BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011731
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H0A|A Chain A, Epsin Enth Bound To Ins(1,4,5)p3
Length = 158
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 98/137 (71%)
Query: 27 EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
E KV +ATSN+PWGP +L+++IA T N + I+ +IWKR+ND GKNWRHVYKA+T+
Sbjct: 21 EIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTL 80
Query: 87 LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
+EYL+ GSERV +E+ Y + TL DFQY+D G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 81 MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 140
Query: 147 IEVRQKAAANRDKFRNT 163
E R A ++K T
Sbjct: 141 REERAHALKTKEKLAQT 157
>pdb|1EYH|A Chain A, Crystal Structure Of The Epsin N-Terminal Homology (Enth)
Domain At 1.56 Angstrom Resolution
Length = 144
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 98/137 (71%)
Query: 27 EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
E KV +ATSN+PWGP +L+++IA T N + I+ +IWKR+ND GKNWRHVYKA+T+
Sbjct: 7 EIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTL 66
Query: 87 LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
+EYL+ GSERV +E+ Y + TL DFQY+D G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 67 MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 126
Query: 147 IEVRQKAAANRDKFRNT 163
E R A ++K T
Sbjct: 127 REERAHALKTKEKLAQT 143
>pdb|1INZ|A Chain A, Solution Structure Of The Epsin N-Terminal Homology (Enth)
Domain Of Human Epsin
Length = 148
Score = 151 bits (382), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 93/124 (75%)
Query: 27 EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
E KV +ATSN+PWGP +L+++IA T N + I+ +IWKR+ND GKNWRHVYKA+T+
Sbjct: 25 EIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTL 84
Query: 87 LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
+EYL+ GSERV +E+ Y + TL DFQY+D G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 85 MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 144
Query: 147 IEVR 150
E R
Sbjct: 145 REER 148
>pdb|1EDU|A Chain A, Crystal Structure Of The Enth Domain Of Rat Epsin 1
Length = 149
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 93/140 (66%)
Query: 27 EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
E KV +ATSN+PWGP +L ++IA T N + I IWKR+ND GKNWRHVYKA T+
Sbjct: 10 EIKVREATSNDPWGPSSSLXSEIADLTYNVVAFSEIXSXIWKRLNDHGKNWRHVYKAXTL 69
Query: 87 LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
EYL+ GSERV +E+ Y + TL DFQY+D G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 70 XEYLIKTGSERVSQQCKENXYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 129
Query: 147 IEVRQKAAANRDKFRNTTAG 166
E R A ++K T
Sbjct: 130 REERAHALKTKEKLAQTATA 149
>pdb|3ONK|A Chain A, Yeast Ent3_enth Domain
pdb|3ONL|A Chain A, Yeast Ent3_enth-Vti1p_habc Complex Structure
pdb|3ONL|B Chain B, Yeast Ent3_enth-Vti1p_habc Complex Structure
Length = 150
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 1/137 (0%)
Query: 26 IEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIND-TGKNWRHVYKAL 84
+E KV +AT+NEPWG TL+ I+Q T N+ E + I+ +I++R + G WR +YKAL
Sbjct: 12 MEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKAL 71
Query: 85 TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKE 144
+L+YL+ HGSER IDD R I L F YIDS GRDQG NVR + ++L+ L++D
Sbjct: 72 QLLDYLIKHGSERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDN 131
Query: 145 RIIEVRQKAAANRDKFR 161
+I R+KA K++
Sbjct: 132 KIRAERKKARETAKKYK 148
>pdb|2QY7|A Chain A, Crystal Structure Of Human Epsinr Enth Domain
pdb|2QY7|B Chain B, Crystal Structure Of Human Epsinr Enth Domain
pdb|2QY7|C Chain C, Crystal Structure Of Human Epsinr Enth Domain
pdb|2V8S|E Chain E, Vti1b Habc Domain - Epsinr Enth Domain Complex
Length = 147
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
Query: 26 IEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKR-INDTGKNWRHVYKAL 84
IE KV +AT+++PWGP G L+ +IA+AT Y ++ ++ ++W R + D KNWR VYK+L
Sbjct: 5 IESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSL 64
Query: 85 TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKE 144
+L YL+ +GSERV+ REH Y + +L ++ ++D G+DQG N+R+K + LV D +
Sbjct: 65 LLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDD 124
Query: 145 RIIEVR 150
R+ E R
Sbjct: 125 RLREER 130
>pdb|1XGW|A Chain A, The Crystal Structure Of Human Enthoprotin N-Terminal
Domain
Length = 176
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 88/132 (66%), Gaps = 1/132 (0%)
Query: 20 VLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKR-INDTGKNWR 78
V+ IE KV +AT+++PWGP G L+ +IA+AT Y ++ ++ ++W R + D KNWR
Sbjct: 29 VMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWR 88
Query: 79 HVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVA 138
VYK+L +L YL+ +GSERV+ REH Y + +L ++ ++D G+DQG N+R+K + LV
Sbjct: 89 RVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVE 148
Query: 139 LVNDKERIIEVR 150
D +R+ E R
Sbjct: 149 FAQDDDRLREER 160
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 25/138 (18%)
Query: 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGV------IWKRINDTGKNWR 78
+ + V AT++E GP L + Q T +M + + +++R T +W
Sbjct: 28 AVSKTVCKATTHEIMGPKKKHLDYLIQCTN-----EMNVNIPQLADSLFER--TTNSSWV 80
Query: 79 HVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGR---DQGSNVRKKSQS 135
V+K+L +L+ +G+ER I + + + LS+F +D SG D + +R+ S+
Sbjct: 81 VVFKSLITTHHLMVYGNERFIQYLASRN-TLFNLSNF--LDKSGLQGYDMSTFIRRYSRY 137
Query: 136 LVALVNDKERIIEVRQKA 153
L E+ + RQ A
Sbjct: 138 L------NEKAVSYRQVA 149
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA 83
+ + V AT++E GP L + Q T + + +++R T +W V+K+
Sbjct: 21 AVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFER--TTNSSWVVVFKS 78
Query: 84 LTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGR---DQGSNVRKKSQSLVALV 140
L +L+ +G+ER I + + + LS+F +D SG D + +R+ S+ L
Sbjct: 79 LITTHHLMVYGNERFIQYLASRN-TLFNLSNF--LDKSGLQGYDMSTFIRRYSRYL---- 131
Query: 141 NDKERIIEVRQKA 153
E+ + RQ A
Sbjct: 132 --NEKAVSYRQVA 142
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA 83
+ + V AT++E GP L + Q T + + +++R T +W V+K+
Sbjct: 28 AVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFER--TTNSSWVVVFKS 85
Query: 84 LTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGR---DQGSNVRKKSQSLVALV 140
L +L+ +G+ER I + + + LS+F +D SG D + +R+ S+ L
Sbjct: 86 LITTHHLMVYGNERFIQYLASRN-TLFNLSNF--LDKSGLQGYDMSTFIRRYSRYL---- 138
Query: 141 NDKERIIEVRQKA 153
E+ + RQ A
Sbjct: 139 --NEKAVSYRQVA 149
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA 83
+ + V AT++E GP L + Q T + + +++R T +W V+K+
Sbjct: 28 AVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFER--TTNSSWVVVFKS 85
Query: 84 LTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGR---DQGSNVRKKSQSLVALV 140
L +L+ +G+ER I + + + LS+F +D SG D + +R+ S+ L
Sbjct: 86 LITTHHLMVYGNERFIQYLASRN-TLFNLSNF--LDKSGLQGYDMSTFIRRYSRYL---- 138
Query: 141 NDKERIIEVRQKA 153
E+ + RQ A
Sbjct: 139 --NEKAVSYRQVA 149
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila
Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila
Ap180
Length = 299
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA 83
G+ + V AT+ E GP L + + + ++ +R + NW VYK+
Sbjct: 23 GLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNA--NWVVVYKS 80
Query: 84 LTVLEYLVAHGSERVI 99
L +L+A+G+ER +
Sbjct: 81 LITTHHLMAYGNERFM 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,923,806
Number of Sequences: 62578
Number of extensions: 337708
Number of successful extensions: 735
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 12
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)