 ~--d-g~~a~~l~aa~~L~~~~~~l~--------~dEE~g-~G~~~l~~~g 226 (478)
. + ++++++|.+++.|++.+.++. .+||.| .|++.+++..
T Consensus 267 a~D~~sG~a~~le~a~~l~~~~~~~~~~i~f~~~~~EE~gl~Gs~~~~~~~ 317 (444)
T 3iib_A 267 AIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEELGLLGGKTYAKEH 317 (444)
T ss_dssp TTTTHHHHHHHHHHHHHHHTSSSCCSEEEEEEEESCGGGTSHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCcccCCcCHHHHHHhh
Confidence 3 2 678889999999998764433 999987 4999888763
No 55
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A 2pe3_A
Probab=96.52 E-value=0.0031 Score=62.93 Aligned_cols=78 Identities=15% Similarity=0.050 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHH---hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHH
Q 011730 380 NDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSE---VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGA 456 (478)
Q Consensus 380 ~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~---~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~ 456 (478)
.|+.+++.+++++++ .|.+.........||||++.+.. .+|+++++++.. ..|++.|+++++++..++
T Consensus 267 ~~~~l~~~l~~~a~~-~gIp~q~~~~~g~gGtDa~~i~~a~~Gipt~~Igvp~~--------~~Hs~~E~~~~~D~~~~~ 337 (354)
T 2vpu_A 267 INPKLRAFADEVAKK-YEIPLQVEPSPRPTGTDANVMQINKEGVATAVLSIPIR--------YMHSQVELADARDVDNTI 337 (354)
T ss_dssp SCHHHHHHHHHHHHH-TTCCCEEEECCSCCSSTHHHHHTSTTCCEEEEEEEEEB--------STTSTTCEEEHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-cCCCcEEEeCCCCCccHHHHHHHhcCCCCEEEECcccc--------cCcCcceEeeHHHHHHHH
Confidence 578999999999998 48754321122227999999864 489998776653 499999999999999999
Q ss_pred HHHHHHHHHH
Q 011730 457 AVHATIAERF 466 (478)
Q Consensus 457 ~i~a~~~~~l 466 (478)
+++..++.++
T Consensus 338 ~ll~~~l~~l 347 (354)
T 2vpu_A 338 KLAKALLEEL 347 (354)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998765
No 56
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Probab=95.88 E-value=0.01 Score=58.74 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHH---hcccceEEecccCCCCCCCCCCCCCCcccCcCchHHHH
Q 011730 380 NDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSE---VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGA 456 (478)
Q Consensus 380 ~d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~---~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~~~ 456 (478)
.|+.+++.+++++++ .|.+... .....+|||++.+.. .+|+++++++.. ..|++.|+++++++..++
T Consensus 265 ~d~~l~~~l~~~A~~-~gIp~Q~-~v~~ggGTDa~~i~~a~~Gipt~~Igvp~r--------~~Hs~~E~~~~~Di~~~~ 334 (343)
T 3isx_A 265 SSKRILENLIEIAEK-FDIKYQM-EVLTFGGTNAMGYQRTREGIPSATVSIPTR--------YVHSPSEMIAPDDVEATV 334 (343)
T ss_dssp HHHHHHHHHHHHHHH-TTCCCEE-CCCBCCCSSHHHHHHHTSSCCEEEEEEEEB--------STTSTTEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-CCCCeEE-ecCCCCchHHHHHHHhcCCCCEEEEccccc--------cccchhhEecHHHHHHHH
Confidence 578899999999998 4775432 233468999998864 499998877764 499999999999999999
Q ss_pred HHHHHHH
Q 011730 457 AVHATIA 463 (478)
Q Consensus 457 ~i~a~~~ 463 (478)
+++..++
T Consensus 335 ~ll~~~l 341 (343)
T 3isx_A 335 DLLIRYL 341 (343)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 57
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=94.82 E-value=0.034 Score=59.65 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=50.2
Q ss_pred ceEEEEEcCC--CCcEEEEEEccccccCCCCCCCCcccccCCeEEeCcch-HHHHHHHHHHHHHHhc----CCCCC----
Q 011730 142 TGIRAWVGTG--GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD-AHVAMLIGAAKILKSR----EHLLK---- 210 (478)
Q Consensus 142 ~~via~~g~~--~~p~v~~~aHlDvVP~~~~~~~Pf~~~~~G~~~g~G~d-g~~a~~l~aa~~L~~~----~~~l~---- 210 (478)
.||++++.+. +.+.|++.+|+|++.. |...+ .+++++|.+++.|.+. +.++.
T Consensus 267 ~NVi~~i~G~~~~~~~vvvgaH~Ds~~~-----------------Ga~D~~sG~a~lLe~ar~l~~~~~~~g~~p~r~I~ 329 (640)
T 3kas_A 267 LNIFGVIKGFVEPDHYVVVGAQRDAWGP-----------------GAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSII 329 (640)
T ss_dssp EEEEEEECCSSEEEEEEEEEEECCCSSC-----------------CTTTTHHHHHHHHHHHHHHHHHHHTSCCCCSEEEE
T ss_pred EEEEEEEeCCcCCCCceeeecccCCCCC-----------------CCCcCcHHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Confidence 6899999443 4578999999999952 22223 6788899999999874 33333
Q ss_pred ----CCccCC-CcHHHHHHcC
Q 011730 211 ----PAEEAG-NGAKRMMADG 226 (478)
Q Consensus 211 ----~dEE~g-~G~~~l~~~g 226 (478)
.+||.| .|+..++++.
T Consensus 330 f~~~~~EE~gl~GS~~~~~~~ 350 (640)
T 3kas_A 330 FASWSAGDFGSVGATEWLEGY 350 (640)
T ss_dssp EEEESSGGGTSHHHHHHHHHT
T ss_pred EEEECCcccCchhHHHHHHhh
Confidence 889987 4998888763
No 58
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=94.73 E-value=0.044 Score=59.43 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=48.9
Q ss_pred ceEEEEEcCC--CCcEEEEEEccccccCCCCCCCCcccccCCeEEeCcchHHHHHHHHHHHHHHhc---CCCCC------
Q 011730 142 TGIRAWVGTG--GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSR---EHLLK------ 210 (478)
Q Consensus 142 ~~via~~g~~--~~p~v~~~aHlDvVP~~~~~~~Pf~~~~~G~~~g~G~dg~~a~~l~aa~~L~~~---~~~l~------ 210 (478)
.||++++.+. +.+.|++.+|+|+++. | |.+...+++++|.+++.|.+. +.++.
T Consensus 313 ~NVi~~i~G~~~~~~~vllgaH~Ds~~~-------------G---a~D~~sG~a~lLe~ar~l~~~~~~g~~p~r~I~f~ 376 (707)
T 3fed_A 313 YNVVGTIRGSVEPDRYVILGGHRDSWVF-------------G---AIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIFA 376 (707)
T ss_dssp EEEEEEECCSSEEEEEEEEEEECCCSSS-------------C---TTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEE
T ss_pred EEEEEEEeCCCCCCceEEEeccccCCCC-------------C---CccCcHHHHHHHHHHHHHHhhhhccCCCCCCEEEE
Confidence 5899999543 3678999999999973 2 111126788899999998863 33332
Q ss_pred --CCccCC-CcHHHHHHc
Q 011730 211 --PAEEAG-NGAKRMMAD 225 (478)
Q Consensus 211 --~dEE~g-~G~~~l~~~ 225 (478)
.+||.| .|+..++++
T Consensus 377 ~~~~EE~Gl~GS~~~~~~ 394 (707)
T 3fed_A 377 SWDAEEFGLLGSTEWAEE 394 (707)
T ss_dssp EESCGGGTSHHHHHHHHH
T ss_pred EeCCccccchhHHHHHHh
Confidence 889977 488888764
No 59
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}
Probab=86.86 E-value=1.5 Score=44.84 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHHHHHhcCCCcccccC---CCCccchHHHHHH--hcccceEEecccCCCCCCCCCCCCCCcccCcCchH
Q 011730 379 VNDEDMYEHVKKVAIDLLGPMNYRVVP---PMMGAEDFSFYSE--VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLP 453 (478)
Q Consensus 379 ~~d~~l~~~~~~~~~~~~G~~~~~~~~---~~~g~tD~~~~~~--~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~ 453 (478)
..+..+...+++++++. |.+-..... ..++|+|.+.+.. ++|++.++++.. -.|++-|.++.+++.
T Consensus 367 ~~~~~~~~~~~~ia~~~-~Ip~Q~~~~gr~d~~gGstig~i~a~~Gi~tvdiGiP~l--------~MHS~~E~~~~~D~~ 437 (450)
T 2glf_A 367 DAHAEFVARVRKVLNEQ-GVIWQVATLGKVDQGGGGTIAKFFAERGSDVIDMGPALL--------GMHSPFEISSKADLF 437 (450)
T ss_dssp BCCHHHHHHHHHHHHHT-TCCEEECCSSSTTSCCCCCTHHHHHTTTSCEEEEECEEB--------STTSSSEEEEHHHHH
T ss_pred cCCHHHHHHHHHHHHHc-CCCEEEEEeccCCCCCCCcHHHHHhCCCCcEEEechhhc--------ccchHHHHhhHHHHH
Confidence 35788889999999884 764332112 2557777777754 388877555543 499999999999999
Q ss_pred HHHHHHHHHHHH
Q 011730 454 VGAAVHATIAER 465 (478)
Q Consensus 454 ~~~~i~a~~~~~ 465 (478)
.+++++..++.+
T Consensus 438 ~~~~l~~af~~~ 449 (450)
T 2glf_A 438 ETYVAYRSLMEK 449 (450)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 60
>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4
Probab=84.21 E-value=1.1 Score=45.87 Aligned_cols=76 Identities=9% Similarity=-0.076 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHHHHhcCCCcccccCC----CCccchHHHHHH-hcccceEEecccCCCCCCCCCCCCCCcccCcCchH
Q 011730 379 VNDEDMYEHVKKVAIDLLGPMNYRVVPP----MMGAEDFSFYSE-VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLP 453 (478)
Q Consensus 379 ~~d~~l~~~~~~~~~~~~G~~~~~~~~~----~~g~tD~~~~~~-~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~ 453 (478)
..|..+...+++++++. |.+-.....+ ..|+|+...+++ .+|++.++++. ...|++-|.++.+++.
T Consensus 376 ~~~~~~~~~l~~~a~~~-~Ip~Q~~~~~r~d~~~GgT~~~~~a~~Gi~tvdiGiP~--------~~mHS~~E~~~~~Di~ 446 (458)
T 1y7e_A 376 DADAELVSYIRQLLNKN-NIAWQVATLGKVEEGGGGTVAKFLAGYGIRTIDMGPAV--------ISMHSPMEITSKFDLY 446 (458)
T ss_dssp --CHHHHHHHHHHHHHH-TCCEEEEEECC-----CHHHHHHHHHHTCEEEEECCEE--------BSTTSSSEEEEHHHHH
T ss_pred cCCHHHHHHHHHHHHHc-CCCeEEEEeeccCCCCcCcHHHHHhCCCCCEEEEchhh--------cccchHHHHhhHHHHH
Confidence 35788999999999985 7654321111 345666555554 48888754444 3499999999999999
Q ss_pred HHHHHHHHHH
Q 011730 454 VGAAVHATIA 463 (478)
Q Consensus 454 ~~~~i~a~~~ 463 (478)
.+++++..++
T Consensus 447 ~~~~ll~af~ 456 (458)
T 1y7e_A 447 NAYLAYKAFY 456 (458)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 61
>3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea center, M18 peptidase, MH CLAN, tetrahedral aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB: 3var_A 3l6s_A* 4dyo_A*
Probab=82.29 E-value=3.1 Score=42.86 Aligned_cols=79 Identities=10% Similarity=-0.104 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccccC--C-CCccchHHHHH-H-hcccceEEecccCCCCCCCCCCCCCCcccCcCchHH
Q 011730 380 NDEDMYEHVKKVAIDLLGPMNYRVVP--P-MMGAEDFSFYS-E-VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPV 454 (478)
Q Consensus 380 ~d~~l~~~~~~~~~~~~G~~~~~~~~--~-~~g~tD~~~~~-~-~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~ 454 (478)
.|..+...+++++++. |.+-..... . .+|+|+....+ + ++|++.++++.. -.|++-|.++.+++..
T Consensus 404 t~~~~~~~l~~ia~~~-~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tvdIGiP~r--------yMHS~~E~~~~~D~~~ 474 (496)
T 3vat_A 404 SNAVSEALIREVASSV-GVPLQDLMVRNDSPCGTTIGPILASRLGLRVLDLGSPQL--------AMHSIRETACTTGVLQ 474 (496)
T ss_dssp CCHHHHHHHHHHHHHH-TCCCEEECCCTTSCCCCCHHHHHHHHHTCEEEEEECEEE--------STTSSSEEEESHHHHH
T ss_pred cCHHHHHHHHHHHHHc-CCCEEEEEecCCCCCcchHHHHHhcccCCcEEEecHhhh--------ccccHHHHhhHHHHHH
Confidence 4788999999999884 764322111 1 24566665443 2 589987655543 4999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011730 455 GAAVHATIAERFL 467 (478)
Q Consensus 455 ~~~i~a~~~~~ll 467 (478)
+++++..++.++-
T Consensus 475 ~v~Ll~af~~~~~ 487 (496)
T 3vat_A 475 TITLFKGFFELFP 487 (496)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHH
Confidence 9999999987653
No 62
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa}
Probab=81.07 E-value=0.68 Score=47.05 Aligned_cols=76 Identities=11% Similarity=-0.055 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccccCC--CCccchHHHHHH---hcccceEEecccCCCCCCCCCCCCCCcccCcCchHH
Q 011730 380 NDEDMYEHVKKVAIDLLGPMNYRVVPP--MMGAEDFSFYSE---VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPV 454 (478)
Q Consensus 380 ~d~~l~~~~~~~~~~~~G~~~~~~~~~--~~g~tD~~~~~~---~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~ 454 (478)
.|..+.+.+++++++. |.+-...... ..+|+|++.+.. ++|++.++++. ...|++-|.++.+++..
T Consensus 343 ~~~~~~~~l~~~a~~~-~Ip~Q~~~~~~d~~gGsd~g~i~~~~~Gi~tvdiGip~--------~~mHS~~E~~~~~D~~~ 413 (428)
T 2ijz_A 343 TNSETAGFFRHLCQDS-EVPVQSFVTRSDMGCGSTIGPITASQVGVRTVDIGLPT--------FAMHSIRELAGSHDLAH 413 (428)
T ss_dssp CCHHHHTTTTHHHHHT-CCCCCBCCCCSSCCCCCCCSTTTGGGGSCCEEEECCCC--------CSCSSSSCCCCSSHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCCeEEEEEeCCCCccchHHHHHHhCCCCCEEEEchhh--------cccchHHHHhhHHHHHH
Confidence 5788999999999884 7653321111 568899888753 48887644433 34999999999999999
Q ss_pred HHHHHHHHHH
Q 011730 455 GAAVHATIAE 464 (478)
Q Consensus 455 ~~~i~a~~~~ 464 (478)
+++++..++.
T Consensus 414 ~~~ll~af~~ 423 (428)
T 2ijz_A 414 LVKVLGAFYA 423 (428)
T ss_dssp HHTTHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 63
>4eme_A M18 aspartyl aminopeptidase; dnpep/M18/aminopeptidase, protease, hydrolase; 2.60A {Plasmodium falciparum 3D7}
Probab=77.02 E-value=4.6 Score=42.24 Aligned_cols=80 Identities=9% Similarity=-0.164 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhc-----CCCcccccC---CCCccchHHHHH-H-hcccceEEecccCCCCCCCCCCCCCCcccCc
Q 011730 380 NDEDMYEHVKKVAIDLL-----GPMNYRVVP---PMMGAEDFSFYS-E-VVPAAFYYIGIKNETLGSIHTGHSPYFMIDE 449 (478)
Q Consensus 380 ~d~~l~~~~~~~~~~~~-----G~~~~~~~~---~~~g~tD~~~~~-~-~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~ 449 (478)
.++.++..+++++++.. |.+-..... ..+|+|+....+ + ++|++.++++.. -.|++-|.+..
T Consensus 472 tn~~~~~~l~~iA~~~~~~~~~gIP~Q~~v~rnD~~gGgTig~i~~s~~GIpTvdIGiP~r--------yMHS~~E~~~~ 543 (571)
T 4eme_A 472 TSPLHASLIKRTFELYYNKYKQQIKYQNFMVKNDTPCGSTVGSMVAANLSMPGIDIGIPQL--------AMHSIREIAAV 543 (571)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCSSSCCCCCSHHHHHHHHTCCEEEEECEEE--------STTSSSEEEEH
T ss_pred cCHHHHHHHHHHHHhcccccCCCCCEEEEEEcCCCCCcchHHHHHHhCCCCcEEEechhhh--------ccchHHHHhhH
Confidence 36788889998888731 543221111 124666654443 2 589887655543 49999999999
Q ss_pred CchHHHHHHHHHHHHHHH
Q 011730 450 DVLPVGAAVHATIAERFL 467 (478)
Q Consensus 450 ~~l~~~~~i~a~~~~~ll 467 (478)
.++..+++++..++.++-
T Consensus 544 ~Dv~~~vkLl~aFl~~~~ 561 (571)
T 4eme_A 544 HDVFFLIKGVFAFYTYYN 561 (571)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 999999999999987764
No 64
>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4
Probab=75.10 E-value=1.5 Score=44.97 Aligned_cols=51 Identities=12% Similarity=0.017 Sum_probs=34.5
Q ss_pred CcchHHHHHHHHHHHHhCCCc-------------EEeccCCceEEEEE--cCC---CCcEEEEEEcccccc
Q 011730 114 AFQEFETSRLLRAELDRMEIG-------------YKYPLAKTGIRAWV--GTG---GPPFVALRADMDALP 166 (478)
Q Consensus 114 s~~E~~~a~~l~~~L~~~G~~-------------v~~~~~~~~via~~--g~~---~~p~v~~~aHlDvVP 166 (478)
|..++.+.+++.++|++.||. +..... .+.++.+ |.. .++. ++.+|+|.+-
T Consensus 32 spT~~hav~~~~~~l~~~Gf~~l~e~~~l~~g~~~~~~r~-g~~i~a~~~G~~~~~~g~~-ii~AH~Dspg 100 (458)
T 1y7e_A 32 FKTEREVTAYALDKAKKLGFINAEEKKNLMPGDKIFYTCR-EKSVAFAIIGKNPIEDGMN-FIVSHTDSPR 100 (458)
T ss_dssp CCSHHHHHHHHHHHHHTTTCEESTTCCCCCTTCEEECBCS-SSCBCCEECCSSCGGGCCE-ECCCBCCCCB
T ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCeEEEECC-CCEEEEEEeCCCCCCCCcE-EEEEccCcCC
Confidence 667889999999999999986 221111 2344433 432 2345 8999999985
No 65
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}
Probab=71.72 E-value=6.1 Score=40.23 Aligned_cols=62 Identities=15% Similarity=-0.002 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcE-Eec----c--------CCceEEEEE-cCC-CCcEEEEEEcc
Q 011730 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYP----L--------AKTGIRAWV-GTG-GPPFVALRADM 162 (478)
Q Consensus 98 ~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v-~~~----~--------~~~~via~~-g~~-~~p~v~~~aHl 162 (478)
+++++++.. |..++.+.+++.++|++.||.- ... . .+.+++|.. |.. ..+.+++.+|+
T Consensus 21 ~~~~~Fl~~-------s~t~~h~v~~~~~~l~~~Gf~~l~e~~~l~~g~k~~~~r~~~~lia~~~g~~~~~g~~ii~AH~ 93 (450)
T 2glf_A 21 KEYMEFMSK-------AKTERMTVKEIKRILDESGFVPLEDFAGDPMNMTVYAVNRGKAIAAFRVVDDLKRGLNLVVAHI 93 (450)
T ss_dssp HHHHHHHHH-------CSSHHHHHHHHHHHHHTTTCEETTSCCSCTTSBCEEEESSSSCEEEEEBCSCGGGCCEEEEEEC
T ss_pred HHHHHHHHc-------CCCHHHHHHHHHHHHHHCcCEEcccccCCCCCCEEEEEcCCCEEEEEEeCCCCCCCeEEEEEec
Confidence 345555544 6678999999999999999952 110 1 124788876 432 13789999999
Q ss_pred cccc
Q 011730 163 DALP 166 (478)
Q Consensus 163 DvVP 166 (478)
|-+-
T Consensus 94 Dsp~ 97 (450)
T 2glf_A 94 DSPR 97 (450)
T ss_dssp CCCE
T ss_pred ccCC
Confidence 9874
No 66
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa}
Probab=71.46 E-value=1.2 Score=45.16 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=42.8
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHHhCCCc---------------EEeccCCceEEEEE-cCC---CCcEEEEEEcccc
Q 011730 104 RRTIHQNPELAFQEFETSRLLRAELDRMEIG---------------YKYPLAKTGIRAWV-GTG---GPPFVALRADMDA 164 (478)
Q Consensus 104 ~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~---------------v~~~~~~~~via~~-g~~---~~p~v~~~aHlDv 164 (478)
.++++.+=.-|..++.+.+++.++|++.||. +.....+.++++.. |.+ ..+.+++.+|+|.
T Consensus 5 ~~~~~~fl~~~~t~~h~v~~~~~~l~~~Gf~~l~e~~~w~l~~g~k~~~~~~~g~lia~~~G~~~~~~~~~~ii~AH~Ds 84 (428)
T 2ijz_A 5 NQGLIDFLKASPTPFHATASLARRLEAAGYRRLDERDAWHTETGGRYYVTRNDSSLIAIRLGRRSPLESGFRLVGAHTDS 84 (428)
T ss_dssp ---CCCSSTTTHHHHHHHCCSHHHHHHHHHHHSCC--------CCCCEECTTTTCCEEEECC--CCSTTCCEEEECBCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCeEcccccccccCCCCEEEEECCCCEEEEEEECCcCCCCCCcEEEEEcCCc
Confidence 3456666666788999999999999999982 11111225788876 433 2478999999999
Q ss_pred cc
Q 011730 165 LP 166 (478)
Q Consensus 165 VP 166 (478)
+-
T Consensus 85 pg 86 (428)
T 2ijz_A 85 PC 86 (428)
T ss_dssp SE
T ss_pred CC
Confidence 84
No 67
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A
Probab=65.90 E-value=16 Score=34.32 Aligned_cols=87 Identities=15% Similarity=0.042 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHhcCCCcccccCCCCccchHHHHHH-hcccceEEecccC-------------CCCCCCCCCCCCCcc
Q 011730 381 DEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSE-VVPAAFYYIGIKN-------------ETLGSIHTGHSPYFM 446 (478)
Q Consensus 381 d~~l~~~~~~~~~~~~G~~~~~~~~~~~g~tD~~~~~~-~iP~~~~~~G~~~-------------~~~~~~~~~H~~dE~ 446 (478)
++.+.+.+.+.+++ .|..... .....+++|...|.+ ++|++.+..+... .........|++...
T Consensus 175 ~~~l~~~~~~~~~~-~gi~~~~-~~~~~~~sD~~~f~~~Gip~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~yHt~~D~ 252 (284)
T 1tkj_A 175 DPVIEKTFKNYFAG-LNVPTEI-ETEGDGRSDHAPFKNVGVPVGGLFTGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDS 252 (284)
T ss_dssp SHHHHHHHHHHHHH-HTCCCEE-CCSSTTCSTHHHHHHTTCCEEEEECCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCS
T ss_pred CHHHHHHHHHHHHH-cCCCccc-CCCCCCCCchHHHHHCCCCEEEeecCcccccccchhhccccccccCCCCCCCCCcCC
Confidence 56677777777766 4754321 122245688777755 5999876554110 000001358998766
Q ss_pred ---cCcCchHHHHHHHHHHHHHHHhh
Q 011730 447 ---IDEDVLPVGAAVHATIAERFLNE 469 (478)
Q Consensus 447 ---i~~~~l~~~~~i~a~~~~~ll~~ 469 (478)
++.+.+...+++++.++.+|.+.
T Consensus 253 ~~~id~~~l~~~~~~~~~~~~~la~~ 278 (284)
T 1tkj_A 253 LSNINDTALDRNSDAAAHAIWTLSSG 278 (284)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHhcC
Confidence 88899999999999999988754
No 68
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}
Probab=64.56 E-value=7.1 Score=39.89 Aligned_cols=75 Identities=5% Similarity=-0.050 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccccC---C-CCccchHHHHHH-hcccceEEecccCCCCCCCCCCCCCCcccCcCchHH
Q 011730 380 NDEDMYEHVKKVAIDLLGPMNYRVVP---P-MMGAEDFSFYSE-VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPV 454 (478)
Q Consensus 380 ~d~~l~~~~~~~~~~~~G~~~~~~~~---~-~~g~tD~~~~~~-~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~l~~ 454 (478)
.|..+...+++++++. |.+-..... . ..|+|....+++ .+|++.++++.. ..|++-|.+..+++..
T Consensus 380 ~~~~~~~~l~~ia~~~-~Ip~Q~~~~gr~d~~~GgTig~~~a~~Gi~tvdiGiP~l--------~MHS~~E~~~~~Di~~ 450 (461)
T 2glj_A 380 ANPEYIAELRRILSKE-SVNWQTAELGKVDQGGGGTIAYILAEYGMQVIDCGVALL--------NMHAPWEISSKADIYE 450 (461)
T ss_dssp CCHHHHHHHHHHHHHT-CCCEEECCSSSSSSSCCCCTHHHHHTTTCBCCBBCCEEE--------STTSSSEEEEHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCCeEEEeeeccCCCCcccHHHHHhCCCCCEEEEchhhc--------ccchHHHHhhHHHHHH
Confidence 4788899999999984 765332111 1 235665545554 489887554443 4999999999999999
Q ss_pred HHHHHHHHH
Q 011730 455 GAAVHATIA 463 (478)
Q Consensus 455 ~~~i~a~~~ 463 (478)
+++++..++
T Consensus 451 ~~~l~~af~ 459 (461)
T 2glj_A 451 TKNGYSAFL 459 (461)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHH
Confidence 999987653
No 69
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...
Probab=63.77 E-value=27 Score=32.97 Aligned_cols=87 Identities=11% Similarity=0.005 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHhc-CCCcccccCCCCccchHHHHHH-hcccceEEecccCCCCCCCCCCCCCCcccCcCc-----hH
Q 011730 381 DEDMYEHVKKVAIDLL-GPMNYRVVPPMMGAEDFSFYSE-VVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDV-----LP 453 (478)
Q Consensus 381 d~~l~~~~~~~~~~~~-G~~~~~~~~~~~g~tD~~~~~~-~iP~~~~~~G~~~~~~~~~~~~H~~dE~i~~~~-----l~ 453 (478)
++.+.+.+++++++.. +.... ......+++|...|.+ ++|+++++...... .....|++.+.++..+ +.
T Consensus 198 ~~~l~~~l~~~a~~~~~~i~~~-~~~~~~~~sD~~~f~~~GiP~~~~~~~~~~~---~~~~yHt~~Dt~~~~d~~~~~~~ 273 (299)
T 1rtq_A 198 DSNFTQYLTQLMDEYLPSLTYG-FDTCGYACSDHASWHNAGYPAAMPFESKFND---YNPRIHTTQDTLANSDPTGSHAK 273 (299)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEE-EECCSSCCSTHHHHHHTTCCEECEESSCGGG---SCTTTTSTTCCGGGSCTTCHHHH
T ss_pred CchHHHHHHHHHHHhCccCCcc-cCCCCCCCCcHHHHHHCCCCEEEeccccccc---CCCCCCCccccccccCccHHHHH
Confidence 4567777777776632 22211 1122336788777765 59997654321110 0135899988776544 47
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 011730 454 VGAAVHATIAERFLNEYG 471 (478)
Q Consensus 454 ~~~~i~a~~~~~ll~~~~ 471 (478)
..+++++.++.+|.+...
T Consensus 274 ~~~~l~~~~~~~La~~~~ 291 (299)
T 1rtq_A 274 KFTQLGLAYAIEMGSATG 291 (299)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 888999999888876543
No 70
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=53.34 E-value=17 Score=39.29 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=43.2
Q ss_pred hhhHHHHHHHhcCcchHHHHHHHHHHhhcCCCCCcc--hHHHHHHHHHHHHhCCCc-EEe
Q 011730 81 RACSKEVMELARRPETVDWLKSVRRTIHQNPELAFQ--EFETSRLLRAELDRMEIG-YKY 137 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~l~~~L~~iPs~s~~--E~~~a~~l~~~L~~~G~~-v~~ 137 (478)
.++.+.+.+.+ + .+.+.+.++.|-++|..++. +.++++|+.+.|+++|++ ++.
T Consensus 12 ~~l~~~~~~~~--~--~~~i~~~l~~lt~~ph~aGt~~~~~~a~yi~~~~~~~Gl~~v~~ 67 (707)
T 3fed_A 12 QSIRWKLVSEM--K--AENIKSFLRSFTKLPHLAGTEQNFLLAKKIQTQWKKFGLDSAKL 67 (707)
T ss_dssp -CHHHHHHHHC--C--HHHHHHHHHHHSSSCCCTTSHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhC--C--HHHHHHHHHHHhcCCCcCCCHhHHHHHHHHHHHHHHcCCCceeE
Confidence 34667777777 4 55899999999999988874 678899999999999998 654
No 71
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}
Probab=53.11 E-value=3 Score=42.64 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCc-EEec---c-------------CCceEEEEE-cCCC--CcEEE
Q 011730 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIG-YKYP---L-------------AKTGIRAWV-GTGG--PPFVA 157 (478)
Q Consensus 98 ~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~-v~~~---~-------------~~~~via~~-g~~~--~p~v~ 157 (478)
+++++++.. |..++.+.+++.++|++.||+ +... . .+..+++.. |.++ .+.++
T Consensus 25 ~~~~~Fl~~-------spt~~hav~~~~~~l~~sGfe~l~e~~~~~w~l~~g~~~~~~~~g~slia~~~G~~~~~~g~~i 97 (461)
T 2glj_A 25 DRFKNFISN-------CKTERECVTELIKTAEKSGYRNIEDILAKGETLKEGDKVYANNRGKGLIMFLIGKEPLYTGFKI 97 (461)
T ss_dssp HHHHHHHHH-------HHCCSSTHHHHHHHSCCSSCCCTTCCCSTTTTCCTTCCCEEEETTTEEEECCCCSSCGGGCCEE
T ss_pred HHHHHHHHc-------CCCHHHHHHHHHHHHHHcCChhHHHHhhHhhccCCCCEEEEEcCCCEEEEEEeCCcCccCCceE
Confidence 455555555 455667889999999999997 1110 0 122277765 3321 24599
Q ss_pred EEEcccccc
Q 011730 158 LRADMDALP 166 (478)
Q Consensus 158 ~~aHlDvVP 166 (478)
+.+|+|.+-
T Consensus 98 i~AH~Dspg 106 (461)
T 2glj_A 98 LGAHIDSPR 106 (461)
T ss_dssp EEEECCCCB
T ss_pred EEEecCcCC
Confidence 999999984
No 72
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}
Probab=48.70 E-value=31 Score=35.22 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=39.1
Q ss_pred CcEEEEEEEeCCCccceecCcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhc
Q 011730 306 SQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVF 359 (478)
Q Consensus 306 ~~~~~v~~i~gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~ 359 (478)
..++|++++. .-++++++.+++|+++..+.+++.++++++++......
T Consensus 347 ~~S~n~gv~~------~~~~~~~~~~~~R~~~~~~~~~i~~~l~~~~~~~g~~~ 394 (490)
T 3mru_A 347 ETSLNVGVIT------TEENKVTVLCLIRSLIDSGRSQVEGMLQSVAELAGAQI 394 (490)
T ss_dssp EEEEEEEEEE------EETTEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEEEEEE------EeCCEEEEEEEcCCCCchHHHHHHHHHHHHHHHcCCeE
Confidence 4667777664 33788999999999999999999999999998754443
No 73
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=43.99 E-value=17 Score=36.82 Aligned_cols=61 Identities=25% Similarity=0.207 Sum_probs=44.7
Q ss_pred CCCCccchHHHHHH-hcccceEEecccCCCCCCCCCCCCC---CcccCcCchHHHHHHHHHHHHHHHhh
Q 011730 405 PPMMGAEDFSFYSE-VVPAAFYYIGIKNETLGSIHTGHSP---YFMIDEDVLPVGAAVHATIAERFLNE 469 (478)
Q Consensus 405 ~~~~g~tD~~~~~~-~iP~~~~~~G~~~~~~~~~~~~H~~---dE~i~~~~l~~~~~i~a~~~~~ll~~ 469 (478)
....+++|...|.. ++|++.++.....- ....|++ -+.++.+.|.+.+++++.++..+.+.
T Consensus 369 ~~~~~~SD~~~f~~~GiP~~~l~~~~~~~----~~~yHt~~Dt~d~id~~~l~~~~~~~~~~v~~lA~~ 433 (444)
T 3iib_A 369 NKASGGPDVSMLPALGVPVASLRQDGSDY----FDYHHTPNDTLDKINPEALAQNVAVYAQFAWVMANS 433 (444)
T ss_dssp SCCCCCGGGTTSGGGTCCEEEEEECCTTG----GGTTTSTTCCGGGSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCccHHHHHCCCCEEEeecCCCcC----CCCCCCCccccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 44567899887765 59998765432110 1358988 46789999999999999999988764
No 74
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A
Probab=34.46 E-value=3.2e+02 Score=27.83 Aligned_cols=41 Identities=2% Similarity=-0.203 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEe
Q 011730 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKY 137 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~ 137 (478)
.-+-+.+.|+|++.|.---.-...+++..+.+++.|++++.
T Consensus 166 ~a~~~~~aR~L~n~P~n~~tP~~~a~~a~~~~~~~g~~v~V 206 (491)
T 2hc9_A 166 LSESVRETARLIDTPANILTTDALVDEAVKVGNATGSKITV 206 (491)
T ss_dssp HHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhcCCchhCCHHHHHHHHHHHHhhcCcEEEE
Confidence 45678899999999865555567788999999999999875
No 75
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=34.36 E-value=47 Score=31.51 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=41.0
Q ss_pred CccchHHHHHH-hcccceEEecccCCCCCCCCCCCCCC---cccCcCchHHHHHHHHHHHHHHHhh
Q 011730 408 MGAEDFSFYSE-VVPAAFYYIGIKNETLGSIHTGHSPY---FMIDEDVLPVGAAVHATIAERFLNE 469 (478)
Q Consensus 408 ~g~tD~~~~~~-~iP~~~~~~G~~~~~~~~~~~~H~~d---E~i~~~~l~~~~~i~a~~~~~ll~~ 469 (478)
...+|-.-|.. ++|++.++-...+ ..-|++. +.++.+.|..-.++++.++.+||..
T Consensus 241 ~~~SDH~pF~~~GIP~l~~~~~~~~------~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~e~l~~ 300 (312)
T 4f9u_A 241 LVDDDHRPFLDENVPVLHLVATPFP------DVWHTPRDNAANLHWPSIRNFNRVFRNFVYQYLKR 300 (312)
T ss_dssp CCCCTTHHHHTTTCCEEEEECSSCC------TTTTSTTCSGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHCCCCEEEEECCCCC------CCCCCCccChhhCCHHHHHHHHHHHHHHHHHHHhC
Confidence 34567666654 6999876533322 2368875 4678889999999999999999986
No 76
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=33.99 E-value=1.3e+02 Score=21.76 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=41.9
Q ss_pred CcEEEEEEEeccChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCCCCCccCCHHHHHHHHHHHHHhcCCCc
Q 011730 325 DAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMN 400 (478)
Q Consensus 325 ~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~g~~~ev~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~G~~~ 400 (478)
|--++.+|+|..++...+...+.+++.+..+.. -.+.+.+..+ .-....++...+.+.+++ +|...
T Consensus 15 dgqeieidirvstgkeleralqelekalaraga---rnvqitisae------ndeqakelleliarllqk-lgykd 80 (96)
T 2jvf_A 15 DGQEIEIDIRVSTGKELERALQELEKALARAGA---RNVQITISAE------NDEQAKELLELIARLLQK-LGYKD 80 (96)
T ss_dssp TTEEEEEEEECCSSSHHHHHHHHHHHHHHHHTC---SEEEEEEECS------SHHHHHHHHHHHHHHHHH-HTCSE
T ss_pred CCeEEEEEEEEcccHHHHHHHHHHHHHHHhccc---cceEEEEEec------ChHHHHHHHHHHHHHHHH-hCCCc
Confidence 446899999999999988888888877765422 2455555421 101123566666667766 47543
No 77
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=30.73 E-value=59 Score=32.35 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=41.6
Q ss_pred CCccchHHHHHH-hcccceEEecccCCCCCCCCCCCCCCcc---cCcCchHHHHHHHHHHHHHHHhh
Q 011730 407 MMGAEDFSFYSE-VVPAAFYYIGIKNETLGSIHTGHSPYFM---IDEDVLPVGAAVHATIAERFLNE 469 (478)
Q Consensus 407 ~~g~tD~~~~~~-~iP~~~~~~G~~~~~~~~~~~~H~~dE~---i~~~~l~~~~~i~a~~~~~ll~~ 469 (478)
..+++|...|.+ ++|++.+. +... ....|++... ++.+.+...+++++.++.++.+.
T Consensus 342 ~~~~SD~~~F~~~GIP~~~~~-~~~~-----~~~yHt~~Dt~~~i~~~~l~~~~~~~~~~~~~la~~ 402 (421)
T 2ek8_A 342 QEGRSDHESFHALGIPAALFI-HAPV-----EPWYHTPNDTLDKISKEKLDNVADIVGSAVYQAARP 402 (421)
T ss_dssp ECCSSTHHHHHTTTCCEEEEE-EESC-----CTTTTSTTCCGGGBCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCccHHHHHCCCCEEEEE-CCcC-----CCCCCCcccchhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 346788877765 59998543 2211 1247998775 78889999999999999998764
No 78
>3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea center, M18 peptidase, MH CLAN, tetrahedral aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB: 3var_A 3l6s_A* 4dyo_A*
Probab=27.96 E-value=88 Score=32.05 Aligned_cols=53 Identities=21% Similarity=0.168 Sum_probs=35.4
Q ss_pred CCcchHHHHHHHHHHHHhCCCcE-Ee------cc--------CCceEEEEE-cCC---CCcEEEEEEccccc
Q 011730 113 LAFQEFETSRLLRAELDRMEIGY-KY------PL--------AKTGIRAWV-GTG---GPPFVALRADMDAL 165 (478)
Q Consensus 113 ~s~~E~~~a~~l~~~L~~~G~~v-~~------~~--------~~~~via~~-g~~---~~p~v~~~aHlDvV 165 (478)
-|..++.+.+.+.++|++.||.- .+ .. ++..++|.. ++. ....-++.+|.|.-
T Consensus 48 ~spT~~hav~~~~~~L~~aGF~~L~e~~~w~l~~ggkyyv~rn~ssliAf~vg~~~~~~~G~~ivgaHtDSP 119 (496)
T 3vat_A 48 RSPSPFHAVAECRSRLLQAGFHELKETESWDIKPESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSP 119 (496)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCEECCTTSCCCCCTTCEEEEEETTTEEEEEEECTTCCTTCCEEEEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHCcCeEccccCCcccCCCCEEEEECCCcEEEEEEeCCCCCCCCCeEEEEEeccCC
Confidence 36778999999999999999962 11 01 122466653 432 12456789999975
No 79
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp}
Probab=26.61 E-value=1e+02 Score=31.59 Aligned_cols=41 Identities=5% Similarity=0.045 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEe
Q 011730 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKY 137 (478)
Q Consensus 97 ~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~ 137 (478)
..+-+.+.|+|++.|.---.-...++++.+.+++.|++|+.
T Consensus 196 ~a~~~~~aRdL~n~P~n~ltP~~~a~~a~~~~~~~g~~v~V 236 (515)
T 3kzw_A 196 IGQSINLARDFSNMPPNVLTPQTFAEDIVNHFKNTKVKVDV 236 (515)
T ss_dssp HHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHSTTSSCEEEE
T ss_pred HHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHhcCcEEEE
Confidence 56778899999999975556667788888999999999875
No 80
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A*
Probab=25.97 E-value=1.4e+02 Score=30.37 Aligned_cols=42 Identities=7% Similarity=0.087 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCC--CcEEe
Q 011730 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRME--IGYKY 137 (478)
Q Consensus 96 ~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G--~~v~~ 137 (478)
...+-+.+.|+|++.|.---.-...+++..+.++++| ++|+.
T Consensus 159 ~~a~~~~laRdLvn~P~N~~tP~~lA~~a~~l~~~~g~~~~v~V 202 (484)
T 1lam_A 159 LFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFI 202 (484)
T ss_dssp HHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHHcCCceEEEE
Confidence 3567789999999999755555677888899999999 88775
No 81
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=24.17 E-value=54 Score=34.85 Aligned_cols=52 Identities=8% Similarity=0.153 Sum_probs=38.3
Q ss_pred cchhhHHHHHHHhcCcchHHHHHHHHHHhhcC---CCC--CcchHHHHHHHHHHHHhCCCc
Q 011730 79 WSRACSKEVMELARRPETVDWLKSVRRTIHQN---PEL--AFQEFETSRLLRAELDRMEIG 134 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~i---Ps~--s~~E~~~a~~l~~~L~~~G~~ 134 (478)
.++++++.+.+.+ + .+.+.+.++.|.+. |.. +..+.++++||.+.|+++|++
T Consensus 3 ~w~~l~~~l~~~i--~--~~~i~~~L~~Lssd~~~~R~aGT~g~~~aa~yI~~~f~~~Gl~ 59 (640)
T 3kas_A 3 YWDDLKRKLSEKL--D--STDFTSTIKLLNENSYVPREAGSQKDENLALYVENQFREFKLS 59 (640)
T ss_dssp CHHHHHHHHHHHH--H--TCCHHHHHHHTTSTTTSSCCTTSHHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHhC--C--HHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCc
Confidence 4577888888888 3 23566667777662 443 345678999999999999997
No 82
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=23.70 E-value=1.4e+02 Score=29.86 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=46.2
Q ss_pred CceEEEEE--cCCCCcEEEEEEccccccCCCCCCCCcccccCCeEEeCcch-HHHHHHHHHHHHHHhcCCCCC-----CC
Q 011730 141 KTGIRAWV--GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD-AHVAMLIGAAKILKSREHLLK-----PA 212 (478)
Q Consensus 141 ~~~via~~--g~~~~p~v~~~aHlDvVP~~~~~~~Pf~~~~~G~~~g~G~d-g~~a~~l~aa~~L~~~~~~l~-----~d 212 (478)
+..-++++ .+...+.|+|.+|+|+ | + +...+ +++|+++..+++|++...+.. ..
T Consensus 165 G~l~y~e~~ipG~t~~~IllsaH~cH-P--------------~---~ANDNaSG~a~lleLar~l~~~~~~~t~rFvf~p 226 (435)
T 3k9t_A 165 GSLTYGEYYIRGELEEEILLTTYTCH-P--------------S---MCNDNLSGVALITFIAKALSKLKTKYSYRFLFAP 226 (435)
T ss_dssp CEEEEEEEEECCSSSCEEEEEEECCC-C--------------S---CTTTTHHHHHHHHHHHHHHTTSCCSSEEEEEEEC
T ss_pred CceEEEEEEecCCCCCEEEEEEEcCC-C--------------C---CCCccchHHHHHHHHHHHHhcCCCCceEEEEEcC
Confidence 44455555 4444699999999998 4 1 11122 678888888999886543322 33
Q ss_pred ccCCCcHHHHHHcCC--CCCCcEEEEEe
Q 011730 213 EEAGNGAKRMMADGA--LEDVEAIFAVH 238 (478)
Q Consensus 213 EE~g~G~~~l~~~g~--~~~~D~~i~~~ 238 (478)
| ..|+...+.... .+++.+.|.++
T Consensus 227 g--~iGS~~yl~~~~~~l~~i~a~lnLD 252 (435)
T 3k9t_A 227 E--TIGSITWLSRNEDKLKNIKMGLVAT 252 (435)
T ss_dssp T--THHHHHHHHHCGGGGGGEEEEEECC
T ss_pred c--cHHHHHHHHhChHhhhceEEEEEEE
Confidence 3 247776665432 22344555554
No 83
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962 aminopeptidase, hydrolase, manganese, metal-binding, protea structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii}
Probab=23.14 E-value=1e+02 Score=31.29 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCCCcEEe
Q 011730 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKY 137 (478)
Q Consensus 96 ~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G~~v~~ 137 (478)
...+-+.+.|+|++.|.---.-...+++..+.+++.|++|+.
T Consensus 165 ~~a~~~~laRdLvn~P~N~~tP~~~A~~a~~la~~~g~~v~V 206 (482)
T 3ij3_A 165 DWLTTIYLIRDLINTPAEDMGPSELAQAVKHVAKEFEAKVKI 206 (482)
T ss_dssp HHHHHHHHHHHHHHSCGGGSSHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHcCCeEEE
Confidence 355778999999999975555566788888889999998875
No 84
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.66 E-value=81 Score=17.70 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=14.8
Q ss_pred HHHHHHhcCcchHHHHHHHHHHhh
Q 011730 85 KEVMELARRPETVDWLKSVRRTIH 108 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~l~~~L~ 108 (478)
+++-+++ ++++++|.++.+.|.
T Consensus 4 delykel--edlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKEL--EDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHhc
Confidence 4556666 677777777777653
No 85
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Probab=22.33 E-value=1.5e+02 Score=30.26 Aligned_cols=42 Identities=7% Similarity=-0.047 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhCC--CcEEe
Q 011730 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRME--IGYKY 137 (478)
Q Consensus 96 ~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~G--~~v~~ 137 (478)
...+-+.+.|+|++.|.---.-...+++..+.++++| ++|+.
T Consensus 179 ~~a~~~~laRdL~n~P~N~~tP~~lA~~a~~la~~~g~~~~v~V 222 (503)
T 1gyt_A 179 AIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRV 222 (503)
T ss_dssp HHHHHHHHHHHHHHSCTTTCSHHHHHHHHHHHHHHTTTTEEEEE
T ss_pred HHHHHHHHHHHHhcCChhhcCHHHHHHHHHHHHHhcCCceEEEE
Confidence 4667889999999999755555677888899999999 88875
No 86
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*
Probab=20.98 E-value=1e+02 Score=29.57 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=40.8
Q ss_pred CCccchHHHHHH-hcccceEEecccCCCCCCCCCCCCCC---cccCcCchHHHHHHHHHHHHHHHh
Q 011730 407 MMGAEDFSFYSE-VVPAAFYYIGIKNETLGSIHTGHSPY---FMIDEDVLPVGAAVHATIAERFLN 468 (478)
Q Consensus 407 ~~g~tD~~~~~~-~iP~~~~~~G~~~~~~~~~~~~H~~d---E~i~~~~l~~~~~i~a~~~~~ll~ 468 (478)
..+.+|-..|.+ ++|+++++-.... ...|++. +.++.+.+.+.+++++.++.+||.
T Consensus 270 ~~~~SDH~pF~~~GIP~~~~~~~~f~------~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~Eyl~ 329 (330)
T 3pb6_X 270 GSVEDDHIPFLRRGVPVLHLISTPFP------AVWHTPADTEVNLHPPTVHNLCRILAVFLAEYLG 329 (330)
T ss_dssp CCCSCTTHHHHTTTCCEEEEECSSCC------TTTTSTTCSGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCchHhHHHCCCCEEEEEcCCCC------CCCCCCcCchhhCCHHHHHHHHHHHHHHHHHHhc
Confidence 345677766665 6999876532211 2478875 468899999999999999999885
No 87
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A*
Probab=20.22 E-value=1.8e+02 Score=29.63 Aligned_cols=42 Identities=5% Similarity=-0.099 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhC-CCcEEe
Q 011730 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRM-EIGYKY 137 (478)
Q Consensus 96 ~~~~l~~l~~~L~~iPs~s~~E~~~a~~l~~~L~~~-G~~v~~ 137 (478)
...+-+.+.|+|++.|.---.-...+++..+.++++ |++|+.
T Consensus 178 ~~a~~~~~aRdL~n~P~n~~~P~~~a~~a~~l~~~~~g~~v~v 220 (497)
T 3h8g_F 178 AIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEV 220 (497)
T ss_dssp HHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhhcCCceEEE
Confidence 466789999999999975556667788899999998 998875
Done!