Query 011731
Match_columns 478
No_of_seqs 152 out of 427
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 14:11:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xgw_A Epsin 4; ENTH, enthopro 100.0 2.5E-57 8.4E-62 421.3 15.9 157 8-164 17-174 (176)
2 3onk_A Epsin-3, ENT3; helix, p 100.0 6.1E-57 2.1E-61 409.3 16.5 148 16-163 2-150 (150)
3 1eyh_A Epsin; superhelix of he 100.0 7.6E-54 2.6E-58 386.2 16.8 143 21-163 1-143 (144)
4 1inz_A EPS15-interacting porte 100.0 1.9E-53 6.3E-58 385.4 2.8 143 8-150 6-148 (148)
5 1vdy_A Hypothetical protein (R 100.0 4E-35 1.4E-39 263.9 10.8 118 26-145 12-133 (140)
6 3zym_A Phosphatidylinositol-bi 99.6 1.2E-15 4E-20 151.7 11.3 128 5-136 9-138 (310)
7 3zyl_A Phosphatidylinositol-bi 99.6 1.4E-15 4.9E-20 148.7 11.4 128 5-136 9-138 (271)
8 1hx8_A Synapse-enriched clathr 99.2 3.1E-11 1.1E-15 119.0 10.3 129 6-138 5-146 (299)
9 1x5b_A Signal transducing adap 98.1 1.6E-05 5.4E-10 72.4 10.7 110 22-141 12-124 (163)
10 1juq_A ADP-ribosylation factor 98.1 3.1E-05 1E-09 71.1 11.6 114 23-141 11-127 (171)
11 3ldz_A STAM-1, signal transduc 98.0 4.1E-05 1.4E-09 68.0 11.5 108 23-141 3-113 (140)
12 3rru_A TOM1L1 protein; structu 98.0 7E-05 2.4E-09 67.9 13.1 111 24-141 15-129 (152)
13 1elk_A Target of MYB1; superhe 98.0 7E-05 2.4E-09 67.6 12.7 111 24-142 15-130 (157)
14 3zyq_A Hepatocyte growth facto 98.0 4.5E-05 1.6E-09 72.4 11.8 126 23-158 6-138 (226)
15 1mhq_A ADP-ribosylation factor 97.9 0.00014 4.8E-09 65.3 12.6 111 26-141 2-115 (148)
16 3g2s_A C-terminal fragment of 97.8 0.00012 4.2E-09 66.0 11.5 114 23-141 9-125 (149)
17 1dvp_A HRS, hepatocyte growth 97.7 0.00013 4.6E-09 68.4 10.5 108 24-141 4-114 (220)
18 1sz9_A PCF11 protein; RNA poly 89.2 5.2 0.00018 35.5 12.1 103 42-155 23-137 (144)
19 3d9j_A RNA-binding protein 16; 84.1 10 0.00035 33.5 11.1 117 25-154 6-136 (145)
20 4flb_A Regulation of nuclear P 84.0 7.7 0.00026 33.0 9.9 97 42-152 20-127 (132)
21 2ijq_A Hypothetical protein; s 81.8 2 6.7E-05 39.4 5.6 84 54-146 46-134 (161)
22 3fga_B Serine/threonine-protei 76.6 6.1 0.00021 41.0 7.9 83 54-142 282-366 (403)
23 2km4_A Regulator of TY1 transp 66.8 47 0.0016 28.9 10.3 105 42-155 18-133 (142)
24 1deq_A Fibrinogen (alpha chain 65.6 28 0.00095 36.2 9.7 104 36-160 41-157 (390)
25 2npp_B PP2A, B subunit, serine 63.4 20 0.00068 37.6 8.4 82 54-142 315-399 (449)
26 3iot_A Maltose-binding protein 62.4 1.6 5.4E-05 43.3 0.0 30 4-34 19-51 (449)
27 2b4j_C PC4 and SFRS1 interacti 54.2 35 0.0012 29.1 6.9 70 58-138 7-77 (98)
28 2qk2_A LP04448P; mini spindles 50.7 23 0.0008 31.7 5.7 67 30-98 20-92 (242)
29 1deq_A Fibrinogen (alpha chain 49.2 59 0.002 33.8 8.9 25 60-84 91-115 (390)
30 1z9e_A PC4 and SFRS1 interacti 48.7 33 0.0011 30.6 6.1 67 58-138 7-77 (127)
31 3iot_A Maltose-binding protein 48.5 3.7 0.00013 40.6 0.0 17 130-146 273-290 (449)
32 2db0_A 253AA long hypothetical 47.6 21 0.00072 34.7 5.0 60 23-94 3-63 (253)
33 1t72_A Phosphate transport sys 45.9 1.1E+02 0.0036 27.4 9.2 85 2-90 6-94 (227)
34 1o5h_A Formiminotetrahydrofola 44.6 43 0.0015 31.8 6.7 61 76-138 124-193 (214)
35 4fu3_A Regulation of nuclear P 36.5 69 0.0023 27.0 6.1 97 45-152 22-128 (135)
36 2of3_A ZYG-9; multifunctional 35.2 60 0.0021 31.6 6.2 67 59-138 165-232 (266)
37 2awi_A PRGX; repressor, pherom 33.1 1.1E+02 0.0037 29.5 7.6 119 34-154 143-281 (317)
38 2qk1_A Protein STU2; STU2P, XM 32.8 1.9E+02 0.0064 26.7 9.0 71 59-140 144-218 (249)
39 2qk2_A LP04448P; mini spindles 32.1 1.9E+02 0.0064 25.7 8.5 15 59-73 96-110 (242)
40 3zed_D Capsid protein VP3; vir 31.8 1.1E+02 0.0038 29.7 7.2 47 57-105 9-56 (242)
41 3qhp_A Type 1 capsular polysac 30.2 52 0.0018 27.0 4.2 33 128-160 126-158 (166)
42 3ghg_A Fibrinogen alpha chain; 29.4 74 0.0025 34.4 6.1 36 36-73 38-76 (562)
43 3jui_A Translation initiation 28.8 1.1E+02 0.0036 27.9 6.4 16 127-142 158-173 (182)
44 3err_A Fusion protein of micro 28.3 1.6E+02 0.0054 31.3 8.5 53 41-93 72-127 (536)
45 1xwm_A PHOU, phosphate uptake 27.8 2.1E+02 0.0071 25.4 8.1 86 1-90 1-90 (217)
46 2jmf_B Neurogenic locus notch 26.2 31 0.001 22.8 1.6 17 283-299 7-23 (26)
47 2pk2_A Cyclin-T1, protein TAT; 25.3 34 0.0012 34.2 2.6 25 127-151 232-257 (358)
48 3ut4_A CTHE_2751, putative unc 24.9 2.8E+02 0.0097 24.6 8.2 93 30-140 36-128 (134)
49 1sum_B Phosphate transport sys 24.9 3.8E+02 0.013 24.1 10.4 86 1-90 1-90 (235)
50 3clj_A Protein NRD1; CTD-inter 24.4 3E+02 0.01 25.0 8.4 53 39-93 18-71 (157)
51 2rmh_A Urocortin-3; CRF ligand 24.4 29 0.00099 25.2 1.4 26 135-160 10-35 (38)
52 2rmg_A Urocortin-2; CRF ligand 24.1 32 0.0011 25.0 1.5 26 135-160 10-35 (38)
53 2d0t_A Indoleamine 2,3-dioxyge 23.5 98 0.0034 31.8 5.6 69 84-163 273-359 (406)
54 4hfx_A Transcription elongatio 23.0 45 0.0015 28.3 2.5 42 41-85 25-75 (97)
55 2k85_A Glucocorticoid receptor 22.2 1.1E+02 0.0039 24.6 4.6 46 66-111 19-68 (69)
56 4b8j_A Importin subunit alpha- 21.8 97 0.0033 30.7 5.1 32 63-96 416-447 (528)
57 2i0m_A Phosphate transport sys 21.3 4.2E+02 0.014 23.3 9.5 86 1-90 1-90 (216)
58 2cwy_A Hypothetical protein TT 20.9 1.8E+02 0.0061 23.9 5.7 75 54-140 15-92 (94)
59 3op0_A Signal transduction pro 20.4 88 0.003 31.8 4.4 86 78-163 9-120 (323)
60 3b2a_A TON_1937, putative unch 20.2 40 0.0014 33.4 1.8 15 128-142 247-261 (265)
61 3lay_A Zinc resistance-associa 20.1 1.6E+02 0.0053 27.2 5.7 35 127-165 113-147 (175)
62 1m1j_A Fibrinogen alpha subuni 20.0 2.6E+02 0.009 29.8 8.0 101 35-156 38-151 (491)
No 1
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=100.00 E-value=2.5e-57 Score=421.28 Aligned_cols=157 Identities=39% Similarity=0.809 Sum_probs=133.7
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHh-ccCCCCchhhhhHHHH
Q 011731 8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRI-NDTGKNWRHVYKALTV 86 (478)
Q Consensus 8 tvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL-~d~gKnWR~VyKALtL 86 (478)
.|+.++|+|+|+|++||++|++|+||||||+|||++++|+|||++||++.+|.+||++||||| ++++++||||||||+|
T Consensus 17 ~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~L 96 (176)
T 1xgw_A 17 KVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLL 96 (176)
T ss_dssp -----------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999995 7889999999999999
Q ss_pred HHHHHHhCCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhccc
Q 011731 87 LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTT 164 (478)
Q Consensus 87 LEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky~g~~ 164 (478)
|||||+||||+||+|+|+|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|++
T Consensus 97 LeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k~r~k~~G~~ 174 (176)
T 1xgw_A 97 LAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVS 174 (176)
T ss_dssp HHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC-----------
T ss_pred HHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999885
No 2
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=100.00 E-value=6.1e-57 Score=409.29 Aligned_cols=148 Identities=42% Similarity=0.747 Sum_probs=133.5
Q ss_pred HhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccC-CCCchhhhhHHHHHHHHHHhC
Q 011731 16 VNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDT-GKNWRHVYKALTVLEYLVAHG 94 (478)
Q Consensus 16 Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~-gKnWR~VyKALtLLEYLLkNG 94 (478)
+.|+|++||++|+||+||||||+|||++++|+|||++||++.+|.+||++|||||.++ +++||||||||+||||||+||
T Consensus 2 ~~n~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 2 LMSVDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ------CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999999999999999999999999999999986 689999999999999999999
Q ss_pred CHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhcc
Q 011731 95 SERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (478)
Q Consensus 95 SErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky~g~ 163 (478)
||+||+|+|+|+++|+.|++|+|+|++|+|||++||+||++|++||+|+++|++||++|+++|+||.|+
T Consensus 82 se~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~e~L~~eR~ka~~~~~k~~g~ 150 (150)
T 3onk_A 82 SERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDNKIRAERKKARETAKKYKGV 150 (150)
T ss_dssp CHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999885
No 3
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=100.00 E-value=7.6e-54 Score=386.24 Aligned_cols=143 Identities=49% Similarity=0.867 Sum_probs=140.5
Q ss_pred cCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHH
Q 011731 21 LKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (478)
Q Consensus 21 ln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVd 100 (478)
.+||++|++|++|||||+|||++++|++||++||++.+|.+||++|||||.+++++||||||||+||||||+||||+||+
T Consensus 1 ~~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhcc
Q 011731 101 DIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (478)
Q Consensus 101 dlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky~g~ 163 (478)
|+|+|++.|+.|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.+.
T Consensus 81 ~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D~~~L~~eR~~a~~~r~k~~~~ 143 (144)
T 1eyh_A 81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQT 143 (144)
T ss_dssp HHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999764
No 4
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=100.00 E-value=1.9e-53 Score=385.41 Aligned_cols=143 Identities=48% Similarity=0.864 Sum_probs=140.1
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHH
Q 011731 8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVL 87 (478)
Q Consensus 8 tvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLL 87 (478)
+++.|+|+|+|+|++||++|++|++|||||+|||++++|++||++||++.+|.+||++|||||.+++++||||||||+||
T Consensus 6 ~~~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~ll 85 (148)
T 1inz_A 6 STSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLM 85 (148)
T ss_dssp CCCCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHH
Q 011731 88 EYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVR 150 (478)
Q Consensus 88 EYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER 150 (478)
||||+||||+||+|+|+|++.|+.|++|+|+|++|+|+|++||+||++|++||+|+++|++||
T Consensus 86 eyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~e~L~~eR 148 (148)
T 1inz_A 86 EYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREER 148 (148)
T ss_dssp HHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSCCSCCCCC
T ss_pred HHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999987
No 5
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=100.00 E-value=4e-35 Score=263.86 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=111.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh--hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHH
Q 011731 26 IEQKVLDATSNEPWGPHGTLLADIAQATRNY--HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR 103 (478)
Q Consensus 26 ~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~--~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR 103 (478)
-+.||++||+||+|||++.+|.|||++||+. +.|.+||++|||||+++ .|+++||||+||+|||+||+++|+.|+|
T Consensus 12 ~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r 89 (140)
T 1vdy_A 12 RSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQ 89 (140)
T ss_dssp HHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHH
Confidence 3679999999999999999999999999996 56899999999999996 5889999999999999999999999999
Q ss_pred hhhhhhhcccceeeeCC--CCCccchhHHHHHHHHHHhhcCHHH
Q 011731 104 EHSYQISTLSDFQYIDS--SGRDQGSNVRKKSQSLVALVNDKER 145 (478)
Q Consensus 104 ~hi~~Ir~L~~FqyiD~--~GkD~G~nVReKAk~Il~LL~D~e~ 145 (478)
+|+++|++|++|+|+++ +|+|+|++||++|++|++||.|++.
T Consensus 90 ~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 90 RNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEEN 133 (140)
T ss_dssp HTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSS
T ss_pred HhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCC
Confidence 99999999999999976 8999999999999999999999864
No 6
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=99.62 E-value=1.2e-15 Score=151.72 Aligned_cols=128 Identities=23% Similarity=0.359 Sum_probs=110.1
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCCchhhhhH
Q 011731 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA 83 (478)
Q Consensus 5 f~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~-~y~~IM~vLwKRL~d~gKnWR~VyKA 83 (478)
.+|++.|=-..+|+.|.. +++|+.|+.||+++.|+|..+++.+|..+|++.. .+..||..|++||. .++|+++|||
T Consensus 9 ~~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~--~~~w~vv~Ka 85 (310)
T 3zym_A 9 SGQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKS 85 (310)
T ss_dssp ---CHHHHHHHHHHCCHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT--SSCHHHHHHH
T ss_pred ccccHHHHHHHHHhcccc-cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC--CCchHHHHHH
Confidence 467777777888888877 8999999999999999999999999999999876 47899999999998 3799999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHhhhhhhhcccceeeeCC-CCCccchhHHHHHHHH
Q 011731 84 LTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS-SGRDQGSNVRKKSQSL 136 (478)
Q Consensus 84 LtLLEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~-~GkD~G~nVReKAk~I 136 (478)
|+||.+||+.|++.|+.|++.|.. |-.|.+|..... .|.|++..||..|+-|
T Consensus 86 LivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL 138 (310)
T 3zym_A 86 LITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (310)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhCCC-eeecccccCCCCcCcccccHHHHHHHHHH
Confidence 999999999999999999998875 558888853322 4678889999999877
No 7
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=99.62 E-value=1.4e-15 Score=148.74 Aligned_cols=128 Identities=23% Similarity=0.352 Sum_probs=111.0
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCCchhhhhH
Q 011731 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA 83 (478)
Q Consensus 5 f~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~-~y~~IM~vLwKRL~d~gKnWR~VyKA 83 (478)
.+|++.|--..+|+.|.. +++|+.|+.||+++.|+|..+++.+|..+|++.. .+..||..|++||. .++|++++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~--~~~w~v~~Ka 85 (271)
T 3zyl_A 9 SGQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKS 85 (271)
T ss_dssp ---CHHHHHHHHHHHHHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT--SSCHHHHHHH
T ss_pred ccccHHHHHHHHHhcccc-hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC--CCchHHHHHH
Confidence 468888888889998887 8999999999999999999999999999999976 47999999999998 4799999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHhhhhhhhcccceeeeC-CCCCccchhHHHHHHHH
Q 011731 84 LTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYID-SSGRDQGSNVRKKSQSL 136 (478)
Q Consensus 84 LtLLEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD-~~GkD~G~nVReKAk~I 136 (478)
|+||.+||+.|++.|+.+++.|.. |-.|.+|.... ..|.|++.-||.-|+-|
T Consensus 86 LivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL 138 (271)
T 3zyl_A 86 LITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (271)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhCCC-eechhccCCCCCCCcccccHHHHHHHHHH
Confidence 999999999999999999988874 66888876432 24567888999999877
No 8
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=99.22 E-value=3.1e-11 Score=118.98 Aligned_cols=129 Identities=23% Similarity=0.322 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCCchhhhhHH
Q 011731 6 DQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKAL 84 (478)
Q Consensus 6 ~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~-~y~~IM~vLwKRL~d~gKnWR~VyKAL 84 (478)
.|++++.-..||+-. .-+++|+.|+.||+.|.|+|..+++.+|..+|++.. ....|+..|++|+. .++|.+++|||
T Consensus 5 ~~~~~~~~~a~k~~~-~~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~--~~~w~va~K~L 81 (299)
T 1hx8_A 5 GQTINDRLLAARHSL-AGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQ--NANWVVVYKSL 81 (299)
T ss_dssp ------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHT--CSSHHHHHHHH
T ss_pred hHHHHHHHHHHhhcc-chhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhcc--CCcHHHHHHHH
Confidence 455555555555322 236899999999999999999999999999999874 46789999999964 44999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHhhhhhhhcccceeeeC------------CCCCccchhHHHHHHHHHH
Q 011731 85 TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYID------------SSGRDQGSNVRKKSQSLVA 138 (478)
Q Consensus 85 tLLEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD------------~~GkD~G~nVReKAk~Il~ 138 (478)
+||.+||+.|++.|+.++..+. .|-.|..|.=.. ..|.|++..||.-|+-|.+
T Consensus 82 ivlH~llreG~~~~~~~l~~~~-~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~ 146 (299)
T 1hx8_A 82 ITTHHLMAYGNERFMQYLASSN-STFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNE 146 (299)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTT-CCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhCC-cccchhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 9999999999999999997653 345556662110 1234788899999976543
No 9
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=98.11 E-value=1.6e-05 Score=72.45 Aligned_cols=110 Identities=20% Similarity=0.161 Sum_probs=78.3
Q ss_pred CCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHH
Q 011731 22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (478)
Q Consensus 22 n~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn-~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVd 100 (478)
.-++.+.+|.+||+...-.+.-.+..+|++.-.. ...-++.+..|.|||... +-...+-||+|||.|++||-.+|-.
T Consensus 12 ~~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~--n~~vql~AL~LLd~~vkNcG~~Fh~ 89 (163)
T 1x5b_A 12 TANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHK--VPHVALQALTLLGACVANCGKIFHL 89 (163)
T ss_dssp CCCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3468899999999966666666777788877533 346789999999999864 4567778999999999999888876
Q ss_pred HHHh--hhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 101 DIRE--HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 101 dlR~--hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
++-. -+..|..|-. . + ....||+|+.+|++...
T Consensus 90 evas~~Fl~el~~l~~-----~--~-~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 90 EVCSRDFATEVRAVIK-----N--K-AHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHTSHHHHHHHHHHHH-----T--T-CCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHc-----c--C-CCHHHHHHHHHHHHHHH
Confidence 6632 2333322221 1 1 12479999999887654
No 10
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=98.05 E-value=3.1e-05 Score=71.15 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=82.8
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHH
Q 011731 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (478)
Q Consensus 23 ~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn-~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVdd 101 (478)
.++++..|.+||+...-.+.-.+..+|++.-.. ...-++.+..|.|||... +-...+-||+|||.|++||..+|-.+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~--n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSP--QEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 478899999999966556666777888887533 356788999999999854 77888999999999999999888877
Q ss_pred HHhh--hhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 102 IREH--SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 102 lR~h--i~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
+-.. +..|..|-.=+|. |...-..||+|+.+|++-..
T Consensus 89 vas~~Fl~eL~kl~~~k~~---~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 89 VGKFRFLNELIKVVSPKYL---GDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HTSHHHHHHHHHHHCCCCC---CTTSCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhccccC---CCCCCHHHHHHHHHHHHHHH
Confidence 7432 3333333211121 23345799999999987654
No 11
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=98.03 E-value=4.1e-05 Score=67.99 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=79.8
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHH
Q 011731 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (478)
Q Consensus 23 ~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVdd 101 (478)
-++.+.+|.+||+...-.+.-.+..+|++.-... ..-.+.|..|.|||... +-...+-||+|||.|++||-.+|-.+
T Consensus 3 ~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 3 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK--DPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4688999999999766666667788888886543 45789999999999764 66789999999999999998887766
Q ss_pred H--HhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 102 I--REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 102 l--R~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
+ ++-+..|..|-. . .-..||+|+..|+.-..
T Consensus 81 vas~~Fl~el~~l~~-~--------~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 81 VCSRDFASEVSNVLN-K--------GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HSSHHHHHHHHHHHH-H--------SCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhc-c--------CCHHHHHHHHHHHHHHH
Confidence 6 444443332221 0 12489999988886543
No 12
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=98.02 E-value=7e-05 Score=67.88 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=79.8
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHHHHHHhc-ChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHH
Q 011731 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATR-NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (478)
Q Consensus 24 S~~E~kVrEATSNDpWGPtgtlL~EIAqaTy-n~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddl 102 (478)
|+++..|.+||+..--.+.-.+.-||++.-. +...-++.|..|.|||. .+++.+.++-||+|||-|++||-.+|-.++
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~-~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRIS-KNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHT-TCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7899999999996554555557778887743 33567899999999997 445777778899999999999999999888
Q ss_pred H--hhhhh-hhcccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 103 R--EHSYQ-ISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 103 R--~hi~~-Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
- +-+.. |..|-.=.+ ..-..||+|+.+|+.-..
T Consensus 94 ask~Fl~e~L~kl~~~~~------~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 94 VKKEFVKENLVKLLNPRY------NLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp SSHHHHTTTTGGGGSGGG------CCCHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHHhcCCC------CCcHHHHHHHHHHHHHHH
Confidence 4 33321 222211001 123479999988887654
No 13
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=98.00 E-value=7e-05 Score=67.64 Aligned_cols=111 Identities=22% Similarity=0.189 Sum_probs=80.8
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHH
Q 011731 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (478)
Q Consensus 24 S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn-~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddl 102 (478)
++++.+|.+||+...-.+.-.+..+|++.-.. ...-++.+..|.|||+. .++...++-||+|||.|++||-.+|-.++
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~-~~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVG-NKNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 48899999999966666666777788887533 35678999999999974 35778889999999999999998887776
Q ss_pred Hh--hhhh--hhcccceeeeCCCCCccchhHHHHHHHHHHhhcC
Q 011731 103 RE--HSYQ--ISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVND 142 (478)
Q Consensus 103 R~--hi~~--Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D 142 (478)
-+ -+.. ++.+. .+. +.-..||+|+.+|++-..+
T Consensus 94 a~~~fl~e~Lvk~~~------~k~-~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 94 ASQDFVESVLVRTIL------PKN-NPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp TSHHHHHHHTHHHHS------TTT-CCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc------cCC-CCcHHHHHHHHHHHHHHHH
Confidence 43 2332 22221 111 1235899999888876654
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=97.99 E-value=4.5e-05 Score=72.40 Aligned_cols=126 Identities=21% Similarity=0.195 Sum_probs=88.4
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHH
Q 011731 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (478)
Q Consensus 23 ~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVdd 101 (478)
-++.|..|.+||+...-.+.-.+..+|++.-... ..-++.|..|.|||+. ++-..++-||+|||.|++|+-.+|-.+
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 3788999999999777677777888888886543 3468999999999984 577799999999999999988887777
Q ss_pred HH--hhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhc----CHHHHHHHHHHHHHHhh
Q 011731 102 IR--EHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN----DKERIIEVRQKAAANRD 158 (478)
Q Consensus 102 lR--~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~----D~e~LreER~KAkknR~ 158 (478)
+- +-+..|..|-. ......||+|+.+|+.-.. ++..|...++--+.+|.
T Consensus 84 ias~~fl~~l~~l~~--------~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~ 138 (226)
T 3zyq_A 84 VANKQTMEELKDLLK--------RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKV 138 (226)
T ss_dssp HSSHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Confidence 62 33333333221 1123689999999887543 33344444444444443
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=97.89 E-value=0.00014 Score=65.33 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHH-
Q 011731 26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR- 103 (478)
Q Consensus 26 ~E~kVrEATSNDpWGPtgtlL~EIAqaTyn-~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR- 103 (478)
.+..|.+||+...-.+.-.+..+|++.-.. ...-.+.|..|.|||.. ++-...+-||+|||.|++||-.+|-.++-
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~evas 79 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS--PQEKEALYALTVLEMCMNHCGEKFHSEVAK 79 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 578899999965556666677788887433 35678999999999974 47888999999999999999999887773
Q ss_pred -hhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 104 -EHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 104 -~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
+-+..|..|-.=+| .|......||+|+.+|+.-..
T Consensus 80 ~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 80 FRFLNELIKVLSPKY---LGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTTCCST---TSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccc---CCCCCCHHHHHHHHHHHHHHH
Confidence 33333332211111 133345699999988887654
No 16
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=97.84 E-value=0.00012 Score=65.98 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=84.0
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHH
Q 011731 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (478)
Q Consensus 23 ~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVdd 101 (478)
-++++..|.+||+...-.+.-.+..+|++.-... ..-++.|..|.|||.. ++-+..+-||+|||.|++||-.+|-.+
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~--~n~~v~l~AL~LLe~cvkNCG~~fh~e 86 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS--PQEWEAIQALTVLETCMKSCGKRFHDE 86 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4788999999999776677777889999986443 4578899999999984 588899999999999999999998777
Q ss_pred HH--hhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 102 IR--EHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 102 lR--~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
+- +-+..|..|-.=+| .|...-..||+|+.+|+.-..
T Consensus 87 ias~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 87 VGKFRFLNELIKVVSPKY---LGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HTSHHHHHHHHHHHCTTT---TGGGSCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHcccc---cCCCCCHHHHHHHHHHHHHHH
Confidence 63 32333322211011 122334689999999887654
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=97.75 E-value=0.00013 Score=68.44 Aligned_cols=108 Identities=20% Similarity=0.159 Sum_probs=78.2
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHH
Q 011731 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (478)
Q Consensus 24 S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~-~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddl 102 (478)
+.++..|.+||+...-.+.-.++.||++.-... ..-++.|..|.|||.. ++-...+-||+|||.|++|+-..|-.++
T Consensus 4 ~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~--~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 4 SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 568999999999665566667788888886443 3568999999999986 4778999999999999999887776665
Q ss_pred Hh--hhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhc
Q 011731 103 RE--HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (478)
Q Consensus 103 R~--hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~ 141 (478)
-. -+..|..|- .+ ..-..||+|+.+|++...
T Consensus 82 a~~~fl~~l~~l~----~~----~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 82 FTKENCEMFSSFL----ES----TPHENVRQKMLELVQTWA 114 (220)
T ss_dssp SSHHHHHHHHHHH----HH----CSCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHh----cC----CCcHHHHHHHHHHHHHHH
Confidence 32 222222221 01 123689999888876654
No 18
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=89.25 E-value=5.2 Score=35.47 Aligned_cols=103 Identities=12% Similarity=0.150 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhhhhhhhccc-ceeeeC
Q 011731 42 HGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLS-DFQYID 119 (478)
Q Consensus 42 tgtlL~EIAqaT-yn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~hi~~Ir~L~-~FqyiD 119 (478)
+...++.|..++ .|.+....|+++|.++|... .-.+.+=.|-||+-+|+|....++..|-.++..+ +. -|..+|
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~--~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~--f~~~~~~~d 98 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKC--MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNL--YKRTYLLVD 98 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHH--HHHHHHTSC
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHH--HHHHHHhCC
Confidence 444444444443 46778999999999999754 3567788999999999997777877777665543 11 122222
Q ss_pred CCCCccchhHHHHHHHHHHhhcC----------HHHHHHHHHHHHH
Q 011731 120 SSGRDQGSNVRKKSQSLVALVND----------KERIIEVRQKAAA 155 (478)
Q Consensus 120 ~~GkD~G~nVReKAk~Il~LL~D----------~e~LreER~KAkk 155 (478)
..+|.|..+|+.+=.. ++.|+.-|....+
T Consensus 99 -------~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~ 137 (144)
T 1sz9_A 99 -------NTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIK 137 (144)
T ss_dssp -------HHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHh
Confidence 5899999999987654 4888777765443
No 19
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=84.11 E-value=10 Score=33.47 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=81.1
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCH-------
Q 011731 25 GIEQKVLDATSNEPWGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSE------- 96 (478)
Q Consensus 25 ~~E~kVrEATSNDpWGPtgtlL~EIAqaT-yn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSE------- 96 (478)
+.|.++.+-+...+ +-+...++.|..++ .+...+..|+.+|.++|.... -++.+=.|-|++=+++|.-.
T Consensus 6 ~f~~~L~~L~~~k~-~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~--~~~KL~~LYL~DsIvrn~~~k~~~~~~ 82 (145)
T 3d9j_A 6 TFNSELYSLNDYKP-PISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCK--PEYKVPGLYVIDSIVRQSRHQFGQEKD 82 (145)
T ss_dssp HHHHHHHGGGGSCS-SCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ccceeehhhhhHHHHHHhhhhcCCccc
Confidence 44555555555442 26777777777765 667789999999999997753 45778899999999999665
Q ss_pred HHHHHHHhhhhh-hhcccceeeeCCCCCccchhHHHHHHHHHHh-----hcCHHHHHHHHHHHH
Q 011731 97 RVIDDIREHSYQ-ISTLSDFQYIDSSGRDQGSNVRKKSQSLVAL-----VNDKERIIEVRQKAA 154 (478)
Q Consensus 97 rvVddlR~hi~~-Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~L-----L~D~e~LreER~KAk 154 (478)
.++..|-.++.. +.. -|. ....+|+|.++|+++ +..++.|++-|....
T Consensus 83 ~f~~~F~~~L~~~f~~--~~~--------~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~ 136 (145)
T 3d9j_A 83 VFAPRFSNNIISTFQN--LYR--------CPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA 136 (145)
T ss_dssp SHHHHHHHHHHHHHHH--HTS--------SCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH--HHh--------CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 566666544433 221 121 125889999999987 457888888877654
No 20
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=83.97 E-value=7.7 Score=33.02 Aligned_cols=97 Identities=10% Similarity=0.106 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCC----HHHHHHHHhhhhhhhccccee
Q 011731 42 HGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS----ERVIDDIREHSYQISTLSDFQ 116 (478)
Q Consensus 42 tgtlL~EIAqaT-yn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGS----ErvVddlR~hi~~Ir~L~~Fq 116 (478)
+-.-...++.+. ++.+.+..|+++|.++|..... .+-+-.|-|++-+|+|.. ..++..|...+..+ |.
T Consensus 20 s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~--~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~-----~~ 92 (132)
T 4flb_A 20 TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAY--PHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEA-----AA 92 (132)
T ss_dssp SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHH-----HH
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCh--hhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH-----HH
Confidence 444455566664 5677889999999999987543 456788999999999963 34555555544332 22
Q ss_pred ee-CCCCCccchhHHHHHHHHHHhh-----cCHHHHHHHHHH
Q 011731 117 YI-DSSGRDQGSNVRKKSQSLVALV-----NDKERIIEVRQK 152 (478)
Q Consensus 117 yi-D~~GkD~G~nVReKAk~Il~LL-----~D~e~LreER~K 152 (478)
.+ ++ .+|+|..+|+++- -+++.|++-|+.
T Consensus 93 ~~~~~-------~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~ 127 (132)
T 4flb_A 93 LVKDP-------SVSKSVERIFKIWEDRNVYPEEMIVALREA 127 (132)
T ss_dssp TTCST-------TTHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HhCCH-------HHHHHHHHHHHHhccCCCcCHHHHHHHHHH
Confidence 22 22 4678888888875 457777776654
No 21
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=81.84 E-value=2 Score=39.44 Aligned_cols=84 Identities=7% Similarity=0.102 Sum_probs=55.1
Q ss_pred cChhhHHHHHHHHHHHhccCCCCchhhhhHHHH----HHHHHHhCCHH-HHHHHHhhhhhhhcccceeeeCCCCCccchh
Q 011731 54 RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV----LEYLVAHGSER-VIDDIREHSYQISTLSDFQYIDSSGRDQGSN 128 (478)
Q Consensus 54 yn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtL----LEYLLkNGSEr-vVddlR~hi~~Ir~L~~FqyiD~~GkD~G~n 128 (478)
-.+-+|.+|++-+||.......+ |.+|++|+. --|-+.+|..+ .+.-++.-+..|+.+.. ...|+.
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~e-r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~--------~~~GID 116 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTE-SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN--------DYYGVD 116 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT--------TGGGBC
T ss_pred CCchHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC--------ccCCcC
Confidence 34567789999999998654333 777777776 34556778765 44444444444544332 346777
Q ss_pred HHHHHHHHHHhhcCHHHH
Q 011731 129 VRKKSQSLVALVNDKERI 146 (478)
Q Consensus 129 VReKAk~Il~LL~D~e~L 146 (478)
|......|-++|.|++.+
T Consensus 117 v~~L~~~~~~~l~dp~~~ 134 (161)
T 2ijq_A 117 LLDVRTTVTNALSDPSAL 134 (161)
T ss_dssp HHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHhhCCccC
Confidence 888777788888877654
No 22
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=76.56 E-value=6.1 Score=40.99 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=56.7
Q ss_pred cChhhHHHHHHHHHHHhcc--CCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHH
Q 011731 54 RNYHEYQMIIGVIWKRIND--TGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRK 131 (478)
Q Consensus 54 yn~~~y~~IM~vLwKRL~d--~gKnWR~VyKALtLLEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVRe 131 (478)
-+..+|+.||..|.+||.. ...+....-.||.+. ..+.++.-+.+|...|-.+---....-.-..|...||.
T Consensus 282 ~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w------nNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~ 355 (403)
T 3fga_B 282 IEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW------NNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 355 (403)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG------GCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh------ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4678899999999999874 445788888888765 34666666666665543332100000113468999999
Q ss_pred HHHHHHHhhcC
Q 011731 132 KSQSLVALVND 142 (478)
Q Consensus 132 KAk~Il~LL~D 142 (478)
.|..++.+|.|
T Consensus 356 l~~~vlk~l~e 366 (403)
T 3fga_B 356 LIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999954
No 23
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=66.85 E-value=47 Score=28.91 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCC----HHHHHHHHhhhhhh-hcccce
Q 011731 42 HGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS----ERVIDDIREHSYQI-STLSDF 115 (478)
Q Consensus 42 tgtlL~EIAqaT-yn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGS----ErvVddlR~hi~~I-r~L~~F 115 (478)
+-.-++.++.+. ++......|++++.+.|......-++.+--|-|+.-+|.|+. ..++..|...+..+ ..+ |
T Consensus 18 sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~--~ 95 (142)
T 2km4_A 18 SQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRI--N 95 (142)
T ss_dssp CHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHH--H
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHH--H
Confidence 455566677776 556788999999999998764455566667777777776643 34777776655332 222 1
Q ss_pred eeeCCCCCccchhHHHHHHHHHHhh-----cCHHHHHHHHHHHHH
Q 011731 116 QYIDSSGRDQGSNVRKKSQSLVALV-----NDKERIIEVRQKAAA 155 (478)
Q Consensus 116 qyiD~~GkD~G~nVReKAk~Il~LL-----~D~e~LreER~KAkk 155 (478)
... ...+|+|..+|+++- -+++.|.+-|.....
T Consensus 96 ~~~-------~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~ 133 (142)
T 2km4_A 96 QEF-------PRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAA 133 (142)
T ss_dssp HHS-------CHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcC-------CHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHh
Confidence 112 257899999999985 456777666655443
No 24
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.60 E-value=28 Score=36.17 Aligned_cols=104 Identities=12% Similarity=0.209 Sum_probs=56.6
Q ss_pred CCCCCC---CHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHh------CCHH----HHHHH
Q 011731 36 NEPWGP---HGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH------GSER----VIDDI 102 (478)
Q Consensus 36 NDpWGP---tgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkN------GSEr----vVddl 102 (478)
++.||. ++=.|+.+..-+- .++..-|+.|..+|.+-.++-..++--.+.|.-+|+. ..+. +-++|
T Consensus 41 DeDwG~kCPsGCrLqg~Ldk~e--r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eL 118 (390)
T 1deq_A 41 DEDWNTKCPSGCRMKGLIDEVD--QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDL 118 (390)
T ss_pred hhhccCCCCccchHHHHHHHhh--hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 556765 5555555443332 4566677777777776544455555444444444332 3333 44556
Q ss_pred HhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
Q 011731 103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (478)
Q Consensus 103 R~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky 160 (478)
+.|+..|+ ..|+....+| .+|. ..|++.|.|.+++--++
T Consensus 119 e~~i~~lk----------------~~V~~q~~~i-r~Lq--~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 119 RSRIEILR----------------RKVIEQVQRI-NLLQ--KNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHH----------------HHHHHHhHHH-HHHH--HHHHHHHHHHHHHHHHH
Confidence 66655554 2555555533 3332 55677777777766655
No 25
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=63.41 E-value=20 Score=37.62 Aligned_cols=82 Identities=12% Similarity=0.210 Sum_probs=54.0
Q ss_pred cChhhHHHHHHHHHHHhcc--CCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhhhhhhhcccceeeeCC-CCCccchhHH
Q 011731 54 RNYHEYQMIIGVIWKRIND--TGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS-SGRDQGSNVR 130 (478)
Q Consensus 54 yn~~~y~~IM~vLwKRL~d--~gKnWR~VyKALtLLEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~-~GkD~G~nVR 130 (478)
-...+|..||.-|.+||.. ...+....-.||.++. .+.++..+.+|...|-.+- |..... .-..|...||
T Consensus 315 ~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~------N~~i~~li~~n~~~IlPii-~p~L~~~s~~HWn~~V~ 387 (449)
T 2npp_B 315 IEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN------NEYIMSLISDNAAKILPIM-FPSLYRNSKTHWNKTIH 387 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG------CHHHHHHHHTTHHHHHHHH-HHHHTSCTTCCSSTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHC------CHHHHHHHHhchhhhHHhh-HHHHHHHHHHhcCHHHH
Confidence 4678899999999999875 4467888888886652 3445555555554432211 110101 1346889999
Q ss_pred HHHHHHHHhhcC
Q 011731 131 KKSQSLVALVND 142 (478)
Q Consensus 131 eKAk~Il~LL~D 142 (478)
..|..++.+|.|
T Consensus 388 ~la~~vlk~l~e 399 (449)
T 2npp_B 388 GLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999999865
No 26
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=62.38 E-value=1.6 Score=43.28 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHhhh---ccCCchHHHHHHHHh
Q 011731 4 AFDQTFRDIKRGVNKK---VLKVPGIEQKVLDAT 34 (478)
Q Consensus 4 vf~qtvrdlkr~Vkn~---Vln~S~~E~kVrEAT 34 (478)
+++..+.++.++ .++ +..+...+.++..+.
T Consensus 19 ~~~~~~~~F~~~-~gi~V~~~~~~~~~~kl~~~~ 51 (449)
T 3iot_A 19 GLAEVGKKFEKD-TGIKVTVEHPDKLEEKFPQVA 51 (449)
T ss_dssp HHHHHHHHHHHH-HSCCEEEECCTTHHHHHHHHG
T ss_pred HHHHHHHHHhhc-cCCEEEEEecHHHHHHHHHHh
Confidence 344555555544 232 222345555555443
No 27
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=54.18 E-value=35 Score=29.11 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHh-CCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHH
Q 011731 58 EYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH-GSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSL 136 (478)
Q Consensus 58 ~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkN-GSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~I 136 (478)
.+.++-..|...|.-.+ -.|.|||.+||-|-.= .......---+.++.|+.|++|. | .+.||+||..|
T Consensus 7 ~l~~L~~~ik~~L~~~~---~Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~-----g---~q~Ir~kA~~i 75 (98)
T 2b4j_C 7 RLQRIHAEIKNSLKIDN---LDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFK-----V---SQVIMEKSTML 75 (98)
T ss_dssp HHHHHHHHHHHHTCTTS---CCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCT-----T---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC---CCHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHh-----c---hHHHHHHHHHH
Confidence 45666677777776432 2477888888877543 22222111112234566677774 2 16777777777
Q ss_pred HH
Q 011731 137 VA 138 (478)
Q Consensus 137 l~ 138 (478)
..
T Consensus 76 Y~ 77 (98)
T 2b4j_C 76 YN 77 (98)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 28
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=50.66 E-value=23 Score=31.69 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=45.2
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhc-----ChhhHHHHHHHHHHHhc-cCCCCchhhhhHHHHHHHHHHhCCHHH
Q 011731 30 VLDATSNEPWGPHGTLLADIAQATR-----NYHEYQMIIGVIWKRIN-DTGKNWRHVYKALTVLEYLVAHGSERV 98 (478)
Q Consensus 30 VrEATSNDpWGPtgtlL~EIAqaTy-----n~~~y~~IM~vLwKRL~-d~gKnWR~VyKALtLLEYLLkNGSErv 98 (478)
+.+..++..|----.-+..|..+.. ...+|.+|+..|.++|. +. +......+|..|..|++.....|
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhhhH
Confidence 4455566777554444445544422 13457899999999995 64 78888899999999997654433
No 29
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=49.23 E-value=59 Score=33.79 Aligned_cols=25 Identities=8% Similarity=0.059 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhccCCCCchhhhhHH
Q 011731 60 QMIIGVIWKRINDTGKNWRHVYKAL 84 (478)
Q Consensus 60 ~~IM~vLwKRL~d~gKnWR~VyKAL 84 (478)
..|+++|.+++.....+=..+..-+
T Consensus 91 ~~~~~~lk~~~~q~~dndn~~~e~s 115 (390)
T 1deq_A 91 KNIVELMRGDFAKANNNDNTFKQIN 115 (390)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHH
Confidence 4556666666655443333333333
No 30
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=48.65 E-value=33 Score=30.56 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHh-CCHHHHHHHHhhh---hhhhcccceeeeCCCCCccchhHHHHH
Q 011731 58 EYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH-GSERVIDDIREHS---YQISTLSDFQYIDSSGRDQGSNVRKKS 133 (478)
Q Consensus 58 ~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkN-GSErvVddlR~hi---~~Ir~L~~FqyiD~~GkD~G~nVReKA 133 (478)
.+.+|-..|...|.-.+ -.|.|||.+|+-|-.= ..... ++.|- +.|+.|++|.- - +.||++|
T Consensus 7 ~L~~L~~~Ik~~L~v~~---~Dv~kCl~~Leel~~l~vT~~m---L~Rnpe~V~TlkklRrY~g-----n---q~Ir~kA 72 (127)
T 1z9e_A 7 RLQRIHAEIKNSLKIDN---LDVNRCIEALDELASLQVTMQQ---AQKHTEMITTLKKIRRFKV-----S---QVIMEKS 72 (127)
T ss_dssp HHHHHHHHHHHHTCGGG---CCHHHHHHHHHHHHHSCCCHHH---HGGGHHHHHHHHHHTTCTT-----C---SSHHHHH
T ss_pred HHHHHHHHHHHHHccCC---CCHHHHHHHHHHHccccccHHH---HhhChHHHHHHHHHHHHhc-----c---HHHHHHH
Confidence 45666777777776432 2478888888877543 22222 34443 45666666642 1 6899999
Q ss_pred HHHHH
Q 011731 134 QSLVA 138 (478)
Q Consensus 134 k~Il~ 138 (478)
..|..
T Consensus 73 ~~iY~ 77 (127)
T 1z9e_A 73 TMLYN 77 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 31
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=48.49 E-value=3.7 Score=40.64 Aligned_cols=17 Identities=6% Similarity=0.259 Sum_probs=10.2
Q ss_pred HHHHHHHHH-hhcCHHHH
Q 011731 130 RKKSQSLVA-LVNDKERI 146 (478)
Q Consensus 130 ReKAk~Il~-LL~D~e~L 146 (478)
.+.|.++|+ +|..++..
T Consensus 273 ~e~A~~fl~~~l~s~e~~ 290 (449)
T 3iot_A 273 KELAKEFLENYLLTDEGL 290 (449)
T ss_dssp HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHHhcCHHHH
Confidence 456666674 66666543
No 32
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=47.63 E-value=21 Score=34.69 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=41.6
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHH-HHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhC
Q 011731 23 VPGIEQKVLDATSNEPWGPHGTLLAD-IAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHG 94 (478)
Q Consensus 23 ~S~~E~kVrEATSNDpWGPtgtlL~E-IAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNG 94 (478)
+.+-|..||||.-+ |.++++ |++++|+ .+|++.|.+-|.+. -|...-.+|.||--+.+-=
T Consensus 3 me~~e~d~realat------ge~~~eii~~a~~d----~~~l~~lI~~LDDD--lwtV~kNAl~vi~~i~~~~ 63 (253)
T 2db0_A 3 MEEEEFDIREALAN------GEHLEKILIMAKYD----ESVLKKLIELLDDD--LWTVVKNAISIIMVIAKTR 63 (253)
T ss_dssp ------CHHHHHHT------TCSHHHHHHHHHHC----HHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTC
T ss_pred chHhhhhHHHHHhh------hhhHHHHHHHHHhh----HHHHHHHHHHhccH--HHHHHHhHHHHHHHHHHHh
Confidence 44568889999864 456776 5788999 46777777778776 7999999999987765543
No 33
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=45.86 E-value=1.1e+02 Score=27.43 Aligned_cols=85 Identities=13% Similarity=0.048 Sum_probs=48.5
Q ss_pred hhhhhhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhh-HHHHHHHHHHHhccC---CCCc
Q 011731 2 KKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHE-YQMIIGVIWKRINDT---GKNW 77 (478)
Q Consensus 2 kkvf~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~-y~~IM~vLwKRL~d~---gKnW 77 (478)
.+.|++.+..+++.+..+...+..+=.++.+|..+.. ..+..+|.+.--..+. +..|...+.+.|... .+..
T Consensus 6 ~~~~~~~l~~~~~~l~~M~~~v~~~l~~a~~al~~~d----~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~ 81 (227)
T 1t72_A 6 GMKLFKELEETKEQVIKMAKLVQEAIDKATEALNKQN----VELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDL 81 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 4678888888888877765433233333445554433 3456666655444443 567777777766431 2344
Q ss_pred hhhhhHHHHHHHH
Q 011731 78 RHVYKALTVLEYL 90 (478)
Q Consensus 78 R~VyKALtLLEYL 90 (478)
|.+.-.|.++.+|
T Consensus 82 ~~~~~~l~i~~~l 94 (227)
T 1t72_A 82 RMIMGIYKIVSDL 94 (227)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555555
No 34
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=44.56 E-value=43 Score=31.83 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=41.1
Q ss_pred CchhhhhHHHHHHHHHHhCCHHHHHHHHhhhhhhhccc---------ceeeeCCCCCccchhHHHHHHHHHH
Q 011731 76 NWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLS---------DFQYIDSSGRDQGSNVRKKSQSLVA 138 (478)
Q Consensus 76 nWR~VyKALtLLEYLLkNGSErvVddlR~hi~~Ir~L~---------~FqyiD~~GkD~G~nVReKAk~Il~ 138 (478)
--+.+++.|.|++.|+.+|+..+|.|+.--...++.-- +...+ +..+.-..+++++.+|++
T Consensus 124 ia~~~~~~l~l~~~la~~GN~~aiSD~gvaa~l~~aAi~gA~lNV~INL~~i--kDe~~~~~~~~e~~~l~~ 193 (214)
T 1o5h_A 124 VIRVMKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLKEI--SDETFRKNMLEELEEQEA 193 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccC--CCHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999988875544433111 12222 123345578888888777
No 35
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=36.48 E-value=69 Score=27.01 Aligned_cols=97 Identities=10% Similarity=0.115 Sum_probs=62.0
Q ss_pred HHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCC---HHHHHHHHhhhhhh-hcccceeeeC
Q 011731 45 LLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS---ERVIDDIREHSYQI-STLSDFQYID 119 (478)
Q Consensus 45 lL~EIAqaT-yn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGS---ErvVddlR~hi~~I-r~L~~FqyiD 119 (478)
-+..++.+. ++......|+++|.++|.....+ +-+-.|-|++-+|+|.. ..++..|..++..| ..+ |.-.+
T Consensus 22 sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~--~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~--~~~~~ 97 (135)
T 4fu3_A 22 SVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSN--RKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHV--AREAD 97 (135)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTT--THHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HHcCC
Confidence 344555554 55677899999999999875443 55678899999988853 34666666554432 111 11112
Q ss_pred CCCCccchhHHHHHHHHHHhh-----cCHHHHHHHHHH
Q 011731 120 SSGRDQGSNVRKKSQSLVALV-----NDKERIIEVRQK 152 (478)
Q Consensus 120 ~~GkD~G~nVReKAk~Il~LL-----~D~e~LreER~K 152 (478)
..+|+|..+|+++- -+++.|++-|..
T Consensus 98 -------~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~ 128 (135)
T 4fu3_A 98 -------EGCKKPLERLLNIWQERSVYGGEFIQQLKLS 128 (135)
T ss_dssp -------TTSSHHHHHHHHHHHHTTSSCHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence 24677888888875 457777665543
No 36
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=35.21 E-value=60 Score=31.56 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHH-hCCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHH
Q 011731 59 YQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVA-HGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLV 137 (478)
Q Consensus 59 y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLk-NGSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il 137 (478)
...|+..|.+-| +.||||..--||.+|.+|+. +|... ...+.+-..+... + .|...+||+.|.+.+
T Consensus 165 ~~~v~~~l~~g~--ksKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~l--l----~D~d~~VR~aAl~~l 231 (266)
T 2of3_A 165 PLKMTPMLLDAL--KSKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPF--V----GDKDVNVRNAAINVL 231 (266)
T ss_dssp HHHHHHHHHHGG--GCSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGG--G----GCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHH--H----cCCCHHHHHHHHHHH
Confidence 355666666655 55799999999999999985 47761 1111000222211 1 134568898886655
Q ss_pred H
Q 011731 138 A 138 (478)
Q Consensus 138 ~ 138 (478)
.
T Consensus 232 v 232 (266)
T 2of3_A 232 V 232 (266)
T ss_dssp H
T ss_pred H
Confidence 4
No 37
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=33.09 E-value=1.1e+02 Score=29.47 Aligned_cols=119 Identities=8% Similarity=0.090 Sum_probs=61.8
Q ss_pred hcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchh--hhhHHHHHHHHHHhCCHHHHHHHHhhhhhhhc
Q 011731 34 TSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRH--VYKALTVLEYLVAHGSERVIDDIREHSYQIST 111 (478)
Q Consensus 34 TSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~--VyKALtLLEYLLkNGSErvVddlR~hi~~Ir~ 111 (478)
.+-+.|+-..=.+--.+..-++.+.+..|+..|.+++......-.. ....+.++.+|+.++...-+..+-..+..|..
T Consensus 143 ~~~~~w~~~eL~Lf~n~~~~~~~e~~~~l~~~il~~~~~~~~~~~~~~~~~llN~l~~~i~~~~~~~a~~~l~~l~~l~~ 222 (317)
T 2awi_A 143 DKRTTFFGIDCEIVSNLLNVLPYEEVSSIIKPMYPIVDSFGKDYDLTIQTVLKNALTISIMNRNLKEAQYYINQFEHLKT 222 (317)
T ss_dssp SSCSSCCHHHHHHHHHHTTTSCHHHHHHHHGGGCSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred hChhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Confidence 4468896443333233333466767777776666665543211111 11245677788888887655555555444433
Q ss_pred ccce-----------------eeeCCCCCcc-chhHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 011731 112 LSDF-----------------QYIDSSGRDQ-GSNVRKKSQSLVALVNDKERIIEVRQKAA 154 (478)
Q Consensus 112 L~~F-----------------qyiD~~GkD~-G~nVReKAk~Il~LL~D~e~LreER~KAk 154 (478)
...+ .|.. ++|. |..-=+++-+++++|.++...+.-++.-.
T Consensus 223 ~~~~~~~~~~k~~~~y~~~~~~~~~--~~~~~~~~~~~~~i~il~~lg~~~l~~~l~~e~~ 281 (317)
T 2awi_A 223 IKNISINGYYDLEINYLKQIYQFLT--DKNIDSYLNAVNIINIFKIIGKEDIHRSLVEELT 281 (317)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHH--HCBHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2222 1111 1221 22222444569999999888755544433
No 38
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=32.82 E-value=1.9e+02 Score=26.74 Aligned_cols=71 Identities=7% Similarity=0.062 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCC---HHHHHHH-HhhhhhhhcccceeeeCCCCCccchhHHHHHH
Q 011731 59 YQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS---ERVIDDI-REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQ 134 (478)
Q Consensus 59 y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGS---ErvVddl-R~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk 134 (478)
...||+.|..-|..+ +|..-.=+|..|..++.+.. ..+...+ ..-+..|..+- .|.-..||++|-
T Consensus 144 l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l---------~D~~~~VR~aA~ 212 (249)
T 2qk1_A 144 NEDMLKDILEHMKHK--TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV---------NDTQPAIRTIGF 212 (249)
T ss_dssp THHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH---------TCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHH
Confidence 456777777776544 89999999999999998866 5566655 55444443322 133567999998
Q ss_pred HHHHhh
Q 011731 135 SLVALV 140 (478)
Q Consensus 135 ~Il~LL 140 (478)
+.+..|
T Consensus 213 ~~l~~i 218 (249)
T 2qk1_A 213 ESFAIL 218 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766653
No 39
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=32.06 E-value=1.9e+02 Score=25.69 Aligned_cols=15 Identities=0% Similarity=0.164 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhccC
Q 011731 59 YQMIIGVIWKRINDT 73 (478)
Q Consensus 59 y~~IM~vLwKRL~d~ 73 (478)
...|+..|+++|.++
T Consensus 96 ~~~ilp~ll~~l~d~ 110 (242)
T 2qk2_A 96 ASACVPSLLEKFKEK 110 (242)
T ss_dssp HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 345555555555553
No 40
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=31.80 E-value=1.1e+02 Score=29.73 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHH-HHHHHHhh
Q 011731 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSER-VIDDIREH 105 (478)
Q Consensus 57 ~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSEr-vVddlR~h 105 (478)
.+++..|..+..|-++- .==.++|.|.|+.+|-+||--+ ..+|.+..
T Consensus 9 ~el~~~~~a~ma~A~~~--kDp~~~KlL~v~~W~~knGl~D~mynfs~~D 56 (242)
T 3zed_D 9 AELQGLLQATMARAKEV--KDAEVFKLLKLMSWTRKNDLTDHMYEWSKED 56 (242)
T ss_pred HHHHHHHHHHHHHHhhc--cCHHHHHHHHHHHHHhccCHHHHHHHHHhhC
Confidence 45667777777666521 2236999999999999999754 44444544
No 41
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=30.17 E-value=52 Score=26.97 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
Q 011731 128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (478)
Q Consensus 128 nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky 160 (478)
.+.+.++.|..||.|++.+++.++++++..++|
T Consensus 126 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 158 (166)
T 3qhp_A 126 NAKDLSAKIDWWLENKLERERMQNEYAKSALNY 158 (166)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHC
Confidence 578889999999999999999988888776666
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.37 E-value=74 Score=34.41 Aligned_cols=36 Identities=14% Similarity=0.395 Sum_probs=23.8
Q ss_pred CCCCC---CCHHHHHHHHHHhcChhhHHHHHHHHHHHhccC
Q 011731 36 NEPWG---PHGTLLADIAQATRNYHEYQMIIGVIWKRINDT 73 (478)
Q Consensus 36 NDpWG---PtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~ 73 (478)
+|.|| |++=.|+.+..-. -.++..+++-|...|.+-
T Consensus 38 DeDwGvkCPSGCrLQglLdkq--ErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 38 DEDWNYKCPSGCRMKGLIDEV--NQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp SSSBTTEEECHHHHHHHHHHH--HHHHHHHHHHHHHHHTHH
T ss_pred ccccCCCCCcccchhhhHHhh--cCcHHHHHHHHHHHHHHH
Confidence 56777 5787777765533 235677777777777653
No 43
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=28.84 E-value=1.1e+02 Score=27.91 Aligned_cols=16 Identities=6% Similarity=0.204 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHhhcC
Q 011731 127 SNVRKKSQSLVALVND 142 (478)
Q Consensus 127 ~nVReKAk~Il~LL~D 142 (478)
..||++++..++.|..
T Consensus 158 ~~vr~~~~~Fi~WL~e 173 (182)
T 3jui_A 158 LRKNQQLQRFIQWLKE 173 (182)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3688999999998864
No 44
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=28.32 E-value=1.6e+02 Score=31.34 Aligned_cols=53 Identities=8% Similarity=0.230 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHH---HHHHHHHHh
Q 011731 41 PHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKAL---TVLEYLVAH 93 (478)
Q Consensus 41 PtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKAL---tLLEYLLkN 93 (478)
-....|.||=.+.-=......||+.+.--|..+...|..+.|-| ..|+-|+..
T Consensus 72 L~k~di~Elks~~~PP~~V~~vmeaV~iLl~~~~~~W~~ak~~L~~~~Fl~~L~~f 127 (536)
T 3err_A 72 IKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNF 127 (536)
T ss_dssp CCHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCSCCCHHHHTTGGGCTTHHHHHHHC
T ss_pred CCHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCCCHHHHhhccCcHHHHHHHHhc
Confidence 45667777776665566778888887766666667899877754 244444443
No 45
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=27.80 E-value=2.1e+02 Score=25.41 Aligned_cols=86 Identities=9% Similarity=0.128 Sum_probs=47.8
Q ss_pred ChhhhhhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhh-HHHHHHHHHHHhccC---CCC
Q 011731 1 MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHE-YQMIIGVIWKRINDT---GKN 76 (478)
Q Consensus 1 ~kkvf~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~-y~~IM~vLwKRL~d~---gKn 76 (478)
|.+.|++.+..+++.+..+.-.+..+=....+|..+.. ..+..+|.+.--..+. +..|...+.+-|... .+.
T Consensus 1 m~~~~~~~L~~~~~~l~~M~~~v~~ml~~a~~al~~~d----~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~p~~~d 76 (217)
T 1xwm_A 1 MRETFADDLASLHNKLIEMGRLTEVALQQAIEAFQTQN----ANLAMAVIDGDGSIDALEEEVNDFALWLIAAQQPVATD 76 (217)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 67889999999998888765322222223334443433 2455666655444433 466666666655431 234
Q ss_pred chhhhhHHHHHHHH
Q 011731 77 WRHVYKALTVLEYL 90 (478)
Q Consensus 77 WR~VyKALtLLEYL 90 (478)
.|.+.-.|.++.+|
T Consensus 77 ~~~~~~~l~i~~~l 90 (217)
T 1xwm_A 77 LRRIVAAIKIASDI 90 (217)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666667776666
No 46
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=26.19 E-value=31 Score=22.80 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=12.4
Q ss_pred cCCCCCCCChHHhhhcc
Q 011731 283 EQNIGAPPSYEEAVSES 299 (478)
Q Consensus 283 ~q~~~aPpsyeea~~~~ 299 (478)
+-.+-.|||||+.+...
T Consensus 7 ntgakqppsyedcik~~ 23 (26)
T 2jmf_B 7 NTGAKQPPSYEDCIKXX 23 (26)
T ss_pred CCCCCCCCCHHHHHHhh
Confidence 34456799999998653
No 47
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=25.29 E-value=34 Score=34.21 Aligned_cols=25 Identities=4% Similarity=0.259 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHhhcCH-HHHHHHHH
Q 011731 127 SNVRKKSQSLVALVNDK-ERIIEVRQ 151 (478)
Q Consensus 127 ~nVReKAk~Il~LL~D~-e~LreER~ 151 (478)
..|++.+++|++|+... +.|++.+.
T Consensus 232 ~~l~~i~~~il~~y~~~~~~L~~i~~ 257 (358)
T 2pk2_A 232 ELLDELTHEFLQILEKTPNRLKRIWN 257 (358)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccchhc
Confidence 47999999999998743 44554443
No 48
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=24.88 E-value=2.8e+02 Score=24.64 Aligned_cols=93 Identities=9% Similarity=0.105 Sum_probs=64.8
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHHHHhhhhhh
Q 011731 30 VLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQI 109 (478)
Q Consensus 30 VrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVddlR~hi~~I 109 (478)
+.+=.-+=+|.....+..-++.. . ..++..|++-|......|. .-||+||+.|=+.+.+..++.-+..|
T Consensus 36 LL~WLQD~NWPvA~~i~~~L~~~--~----~~l~p~I~~vl~s~D~~W~-----ywil~~lv~~~~~~~~~~l~~eL~rl 104 (134)
T 3ut4_A 36 LLKWLQDYNWPIAKDILPVVVLH--Q----SIAMPHILTILQGNDIMWK-----YWVIKLMIPYLIYPNKQLVKSELERL 104 (134)
T ss_dssp HHGGGSCTTSTTHHHHHHHHHHT--H----HHHHHHHHHHHHSSCHHHH-----HHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccHHHHHHHHHHc--c----HhhHHHHHHHHHcCChHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445577898877766666642 2 4677788887777666775 35889999999999888887765554
Q ss_pred hcccceeeeCCCCCccchhHHHHHHHHHHhh
Q 011731 110 STLSDFQYIDSSGRDQGSNVRKKSQSLVALV 140 (478)
Q Consensus 110 r~L~~FqyiD~~GkD~G~nVReKAk~Il~LL 140 (478)
-. .+.+.+.-..|.+.|++|++-.
T Consensus 105 ~~-------~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 105 SS-------LEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HT-------CCCSSGGGHHHHHHHHHHHHHH
T ss_pred Hh-------CCCcchHHHHHHHHHHHHHHHH
Confidence 32 2345567778888898888643
No 49
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=24.87 E-value=3.8e+02 Score=24.12 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=47.8
Q ss_pred ChhhhhhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhH-HHHHHHHHHHhcc---CCCC
Q 011731 1 MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEY-QMIIGVIWKRIND---TGKN 76 (478)
Q Consensus 1 ~kkvf~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y-~~IM~vLwKRL~d---~gKn 76 (478)
|.+.|++.+..+++.+..+...+...=.+..+|..+.. ..+..+|.+.-...+.+ .+|-..+.+-|.. ..+.
T Consensus 1 mr~~~~~~L~~l~~~l~~M~~~v~~~l~~a~~al~~~d----~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~d 76 (235)
T 1sum_B 1 MNRLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERN----ESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKP 76 (235)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 77899999999999988865433222223334443333 35666666655444443 4455555544322 2345
Q ss_pred chhhhhHHHHHHHH
Q 011731 77 WRHVYKALTVLEYL 90 (478)
Q Consensus 77 WR~VyKALtLLEYL 90 (478)
.|.|.-.|.++.-|
T Consensus 77 lr~i~~~l~i~~dl 90 (235)
T 1sum_B 77 LLTVTAGIRVAELI 90 (235)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666555555555
No 50
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=24.40 E-value=3e+02 Score=24.97 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHh
Q 011731 39 WGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH 93 (478)
Q Consensus 39 WGPtgtlL~EIAqaT-yn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkN 93 (478)
=|.++.-|..|..+. -|.+.+..|+..|.+-+..... -|.+=+|-||+=+++|
T Consensus 18 p~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~--~hKL~~LYVvDSIvR~ 71 (157)
T 3clj_A 18 SGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPD--SHKLGSLYIIDSIGRA 71 (157)
T ss_dssp SSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCG--GGHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCC--cceeeeeeehHHHHHH
Confidence 588888888887775 6777888899998888875432 4556677777766665
No 51
>2rmh_A Urocortin-3; CRF ligand, sauvagine, astressin2B, urotensins, CRF receptors, amidation, hormone, secreted; NMR {Synthetic}
Probab=24.39 E-value=29 Score=25.20 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=21.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHhhhh
Q 011731 135 SLVALVNDKERIIEVRQKAAANRDKF 160 (478)
Q Consensus 135 ~Il~LL~D~e~LreER~KAkknR~Ky 160 (478)
+|+..|-+-++-+.+|++|+.||.=+
T Consensus 10 ~ll~~l~e~Ara~~~r~qAa~Na~ll 35 (38)
T 2rmh_A 10 NIMNLLFNIAKAKNLRAQAAANAHLM 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 57777888899999999999998643
No 52
>2rmg_A Urocortin-2; CRF ligand, sauvagine, astressin, urotensins, CRF receptors, hormone, secreted; NMR {Synthetic}
Probab=24.10 E-value=32 Score=24.98 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=21.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHhhhh
Q 011731 135 SLVALVNDKERIIEVRQKAAANRDKF 160 (478)
Q Consensus 135 ~Il~LL~D~e~LreER~KAkknR~Ky 160 (478)
+|+..|-+-.+-+.+|++|+.||.=+
T Consensus 10 ~LL~~lle~Ar~~~~r~qAa~Na~ll 35 (38)
T 2rmg_A 10 GLLQILLEQARARAAREQATTNARIL 35 (38)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46667777789999999999998754
No 53
>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} SCOP: a.266.1.2 PDB: 2d0u_A*
Probab=23.51 E-value=98 Score=31.77 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHHHHHHHhC--C---H--HHHHHHHhhh-----hhhhcccceeeeCCCCCccchhHHHHHH-----HHHHhhcC-HHH
Q 011731 84 LTVLEYLVAHG--S---E--RVIDDIREHS-----YQISTLSDFQYIDSSGRDQGSNVRKKSQ-----SLVALVND-KER 145 (478)
Q Consensus 84 LtLLEYLLkNG--S---E--rvVddlR~hi-----~~Ir~L~~FqyiD~~GkD~G~nVReKAk-----~Il~LL~D-~e~ 145 (478)
+.+||+||-+- . . .|..++|..+ ..|+.|..- + .||+.+. +|.+.++| .+.
T Consensus 273 ~~~lD~~LGi~~~~~~~~~~~fl~~mr~ymP~~hr~fL~~l~~~----------~-~vr~~v~~~~~~~L~ea~~~~~~~ 341 (406)
T 2d0t_A 273 FQCFDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRNFLCSLESN----------P-SVREFVLSKGDAGLREAYDACVKA 341 (406)
T ss_dssp HHHHHHHTTCCSSCSSSHHHHHHHHHGGGSCHHHHHHHHHHHTS----------C-CHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccccCChHHHHHHHHhhCCchHHHHHHHHHhc----------C-CccccccCCCCHHHHHHHHHHHHH
Confidence 57889999643 2 2 4777777542 223333321 2 5555543 34444443 467
Q ss_pred HHHHHHHHHHHhhhhhcc
Q 011731 146 IIEVRQKAAANRDKFRNT 163 (478)
Q Consensus 146 LreER~KAkknR~Ky~g~ 163 (478)
|+.-|.+..++=.+|++.
T Consensus 342 l~~fR~~Hi~~V~ryI~~ 359 (406)
T 2d0t_A 342 LVSLRSYHLQIVTKYILI 359 (406)
T ss_dssp HHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999999985
No 54
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=23.01 E-value=45 Score=28.34 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHhcChhhHHHHHHHHHHHhcc---------CCCCchhhhhHHH
Q 011731 41 PHGTLLADIAQATRNYHEYQMIIGVIWKRIND---------TGKNWRHVYKALT 85 (478)
Q Consensus 41 PtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d---------~gKnWR~VyKALt 85 (478)
++..+|..|=..+ ..+....+.||+++.. ....||.+|-.|.
T Consensus 25 ~tp~QL~~IE~~n---P~L~~dTdeLWk~~c~rdF~~~~p~e~esWRelY~rl~ 75 (97)
T 4hfx_A 25 CTPDQLYRIEEYN---HVLIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQ 75 (97)
T ss_dssp CCHHHHHHHHTC---------CCHHHHHHHC----CCSCCCSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHhC---cccchhhHHHHHHHHHhHCcccCCCCCCCHHHHHHHHH
Confidence 4566666664432 3566677899999864 3689999997653
No 55
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=22.23 E-value=1.1e+02 Score=24.65 Aligned_cols=46 Identities=13% Similarity=0.371 Sum_probs=38.4
Q ss_pred HHHHhccCCCCchhhhhHHH----HHHHHHHhCCHHHHHHHHhhhhhhhc
Q 011731 66 IWKRINDTGKNWRHVYKALT----VLEYLVAHGSERVIDDIREHSYQIST 111 (478)
Q Consensus 66 LwKRL~d~gKnWR~VyKALt----LLEYLLkNGSErvVddlR~hi~~Ir~ 111 (478)
|..-+.+....|.++-|-|. -.+|+-..|.+.+-.-|+.||..|+.
T Consensus 19 Ir~~Vtd~~~~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 19 VSRIVKNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp HHHHCSSSCSCHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence 34456678889999998876 47899999999999999999998863
No 56
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=21.77 E-value=97 Score=30.71 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=20.4
Q ss_pred HHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCH
Q 011731 63 IGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSE 96 (478)
Q Consensus 63 M~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSE 96 (478)
+..|..-|.. .++..+..+|.+|..|+..+..
T Consensus 416 i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 416 IKPLCDLLIC--PDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 4677777888888888776644
No 57
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=21.29 E-value=4.2e+02 Score=23.27 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=47.5
Q ss_pred ChhhhhhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhH-HHHHHHHHHHhcc---CCCC
Q 011731 1 MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEY-QMIIGVIWKRIND---TGKN 76 (478)
Q Consensus 1 ~kkvf~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y-~~IM~vLwKRL~d---~gKn 76 (478)
|.+.|+..+..+++.+..+...+...=.+..+|..+.. ..+..+|.+.-...+.+ .+|-..+.+-|.. ..+.
T Consensus 1 m~~~~~~~l~~l~~~l~~M~~~v~~~l~~a~~al~~~d----~~~a~~v~~~d~~iD~l~~~I~~~~~~lla~~~p~a~d 76 (216)
T 2i0m_A 1 MRNQFDLELHELEQSFLGLGQLVLETASKALLALASKD----KEMAELIINKDHAINQGQSAIELTCARLLALQQPQVSD 76 (216)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 67889999999999988866433233333344554443 35666666665555443 4555555554432 1235
Q ss_pred chhhhhHHHHHHHH
Q 011731 77 WRHVYKALTVLEYL 90 (478)
Q Consensus 77 WR~VyKALtLLEYL 90 (478)
.|.|.-.|.++.-|
T Consensus 77 lr~i~~~l~i~~dl 90 (216)
T 2i0m_A 77 LRFVISIMSSCSDL 90 (216)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555555
No 58
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.90 E-value=1.8e+02 Score=23.93 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=46.0
Q ss_pred cChhhHHHHHHHHHHHhccCCCCchhhhhHHHHH---HHHHHhCCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHH
Q 011731 54 RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVL---EYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVR 130 (478)
Q Consensus 54 yn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLL---EYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVR 130 (478)
-++-+|.+|++.+|+...+ .=|.++++|+.| -|-+.+|.. ...-++.-+..|+.+.. ...|+.|.
T Consensus 15 g~~~eaHEvlE~~W~~~~~---~~~~~~qGLIq~Ava~~h~~~gn~-a~~ll~~a~~~L~~~~~--------~~~gidv~ 82 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLKATG---EERRLLQGVILLAAALHQRRLGRP-GLRNLRKAEARLEGLPC--------PLMGLDWR 82 (94)
T ss_dssp TCHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHTTCCS--------SBTTBCHH
T ss_pred CChHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHhCCC--------ccCCcCHH
Confidence 3456788999999999833 346666666554 344557887 55555555555554422 24566666
Q ss_pred HHHHHHHHhh
Q 011731 131 KKSQSLVALV 140 (478)
Q Consensus 131 eKAk~Il~LL 140 (478)
.....|-++|
T Consensus 83 ~L~~~~~~~l 92 (94)
T 2cwy_A 83 SLLQEARRRL 92 (94)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6555555554
No 59
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=20.36 E-value=88 Score=31.75 Aligned_cols=86 Identities=13% Similarity=0.126 Sum_probs=52.9
Q ss_pred hhhhhHHHHHHHHHHhCC-----------HHHHHHHHhhhhhhhcccceeee----CCCCC-----ccchhHHHHHHHHH
Q 011731 78 RHVYKALTVLEYLVAHGS-----------ERVIDDIREHSYQISTLSDFQYI----DSSGR-----DQGSNVRKKSQSLV 137 (478)
Q Consensus 78 R~VyKALtLLEYLLkNGS-----------ErvVddlR~hi~~Ir~L~~Fqyi----D~~Gk-----D~G~nVReKAk~Il 137 (478)
|.+-|+..||+-|++.+. .+++-++..|+..|-...+=... +.-|. -.=.|+-.|+++++
T Consensus 9 r~~~~~~kll~~l~~lC~~prL~nSPP~l~diLpdt~q~L~~I~~~~~~~~~~~~~~~~~~~~yl~i~l~nl~~K~kq~~ 88 (323)
T 3op0_A 9 RALGRAVRMLQRLEEQCVDPRLSVSPPSLRDLLPRTAQLLREVAHSRREAGGGGPGGPGGSGDFLLIYLANLEAKSRQVA 88 (323)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTCCCSSSCHHHHHHHHHHHHHHHHHHHHTCSCSSCCSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCcCCCCccHHHHhHHHHHHHHHHHhhhhhccccCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 678888888888887654 25666666777666331110000 01010 13457889999999
Q ss_pred Hhh------cCHHHHHHHHHHHHHHhhhhhcc
Q 011731 138 ALV------NDKERIIEVRQKAAANRDKFRNT 163 (478)
Q Consensus 138 ~LL------~D~e~LreER~KAkknR~Ky~g~ 163 (478)
.|+ ...|.|.+|....+.+=.|+.-+
T Consensus 89 ~Lf~~~~~k~~~e~~f~e~S~~RR~L~KlsLi 120 (323)
T 3op0_A 89 ALLPPRGRRSANDELFRAGSRLRRQLAKLAII 120 (323)
T ss_dssp HHSCSSSCSSCCGGGGSTTBHHHHHHHHHHHH
T ss_pred HhcCcccccchhhhhhccccHHHHHHHHHHHH
Confidence 999 36677877766655555565443
No 60
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=20.21 E-value=40 Score=33.40 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHhhcC
Q 011731 128 NVRKKSQSLVALVND 142 (478)
Q Consensus 128 nVReKAk~Il~LL~D 142 (478)
.+|.||+.|.++|.+
T Consensus 247 ~~~~ka~~v~~~le~ 261 (265)
T 3b2a_A 247 IIRLKAKKVSDLIDS 261 (265)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 589999998888753
No 61
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.14 E-value=1.6e+02 Score=27.18 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhcccC
Q 011731 127 SNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTA 165 (478)
Q Consensus 127 ~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky~g~~~ 165 (478)
..||+.+++|.+| ...|+++|.+...-=.|- |+..
T Consensus 113 akI~aL~~Ei~~L---r~qL~~~R~k~~~em~Ke-Gip~ 147 (175)
T 3lay_A 113 AKINAVAKEMESL---GQKLDEQRVKRDVAMAQA-GIPR 147 (175)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHT-TCC-
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh-CCCC
Confidence 5899999999999 567888887643332222 6644
No 62
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.00 E-value=2.6e+02 Score=29.80 Aligned_cols=101 Identities=16% Similarity=0.304 Sum_probs=0.0
Q ss_pred cCCCCC---CCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCC----------HHHHHH
Q 011731 35 SNEPWG---PHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS----------ERVIDD 101 (478)
Q Consensus 35 SNDpWG---PtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGS----------ErvVdd 101 (478)
.++.|| |+|=.|+.+..-+ ...+..-++.|..+|.+-.+....++--.+.|.-+|+.-= .++-++
T Consensus 38 aDeDwGvkCPSGCrLqglL~kq--erdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~e 115 (491)
T 1m1j_A 38 VDDDWGTKCPSGCRMQGIIDDT--DQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTE 115 (491)
T ss_dssp CTTSTTTEECCSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCccchhhHHHHh--hhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q ss_pred HHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 011731 102 IREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAAN 156 (478)
Q Consensus 102 lR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkkn 156 (478)
|+.|+..|+. .|-... +-|.+|. ..|++.|.+.+++
T Consensus 116 Le~ri~yIK~----------------kVd~qi-~~IrvLq--~~l~~q~skIQRL 151 (491)
T 1m1j_A 116 LRRRIVTLKQ----------------RVATQV-NRIKALQ--NSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHH----------------HHHHHH-HHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------HHHHHH-HHHHHHH--HHHHHHHHHHHHH
Done!