BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011732
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 913 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 972
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 973 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1023
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1024 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1083
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1084 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1135
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1136 VVEELTRIH 1144
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 102/248 (41%), Gaps = 22/248 (8%)
Query: 232 MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSD 291
M + L I VGD +L +Y E+I D + ++ ++D D + ++
Sbjct: 929 MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAE 988
Query: 292 RKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLAS 351
++ V D +L +H+GE GS + + LG+ +
Sbjct: 989 NAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE---T 1039
Query: 352 FESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSEF 406
+Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1040 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE- 1098
Query: 407 RSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQV 466
R E G +DGD++ FL+++ + + V++ + S ++ + +V
Sbjct: 1099 RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIKV 1151
Query: 467 VQLLERVH 474
V+ L R+H
Sbjct: 1152 VEELTRIH 1159
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct
Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 927 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 986
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 987 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1037
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1038 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1097
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1098 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1149
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1150 VVEELTRIH 1158
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 102/248 (41%), Gaps = 22/248 (8%)
Query: 232 MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSD 291
M + L I VGD +L +Y E+I D + ++ ++D D + ++
Sbjct: 929 MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAE 988
Query: 292 RKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLAS 351
++ V D +L +H+GE GS + + LG+ +
Sbjct: 989 NAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE---T 1039
Query: 352 FESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSEF 406
+Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1040 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE- 1098
Query: 407 RSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQV 466
R E G +DGD++ FL+++ + + V++ + S ++ + +V
Sbjct: 1099 RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIKV 1151
Query: 467 VQLLERVH 474
V+ L R+H
Sbjct: 1152 VEELTRIH 1159
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 927 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 986
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 987 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1037
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1038 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1097
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1098 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1149
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1150 VVEELTRIH 1158
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 102/248 (41%), Gaps = 22/248 (8%)
Query: 232 MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSD 291
M + L I VGD +L +Y E+I D + ++ ++D D + ++
Sbjct: 929 MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAE 988
Query: 292 RKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLAS 351
++ V D +L +H+GE GS + + LG+ +
Sbjct: 989 NAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE---T 1039
Query: 352 FESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSEF 406
+Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1040 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE- 1098
Query: 407 RSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQV 466
R E G +DGD++ FL+++ + + V++ + S ++ + +V
Sbjct: 1099 RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIKV 1151
Query: 467 VQLLERVH 474
V+ L R+H
Sbjct: 1152 VEELTRIH 1159
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 102/248 (41%), Gaps = 22/248 (8%)
Query: 232 MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSD 291
M + L I VGD +L +Y E+I D + ++ ++D D + ++
Sbjct: 929 MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAE 988
Query: 292 RKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLAS 351
++ V D +L +H+GE GS + + LG+ +
Sbjct: 989 NAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE---T 1039
Query: 352 FESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSEF 406
+Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1040 STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE- 1098
Query: 407 RSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQV 466
R E G +DGD++ FL+++ + + V++ + S ++ + +V
Sbjct: 1099 RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIKV 1151
Query: 467 VQLLERVH 474
V+ L R+H
Sbjct: 1152 VEELTRIH 1159
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
Length = 1143
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 912 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 971
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 972 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1022
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1023 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1082
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1083 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1134
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1135 VVEELTRIH 1143
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 909 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 968
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 969 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1019
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1020 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1079
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1080 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1131
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1132 VVEELTRIH 1140
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
Length = 1150
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 919 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 978
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 979 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1029
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1030 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1089
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1090 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1141
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1142 VVEELTRIH 1150
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 909 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 968
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 969 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1019
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1020 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1079
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1080 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1131
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1132 VVEELTRIH 1140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,561,123
Number of Sequences: 62578
Number of extensions: 463483
Number of successful extensions: 839
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 23
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)