BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011732
(478 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 16/213 (7%)
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR 292
++ L A +RI VGD ++ I+F SY +L D + V C ++D DT +D+
Sbjct: 993 VVSLDAQGSRIVVGDMQESIIFASYKPLENRLVTFADDVMPKFVTRCTMLDYDTVAAADK 1052
Query: 293 KGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASF 352
G+I VL RL+ N S + P + E V + + L A +GD + S
Sbjct: 1053 FGNIYVL----RLDGNTSRSVDEDPTGMTIVHEKPV-LMGAAHKASLVAHFFVGDIITSL 1107
Query: 353 ESS------QTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSE 405
+ + ++ + L GSI +P +S E+ + L +++ L ++G DH
Sbjct: 1108 HRTAMVAGGREVLLYTGLSGSIGALVPFVSKEDVDTLSTLESHLRQE--NNSIVGRDHLA 1165
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAV 438
+RS P V ++DGD+ F L+ +Q A+
Sbjct: 1166 YRSSYAP--VKSVIDGDLCETFGLLSPAKQNAI 1196
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4
Length = 1217
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 48/220 (21%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I C
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054
Query: 302 SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
RL N + E + P N A YH+GE +S++K + I
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
+++ +TL G I I +P +S E+++ + V+ L + HP PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155
Query: 399 LGNDHSEFRSRENPVGVPKILDGDMLSQFLELTSTQQEAV 438
G DH FRS P V ++DGD+ QF + +Q+ V
Sbjct: 1156 CGRDHLSFRSYYFP--VKNVIDGDLCEQFNSMEPNKQKNV 1193
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 48/220 (21%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I C
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054
Query: 302 SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
RL N + E + P N A YH+GE +S++K + I
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
+++ +TL G I I +P +S E+++ + V+ L + HP PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155
Query: 399 LGNDHSEFRSRENPVGVPKILDGDMLSQFLELTSTQQEAV 438
G DH FRS P V ++DGD+ QF + +Q+ V
Sbjct: 1156 CGRDHLSFRSYYFP--VKNVIDGDLCEQFNSMEPNKQKNV 1193
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
Length = 1217
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 48/220 (21%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I C
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054
Query: 302 SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
RL N + E + P N A YH+GE +S++K + I
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
+++ +TL G I I +P +S E+++ + V+ L + HP PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155
Query: 399 LGNDHSEFRSRENPVGVPKILDGDMLSQFLELTSTQQEAV 438
G DH FRS P V ++DGD+ QF + +Q+ V
Sbjct: 1156 CGRDHLSFRSYYFP--VKNVIDGDLCEQFNSMEPNKQKNV 1193
>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp12 PE=1 SV=1
Length = 1206
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 115/284 (40%), Gaps = 41/284 (14%)
Query: 173 ETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFM 232
E +L L T G+ +A+ P+ R LA G + + N + +R+ +
Sbjct: 923 EGKKLELISHTEIDGIPMALTPFQGR-MLAGVGRFLRI--YDLGNKKMLRKGELSAVPLF 979
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR 292
I +T +RI V D + + F Y + L D R VL+D DT D+
Sbjct: 980 ITHITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDK 1039
Query: 293 KGSIAVLSCSDRL-----EDNA-------SPECNLTPN-----CAYHMGEIAVSIRKGSF 335
G+I +L C + + E+N+ P N TP+ + +I S++K
Sbjct: 1040 FGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFTNDIPTSLQKVQL 1099
Query: 336 IYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPL 394
+ E ++ ++ + LLG++ +F P I+ E+ + Q +
Sbjct: 1100 V----------------EGAREVLLWTGLLGTVGVFTPFINQEDVRFFQ--QLEFLLRKE 1141
Query: 395 TAPLLGNDHSEFRSRENPVGVPKILDGDMLSQFLELTSTQQEAV 438
PL G DH +RS PV ++DGD+ + L QE +
Sbjct: 1142 CPPLAGRDHLAYRSYYAPVKC--VIDGDLCEMYYSLPHPVQEMI 1183
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 48/220 (21%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ ++ Y + +L D R V L+D DT +D+ G+I C
Sbjct: 999 RVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNI----C 1054
Query: 302 SDRLEDNASPECNLTP------------NCA---------YHMGEIAVSIRKGSFIYKLP 340
RL N + E + P N A YH+GE +S++K + I
Sbjct: 1055 VVRLPPNTNDEVDEDPTGNKALRDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI---- 1110
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARL-AIHPLTAPL 398
+++ +TL G I I +P +S E+++ + V+ L + HP PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHP---PL 1155
Query: 399 LGNDHSEFRSRENPVGVPKILDGDMLSQFLELTSTQQEAV 438
G DH FRS P V ++DGD+ QF + +Q+ V
Sbjct: 1156 CGRDHLSFRSYYFP--VKNVIDGDLCEQFNSMEPNKQKNV 1193
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1
Length = 1217
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 92/219 (42%), Gaps = 46/219 (21%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301
R+ V D ++ + + Y + +L D R + L+D DT +D+ G+I C
Sbjct: 999 RVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMASADKFGNI----C 1054
Query: 302 SDRLEDNASPECNLTPN---------------------CAYHMGEIAVSIRKGSFIYKLP 340
RL N S + + P YH+GE +S++K + I
Sbjct: 1055 VVRLPPNTSDDVDEDPTGNKALWDRGLLNGASQKAEIIINYHIGETVLSLQKTTLI---- 1110
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARLAIHPLTAPLL 399
+++ +TL G I I +P +S E+++ + ++ + + PL
Sbjct: 1111 ------------PGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHLE--MHMRSEFPPLC 1156
Query: 400 GNDHSEFRSRENPVGVPKILDGDMLSQFLELTSTQQEAV 438
G DH FRS P V ++DGD+ QF + +Q++V
Sbjct: 1157 GRDHLSFRSYYFP--VKNVIDGDLCEQFNSMDPHKQKSV 1193
>sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RSE1 PE=3 SV=1
Length = 1219
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 142/357 (39%), Gaps = 69/357 (19%)
Query: 103 TKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDA 162
+K ++ ++ N SM+ S +S+ +VG T Q + L +S D +
Sbjct: 871 SKSNQVIQSLQLDGNESIVSMSAVSFNKTSTPSVPASHLVVGVCTNQ---TILPNSYDKS 927
Query: 163 SCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVR 222
K+ + L+L + T + + + D+ +AS GN +R
Sbjct: 928 YLYTFKIGKK---HLQLVHKTELDHIPQVLENFQDKLLVAS-GN-------------HIR 970
Query: 223 RFAVGRTRFM------------IMLLTAHFTRIAVGDC-RDGILFYSYHEDARKLEQIYC 269
+ +G+ + + I + RI + D + I+F + E +
Sbjct: 971 LYDIGQKQLLKKSTTIIDFSTNINKIIPQTNRIIICDSHKSSIVFAKFDESQNQFVPFAD 1030
Query: 270 DPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTP-------NCAY- 321
D +R + + +D+DT + D+ G+I V + + A + + +C Y
Sbjct: 1031 DVMKRQITSIMNLDIDTLIGGDKFGNIFVTRIDEDISKQADDDWTILKTQDGILNSCPYK 1090
Query: 322 -------HMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIP- 373
H+G+I S G LA ES +I + L G+I + IP
Sbjct: 1091 LQNLIEFHIGDIITSFNLGCL------------NLAGTES----VIYTGLQGTIGLLIPL 1134
Query: 374 ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVGVPKILDGDMLSQFLEL 430
+S E ELL +Q L + L+G DH + RS NP + ++DGD+L +FLE
Sbjct: 1135 VSKSEVELLFNLQ--LYMQQSQNNLVGKDHLKLRSYYNP--IKNVIDGDLLERFLEF 1187
>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum
GN=sf3b3 PE=3 SV=1
Length = 1256
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 38/215 (17%)
Query: 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS- 300
R+ VGD ++ I F Y L D + R + V++D DT +D+ G+I VL
Sbjct: 1038 RLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRL 1097
Query: 301 ---CSDRLEDN--------ASPECNLTPNCAYHM-----GEIAVSIRKGSFIYKLPADDA 344
SD +E++ S N P+ H+ G+ ++ K S + P
Sbjct: 1098 PLLISDEVEEDPTGTKLKFESGTLNGAPHKLDHIANFFVGDTVTTLNKTSLVVGGPE--- 1154
Query: 345 LGDCLASFESSQTTIIASTLLGSIVIFIPISS-EEYELLEAVQARLAIHPLTAPLLGNDH 403
I+ +T+ G+I IP +S E+ + ++ + L PL G DH
Sbjct: 1155 -------------VILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCL--PLCGRDH 1199
Query: 404 SEFRSRENPVGVPKILDGDMLSQFLELTSTQQEAV 438
+RS P V I+DGD+ QF L +Q ++
Sbjct: 1200 LAYRSYYFP--VKNIIDGDLCEQFSTLNYQKQLSI 1232
>sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RSE1 PE=3 SV=2
Length = 1256
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 45/222 (20%)
Query: 241 TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
+RI VGD F Y + D +R + V +D DT + D+ G+I V
Sbjct: 1026 SRIVVGDSSMSTTFVKYDSTENQFIPFADDIMKRQITALVTLDYDTIIGGDKFGNIFVSR 1085
Query: 301 CSDRLEDNASPECN---------------LTPNCAYHMGEIAVSIRKGSFIYKLPADDAL 345
+ + + + + L C +++ +I S KGS +
Sbjct: 1086 VPETISQQSDKDWSLLRYQESYLNGSGSRLKNICEFYLQDIPTSFTKGSLVM-------- 1137
Query: 346 GDCLASFESSQTTIIASTLLGSIVIFIPISSE-EYELLEAVQARLAIH-----------P 393
+ +II + + G++ + +P+S+E E + L +Q L +
Sbjct: 1138 --------GGKESIIYTGIQGTLGLLLPLSTENEVKFLGDLQLLLRKYFDYNFDDFDKDK 1189
Query: 394 LTAPLLGNDHSEFRSRENPVGVPKILDGDMLSQFLELTSTQQ 435
LLG DH +FRS NP V ++DGD++ +F EL+ + +
Sbjct: 1190 NGYNLLGKDHLKFRSYYNP--VKNVMDGDLIERFYELSQSMK 1229
>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2
Length = 1216
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 12/212 (5%)
Query: 232 MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSD 291
+I+ L +RI VGD + G+++ +Y + +L D R ++D D+ +D
Sbjct: 988 LIVSLNTQGSRIIVGDVQHGLIYVAYKSETNRLIPFADDTIARWTTCTTMVDYDSTAGAD 1047
Query: 292 RKGSIAVLSCSDRL---EDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDC 348
+ G++ +L C ++ D E +L + Y G S R + D C
Sbjct: 1048 KFGNLWILRCPEKASQESDEPGSEVHLVHSRDYLHG---TSNRLALMAHVYTQDIPTSIC 1104
Query: 349 LASF-ESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEF 406
+ Q ++ G+I + IP +S E+ + ++++ L PL G DH +
Sbjct: 1105 KTNLVVGGQEVLLWGGFQGTIGVLIPFVSREDADFFQSLEQHLRSE--DPPLAGRDHLMY 1162
Query: 407 RSRENPVGVPKILDGDMLSQFLELTSTQQEAV 438
R P V ++DGD+ ++ L + +++ +
Sbjct: 1163 RGCYVP--VKGVIDGDLCERYTMLPNDKKQMI 1192
>sp|Q6CAH5|RSE1_YARLI Pre-mRNA-splicing factor RSE1 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=RSE1 PE=3 SV=1
Length = 1143
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 27/259 (10%)
Query: 190 LAICPYLDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF---TRIA 244
LA+C Y + +A G+ Y G Q +R+ + ++ + L AHF R+A
Sbjct: 880 LALCAY-NGLLVAGIGSQVRLYALGLK----QVLRKAQIELSKRVTCL--AHFAGSNRVA 932
Query: 245 VGDCRDGILFYSYHED--ARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302
VGD R + E+ + + CD R V +D +T + DR G +L
Sbjct: 933 VGDIRQSVTVCVVLEEDSGHVIYPLVCDKISRQVTCLFFVDYETVALGDRFGGFTML--- 989
Query: 303 DRLEDNASPECNLTPNCAYHMGEIAVSIRK-GSFIYKLPADDALGDCLASFESSQTTIIA 361
R+ AS + N A H+ ++ ++ F + A + D + ++
Sbjct: 990 -RIPSEASKLADEDHN-AVHLRQLEPTLNGPAHFRFDHVASFHIEDVPVAIHMYNDYLVV 1047
Query: 362 STLLGSIVIFIPI-SSEEYELLEAVQARL-AIHPLTAPLLGNDHSEFRSRENPVGVPKIL 419
LLG++ F+P+ S ++ L+ ++ + A P L+G DH FR PV +++
Sbjct: 1048 CGLLGTVSAFVPVVSPKQSRDLKTIEKFVCASDP---GLMGRDHGRFRGYYVPV--KEVV 1102
Query: 420 DGDMLSQFLELTSTQQEAV 438
DGDML + L + ++E V
Sbjct: 1103 DGDMLREVLVMDEKRREEV 1121
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1
SV=1
Length = 1088
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 17/200 (8%)
Query: 243 IAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302
I VGD I Y + +E+ D + ++ ++D D + ++ + +L+
Sbjct: 880 IVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAEN--NFNLLTVK 937
Query: 303 DRLEDNASPE-CNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIA 361
E E L YH+GE R GS + +LP D +G T+I
Sbjct: 938 KNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP-DSEIGQI--------PTVIF 988
Query: 362 STLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVGVPK---I 418
T+ G I + + E+Y LE +Q+ L + + G H ++RS N +
Sbjct: 989 GTVNGVIGVIASLPQEQYTFLEKLQSSL--RKVIKGVGGLSHEQWRSFNNEKRTAEARNF 1046
Query: 419 LDGDMLSQFLELTSTQQEAV 438
LDGD++ FL+L+ + E +
Sbjct: 1047 LDGDLIESFLDLSRNKMEDI 1066
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2
SV=2
Length = 1088
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 19/201 (9%)
Query: 243 IAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302
IAVGD I Y + +E+ D + + +++ D + +D +I + +
Sbjct: 880 IAVGDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILNDDIYLGTDNCFNIFTVKKN 939
Query: 303 DRLEDNASPE--CNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTII 360
+ + A+ E + YH+GE R GS + KLP D +G T+I
Sbjct: 940 N---EGATDEERARMEVVGEYHIGEFVNRFRHGSLVMKLP-DSDIGQI--------PTVI 987
Query: 361 ASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVGVPK--- 417
T+ G I + + E+Y LE +Q L + + G H ++RS N +
Sbjct: 988 FGTVSGMIGVIASLPQEQYAFLEKLQTSL--RKVIKGVGGLSHEQWRSFNNEKRTAEAKG 1045
Query: 418 ILDGDMLSQFLELTSTQQEAV 438
LDGD++ FL+L+ + E +
Sbjct: 1046 YLDGDLIESFLDLSRGKMEEI 1066
>sp|Q753D4|RSE1_ASHGO Pre-mRNA-splicing factor RSE1 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RSE1 PE=3 SV=2
Length = 1288
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 123/324 (37%), Gaps = 65/324 (20%)
Query: 168 KLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDN--PQRVRRFA 225
K ++L + T + A+CP+ D+ L NA + G + +
Sbjct: 947 KAANNRRFELLALHDTVAGSTIHAMCPFHDK-LLVPLANAVVLYGLGKKQLLKKSISYLP 1005
Query: 226 VGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD 285
T+ ++ L + TR+AVGD + + + E + + D ++R V +D
Sbjct: 1006 TSITK-IVALDQWNGTRVAVGDIHESVTLLHFDERKNQFIPVADDVTKRHVTVVKFVDEC 1064
Query: 286 TAVVSDRKGSIAVLSCS---DRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPAD 342
T + DR G+I +L DRL LT N I +IR+ F ++L
Sbjct: 1065 TVIGGDRFGNIWLLRLPLEYDRLIKEGVDSYLLTLNTG-----IPSNIRECVFKWQLLNH 1119
Query: 343 DALGDCLASFE-------SSQTTIIASTLLGSIVIFIPISS----EEYELLE-------- 383
+ D SF + + +I+ + L G+I IP+ + E ++LLE
Sbjct: 1120 FYINDIPMSFHLIASPQMADRASILYAGLQGTIGYLIPLITRREIEFFDLLEQAMRDADH 1179
Query: 384 --------------------------------AVQARLAIHPLTAPLLGNDHSEFRSREN 411
+VQ + I L+G D +RS N
Sbjct: 1180 LFYLDQENRLNDTSELNDGADEEGSVIDRRFPSVQKKRKIPEGAYSLVGRDAMMYRSYYN 1239
Query: 412 PVGVPKILDGDMLSQFLELTSTQQ 435
P V + DGD+ QFLEL +++
Sbjct: 1240 P--VRHVTDGDLCEQFLELYPSEK 1261
>sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1 PE=3
SV=2
Length = 1209
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 20/209 (9%)
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR 292
I+ L +RI V D R+ + + Y L D R ++D +T D+
Sbjct: 982 IVGLQTQGSRIVVSDVRESVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYETTAGGDK 1041
Query: 293 KGSIAVLSCSDRLEDNASPE---CNLTPNCAYHMG-----EIAVSIRKGSFIYKLPADDA 344
G++ ++ C + + A E +L + Y G E+ + + F +P
Sbjct: 1042 FGNLWLVRCPKKASEEADEEGSGAHLIHDRGYLQGTPNRLELMIHV----FTQDIPTSLH 1097
Query: 345 LGDCLASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDH 403
+A + ++ + G+I I +P +S E+ + ++++ +LA PL G DH
Sbjct: 1098 KTQLVAG---GRDILVWTGFQGTIGILVPFVSREDVDFFQSLEMQLASQ--CPPLAGRDH 1152
Query: 404 SEFRSRENPVGVPKILDGDMLSQFLELTS 432
+RS P V ++DGD+ Q+ L++
Sbjct: 1153 LIYRSYYAP--VKGVIDGDLCEQYFLLSN 1179
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1
Length = 1095
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 17/200 (8%)
Query: 243 IAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSI-AVLSC 301
I VGD I + + +E+ D + ++ ++D D + ++ ++ V
Sbjct: 887 IVVGDLMKSISLLIFKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 946
Query: 302 SDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIA 361
S+ D + YH+GE R GS + +LP D T+I
Sbjct: 947 SEGATDEERSRLEVVGE--YHLGEFVNRFRHGSLVMRLPDSDV---------GQIPTVIF 995
Query: 362 STLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP---VGVPKI 418
T+ G I + + ++Y LE +Q L + + G H ++RS N V
Sbjct: 996 GTVNGVIGVIASLPHDQYLFLEKLQTNL--RKVIKGVGGLSHEQWRSFYNEKKTVDAKNF 1053
Query: 419 LDGDMLSQFLELTSTQQEAV 438
LDGD++ FL+L+ + E +
Sbjct: 1054 LDGDLIESFLDLSRNRMEEI 1073
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1
SV=1
Length = 1090
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 17/200 (8%)
Query: 243 IAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSI-AVLSC 301
I VGD I + + +E+ D + ++ ++D D + ++ ++ V
Sbjct: 882 IVVGDLMKSISLLIFKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 941
Query: 302 SDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIA 361
S+ D + YH+GE R GS + +LP D T+I
Sbjct: 942 SEGATDEERSRLEVVGE--YHLGEFVNRFRHGSLVMRLPDSDV---------GQIPTVIF 990
Query: 362 STLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP---VGVPKI 418
T+ G I + + ++Y LE +Q L + + G H ++RS N V
Sbjct: 991 GTVNGVIGVIASLPHDQYLFLEKLQTNL--RKVIKGVGGLSHEQWRSFYNEKKTVDAKNF 1048
Query: 419 LDGDMLSQFLELTSTQQEAV 438
LDGD++ FL+L+ + E +
Sbjct: 1049 LDGDLIESFLDLSRNRMEEI 1068
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 27/219 (12%)
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVL-MDVDTAVVSD 291
++ + RI VGD ++ + Y + I+ D SQ CV +D +T D
Sbjct: 989 VVTINVQGARIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVDYETVACGD 1048
Query: 292 RKGSIAV----LSCSDRLEDNASPECNLTPNC----AYHMGEIAVSIRKGSF---IYKLP 340
+ G+I + S S++++D+ + L A H E+ GS I K+P
Sbjct: 1049 KFGNIFINRLDPSISEKVDDDPTGATILHEKSFLMGAAHKTEMIGHYNIGSVVTSITKIP 1108
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLL 399
+ ++ +T+ G++ +P +SS++ E + ++ + ++ L+
Sbjct: 1109 L----------VAGGRDVLVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDIS--LV 1156
Query: 400 GNDHSEFRSRENPVGVPKILDGDMLSQFLELTSTQQEAV 438
G DH +R P + ++DGD+ F L +Q+A+
Sbjct: 1157 GRDHIAYRGYYVP--IKGVVDGDLCESFSLLPYPKQQAI 1193
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 27/219 (12%)
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVL-MDVDTAVVSD 291
++ + RI VGD ++ + Y + I+ D SQ CV +D +T D
Sbjct: 989 VVTINVQGARIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVDYETVACGD 1048
Query: 292 RKGSIAV----LSCSDRLEDNASPECNLTPNC----AYHMGEIAVSIRKGSF---IYKLP 340
+ G+I + S S++++D+ + L A H E+ GS I K+P
Sbjct: 1049 KFGNIFINRLDPSISEKVDDDPTGATILHEKSFLMGAAHKTEMIGHYNIGSVVTSITKIP 1108
Query: 341 ADDALGDCLASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLL 399
+ ++ +T+ G++ +P +SS++ E + ++ + ++ L+
Sbjct: 1109 L----------VAGGRDVLVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDIS--LV 1156
Query: 400 GNDHSEFRSRENPVGVPKILDGDMLSQFLELTSTQQEAV 438
G DH +R P + ++DGD+ F L +Q+A+
Sbjct: 1157 GRDHIAYRGYYVP--IKGVVDGDLCESFSLLPYPKQQAI 1193
>sp|B0M0P5|DDB1_DICDI DNA damage-binding protein 1 OS=Dictyostelium discoideum GN=repE PE=1
SV=1
Length = 1181
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 17/214 (7%)
Query: 225 AVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV 284
+V + MI+ L + I VGD + D LEQI +P + +++
Sbjct: 956 SVHKGHTMILKLASRGHFILVGDMMKSMSLLVEQSDG-SLEQIARNPQPIWIRSVAMIND 1014
Query: 285 DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDA 344
D + ++ + V+ ++ + E L YH+GE S+R GS + +LP D
Sbjct: 1015 DYFIGAEASNNFIVVKKNNDSTNELEREL-LDSVGHYHIGESINSMRHGSLV-RLPDSD- 1071
Query: 345 LGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHS 404
+ TI+ +++ GSI + IS E++ +Q ++ + + G H
Sbjct: 1072 --------QPIIPTILYASVNGSIGVVASISEEDFIFFSKLQK--GLNQVVRGVGGFSHE 1121
Query: 405 EFRSREN---PVGVPKILDGDMLSQFLELTSTQQ 435
+R+ N + +DGD++ FL+L Q
Sbjct: 1122 TWRAFSNDHHTIDSKNFIDGDLIETFLDLKYESQ 1155
>sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3
SV=1
Length = 1225
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 84/203 (41%), Gaps = 12/203 (5%)
Query: 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR 292
I+ L +RI V D R+ + + Y L D R ++D +T D+
Sbjct: 982 IVGLQTQGSRIVVSDVRESVTYVVYKYQDNILIPFVDDSVSRWTTSTTMVDYETVAGGDK 1041
Query: 293 KGSIAVLSCSDRLEDNASPE---CNLTPNCAY-HMGEIAVSIRKGSFIYKLPADDALGDC 348
G++ ++ C + + A + +L Y H + + ++ +P
Sbjct: 1042 FGNLWLVRCPKKASEEADEDGSGAHLIHERGYLHGAPNRLDLMIHTYTQDIPTSLHKTQL 1101
Query: 349 LASFESSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFR 407
+A + ++ + G+I + +P +S E+ + + ++ +LA PL G DH +R
Sbjct: 1102 VAG---GRDILVWTGFQGTIGMLVPFVSREDVDFFQNLEMQLASQ--CPPLAGRDHLIYR 1156
Query: 408 SRENPVGVPKILDGDMLSQFLEL 430
S P V ++DGD+ + L
Sbjct: 1157 SYYAP--VKGVIDGDLCEMYFLL 1177
>sp|A1C3U1|CFT1_ASPCL Protein cft1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=cft1 PE=3 SV=1
Length = 1401
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 245 VGDCRDGILFYSYHEDARKLEQIYCD-PSQRLVADCVLMDVDT--AVVSDRKGSIAVLSC 301
VGD GI F Y E+ K+ D +VA L D D +V+D ++ VL
Sbjct: 1179 VGDAFKGIWFAGYSEEPYKMSLFGKDLEYPEVVAADFLPDGDKLFILVADSDCNLHVLQY 1238
Query: 302 S--DRLEDNASPECNLTPNCAYHMGEIAVSIR---KGSFIYKLPADDALGDCLASFESSQ 356
D + N L +HMG ++ + + Y++P+ D+ + + Q
Sbjct: 1239 EPEDPMSSNGD---KLLVRSKFHMGHFTSTLTLLPRTTASYEIPSADSDSMEVDPRITPQ 1295
Query: 357 TTIIASTLLGSIVIFIPISSEEYELLEAVQARLAI---HPLTAPLLGNDHSEFRSRENPV 413
+I S GSI I I E Y L A+Q++LA HP G + +R+ E+
Sbjct: 1296 QVLITSQS-GSIGIVTSIPEESYRRLSALQSQLANTVEHP-----CGLNPRAYRAIESDG 1349
Query: 414 GVPK-ILDGDMLSQFLELTSTQQEAVLSFTLGSFD-TIKA 451
+ +LDG++L Q+L + S Q+ ++ +G+ + IKA
Sbjct: 1350 TAGRGMLDGNLLYQWLSM-SKQRRMEIAARVGAHEWEIKA 1388
>sp|Q6P6Z0|DDB1_XENLA DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1
Length = 1140
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 103/250 (41%), Gaps = 24/250 (9%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 909 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 968
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 969 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1019
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL VQ RL ++ + + H+E
Sbjct: 1020 TSPPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTE 1079
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQ-QEAVLSFTLGSFDTIKASSKLPPSSPIPVN 464
R E G +DGD++ FL+++ + QE + + + +K + + +
Sbjct: 1080 -RKTEPATG---FIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKRETTVD-----DLI 1130
Query: 465 QVVQLLERVH 474
+VV+ L R+H
Sbjct: 1131 KVVEELTRIH 1140
>sp|Q04693|RSE1_YEAST Pre-mRNA-splicing factor RSE1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RSE1 PE=1 SV=1
Length = 1361
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 398 LLGNDHSEFRSRENPVGVPKILDGDMLSQFLELTSTQQE 436
+LG DH E+RS PV K++DGD+ FL L+ +QE
Sbjct: 1299 ILGRDHQEYRSYYAPVR--KVIDGDLCENFLRLSLNEQE 1335
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2
Length = 1140
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 101/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 909 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 968
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 969 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGEAST 1022
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1023 P---TQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1079
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1080 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1131
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1132 VVEELTRIH 1140
>sp|Q9XYZ5|DDB1_DROME DNA damage-binding protein 1 OS=Drosophila melanogaster GN=pic PE=1
SV=1
Length = 1140
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 16/232 (6%)
Query: 204 AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK 263
AG +V + N + +R + + L A I VGD I + +
Sbjct: 883 AGIGSFVRLYEWTNEKELRMECNIQNMIAALFLKAKGDFILVGDLMRSITLLQHKQMEGI 942
Query: 264 LEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCA-YH 322
+I D + + ++D DT + S+ G++ V C E L P A +H
Sbjct: 943 FVEIARDCEPKWMRAVEILDDDTFLGSETNGNLFV--CQKDSAATTDEERQLLPELARFH 1000
Query: 323 MGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELL 382
+G+ R GS + + +G+ ++ T G+I I I + Y+ L
Sbjct: 1001 LGDTVNVFRHGSLVMQ-----NVGERTTPINGC---VLYGTCNGAIGIVTQIPQDFYDFL 1052
Query: 383 EAVQARLAIHPLTAPLLGNDHSEFRSRENPVGVP---KILDGDMLSQFLELT 431
++ RL + + +H+ +R+ + V +DGD++ FL+L+
Sbjct: 1053 HGLEERLK--KIIKSVGKIEHTYYRNFQINSKVEPSEGFIDGDLIESFLDLS 1102
>sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=2 SV=1
Length = 1140
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 909 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 968
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 969 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1019
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1020 TSTPTQGSVLLGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1079
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1080 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1131
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1132 VVEELTRIH 1140
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1
Length = 1140
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 909 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 968
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 969 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1019
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1020 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1079
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1080 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1131
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1132 VVEELTRIH 1140
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 909 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 968
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 969 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1019
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1020 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1079
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1080 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1131
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1132 VVEELTRIH 1140
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1
Length = 1140
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 909 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 968
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 969 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1019
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1020 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1079
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1080 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1131
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1132 VVEELTRIH 1140
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1
SV=1
Length = 1140
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 909 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 968
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L +H+GE GS + + LG+
Sbjct: 969 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-----NLGE--- 1019
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1020 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1079
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQ 465
R E G +DGD++ FL+++ + + V++ + S ++ + +
Sbjct: 1080 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVA----NLQYDDGSGMKREATADDLIK 1131
Query: 466 VVQLLERVH 474
VV+ L R+H
Sbjct: 1132 VVEELTRIH 1140
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 24/250 (9%)
Query: 231 FMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290
M + L I VGD +L +Y E+I D + ++ ++D D + +
Sbjct: 909 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA 968
Query: 291 DRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350
+ ++ V D +L H+GE GS + + LG+
Sbjct: 969 ENAFNLFVCQ-KDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQ-----NLGE--- 1019
Query: 351 SFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARL-----AIHPLTAPLLGNDHSE 405
+ +Q +++ T+ G I + +S Y LL +Q RL ++ + + H+E
Sbjct: 1020 TSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE 1079
Query: 406 FRSRENPVGVPKILDGDMLSQFLELTSTQ-QEAVLSFTLGSFDTIKASSKLPPSSPIPVN 464
R E G +DGD++ FL+++ + QE V + + +K + + +
Sbjct: 1080 -RKTEPATG---FIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVD-----DLI 1130
Query: 465 QVVQLLERVH 474
++V+ L R+H
Sbjct: 1131 KIVEELTRIH 1140
>sp|Q4WCL1|CFT1_ASPFU Protein cft1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=cft1 PE=3 SV=2
Length = 1401
Score = 35.8 bits (81), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 15/195 (7%)
Query: 245 VGDCRDGILFYSYHEDARKLEQIYCDPSQ-RLVADCVLMDVDT--AVVSDRKGSIAVLSC 301
+GD G+ F Y E+ K+ D +VA L D D +V+D ++ VL
Sbjct: 1179 MGDAVKGLWFAGYSEEPYKMSLFGKDQGYLEVVAAEFLPDGDKLFILVADSDCNLHVLQY 1238
Query: 302 SDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYK--LPADDALGDCLASFESSQT-- 357
D + +S L +HMG A ++ + + + + ++ A+ + + SQT
Sbjct: 1239 -DPEDPKSSNGDRLLARSKFHMGHFATTM---TLLPRTMVSSEKAMANPDSMEIDSQTIS 1294
Query: 358 -TIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVGVP 416
++ ++ GS+ I + E Y L A+Q++LA + L P G + +R+ E+
Sbjct: 1295 QQVLITSQSGSVGIVTSVPEESYRRLSALQSQLA-NSLEHP-CGLNPRAYRAVESDGTAG 1352
Query: 417 K-ILDGDMLSQFLEL 430
+ +LDG++L Q+L++
Sbjct: 1353 RGMLDGNLLYQWLDM 1367
>sp|A1DB13|CFT1_NEOFI Protein cft1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=cft1 PE=3 SV=1
Length = 1400
Score = 35.8 bits (81), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 15/195 (7%)
Query: 245 VGDCRDGILFYSYHEDARKLEQIYCDPSQ-RLVADCVLMDVDT--AVVSDRKGSIAVLSC 301
+GD G+ F Y E+ K+ D +VA L D D +V+D ++ VL
Sbjct: 1178 MGDAVKGLWFAGYSEEPYKMSLFGKDQGYLEVVAAEFLPDGDKLFILVADSDCNLHVLQY 1237
Query: 302 SDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYK--LPADDALGDCLASFESSQT-- 357
D + +S L +HMG A ++ + + + + ++ A+ D + SQT
Sbjct: 1238 -DPEDPKSSNGDRLLARSKFHMGHFATTM---TLLPRTMVSSEKAMADPDSMEIDSQTIS 1293
Query: 358 -TIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVGVP 416
++ ++ GS+ I + E Y L A+Q++L + L P G + +R+ E+
Sbjct: 1294 QQVLITSQSGSVGIVTSVPEESYRRLSALQSQLT-NSLEHP-CGLNPRAYRAVESDGTAG 1351
Query: 417 K-ILDGDMLSQFLEL 430
+ +LDG++L Q+L++
Sbjct: 1352 RGMLDGNLLYQWLDM 1366
>sp|Q6CXH8|RSE1_KLULA Pre-mRNA-splicing factor RSE1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=RSE1 PE=3 SV=1
Length = 1269
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 31/161 (19%)
Query: 241 TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300
T +AVGD R+ + + Y D + D +R V +DV + + DR G+ VL
Sbjct: 1017 TMLAVGDIRESVTIFKYDIDNNSFIGVADDIVKRHVTTVKFIDVSSVIGGDRFGNCWVLR 1076
Query: 301 C---SDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFE---- 353
SD + C T HM + D FE
Sbjct: 1077 VNYESDTRVASNIKACQYTLETLCHM--------------------YMNDTPMKFEIVNH 1116
Query: 354 ---SSQTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLA 390
S + I+ L G+I F+P I+ +E +L ++ Q+ A
Sbjct: 1117 MNMSDRPAILWIGLQGTIGCFVPLITRKEQQLYQSFQSTYA 1157
>sp|Q9M3H5|HMA1_ARATH Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic
OS=Arabidopsis thaliana GN=HMA1 PE=1 SV=2
Length = 819
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 192 ICPYL-DRYFLASAGNAFYVCGFP----NDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVG 246
+CPYL ++ S NAF + GFP + + + A G+ +++ A F + +G
Sbjct: 141 VCPYLAPEPYIKSLQNAFMIVGFPLVGVSASLDALMDIAGGKVNIHVLMALAAFASVFMG 200
Query: 247 DCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVV 289
+ +G L + A E+ + S V + + D+A++
Sbjct: 201 NALEGGLLLAMFNLAHIAEEFFTSRSMVDVKELKESNPDSALL 243
>sp|Q6CE48|IND1_YARLI Iron-sulfur protein IND1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=IND1 PE=1 SV=1
Length = 312
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 379 YELLEAVQARLAIHPLTAPLLGNDHSE--FRSRENPVGVPK 417
+ L+ +Q +AI P+ N HS RS ENP+G+PK
Sbjct: 4 FRLIAPIQRSIAIISRLQPITANFHSSPALRSHENPLGIPK 44
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,642,711
Number of Sequences: 539616
Number of extensions: 6616881
Number of successful extensions: 15009
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 14952
Number of HSP's gapped (non-prelim): 59
length of query: 478
length of database: 191,569,459
effective HSP length: 121
effective length of query: 357
effective length of database: 126,275,923
effective search space: 45080504511
effective search space used: 45080504511
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)