Query 011731
Match_columns 478
No_of_seqs 152 out of 427
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:36:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2056 Equilibrative nucleosi 100.0 8.5E-59 1.8E-63 466.3 24.1 211 5-217 1-214 (336)
2 KOG2057 Predicted equilibrativ 100.0 3.8E-48 8.2E-53 388.1 23.0 180 6-185 4-192 (499)
3 cd03571 ENTH_epsin ENTH domain 100.0 2.9E-48 6.3E-53 343.4 13.1 123 25-147 1-123 (123)
4 PF01417 ENTH: ENTH domain; I 100.0 1.4E-42 3E-47 302.6 14.1 124 23-146 1-125 (125)
5 smart00273 ENTH Epsin N-termin 100.0 1.9E-34 4.1E-39 251.7 12.8 126 24-150 1-127 (127)
6 cd03572 ENTH_epsin_related ENT 99.9 2.8E-26 6E-31 203.7 10.7 114 28-144 4-121 (122)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.9 5.8E-23 1.3E-27 175.9 11.6 113 27-142 2-115 (115)
8 cd03564 ANTH_AP180_CALM ANTH d 99.8 6.6E-19 1.4E-23 152.8 10.5 112 26-140 1-114 (117)
9 PF07651 ANTH: ANTH domain; I 98.8 2.2E-08 4.8E-13 97.3 8.4 112 24-136 2-116 (280)
10 KOG1924 RhoA GTPase effector D 98.5 2E-06 4.4E-11 95.7 16.3 113 43-163 368-486 (1102)
11 KOG0251 Clathrin assembly prot 98.5 5E-07 1.1E-11 96.8 9.5 111 22-136 20-134 (491)
12 PF00790 VHS: VHS domain; Int 98.2 6.8E-06 1.5E-10 73.7 9.1 109 23-140 3-116 (140)
13 smart00288 VHS Domain present 97.9 8.4E-05 1.8E-09 66.6 10.1 108 27-141 2-110 (133)
14 cd03568 VHS_STAM VHS domain fa 97.9 0.00017 3.8E-09 66.0 11.2 107 27-141 2-109 (144)
15 cd03565 VHS_Tom1 VHS domain fa 97.8 0.00023 4.9E-09 64.9 11.6 112 25-141 1-114 (141)
16 cd03569 VHS_Hrs_Vps27p VHS dom 97.8 0.00032 7E-09 64.0 11.5 108 23-141 2-113 (142)
17 cd03561 VHS VHS domain family; 97.7 0.00025 5.4E-09 63.3 10.1 109 27-141 2-111 (133)
18 cd03567 VHS_GGA VHS domain fam 97.6 0.00058 1.2E-08 62.5 11.0 110 26-141 2-115 (139)
19 KOG1924 RhoA GTPase effector D 97.4 0.00027 5.9E-09 79.3 7.3 9 390-398 618-626 (1102)
20 KOG1087 Cytosolic sorting prot 97.1 0.0034 7.4E-08 67.7 10.7 108 26-140 2-110 (470)
21 KOG2199 Signal transducing ada 96.3 0.03 6.5E-07 59.6 10.5 85 23-113 6-97 (462)
22 KOG3671 Actin regulatory prote 91.9 0.52 1.1E-05 51.8 7.7 17 131-147 126-142 (569)
23 KOG1086 Cytosolic sorting prot 89.5 1.1 2.5E-05 48.7 7.6 77 23-105 6-87 (594)
24 cd03562 CID CID (CTD-Interacti 89.1 2.9 6.3E-05 35.9 8.6 103 26-142 4-108 (114)
25 KOG0980 Actin-binding protein 88.9 0.71 1.5E-05 53.5 5.9 107 28-138 9-115 (980)
26 smart00582 RPR domain present 85.5 5.2 0.00011 34.5 8.1 102 41-149 11-119 (121)
27 KOG0132 RNA polymerase II C-te 84.6 4.2 9E-05 47.0 8.8 27 225-252 776-802 (894)
28 KOG3671 Actin regulatory prote 84.4 2.4 5.2E-05 46.8 6.7 12 141-152 123-134 (569)
29 COG5178 PRP8 U5 snRNP spliceos 81.5 1.1 2.4E-05 53.5 3.0 13 320-332 7-19 (2365)
30 PF12755 Vac14_Fab1_bd: Vacuol 79.5 9.3 0.0002 33.1 7.4 75 57-142 23-97 (97)
31 KOG2176 Exocyst complex, subun 77.3 1.5 3.3E-05 50.3 2.4 46 24-76 16-63 (800)
32 KOG4849 mRNA cleavage factor I 73.5 7.8 0.00017 41.5 6.2 20 355-374 303-322 (498)
33 KOG1923 Rac1 GTPase effector F 72.0 11 0.00024 43.6 7.3 33 39-71 14-52 (830)
34 PRK11115 transcriptional regul 70.8 99 0.0022 29.5 12.6 90 1-94 10-103 (236)
35 PF07462 MSP1_C: Merozoite sur 70.6 11 0.00024 42.2 6.7 97 40-160 60-163 (574)
36 KOG1923 Rac1 GTPase effector F 69.4 23 0.00049 41.3 9.0 11 82-92 93-103 (830)
37 KOG1818 Membrane trafficking a 69.3 14 0.00031 42.0 7.4 123 25-160 8-137 (634)
38 PF01603 B56: Protein phosphat 69.1 13 0.00028 39.5 6.7 98 39-143 264-371 (409)
39 PRK15319 AIDA autotransporter- 68.8 7 0.00015 49.0 5.2 10 431-440 1807-1816(2039)
40 KOG2160 Armadillo/beta-catenin 66.9 37 0.00081 36.1 9.5 142 17-159 159-327 (342)
41 PRK15319 AIDA autotransporter- 66.6 8.7 0.00019 48.2 5.4 9 289-297 1645-1653(2039)
42 COG5178 PRP8 U5 snRNP spliceos 65.8 4.7 0.0001 48.7 2.9 11 350-360 22-32 (2365)
43 PF07462 MSP1_C: Merozoite sur 64.1 30 0.00065 38.9 8.5 6 76-81 55-60 (574)
44 KOG2677 Stoned B synaptic vesi 63.4 17 0.00038 41.7 6.6 67 285-351 53-120 (922)
45 COG5602 SIN3 Histone deacetyla 62.6 18 0.00039 42.8 6.6 75 8-84 570-658 (1163)
46 KOG0921 Dosage compensation co 61.9 29 0.00062 41.6 8.1 15 171-185 1185-1199(1282)
47 KOG1488 Translational represso 56.8 1.1E+02 0.0024 34.2 11.3 40 29-71 317-365 (503)
48 KOG0037 Ca2+-binding protein, 54.9 14 0.00031 37.0 3.8 53 27-83 76-132 (221)
49 KOG1925 Rac1 GTPase effector F 53.7 22 0.00047 40.0 5.2 10 322-331 236-245 (817)
50 cd09236 V_AnPalA_UmRIM20_like 53.2 1.7E+02 0.0036 30.6 11.4 67 96-162 151-224 (353)
51 PF12755 Vac14_Fab1_bd: Vacuol 52.4 32 0.0007 29.8 5.2 59 23-92 36-96 (97)
52 KOG0396 Uncharacterized conser 49.2 89 0.0019 33.9 8.7 37 59-95 84-131 (389)
53 KOG1525 Sister chromatid cohes 48.7 71 0.0015 39.3 8.8 121 29-153 409-538 (1266)
54 KOG0921 Dosage compensation co 47.0 94 0.002 37.6 9.1 17 38-54 950-966 (1282)
55 PRK09752 adhesin; Provisional 45.5 24 0.00052 42.9 4.2 11 430-440 1029-1039(1250)
56 COG5218 YCG1 Chromosome conden 45.1 69 0.0015 37.0 7.5 90 41-142 26-120 (885)
57 PF15449 Retinal: Retinal prot 44.5 1.3E+02 0.0028 36.8 9.7 25 126-150 734-758 (1287)
58 KOG0559 Dihydrolipoamide succi 44.4 72 0.0016 34.7 7.2 11 283-293 145-155 (457)
59 PRK07764 DNA polymerase III su 44.1 3.5E+02 0.0077 32.0 13.2 34 80-113 263-298 (824)
60 KOG2675 Adenylate cyclase-asso 42.1 33 0.00071 37.8 4.3 6 276-281 210-215 (480)
61 PF02847 MA3: MA3 domain; Int 40.9 77 0.0017 26.7 5.7 37 57-95 32-68 (113)
62 PF10151 DUF2359: Uncharacteri 40.8 33 0.00071 37.8 4.2 58 60-120 167-232 (469)
63 smart00533 MUTSd DNA-binding d 40.6 1.9E+02 0.0041 28.2 9.1 72 10-88 18-92 (308)
64 PRK14954 DNA polymerase III su 40.3 83 0.0018 35.8 7.3 20 410-430 453-472 (620)
65 cd08915 V_Alix_like Protein-in 40.3 3E+02 0.0065 28.3 10.8 70 93-162 147-222 (342)
66 TIGR02552 LcrH_SycD type III s 39.7 2.3E+02 0.0049 23.8 9.1 103 23-140 33-135 (135)
67 KOG4672 Uncharacterized conser 38.8 86 0.0019 34.5 6.7 19 313-331 323-341 (487)
68 PF06881 Elongin_A: RNA polyme 38.8 32 0.0007 30.0 3.1 42 40-84 18-72 (109)
69 TIGR00624 tag DNA-3-methyladen 38.6 36 0.00077 33.0 3.6 79 32-152 13-91 (179)
70 PF08513 LisH: LisH; InterPro 38.4 40 0.00088 22.9 2.9 20 85-104 6-25 (27)
71 cd03817 GT1_UGDG_like This fam 38.2 37 0.00081 31.9 3.7 30 131-160 332-361 (374)
72 PF05600 DUF773: Protein of un 37.9 1.5E+02 0.0032 33.0 8.6 20 50-69 59-78 (507)
73 cd04962 GT1_like_5 This family 37.9 42 0.0009 32.7 4.0 33 128-160 322-355 (371)
74 PF13949 ALIX_LYPXL_bnd: ALIX 37.7 2.6E+02 0.0057 27.6 9.6 101 57-160 39-171 (296)
75 smart00667 LisH Lissencephaly 37.4 38 0.00082 22.3 2.6 21 85-105 9-29 (34)
76 PF10163 EnY2: Transcription f 36.6 1.3E+02 0.0028 25.5 6.3 48 45-95 2-49 (86)
77 PRK12323 DNA polymerase III su 36.5 5.7E+02 0.012 30.0 13.0 79 81-162 267-345 (700)
78 PRK09752 adhesin; Provisional 36.3 36 0.00077 41.5 3.8 8 291-298 899-906 (1250)
79 KOG0624 dsRNA-activated protei 35.9 3.5E+02 0.0077 29.8 10.6 118 42-160 222-357 (504)
80 KOG4286 Dystrophin-like protei 34.6 2.6E+02 0.0055 33.3 9.9 46 42-90 186-232 (966)
81 PF12717 Cnd1: non-SMC mitotic 34.4 2.4E+02 0.0051 26.3 8.3 53 46-100 9-62 (178)
82 PF08467 Luteo_P1-P2: Luteovir 34.0 58 0.0013 34.6 4.5 41 123-163 138-178 (361)
83 KOG2607 CDK5 activator-binding 34.0 1.8E+02 0.0039 32.3 8.2 52 5-72 28-79 (505)
84 cd03821 GT1_Bme6_like This fam 33.9 56 0.0012 30.6 4.1 32 129-160 332-364 (375)
85 PF01690 PLRV_ORF5: Potato lea 33.5 35 0.00076 37.7 3.0 6 433-438 91-96 (465)
86 cd03820 GT1_amsD_like This fam 33.3 69 0.0015 29.6 4.5 33 128-160 305-337 (348)
87 KOG0218 Mismatch repair MSH3 [ 33.1 2.5E+02 0.0055 33.4 9.5 148 9-163 496-689 (1070)
88 PF07571 DUF1546: Protein of u 32.9 1.4E+02 0.0031 25.5 6.1 51 43-97 27-80 (92)
89 KOG1922 Rho GTPase effector BN 32.5 67 0.0015 37.0 5.2 7 76-82 126-132 (833)
90 PRK15054 nitrate reductase 2 s 31.7 98 0.0021 31.3 5.5 72 6-87 81-157 (231)
91 PF07064 RIC1: RIC1; InterPro 31.6 4.2E+02 0.0091 26.9 10.1 71 24-97 116-196 (258)
92 COG2180 NarJ Nitrate reductase 31.4 1.2E+02 0.0025 29.8 5.8 70 6-85 87-161 (179)
93 PF07174 FAP: Fibronectin-atta 31.2 1.3E+02 0.0028 31.5 6.4 6 420-425 165-170 (297)
94 KOG2049 Translational represso 30.9 3.3E+02 0.0071 30.9 9.9 96 43-143 304-410 (536)
95 PF12238 MSA-2c: Merozoite sur 30.7 1.9E+02 0.0041 28.9 7.2 32 128-159 59-92 (205)
96 PF01213 CAP_N: Adenylate cycl 30.6 17 0.00036 38.0 0.0 9 97-105 154-162 (312)
97 PRK15313 autotransport protein 30.5 66 0.0014 38.5 4.7 8 432-439 724-731 (955)
98 PRK10353 3-methyl-adenine DNA 30.4 71 0.0015 31.3 4.2 20 133-152 73-92 (187)
99 PRK14959 DNA polymerase III su 30.2 2.6E+02 0.0056 32.2 9.1 13 385-397 469-481 (624)
100 KOG2675 Adenylate cyclase-asso 28.7 60 0.0013 35.8 3.7 14 128-141 106-119 (480)
101 smart00346 HTH_ICLR helix_turn 28.4 80 0.0017 25.4 3.6 41 79-119 3-51 (91)
102 PF12612 TFCD_C: Tubulin foldi 28.1 2.4E+02 0.0051 26.8 7.2 42 57-98 123-164 (193)
103 PLN02983 biotin carboxyl carri 27.9 1.2E+02 0.0026 31.6 5.5 7 307-313 136-142 (274)
104 cd03814 GT1_like_2 This family 27.5 74 0.0016 30.1 3.8 33 128-160 318-350 (364)
105 KOG4590 Signal transduction pr 27.3 1E+02 0.0022 33.6 5.1 9 417-425 263-271 (409)
106 KOG1830 Wiskott Aldrich syndro 27.0 2.3E+02 0.005 31.6 7.6 35 74-108 94-130 (518)
107 cd03823 GT1_ExpE7_like This fa 26.9 97 0.0021 29.1 4.4 28 129-156 316-343 (359)
108 PF10337 DUF2422: Protein of u 26.8 6E+02 0.013 27.3 10.8 43 10-52 258-301 (459)
109 PHA03378 EBNA-3B; Provisional 26.5 1.2E+02 0.0026 35.5 5.6 49 315-363 724-776 (991)
110 PLN03131 hypothetical protein; 26.4 1.1E+03 0.024 27.7 14.2 13 87-99 73-85 (705)
111 PF11262 Tho2: Transcription f 26.3 2.9E+02 0.0062 28.4 7.9 40 54-93 212-257 (298)
112 KOG3120 Predicted haloacid deh 25.8 2E+02 0.0044 29.6 6.5 74 50-123 46-143 (256)
113 PF11467 LEDGF: Lens epitheliu 25.7 80 0.0017 28.3 3.4 67 58-138 3-73 (106)
114 PF10428 SOG2: RAM signalling 25.4 3.7E+02 0.008 29.4 9.0 67 3-71 299-369 (445)
115 cd03801 GT1_YqgM_like This fam 25.3 1.1E+02 0.0024 28.1 4.4 26 129-154 328-353 (374)
116 PRK13410 molecular chaperone D 25.3 2.4E+02 0.0053 32.2 7.9 14 128-141 563-576 (668)
117 PF08597 eIF3_subunit: Transla 25.1 1.6E+02 0.0034 29.2 5.7 25 127-153 181-205 (245)
118 PF08167 RIX1: rRNA processing 24.8 3.1E+02 0.0068 25.5 7.3 50 62-111 22-78 (165)
119 PTZ00432 falcilysin; Provision 24.7 4E+02 0.0086 32.5 9.8 31 59-94 534-564 (1119)
120 PRK13410 molecular chaperone D 24.3 3.4E+02 0.0073 31.1 8.7 13 128-140 582-594 (668)
121 KOG1488 Translational represso 24.1 2.8E+02 0.006 31.2 7.8 45 97-141 355-405 (503)
122 PTZ00009 heat shock 70 kDa pro 24.1 2E+02 0.0043 32.6 6.9 48 125-172 568-624 (653)
123 PF13524 Glyco_trans_1_2: Glyc 24.0 1.4E+02 0.003 24.0 4.3 29 128-156 48-76 (92)
124 PF10607 CLTH: CTLH/CRA C-term 24.0 5E+02 0.011 22.8 8.4 53 54-106 15-67 (145)
125 PRK14963 DNA polymerase III su 24.0 5.2E+02 0.011 28.6 9.9 63 30-94 184-271 (504)
126 PF09339 HTH_IclR: IclR helix- 23.8 22 0.00047 26.8 -0.4 26 80-105 2-27 (52)
127 TIGR02135 phoU_full phosphate 23.7 5.5E+02 0.012 23.3 12.1 82 5-90 3-88 (212)
128 TIGR02986 restrict_Alw26I type 23.6 1.9E+02 0.0042 31.7 6.3 25 83-107 345-369 (424)
129 PF03564 DUF1759: Protein of u 23.5 1.1E+02 0.0024 27.0 3.9 58 10-74 9-71 (145)
130 PF12169 DNA_pol3_gamma3: DNA 23.4 4.2E+02 0.0091 23.2 7.6 79 80-160 30-110 (143)
131 PRK00400 hisE phosphoribosyl-A 23.4 2.1E+02 0.0045 25.7 5.5 31 42-72 56-94 (105)
132 PRK07764 DNA polymerase III su 23.2 5.7E+02 0.012 30.3 10.4 10 82-91 217-226 (824)
133 cd05844 GT1_like_7 Glycosyltra 23.2 1.1E+02 0.0024 29.8 4.1 33 128-160 322-355 (367)
134 smart00342 HTH_ARAC helix_turn 23.2 1.5E+02 0.0033 22.4 4.2 46 46-93 4-49 (84)
135 PF05308 Mito_fiss_reg: Mitoch 22.9 1.5E+02 0.0033 30.1 5.2 6 122-127 8-13 (253)
136 TIGR01070 mutS1 DNA mismatch r 22.3 2E+02 0.0043 33.9 6.6 74 10-90 287-363 (840)
137 PF11802 CENP-K: Centromere-as 22.2 1E+02 0.0023 31.9 3.9 77 19-95 162-250 (268)
138 PF14979 TMEM52: Transmembrane 22.2 91 0.002 29.9 3.2 18 286-303 117-134 (154)
139 COG3682 Predicted transcriptio 22.1 3.9E+02 0.0085 24.8 7.2 31 21-51 2-32 (123)
140 PRK15313 autotransport protein 22.1 1.8E+02 0.0038 35.1 6.1 8 290-297 539-546 (955)
141 PRK14136 recX recombination re 22.0 3.6E+02 0.0079 28.6 7.8 47 55-104 253-300 (309)
142 PF14390 DUF4420: Domain of un 21.9 3.4E+02 0.0074 27.6 7.5 29 126-154 225-253 (306)
143 PRK14948 DNA polymerase III su 21.9 2.6E+02 0.0057 31.8 7.3 30 80-109 262-293 (620)
144 KOG0904 Phosphatidylinositol 3 21.8 3.8E+02 0.0082 32.5 8.5 105 42-156 542-654 (1076)
145 PF10978 DUF2785: Protein of u 21.7 2.6E+02 0.0056 26.5 6.2 92 14-109 42-147 (175)
146 PF01213 CAP_N: Adenylate cycl 21.7 34 0.00075 35.7 0.4 21 96-116 76-96 (312)
147 PF12668 DUF3791: Protein of u 20.6 94 0.002 24.6 2.6 44 61-104 6-56 (62)
148 PF02961 BAF: Barrier to autoi 20.6 1.5E+02 0.0032 26.2 3.9 45 57-106 22-68 (89)
149 COG5110 RPN1 26S proteasome re 20.6 2.2E+02 0.0048 32.9 6.2 33 83-115 183-215 (881)
150 PF05600 DUF773: Protein of un 20.5 1E+02 0.0022 34.2 3.7 89 12-101 129-240 (507)
151 COG1458 Predicted DNA-binding 20.3 3.6E+02 0.0077 27.3 6.9 36 127-163 117-153 (221)
152 cd03795 GT1_like_4 This family 20.3 1.7E+02 0.0037 28.0 4.7 29 128-156 318-346 (357)
153 PRK14960 DNA polymerase III su 20.2 5.5E+02 0.012 30.1 9.3 77 80-160 260-338 (702)
154 PF12238 MSA-2c: Merozoite sur 20.2 2.8E+02 0.006 27.8 6.2 6 292-297 131-136 (205)
155 PF10274 ParcG: Parkin co-regu 20.1 3.8E+02 0.0082 26.3 7.0 80 60-141 79-163 (183)
156 PF10168 Nup88: Nuclear pore c 20.0 1E+02 0.0023 35.6 3.7 76 80-163 541-619 (717)
No 1
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.5e-59 Score=466.33 Aligned_cols=211 Identities=48% Similarity=0.744 Sum_probs=188.0
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHH
Q 011731 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKAL 84 (478)
Q Consensus 5 f~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKAL 84 (478)
+.+.+++|||+++|+|++|+++|+||++||+||+|||++++|+|||++||++.+|.+||.||||||+++||+||||||||
T Consensus 1 ~~~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaL 80 (336)
T KOG2056|consen 1 GTMSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKAL 80 (336)
T ss_pred CcccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhccc
Q 011731 85 TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTT 164 (478)
Q Consensus 85 tLLEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky~g~~ 164 (478)
+||||||+||||+||+|||+|+++|++|++|+|+|++|+|+|++||+|||+|+.||+|+++|++||++++++|+||.+++
T Consensus 81 tlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~erLkeeR~~a~~~r~k~~~~~ 160 (336)
T KOG2056|consen 81 TLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDDERLKEERKKARKTRTKFAGFG 160 (336)
T ss_pred HHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccC-CCCCCCCCCCCCCCCcccccCCCC-C-CCCCCCCCccCCCCCCCCCCCC
Q 011731 165 AGGMYR-PGSYSSSGGNGDRYDNDRYEGRYG-N-DDQNGYGREREYGYGYRDDDRS 217 (478)
Q Consensus 165 ~gg~~~-~gs~ss~ggYg~~~d~d~~~~~~g-~-~~~~~~g~~~~~~~~~~d~d~~ 217 (478)
.++++. .++.+++++|+++++..-+...+. . .++..++.+.+|. |......
T Consensus 161 ~~~~~~~~~~~~s~~s~~d~~~~~~~~~~s~e~~~~r~~~~~~~e~~--~~~~~~~ 214 (336)
T KOG2056|consen 161 PGSISNKSNSERSSASYQDDDDSAGPPRTSEEDDQGRPSTSNEEEYE--LQSALSL 214 (336)
T ss_pred CCccccccccccCccccccchhhccCCccccchhhcccccccccchh--hhhhhhh
Confidence 776654 667788999999876421111111 1 4455666666666 6566654
No 2
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.8e-48 Score=388.07 Aligned_cols=180 Identities=32% Similarity=0.681 Sum_probs=163.5
Q ss_pred hhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC--hhhHHHHHHHHHHHhcc-CCCCchhhhh
Q 011731 6 DQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRN--YHEYQMIIGVIWKRIND-TGKNWRHVYK 82 (478)
Q Consensus 6 ~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn--~~~y~~IM~vLwKRL~d-~gKnWR~VyK 82 (478)
...||+|..+++++||||+++|.+||||||+|||||++.+|.|||++||. +++|.++|.+||.|+.+ ..++||+|||
T Consensus 4 m~kVRel~dkandaiMNY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYK 83 (499)
T KOG2057|consen 4 MEKVRELTDKANDAIMNYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYK 83 (499)
T ss_pred hHHHHHHHHHHhHHHhcchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999 89999999999999764 5679999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHH-hhhhh
Q 011731 83 ALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAAN-RDKFR 161 (478)
Q Consensus 83 ALtLLEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkkn-R~Ky~ 161 (478)
+|+||.|||+|||||||.++|+|+|.||.|+.|+|||++|||||+|||+|.|+|+++.+|+++|++||+||+++ ++||+
T Consensus 84 SLiLLaYLikNGSER~VqeAREh~YdLR~LEnYhfiDEhGKDQGINIR~kVKeilEfanDDd~Lq~ERkKAkkddKdKY~ 163 (499)
T KOG2057|consen 84 SLILLAYLIKNGSERFVQEAREHAYDLRRLENYHFIDEHGKDQGINIRHKVKEILEFANDDDLLQAERKKAKKDDKDKYR 163 (499)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhhhCccccccHHHHHHHHHHHhccHHHHHHHHHhhccccchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccCCCccCCCC--C---CCCCCCCCCCC
Q 011731 162 NTTAGGMYRPGS--Y---SSSGGNGDRYD 185 (478)
Q Consensus 162 g~~~gg~~~~gs--~---ss~ggYg~~~d 185 (478)
|+..-.|.++++ . .+-.||...||
T Consensus 164 G~~qd~mggf~~SekydpepkS~wDeeWD 192 (499)
T KOG2057|consen 164 GFDQDDMGGFGSSEKYDPEPKSGWDEEWD 192 (499)
T ss_pred ccchhhccccccccccCCCcccccccccc
Confidence 997654433322 1 23355666554
No 3
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=100.00 E-value=2.9e-48 Score=343.38 Aligned_cols=123 Identities=62% Similarity=1.061 Sum_probs=121.1
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHh
Q 011731 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (478)
Q Consensus 25 ~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~ 104 (478)
++|++|+||||||+|||++++|++||++||++++|.+||++|||||.+++|+||||||||+||||||+|||++||+|+|+
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHH
Q 011731 105 HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERII 147 (478)
Q Consensus 105 hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~Lr 147 (478)
|+++|+.|++|+|+|++|+|+|++||+||++|++||+|+++|+
T Consensus 81 ~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~D~~~L~ 123 (123)
T cd03571 81 NLYIIRTLKDFQYIDENGKDQGINVREKAKEILELLEDDERLR 123 (123)
T ss_pred hHHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHhCCHhhcC
Confidence 9999999999999999999999999999999999999999985
No 4
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=100.00 E-value=1.4e-42 Score=302.55 Aligned_cols=124 Identities=56% Similarity=0.984 Sum_probs=114.5
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHh-ccCCCCchhhhhHHHHHHHHHHhCCHHHHHH
Q 011731 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRI-NDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (478)
Q Consensus 23 ~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL-~d~gKnWR~VyKALtLLEYLLkNGSErvVdd 101 (478)
||++|++|+||||||+|||++++|+|||++||++.+|.+||++||||| ..++++||+|||||+||+|||+||+++||.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 789999999999999999999999999999999999999999999999 8899999999999999999999999999999
Q ss_pred HHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHH
Q 011731 102 IREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146 (478)
Q Consensus 102 lR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~L 146 (478)
+|+|++.|+.|++|+|+|++|+|+|.+||+||++|++||+|+++|
T Consensus 81 ~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~~L 125 (125)
T PF01417_consen 81 LRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDERL 125 (125)
T ss_dssp HHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999999999999999999999999999999999987
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=100.00 E-value=1.9e-34 Score=251.74 Aligned_cols=126 Identities=46% Similarity=0.770 Sum_probs=122.8
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHH
Q 011731 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (478)
Q Consensus 24 S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddl 102 (478)
+++|++|++|||+|+|||++++|.+|+++||++ ..|..||.+||+||.+++ +||+|||||+||+|||+||+++||.|+
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~-~w~~v~KsL~llh~ll~~G~~~~~~~~ 79 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTK-NWRVVYKALILLHYLLRNGSPRVILEA 79 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 578999999999999999999999999999999 899999999999999887 999999999999999999999999999
Q ss_pred HhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHH
Q 011731 103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVR 150 (478)
Q Consensus 103 R~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER 150 (478)
+.|...|+.|.+|+++|++|+|+|.+||++|+.|.+||.|.++|++||
T Consensus 80 ~~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~er 127 (127)
T smart00273 80 LRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLEDDRRLKEER 127 (127)
T ss_pred HHhhHHHhhHhhCeecCCCCeeCcHHHHHHHHHHHHHHcCHHHHhccC
Confidence 999999999999999999999999999999999999999999999987
No 6
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=99.93 E-value=2.8e-26 Score=203.75 Aligned_cols=114 Identities=24% Similarity=0.360 Sum_probs=107.9
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhh-hhHHHHHHHHHHhCCHHHHHHHHhh
Q 011731 28 QKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHV-YKALTVLEYLVAHGSERVIDDIREH 105 (478)
Q Consensus 28 ~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~V-yKALtLLEYLLkNGSErvVddlR~h 105 (478)
.+|++||+||+|||++.+|.|||++||+. ..|.+||++|.|||++++ +|| +|||+||.||+.+|++.|+.|+|.|
T Consensus 4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~---~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 4 SLLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSS---PHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 46899999999999999999999999996 789999999999999875 888 9999999999999999999999999
Q ss_pred hhhhhcccceee-eCC-CCCccchhHHHHHHHHHHhhcCHH
Q 011731 106 SYQISTLSDFQY-IDS-SGRDQGSNVRKKSQSLVALVNDKE 144 (478)
Q Consensus 106 i~~Ir~L~~Fqy-iD~-~GkD~G~nVReKAk~Il~LL~D~e 144 (478)
+++|++|++|++ .|+ +|.+.++.||++|+++++||...+
T Consensus 81 ~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 81 SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 999999999999 688 999999999999999999997653
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.89 E-value=5.8e-23 Score=175.94 Aligned_cols=113 Identities=35% Similarity=0.440 Sum_probs=104.4
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhh
Q 011731 27 EQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (478)
Q Consensus 27 E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~h 105 (478)
|++|.+||+++.|||+..+|.+|++++++. ..+.+||+.|||||.++ +|+++||||+|||||++||.++|..+++.+
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~ 79 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGERFHQEVASN 79 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Confidence 789999999999999999999999999987 56899999999999876 999999999999999999999999999999
Q ss_pred hhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcC
Q 011731 106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVND 142 (478)
Q Consensus 106 i~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D 142 (478)
.+.++.| .|+|.+..|++++.+||+|+++|+++..|
T Consensus 80 ~~~~~l~-~~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 80 DFAVELL-KFDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred HHHHHHH-HhhccccccCCCChHHHHHHHHHHHHHhC
Confidence 8887765 46778778999999999999999998754
No 8
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.78 E-value=6.6e-19 Score=152.79 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=102.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHh
Q 011731 26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (478)
Q Consensus 26 ~E~kVrEATSNDpWGPtgtlL~EIAqaTyn-~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~ 104 (478)
+|+.|+.||++|.|+|..+.|.+|...|++ ...+..||..|++||.+ ++|+++||||+||.+||++|++.|+.+++.
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~--~~w~v~~K~LillH~llr~G~~~~~~~~~~ 78 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD--RNWVVVLKALILLHRLLREGHPSFLQELLS 78 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 378899999999999999999999999999 78899999999999988 799999999999999999999999999999
Q ss_pred hhhhhhcccceeeeCC-CCCccchhHHHHHHHHHHhh
Q 011731 105 HSYQISTLSDFQYIDS-SGRDQGSNVRKKSQSLVALV 140 (478)
Q Consensus 105 hi~~Ir~L~~FqyiD~-~GkD~G~nVReKAk~Il~LL 140 (478)
|...| .|..|.+.+. .+.|+|..||..|+-|.+.|
T Consensus 79 ~~~~l-~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl 114 (117)
T cd03564 79 RRGWL-NLSNFLDKSSSLGYGYSAFIRAYARYLDERL 114 (117)
T ss_pred ccCee-eccccccCCCCCchhhhHHHHHHHHHHHHHH
Confidence 96555 6778888875 68999999999999887765
No 9
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=98.76 E-value=2.2e-08 Score=97.27 Aligned_cols=112 Identities=23% Similarity=0.335 Sum_probs=82.1
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHH
Q 011731 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR 103 (478)
Q Consensus 24 S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR 103 (478)
+++|+-|..||+.+.-.|..+.+..|..+|++......|+..|.+||... ++|.+++|+|+||..||+-|++.|+.++.
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~~~~~~~~~~~l~~Rl~~~-~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSSPESVAFLFWALSRRLPLT-RNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS--SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 46789999999999999999999999999999667889999999999764 58999999999999999999999999998
Q ss_pred hhhhhhhcccceeeeC---CCCCccchhHHHHHHHH
Q 011731 104 EHSYQISTLSDFQYID---SSGRDQGSNVRKKSQSL 136 (478)
Q Consensus 104 ~hi~~Ir~L~~FqyiD---~~GkD~G~nVReKAk~I 136 (478)
.|...+..+..+.-.| ..+.+++.-||.=|+-|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL 116 (280)
T PF07651_consen 81 RYNRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYL 116 (280)
T ss_dssp HTT-----TT---T---SSCHHHHHHHHHHHHHHHH
T ss_pred HcccchhhhccccccccCCccccchhHHHHHHHHHH
Confidence 8877666666554322 23557888888777554
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=2e-06 Score=95.67 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHhccCCC--CchhhhhHHHHH--HHHHHhCCHHHHHHHHhhhhhhhccc--cee
Q 011731 43 GTLLADIAQATRNYHEYQMIIGVIWKRINDTGK--NWRHVYKALTVL--EYLVAHGSERVIDDIREHSYQISTLS--DFQ 116 (478)
Q Consensus 43 gtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gK--nWR~VyKALtLL--EYLLkNGSErvVddlR~hi~~Ir~L~--~Fq 116 (478)
-+++..+-..+.++++..+++++||.-+.+++. .+..|+.-|+|+ +|-++--.-.+|+++-..|.+=+.-. +|.
T Consensus 368 ~el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~ 447 (1102)
T KOG1924|consen 368 EELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFK 447 (1102)
T ss_pred HHHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 456666667788899999999999999998653 444555544444 23333333345555544444333333 354
Q ss_pred eeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhcc
Q 011731 117 YIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (478)
Q Consensus 117 yiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky~g~ 163 (478)
|..- .|.. ..+||+-+.|.+.+++-++||..+-.||-..
T Consensus 448 yr~~--l~id------~~~liD~~vdkak~eeseqkA~e~~kk~~ke 486 (1102)
T KOG1924|consen 448 YRFR--LDID------LTELIDKMVDKAKAEESEQKAAELEKKFDKE 486 (1102)
T ss_pred hhhc--ccCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 1211 4588999999999999999999999998443
No 11
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=5e-07 Score=96.85 Aligned_cols=111 Identities=27% Similarity=0.375 Sum_probs=93.0
Q ss_pred CCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHH
Q 011731 22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (478)
Q Consensus 22 n~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVd 100 (478)
.++.+|+-|..||+.|..+|..+.|..|-.+|-.. ....-++..|-+||... ++|.++||||+||.+||++|.+.|..
T Consensus 20 ~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~T-rnW~VAlKsLIliH~ll~~G~~~f~~ 98 (491)
T KOG0251|consen 20 AGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKT-RNWTVALKALILIHRLLKEGDPSFEQ 98 (491)
T ss_pred hhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCC-cceeehHHHHHHHHHHHhcCcHHHHH
Confidence 46899999999999999999999999999999766 67889999999999876 59999999999999999999999999
Q ss_pred HHHhhhhhhhcccceeeeCC---CCCccchhHHHHHHHH
Q 011731 101 DIREHSYQISTLSDFQYIDS---SGRDQGSNVRKKSQSL 136 (478)
Q Consensus 101 dlR~hi~~Ir~L~~FqyiD~---~GkD~G~nVReKAk~I 136 (478)
++..+- .+=.|.+| .|. .+-|+..-||.=|+-|
T Consensus 99 ~l~~~~-~~l~lS~F--~d~s~~~~~d~safVR~Ya~YL 134 (491)
T KOG0251|consen 99 ELLSRN-LILNLSDF--RDKSSSLTWDMSAFVRTYALYL 134 (491)
T ss_pred HHHhcc-cccchhhh--hcccccccchhhHHHHHHHHHH
Confidence 887766 22233445 333 3668899999666544
No 12
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=98.21 E-value=6.8e-06 Score=73.74 Aligned_cols=109 Identities=19% Similarity=0.173 Sum_probs=80.5
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHH
Q 011731 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (478)
Q Consensus 23 ~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn-~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVdd 101 (478)
.++++.+|.+||+...-.+.-..+-+|++.-.. .....+++..|.|||.. .+-+.++-||+|||+|++||...|-.+
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~--~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKH--GNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 478899999999987777777788889888544 45679999999999988 588999999999999999999998888
Q ss_pred HHh--hhhhhhcccceeeeCCCCCccchh--HHHHHHHHHHhh
Q 011731 102 IRE--HSYQISTLSDFQYIDSSGRDQGSN--VRKKSQSLVALV 140 (478)
Q Consensus 102 lR~--hi~~Ir~L~~FqyiD~~GkD~G~n--VReKAk~Il~LL 140 (478)
+-. -+..|..|-.-.+. +.. ||+|+.+++.-.
T Consensus 81 v~~~~fl~~l~~l~~~~~~-------~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 81 VASKEFLDELVKLIKSKKT-------DPETPVKEKILELLQEW 116 (140)
T ss_dssp HTSHHHHHHHHHHHHHTTT-------HHHSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHccCCC-------CchhHHHHHHHHHHHHH
Confidence 733 33334443322222 222 999988887654
No 13
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=97.91 E-value=8.4e-05 Score=66.61 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhh
Q 011731 27 EQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (478)
Q Consensus 27 E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~h 105 (478)
|.+|.+||+...-.+.-..+.+|++.-... ..-.+.+..|.|||.. ++-+.++.||+|||+|++|+-..|..++-+.
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~--~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~ 79 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNN--KNPHVALLALTLLDACVKNCGSKFHLEVASK 79 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH
Confidence 678999999776677777888888876443 4468999999999995 4788999999999999999999888877543
Q ss_pred hhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 106 i~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
-. +..|... +. .+.....||+|+..++.-..
T Consensus 80 ~f-l~~L~~l--~~--~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 80 EF-LNELVKL--IK--PKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HH-HHHHHHH--Hc--CCCCcHHHHHHHHHHHHHHH
Confidence 22 2222211 11 11111239998888876543
No 14
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=97.85 E-value=0.00017 Score=65.97 Aligned_cols=107 Identities=20% Similarity=0.237 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhh
Q 011731 27 EQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (478)
Q Consensus 27 E~kVrEATSNDpWGPtgtlL~EIAqaTyn-~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~h 105 (478)
|.+|.+||+...-.+.=.++-+|++.--. ...-...|..|.|||.. ++-+.++.||+|||-|++|+-..|-.++-..
T Consensus 2 e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~--~n~~v~l~AL~LLe~~vkNCG~~fh~evask 79 (144)
T cd03568 2 DDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNH--KDPNVQLRALTLLDACAENCGKRFHQEVASR 79 (144)
T ss_pred hHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH
Confidence 78899999976666666788888887543 34578999999999986 4788999999999999999999988887532
Q ss_pred hhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 106 i~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
..+..|... +.. + ....||+|+.+|+.-..
T Consensus 80 -~Fl~eL~kl--~~~--~-~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 80 -DFTQELKKL--IND--R-VHPTVKEKLREVVKQWA 109 (144)
T ss_pred -HHHHHHHHH--hcc--c-CCHHHHHHHHHHHHHHH
Confidence 222223222 111 1 34589999998887664
No 15
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=97.83 E-value=0.00023 Score=64.86 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=77.3
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHH
Q 011731 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR 103 (478)
Q Consensus 25 ~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR 103 (478)
+++.+|.+||+...-.+.=.+.-||++.-... ..-...|..|.|||. ++++-+.++-||+|||-|++||-.+|-.++-
T Consensus 1 ~~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~-~~~n~~v~l~aL~LLe~~vkNCG~~fh~eia 79 (141)
T cd03565 1 PVGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLN-GNKNHKEVMLTLTVLETCVKNCGHRFHVLVA 79 (141)
T ss_pred CHhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 35789999999765555556677777775443 346899999999996 4568889999999999999999999888774
Q ss_pred hhhhhhhc-ccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 104 EHSYQIST-LSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 104 ~hi~~Ir~-L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
.. ..+.. |... +..+ .+.-..|++|+.+|+.-..
T Consensus 80 sk-~Fl~e~L~~~--i~~~-~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 80 KK-DFIKDVLVKL--INPK-NNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HH-HhhhHHHHHH--Hccc-CCCcHHHHHHHHHHHHHHH
Confidence 32 11211 2211 1111 1223478888888776554
No 16
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=97.77 E-value=0.00032 Score=63.95 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=80.7
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHH
Q 011731 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (478)
Q Consensus 23 ~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn-~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVdd 101 (478)
.++.+.+|.+||+...-.+.-.++-+|++.-.. ...-.+.+..|.|||.. ++-+.++-||.|||.|++|+-..|..+
T Consensus 2 ~~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 2 VSEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLS--KNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred cchHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 367899999999976667777778888877543 33568999999999987 578999999999999999998888777
Q ss_pred HHhh--hhhhhc-ccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 102 IREH--SYQIST-LSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 102 lR~h--i~~Ir~-L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
+-+. +..|.. +.. ..-..||+|+..|+.-..
T Consensus 80 vas~~fl~~l~~l~~~---------~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 80 VASREFMDELKDLIKT---------TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HhhHHHHHHHHHHHcc---------cCCHHHHHHHHHHHHHHH
Confidence 6542 222222 222 234689999888887554
No 17
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=97.74 E-value=0.00025 Score=63.29 Aligned_cols=109 Identities=20% Similarity=0.167 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhh
Q 011731 27 EQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (478)
Q Consensus 27 E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~h 105 (478)
+.+|.+||+...-.+.-.++.+|++.-... ..-.+.+..|.|||... +-...+.||.|||.|++||-..|..++-..
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~ 79 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADK 79 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhH
Confidence 567999999755566667788888876443 45789999999999875 788999999999999999999888877664
Q ss_pred hhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 106 i~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
-.+.+ |..+- ... ...-..||+|+.+++.-..
T Consensus 80 ~fl~~-l~~l~--~~~-~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 80 EFLLE-LVKIA--KNS-PKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHH-HHHHh--CCC-CCCCHHHHHHHHHHHHHHH
Confidence 33322 32221 010 1244689999988887654
No 18
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=97.63 E-value=0.00058 Score=62.46 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHh
Q 011731 26 IEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (478)
Q Consensus 26 ~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~ 104 (478)
+|..|..||+.-.-.+.-.++.+|++.-... ..-...+..|.|||+.. +-+.++-||+|||.|++|+-.+|-.++-.
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evas 79 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSP--QEKEALQALTVLEACMKNCGERFHSEVGK 79 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHh
Confidence 6889999999766666667788888775433 34578999999999855 67899999999999999999988877743
Q ss_pred --hhhh-hhcccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 105 --HSYQ-ISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 105 --hi~~-Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
.+.. ++.+.. +| .|...-..||+|..+|+.-..
T Consensus 80 ~~Fl~el~kl~~~-k~---~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 80 FRFLNELIKLVSP-KY---LGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHhcc-cc---CCCCCCHHHHHHHHHHHHHHH
Confidence 2322 233321 12 234445799999998887766
No 19
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.44 E-value=0.00027 Score=79.34 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=5.8
Q ss_pred CCCCCCCCC
Q 011731 390 DEFDPRGSV 398 (478)
Q Consensus 390 ~~~~~~~~~ 398 (478)
..|+|.++.
T Consensus 618 K~~k~e~~M 626 (1102)
T KOG1924|consen 618 KVYKPEVPM 626 (1102)
T ss_pred ccCCCCCcc
Confidence 457777753
No 20
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0034 Score=67.69 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHh
Q 011731 26 IEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (478)
Q Consensus 26 ~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~ 104 (478)
+..+|.+||+..--+|.=.+-.|||+.--.. ....+++..|.|||+.+.. +..|=||+|||=|+||+-+.|=..+-+
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s--~vq~lALtlLE~cvkNCG~~fh~~Va~ 79 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNS--KVQLLALTLLETCVKNCGYSFHLQVAS 79 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCc--HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4678999999766666667778888876433 3467999999999998754 788889999999999999887655543
Q ss_pred hhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhh
Q 011731 105 HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALV 140 (478)
Q Consensus 105 hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL 140 (478)
--.+=+.++.|++.. .-..||+|+-.||+.=
T Consensus 80 k~fL~emVk~~k~~~-----~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 80 KEFLNEMVKRPKNKP-----RDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHhccccCC-----cchhHHHHHHHHHHHH
Confidence 222223444554331 4578999988887753
No 21
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=96.27 E-value=0.03 Score=59.62 Aligned_cols=85 Identities=26% Similarity=0.342 Sum_probs=65.8
Q ss_pred CchHHHHHHHHhc----CCCCCCCHHHHHHHHHH-hcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHH
Q 011731 23 VPGIEQKVLDATS----NEPWGPHGTLLADIAQA-TRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSER 97 (478)
Q Consensus 23 ~S~~E~kVrEATS----NDpWGPtgtlL~EIAqa-Tyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSEr 97 (478)
.+++|..|..||+ +|+|+ ++-+||+. +-+.+--+..|+.|.|||+.. .-.+|+-||+||+=|+.|+-.+
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~----~IlDvCD~v~~~~~~~kd~lk~i~KRln~~--dphV~L~AlTLlda~~~NCg~~ 79 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWS----LILDVCDKVGSDPDGGKDCLKAIMKRLNHK--DPHVVLQALTLLDACVANCGKR 79 (462)
T ss_pred cchHHHHHHHhcCcccccccHH----HHHHHHHhhcCCCcccHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHhcchH
Confidence 5789999999998 47884 45556655 344455678899999999876 5678999999999999999999
Q ss_pred HHHHHHh--hhhhhhccc
Q 011731 98 VIDDIRE--HSYQISTLS 113 (478)
Q Consensus 98 vVddlR~--hi~~Ir~L~ 113 (478)
|..++.. .+..|+.|-
T Consensus 80 ~r~EVsSr~F~~el~al~ 97 (462)
T KOG2199|consen 80 FRLEVSSRDFTTELRALI 97 (462)
T ss_pred HHHHHhhhhHHHHHHHHH
Confidence 9988844 444455554
No 22
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=91.87 E-value=0.52 Score=51.75 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=9.3
Q ss_pred HHHHHHHHhhcCHHHHH
Q 011731 131 KKSQSLVALVNDKERII 147 (478)
Q Consensus 131 eKAk~Il~LL~D~e~Lr 147 (478)
+-|++..++|+|...-+
T Consensus 126 ~EA~~F~k~V~~r~~~~ 142 (569)
T KOG3671|consen 126 EEAQKFRKKVQDRICHR 142 (569)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 44666666666444333
No 23
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=1.1 Score=48.74 Aligned_cols=77 Identities=21% Similarity=0.402 Sum_probs=45.3
Q ss_pred CchHHHHHHHHhc----CCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHH
Q 011731 23 VPGIEQKVLDATS----NEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSER 97 (478)
Q Consensus 23 ~S~~E~kVrEATS----NDpWGPtgtlL~EIAqaTyn-~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSEr 97 (478)
.-.+|..|..||+ .+.|-. ++-|++.-+. .+.-..-+..|...|. +..+|-.++ +|++||||++||-++
T Consensus 6 ~~sle~wlnrATdp~~~eedw~a----i~~fceqinkdp~gp~lAv~LlaHKiq-SPqe~EAl~-altvLe~cmkncGek 79 (594)
T KOG1086|consen 6 VESLEYWLNRATDPSNDEEDWKA----IDGFCEQINKDPEGPLLAVRLLAHKIQ-SPQEWEALQ-ALTVLEYCMKNCGEK 79 (594)
T ss_pred cccHHHHHHhccCccchHHHHHH----HHHHHHHHhcCCCCchhHHHHHHhhcC-ChhHHHHHH-HHHHHHHHHHhhhHH
Confidence 3467888888887 234522 3333333222 1111223333334443 346887654 899999999999999
Q ss_pred HHHHHHhh
Q 011731 98 VIDDIREH 105 (478)
Q Consensus 98 vVddlR~h 105 (478)
|=+++-..
T Consensus 80 fH~evgkf 87 (594)
T KOG1086|consen 80 FHEEVGKF 87 (594)
T ss_pred HHHHHHHH
Confidence 87776443
No 24
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=89.06 E-value=2.9 Score=35.93 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHh
Q 011731 26 IEQKVLDATSNEPWGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (478)
Q Consensus 26 ~E~kVrEATSNDpWGPtgtlL~EIAqaT-yn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~ 104 (478)
.+..+++-|.+. .+...++.|+.+. .+......|+++|.++|..... .+.+-.|-|++=+++|.-......+..
T Consensus 4 ~~~~l~~L~~~~---~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~--~~KL~~LYL~dsIvkn~~~~~~~~~~~ 78 (114)
T cd03562 4 YNALLEKLTFNK---NSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPP--EQKLPLLYLLDSIVKNVGRKYKEFFSE 78 (114)
T ss_pred HHHHHHHHHcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--ccchHHHHHHHHHHHHcccchHHHHHH
Confidence 344556666666 4445555555554 3346778999999999977533 778899999999999977666665555
Q ss_pred hh-hhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcC
Q 011731 105 HS-YQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVND 142 (478)
Q Consensus 105 hi-~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D 142 (478)
.+ .++. .-|+- ....+|+|.++|+++-++
T Consensus 79 ~~~~~f~--~~~~~-------~~~~~r~kl~rl~~iW~~ 108 (114)
T cd03562 79 FLVPLFL--DAYEK-------VDEKTRKKLERLLNIWEE 108 (114)
T ss_pred HHHHHHH--HHHHh-------CCHHHHHHHHHHHHHccC
Confidence 42 1121 11221 234788888888876543
No 25
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.89 E-value=0.71 Score=53.50 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=84.0
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhhhh
Q 011731 28 QKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSY 107 (478)
Q Consensus 28 ~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~hi~ 107 (478)
.-|+.|+|.+...|-.++..-|.-.|++.+.-...+.+ .|||--. .+-...+|.|.||.=||+-|.+.++.+...|..
T Consensus 9 ~av~KAis~~Et~~K~KH~Rt~I~gTh~eksa~~FWt~-ik~~PL~-~~~VltwKfchllHKvLreGHpsal~es~r~r~ 86 (980)
T KOG0980|consen 9 EAVQKAISKDETPPKRKHVRTIIVGTHDEKSSKIFWTT-IKRQPLE-NHEVLTWKFCHLLHKVLREGHPSALEESQRYKK 86 (980)
T ss_pred HHHHHHhccccCCCchhhhhheeeeecccccchhHHHH-hhccccc-cchHHHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 45889999999999999999999999997665443333 3444322 256778999999999999999999999999999
Q ss_pred hhhcccceeeeCCCCCccchhHHHHHHHHHH
Q 011731 108 QISTLSDFQYIDSSGRDQGSNVRKKSQSLVA 138 (478)
Q Consensus 108 ~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~ 138 (478)
-|+.|.++--.- -+++|.-||.-+|-|..
T Consensus 87 ~i~~l~r~w~~l--s~~Yg~lI~~Y~klL~~ 115 (980)
T KOG0980|consen 87 WITQLGRMWGHL--SDGYGPLIRAYVKLLHD 115 (980)
T ss_pred HHHHHHHHhccc--cccchHHHHHHHHHHHH
Confidence 999998763221 16899999988866554
No 26
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=85.46 E-value=5.2 Score=34.53 Aligned_cols=102 Identities=9% Similarity=0.110 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHhc-ChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhhhhh-hhcccceeee
Q 011731 41 PHGTLLADIAQATR-NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQ-ISTLSDFQYI 118 (478)
Q Consensus 41 PtgtlL~EIAqaTy-n~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~hi~~-Ir~L~~Fqyi 118 (478)
++...+..++.+.- +.+....|+++|.+.+.....+ +.+-.|-|++-+|+|+.......++..+.. |.. -|..+
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~--~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~--~~~~~ 86 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPP--RKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQD--ALRDV 86 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--ceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHH--HHHHH
Confidence 56666667766664 4456689999999999775443 566789999999999876543433332211 110 12212
Q ss_pred CCCCCccchhHHHHHHHHHHhhcC-----HHHHHHH
Q 011731 119 DSSGRDQGSNVRKKSQSLVALVND-----KERIIEV 149 (478)
Q Consensus 119 D~~GkD~G~nVReKAk~Il~LL~D-----~e~LreE 149 (478)
..... ..+|+|..+|+++=.+ ++.|+.-
T Consensus 87 ~~~~~---~~~~~ki~kll~iW~~~~iF~~~~i~~L 119 (121)
T smart00582 87 LGAAN---DETKKKIRRLLNIWEERGIFPPSVLRPL 119 (121)
T ss_pred HHhCC---HHHHHHHHHHHHHHhcCCCCCHHHHHHh
Confidence 11111 5789999999998554 5555443
No 27
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=84.58 E-value=4.2 Score=47.02 Aligned_cols=27 Identities=52% Similarity=0.818 Sum_probs=21.7
Q ss_pred CCCCCccCccchhhccCCCCCCCCCCCC
Q 011731 225 SRDGDRYGRDYEDRYSRDVYRDDDYRGR 252 (478)
Q Consensus 225 ~~~~~~~~r~~~~~y~r~g~~~~~~~~~ 252 (478)
++.+++--|| -||||-++.|||+||.+
T Consensus 776 ~~~g~~g~~~-Rer~G~~~~Rd~~~Rd~ 802 (894)
T KOG0132|consen 776 RRQGDRGARD-RERYGNDDRRDDSNRDR 802 (894)
T ss_pred cccccccchh-hhhhcCCcccccccccc
Confidence 6667777777 78899999999999943
No 28
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=84.43 E-value=2.4 Score=46.78 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=5.2
Q ss_pred cCHHHHHHHHHH
Q 011731 141 NDKERIIEVRQK 152 (478)
Q Consensus 141 ~D~e~LreER~K 152 (478)
-|++.-++-|++
T Consensus 123 ~~E~EA~~F~k~ 134 (569)
T KOG3671|consen 123 ASEEEAQKFRKK 134 (569)
T ss_pred cCHHHHHHHHHH
Confidence 344444444443
No 29
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=81.46 E-value=1.1 Score=53.53 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=5.1
Q ss_pred CCCCCCCCCCCCC
Q 011731 320 GPPGVLPPPARLG 332 (478)
Q Consensus 320 ~~p~~~~p~~~~~ 332 (478)
|-|++||||||-+
T Consensus 7 g~ppppppppg~e 19 (2365)
T COG5178 7 GNPPPPPPPPGFE 19 (2365)
T ss_pred CCCcccccCCCCC
Confidence 3333334444333
No 30
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=79.51 E-value=9.3 Score=33.08 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHH
Q 011731 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSL 136 (478)
Q Consensus 57 ~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~I 136 (478)
+.+..|+..|.+.+.+. +||.=|=|.--|-.|++..-+.++..+-+-...|-.|. .|...+||.-|+.|
T Consensus 23 ~~l~~Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~---------~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQ--DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLS---------ADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCCchhHHHHHHHH
Confidence 45789999999999887 89999999999999999888877765544333332221 24557899999999
Q ss_pred HHhhcC
Q 011731 137 VALVND 142 (478)
Q Consensus 137 l~LL~D 142 (478)
-.||.|
T Consensus 92 d~llkd 97 (97)
T PF12755_consen 92 DRLLKD 97 (97)
T ss_pred HHHhcC
Confidence 999986
No 31
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.30 E-value=1.5 Score=50.32 Aligned_cols=46 Identities=20% Similarity=0.420 Sum_probs=35.4
Q ss_pred chHHHHHH--HHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCC
Q 011731 24 PGIEQKVL--DATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKN 76 (478)
Q Consensus 24 S~~E~kVr--EATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKn 76 (478)
+..|..|. |+|+.+.|||+ -+..|+...-..+|+.|..|+.+++++
T Consensus 16 ~~~eril~~~estDtd~~gP~-------lRs~~d~~~~~~~~e~Le~~ir~~d~E 63 (800)
T KOG2176|consen 16 EEHERILLEIESTDTDDWGPT-------LRSVYDGNQHKPVMEKLENRIRNHDKE 63 (800)
T ss_pred HHHHHHHHHHhccchhhhhhH-------HHHHHccCCcchHHHHHHHHHHhhHHH
Confidence 44555554 88899999997 556677778889999999998877665
No 32
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=73.46 E-value=7.8 Score=41.54 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCCCCCCcc
Q 011731 355 PAAPGASSPPASHNPNQATN 374 (478)
Q Consensus 355 p~~~~~~~~~~~~~~~~~~~ 374 (478)
-++|+|..|+.++|+..+.+
T Consensus 303 gppPga~pPaph~NpaffpP 322 (498)
T KOG4849|consen 303 GPPPGAGPPAPHNNPAFFPP 322 (498)
T ss_pred CCCCCCCCCCcccCcccCCC
Confidence 46788888888888755443
No 33
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=71.96 E-value=11 Score=43.63 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHhcChhh------HHHHHHHHHHHhc
Q 011731 39 WGPHGTLLADIAQATRNYHE------YQMIIGVIWKRIN 71 (478)
Q Consensus 39 WGPtgtlL~EIAqaTyn~~~------y~~IM~vLwKRL~ 71 (478)
.|++....+.||.-+-+..- ....+.++|++..
T Consensus 14 v~s~p~A~~~ia~S~~~~n~rtktsvl~~lasic~v~gg 52 (830)
T KOG1923|consen 14 VGSVPPAIACIANSSKHTNLRTKTSVLGSLASICYVIGG 52 (830)
T ss_pred CCCCchHHHHhhHhhccCCcchHHHHHHHHHHHHHHhcC
Confidence 45666666777666555432 2456666676654
No 34
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=70.78 E-value=99 Score=29.46 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=56.1
Q ss_pred ChhhhhhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhh-HHHHHHHHHHHhc---cCCCC
Q 011731 1 MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHE-YQMIIGVIWKRIN---DTGKN 76 (478)
Q Consensus 1 ~kkvf~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~-y~~IM~vLwKRL~---d~gKn 76 (478)
|.+.|+..+..+++.+.++.-.+-.+=.++.+|.-+.. .....+|.+.-...+. +.+|.+.+.+-+. ...+.
T Consensus 10 ~~~~~~~~l~~~~~el~~M~~~v~~ml~~~~~al~~~d----~~~~~~i~~~e~~id~l~~~I~~~l~~~l~~~~~~~~d 85 (236)
T PRK11115 10 ISGQFNAELESIRTQVLTMGGLVEQQLSDAITAMHNQD----AELAKRVIEGDHKVNMMEVAIDEACVRIIAKRQPTASD 85 (236)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence 45678889999999888864433333334455553332 4566677666555544 3466666666652 23457
Q ss_pred chhhhhHHHHHHHHHHhC
Q 011731 77 WRHVYKALTVLEYLVAHG 94 (478)
Q Consensus 77 WR~VyKALtLLEYLLkNG 94 (478)
+|.+.-.|.++.+|=+=|
T Consensus 86 ~~~~~~~~~i~~~lERIg 103 (236)
T PRK11115 86 LRLVMAIIKTIADLERIG 103 (236)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888877774433
No 35
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=70.64 E-value=11 Score=42.18 Aligned_cols=97 Identities=20% Similarity=0.320 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHH-HH-----HhCCHHHHHHHHhhhhhhhcc
Q 011731 40 GPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEY-LV-----AHGSERVIDDIREHSYQISTL 112 (478)
Q Consensus 40 GPtgtlL~EIAqaTyn-~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEY-LL-----kNGSErvVddlR~hi~~Ir~L 112 (478)
|---..|.+..+.+++ +..|..=++.|.+.=+.-. +.+.-.|-|++|.- |+ .|++-. .|
T Consensus 60 ~~eI~~LK~~~q~s~d~y~kYKLKLeR~~~Kk~ki~-~sk~~ik~lt~lK~~L~~r~n~lN~p~~-------------vl 125 (574)
T PF07462_consen 60 GEEIEELKKKIQVSLDHYGKYKLKLERLLKKKNKIS-NSKEQIKKLTILKNKLERRQNLLNNPTS-------------VL 125 (574)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcHH-------------HH
Confidence 3334555566666665 3456655555555433322 23334455665542 22 233333 34
Q ss_pred cceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
Q 011731 113 SDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (478)
Q Consensus 113 ~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky 160 (478)
+.|.....+-+. . + -++|-..|.+.+.|-..= +-|-||
T Consensus 126 ~n~~vfFnKkrE--a---e-k~eveNtlkNt~iLlkyY----Ka~~Ky 163 (574)
T PF07462_consen 126 KNFTVFFNKKRE--A---E-KKEVENTLKNTEILLKYY----KARAKY 163 (574)
T ss_pred HHHHHHHhhhhH--H---H-HHHHHHHhhhHHHHHHHH----HHHHHH
Confidence 455322211111 0 1 246778888888875443 345565
No 36
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=69.35 E-value=23 Score=41.28 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=7.8
Q ss_pred hHHHHHHHHHH
Q 011731 82 KALTVLEYLVA 92 (478)
Q Consensus 82 KALtLLEYLLk 92 (478)
++|+...+.+.
T Consensus 93 a~lQf~~ifv~ 103 (830)
T KOG1923|consen 93 AKLQFYDVFVG 103 (830)
T ss_pred HHHHHHHHHhc
Confidence 77777776665
No 37
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.29 E-value=14 Score=42.00 Aligned_cols=123 Identities=19% Similarity=0.120 Sum_probs=79.7
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHH-
Q 011731 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI- 102 (478)
Q Consensus 25 ~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddl- 102 (478)
..+.++..||+.+..-.+-...-+|.+....- .....-|..|.||++ ..+-+...=+|.|+++.++||-.-|..++
T Consensus 8 ~~~~l~~~at~~~~~~~~~e~~~e~~d~ir~~~~~~k~slr~~~~~i~--h~np~~~~~~~~~~d~cvkn~G~gv~~ei~ 85 (634)
T KOG1818|consen 8 AFKRLIEKATSETLGSGDWEAILEISDMIRSGGVPPKPSLRGIKKRID--HENPNVQLFTLKLTDHCVKNCGHGVHCEIA 85 (634)
T ss_pred HHHhhhhhhhhhhhcCcchhhhhhHHHHHHhcCCCCchhHHHHHHHHh--ccCCCcccchhhhHHHHHhcCCcchhHHHH
Confidence 34566778888776555556666777765443 345667888888887 55788888899999999999876666665
Q ss_pred -HhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHh----hcCHHHHHHHHHHHHHHhhhh
Q 011731 103 -REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVAL----VNDKERIIEVRQKAAANRDKF 160 (478)
Q Consensus 103 -R~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~L----L~D~e~LreER~KAkknR~Ky 160 (478)
|+.+..|..|-.=+-++ .+||+|...|+.- +.++ .+++....+.+|+
T Consensus 86 tre~m~~~~~~l~~~~~~-------e~v~~~~l~~~q~wa~af~~~----~~~~~v~~t~~~l 137 (634)
T KOG1818|consen 86 TREFMDLLKSLLESQRIH-------EEVKNKILELIQNWAAAFRNS----SKYSYVLDTYQKL 137 (634)
T ss_pred HHHHHHHHHhhhcccccc-------chHHHHHHHHHHHHHHHccCc----hHHHHHHHHHHHH
Confidence 56666666554332133 3666666665543 3333 4445555555554
No 38
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=69.14 E-value=13 Score=39.54 Aligned_cols=98 Identities=18% Similarity=0.305 Sum_probs=61.3
Q ss_pred CCCCHHH-----HHHHHHH--hcChhhHHHHHHHHHHHhcc--CCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhhhhhh
Q 011731 39 WGPHGTL-----LADIAQA--TRNYHEYQMIIGVIWKRIND--TGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQI 109 (478)
Q Consensus 39 WGPtgtl-----L~EIAqa--Tyn~~~y~~IM~vLwKRL~d--~gKnWR~VyKALtLLEYLLkNGSErvVddlR~hi~~I 109 (478)
|.-+... |.||... .....++..|+..|++||.. ...++...-.||.++. .+.++..+.+|...|
T Consensus 264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~------n~~~~~li~~~~~~i 337 (409)
T PF01603_consen 264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN------NEYFLSLISQNSRVI 337 (409)
T ss_dssp S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG------SHHHHHHHHCTHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC------CHHHHHHHHhChHHH
Confidence 6555543 3344444 25567899999999999975 5568888888887753 466666666665543
Q ss_pred hcccceeeeCC-CCCccchhHHHHHHHHHHhhcCH
Q 011731 110 STLSDFQYIDS-SGRDQGSNVRKKSQSLVALVNDK 143 (478)
Q Consensus 110 r~L~~FqyiD~-~GkD~G~nVReKAk~Il~LL~D~ 143 (478)
-.+- |...-. .-..|...||.+|..++.+|.|-
T Consensus 338 ~p~i-~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 338 LPII-FPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHH-HHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2211 111111 12468899999999999999764
No 39
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=68.84 E-value=7 Score=49.00 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=5.9
Q ss_pred CceeeeecCC
Q 011731 431 NALAIMPSVP 440 (478)
Q Consensus 431 n~l~~vp~~~ 440 (478)
.-+.+|-.+.
T Consensus 1807 l~~GVmaGYg 1816 (2039)
T PRK15319 1807 VTVGVMASYI 1816 (2039)
T ss_pred EEEEEEEEec
Confidence 4467776554
No 40
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.94 E-value=37 Score=36.09 Aligned_cols=142 Identities=18% Similarity=0.202 Sum_probs=87.5
Q ss_pred hhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh----hHHHH--HHHHHHHhccCCCCchhhhhHHHHHHHH
Q 011731 17 NKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH----EYQMI--IGVIWKRINDTGKNWRHVYKALTVLEYL 90 (478)
Q Consensus 17 kn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~----~y~~I--M~vLwKRL~d~gKnWR~VyKALtLLEYL 90 (478)
++.|+..--.+..++-.+++++-....+.|-.|+-+-.|.. .|..| ..+|...|...+..-|-.-|++.||.||
T Consensus 159 Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 159 QEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLL 238 (342)
T ss_pred HHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 33566666667777777888888998999999998877753 23333 4577888888888999999999999999
Q ss_pred HHhCCHHHHHHHHhhhhh------hhccc------------ceeeeCCCCC---ccchhHHHHHHHHHHhhcCHHHHHHH
Q 011731 91 VAHGSERVIDDIREHSYQ------ISTLS------------DFQYIDSSGR---DQGSNVRKKSQSLVALVNDKERIIEV 149 (478)
Q Consensus 91 LkNGSErvVddlR~hi~~------Ir~L~------------~FqyiD~~Gk---D~G~nVReKAk~Il~LL~D~e~LreE 149 (478)
|.---...- .++.+... +..|. .+-+.-..++ +--.+.|+.-++.+.++.+-+.++++
T Consensus 239 l~~~~s~~d-~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e 317 (342)
T KOG2160|consen 239 LQEDKSDED-IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEE 317 (342)
T ss_pred HHhhhhhhh-HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 975332211 11111110 11111 0000001122 23346677777777777766667777
Q ss_pred HHHHHHHhhh
Q 011731 150 RQKAAANRDK 159 (478)
Q Consensus 150 R~KAkknR~K 159 (478)
|+-+......
T Consensus 318 ~~l~~~l~~~ 327 (342)
T KOG2160|consen 318 RQLVNSLWEI 327 (342)
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 41
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=66.55 E-value=8.7 Score=48.22 Aligned_cols=9 Identities=11% Similarity=0.036 Sum_probs=4.3
Q ss_pred CCChHHhhh
Q 011731 289 PPSYEEAVS 297 (478)
Q Consensus 289 Ppsyeea~~ 297 (478)
.-.||=-|.
T Consensus 1645 AGAYeY~L~ 1653 (2039)
T PRK15319 1645 AGLYTYRLY 1653 (2039)
T ss_pred cccEEEEEE
Confidence 344555554
No 42
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=65.78 E-value=4.7 Score=48.68 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=5.6
Q ss_pred CCCCCCCCCCC
Q 011731 350 GSSSPPAAPGA 360 (478)
Q Consensus 350 ~~~~~p~~~~~ 360 (478)
.|..|||+||-
T Consensus 22 s~pppPppPg~ 32 (2365)
T COG5178 22 SQPPPPPPPGV 32 (2365)
T ss_pred CCCCCccCCCc
Confidence 35445555554
No 43
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=64.10 E-value=30 Score=38.89 Aligned_cols=6 Identities=17% Similarity=0.684 Sum_probs=2.7
Q ss_pred Cchhhh
Q 011731 76 NWRHVY 81 (478)
Q Consensus 76 nWR~Vy 81 (478)
+|..++
T Consensus 55 ~~~~L~ 60 (574)
T PF07462_consen 55 KWNALG 60 (574)
T ss_pred HHHHHH
Confidence 454443
No 44
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.39 E-value=17 Score=41.68 Aligned_cols=67 Identities=31% Similarity=0.537 Sum_probs=32.4
Q ss_pred CCCCCCChHHhhhccCCCCCCCCCCCCccCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q 011731 285 NIGAPPSYEEAVSESRSPVHSERDGESSASAVPPPGPPGVLPP-PARLGASSPPAAPGAASPPPAPGS 351 (478)
Q Consensus 285 ~~~aPpsyeea~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~p-~~~~~~~~~~~~p~~~~~~~~~~~ 351 (478)
..+-.|.-.|.+.+++..-+.+-.-.++|++-|++.-|.++.+ -+..-+-+||-+|+++.||||-+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~a~~~p~~a~~~~p~~~~~~~d~a~~~~~~p~a~~~pp~~~ 120 (922)
T KOG2677|consen 53 HTGDAPTASEPVQELSPTPEASSSTGTSAPARPPPARPEAPKKDETAVDAAAPPRPPPAARPPPPRPA 120 (922)
T ss_pred CcCCCCCccCcccccCCCccccccccccCCCCCCCCCCCCCCccccccccccCCCCCcccCCCCCCCC
Confidence 3344444456667777666666555565555553333332222 122233445555555555443333
No 45
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=62.56 E-value=18 Score=42.82 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=52.2
Q ss_pred HHHHHH--HHHhhhccCCchHHHHHHHHhcCCC-CCCCHHHHHHHHHHhcChhhHHHHHH-----------HHHHHhccC
Q 011731 8 TFRDIK--RGVNKKVLKVPGIEQKVLDATSNEP-WGPHGTLLADIAQATRNYHEYQMIIG-----------VIWKRINDT 73 (478)
Q Consensus 8 tvrdlk--r~Vkn~Vln~S~~E~kVrEATSNDp-WGPtgtlL~EIAqaTyn~~~y~~IM~-----------vLwKRL~d~ 73 (478)
+.|.|+ +.+.+++.++++.|+....- -.. =+|+-++..++.+.-|..++-.+|++ ++.|||..+
T Consensus 570 ~~~~Ik~Le~i~d~~~~~~e~Eka~~~L--p~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~K 647 (1163)
T COG5602 570 TQRTIKALEQIIDKIKDMEESEKANKTL--PGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKMK 647 (1163)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHhcC--CCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHHh
Confidence 334444 55666677777776655322 111 26788899999999999998888887 667899888
Q ss_pred CCCchhhhhHH
Q 011731 74 GKNWRHVYKAL 84 (478)
Q Consensus 74 gKnWR~VyKAL 84 (478)
.++||.+...+
T Consensus 648 d~EWR~~kRew 658 (1163)
T COG5602 648 DEEWRSCKREW 658 (1163)
T ss_pred hHHHHHHHHHH
Confidence 88888665433
No 46
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=61.93 E-value=29 Score=41.56 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCCCC
Q 011731 171 PGSYSSSGGNGDRYD 185 (478)
Q Consensus 171 ~gs~ss~ggYg~~~d 185 (478)
+|+..+.||||+.|.
T Consensus 1185 GgssysgGGYGggys 1199 (1282)
T KOG0921|consen 1185 GGSSYSGGGYGGGYS 1199 (1282)
T ss_pred CCCCCCCCCcCCCCC
Confidence 345557788888873
No 47
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=56.81 E-value=1.1e+02 Score=34.16 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=24.5
Q ss_pred HHHHHhcC---------CCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhc
Q 011731 29 KVLDATSN---------EPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIN 71 (478)
Q Consensus 29 kVrEATSN---------DpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~ 71 (478)
.|.++++. ++.||- +.+-|.+.+-. ++...||+.|...+.
T Consensus 317 Fiv~~f~~~~~~~~ls~~~YGCR--VIQr~lE~c~~-~~~~~i~~ei~~~~~ 365 (503)
T KOG1488|consen 317 FIVDFFSGDDNLLELSTHKYGCR--VIQRILEHCSE-DQKQPLMEEIIRNCD 365 (503)
T ss_pred HHHHHhcCCCceeEeeccCcccH--HHHHHhhcCCh-HhhhHHHHHHHHHHH
Confidence 46677765 556763 44455554433 455668888887765
No 48
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=54.88 E-value=14 Score=36.99 Aligned_cols=53 Identities=23% Similarity=0.496 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCCCCH----HHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhH
Q 011731 27 EQKVLDATSNEPWGPHG----TLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKA 83 (478)
Q Consensus 27 E~kVrEATSNDpWGPtg----tlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKA 83 (478)
++-+..|.+|..|-+=+ .+|--+-.....-.-...=+..|||+| +.||.|||.
T Consensus 76 ~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i----~~Wr~vF~~ 132 (221)
T KOG0037|consen 76 AKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI----NQWRNVFRT 132 (221)
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH----HHHHHHHHh
Confidence 34467788888885522 122111111111111223345789988 479999983
No 49
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=53.68 E-value=22 Score=39.99 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=3.7
Q ss_pred CCCCCCCCCC
Q 011731 322 PGVLPPPARL 331 (478)
Q Consensus 322 p~~~~p~~~~ 331 (478)
|+.-|-++.+
T Consensus 236 P~~~P~~~~L 245 (817)
T KOG1925|consen 236 PKELPTRDFL 245 (817)
T ss_pred hhccCCchhh
Confidence 3333333333
No 50
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=53.16 E-value=1.7e+02 Score=30.64 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhhhhhcccc-e----eee-CCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHH-HHHHhhhhhc
Q 011731 96 ERVIDDIREHSYQISTLSD-F----QYI-DSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQK-AAANRDKFRN 162 (478)
Q Consensus 96 ErvVddlR~hi~~Ir~L~~-F----qyi-D~~GkD~G~nVReKAk~Il~LL~D~e~LreER~K-AkknR~Ky~g 162 (478)
..+-.-+..|...|+.|.. + .++ ..........|..+...|-.+|++-+.|+.+|.+ ...+|.|.+.
T Consensus 151 ~~v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~~ 224 (353)
T cd09236 151 ELVRRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLESRRRRKVERARTKARA 224 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667888887777742 1 122 1112133457889999999999999999999998 4555665544
No 51
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=52.44 E-value=32 Score=29.76 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=42.7
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh--hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHH
Q 011731 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY--HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVA 92 (478)
Q Consensus 23 ~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~--~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLk 92 (478)
++..+.+||.+. -..|.+|++..... ..|.+|++.|+|.+.+...+ |-++-.+|+.|||
T Consensus 36 ~~D~d~rVRy~A--------cEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~---Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 36 FDDQDSRVRYYA--------CEALYNISKVARGEILPYFNEIFDALCKLSADPDEN---VRSAAELLDRLLK 96 (97)
T ss_pred cCCCcHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhc
Confidence 455566666443 24566677666543 46899999999999997655 7778889999987
No 52
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.24 E-value=89 Score=33.87 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcc-----C------CCCchhhhhHHHHHHHHHHhCC
Q 011731 59 YQMIIGVIWKRIND-----T------GKNWRHVYKALTVLEYLVAHGS 95 (478)
Q Consensus 59 y~~IM~vLwKRL~d-----~------gKnWR~VyKALtLLEYLLkNGS 95 (478)
+.++.+.+.+||.. + -..|-+.+=.-.|+|||++||.
T Consensus 84 e~~~~~~iksRid~m~e~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy 131 (389)
T KOG0396|consen 84 EEEQLKRIKSRIDFMHEEISSDTPANSRKWPRNKLDRFVVDHMLRNGY 131 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCchHHHHhHHHHHHHHHHHHHHHcCc
Confidence 35666777777642 1 2479999999999999999998
No 53
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.69 E-value=71 Score=39.33 Aligned_cols=121 Identities=11% Similarity=-0.009 Sum_probs=75.1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhcCh--hhHHHHHHHHHHHhccC-------CCCchhhhhHHHHHHHHHHhCCHHHH
Q 011731 29 KVLDATSNEPWGPHGTLLADIAQATRNY--HEYQMIIGVIWKRINDT-------GKNWRHVYKALTVLEYLVAHGSERVI 99 (478)
Q Consensus 29 kVrEATSNDpWGPtgtlL~EIAqaTyn~--~~y~~IM~vLwKRL~d~-------gKnWR~VyKALtLLEYLLkNGSErvV 99 (478)
..+.|-+.+.|++-..+-.+|-...|.- ++-..|-.+|..-|... =+.|.++|..|-++.+=.-+-=..+.
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q 488 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ 488 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence 3456667778888887777887777665 23333334444555542 24566666655555554444444555
Q ss_pred HHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHH
Q 011731 100 DDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKA 153 (478)
Q Consensus 100 ddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KA 153 (478)
..+|.++...-.|.++++.|. .-..|-.+...|.+.|-|+-....-+.+.
T Consensus 489 ~~ls~~vr~~I~~~k~~~~d~----~~k~i~~~i~~i~~~lpD~~s~~~~~~~f 538 (1266)
T KOG1525|consen 489 SRLSEEVRDYITLSKTPNTDD----SMKKIFSKIVKISENLPDPSSRSYDSMKF 538 (1266)
T ss_pred HHHHHHHHHHhccccCCCccH----hHHHHHHHHHHHHHhcCCchhhhhHHHHH
Confidence 556666555557777777753 55678888888888888886655555444
No 54
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=47.03 E-value=94 Score=37.57 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=7.6
Q ss_pred CCCCCHHHHHHHHHHhc
Q 011731 38 PWGPHGTLLADIAQATR 54 (478)
Q Consensus 38 pWGPtgtlL~EIAqaTy 54 (478)
-|+.+-.++..|-++.|
T Consensus 950 t~~a~~ql~d~L~q~~f 966 (1282)
T KOG0921|consen 950 TDGARRQLIDVLRQCSF 966 (1282)
T ss_pred hhhhHHHHHHHHHhccC
Confidence 34444444444444433
No 55
>PRK09752 adhesin; Provisional
Probab=45.47 E-value=24 Score=42.92 Aligned_cols=11 Identities=18% Similarity=0.127 Sum_probs=7.0
Q ss_pred CCceeeeecCC
Q 011731 430 SNALAIMPSVP 440 (478)
Q Consensus 430 sn~l~~vp~~~ 440 (478)
..-|.+|-.+.
T Consensus 1029 ~~~lGVMaGYG 1039 (1250)
T PRK09752 1029 EWMLGIVGGYS 1039 (1250)
T ss_pred cEEEEEEEEEe
Confidence 34677887654
No 56
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=45.11 E-value=69 Score=36.98 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHhcChhhHHHHHHHHHHHhcc--CCCCchhhhhHH-HHHHHHHHhCCH--HHHHHHHhhhhhhhcccce
Q 011731 41 PHGTLLADIAQATRNYHEYQMIIGVIWKRIND--TGKNWRHVYKAL-TVLEYLVAHGSE--RVIDDIREHSYQISTLSDF 115 (478)
Q Consensus 41 PtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d--~gKnWR~VyKAL-tLLEYLLkNGSE--rvVddlR~hi~~Ir~L~~F 115 (478)
=+.++++++-..-+....-..+..++-+-|.- ....--+|+|-| +.++|++.+-.| ++|+-+-.|+- |
T Consensus 26 Ghrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~l--R----- 98 (885)
T COG5218 26 GHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLL--R----- 98 (885)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHH--h-----
Confidence 35667777776666554445566666666643 234555666655 578999999776 67777666542 2
Q ss_pred eeeCCCCCccchhHHHHHHHHHHhhcC
Q 011731 116 QYIDSSGRDQGSNVRKKSQSLVALVND 142 (478)
Q Consensus 116 qyiD~~GkD~G~nVReKAk~Il~LL~D 142 (478)
++|. ...+||+++-+|+.+|.|
T Consensus 99 -g~es----kdk~VR~r~lqila~~~d 120 (885)
T COG5218 99 -GTES----KDKKVRKRSLQILALLSD 120 (885)
T ss_pred -cccC----cchhHHHHHHHHHHHHHH
Confidence 1222 235899999999999987
No 57
>PF15449 Retinal: Retinal protein
Probab=44.48 E-value=1.3e+02 Score=36.83 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHhhcCHHHHHHHH
Q 011731 126 GSNVRKKSQSLVALVNDKERIIEVR 150 (478)
Q Consensus 126 G~nVReKAk~Il~LL~D~e~LreER 150 (478)
|---|.-+|+||+-..=.|-|+..+
T Consensus 734 gcptR~SVKKLIETFSPte~l~~~~ 758 (1287)
T PF15449_consen 734 GCPTRTSVKKLIETFSPTESLRTPG 758 (1287)
T ss_pred CCCchHhHHHHHHhcCccccccccc
Confidence 4456888999999888877775544
No 58
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=44.36 E-value=72 Score=34.70 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=4.5
Q ss_pred cCCCCCCCChH
Q 011731 283 EQNIGAPPSYE 293 (478)
Q Consensus 283 ~q~~~aPpsye 293 (478)
..+.++.|.-+
T Consensus 145 ~i~~gaApa~~ 155 (457)
T KOG0559|consen 145 KISPGAAPAKG 155 (457)
T ss_pred EecCCCCCccc
Confidence 33344444433
No 59
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=44.09 E-value=3.5e+02 Score=31.95 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHhCCH--HHHHHHHhhhhhhhccc
Q 011731 80 VYKALTVLEYLVAHGSE--RVIDDIREHSYQISTLS 113 (478)
Q Consensus 80 VyKALtLLEYLLkNGSE--rvVddlR~hi~~Ir~L~ 113 (478)
+.+.|.+|+.|+.+|-+ +|+.+|.+|+..|-.|+
T Consensus 263 ~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vk 298 (824)
T PRK07764 263 GAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQ 298 (824)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 44677889999999854 67777777665544343
No 60
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=42.11 E-value=33 Score=37.79 Aligned_cols=6 Identities=33% Similarity=0.257 Sum_probs=3.5
Q ss_pred cccccc
Q 011731 276 GLERKF 281 (478)
Q Consensus 276 g~e~~~ 281 (478)
|+-|+.
T Consensus 210 Gl~W~~ 215 (480)
T KOG2675|consen 210 GLVWNK 215 (480)
T ss_pred cceecC
Confidence 566654
No 61
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.94 E-value=77 Score=26.72 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCC
Q 011731 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS 95 (478)
Q Consensus 57 ~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGS 95 (478)
..+..++.+|.....+..+.+|..+ ..||.+|++.+.
T Consensus 32 ~~~~~vv~~~l~~~le~~~~~r~~~--~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 32 SQHHEVVKVILECALEEKKSYREYY--SKLLSHLCKRKL 68 (113)
T ss_dssp GGHHHHHHHHHHHHHTSSHHHHHHH--HHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHhhccHHHHHHH--HHHHHHHHhcCC
Confidence 3455566665555555555555544 457777777665
No 62
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=40.79 E-value=33 Score=37.78 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhccCC---CCchhhhh-----HHHHHHHHHHhCCHHHHHHHHhhhhhhhcccceeeeCC
Q 011731 60 QMIIGVIWKRINDTG---KNWRHVYK-----ALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120 (478)
Q Consensus 60 ~~IM~vLwKRL~d~g---KnWR~VyK-----ALtLLEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~ 120 (478)
.++.+++.-+|.... +.||.+|+ ++.||.||+.+=.+.-.. ++. .+-++|+.|+..++
T Consensus 167 ~E~~~~li~CLt~d~~c~~~Wr~lY~knl~~S~llL~~l~~~W~~~s~K-L~k--~l~~Tl~sfr~~Ne 232 (469)
T PF10151_consen 167 KELISILIWCLTQDPDCFKVWRQLYKKNLKQSVLLLKHLDDEWKESSKK-LSK--SLKETLKSFRLKNE 232 (469)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhHH-HHH--HHHHHHHHHHHhHH
Confidence 567777777776542 68998887 689999998874433222 222 33456777776653
No 63
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=40.59 E-value=1.9e+02 Score=28.23 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=37.1
Q ss_pred HHHHHHHhhhccCCchHHHH---HHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHH
Q 011731 10 RDIKRGVNKKVLKVPGIEQK---VLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86 (478)
Q Consensus 10 rdlkr~Vkn~Vln~S~~E~k---VrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtL 86 (478)
|-||+-+.+=..+...++.. |.++..|. .+...|...-....+...|+..+.+. .-+.++|..++++|..
T Consensus 18 r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~------~l~~~l~~~L~~~~Di~~~l~~~~~~-~~~~~el~~l~~~l~~ 90 (308)
T smart00533 18 RLLRRWLLQPLLDLKEINERLDAVEELVENP------ELRQKLRQLLKRIPDLERLLSRIERG-RASPRDLLRLYDSLEG 90 (308)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHhCh------HHHHHHHHHHccCCcHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44554444434444444443 55666532 33444444344445555555554432 1245688888888874
Q ss_pred HH
Q 011731 87 LE 88 (478)
Q Consensus 87 LE 88 (478)
+.
T Consensus 91 ~~ 92 (308)
T smart00533 91 LK 92 (308)
T ss_pred HH
Confidence 43
No 64
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.33 E-value=83 Score=35.75 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=14.7
Q ss_pred cCCCcccchhccccccCcCCC
Q 011731 410 LATSNSAEIDLLGSLSDSFSS 430 (478)
Q Consensus 410 ~~~~~~~emdl~gslsd~~ss 430 (478)
|++.-.++||| |||.+-|+.
T Consensus 453 ~~~~~~~~~~~-~~~~~~~~~ 472 (620)
T PRK14954 453 NVASGKPGVDL-GSWQGKFMN 472 (620)
T ss_pred ccccCCccccc-Hhhhhhccc
Confidence 33446678987 999988875
No 65
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=40.28 E-value=3e+02 Score=28.32 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=46.6
Q ss_pred hCCHHHHHHHHhhhhhhhcccc-e----eeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHH-HHHhhhhhc
Q 011731 93 HGSERVIDDIREHSYQISTLSD-F----QYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKA-AANRDKFRN 162 (478)
Q Consensus 93 NGSErvVddlR~hi~~Ir~L~~-F----qyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KA-kknR~Ky~g 162 (478)
++...+..-+..|...|+.|.. . .++-.........|..+++.|-.+|++-+.|+.+|.+. ..+|.|...
T Consensus 147 ~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ 222 (342)
T cd08915 147 NSDNEVLQCYESIDPNLVLLCGGYKELKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIKSRN 222 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHhCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456677888888888777743 0 11111111233478889999999999999999999974 455665443
No 66
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=39.72 E-value=2.3e+02 Score=23.79 Aligned_cols=103 Identities=9% Similarity=0.080 Sum_probs=54.5
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHH
Q 011731 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (478)
Q Consensus 23 ~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddl 102 (478)
+......++.+...+++ .......++..-+...+|.....++.+.+.....+|...|. |-.+ |+...--++.+.++
T Consensus 33 ~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-la~~-~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 33 YDEALKLFQLLAAYDPY--NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH-AAEC-LLALGEPESALKAL 108 (135)
T ss_pred HHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH-HHHH-HHHcCCHHHHHHHH
Confidence 44555556666666555 34556666666666667777777777666555555554433 2221 22223334555555
Q ss_pred HhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhh
Q 011731 103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALV 140 (478)
Q Consensus 103 R~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL 140 (478)
+.-+.+.. .......+++++..++++|
T Consensus 109 ~~al~~~p-----------~~~~~~~~~~~~~~~~~~~ 135 (135)
T TIGR02552 109 DLAIEICG-----------ENPEYSELKERAEAMLESL 135 (135)
T ss_pred HHHHHhcc-----------ccchHHHHHHHHHHHHhcC
Confidence 44333211 1122335667777777664
No 67
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=38.81 E-value=86 Score=34.53 Aligned_cols=19 Identities=42% Similarity=0.569 Sum_probs=7.9
Q ss_pred cCCCCCCCCCCCCCCCCCC
Q 011731 313 ASAVPPPGPPGVLPPPARL 331 (478)
Q Consensus 313 ~~~~p~~~~p~~~~p~~~~ 331 (478)
|+++|..--|+.-||+..+
T Consensus 323 a~~~p~~~q~p~~Pp~~~l 341 (487)
T KOG4672|consen 323 AAASPTNFQPPYGPPPGML 341 (487)
T ss_pred cccccCcCCCCCCCCCccc
Confidence 3444443334444444444
No 68
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=38.76 E-value=32 Score=29.99 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHhcChhhHHHHHHHHHHHhcc-------------CCCCchhhhhHH
Q 011731 40 GPHGTLLADIAQATRNYHEYQMIIGVIWKRIND-------------TGKNWRHVYKAL 84 (478)
Q Consensus 40 GPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d-------------~gKnWR~VyKAL 84 (478)
.++..+|..|-..+ .++....+.||+++.. ..+.||.+|..|
T Consensus 18 ~~~~~QL~~iE~~n---p~l~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~ 72 (109)
T PF06881_consen 18 KCSPEQLRRIEDNN---PHLIEDTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKL 72 (109)
T ss_pred cCCHHHHHHHHHhC---CCcchhhHHHHHHHHHhHCcChhhcccccccchHHHHHHHH
Confidence 44677777777765 4455667888998753 236898888754
No 69
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.58 E-value=36 Score=33.05 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=44.7
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhhhhhhhc
Q 011731 32 DATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQIST 111 (478)
Q Consensus 32 EATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~hi~~Ir~ 111 (478)
.+-.++.||-+ .|+. +.++++|-......|-+|+.|+|=-- .+|+ .
T Consensus 13 ~~YHD~eWG~p----------~~dd---~~LFE~L~Le~fQAGLSW~tIL~Kr~---------------~fr~------a 58 (179)
T TIGR00624 13 RAYHDNEWGVP----------LRDS---VALFERMSLEGFQAGLSWITVLRKRE---------------NYRR------A 58 (179)
T ss_pred HHhhhccCCCc----------CcCC---HHHHHHHHHHHHhCcCCHHHHHHhHH---------------HHHH------H
Confidence 34456667765 2332 45566666666677888988887211 1111 1
Q ss_pred ccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHH
Q 011731 112 LSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQK 152 (478)
Q Consensus 112 L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~K 152 (478)
+ .|.|.....+---++|-.||.|+..||.+|+-
T Consensus 59 F--------~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI 91 (179)
T TIGR00624 59 F--------SGFDIVKVARMTDADVERLLQDDGIIRNRGKI 91 (179)
T ss_pred H--------cCCCHHHHhCCCHHHHHHHhcCccchhhHHHH
Confidence 1 23333333333346788888888888876554
No 70
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=38.36 E-value=40 Score=22.93 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCHHHHHHHHh
Q 011731 85 TVLEYLVAHGSERVIDDIRE 104 (478)
Q Consensus 85 tLLEYLLkNGSErvVddlR~ 104 (478)
.|++||+++|-.+...-|+.
T Consensus 6 lI~~YL~~~Gy~~tA~~f~~ 25 (27)
T PF08513_consen 6 LIYDYLVENGYKETAKAFAK 25 (27)
T ss_dssp HHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHh
Confidence 58899999999887766653
No 71
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=38.20 E-value=37 Score=31.86 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
Q 011731 131 KKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (478)
Q Consensus 131 eKAk~Il~LL~D~e~LreER~KAkknR~Ky 160 (478)
+-++.|..||+|++.+++.++++++...++
T Consensus 332 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 332 ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 788899999999999888888777776655
No 72
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=37.92 E-value=1.5e+02 Score=33.02 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=15.2
Q ss_pred HHHhcChhhHHHHHHHHHHH
Q 011731 50 AQATRNYHEYQMIIGVIWKR 69 (478)
Q Consensus 50 AqaTyn~~~y~~IM~vLwKR 69 (478)
.....+|-+|.+|+++|..-
T Consensus 59 ~~~~i~Y~~c~~i~~iL~~t 78 (507)
T PF05600_consen 59 SGSYINYFHCKRIVEILKQT 78 (507)
T ss_pred ccCCCCHHHHHHHHHHHhCC
Confidence 33456888999999988765
No 73
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=37.91 E-value=42 Score=32.69 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHHHH-hhhh
Q 011731 128 NVRKKSQSLVALVNDKERIIEVRQKAAAN-RDKF 160 (478)
Q Consensus 128 nVReKAk~Il~LL~D~e~LreER~KAkkn-R~Ky 160 (478)
++.+-++.|.+||.|++.+++.++++++. +++|
T Consensus 322 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~f 355 (371)
T cd04962 322 DVEAMAEYALSLLEDDELWQEFSRAARNRAAERF 355 (371)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC
Confidence 57888999999999999999988888876 6665
No 74
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=37.71 E-value=2.6e+02 Score=27.58 Aligned_cols=101 Identities=18% Similarity=0.284 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHhcc-----------CCCCc---------hhhhhHHHHHHHHHHhCC---HHHHHHHHhhhhhhhccc
Q 011731 57 HEYQMIIGVIWKRIND-----------TGKNW---------RHVYKALTVLEYLVAHGS---ERVIDDIREHSYQISTLS 113 (478)
Q Consensus 57 ~~y~~IM~vLwKRL~d-----------~gKnW---------R~VyKALtLLEYLLkNGS---ErvVddlR~hi~~Ir~L~ 113 (478)
..+..++.-+..+|.. .|..| ..+++.|.-++=.|..+. ..+..-+..|...|+.|.
T Consensus 39 ~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~ 118 (296)
T PF13949_consen 39 QEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLS 118 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHc
Confidence 3445566666665543 35677 456666665555555443 356677777777776664
Q ss_pred c--------eeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHH-HHhhhh
Q 011731 114 D--------FQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAA-ANRDKF 160 (478)
Q Consensus 114 ~--------FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAk-knR~Ky 160 (478)
. .--.+..+ ...+.+..++|-.||..-+.|+.+|.... .+|.++
T Consensus 119 ~~~~~L~~~lp~~~~~~---~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~ 171 (296)
T PF13949_consen 119 GPIEELEASLPSSSPSD---SPQVSEVIRQLRELLNKLEELKKEREELLEQLKEKL 171 (296)
T ss_dssp SSHHHHHHHS--B---S---SGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CChhhHHhhCCCCCccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 11111111 13336677777788888888888888843 345544
No 75
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=37.44 E-value=38 Score=22.25 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCHHHHHHHHhh
Q 011731 85 TVLEYLVAHGSERVIDDIREH 105 (478)
Q Consensus 85 tLLEYLLkNGSErvVddlR~h 105 (478)
.|++||+.+|-......++.-
T Consensus 9 lI~~yL~~~g~~~ta~~l~~e 29 (34)
T smart00667 9 LILEYLLRNGYEETAETLQKE 29 (34)
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 599999999998877766543
No 76
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=36.65 E-value=1.3e+02 Score=25.47 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=35.2
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCC
Q 011731 45 LLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS 95 (478)
Q Consensus 45 lL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGS 95 (478)
+-++|-+......++.+|.+.|..||.+. .|+--.|.+.- +.+-..|.
T Consensus 2 l~~~i~~~L~~sGe~~~L~~~L~~rL~e~--GW~d~vr~~~r-e~i~~~g~ 49 (86)
T PF10163_consen 2 LKAQIQQRLVESGEYERLKELLRQRLIEC--GWRDEVRQLCR-EIIRERGI 49 (86)
T ss_dssp HHHHHHHHHHHCTHHHHHHHHHHHHHHHT--THHHHHHHHHH-HHHHHH-T
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC--ChHHHHHHHHH-HHHHhhCC
Confidence 34567777777789999999999999887 59988876643 55555443
No 77
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.47 E-value=5.7e+02 Score=30.04 Aligned_cols=79 Identities=9% Similarity=0.084 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
Q 011731 81 YKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (478)
Q Consensus 81 yKALtLLEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky 160 (478)
.+.|.+++-|+.+|-+ +..++++.+..|+.|.-++...+ ..+....-+++.+++.+.| +.+.|+.--+...+-++.+
T Consensus 267 ~~~l~l~~~l~~~G~d-~~~~L~dLl~~l~~l~l~q~~~~-~~~~~~~~~~~~~~~a~~~-s~~~l~~~~q~~~~~~~el 343 (700)
T PRK12323 267 AALLAIADEMAGRSLS-FAGALQDLASLLQKIALAQVVPA-AVQDDWPEADDIRRLAGRF-DAQEVQLFYQIANLGRSEL 343 (700)
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHhhCch-hcccccchHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHh
Confidence 3556678888888887 66677777777666665554432 1111111244444444444 3455655555555566555
Q ss_pred hc
Q 011731 161 RN 162 (478)
Q Consensus 161 ~g 162 (478)
..
T Consensus 344 ~~ 345 (700)
T PRK12323 344 AL 345 (700)
T ss_pred cc
Confidence 43
No 78
>PRK09752 adhesin; Provisional
Probab=36.29 E-value=36 Score=41.51 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=3.8
Q ss_pred ChHHhhhc
Q 011731 291 SYEEAVSE 298 (478)
Q Consensus 291 syeea~~~ 298 (478)
.||=-|.+
T Consensus 899 AYeY~L~k 906 (1250)
T PRK09752 899 AYDYTLVE 906 (1250)
T ss_pred eEEEEEEe
Confidence 45544443
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=35.86 E-value=3.5e+02 Score=29.81 Aligned_cols=118 Identities=11% Similarity=0.096 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHhcChhhHHHHHHHHHHHhcc--CCCCchhhhhHHHHH-------HHHHHhCCH-HHHHHHHhhhhh---
Q 011731 42 HGTLLADIAQATRNYHEYQMIIGVIWKRIND--TGKNWRHVYKALTVL-------EYLVAHGSE-RVIDDIREHSYQ--- 108 (478)
Q Consensus 42 tgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d--~gKnWR~VyKALtLL-------EYLLkNGSE-rvVddlR~hi~~--- 108 (478)
.+..|-+|+++-|..-+...-+..|+.+|.- ..|.+-..||.|.-| +-++.++.. .|+..-..-+..
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 3677899999999999999999999999863 445555555555544 444444432 233322111111
Q ss_pred h--hcccceeeeCC---CCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
Q 011731 109 I--STLSDFQYIDS---SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (478)
Q Consensus 109 I--r~L~~FqyiD~---~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky 160 (478)
+ -.+.-|..+.. .....|..|++ |++|+++.-|+-.+--.|..|.-.-+-|
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqq-C~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQ-CKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHH-HHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 1 11223433221 12345666664 7788888777666666666665444433
No 80
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=34.60 E-value=2.6e+02 Score=33.31 Aligned_cols=46 Identities=17% Similarity=0.379 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCc-hhhhhHHHHHHHH
Q 011731 42 HGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNW-RHVYKALTVLEYL 90 (478)
Q Consensus 42 tgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnW-R~VyKALtLLEYL 90 (478)
+-.-++.|++.-.- -.+.++..|..|+-.-.+| |+|-|+|.=|.-|
T Consensus 186 p~~r~q~~~r~~~k---qa~~~~~~we~l~~~~~~w~k~v~~~le~l~el 232 (966)
T KOG4286|consen 186 PEERAQNVTRLLRK---QAEEVNTEWEKLNLHSADWQRKIDETLERLQEL 232 (966)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence 34445556655432 2367788888888766677 6788888766554
No 81
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=34.37 E-value=2.4e+02 Score=26.26 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=36.7
Q ss_pred HHHHHHHhcChhh-HHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHH
Q 011731 46 LADIAQATRNYHE-YQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (478)
Q Consensus 46 L~EIAqaTyn~~~-y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVd 100 (478)
+--+++++..+.. ....+..|.++|.+. ++..=.-||.+|-||+.+|-.++-.
T Consensus 9 i~~l~DL~~r~~~~ve~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik~k~ 62 (178)
T PF12717_consen 9 IIALGDLCIRYPNLVEPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIKVKG 62 (178)
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCceeehh
Confidence 3445555544433 344677889999887 4555567999999999998766443
No 82
>PF08467 Luteo_P1-P2: Luteovirus RNA polymerase P1-P2/replicase; InterPro: IPR013674 This domain is found in RNA-dependent RNA polymerase P1-P2 fusion/replicase proteins in plant Luteoviruses. ; GO: 0003968 RNA-directed RNA polymerase activity
Probab=34.02 E-value=58 Score=34.56 Aligned_cols=41 Identities=5% Similarity=0.059 Sum_probs=34.2
Q ss_pred CccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhcc
Q 011731 123 RDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (478)
Q Consensus 123 kD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky~g~ 163 (478)
.++-...+-|++.+++||++.+.|...+.++++.-.+-+|.
T Consensus 138 ~~~~~~~~~~~ek~~~Ll~~~~~f~~~e~ri~~~Y~ee~G~ 178 (361)
T PF08467_consen 138 EPKSLENPARVEKFINLLEKKHVFSATEVRIKKVYEEEIGR 178 (361)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47778889999999999999999998888887766655554
No 83
>KOG2607 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=34.01 E-value=1.8e+02 Score=32.32 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhcc
Q 011731 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIND 72 (478)
Q Consensus 5 f~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d 72 (478)
..+-|+.||+++.|++..+++.+..+ .-++..--||-+|.+|+++|.|-=.+
T Consensus 28 wqk~v~~Ir~KI~~a~~dmPe~~~~~----------------~lL~~~~InY~hvk~iiEIL~~Tekd 79 (505)
T KOG2607|consen 28 WQKRVAVIRVKILKAFSDMPEIDPFF----------------QLLDPEVINYLHVKKIIEILLKTEKD 79 (505)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHH----------------HHhchhhcchHhHHHHHHHHHhcChh
Confidence 34556777777777777766655544 23444456788899999999887655
No 84
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=33.94 E-value=56 Score=30.60 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHH-hhhh
Q 011731 129 VRKKSQSLVALVNDKERIIEVRQKAAAN-RDKF 160 (478)
Q Consensus 129 VReKAk~Il~LL~D~e~LreER~KAkkn-R~Ky 160 (478)
+.+.++.|..|++|++..++..+++++. +++|
T Consensus 332 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (375)
T cd03821 332 VDALAAALRRALELPQRLKAMGENGRALVEERF 364 (375)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 4778899999999998888888888777 6666
No 85
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=33.47 E-value=35 Score=37.65 Aligned_cols=6 Identities=17% Similarity=0.656 Sum_probs=2.4
Q ss_pred eeeeec
Q 011731 433 LAIMPS 438 (478)
Q Consensus 433 l~~vp~ 438 (478)
.-|+|+
T Consensus 91 ~f~~Pv 96 (465)
T PF01690_consen 91 MFVFPV 96 (465)
T ss_pred EEEEec
Confidence 334444
No 86
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=33.25 E-value=69 Score=29.57 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
Q 011731 128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (478)
Q Consensus 128 nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky 160 (478)
.+.+-++.|.+||+|++++++.++++++..++|
T Consensus 305 ~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 305 DVEALAEALLRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999998887777766
No 87
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=33.15 E-value=2.5e+02 Score=33.42 Aligned_cols=148 Identities=22% Similarity=0.285 Sum_probs=77.1
Q ss_pred HHHHHHHHhhhccCCchHHHH---HHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHH
Q 011731 9 FRDIKRGVNKKVLKVPGIEQK---VLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALT 85 (478)
Q Consensus 9 vrdlkr~Vkn~Vln~S~~E~k---VrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALt 85 (478)
.|.||+-|.+-++++.+++.. |.|.|+.-.- +.++..|-++-+...+..+=+..|.-+-...+++.-+|+|++.
T Consensus 496 ~RmLr~WvtkPLvd~~~I~eRLDAVeeitshssn---S~vf~si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy 572 (1070)
T KOG0218|consen 496 LRMLREWVTKPLVDVHQIEERLDAVEEITSHSSN---SIVFESINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIY 572 (1070)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHH
Confidence 478888899888887777665 5666642211 3356666665555444433333333333334456666666654
Q ss_pred HH-HHHHH-----------hCCH--------HHHHHH----------------------Hh-hhhhhhcccceeeeCCCC
Q 011731 86 VL-EYLVA-----------HGSE--------RVIDDI----------------------RE-HSYQISTLSDFQYIDSSG 122 (478)
Q Consensus 86 LL-EYLLk-----------NGSE--------rvVddl----------------------R~-hi~~Ir~L~~FqyiD~~G 122 (478)
.+ .+.-. +|.- ++|.++ +. -.++++.+.+|--.++ -
T Consensus 573 ~a~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e-~ 651 (1070)
T KOG0218|consen 573 SAVSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDE-S 651 (1070)
T ss_pred HHHHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhh-h
Confidence 33 12211 1221 222222 11 1233445555655543 3
Q ss_pred CccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhcc
Q 011731 123 RDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (478)
Q Consensus 123 kD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky~g~ 163 (478)
+|.-..||++-..+..| ++-|++-|++-+.---.|+.+
T Consensus 652 ~di~~virE~~ms~~~~---~~hLaeiRk~Lk~pnlef~~v 689 (1070)
T KOG0218|consen 652 EDIIKVIRESEMSRSQL---KEHLAEIRKYLKRPNLEFRQV 689 (1070)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCceeEEe
Confidence 45556677766555553 677888887765444445433
No 88
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=32.94 E-value=1.4e+02 Score=25.46 Aligned_cols=51 Identities=27% Similarity=0.265 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcC---hhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHH
Q 011731 43 GTLLADIAQATRN---YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSER 97 (478)
Q Consensus 43 gtlL~EIAqaTyn---~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSEr 97 (478)
..+|..|++. |. ..-..+|++.+.|.|.+..+.+-..|=||.-|..| |.+-
T Consensus 27 A~lL~~I~~~-~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l---G~~~ 80 (92)
T PF07571_consen 27 ASLLAQICRK-FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL---GPEA 80 (92)
T ss_pred HHHHHHHHHH-hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHH
Confidence 5678888875 32 23467999999999999999999999999999998 6654
No 89
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=32.52 E-value=67 Score=36.97 Aligned_cols=7 Identities=14% Similarity=0.639 Sum_probs=2.9
Q ss_pred Cchhhhh
Q 011731 76 NWRHVYK 82 (478)
Q Consensus 76 nWR~VyK 82 (478)
+|..+-.
T Consensus 126 ~~~~~~~ 132 (833)
T KOG1922|consen 126 QWLLLTR 132 (833)
T ss_pred hhhHHHH
Confidence 4444333
No 90
>PRK15054 nitrate reductase 2 subunit delta; Provisional
Probab=31.73 E-value=98 Score=31.33 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHhhhccCC-----chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhh
Q 011731 6 DQTFRDIKRGVNKKVLKV-----PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHV 80 (478)
Q Consensus 6 ~qtvrdlkr~Vkn~Vln~-----S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~V 80 (478)
+|++-+|+...+..=+.+ +..==.|.|-.+.-+..-...+|. ++..|++.|..||.+.+.-|..|
T Consensus 81 GqAmvdL~~~Y~~~G~~~~~~ELPDyLPl~LEfla~~~~~~a~~~L~----------~~~~iLe~L~~rL~~~~SpYa~l 150 (231)
T PRK15054 81 GQAMVDLLAEYEKVGLQLDCRELPDYLPLYLEYLSVLPDDQAKEGLL----------NVAPILALLGGRLKQREAPWYAL 150 (231)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcchHHHHHHHHhcCChHHHHHHHH----------HHHHHHHHHHHHHHHcCCChHHH
Confidence 567777887766653333 333345777777654322223333 44569999999999999999999
Q ss_pred hhHHHHH
Q 011731 81 YKALTVL 87 (478)
Q Consensus 81 yKALtLL 87 (478)
+.+|..|
T Consensus 151 ~~all~l 157 (231)
T PRK15054 151 FDALLQL 157 (231)
T ss_pred HHHHHHH
Confidence 9999554
No 91
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=31.59 E-value=4.2e+02 Score=26.91 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=49.9
Q ss_pred chHHHHHHHHhcCCCC-----CCCHHHHHHHHHHhcChhhHH-HHHHHHHHHhccCCCCchhhhhHH----HHHHHHHHh
Q 011731 24 PGIEQKVLDATSNEPW-----GPHGTLLADIAQATRNYHEYQ-MIIGVIWKRINDTGKNWRHVYKAL----TVLEYLVAH 93 (478)
Q Consensus 24 S~~E~kVrEATSNDpW-----GPtgtlL~EIAqaTyn~~~y~-~IM~vLwKRL~d~gKnWR~VyKAL----tLLEYLLkN 93 (478)
--.|+.+.++..++.- .+...+|..+...-.+...|. .|+.+++|- .-+.|+.+|+.| .|++-+|++
T Consensus 116 ~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~~~l~Ivv~C~RKt---E~~~W~~LF~~lg~P~dLf~~cl~~ 192 (258)
T PF07064_consen 116 HALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFPEYLEIVVNCARKT---EVRYWPYLFDYLGSPRDLFEECLEN 192 (258)
T ss_pred HHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCcchHHHHHHHHHhh---HHHHHHHHHHhcCCHHHHHHHHHHc
Confidence 3568888888877655 567788888888876666654 444454443 235899999876 678888887
Q ss_pred CCHH
Q 011731 94 GSER 97 (478)
Q Consensus 94 GSEr 97 (478)
|.-+
T Consensus 193 ~~l~ 196 (258)
T PF07064_consen 193 GNLK 196 (258)
T ss_pred CcHH
Confidence 7755
No 92
>COG2180 NarJ Nitrate reductase delta subunit [Energy production and conversion]
Probab=31.36 E-value=1.2e+02 Score=29.79 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhhhccCC-----chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhh
Q 011731 6 DQTFRDIKRGVNKKVLKV-----PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHV 80 (478)
Q Consensus 6 ~qtvrdlkr~Vkn~Vln~-----S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~V 80 (478)
+|++-+|+..-++.=+++ ++.==.+.|..+--+| ++++.--.++.-|+.+|.+||.+.+.-|+++
T Consensus 87 Gqaml~l~~~Y~~~Gl~~~~~ElPDyLPl~LEfLa~~~~----------~~a~~~L~~~~~~~~~l~~~Lee~~spYa~~ 156 (179)
T COG2180 87 GQAMLDLLQTYEKYGLEPDVRELPDYLPLMLEFLALVPE----------EAARRLLSDIRPILAELAKRLEERDSPYAYL 156 (179)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHhcCCH----------HHHHHHHHHhccHHHHHHHHHHhcCCcHHHH
Confidence 678888887776653332 3333346676666566 2222222336789999999999999999999
Q ss_pred hhHHH
Q 011731 81 YKALT 85 (478)
Q Consensus 81 yKALt 85 (478)
+++|.
T Consensus 157 ~~aL~ 161 (179)
T COG2180 157 FDALL 161 (179)
T ss_pred HHHHH
Confidence 99875
No 93
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=31.15 E-value=1.3e+02 Score=31.55 Aligned_cols=6 Identities=50% Similarity=0.927 Sum_probs=3.1
Q ss_pred cccccc
Q 011731 420 LLGSLS 425 (478)
Q Consensus 420 l~gsls 425 (478)
|||-|-
T Consensus 165 ~lgrld 170 (297)
T PF07174_consen 165 VLGRLD 170 (297)
T ss_pred Eecccc
Confidence 555554
No 94
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=30.94 E-value=3.3e+02 Score=30.90 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHhcc--CCC-CchhhhhHHHHHHHHHHhCCHHHHHHHHhhhhhhhcccc-----
Q 011731 43 GTLLADIAQATRNYHEYQMIIGVIWKRIND--TGK-NWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSD----- 114 (478)
Q Consensus 43 gtlL~EIAqaTyn~~~y~~IM~vLwKRL~d--~gK-nWR~VyKALtLLEYLLkNGSErvVddlR~hi~~Ir~L~~----- 114 (478)
+..|+.|.+..-+.++-..|++.|..++.. +.+ --+.|.+||.++.+ ...+-+.+.+-++...|...+.
T Consensus 304 Tr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~---~~~~~l~e~i~~~c~~iA~~~hGCcvL 380 (536)
T KOG2049|consen 304 TRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSK---EKNEFLYEAILRYCLDLATDQHGCCVL 380 (536)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCc---hhhhHHHHHHHHHHHHHHHhccccchh
Confidence 556677777777777788889988888653 333 34566788877654 4444444445555444433332
Q ss_pred ---eeeeCCCCCccchhHHHHHHHHHHhhcCH
Q 011731 115 ---FQYIDSSGRDQGSNVRKKSQSLVALVNDK 143 (478)
Q Consensus 115 ---FqyiD~~GkD~G~nVReKAk~Il~LL~D~ 143 (478)
+.+. .|..+...|-+.+..-+.|.+|+
T Consensus 381 q~cl~~~--~~~~rd~Lv~~i~~naL~Ls~d~ 410 (536)
T KOG2049|consen 381 QKCLDYS--RGEQRDRLVEEISRNALLLSNDP 410 (536)
T ss_pred HHHhcch--hHHHHHHHHHHHHHHhHhhhcCc
Confidence 2222 34555556666666666665554
No 95
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=30.72 E-value=1.9e+02 Score=28.94 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHhhc--CHHHHHHHHHHHHHHhhh
Q 011731 128 NVRKKSQSLVALVN--DKERIIEVRQKAAANRDK 159 (478)
Q Consensus 128 nVReKAk~Il~LL~--D~e~LreER~KAkknR~K 159 (478)
.|..|+.++-..|+ ..+.|.+.|+++.+.=.|
T Consensus 59 ~m~~~i~~~n~fl~~~~~~~~~~~~~~~~~YyKk 92 (205)
T PF12238_consen 59 LMKHKISHMNAFLNDWPPHMLEEGREKMTKYYKK 92 (205)
T ss_pred HHHHHHHHHHHHHccCchhhhhccHHHHHHHHHH
Confidence 44445555555555 234456777776655443
No 96
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=30.60 E-value=17 Score=37.95 Aligned_cols=9 Identities=0% Similarity=0.446 Sum_probs=3.8
Q ss_pred HHHHHHHhh
Q 011731 97 RVIDDIREH 105 (478)
Q Consensus 97 rvVddlR~h 105 (478)
.+|.|+++-
T Consensus 154 ~~V~e~~ds 162 (312)
T PF01213_consen 154 PYVKEMKDS 162 (312)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 344444443
No 97
>PRK15313 autotransport protein MisL; Provisional
Probab=30.51 E-value=66 Score=38.46 Aligned_cols=8 Identities=13% Similarity=0.235 Sum_probs=4.2
Q ss_pred ceeeeecC
Q 011731 432 ALAIMPSV 439 (478)
Q Consensus 432 ~l~~vp~~ 439 (478)
-|.+|-..
T Consensus 724 ~lGvMaGY 731 (955)
T PRK15313 724 HIGAMAGY 731 (955)
T ss_pred EEEEEeee
Confidence 45666543
No 98
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=30.42 E-value=71 Score=31.28 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.0
Q ss_pred HHHHHHhhcCHHHHHHHHHH
Q 011731 133 SQSLVALVNDKERIIEVRQK 152 (478)
Q Consensus 133 Ak~Il~LL~D~e~LreER~K 152 (478)
-++|-.||.|+..||..|+-
T Consensus 73 e~die~Ll~d~~IIRnr~KI 92 (187)
T PRK10353 73 EEDVERLVQDAGIIRHRGKI 92 (187)
T ss_pred HHHHHHHhcCchhHHhHHHH
Confidence 46888999999998886654
No 99
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.20 E-value=2.6e+02 Score=32.16 Aligned_cols=13 Identities=31% Similarity=0.194 Sum_probs=8.9
Q ss_pred cCCCCCCCCCCCC
Q 011731 385 EAVAPDEFDPRGS 397 (478)
Q Consensus 385 ~~~~~~~~~~~~~ 397 (478)
-...+|.++++|.
T Consensus 469 ~~~~~~~~~~~~~ 481 (624)
T PRK14959 469 VASASDAPPTLGD 481 (624)
T ss_pred CCchhcCCCCcCc
Confidence 3456777888885
No 100
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=28.74 E-value=60 Score=35.84 Aligned_cols=14 Identities=0% Similarity=0.041 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHhhc
Q 011731 128 NVRKKSQSLVALVN 141 (478)
Q Consensus 128 nVReKAk~Il~LL~ 141 (478)
.+++-.+-|.+.|.
T Consensus 106 elad~LkPI~e~i~ 119 (480)
T KOG2675|consen 106 ELADLLKPINEEIG 119 (480)
T ss_pred HHHHHhhhHHHhhh
Confidence 34444444444443
No 101
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=28.36 E-value=80 Score=25.42 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHhCCHHHHHHHHhhh--------hhhhcccceeeeC
Q 011731 79 HVYKALTVLEYLVAHGSERVIDDIREHS--------YQISTLSDFQYID 119 (478)
Q Consensus 79 ~VyKALtLLEYLLkNGSErvVddlR~hi--------~~Ir~L~~FqyiD 119 (478)
.+-|+|.||++|..+..+--+.++-+++ ..|+.|.+-.|+.
T Consensus 3 ~~~r~~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~ 51 (91)
T smart00346 3 SLERGLAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVE 51 (91)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 3568999999999883333444444333 2256666555553
No 102
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=28.06 E-value=2.4e+02 Score=26.77 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHH
Q 011731 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERV 98 (478)
Q Consensus 57 ~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErv 98 (478)
.....|+..|.+.|.++.++=|.+.=+|..|++||-+|.-+.
T Consensus 123 ~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~~~~~~ 164 (193)
T PF12612_consen 123 EELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSSGVFDS 164 (193)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhCcchhc
Confidence 345677778888888877888999999999999999987543
No 103
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=27.92 E-value=1.2e+02 Score=31.56 Aligned_cols=7 Identities=29% Similarity=0.335 Sum_probs=3.6
Q ss_pred CCCCCcc
Q 011731 307 RDGESSA 313 (478)
Q Consensus 307 ~~~~~~~ 313 (478)
|..|...
T Consensus 136 rkkeal~ 142 (274)
T PLN02983 136 RKKEALP 142 (274)
T ss_pred ecccccC
Confidence 4565543
No 104
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=27.53 E-value=74 Score=30.05 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
Q 011731 128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (478)
Q Consensus 128 nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky 160 (478)
++.+-++.|.+|++|++.+++..+++++..++|
T Consensus 318 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 350 (364)
T cd03814 318 DAEAFAAALAALLADPELRRRMAARARAEAERR 350 (364)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhc
Confidence 566689999999999999988888877764443
No 105
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=27.30 E-value=1e+02 Score=33.62 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=4.0
Q ss_pred chhcccccc
Q 011731 417 EIDLLGSLS 425 (478)
Q Consensus 417 emdl~gsls 425 (478)
+-++.++|.
T Consensus 263 ~a~~~~~~~ 271 (409)
T KOG4590|consen 263 MAEMAKRLA 271 (409)
T ss_pred hhhhhhccc
Confidence 334445544
No 106
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=27.00 E-value=2.3e+02 Score=31.56 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=21.5
Q ss_pred CCCchhhhhHHHHHHHHHHh--CCHHHHHHHHhhhhh
Q 011731 74 GKNWRHVYKALTVLEYLVAH--GSERVIDDIREHSYQ 108 (478)
Q Consensus 74 gKnWR~VyKALtLLEYLLkN--GSErvVddlR~hi~~ 108 (478)
+-+.|..||+-+|.+--|-- -=.--+.|+-...+.
T Consensus 94 dinmrKAFkSStvqDQqifdR~tlP~pl~etY~~cD~ 130 (518)
T KOG1830|consen 94 DINMRKAFKSSTVQDQQIFDRNTLPTPLTETYAQCDK 130 (518)
T ss_pred hhHHHhhhhhhhhhhhhhhccccCCchHHHHHhccCC
Confidence 56889999999998754432 223444555444443
No 107
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=26.91 E-value=97 Score=29.10 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 011731 129 VRKKSQSLVALVNDKERIIEVRQKAAAN 156 (478)
Q Consensus 129 VReKAk~Il~LL~D~e~LreER~KAkkn 156 (478)
+-+.++.|.+||+|++.+++.++++++.
T Consensus 316 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03823 316 AEDLAAALERLIDDPDLLERLRAGIEPP 343 (359)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHhHHHh
Confidence 7788999999999999998888776554
No 108
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=26.83 E-value=6e+02 Score=27.30 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=23.0
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHhcCCCCCC-CHHHHHHHHHH
Q 011731 10 RDIKRGVNKKVLKVPGIEQKVLDATSNEPWGP-HGTLLADIAQA 52 (478)
Q Consensus 10 rdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGP-tgtlL~EIAqa 52 (478)
..|+..+.+..-.+..++..+.++-.+=.||- +...|..|-+.
T Consensus 258 ~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~~Dl~~i~~~ 301 (459)
T PF10337_consen 258 KKLKATKAKLRALYAKLQAALRFLKLEISYGRLSPDDLKPIFSL 301 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCCHHHHHHHHHH
Confidence 34444444444445566666666666655654 34455555443
No 109
>PHA03378 EBNA-3B; Provisional
Probab=26.46 E-value=1.2e+02 Score=35.54 Aligned_cols=49 Identities=45% Similarity=0.853 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCC-CCCCCCCC
Q 011731 315 AVPPPGPPGVLPPPARLGASSPPAAPGAA---SPPPAPGSSSPP-AAPGASSP 363 (478)
Q Consensus 315 ~~p~~~~p~~~~p~~~~~~~~~~~~p~~~---~~~~~~~~~~~p-~~~~~~~~ 363 (478)
.-||-+.|..--||++..++.+||++-++ .|..+|+...|| ++|||++|
T Consensus 724 ~~PPa~tP~~~~~Pa~aP~p~~PPa~aP~~~~~P~~AP~~~~PPa~tPgaptP 776 (991)
T PHA03378 724 ARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTP 776 (991)
T ss_pred CCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC
No 110
>PLN03131 hypothetical protein; Provisional
Probab=26.41 E-value=1.1e+03 Score=27.69 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=8.5
Q ss_pred HHHHHHhCCHHHH
Q 011731 87 LEYLVAHGSERVI 99 (478)
Q Consensus 87 LEYLLkNGSErvV 99 (478)
|+.|...|.+++-
T Consensus 73 V~~Mk~gGN~~AN 85 (705)
T PLN03131 73 VEALQNGGNQRAR 85 (705)
T ss_pred HHHHHHhccHHHH
Confidence 6777777776543
No 111
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=26.29 E-value=2.9e+02 Score=28.44 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=26.9
Q ss_pred cChhhHHHHHHHHHHHhcc------CCCCchhhhhHHHHHHHHHHh
Q 011731 54 RNYHEYQMIIGVIWKRIND------TGKNWRHVYKALTVLEYLVAH 93 (478)
Q Consensus 54 yn~~~y~~IM~vLwKRL~d------~gKnWR~VyKALtLLEYLLkN 93 (478)
.++++|..++-.-.++|.. ..++|-+|-.||++|..|+..
T Consensus 212 l~~~~f~~~~~kWh~~i~~~l~~~L~s~eym~iRNai~vL~~i~~~ 257 (298)
T PF11262_consen 212 LSYEDFRKVLYKWHKRITKALISCLESKEYMHIRNAIIVLKKISPV 257 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhh
Confidence 4555665555433444332 567999999999999998854
No 112
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=25.76 E-value=2e+02 Score=29.60 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=52.4
Q ss_pred HHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHH----------HHHHHHHHhCCH----------HHHHHHHhhhhh-
Q 011731 50 AQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKAL----------TVLEYLVAHGSE----------RVIDDIREHSYQ- 108 (478)
Q Consensus 50 AqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKAL----------tLLEYLLkNGSE----------rvVddlR~hi~~- 108 (478)
.+.||-...+.+.|+.+.|+|.+.|+.-+.|-++| .||.++.++|+- =||+++.+|..+
T Consensus 46 L~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~ 125 (256)
T KOG3120|consen 46 LRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH 125 (256)
T ss_pred HHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH
Confidence 35577767789999999999999887766666554 589999999972 378888777544
Q ss_pred --h-hcccceeeeCCCCC
Q 011731 109 --I-STLSDFQYIDSSGR 123 (478)
Q Consensus 109 --I-r~L~~FqyiD~~Gk 123 (478)
+ +.+.+=-++|.+|.
T Consensus 126 d~F~~IfTNPa~~da~G~ 143 (256)
T KOG3120|consen 126 DLFSEIFTNPACVDASGR 143 (256)
T ss_pred HHHHHHhcCCcccCCCCc
Confidence 2 23333345565554
No 113
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alpha-helices. The residues essential for the interaction with the integrase are present in the inter-helical loop regions of the bundle structure. ; PDB: 3F9K_K 3HPG_G 3U88_C 3HPH_H 2B4J_D 1Z9E_A.
Probab=25.73 E-value=80 Score=28.30 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHH-HHHhh---hhhhhcccceeeeCCCCCccchhHHHHH
Q 011731 58 EYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID-DIREH---SYQISTLSDFQYIDSSGRDQGSNVRKKS 133 (478)
Q Consensus 58 ~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVd-dlR~h---i~~Ir~L~~FqyiD~~GkD~G~nVReKA 133 (478)
.+.+|-.-|+..|.-.. -.|-|||.+|+-|..= .|-. -++.| +..|+.|+.|. |- ..||+||
T Consensus 3 ~L~~l~~~Ik~~L~~~~---~Dv~kcL~~LdeL~~l---~vT~~mL~kn~e~V~TlkklRrY~-----gn---~~Ir~KA 68 (106)
T PF11467_consen 3 RLQELHSEIKSSLKVDN---PDVKKCLKALDELKSL---QVTSLMLQKNPECVETLKKLRRYK-----GN---QQIRKKA 68 (106)
T ss_dssp HHHHHHHHHHHTCETTE---E-HHHHHHHHHHHHTS------HHHHTTTHHHHHHHHHHTT-T-----T----HHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhcc---CCCHHHHHhCHHHHHHHHHHHHhh-----cc---HHHHHHH
Confidence 45566667777775432 2466777777766543 1111 12333 34455666773 22 5888888
Q ss_pred HHHHH
Q 011731 134 QSLVA 138 (478)
Q Consensus 134 k~Il~ 138 (478)
..|..
T Consensus 69 ~~lYn 73 (106)
T PF11467_consen 69 TELYN 73 (106)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 114
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=25.39 E-value=3.7e+02 Score=29.40 Aligned_cols=67 Identities=6% Similarity=0.091 Sum_probs=43.7
Q ss_pred hhhhhHHHHHHHHHhhhccCCchHHHH----HHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhc
Q 011731 3 KAFDQTFRDIKRGVNKKVLKVPGIEQK----VLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIN 71 (478)
Q Consensus 3 kvf~qtvrdlkr~Vkn~Vln~S~~E~k----VrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~ 71 (478)
.+|++....|+..+..+..-++.+... .+.|+.... .+..+...+.+++.-...+.++-+.|..||.
T Consensus 299 ~idekl~~~L~~at~~a~~vlp~l~~~~~~~~~~a~~~~~--~~~~~~~k~k~L~~~C~~~~~~T~~L~~rLs 369 (445)
T PF10428_consen 299 RIDEKLYLALQNATDLALHVLPQLTSQFSKSARAAAQQRA--IPPSLVQKWKELISKCNSAIDQTERLKSRLS 369 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666655543333444333 445555544 5677777788888888888899999999985
No 115
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=25.30 E-value=1.1e+02 Score=28.12 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH
Q 011731 129 VRKKSQSLVALVNDKERIIEVRQKAA 154 (478)
Q Consensus 129 VReKAk~Il~LL~D~e~LreER~KAk 154 (478)
+.+-++.|.+|++|++.+++.+++++
T Consensus 328 ~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 328 PEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 78889999999999999888887776
No 116
>PRK13410 molecular chaperone DnaK; Provisional
Probab=25.27 E-value=2.4e+02 Score=32.16 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHhhc
Q 011731 128 NVRKKSQSLVALVN 141 (478)
Q Consensus 128 nVReKAk~Il~LL~ 141 (478)
.|+++..++-+.|.
T Consensus 563 ~~~~~l~~~~~wL~ 576 (668)
T PRK13410 563 AVESAMRDVQDSLE 576 (668)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444443
No 117
>PF08597 eIF3_subunit: Translation initiation factor eIF3 subunit; InterPro: IPR013906 This shows protein subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae (Baker's yeast) protein Q05775 from SWISSPROT has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p []. ; PDB: 3BPJ_D 2KRB_B.
Probab=25.10 E-value=1.6e+02 Score=29.22 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHhhcCHHHHHHHHHHH
Q 011731 127 SNVRKKSQSLVALVNDKERIIEVRQKA 153 (478)
Q Consensus 127 ~nVReKAk~Il~LL~D~e~LreER~KA 153 (478)
..||+.+..|-.|.+ +++++|+...
T Consensus 181 ~~ikki~s~l~~l~n--EK~K~EK~~~ 205 (245)
T PF08597_consen 181 EDIKKISSSLTVLAN--EKQKAEKAAK 205 (245)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHH---
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHhh
Confidence 468999999888887 6666777665
No 118
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=24.79 E-value=3.1e+02 Score=25.48 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=32.4
Q ss_pred HHHHHHHHhcc--CCCCchhhhhHHHHHHHHHHhCCHHH-----HHHHHhhhhhhhc
Q 011731 62 IIGVIWKRIND--TGKNWRHVYKALTVLEYLVAHGSERV-----IDDIREHSYQIST 111 (478)
Q Consensus 62 IM~vLwKRL~d--~gKnWR~VyKALtLLEYLLkNGSErv-----VddlR~hi~~Ir~ 111 (478)
-+..++.|+.. ..+++....+++.|+.=++.+|+.++ ..|++.-+.+|+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~ 78 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK 78 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444443 44567888899999999999985433 4566665555544
No 119
>PTZ00432 falcilysin; Provisional
Probab=24.71 E-value=4e+02 Score=32.47 Aligned_cols=31 Identities=13% Similarity=0.331 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhC
Q 011731 59 YQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHG 94 (478)
Q Consensus 59 y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNG 94 (478)
|..+++.|.+++....+.|..+.| +|||.|=
T Consensus 534 ~~~~l~~lr~~~~~~~~y~e~Li~-----k~ll~N~ 564 (1119)
T PTZ00432 534 FEKLLNELKLRIDNESKYLEKLIE-----KHLLNNN 564 (1119)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHH-----HHccCCC
Confidence 677888888888555567777666 5666553
No 120
>PRK13410 molecular chaperone DnaK; Provisional
Probab=24.33 E-value=3.4e+02 Score=31.08 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHhh
Q 011731 128 NVRKKSQSLVALV 140 (478)
Q Consensus 128 nVReKAk~Il~LL 140 (478)
.++++-+.+.+.|
T Consensus 582 ~~~~~~~~~~~~l 594 (668)
T PRK13410 582 ELDLAVADLQEAL 594 (668)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 121
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=24.09 E-value=2.8e+02 Score=31.24 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=26.2
Q ss_pred HHHHHHHhhhhhhhccc--ce--eeeCCCCC--ccchhHHHHHHHHHHhhc
Q 011731 97 RVIDDIREHSYQISTLS--DF--QYIDSSGR--DQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 97 rvVddlR~hi~~Ir~L~--~F--qyiD~~Gk--D~G~nVReKAk~Il~LL~ 141 (478)
.|+++|..|+..|-.=+ +| ||+=++|. +.-+.|....++|+.|-.
T Consensus 355 ~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~ll~~Sq 405 (503)
T KOG1488|consen 355 PLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGNLLSMSQ 405 (503)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhhHHHHHH
Confidence 47777777776664322 44 55544444 445566666666666654
No 122
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=24.05 E-value=2e+02 Score=32.55 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHHhhcCH---------HHHHHHHHHHHHHhhhhhcccCCCccCCC
Q 011731 125 QGSNVRKKSQSLVALVNDK---------ERIIEVRQKAAANRDKFRNTTAGGMYRPG 172 (478)
Q Consensus 125 ~G~nVReKAk~Il~LL~D~---------e~LreER~KAkknR~Ky~g~~~gg~~~~g 172 (478)
.-..|+++..++.++|.+. ++|++.+........++...+.|||-+.+
T Consensus 568 e~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~ 624 (653)
T PTZ00009 568 DKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGM 624 (653)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 3457788888888888762 33344444444444444445566775543
No 123
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=24.00 E-value=1.4e+02 Score=23.98 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 011731 128 NVRKKSQSLVALVNDKERIIEVRQKAAAN 156 (478)
Q Consensus 128 nVReKAk~Il~LL~D~e~LreER~KAkkn 156 (478)
.+.+-+..|..||+|+++.++..+++++.
T Consensus 48 ~~~el~~~i~~ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 48 DPEELAEKIEYLLENPEERRRIAKNARER 76 (92)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 78888999999999999988888777655
No 124
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=23.97 E-value=5e+02 Score=22.81 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=36.7
Q ss_pred cChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhhh
Q 011731 54 RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHS 106 (478)
Q Consensus 54 yn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~hi 106 (478)
.+.+..-..++.....|.+.+..-.-.++++..||-|..+.-.++|..+|.|+
T Consensus 15 g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 15 GDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL 67 (145)
T ss_pred CCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 33444444555555555555666667778888888888888888999999876
No 125
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.95 E-value=5.2e+02 Score=28.64 Aligned_cols=63 Identities=13% Similarity=0.026 Sum_probs=35.2
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccC------------CCCch-------------hhhhHH
Q 011731 30 VLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDT------------GKNWR-------------HVYKAL 84 (478)
Q Consensus 30 VrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~------------gKnWR-------------~VyKAL 84 (478)
|++....+..-.+...+..|++.+-. +...++..|-+.+... +..|. .+-+||
T Consensus 184 L~~i~~~egi~i~~~Al~~ia~~s~G--dlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al~~~d~~~Al 261 (504)
T PRK14963 184 LRRLLEAEGREAEPEALQLVARLADG--AMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAALAQGDAAEAL 261 (504)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444566666666666543 3445555554433221 23333 456788
Q ss_pred HHHHHHHHhC
Q 011731 85 TVLEYLVAHG 94 (478)
Q Consensus 85 tLLEYLLkNG 94 (478)
.+++-|+..|
T Consensus 262 ~~l~~Ll~~G 271 (504)
T PRK14963 262 SGAAQLYRDG 271 (504)
T ss_pred HHHHHHHHcC
Confidence 8888888888
No 126
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=23.79 E-value=22 Score=26.80 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHhCCHHHHHHHHhh
Q 011731 80 VYKALTVLEYLVAHGSERVIDDIREH 105 (478)
Q Consensus 80 VyKALtLLEYLLkNGSErvVddlR~h 105 (478)
|-|+|.||++|..++..--+.+|-++
T Consensus 2 l~ral~iL~~l~~~~~~~t~~eia~~ 27 (52)
T PF09339_consen 2 LERALRILEALAESGGPLTLSEIARA 27 (52)
T ss_dssp HHHHHHHHHCHHCTBSCEEHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 56999999999999886444444443
No 127
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=23.74 E-value=5.5e+02 Score=23.26 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhh-HHHHHHHHHHHhc---cCCCCchhh
Q 011731 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHE-YQMIIGVIWKRIN---DTGKNWRHV 80 (478)
Q Consensus 5 f~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~-y~~IM~vLwKRL~---d~gKnWR~V 80 (478)
|.-.+..+++.|..+...+..+=.++.+|..+.. ..++.+|.+.-...+. +.+|...+...|. .....++.+
T Consensus 3 ~~~~l~~~~~el~~m~~~~~~ml~~~~~~~~~~d----~~~~~~i~~~e~~id~l~~~i~~~~l~~i~~~~~~~~~~~~~ 78 (212)
T TIGR02135 3 FDEELKELREELLEMGGLVEEQLEDAVRALTEKD----RELARKVIEDDDQINALEVKIEEKCLRLIALQQPVAKDLRLI 78 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----HHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhCccHhhHHHH
Confidence 4445666666666654433344444556654422 5677777776655554 3466554333333 122445544
Q ss_pred hhHHHHHHHH
Q 011731 81 YKALTVLEYL 90 (478)
Q Consensus 81 yKALtLLEYL 90 (478)
.-.|.++..|
T Consensus 79 ~~~~~i~~~l 88 (212)
T TIGR02135 79 ISIIKISSDL 88 (212)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 128
>TIGR02986 restrict_Alw26I type II restriction endonuclease, Alw26I/Eco31I/Esp3I family. Members of this family are type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family. Characterized specificities of three members are GGTCTC, CGTCTC, and the shared subsequence GTCTC.
Probab=23.63 E-value=1.9e+02 Score=31.72 Aligned_cols=25 Identities=16% Similarity=0.489 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHhhhh
Q 011731 83 ALTVLEYLVAHGSERVIDDIREHSY 107 (478)
Q Consensus 83 ALtLLEYLLkNGSErvVddlR~hi~ 107 (478)
.|.||.||+++|...|+..+..--+
T Consensus 345 ~m~iL~~i~~~G~~~fL~t~L~~eY 369 (424)
T TIGR02986 345 YMRILWYILSNGGAEFLATLLKPEY 369 (424)
T ss_pred HHHHHHHHHHcccHHHHHHHcChhh
Confidence 4789999999999999998865444
No 129
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=23.46 E-value=1.1e+02 Score=27.01 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHHhhhcc---CCchHHHH--HHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCC
Q 011731 10 RDIKRGVNKKVL---KVPGIEQK--VLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTG 74 (478)
Q Consensus 10 rdlkr~Vkn~Vl---n~S~~E~k--VrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~g 74 (478)
..+++..+..|. .+++.++. ++.++. |....-|..+......|..+++.|.+|.....
T Consensus 9 ~~F~~~F~~~v~~n~~~~d~~K~~~L~~~L~-------G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg~~~ 71 (145)
T PF03564_consen 9 PEFIDQFDSLVHENPDLSDIEKLNYLRSCLK-------GEAKELIRGLPLSEENYEEAWELLEERYGNPR 71 (145)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHhc-------chHHHHHHcccccchhhHHHHHHHHHHhCCch
Confidence 344555555553 35777766 455553 44566677777778889999999999997653
No 130
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=23.44 E-value=4.2e+02 Score=23.21 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHhCCH--HHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 011731 80 VYKALTVLEYLVAHGSE--RVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANR 157 (478)
Q Consensus 80 VyKALtLLEYLLkNGSE--rvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR 157 (478)
+-++|.+++-|+.+|-+ +|++++.+|+..|-.++...-. .........-.++.+++.+.+. .+.|..-=+...+.+
T Consensus 30 ~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~-~~~~~~~~~~~~~~~~~a~~~~-~~~l~~~~~~l~~~~ 107 (143)
T PF12169_consen 30 AAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDK-SNLLELSEEEEEKLKELAKKFS-PERLQRILQILLEAE 107 (143)
T ss_dssp HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGG-S-SG--CTTTHHHHHHHHHHS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCch-hhcccCCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 45889999999999875 7888888877665444332200 0112233344555566656554 334433333334444
Q ss_pred hhh
Q 011731 158 DKF 160 (478)
Q Consensus 158 ~Ky 160 (478)
+++
T Consensus 108 ~~l 110 (143)
T PF12169_consen 108 NEL 110 (143)
T ss_dssp HHT
T ss_pred HHh
Confidence 444
No 131
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=23.41 E-value=2.1e+02 Score=25.66 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHhcCh--------hhHHHHHHHHHHHhcc
Q 011731 42 HGTLLADIAQATRNY--------HEYQMIIGVIWKRIND 72 (478)
Q Consensus 42 tgtlL~EIAqaTyn~--------~~y~~IM~vLwKRL~d 72 (478)
...+..|+|++-|+. -.+..|+..|.+|-..
T Consensus 56 ~~~~i~E~ADLlYHllVlL~~~gv~~~dV~~eL~~R~~~ 94 (105)
T PRK00400 56 REELVYEIADLLYHLLVLLAARGISLEDVLAELERREGL 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCC
Confidence 478888999998886 3457888888888753
No 132
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.24 E-value=5.7e+02 Score=30.32 Aligned_cols=10 Identities=40% Similarity=0.710 Sum_probs=4.4
Q ss_pred hHHHHHHHHH
Q 011731 82 KALTVLEYLV 91 (478)
Q Consensus 82 KALtLLEYLL 91 (478)
++|.+||-|+
T Consensus 217 ~Al~eLEKLi 226 (824)
T PRK07764 217 DSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 133
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=23.22 E-value=1.1e+02 Score=29.76 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHHHH-hhhh
Q 011731 128 NVRKKSQSLVALVNDKERIIEVRQKAAAN-RDKF 160 (478)
Q Consensus 128 nVReKAk~Il~LL~D~e~LreER~KAkkn-R~Ky 160 (478)
.+.+-++.|.+||+|++++++.++++++. +++|
T Consensus 322 d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~ 355 (367)
T cd05844 322 DVAALAAALGRLLADPDLRARMGAAGRRRVEERF 355 (367)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHC
Confidence 56788999999999999888877776553 3444
No 134
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=23.18 E-value=1.5e+02 Score=22.41 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=26.4
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHh
Q 011731 46 LADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH 93 (478)
Q Consensus 46 L~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkN 93 (478)
+.+||+...-... .+...+.+.+....+.|....+.-.+++||..+
T Consensus 4 ~~~la~~~~~s~~--~l~~~f~~~~~~s~~~~~~~~r~~~a~~~l~~~ 49 (84)
T smart00342 4 LEDLAEALGMSPR--HLQRLFKKETGTTPKQYLRDRRLERARRLLRDT 49 (84)
T ss_pred HHHHHHHhCCCHH--HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcC
Confidence 5667766533211 122222333334556777777877888888777
No 135
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=22.86 E-value=1.5e+02 Score=30.15 Aligned_cols=6 Identities=33% Similarity=0.529 Sum_probs=2.7
Q ss_pred CCccch
Q 011731 122 GRDQGS 127 (478)
Q Consensus 122 GkD~G~ 127 (478)
+|++|.
T Consensus 8 ~K~yGs 13 (253)
T PF05308_consen 8 NKPYGS 13 (253)
T ss_pred CCCCcc
Confidence 444443
No 136
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=22.32 E-value=2e+02 Score=33.90 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=45.6
Q ss_pred HHHHHHHhhhccCCchHHHH---HHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHH
Q 011731 10 RDIKRGVNKKVLKVPGIEQK---VLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86 (478)
Q Consensus 10 rdlkr~Vkn~Vln~S~~E~k---VrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtL 86 (478)
|-||+-+.+=+.+...++.. |.+..++ ..+..+|-..-....+..+|+..|... .-..+.|..++++|..
T Consensus 287 RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~------~~l~~~l~~~L~~i~Dlerll~ri~~~-~~~~~dl~~l~~~l~~ 359 (840)
T TIGR01070 287 RLLKRWLHRPLRDREVLEARQDTVEVLLRH------FFLREGLRPLLKEVGDLERLAARVALG-NARPRDLARLRTSLEQ 359 (840)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHhC------HHHHHHHHHHhccCcCHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 55565555555555555544 5566554 246667766666666777777766532 1245788888888876
Q ss_pred HHHH
Q 011731 87 LEYL 90 (478)
Q Consensus 87 LEYL 90 (478)
+..|
T Consensus 360 ~~~l 363 (840)
T TIGR01070 360 LPEL 363 (840)
T ss_pred HHHH
Confidence 5544
No 137
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=22.21 E-value=1e+02 Score=31.90 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=47.8
Q ss_pred hccCCchHHHHHHHHhc---CCCCCCCHH------HHHHHHHHhcChhhHHHHHHHHHHHhccC-CCCchhhhhHH--HH
Q 011731 19 KVLKVPGIEQKVLDATS---NEPWGPHGT------LLADIAQATRNYHEYQMIIGVIWKRINDT-GKNWRHVYKAL--TV 86 (478)
Q Consensus 19 ~Vln~S~~E~kVrEATS---NDpWGPtgt------lL~EIAqaTyn~~~y~~IM~vLwKRL~d~-gKnWR~VyKAL--tL 86 (478)
++.++.....++..+.. ++.|..+.. --..+...+.+...+.+|++.|..|+.+. +.-...|-.+- -.
T Consensus 162 K~~~~k~~~e~Ll~~LgeFLeeHfPlp~~~~~~~Kkk~~~~e~~~~~~~l~eilE~LmN~l~~~p~DpYv~i~~~~WPpy 241 (268)
T PF11802_consen 162 KIEKIKEYKEKLLSFLGEFLEEHFPLPDEQGNAKKKKKGEDEPSAQLITLREILEILMNKLLDSPHDPYVKIDDSFWPPY 241 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhhhhhccccccchhhhHHHHHHHHHHHHhcCCCCCCceecCcccChHH
Confidence 34444455555666655 345544332 23345566777788899999999998853 33334444433 47
Q ss_pred HHHHHHhCC
Q 011731 87 LEYLVAHGS 95 (478)
Q Consensus 87 LEYLLkNGS 95 (478)
+|+||++|=
T Consensus 242 ie~LlR~GI 250 (268)
T PF11802_consen 242 IELLLRSGI 250 (268)
T ss_pred HHHHHHcCC
Confidence 899999984
No 138
>PF14979 TMEM52: Transmembrane 52
Probab=22.15 E-value=91 Score=29.89 Aligned_cols=18 Identities=39% Similarity=0.720 Sum_probs=14.1
Q ss_pred CCCCCChHHhhhccCCCC
Q 011731 286 IGAPPSYEEAVSESRSPV 303 (478)
Q Consensus 286 ~~aPpsyeea~~~~~~~~ 303 (478)
..-||+|||||.-.++..
T Consensus 117 ~e~PP~YeEAlkM~k~r~ 134 (154)
T PF14979_consen 117 LELPPSYEEALKMAKPRF 134 (154)
T ss_pred CCCCCCHHHHHhhccccc
Confidence 447999999999866544
No 139
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=22.13 E-value=3.9e+02 Score=24.77 Aligned_cols=31 Identities=6% Similarity=0.164 Sum_probs=16.3
Q ss_pred cCCchHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 011731 21 LKVPGIEQKVLDATSNEPWGPHGTLLADIAQ 51 (478)
Q Consensus 21 ln~S~~E~kVrEATSNDpWGPtgtlL~EIAq 51 (478)
+.+++.|.-|.++.=..--.....++.+|..
T Consensus 2 ~~Is~aE~eVM~ilW~~~~~t~~eI~~~l~~ 32 (123)
T COG3682 2 MSISAAEWEVMEILWSRGPATVREIIEELPA 32 (123)
T ss_pred CcccHHHHHHHHHHHHcCCccHHHHHHHHhh
Confidence 4567777777666633333333444444444
No 140
>PRK15313 autotransport protein MisL; Provisional
Probab=22.11 E-value=1.8e+02 Score=35.10 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=3.4
Q ss_pred CChHHhhh
Q 011731 290 PSYEEAVS 297 (478)
Q Consensus 290 psyeea~~ 297 (478)
..||=-|.
T Consensus 539 GAY~Y~L~ 546 (955)
T PRK15313 539 GAYDYNVV 546 (955)
T ss_pred eeEEEEEE
Confidence 34444443
No 141
>PRK14136 recX recombination regulator RecX; Provisional
Probab=21.98 E-value=3.6e+02 Score=28.57 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=28.3
Q ss_pred ChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCH-HHHHHHHh
Q 011731 55 NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSE-RVIDDIRE 104 (478)
Q Consensus 55 n~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSE-rvVddlR~ 104 (478)
..+++..+..+|.|++......+.. -..++.||+..|=. ++|..+..
T Consensus 253 eEDE~E~A~~L~eKK~~~~~~d~ke---k~K~iRfL~rRGFS~D~I~~vLk 300 (309)
T PRK14136 253 RETEFERAQAVWRKKFGALPQTPAE---RAKQARFLAARGFSSATIVKLLK 300 (309)
T ss_pred cHhHHHHHHHHHHHHhcccCcCHHH---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 3455666667777777543333322 33568999999964 56655443
No 142
>PF14390 DUF4420: Domain of unknown function (DUF4420)
Probab=21.94 E-value=3.4e+02 Score=27.59 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 011731 126 GSNVRKKSQSLVALVNDKERIIEVRQKAA 154 (478)
Q Consensus 126 G~nVReKAk~Il~LL~D~e~LreER~KAk 154 (478)
|..|-+..++|.++|.|.+.+..-.++..
T Consensus 225 G~sL~~lv~~i~~~l~~~~~~~~f~~~L~ 253 (306)
T PF14390_consen 225 GISLPDLVDEIRSRLDDPEALDKFEEKLA 253 (306)
T ss_pred ccCHHHHHHHHHHhhcChHHHHHHHHHHH
Confidence 99999999999999977777766555544
No 143
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.86 E-value=2.6e+02 Score=31.75 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHhCCH--HHHHHHHhhhhhh
Q 011731 80 VYKALTVLEYLVAHGSE--RVIDDIREHSYQI 109 (478)
Q Consensus 80 VyKALtLLEYLLkNGSE--rvVddlR~hi~~I 109 (478)
..++|.+++.|+++|-+ .++.+|..++..|
T Consensus 262 ~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDL 293 (620)
T PRK14948 262 PESLLDSCRQLLDRGREPLAILQGLAAFYRDL 293 (620)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34577788888887754 4566666655444
No 144
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=21.84 E-value=3.8e+02 Score=32.52 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhhhhh------hh--ccc
Q 011731 42 HGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQ------IS--TLS 113 (478)
Q Consensus 42 tgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~hi~~------Ir--~L~ 113 (478)
.-++|.+|...---++-+..=++.||++=.+- -+++=++|..|..-++=+.-+-|.++.--+-. -. +|-
T Consensus 542 ~~kqLk~i~~~d~l~el~e~ekd~lW~~R~~~---~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLL 618 (1076)
T KOG0904|consen 542 LRKQLKEILARDPLSELTEQEKDLLWHLRHEI---LKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELL 618 (1076)
T ss_pred hHHHHHHHHhcCCcccchHHHHHHHHHHHHHH---HHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHh
Confidence 34666777663333445566677788643221 13445788888888888887777776544432 22 334
Q ss_pred ceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 011731 114 DFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAAN 156 (478)
Q Consensus 114 ~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkkn 156 (478)
+|.|.|+ +||.-|-+-++.|+|+++++=-=+-++.+
T Consensus 619 d~nypD~-------~VR~fAV~~L~~Lsdd~l~~YLLqLVQal 654 (1076)
T KOG0904|consen 619 DCNYPDP-------NVRAFAVRCLEQLSDDDLLQYLLQLVQAL 654 (1076)
T ss_pred cCCCCcH-------HHHHHHHHHHHhcChhHHHHHHHHHHHHH
Confidence 7899986 89999988889999999987655555444
No 145
>PF10978 DUF2785: Protein of unknown function (DUF2785); InterPro: IPR021247 Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.
Probab=21.70 E-value=2.6e+02 Score=26.54 Aligned_cols=92 Identities=13% Similarity=0.244 Sum_probs=59.5
Q ss_pred HHHhhhccCCchHHHHHHHHhcCCCCCCC----HHHHHHHHHHh-cChhhHHHHHHHHHHHhcc------CCCCchhhhh
Q 011731 14 RGVNKKVLKVPGIEQKVLDATSNEPWGPH----GTLLADIAQAT-RNYHEYQMIIGVIWKRIND------TGKNWRHVYK 82 (478)
Q Consensus 14 r~Vkn~Vln~S~~E~kVrEATSNDpWGPt----gtlL~EIAqaT-yn~~~y~~IM~vLwKRL~d------~gKnWR~VyK 82 (478)
..+.+.++.|-..|+..|==..+.-|-=. +.++.||+... +...++..||.+|.+.+.. .+..||-+
T Consensus 42 ~~~~~~~~~Yl~~E~D~RGfv~~~GWaHa~AH~aD~l~el~~~p~~~~~~~~~lL~~i~~~~~~~~~~~~~~EdeRLa-- 119 (175)
T PF10978_consen 42 QELIDQLIRYLLLEKDTRGFVEEKGWAHAFAHGADLLDELVQHPELDRADKIELLAAILEKYKRLSTPFIDGEDERLA-- 119 (175)
T ss_pred HHHHHHHHHHHHHccccccCCccCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCcceeCCChhHHH--
Confidence 34555555566667666655555666322 23455556554 4667889999999988865 46788865
Q ss_pred HHHHHHHHHHhC--C-HHHHHHHHhhhhhh
Q 011731 83 ALTVLEYLVAHG--S-ERVIDDIREHSYQI 109 (478)
Q Consensus 83 ALtLLEYLLkNG--S-ErvVddlR~hi~~I 109 (478)
.+|-++++++ + +.++.|++.-...+
T Consensus 120 --~~~~~~l~~~~l~~~~~~~wl~~~~~~l 147 (175)
T PF10978_consen 120 --TALIELLNRNKLYQEELLSWLKSWRQDL 147 (175)
T ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 4677888887 4 45778877653333
No 146
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=21.70 E-value=34 Score=35.68 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=9.1
Q ss_pred HHHHHHHHhhhhhhhccccee
Q 011731 96 ERVIDDIREHSYQISTLSDFQ 116 (478)
Q Consensus 96 ErvVddlR~hi~~Ir~L~~Fq 116 (478)
+-|...|..+..+|......+
T Consensus 76 ~~v~~aF~~qr~~L~~as~~k 96 (312)
T PF01213_consen 76 QLVKKAFQAQRKFLLVASKCK 96 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHBE
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 334444444444444444443
No 147
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=20.61 E-value=94 Score=24.65 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=32.8
Q ss_pred HHHHHHHHHhccCCCCchhhhhHHHHHHHHHHh-------CCHHHHHHHHh
Q 011731 61 MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH-------GSERVIDDIRE 104 (478)
Q Consensus 61 ~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkN-------GSErvVddlR~ 104 (478)
.+++.+.+|++-++++--.++|-..+++||+.+ |.+.+|+++-+
T Consensus 6 ~~Ie~~A~~~~~s~~ea~~~~~~~~~~~~i~~~Yd~lHt~s~~yivedi~~ 56 (62)
T PF12668_consen 6 FCIEEFAKKLNISGEEAYNYFKRSGVIDYIIDCYDVLHTQSDEYIVEDIIE 56 (62)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcCcHHHHHHcchHHHHCcHHHHHHHHHH
Confidence 367778888888888888888888888888776 55566666544
No 148
>PF02961 BAF: Barrier to autointegration factor; InterPro: IPR004122 Barrier-to-autointegration factor (BAF) is an essential protein that is highly conserved in metazoan evolution, and which may act as a DNA-bridging protein []. BAF binds directly to double-stranded DNA, to transcription activators, and to inner nuclear membrane proteins, including lamin A filament proteins that anchor nuclear-pore complexes in place, and nuclear LEM-domain proteins that bind to laminins filaments and chromatin. New findings suggest that BAF has structural roles in nuclear assembly and chromatin organisation, represses gene expression and might interlink chromatin structure, nuclear architecture and gene regulation in metazoans []. BAF can be exploited by retroviruses to act as a host component of pre-integration complexes, which promote the integration of the retroviral DNA into the host chromosome by preventing autointegration of retroviral DNA []. BAF might contribute to the assembly or activity of retroviral pre-integration complexes through direct binding to the retroviral proteins p55 Gag and matrix, as well as to DNA.; GO: 0003677 DNA binding; PDB: 2ODG_A 2BZF_A 2EZX_B 2EZY_B 1QCK_B 1CI4_B 2EZZ_B.
Probab=20.56 E-value=1.5e+02 Score=26.25 Aligned_cols=45 Identities=29% Similarity=0.362 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhhHHHHH-HHHHHhCCHH-HHHHHHhhh
Q 011731 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVL-EYLVAHGSER-VIDDIREHS 106 (478)
Q Consensus 57 ~~y~~IM~vLwKRL~d~gKnWR~VyKALtLL-EYLLkNGSEr-vVddlR~hi 106 (478)
.....|=.+|-+||.+.|- -||-+|| .|||.+-.++ |.+|+++-.
T Consensus 22 ~~laGIG~~lg~~L~~~Gf-----dKAy~vLGqfLll~kde~~F~~WLk~~~ 68 (89)
T PF02961_consen 22 TELAGIGPVLGKRLEEKGF-----DKAYVVLGQFLLLKKDEELFQDWLKDTC 68 (89)
T ss_dssp GGSTT--HHHHHHHHHTT-------BHHHHHHHHHHTTT-HHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHCCC-----cHHHHHhhhhhhccCcHHHHHHHHHHHh
Confidence 3456788999999998873 4666665 6999988875 888888743
No 149
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.55 E-value=2.2e+02 Score=32.95 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHhhhhhhhcccce
Q 011731 83 ALTVLEYLVAHGSERVIDDIREHSYQISTLSDF 115 (478)
Q Consensus 83 ALtLLEYLLkNGSErvVddlR~hi~~Ir~L~~F 115 (478)
+|.++.|+|+|-.|.-.-++.-.+.-|+.+-+|
T Consensus 183 ~l~ivpfflkHNaE~dAiDlL~Evg~Iekv~~f 215 (881)
T COG5110 183 GLEIVPFFLKHNAEFDAIDLLVEVGGIEKVLDF 215 (881)
T ss_pred HHHHhHHHHhcccchHHHHHHHHhcchhhhhhh
Confidence 789999999997775444444456666666655
No 150
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.54 E-value=1e+02 Score=34.19 Aligned_cols=89 Identities=13% Similarity=0.296 Sum_probs=45.5
Q ss_pred HHHHHhhhccCCchHHHHHHHHhcC------------CCCCCCHHHH-HHHHHHhcC-hhhHHHHHHHHHHHhccC---C
Q 011731 12 IKRGVNKKVLKVPGIEQKVLDATSN------------EPWGPHGTLL-ADIAQATRN-YHEYQMIIGVIWKRINDT---G 74 (478)
Q Consensus 12 lkr~Vkn~Vln~S~~E~kVrEATSN------------DpWGPtgtlL-~EIAqaTyn-~~~y~~IM~vLwKRL~d~---g 74 (478)
||+++.+.-....++++|..|.+.+ +..|..|.-+ .||..+.-+ +..|.+|.+.| +.|..- =
T Consensus 129 lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i~~~i-~~l~~aie~Y 207 (507)
T PF05600_consen 129 LKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPSLFDEIVEAI-SDLQEAIEYY 207 (507)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHH
Confidence 4455555444445555555444432 2356665544 244444433 24466666666 334431 0
Q ss_pred CCchh------hhhHHHHHHHHHHhCCHHHHHH
Q 011731 75 KNWRH------VYKALTVLEYLVAHGSERVIDD 101 (478)
Q Consensus 75 KnWR~------VyKALtLLEYLLkNGSErvVdd 101 (478)
+.|+. .-.+|-+|.||..||.-.+..|
T Consensus 208 ~~f~~~~~~~~~~~~Lp~L~~v~~~gn~tvye~ 240 (507)
T PF05600_consen 208 QAFVEFVHDESESEVLPLLRFVQEHGNTTVYEW 240 (507)
T ss_pred HHHHHHHHcCccchhhHHHHHHHhCCCCcHhHH
Confidence 12222 2236788888888886555543
No 151
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=20.29 E-value=3.6e+02 Score=27.31 Aligned_cols=36 Identities=31% Similarity=0.347 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHhhcCHHHHHHHHHH-HHHHhhhhhcc
Q 011731 127 SNVRKKSQSLVALVNDKERIIEVRQK-AAANRDKFRNT 163 (478)
Q Consensus 127 ~nVReKAk~Il~LL~D~e~LreER~K-AkknR~Ky~g~ 163 (478)
..||+.+..+.+|. +++.++++=-+ .++.|+||+..
T Consensus 117 ~~i~eA~~~~~~~~-~~~i~~e~igk~I~~lR~KYR~a 153 (221)
T COG1458 117 EAIREASIECYELE-KEEIIREVVGKIIRKLREKYREA 153 (221)
T ss_pred HHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 35677776666666 46666665554 77889999886
No 152
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.27 E-value=1.7e+02 Score=28.00 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 011731 128 NVRKKSQSLVALVNDKERIIEVRQKAAAN 156 (478)
Q Consensus 128 nVReKAk~Il~LL~D~e~LreER~KAkkn 156 (478)
++-+.++.|..||+|++.+++.++++++.
T Consensus 318 d~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 346 (357)
T cd03795 318 DPAALAEAIRRLLEDPELRERLGEAARER 346 (357)
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 57789999999999999988888877665
No 153
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.18 E-value=5.5e+02 Score=30.15 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHhCCH--HHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 011731 80 VYKALTVLEYLVAHGSE--RVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANR 157 (478)
Q Consensus 80 VyKALtLLEYLLkNGSE--rvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR 157 (478)
+-|+|.+|+-|+..|.+ ++++++..+++.| .-++|......+....++++-+++.+.+.... |..-=+...+.+
T Consensus 260 ~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdl---ll~~~~~~~~~~~~~~~~~~~~~la~~~s~~~-l~~~~qi~l~~~ 335 (702)
T PRK14960 260 REKVSQLLLQFRYQALDVSLVLDQLISTLHEL---ALLQYLPELGLKYSEEINAKILQLSKLISAQD-LQLYYQIACKGR 335 (702)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---HHHHhcccccccccHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHH
Confidence 45677788888887773 4445444444332 22333322223334466777777777775444 433334444444
Q ss_pred hhh
Q 011731 158 DKF 160 (478)
Q Consensus 158 ~Ky 160 (478)
..+
T Consensus 336 ~~l 338 (702)
T PRK14960 336 SDL 338 (702)
T ss_pred HHh
Confidence 444
No 154
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=20.16 E-value=2.8e+02 Score=27.79 Aligned_cols=6 Identities=50% Similarity=0.811 Sum_probs=3.1
Q ss_pred hHHhhh
Q 011731 292 YEEAVS 297 (478)
Q Consensus 292 yeea~~ 297 (478)
|||.|.
T Consensus 131 f~elVk 136 (205)
T PF12238_consen 131 FEELVK 136 (205)
T ss_pred HHHHhh
Confidence 555544
No 155
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.10 E-value=3.8e+02 Score=26.28 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCC---HHHHHHHHhhhhhhhccccee--eeCCCCCccchhHHHHHH
Q 011731 60 QMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS---ERVIDDIREHSYQISTLSDFQ--YIDSSGRDQGSNVRKKSQ 134 (478)
Q Consensus 60 ~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGS---ErvVddlR~hi~~Ir~L~~Fq--yiD~~GkD~G~nVReKAk 134 (478)
..|+--|.+.|+.+ +-..+-.+|.+|..||.-+. +..|...|.-+.++..++.=. ..|.=....+.++++...
T Consensus 79 PqLI~plk~AL~tr--~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~ 156 (183)
T PF10274_consen 79 PQLIIPLKRALNTR--DPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQ 156 (183)
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHH
Confidence 34666667777665 55677778888888866533 566666665555544333211 111100134556666666
Q ss_pred HHHHhhc
Q 011731 135 SLVALVN 141 (478)
Q Consensus 135 ~Il~LL~ 141 (478)
+.+++|+
T Consensus 157 etL~~lE 163 (183)
T PF10274_consen 157 ETLELLE 163 (183)
T ss_pred HHHHHHH
Confidence 6666654
No 156
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.02 E-value=1e+02 Score=35.60 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhhHHHHHH--HHHHhCCHHHHHHHHhhhhhhhcccceeeeC-CCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 011731 80 VYKALTVLE--YLVAHGSERVIDDIREHSYQISTLSDFQYID-SSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAAN 156 (478)
Q Consensus 80 VyKALtLLE--YLLkNGSErvVddlR~hi~~Ir~L~~FqyiD-~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkkn 156 (478)
+.++..+|. ||.++ +.+-.+|..|+..|+...+-|..+ .+=.+.-..||++|+.|. +++++.+++-+++
T Consensus 541 L~~a~~vlreeYi~~~--~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La------eR~e~a~d~Qe~L 612 (717)
T PF10168_consen 541 LSQATKVLREEYIEKQ--DLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA------ERYEEAKDKQEKL 612 (717)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q ss_pred hhhhhcc
Q 011731 157 RDKFRNT 163 (478)
Q Consensus 157 R~Ky~g~ 163 (478)
.+|...+
T Consensus 613 ~~R~~~v 619 (717)
T PF10168_consen 613 MKRVDRV 619 (717)
T ss_pred HHHHHHH
Done!