Query 011732
Match_columns 478
No_of_seqs 127 out of 589
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:37:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1897 Damage-specific DNA bi 100.0 6.8E-68 1.5E-72 567.7 38.4 381 1-473 700-1092(1096)
2 KOG1896 mRNA cleavage and poly 100.0 1.7E-64 3.7E-69 549.0 32.8 373 1-446 939-1349(1366)
3 PF03178 CPSF_A: CPSF A subuni 100.0 4.3E-57 9.2E-62 458.6 36.5 311 43-429 1-321 (321)
4 KOG1898 Splicing factor 3b, su 100.0 1.1E-55 2.3E-60 475.6 35.4 370 5-477 763-1204(1205)
5 COG5161 SFT1 Pre-mRNA cleavage 100.0 4.7E-52 1E-56 438.2 30.5 388 3-475 896-1318(1319)
6 KOG0318 WD40 repeat stress pro 98.1 0.0004 8.6E-09 72.8 21.2 196 12-301 402-601 (603)
7 PF03178 CPSF_A: CPSF A subuni 97.8 0.013 2.8E-07 59.5 25.8 209 8-300 14-263 (321)
8 cd00200 WD40 WD40 domain, foun 97.8 0.034 7.3E-07 52.3 26.7 191 18-302 54-249 (289)
9 PLN00181 protein SPA1-RELATED; 97.3 0.068 1.5E-06 61.2 25.7 200 17-301 577-792 (793)
10 PRK11028 6-phosphogluconolacto 97.3 0.15 3.3E-06 51.6 25.3 237 8-332 72-327 (330)
11 KOG1036 Mitotic spindle checkp 97.3 0.063 1.4E-06 53.4 21.0 190 15-302 13-207 (323)
12 cd00200 WD40 WD40 domain, foun 97.3 0.17 3.8E-06 47.4 27.9 193 16-302 10-207 (289)
13 KOG0282 mRNA splicing factor [ 97.0 0.0078 1.7E-07 62.8 12.5 178 43-303 279-463 (503)
14 KOG0306 WD40-repeat-containing 97.0 0.13 2.7E-06 56.8 21.6 202 43-299 393-619 (888)
15 PRK11028 6-phosphogluconolacto 96.7 0.39 8.5E-06 48.6 22.3 189 12-282 122-328 (330)
16 KOG0315 G-protein beta subunit 96.7 0.26 5.7E-06 48.0 18.8 110 188-300 169-286 (311)
17 PTZ00420 coronin; Provisional 96.7 1 2.3E-05 49.6 26.0 116 185-303 166-294 (568)
18 KOG1539 WD repeat protein [Gen 96.5 0.39 8.5E-06 53.5 21.3 117 176-303 65-191 (910)
19 KOG0291 WD40-repeat-containing 96.4 1.2 2.6E-05 49.5 24.0 195 18-303 353-551 (893)
20 PLN00181 protein SPA1-RELATED; 96.4 2.6 5.7E-05 48.3 31.6 195 17-302 534-738 (793)
21 PF10282 Lactonase: Lactonase, 96.0 2.1 4.6E-05 43.9 23.4 183 16-280 144-344 (345)
22 KOG0646 WD40 repeat protein [G 95.9 0.83 1.8E-05 47.9 18.9 62 181-247 76-142 (476)
23 KOG0647 mRNA export protein (c 95.9 1.7 3.7E-05 43.5 20.0 196 15-303 27-229 (347)
24 KOG1273 WD40 repeat protein [G 95.8 0.58 1.3E-05 47.0 16.3 124 186-325 65-195 (405)
25 KOG0310 Conserved WD40 repeat- 95.7 2.8 6E-05 44.4 21.8 191 17-300 112-307 (487)
26 KOG0278 Serine/threonine kinas 95.6 0.14 3.1E-06 49.7 11.3 119 8-215 177-298 (334)
27 KOG0283 WD40 repeat-containing 95.4 0.72 1.6E-05 51.3 17.1 173 44-304 390-578 (712)
28 KOG2048 WD40 repeat protein [G 95.4 5.4 0.00012 43.9 25.5 199 7-301 16-232 (691)
29 KOG2110 Uncharacterized conser 95.3 4 8.6E-05 41.9 23.4 137 44-259 106-249 (391)
30 KOG2106 Uncharacterized conser 95.3 5 0.00011 42.9 23.5 202 9-300 401-624 (626)
31 TIGR03866 PQQ_ABC_repeats PQQ- 95.2 3.1 6.8E-05 40.2 25.6 66 10-86 67-133 (300)
32 KOG1036 Mitotic spindle checkp 95.1 1.8 3.9E-05 43.4 17.3 156 41-281 113-282 (323)
33 KOG1273 WD40 repeat protein [G 95.0 1 2.2E-05 45.3 15.3 208 9-303 100-323 (405)
34 KOG0296 Angio-associated migra 94.9 1.2 2.6E-05 45.5 15.7 64 178-244 319-384 (399)
35 KOG1446 Histone H3 (Lys4) meth 94.8 0.33 7.2E-06 48.5 11.4 83 8-113 176-262 (311)
36 KOG2106 Uncharacterized conser 94.8 4.5 9.8E-05 43.2 19.9 147 20-258 205-366 (626)
37 KOG0289 mRNA splicing factor [ 94.8 5.5 0.00012 41.8 20.2 78 185-266 388-468 (506)
38 KOG0772 Uncharacterized conser 94.5 4.1 8.9E-05 43.6 18.9 165 176-374 304-487 (641)
39 KOG0283 WD40 repeat-containing 94.4 1 2.2E-05 50.2 14.8 159 17-258 411-576 (712)
40 KOG2048 WD40 repeat protein [G 94.3 2.1 4.6E-05 46.9 16.7 103 197-302 441-548 (691)
41 KOG2096 WD40 repeat protein [G 94.2 7 0.00015 39.6 18.8 209 17-303 88-309 (420)
42 PTZ00420 coronin; Provisional 94.1 2.4 5.1E-05 46.8 17.2 84 11-113 163-248 (568)
43 PTZ00421 coronin; Provisional 94.0 11 0.00024 40.9 24.9 114 185-303 167-291 (493)
44 KOG2321 WD40 repeat protein [G 93.9 2.2 4.7E-05 46.1 15.6 99 200-302 149-258 (703)
45 KOG0289 mRNA splicing factor [ 93.7 1.6 3.5E-05 45.6 13.9 56 41-115 366-421 (506)
46 KOG0650 WD40 repeat nucleolar 93.5 1.6 3.4E-05 47.4 13.7 108 185-300 565-678 (733)
47 KOG0278 Serine/threonine kinas 93.2 2 4.3E-05 42.1 12.7 119 178-304 176-299 (334)
48 PF08662 eIF2A: Eukaryotic tra 93.1 2.6 5.7E-05 39.7 13.7 85 5-113 47-133 (194)
49 KOG0291 WD40-repeat-containing 93.1 18 0.0004 40.6 26.2 123 179-302 89-219 (893)
50 PF13360 PQQ_2: PQQ-like domai 93.0 5.5 0.00012 37.6 16.0 99 196-303 122-231 (238)
51 KOG0299 U3 snoRNP-associated p 92.9 4.3 9.4E-05 42.7 15.5 135 184-331 284-432 (479)
52 KOG0274 Cdc4 and related F-box 92.8 11 0.00024 41.4 19.7 118 178-303 362-483 (537)
53 KOG0299 U3 snoRNP-associated p 92.7 1.7 3.6E-05 45.7 12.3 112 183-302 241-356 (479)
54 COG2706 3-carboxymuconate cycl 92.6 7.1 0.00015 40.0 16.3 137 8-225 183-331 (346)
55 KOG1517 Guanine nucleotide bin 92.5 21 0.00046 41.7 21.3 227 17-332 1066-1312(1387)
56 KOG0310 Conserved WD40 repeat- 92.4 2.5 5.5E-05 44.6 13.3 116 9-212 190-306 (487)
57 PF13360 PQQ_2: PQQ-like domai 92.3 10 0.00022 35.8 18.6 21 44-64 3-23 (238)
58 KOG2110 Uncharacterized conser 92.2 16 0.00034 37.8 18.8 145 175-335 68-226 (391)
59 KOG0646 WD40 repeat protein [G 92.0 1.1 2.4E-05 47.0 10.1 108 191-305 44-156 (476)
60 KOG0305 Anaphase promoting com 92.0 14 0.0003 39.9 18.6 231 15-303 217-462 (484)
61 KOG0308 Conserved WD40 repeat- 91.7 7.3 0.00016 42.8 16.0 114 186-303 171-286 (735)
62 KOG1539 WD repeat protein [Gen 91.7 28 0.00061 39.5 24.7 111 185-301 201-319 (910)
63 KOG0279 G protein beta subunit 91.6 11 0.00023 37.6 15.8 78 180-257 227-312 (315)
64 KOG1274 WD40 repeat protein [G 91.6 3.3 7.2E-05 47.0 13.7 118 13-214 136-262 (933)
65 KOG3881 Uncharacterized conser 91.6 3.2 6.9E-05 42.9 12.6 133 184-328 103-250 (412)
66 KOG0288 WD40 repeat protein Ti 91.2 2.5 5.5E-05 43.9 11.4 82 9-113 335-417 (459)
67 KOG1897 Damage-specific DNA bi 91.1 36 0.00077 39.6 25.3 165 175-372 758-940 (1096)
68 PF10282 Lactonase: Lactonase, 90.2 24 0.00051 36.1 28.1 234 8-330 78-343 (345)
69 KOG0282 mRNA splicing factor [ 90.1 3.3 7.1E-05 43.8 11.4 199 8-299 292-502 (503)
70 KOG2111 Uncharacterized conser 90.1 24 0.00051 35.9 21.8 191 28-303 59-257 (346)
71 PTZ00421 coronin; Provisional 89.6 31 0.00068 37.5 19.1 77 17-114 170-246 (493)
72 KOG0315 G-protein beta subunit 89.6 14 0.0003 36.4 14.3 109 187-303 41-155 (311)
73 KOG3881 Uncharacterized conser 89.5 2.6 5.6E-05 43.5 9.9 114 18-215 205-321 (412)
74 PF08596 Lgl_C: Lethal giant l 89.1 33 0.00071 36.2 19.9 102 43-215 106-244 (395)
75 KOG0266 WD40 repeat-containing 88.6 38 0.00082 36.2 25.5 114 184-302 244-364 (456)
76 TIGR03300 assembly_YfgL outer 88.3 33 0.00072 35.2 20.1 93 200-301 244-337 (377)
77 PHA03098 kelch-like protein; P 87.8 31 0.00068 37.4 17.8 77 206-285 406-489 (534)
78 KOG2394 WD40 protein DMR-N9 [G 87.7 11 0.00023 40.8 13.2 87 187-281 291-382 (636)
79 KOG2445 Nuclear pore complex c 87.5 11 0.00024 38.1 12.4 82 17-114 114-208 (361)
80 PF07433 DUF1513: Protein of u 87.4 34 0.00073 34.8 16.2 82 9-90 91-184 (305)
81 COG2706 3-carboxymuconate cycl 87.3 38 0.00082 34.8 24.1 119 204-330 211-342 (346)
82 KOG0263 Transcription initiati 87.2 8.6 0.00019 42.9 12.6 70 17-113 537-607 (707)
83 PHA02713 hypothetical protein; 87.1 53 0.0011 36.2 19.3 94 207-303 433-532 (557)
84 KOG3621 WD40 repeat-containing 86.7 5.7 0.00012 44.0 10.9 174 24-283 42-222 (726)
85 PF14783 BBS2_Mid: Ciliary BBS 86.4 14 0.00029 31.9 10.9 37 178-214 34-71 (111)
86 KOG4441 Proteins containing BT 86.3 42 0.0009 37.2 17.8 115 176-294 407-533 (571)
87 KOG1274 WD40 repeat protein [G 85.7 74 0.0016 36.6 22.8 120 179-302 91-218 (933)
88 KOG0318 WD40 repeat stress pro 85.6 14 0.0003 39.8 12.8 130 182-331 439-580 (603)
89 KOG0319 WD40-repeat-containing 85.6 24 0.00052 39.4 14.9 113 185-303 322-443 (775)
90 PF14781 BBS2_N: Ciliary BBSom 85.5 10 0.00022 33.8 10.0 68 23-114 6-82 (136)
91 KOG0643 Translation initiation 85.5 41 0.0009 33.5 23.2 188 179-407 86-296 (327)
92 KOG4441 Proteins containing BT 85.4 47 0.001 36.8 17.6 106 182-294 376-486 (571)
93 KOG1407 WD40 repeat protein [F 85.0 24 0.00052 35.0 13.1 126 44-256 87-217 (313)
94 KOG0649 WD40 repeat protein [G 84.8 40 0.00086 33.2 14.4 122 176-302 52-186 (325)
95 PF11768 DUF3312: Protein of u 84.7 6.6 0.00014 42.6 10.1 83 3-113 247-329 (545)
96 KOG0293 WD40 repeat-containing 84.7 24 0.00051 37.1 13.6 198 12-303 266-471 (519)
97 KOG2055 WD40 repeat protein [G 84.6 25 0.00055 37.3 13.9 137 182-331 209-351 (514)
98 PF00780 CNH: CNH domain; Int 84.5 13 0.00027 36.4 11.6 60 197-258 105-165 (275)
99 PF12234 Rav1p_C: RAVE protein 84.2 34 0.00074 38.3 15.6 124 17-214 31-156 (631)
100 KOG0306 WD40-repeat-containing 84.0 55 0.0012 37.0 16.7 69 185-257 148-218 (888)
101 TIGR03866 PQQ_ABC_repeats PQQ- 84.0 41 0.00089 32.2 29.0 81 8-113 23-103 (300)
102 COG5276 Uncharacterized conser 83.7 52 0.0011 33.4 15.0 124 177-304 77-201 (370)
103 KOG0276 Vesicle coat complex C 83.4 80 0.0017 35.1 21.7 191 17-302 15-215 (794)
104 KOG0277 Peroxisomal targeting 83.3 32 0.0007 34.0 13.2 69 79-216 21-93 (311)
105 TIGR03300 assembly_YfgL outer 82.8 60 0.0013 33.3 17.4 49 44-113 75-123 (377)
106 KOG1898 Splicing factor 3b, su 82.7 14 0.00031 42.9 12.0 190 56-304 813-1006(1205)
107 KOG0266 WD40 repeat-containing 82.5 27 0.00059 37.3 14.0 118 184-305 201-321 (456)
108 KOG0294 WD40 repeat-containing 81.1 68 0.0015 32.7 16.4 58 245-302 164-237 (362)
109 KOG0273 Beta-transducin family 80.7 57 0.0012 34.8 14.8 111 186-303 235-348 (524)
110 PRK11138 outer membrane biogen 79.7 81 0.0017 32.7 19.6 64 236-302 290-353 (394)
111 KOG0269 WD40 repeat-containing 79.7 10 0.00023 42.4 9.5 114 16-215 134-251 (839)
112 PF00780 CNH: CNH domain; Int 79.6 63 0.0014 31.4 17.4 38 178-216 130-167 (275)
113 KOG0268 Sof1-like rRNA process 79.6 17 0.00037 37.5 10.3 114 179-301 140-258 (433)
114 KOG1645 RING-finger-containing 79.3 9 0.0002 39.9 8.3 73 17-114 195-267 (463)
115 KOG0290 Conserved WD40 repeat- 79.0 57 0.0012 32.9 13.5 116 182-302 92-227 (364)
116 PHA02713 hypothetical protein; 79.0 1E+02 0.0023 33.9 17.3 81 207-290 368-470 (557)
117 KOG0305 Anaphase promoting com 78.9 82 0.0018 34.1 15.8 53 43-114 196-248 (484)
118 PF07433 DUF1513: Protein of u 78.3 36 0.00077 34.6 12.2 85 12-113 1-85 (305)
119 PF14783 BBS2_Mid: Ciliary BBS 78.1 21 0.00044 30.8 9.0 64 276-373 2-70 (111)
120 PF04053 Coatomer_WDAD: Coatom 78.0 1E+02 0.0022 33.0 16.9 64 188-260 110-175 (443)
121 KOG4649 PQQ (pyrrolo-quinoline 77.9 33 0.00072 34.1 11.3 68 19-113 14-81 (354)
122 KOG0772 Uncharacterized conser 77.8 58 0.0013 35.2 13.9 110 188-301 366-486 (641)
123 KOG0286 G-protein beta subunit 77.4 85 0.0018 31.7 15.3 122 176-302 42-174 (343)
124 KOG1034 Transcriptional repres 77.3 30 0.00066 35.3 11.1 115 185-303 134-279 (385)
125 KOG0294 WD40 repeat-containing 77.2 90 0.0019 31.9 18.1 122 197-332 180-305 (362)
126 KOG0316 Conserved WD40 repeat- 77.1 45 0.00098 32.7 11.9 114 200-332 74-191 (307)
127 KOG4227 WD40 repeat protein [G 76.8 61 0.0013 33.9 13.3 29 276-304 296-324 (609)
128 KOG2919 Guanine nucleotide-bin 76.2 49 0.0011 33.8 12.2 53 45-114 134-188 (406)
129 PF14761 HPS3_N: Hermansky-Pud 76.0 10 0.00022 36.4 7.3 72 177-250 126-207 (215)
130 KOG0274 Cdc4 and related F-box 75.7 1.3E+02 0.0029 33.1 19.3 110 185-303 290-401 (537)
131 KOG4378 Nuclear protein COP1 [ 75.7 46 0.001 35.8 12.4 81 11-114 160-240 (673)
132 PF15390 DUF4613: Domain of un 75.1 29 0.00062 38.2 11.0 98 8-113 329-431 (671)
133 PF02239 Cytochrom_D1: Cytochr 74.3 1.1E+02 0.0025 31.7 19.8 72 6-88 26-98 (369)
134 KOG4378 Nuclear protein COP1 [ 74.3 1.3E+02 0.0029 32.5 16.3 96 179-282 205-302 (673)
135 PF15390 DUF4613: Domain of un 73.3 12 0.00027 40.9 7.8 67 180-247 149-220 (671)
136 KOG2139 WD40 repeat protein [G 71.3 30 0.00066 35.8 9.6 163 17-255 100-265 (445)
137 cd00216 PQQ_DH Dehydrogenases 70.4 1.6E+02 0.0035 31.7 19.0 45 21-65 222-277 (488)
138 PLN02153 epithiospecifier prot 69.6 1.3E+02 0.0029 30.4 18.3 36 253-288 218-256 (341)
139 KOG0319 WD40-repeat-containing 69.2 1.1E+02 0.0025 34.4 14.0 191 17-301 21-221 (775)
140 KOG0275 Conserved WD40 repeat- 68.4 1.4E+02 0.003 30.6 13.3 200 10-303 206-424 (508)
141 PF08728 CRT10: CRT10; InterP 67.1 21 0.00045 40.4 8.1 74 228-301 161-245 (717)
142 KOG3914 WD repeat protein WDR4 66.2 60 0.0013 33.8 10.6 107 196-304 73-183 (390)
143 PF05096 Glu_cyclase_2: Glutam 66.2 1.5E+02 0.0032 29.6 17.7 141 41-266 65-209 (264)
144 KOG2321 WD40 repeat protein [G 66.2 18 0.0004 39.4 7.2 86 12-113 130-258 (703)
145 KOG0271 Notchless-like WD40 re 65.8 1.8E+02 0.0039 30.5 15.4 114 186-303 115-236 (480)
146 PF02239 Cytochrom_D1: Cytochr 65.5 18 0.00039 37.7 7.0 50 8-63 70-119 (369)
147 PHA03098 kelch-like protein; P 65.1 2.1E+02 0.0045 31.0 16.4 54 26-86 342-397 (534)
148 KOG0296 Angio-associated migra 64.9 1.8E+02 0.0039 30.2 16.3 115 179-303 57-179 (399)
149 KOG2111 Uncharacterized conser 63.9 1.8E+02 0.0038 29.8 19.7 43 179-223 87-129 (346)
150 PF04053 Coatomer_WDAD: Coatom 63.8 1.5E+02 0.0033 31.7 13.8 161 9-259 102-263 (443)
151 KOG1408 WD40 repeat protein [F 61.5 54 0.0012 36.9 9.7 114 186-303 596-714 (1080)
152 PRK11138 outer membrane biogen 61.3 2.1E+02 0.0045 29.7 17.2 65 235-302 330-394 (394)
153 KOG2394 WD40 protein DMR-N9 [G 60.4 1.5E+02 0.0034 32.3 12.6 109 187-301 124-249 (636)
154 KOG1446 Histone H3 (Lys4) meth 60.2 2E+02 0.0043 29.2 24.9 197 15-302 14-217 (311)
155 TIGR02658 TTQ_MADH_Hv methylam 59.2 2.3E+02 0.0049 29.5 28.1 56 9-65 40-98 (352)
156 PF14655 RAB3GAP2_N: Rab3 GTPa 58.9 64 0.0014 34.3 9.7 45 53-113 42-97 (415)
157 KOG0271 Notchless-like WD40 re 58.9 1.1E+02 0.0025 31.9 11.0 71 18-114 370-440 (480)
158 KOG0650 WD40 repeat nucleolar 58.6 3E+02 0.0064 30.7 18.1 115 181-303 516-638 (733)
159 KOG0302 Ribosome Assembly prot 57.9 95 0.0021 32.4 10.2 86 5-114 244-333 (440)
160 KOG2096 WD40 repeat protein [G 57.8 1.8E+02 0.0038 29.9 11.9 54 12-72 130-192 (420)
161 KOG1896 mRNA cleavage and poly 57.8 3.9E+02 0.0085 32.3 16.1 83 177-261 1129-1216(1366)
162 COG3490 Uncharacterized protei 57.4 27 0.00059 35.2 6.1 74 17-90 163-247 (366)
163 PF08662 eIF2A: Eukaryotic tra 56.9 76 0.0017 29.7 9.1 41 17-61 102-142 (194)
164 KOG0268 Sof1-like rRNA process 56.8 1.4E+02 0.003 31.1 11.1 87 205-301 250-344 (433)
165 KOG0640 mRNA cleavage stimulat 55.3 60 0.0013 33.0 8.2 74 16-113 217-291 (430)
166 KOG0643 Translation initiation 54.3 2.4E+02 0.0052 28.3 15.1 55 44-114 74-129 (327)
167 KOG0281 Beta-TrCP (transducin 54.0 2.5E+02 0.0054 29.2 12.3 108 191-304 364-479 (499)
168 KOG0273 Beta-transducin family 53.8 3.1E+02 0.0068 29.5 19.6 57 10-66 230-320 (524)
169 KOG0645 WD40 repeat protein [G 52.4 2.6E+02 0.0056 28.1 23.1 245 7-369 50-306 (312)
170 KOG0279 G protein beta subunit 52.3 2.6E+02 0.0057 28.1 20.3 112 185-301 191-312 (315)
171 KOG1407 WD40 repeat protein [F 50.6 2.7E+02 0.0059 27.8 16.3 170 9-270 100-272 (313)
172 PF14727 PHTB1_N: PTHB1 N-term 50.4 3.4E+02 0.0074 28.9 24.3 154 178-335 63-249 (418)
173 KOG0640 mRNA cleavage stimulat 47.0 1.2E+02 0.0025 31.1 8.7 139 183-331 169-312 (430)
174 KOG1332 Vesicle coat complex C 46.2 2.2E+02 0.0048 28.2 10.2 80 178-261 47-137 (299)
175 KOG0293 WD40 repeat-containing 46.0 4E+02 0.0086 28.4 14.3 114 185-302 394-513 (519)
176 KOG3617 WD40 and TPR repeat-co 45.7 96 0.0021 35.8 8.6 67 189-259 62-132 (1416)
177 KOG4328 WD40 protein [Function 45.6 1.6E+02 0.0035 31.4 9.8 118 183-303 183-310 (498)
178 PF06433 Me-amine-dh_H: Methyl 44.8 3.8E+02 0.0082 27.8 13.1 59 11-70 32-93 (342)
179 KOG2079 Vacuolar assembly/sort 44.0 63 0.0014 38.0 7.1 75 183-259 127-206 (1206)
180 PF05694 SBP56: 56kDa selenium 44.0 4.2E+02 0.0091 28.5 12.7 117 204-330 220-362 (461)
181 KOG0276 Vesicle coat complex C 43.8 5.2E+02 0.011 29.1 18.8 54 3-62 42-95 (794)
182 PF12341 DUF3639: Protein of u 43.4 32 0.00069 21.9 2.7 22 65-90 1-22 (27)
183 KOG0313 Microtubule binding pr 43.1 1.9E+02 0.0041 30.3 9.7 80 11-113 296-376 (423)
184 PF08450 SGL: SMP-30/Gluconola 43.1 3E+02 0.0065 26.1 16.2 113 183-302 37-164 (246)
185 PF10395 Utp8: Utp8 family; I 41.7 3.6E+02 0.0078 30.5 12.4 36 53-88 59-95 (670)
186 PF14761 HPS3_N: Hermansky-Pud 40.9 3.4E+02 0.0074 26.2 13.8 85 11-114 55-164 (215)
187 KOG0771 Prolactin regulatory e 39.1 1.7E+02 0.0038 30.6 8.9 68 232-301 283-355 (398)
188 KOG0292 Vesicle coat complex C 39.0 2.4E+02 0.0051 32.9 10.4 128 104-300 30-163 (1202)
189 KOG0288 WD40 repeat protein Ti 38.8 4.4E+02 0.0095 28.0 11.6 116 180-297 335-456 (459)
190 KOG0316 Conserved WD40 repeat- 38.2 4.1E+02 0.0089 26.3 21.5 111 185-303 100-214 (307)
191 KOG1645 RING-finger-containing 37.7 1.1E+02 0.0023 32.3 7.1 85 191-280 200-288 (463)
192 KOG0301 Phospholipase A2-activ 37.6 6.5E+02 0.014 28.5 16.2 108 184-302 99-208 (745)
193 KOG0280 Uncharacterized conser 37.0 4.7E+02 0.01 26.6 13.2 93 207-301 96-195 (339)
194 KOG4499 Ca2+-binding protein R 35.8 2.6E+02 0.0057 27.6 8.9 60 18-88 214-275 (310)
195 PF14779 BBS1: Ciliary BBSome 35.1 2E+02 0.0044 28.5 8.3 37 61-113 172-213 (257)
196 TIGR02658 TTQ_MADH_Hv methylam 34.6 5.4E+02 0.012 26.7 24.5 53 7-64 88-148 (352)
197 KOG4649 PQQ (pyrrolo-quinoline 34.6 4.9E+02 0.011 26.2 16.8 63 238-302 61-123 (354)
198 PF06433 Me-amine-dh_H: Methyl 34.6 2.7E+02 0.0058 28.9 9.4 76 20-113 242-320 (342)
199 KOG0649 WD40 repeat protein [G 34.0 2.4E+02 0.0051 28.0 8.3 63 189-257 211-273 (325)
200 KOG3621 WD40 repeat-containing 33.6 2.7E+02 0.0058 31.4 9.7 98 225-331 30-131 (726)
201 PF08596 Lgl_C: Lethal giant l 33.4 6E+02 0.013 26.8 14.0 72 186-259 86-174 (395)
202 KOG1517 Guanine nucleotide bin 32.8 7.6E+02 0.017 29.7 13.3 54 43-113 1186-1239(1387)
203 KOG0647 mRNA export protein (c 32.8 5.5E+02 0.012 26.2 19.3 122 178-302 148-281 (347)
204 KOG0308 Conserved WD40 repeat- 32.8 5.9E+02 0.013 28.6 12.0 117 184-303 115-244 (735)
205 KOG1408 WD40 repeat protein [F 32.5 8.2E+02 0.018 28.1 17.7 102 240-373 608-712 (1080)
206 PF02333 Phytase: Phytase; In 32.5 6.2E+02 0.013 26.7 14.0 121 200-331 70-214 (381)
207 PF00356 LacI: Bacterial regul 32.4 19 0.0004 25.8 0.5 43 436-478 3-46 (46)
208 KOG0321 WD40 repeat-containing 32.3 6.5E+02 0.014 28.3 12.1 104 197-305 283-394 (720)
209 PF04762 IKI3: IKI3 family; I 32.3 9.1E+02 0.02 28.6 22.4 63 16-87 305-369 (928)
210 COG3386 Gluconolactonase [Carb 31.0 5.8E+02 0.013 25.9 11.9 117 182-302 61-193 (307)
211 PF09202 Rio2_N: Rio2, N-termi 30.4 76 0.0017 25.7 3.8 46 373-442 3-48 (82)
212 KOG0284 Polyadenylation factor 29.9 66 0.0014 33.8 4.1 59 16-85 223-282 (464)
213 KOG1900 Nuclear pore complex, 29.9 4.1E+02 0.0088 32.3 10.8 101 197-303 91-208 (1311)
214 KOG1587 Cytoplasmic dynein int 29.5 2.3E+02 0.0049 31.4 8.4 113 184-303 396-517 (555)
215 TIGR02276 beta_rpt_yvtn 40-res 29.4 1.7E+02 0.0037 19.2 5.8 27 43-71 13-39 (42)
216 PF15232 DUF4585: Domain of un 29.3 1.2E+02 0.0026 24.2 4.5 41 14-58 3-43 (75)
217 COG3386 Gluconolactonase [Carb 29.2 3.3E+02 0.0071 27.7 9.1 64 44-113 235-298 (307)
218 KOG0272 U4/U6 small nuclear ri 29.0 7.3E+02 0.016 26.4 12.7 66 187-254 388-456 (459)
219 KOG1188 WD40 repeat protein [G 28.7 6.8E+02 0.015 26.0 15.2 193 29-307 42-247 (376)
220 KOG3914 WD repeat protein WDR4 28.1 1.8E+02 0.0038 30.5 6.8 64 240-303 74-138 (390)
221 PF08553 VID27: VID27 cytoplas 27.1 1E+03 0.023 27.6 13.4 65 188-256 579-645 (794)
222 PF11239 DUF3040: Protein of u 27.1 44 0.00096 26.8 1.9 25 373-399 2-26 (82)
223 KOG0295 WD40 repeat-containing 26.6 7.6E+02 0.016 25.9 18.8 59 242-303 306-365 (406)
224 PHA02790 Kelch-like protein; P 26.4 8.2E+02 0.018 26.2 16.5 78 206-290 376-453 (480)
225 PF09826 Beta_propel: Beta pro 26.2 8.9E+02 0.019 26.5 13.6 105 24-207 279-389 (521)
226 KOG0301 Phospholipase A2-activ 26.0 1E+03 0.022 27.1 12.5 107 185-303 178-289 (745)
227 KOG4547 WD40 repeat-containing 26.0 9.2E+02 0.02 26.6 19.5 109 183-297 99-214 (541)
228 KOG1445 Tumor-specific antigen 25.7 5.6E+02 0.012 28.9 10.3 164 81-300 26-198 (1012)
229 KOG0973 Histone transcription 25.0 1.2E+03 0.026 27.6 13.9 67 17-90 173-242 (942)
230 PF08309 LVIVD: LVIVD repeat; 24.7 2E+02 0.0042 20.2 4.6 26 232-257 3-28 (42)
231 KOG2055 WD40 repeat protein [G 24.5 9.2E+02 0.02 26.1 19.7 75 17-114 215-289 (514)
232 PRK01742 tolB translocation pr 23.6 7.7E+02 0.017 25.8 11.1 113 186-303 203-323 (429)
233 KOG0264 Nucleosome remodeling 23.4 3.4E+02 0.0074 28.8 8.0 32 183-215 313-348 (422)
234 KOG0321 WD40 repeat-containing 23.3 1.1E+03 0.024 26.6 13.8 124 179-303 211-348 (720)
235 KOG1332 Vesicle coat complex C 22.2 7.9E+02 0.017 24.5 9.7 113 237-376 20-136 (299)
236 KOG4640 Anaphase-promoting com 21.8 1.7E+02 0.0038 32.5 5.7 56 9-71 54-111 (665)
237 PF14779 BBS1: Ciliary BBSome 21.4 3E+02 0.0066 27.3 6.8 46 41-87 202-248 (257)
238 PF08450 SGL: SMP-30/Gluconola 21.4 7E+02 0.015 23.5 25.1 90 189-282 136-233 (246)
239 KOG1538 Uncharacterized conser 21.3 1.2E+03 0.027 26.5 22.3 141 196-374 143-293 (1081)
240 KOG2114 Vacuolar assembly/sort 21.1 1.4E+03 0.029 26.8 14.4 38 178-215 163-202 (933)
241 PF11768 DUF3312: Protein of u 21.0 1.1E+03 0.025 25.9 22.7 96 179-280 252-351 (545)
242 PF14870 PSII_BNR: Photosynthe 20.9 8.8E+02 0.019 24.6 20.4 207 2-300 3-213 (302)
243 KOG1912 WD40 repeat protein [G 20.5 9.7E+02 0.021 27.8 11.0 62 195-259 242-305 (1062)
244 KOG0642 Cell-cycle nuclear pro 20.5 1.2E+03 0.025 25.8 13.4 85 4-113 281-374 (577)
245 KOG1275 PAB-dependent poly(A) 20.5 1.5E+03 0.032 26.9 13.5 119 176-300 206-340 (1118)
246 PHA02790 Kelch-like protein; P 20.4 1.1E+03 0.023 25.3 11.9 81 207-290 332-414 (480)
No 1
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=100.00 E-value=6.8e-68 Score=567.70 Aligned_cols=381 Identities=23% Similarity=0.342 Sum_probs=344.3
Q ss_pred CCCCCCeeeEEEeCCCCcCEEEEecCCCeEEEEEEeeCC-------CcceeEEEEEeCCCCcEEEEEECCCCCceEEEEE
Q 011732 1 MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN-------DTCSSDICCVDPLSGSVLSSFKLELGETGKSMEL 73 (478)
Q Consensus 1 ~~~~~~l~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~-------~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~ 73 (478)
|+++|++|+|++|++++||||+|++.+.+|+|+|.+... +.+.++++++|++||++++.++|+++|.+.|+..
T Consensus 700 id~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s 779 (1096)
T KOG1897|consen 700 IDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIIS 779 (1096)
T ss_pred ecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeee
Confidence 689999999999999999999999999999999965321 3568999999999999999999999999999999
Q ss_pred EEECCe--eEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccc
Q 011732 74 VRVGHE--QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLS 151 (478)
Q Consensus 74 ~~l~~~--~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (478)
++|.++ .|++|||++.. |+|++|..|||++|++.+
T Consensus 780 ~~~~~d~~t~~vVGT~~v~------Pde~ep~~GRIivfe~~e------------------------------------- 816 (1096)
T KOG1897|consen 780 CKFTDDPNTYYVVGTGLVY------PDENEPVNGRIIVFEFEE------------------------------------- 816 (1096)
T ss_pred eeecCCCceEEEEEEEeec------cCCCCcccceEEEEEEec-------------------------------------
Confidence 999865 79999999988 899999999999999983
Q ss_pred cCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccce
Q 011732 152 SSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRF 231 (478)
Q Consensus 152 ~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~ 231 (478)
+ .+|++++++.++|+|++++.|+|+ |+||+|+.|.+|+|..+ ++|+..+....+.
T Consensus 817 --------~--------------~~L~~v~e~~v~Gav~aL~~fngk-llA~In~~vrLye~t~~--~eLr~e~~~~~~~ 871 (1096)
T KOG1897|consen 817 --------L--------------NSLELVAETVVKGAVYALVEFNGK-LLAGINQSVRLYEWTTE--RELRIECNISNPI 871 (1096)
T ss_pred --------C--------------CceeeeeeeeeccceeehhhhCCe-EEEecCcEEEEEEcccc--ceehhhhcccCCe
Confidence 1 489999999999999999999999 99999999999999983 6799999999999
Q ss_pred eEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCCCcccCCCC
Q 011732 232 MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASP 311 (478)
Q Consensus 232 ~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~~~~~s~~~ 311 (478)
++.+|++.+|+|+|||+|+|++++.|+.+++.|+++|||+.|+|+++++++|++.++++|++||+++++++.... ...+
T Consensus 872 ~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~-td~e 950 (1096)
T KOG1897|consen 872 IALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDAT-TDEE 950 (1096)
T ss_pred EEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCC-chhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986443 2334
Q ss_pred CccceeeeeeecCccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEEecCHHHHHHHHHHHHHHhc
Q 011732 312 ECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYELLEAVQARLAI 391 (478)
Q Consensus 312 ~~~L~~~~~fhlGd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~pi~e~~~~~L~~LQ~~L~~ 391 (478)
+++|+..+.||+|+.|++|++|+++++.+++..+ ..++++|||.+|+||+++.++++.+.+|..||++|++
T Consensus 951 R~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~---------~~~~vlfgTv~GsIG~i~sl~~d~~~fL~~Lq~~irk 1021 (1096)
T KOG1897|consen 951 RQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIP---------LEPKVLFGTVNGSIGIIVSLPQDWYDFLEELQRRIRK 1021 (1096)
T ss_pred hhcccceeeEEeccceeeeeecceEeeccccccC---------CCCcEEEEEccceEEEEEecCcchhHHHHHHHHHHHH
Confidence 5689999999999999999999999863333222 3577999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCccccccccCC---CCCCceeeHHHHHHHhcCCHHHHHHHHHhcCCCcceeccCCCCCCCCCCCHHHHHH
Q 011732 392 HPLTAPLLGNDHSEFRSRENP---VGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQVVQ 468 (478)
Q Consensus 392 ~~~~~~~~gl~~~~~R~~~~p---~~~~~~IDGDlle~Fl~L~~~~q~~Ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
+++++||++|..||+|+.. ++++|||||||+|+|++|++++|.+|+++.... ..+ ++|++|++
T Consensus 1022 --~i~s~gglsH~~yrsf~~e~~~~P~~gfIDGDLiEsfl~l~~~~~~~i~~~~~~~---------~~~---~s~~el~k 1087 (1096)
T KOG1897|consen 1022 --VIKSVGGLSHMDYRSFEFEKRTSPVKGFIDGDLIESFLDLSRSKMREIVRGLEHT---------ESL---ASVQELLK 1087 (1096)
T ss_pred --hhcccCCcchhhHhhhhcccccCCCcCcccchHHHhhhccCHHHHHHHHhhcccc---------ccc---CCHHHHHH
Confidence 8899999999999999652 249999999999999999999999999996432 111 89999999
Q ss_pred HHHHH
Q 011732 469 LLERV 473 (478)
Q Consensus 469 ~~~r~ 473 (478)
+||-+
T Consensus 1088 ~vEel 1092 (1096)
T KOG1897|consen 1088 IVEEL 1092 (1096)
T ss_pred HHHHH
Confidence 98743
No 2
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.7e-64 Score=549.02 Aligned_cols=373 Identities=21% Similarity=0.272 Sum_probs=331.8
Q ss_pred CCCCCCeeeEEEeCCCCcCEEEEecCCCeEEEEEEeeCC----------------------CcceeEEEEEeCCCCcEEE
Q 011732 1 MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN----------------------DTCSSDICCVDPLSGSVLS 58 (478)
Q Consensus 1 ~~~~~~l~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~----------------------~~~~s~l~l~d~~t~~~i~ 58 (478)
|.+-++|++|+|||+.|||+++||++.++|+|+++.+.. ...++.|+|++|.||++++
T Consensus 939 ~~Ydn~wPvkkIpl~~T~~~vvYh~e~~vy~v~t~~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~sw~vi~ 1018 (1366)
T KOG1896|consen 939 LSYDNKWPVKKIPLRKTPHQVVYHYEKKVYAVITSTPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPESWEVID 1018 (1366)
T ss_pred cccCCCCcccccccccchhheeeeccceEEEEEEeccceeeecccccccccccccccccccccccceeEEecCCcccccc
Confidence 356789999999999999999999999999999854311 2358999999999999999
Q ss_pred EEECCCCCceEEEEEEEEC-------CeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCC
Q 011732 59 SFKLELGETGKSMELVRVG-------HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGS 131 (478)
Q Consensus 59 ~~~l~~~E~~~s~~~~~l~-------~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~ 131 (478)
.|+|+++|++++|+++.+. .++||+|||++..| ||.|++||+++|++.
T Consensus 1019 ~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~g-------EDv~~RGr~hi~diI------------------ 1073 (1366)
T KOG1896|consen 1019 KIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQG-------EDVPARGRIHIFDII------------------ 1073 (1366)
T ss_pred ccccCccceeeEEEEEEEEecccccCCcceEEEEEeeccc-------ccccCcccEEEEEEE------------------
Confidence 9999999999999999996 26999999999984 999999999999999
Q ss_pred CCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEE
Q 011732 132 SSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVC 211 (478)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~ 211 (478)
+|||| |++ ++|+ +||+.+++++++|+|.++|.++|+ |+.+.|+||++|
T Consensus 1074 ------------eVVPe----------pgk--------P~t~-~KlKel~~eE~KGtVsavceV~G~-l~~~~GqKI~v~ 1121 (1366)
T KOG1896|consen 1074 ------------EVVPE----------PGK--------PFTK-NKLKELYIEEQKGTVSAVCEVRGH-LLSSQGQKIIVR 1121 (1366)
T ss_pred ------------EecCC----------CCC--------Cccc-ceeeeeehhhcccceEEEEEeccE-EEEccCcEEEEE
Confidence 79999 554 2344 899999999999999999999999 999999999999
Q ss_pred eeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCC---eEE
Q 011732 212 GFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD---TAV 288 (478)
Q Consensus 212 ~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~---~~l 288 (478)
+|++++. |.+++|+++++|++++++.||+|++||+|+|++|++|++++.+|++++||..++.|++.+||-++ +++
T Consensus 1122 ~l~r~~~--ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~fl 1199 (1366)
T KOG1896|consen 1122 KLDRDSE--LIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFL 1199 (1366)
T ss_pred EeccCCc--ceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEE
Confidence 9987644 99999999999999999999999999999999999999999999999999999999999998544 899
Q ss_pred EeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEEeeeeeccCCCCCccccccccCCCCCcEEE--EEeCCC
Q 011732 289 VSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTII--ASTLLG 366 (478)
Q Consensus 289 ~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il--~~T~~G 366 (478)
++|+++||++|.|.|++.++.+++ ||.++++||+|..+++|.+..-. .+.+.. .+.+.++ |+|++|
T Consensus 1200 vsDa~rNi~vy~Y~Pe~~eS~~G~-RLv~radfhvg~~vs~m~~lp~~---~~~e~~--------~~~~~~~~v~gtlDG 1267 (1366)
T KOG1896|consen 1200 VSDADRNIHVYMYAPENIESLSGQ-RLVRRADFHVGAHVSTMFRLPCH---QNAEFG--------SNSPMFYEVFGTLDG 1267 (1366)
T ss_pred EEcCCCcEEEEEeCCCCccccCcc-eeeeeeeeEeccceeeeEecccc---ccchhc--------cCCchhhhhhcccCC
Confidence 999999999999999998999997 89999999999999999875411 111100 1234444 999999
Q ss_pred ceEEEEecCHHHHHHHHHHHHHHhcCCCCCCcCCCCccccccccCC----CCCCceeeHHHHHHHhcCCHHHHHHHHHhc
Q 011732 367 SIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP----VGVPKILDGDMLSQFLELTSTQQEAVLSFT 442 (478)
Q Consensus 367 sIg~i~pi~e~~~~~L~~LQ~~L~~~~~~~~~~gl~~~~~R~~~~p----~~~~~~IDGDlle~Fl~L~~~~q~~Ia~~~ 442 (478)
++|.++||+|+.|++|..||++|.. .++++|||||++||....+ .+.+.+|||+||.+|..|+-++|.++|+++
T Consensus 1268 ~l~~~~Pl~e~~YRRL~~lQn~L~~--~~~hv~GLNPr~yR~~~s~~~~~n~~r~ilDg~ll~~f~yl~~~er~elA~ki 1345 (1366)
T KOG1896|consen 1268 GLGHLVPLDEKTYRRLLMLQNALMD--RLPHVGGLNPRAYRLLDSSLQLSNSLRSILDGELLNRFSYLSMSEREELAHKI 1345 (1366)
T ss_pred ceeEEecCCHHHHHHHHHHHHHHHH--hhhhhcCCCHHHhhhccchhhhcCCCcccchHhHHHHhhccchhhHHHHHHhc
Confidence 9999999999999999999999999 5599999999999987432 237999999999999999999999999998
Q ss_pred CCCc
Q 011732 443 LGSF 446 (478)
Q Consensus 443 ~~~~ 446 (478)
|.+.
T Consensus 1346 Gt~~ 1349 (1366)
T KOG1896|consen 1346 GTTR 1349 (1366)
T ss_pred CCCH
Confidence 7543
No 3
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=100.00 E-value=4.3e-57 Score=458.59 Aligned_cols=311 Identities=33% Similarity=0.513 Sum_probs=251.9
Q ss_pred eeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECC-----eeEEEEeeecCCCCCCCCCCCCcCcc-eEEEEEEEEecc
Q 011732 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-----EQVLVVGTSLSSGPAIMPSGEAESTK-GRLIVLCIEHMQ 116 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~-----~~~l~VGT~~~~g~~~~~~~e~~~~~-Gri~v~~i~~~~ 116 (478)
+|+|+|+|+.+|+++++|+|+++|+++|++.|.|.+ ++||||||++..+ |+..++ |||++|++.+.
T Consensus 1 ~s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~-------~~~~~~~Gri~v~~i~~~- 72 (321)
T PF03178_consen 1 ASSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYG-------EDPEPSSGRILVFEISES- 72 (321)
T ss_dssp --EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--T-------TSSS-S-EEEEEEEECSS-
T ss_pred CcEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEeccccc-------ccccccCcEEEEEEEEcc-
Confidence 479999999999999999999999999999999985 6999999999873 555444 99999999841
Q ss_pred cCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeC
Q 011732 117 NSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL 196 (478)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~ 196 (478)
|. ..++|+++++++++|||++|+.++
T Consensus 73 ------------------------------------------~~------------~~~~l~~i~~~~~~g~V~ai~~~~ 98 (321)
T PF03178_consen 73 ------------------------------------------PE------------NNFKLKLIHSTEVKGPVTAICSFN 98 (321)
T ss_dssp -----------------------------------------------------------EEEEEEEEEESS-EEEEEEET
T ss_pred ------------------------------------------cc------------cceEEEEEEEEeecCcceEhhhhC
Confidence 00 126999999999999999999998
Q ss_pred CceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCcee
Q 011732 197 DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLV 276 (478)
Q Consensus 197 g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~v 276 (478)
|+ |++|+|++|++|+|+.++ .|.+.++++.++++++|.+.+|+|+|||+++|+++++|+++..+|.++|||+.++|+
T Consensus 99 ~~-lv~~~g~~l~v~~l~~~~--~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v 175 (321)
T PF03178_consen 99 GR-LVVAVGNKLYVYDLDNSK--TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWV 175 (321)
T ss_dssp TE-EEEEETTEEEEEEEETTS--SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEE
T ss_pred CE-EEEeecCEEEEEEccCcc--cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccE
Confidence 88 999999999999999843 488889999999999999999999999999999999999988899999999999999
Q ss_pred EEEEee-cCCeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEEeeeeeccCCCCCccccccccCCCC
Q 011732 277 ADCVLM-DVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESS 355 (478)
Q Consensus 277 ta~~~l-d~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~ 355 (478)
+++.++ |++.++++|++||+++|++++...++.+...+|+..++||+|+.||+++++++.+. ...... ..
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~-~~~~~~--------~~ 246 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPR-SGSSES--------PN 246 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS---SSSS-T--------TE
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeec-CCCCcc--------cc
Confidence 999999 77899999999999999998755433333228999999999999999999998642 111100 13
Q ss_pred CcEEEEEeCCCceEEEEe-cCHHHHHHHHHHHHHHhcCCCCCCcCCCCccccccccCC--CCCCceeeHHHHHHHhc
Q 011732 356 QTTIIASTLLGSIVIFIP-ISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP--VGVPKILDGDMLSQFLE 429 (478)
Q Consensus 356 ~~~il~~T~~GsIg~i~p-i~e~~~~~L~~LQ~~L~~~~~~~~~~gl~~~~~R~~~~p--~~~~~~IDGDlle~Fl~ 429 (478)
.+.++|+|++|+||.+.| +++++|++|..||++|.+ .++++||++|++||++++| ..+++|||||||++||+
T Consensus 247 ~~~i~~~T~~G~Ig~l~p~l~~~~~~~L~~lQ~~l~~--~~~~~~gl~~~~~R~~~~~~~~~~~~~iDgdll~~fl~ 321 (321)
T PF03178_consen 247 RPQILYGTVDGSIGVLIPFLSEEEYRFLQALQNNLRK--HIPSLGGLNPRSFRSYKNPRMKRSKGFIDGDLLEQFLE 321 (321)
T ss_dssp EEEEEEEETTS-EEEEEE-E-HHHHHHHHHHHHHHHH--HS--TTS--HHHHTSEEESEEE--BSEEEHHHHHGGGG
T ss_pred cceEEEEecCCEEEEEEecCCHHHHHHHHHHHHHHHh--hCCCCccCChHHhccccCccccCCCccCcHHHHHHhhC
Confidence 578999999999999999 799999999999999999 6799999999999999876 12799999999999986
No 4
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=100.00 E-value=1.1e-55 Score=475.58 Aligned_cols=370 Identities=30% Similarity=0.435 Sum_probs=331.3
Q ss_pred CCeeeEEEeCCCCcCEEEEecCCCeEEEEEEeeCC---------------------------------------------
Q 011732 5 KRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN--------------------------------------------- 39 (478)
Q Consensus 5 ~~l~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~--------------------------------------------- 39 (478)
..++.+.+|+++||||+++||++++++++++++++
T Consensus 763 ~~~n~~~~~l~~tprkvv~h~es~lLii~~td~~~~~~~~a~~~~~~~g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~ 842 (1205)
T KOG1898|consen 763 KVLNVDGFPLAYTPRKVVIHPESGLLIIGRTDHNATLTKDARKNQMEAGGVLESGEEKEDEMGGEMEIIGREEVLPENVY 842 (1205)
T ss_pred ccccccccccccCcceEEEecCCCeEEEEEecccchhhHHHhhhhhhcccccccccccchhhccchhhhccccccccccc
Confidence 45789999999999999999999999999987522
Q ss_pred ------CcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECC---eeEEEEeeecCCCCCCCCCCCCcCcceEEEEE
Q 011732 40 ------DTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH---EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVL 110 (478)
Q Consensus 40 ------~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~---~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~ 110 (478)
..|.++++++|+.++..+..+++..||...|++.+.|.. .++++||++.+.. ..+. .-+.|++|.|
T Consensus 843 ~~p~a~~~w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~--l~~~---~~~~g~~yty 917 (1205)
T KOG1898|consen 843 GSPRAGNGWVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQ--LDSK---SISSGFVYTY 917 (1205)
T ss_pred cCcccccCccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeecccc--cccc---ccCCCceEEE
Confidence 127889999999999999999999999999999999974 3699999998762 2111 2278999999
Q ss_pred EEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceE
Q 011732 111 CIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVL 190 (478)
Q Consensus 111 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ 190 (478)
++.+. +.+|+++|+++++|+|.
T Consensus 918 k~~~~----------------------------------------------------------g~~lellh~T~~~~~v~ 939 (1205)
T KOG1898|consen 918 KFVRN----------------------------------------------------------GDKLELLHKTEIPGPVG 939 (1205)
T ss_pred EEEec----------------------------------------------------------CceeeeeeccCCCccce
Confidence 99841 14899999999999999
Q ss_pred EEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecC
Q 011732 191 AICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCD 270 (478)
Q Consensus 191 ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD 270 (478)
|||+|+|+ +++|+|+.+++|++++ ++.|+++.+--++.+|++|.+.+.+|+|||..+||.+++|++++++|..+|.|
T Consensus 940 Ai~~f~~~-~LagvG~~l~~YdlG~--K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGR-VLAGVGRFLRLYDLGK--KKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCE-EEEecccEEEEeeCCh--HHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 99999997 9999999999999998 57788866656799999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeecCCeEEEeCCCCcEEEEecCCCcccC--CCCC---------------ccceeeeeeecCccccEEEee
Q 011732 271 PSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDN--ASPE---------------CNLTPNCAYHMGEIAVSIRKG 333 (478)
Q Consensus 271 ~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~~~~~s--~~~~---------------~~L~~~~~fhlGd~vt~~~~g 333 (478)
+.|||||++.++|+++++++|++||+++++.|++..+. ++|. +|.+...+||+||.++++...
T Consensus 1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~k~~~~~g~lN~~~~K~~~i~~f~v~Dvits~q~~ 1096 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVVRIPPDVSEEASEDPTELKIAWEQGFLNDAPQKVQLISQFFVGDVITSLQKV 1096 (1205)
T ss_pred CccceeeEEEEecCCceeeccccCcEEEEECCCcchhhhccCCccccceecccccccccHhhhhhhhccccCeeeeceee
Confidence 99999999999999999999999999999999876542 2221 478899999999999999987
Q ss_pred eeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEEec-CHHHHHHHHHHHHHHhcCCCCCCcCCCCccccccccCC
Q 011732 334 SFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPI-SSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP 412 (478)
Q Consensus 334 sl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~pi-~e~~~~~L~~LQ~~L~~~~~~~~~~gl~~~~~R~~~~p 412 (478)
++. +++++.++|+|+.|+||+|+|+ +++++++++.+|.+|+. ..++++|.||.+||+||+|
T Consensus 1097 ~~i----------------~~a~e~~iy~tl~GtiG~f~p~~s~~d~~Ff~~~e~~~r~--e~ppl~GrDH~~yRsyy~P 1158 (1205)
T KOG1898|consen 1097 SSI----------------PGARESLIYTTLLGTIGVFAPFLSREDVDFFQHLEMHMRK--EYPPLLGRDHLEYRSYYAP 1158 (1205)
T ss_pred eec----------------cCCcceeeeeeccccceEEeecccccchHHHHHHHHhccc--cCCcccCcchhhhhhhccc
Confidence 764 2557889999999999999999 88899999999999998 8899999999999999999
Q ss_pred CCCCceeeHHHHHHHhcCCHHHHHHHHHhcCCCcceeccCCCCCCCCCCCHHHHHHHHHHHhhhc
Q 011732 413 VGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQVVQLLERVHYAL 477 (478)
Q Consensus 413 ~~~~~~IDGDlle~Fl~L~~~~q~~Ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 477 (478)
+|.+|||||||+|+.|+..+|++|++++. .++++|++.||++|+++
T Consensus 1159 --vk~VIDGDlceqF~~L~~~~Qe~va~el~-----------------~ti~eI~kkledir~~~ 1204 (1205)
T KOG1898|consen 1159 --VKKVIDGDLCEQFLRLEENQQEEVAEELD-----------------RTIEEISKKLEDIRTRY 1204 (1205)
T ss_pred --hhhcccHHHHHHHhhCCHHHHHHHHhccc-----------------CCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999953 68999999999999875
No 5
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=100.00 E-value=4.7e-52 Score=438.16 Aligned_cols=388 Identities=16% Similarity=0.234 Sum_probs=339.3
Q ss_pred CCCCeeeEEEeCCCCcCEEEEecCCCeEEEEEEeeCC---------------------CcceeEEEEEeCCCCcEEEEEE
Q 011732 3 HNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN---------------------DTCSSDICCVDPLSGSVLSSFK 61 (478)
Q Consensus 3 ~~~~l~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~---------------------~~~~s~l~l~d~~t~~~i~~~~ 61 (478)
..+||+++++|++.|-.+|+|||..++|+|+.....+ ...++.+-|++|+||++|++|+
T Consensus 896 ~gnK~p~k~~~~~Ktlqklvyh~~~~~~~Vgsc~~~~f~~~gEdgE~~i~~D~Nvphaeg~~~~vdL~spksw~vID~ye 975 (1319)
T COG5161 896 VGNKNPVKRTPKHKTLQKLVYHCAGRYMVVGSCEEAGFSPKGEDGESGIPVDTNVPHAEGYRFYVDLYSPKSWEVIDTYE 975 (1319)
T ss_pred ecccCceeeccccccccceeeeccceEEEEEeeeecCccccCCCCCccCccCCCCcccccceeeEEEecCcceeEeeeee
Confidence 3589999999999999999999999999998765311 2368999999999999999999
Q ss_pred CCCCCceEEEEEEEEC-------CeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCc
Q 011732 62 LELGETGKSMELVRVG-------HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQ 134 (478)
Q Consensus 62 l~~~E~~~s~~~~~l~-------~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~ 134 (478)
|++||.+..++...++ +++||+|||++.. +||.|.+||+++|++.
T Consensus 976 f~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgtt~~~-------gED~p~rG~~hv~eII--------------------- 1027 (1319)
T COG5161 976 FDENEYVFHIKYLILDDMQGTKGKSPYILVGTTFIE-------GEDRPARGRLHVLEII--------------------- 1027 (1319)
T ss_pred cccceeeeeeeeeeeeccccccCCCceEEEEeeecc-------cCccCCcCceEEEEEE---------------------
Confidence 9999999999999996 3599999999988 4999999999999999
Q ss_pred cCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeC
Q 011732 135 RTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFP 214 (478)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~ 214 (478)
+|||+ |++ ++|+ +||+++...+++|.|..+|+++|+ ++.+.|+||.|++++
T Consensus 1028 ---------~VVP~----------pg~--------P~t~-~KLK~~~~Ee~kGTV~~vcEV~G~-~~~~qgqKV~Vr~i~ 1078 (1319)
T COG5161 1028 ---------SVVPS----------PGS--------PFTD-CKLKVLGIEETKGTVVRVCEVRGK-IALCQGQKVMVRKID 1078 (1319)
T ss_pred ---------EecCC----------CCC--------Cccc-ceeeEEehhhcccEEEEEEEEccE-EEeccCcEEEEEEec
Confidence 78999 543 2344 899999999999999999999999 999999999999999
Q ss_pred CCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCC---eEEEeC
Q 011732 215 NDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD---TAVVSD 291 (478)
Q Consensus 215 ~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~---~~l~aD 291 (478)
++++ +.+++|++.+++++++++.+|++++||+|++++|+.|+.++.+|+++++....+.+++.+||-.+ +++++|
T Consensus 1079 ~~~~--iipV~F~Dl~~ft~s~k~~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G~~lyf~~~D 1156 (1319)
T COG5161 1079 RSSG--IIPVGFYDLHIFTSSIKVVKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTGNELYFLCCD 1156 (1319)
T ss_pred ccCC--cceeEEEeeeeeeehhhhhhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccCCeeEEEEEc
Confidence 9765 99999999999999999999999999999999999999999999999999999999999998543 899999
Q ss_pred CCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEE
Q 011732 292 RKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIF 371 (478)
Q Consensus 292 ~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i 371 (478)
++||+++|.|.|+++++.+++ +|+.++.||+|...++|.... .+...+. -.....+++|+-++|++..+
T Consensus 1157 a~gnih~l~Y~P~np~S~sG~-RLV~rssFtlhs~~~~m~llP------rn~efG~----~~~~~f~~v~~~sdG~l~~v 1225 (1319)
T COG5161 1157 AKGNIHGLTYSPNNPISMSGA-RLVKRSSFTLHSAEIKMNLLP------RNSEFGA----GFKKNFIMVYSRSDGMLIHV 1225 (1319)
T ss_pred CCCCEEEEecCCCCccccCcc-eeEeeccccccchhhhhhhcc------chhhhCC----CCCCceeEEEEccCCcEEEE
Confidence 999999999999888888887 899999999999999996532 1112111 01356789999999999999
Q ss_pred EecCHHHHHHHHHHHHHHhcCCCCCCcCCCCccccccccCC----CCCCceeeHHHHHHHhcCCHHHHHHHHHhcCCCcc
Q 011732 372 IPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP----VGVPKILDGDMLSQFLELTSTQQEAVLSFTLGSFD 447 (478)
Q Consensus 372 ~pi~e~~~~~L~~LQ~~L~~~~~~~~~~gl~~~~~R~~~~p----~~~~~~IDGDlle~Fl~L~~~~q~~Ia~~~~~~~~ 447 (478)
+||+++.|++|.-+|+++.++ .+++|||||+.||-...+ ...+..||+.+|..|-.|+-+.|++||+++|.-
T Consensus 1226 vpisd~~YrrL~~IQ~~i~~r--~~~vgGLNpr~yRL~~d~~~~~~s~r~~ld~~ii~~F~y~~~~~r~sva~kaGr~-- 1301 (1319)
T COG5161 1226 VPISDAHYRRLLGIQTAIMAR--LKSVGGLNPRDYRLNSDIHLHSLSLRSPLDLHIINLFSYFDMSTRESVASKAGRI-- 1301 (1319)
T ss_pred eccCHHHHHHHHHHHHHHHHH--HHhhcCCChhhhhhccCHHHhcCCcccchhhhhhhhhhhcchhhhhHHHhhcCCc--
Confidence 999999999999999999994 489999999999985332 237889999999999999999999999998632
Q ss_pred eeccCCCCCCCCCCCHHHHHHHHHHHhh
Q 011732 448 TIKASSKLPPSSPIPVNQVVQLLERVHY 475 (478)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 475 (478)
-.-+++ |++.+++-++|
T Consensus 1302 ---------~~~e~~--D~i~~~~~lrs 1318 (1319)
T COG5161 1302 ---------DRKEIS--DMIASLNLLRS 1318 (1319)
T ss_pred ---------hHHHHH--HHHHHHHHHhc
Confidence 111333 77777666654
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.13 E-value=0.0004 Score=72.82 Aligned_cols=196 Identities=19% Similarity=0.240 Sum_probs=131.5
Q ss_pred EeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCC
Q 011732 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG 91 (478)
Q Consensus 12 i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g 91 (478)
++|+.+|+-++-.++..+.+|.|. +.|.|+...+. +.+.. ..=.+.|+++. .++.+++|| |
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~--------~~iv~l~~~~~--~~~~~--~~y~~s~vAv~--~~~~~vaVG-----G 462 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACI--------SDIVLLQDQTK--VSSIP--IGYESSAVAVS--PDGSEVAVG-----G 462 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEec--------CcEEEEecCCc--ceeec--cccccceEEEc--CCCCEEEEe-----c
Confidence 588999999999998889888875 34666664432 22222 22233343332 466899999 2
Q ss_pred CCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccc
Q 011732 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (478)
.-|.+++|.+.. +
T Consensus 463 -----------~Dgkvhvysl~g----------------------------------------------~---------- 475 (603)
T KOG0318|consen 463 -----------QDGKVHVYSLSG----------------------------------------------D---------- 475 (603)
T ss_pred -----------ccceEEEEEecC----------------------------------------------C----------
Confidence 246799999982 0
Q ss_pred cccceEEEEEEEecCCceEEEeeeC-CceEEEE-eCCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEee
Q 011732 172 TETWQLRLAYSTTWPGMVLAICPYL-DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGD 247 (478)
Q Consensus 172 ~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~a-vg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD 247 (478)
...+.....+.+|+|++|.--. +.||+++ +..++.+|+...... .+...+|+. ..|.+|.- ...+++-|-
T Consensus 476 ---~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHt--akI~~~aWsP~n~~vATGS 549 (603)
T KOG0318|consen 476 ---ELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-KTNRWAFHT--AKINCVAWSPNNKLVATGS 549 (603)
T ss_pred ---cccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-ecceeeeee--eeEEEEEeCCCceEEEecc
Confidence 0122334468899999998665 5767776 477899999986221 133333332 23444443 344555666
Q ss_pred cCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEec
Q 011732 248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~ 301 (478)
+-.+|.++..+.-... .++++.++..|+.+.++|+.+++.+-.+.||.+..+
T Consensus 550 lDt~Viiysv~kP~~~--i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 550 LDTNVIIYSVKKPAKH--IIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred ccceEEEEEccChhhh--eEeccccccCceeEEEecCceEEeccCcceeEEecc
Confidence 7778888876543333 778999999999999999999999999999987764
No 7
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.82 E-value=0.013 Score=59.46 Aligned_cols=209 Identities=15% Similarity=0.133 Sum_probs=133.9
Q ss_pred eeEEEeCCC--CcCEEEEec-------CCCeEEEEEEeeCC--Ccce-eEEEEEeCCC-------CcEEEEEECCCCCce
Q 011732 8 NVRKFHLGG--TPKKVLYHS-------ESRLLIVMRTELNN--DTCS-SDICCVDPLS-------GSVLSSFKLELGETG 68 (478)
Q Consensus 8 ~ir~i~L~~--tp~ki~y~~-------~~~~~~v~~~~~~~--~~~~-s~l~l~d~~t-------~~~i~~~~l~~~E~~ 68 (478)
.+.+++|.. .+..++... ....++|++..... .... +.|.+++-.. ++.++..++ ...+
T Consensus 14 ~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V 91 (321)
T PF03178_consen 14 VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPV 91 (321)
T ss_dssp EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-E
T ss_pred EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcc
Confidence 445555554 455444433 23455555543322 1233 8899998766 245555555 4557
Q ss_pred EEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeecccccc
Q 011732 69 KSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATE 148 (478)
Q Consensus 69 ~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (478)
.|++.+ ++ +|++|.+ ++|++|++..
T Consensus 92 ~ai~~~--~~--~lv~~~g-----------------~~l~v~~l~~---------------------------------- 116 (321)
T PF03178_consen 92 TAICSF--NG--RLVVAVG-----------------NKLYVYDLDN---------------------------------- 116 (321)
T ss_dssp EEEEEE--TT--EEEEEET-----------------TEEEEEEEET----------------------------------
T ss_pred eEhhhh--CC--EEEEeec-----------------CEEEEEEccC----------------------------------
Confidence 777665 43 3777754 4789999983
Q ss_pred ccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeec
Q 011732 149 QLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVG 227 (478)
Q Consensus 149 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~ 227 (478)
+ .+|......+.+-.|.+|..+++. |++|- =..+.++.|+.++ +.|..++--
T Consensus 117 -----------~--------------~~l~~~~~~~~~~~i~sl~~~~~~-I~vgD~~~sv~~~~~~~~~-~~l~~va~d 169 (321)
T PF03178_consen 117 -----------S--------------KTLLKKAFYDSPFYITSLSVFKNY-ILVGDAMKSVSLLRYDEEN-NKLILVARD 169 (321)
T ss_dssp -----------T--------------SSEEEEEEE-BSSSEEEEEEETTE-EEEEESSSSEEEEEEETTT-E-EEEEEEE
T ss_pred -----------c--------------ccchhhheecceEEEEEEeccccE-EEEEEcccCEEEEEEEccC-CEEEEEEec
Confidence 1 147778888888899999999886 88885 4569999998743 347777754
Q ss_pred ccceeEEEEEEe--CCEEEEeecCCcEEEEEEecc------Cc-eEEEEecCCCCceeEEE---Eeec----CC-----e
Q 011732 228 RTRFMIMLLTAH--FTRIAVGDCRDGILFYSYHED------AR-KLEQIYCDPSQRLVADC---VLMD----VD-----T 286 (478)
Q Consensus 228 ~~~~~i~sL~~~--~n~IlvgD~~~Sv~ll~y~~~------~~-~L~~varD~~~~~vta~---~~ld----~~-----~ 286 (478)
..+..++++... ++.++++|....+.+++|++. .. +|..++.=.....++++ .+.. .+ .
T Consensus 170 ~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~ 249 (321)
T PF03178_consen 170 YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQ 249 (321)
T ss_dssp SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEE
T ss_pred CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccce
Confidence 457778888776 459999999999999999863 23 78888776666667777 2222 11 3
Q ss_pred EEEeCCCCcEEEEe
Q 011732 287 AVVSDRKGSIAVLS 300 (478)
Q Consensus 287 ~l~aD~~gNl~vl~ 300 (478)
++.+-.+|.|.++.
T Consensus 250 i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 250 ILYGTVDGSIGVLI 263 (321)
T ss_dssp EEEEETTS-EEEEE
T ss_pred EEEEecCCEEEEEE
Confidence 88888999999665
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.79 E-value=0.034 Score=52.31 Aligned_cols=191 Identities=10% Similarity=0.043 Sum_probs=111.2
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCC
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPS 97 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~ 97 (478)
...+.++|..+.+++++. ...++++|..+.+.+..+... ...+.|+... .+..++++|.
T Consensus 54 i~~~~~~~~~~~l~~~~~-------~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~~~~~~~~----------- 112 (289)
T cd00200 54 VRDVAASADGTYLASGSS-------DKTIRLWDLETGECVRTLTGH-TSYVSSVAFS--PDGRILSSSS----------- 112 (289)
T ss_pred eeEEEECCCCCEEEEEcC-------CCeEEEEEcCcccceEEEecc-CCcEEEEEEc--CCCCEEEEec-----------
Confidence 347778887766665543 357899998877666555422 2245554432 2235555553
Q ss_pred CCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceE
Q 011732 98 GEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQL 177 (478)
Q Consensus 98 ~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 177 (478)
..|.+.+|++.+. ...
T Consensus 113 -----~~~~i~~~~~~~~-----------------------------------------------------------~~~ 128 (289)
T cd00200 113 -----RDKTIKVWDVETG-----------------------------------------------------------KCL 128 (289)
T ss_pred -----CCCeEEEEECCCc-----------------------------------------------------------EEE
Confidence 1578999988620 011
Q ss_pred EEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeC--CEEEEeecCCcEE
Q 011732 178 RLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF--TRIAVGDCRDGIL 253 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~--n~IlvgD~~~Sv~ 253 (478)
..+. ...++|++++-.. +.+|+++. +..|++|++... +.+.... .....+.++.... +.++++..-..+.
T Consensus 129 ~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 129 TTLR--GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG--KCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred EEec--cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc--ccceeEe--cCccccceEEECCCcCEEEEecCCCcEE
Confidence 1111 3567788888776 56455555 777999998752 2222222 2222566666554 4888888777777
Q ss_pred EEEEeccCceEEEEecCCCCceeEEEEeecCC-eEEEeCCCCcEEEEecC
Q 011732 254 FYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 254 ll~y~~~~~~L~~varD~~~~~vta~~~ld~~-~~l~aD~~gNl~vl~~~ 302 (478)
++..+ ..+....-+ .....+.++.+..++ .+++++.+|.+.++...
T Consensus 203 i~d~~--~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 203 LWDLS--TGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred EEECC--CCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 76543 222222211 223367777765544 56666669999999875
No 9
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.34 E-value=0.068 Score=61.18 Aligned_cols=200 Identities=12% Similarity=0.101 Sum_probs=114.2
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
....++++|....+++.++ .-..|+++|..+++.+..+... ..+.|+... -.+..+|++|..
T Consensus 577 ~V~~l~~~p~~~~~L~Sgs------~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~-~~~g~~latgs~--------- 638 (793)
T PLN00181 577 RVWSIDYSSADPTLLASGS------DDGSVKLWSINQGVSIGTIKTK--ANICCVQFP-SESGRSLAFGSA--------- 638 (793)
T ss_pred CEEEEEEcCCCCCEEEEEc------CCCEEEEEECCCCcEEEEEecC--CCeEEEEEe-CCCCCEEEEEeC---------
Confidence 3456667764333333322 1357999999988888776542 345444321 123467887754
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
.|.|++|++.+. . ..
T Consensus 639 -------dg~I~iwD~~~~--------------------------------------------~--------------~~ 653 (793)
T PLN00181 639 -------DHKVYYYDLRNP--------------------------------------------K--------------LP 653 (793)
T ss_pred -------CCeEEEEECCCC--------------------------------------------C--------------cc
Confidence 578999998620 0 01
Q ss_pred EEEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCC----cccceeeeecccceeEEEEEEeCCEEEEeecCCc
Q 011732 177 LRLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDN----PQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDG 251 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~----~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~S 251 (478)
+. ......++|.++.-..+.+|+.+. ...|.+|++.... .+.+....-.......+++...+++|++|..-..
T Consensus 654 ~~--~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 654 LC--TMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred ce--EecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence 11 112456788888877777565554 5679999986421 1112222111222234455556889999988888
Q ss_pred EEEEEEeccCceEEE----------EecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEec
Q 011732 252 ILFYSYHEDARKLEQ----------IYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 252 v~ll~y~~~~~~L~~----------varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~ 301 (478)
+.++........+.. +.-+....++.++.+- +...++++..+|+|.+++.
T Consensus 732 v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 732 VFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 888653321111110 0112233456666663 3448899999999999874
No 10
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.30 E-value=0.15 Score=51.60 Aligned_cols=237 Identities=12% Similarity=0.058 Sum_probs=130.7
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCC----cEEEEEECCCCCceEEEEEEEECCeeEEE
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSG----SVLSSFKLELGETGKSMELVRVGHEQVLV 83 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~----~~i~~~~l~~~E~~~s~~~~~l~~~~~l~ 83 (478)
.+.+++++..|..|+++|+.+.++++... .+.|.++|..+. +.+.. ++..+.+.++.+ -.+..+++
T Consensus 72 ~~~~~~~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~--~p~g~~l~ 141 (330)
T PRK11028 72 FAAESPLPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQI--IEGLEGCHSANI--DPDNRTLW 141 (330)
T ss_pred EeeeecCCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceee--ccCCCcccEeEe--CCCCCEEE
Confidence 35667888899999999999988877531 356777766532 22222 222344444322 12335565
Q ss_pred EeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCC
Q 011732 84 VGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDAS 163 (478)
Q Consensus 84 VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
|... ..|+|.+|++.+.. .+. +
T Consensus 142 v~~~---------------~~~~v~v~d~~~~g---------------------------~l~------------~---- 163 (330)
T PRK11028 142 VPCL---------------KEDRIRLFTLSDDG---------------------------HLV------------A---- 163 (330)
T ss_pred EeeC---------------CCCEEEEEEECCCC---------------------------ccc------------c----
Confidence 5432 25789999997310 000 0
Q ss_pred cCCccccccccceEEEEEEEecCCceEEEeee-CCceEEEEe--CCeEEEEeeCCCCcccceeeeecc-------cceeE
Q 011732 164 CDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGR-------TRFMI 233 (478)
Q Consensus 164 ~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~-~g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~-------~~~~i 233 (478)
........+....+..+.-- +|++|.++. +++|.+|++..... .++.+.... .+.+.
T Consensus 164 ------------~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 164 ------------QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-EIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred ------------cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-CEEEEEEEecCCCcCCCCccc
Confidence 00000001111122333322 356565554 67899999975211 233222111 11122
Q ss_pred --EEEEEeCCEEEEeec-CCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCC-CCcEEEEecCCCcccC
Q 011732 234 --MLLTAHFTRIAVGDC-RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDR-KGSIAVLSCSDRLEDN 308 (478)
Q Consensus 234 --~sL~~~~n~IlvgD~-~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~-~gNl~vl~~~~~~~~s 308 (478)
..++..+.++++++. .+++.++.++.....+..++.-+...+..++.+- |...++++.. ++.+.+|+.+..
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~---- 306 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE---- 306 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC----
Confidence 223445779999976 5789999987766666666554333233344442 3445555555 888999988642
Q ss_pred CCCCccceeeeeeecCccccEEEe
Q 011732 309 ASPECNLTPNCAYHMGEIAVSIRK 332 (478)
Q Consensus 309 ~~~~~~L~~~~~fhlGd~vt~~~~ 332 (478)
+ ..|.....+..|..++++..
T Consensus 307 -~--g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 307 -T--GLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred -C--CcEEEccccccCCCceEEEE
Confidence 1 14677778888888888865
No 11
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.063 Score=53.43 Aligned_cols=190 Identities=15% Similarity=0.107 Sum_probs=124.8
Q ss_pred CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCC
Q 011732 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAI 94 (478)
Q Consensus 15 ~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~ 94 (478)
.++..++.|+|.++.++|.+ |-++++|+|-.+.+..-.+ ...--+++ +.|.++.-+++|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvss-------WDgslrlYdv~~~~l~~~~--~~~~plL~---c~F~d~~~~~~G~~------- 73 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSS-------WDGSLRLYDVPANSLKLKF--KHGAPLLD---CAFADESTIVTGGL------- 73 (323)
T ss_pred hhceeeEEEcCcCCcEEEEe-------ccCcEEEEeccchhhhhhe--ecCCceee---eeccCCceEEEecc-------
Confidence 34678899998888888886 4578999998776543333 22333444 44457777888865
Q ss_pred CCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccccc
Q 011732 95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET 174 (478)
Q Consensus 95 ~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 174 (478)
.|.|..++++-. +.
T Consensus 74 ---------dg~vr~~Dln~~-------------------------------------------~~-------------- 87 (323)
T KOG1036|consen 74 ---------DGQVRRYDLNTG-------------------------------------------NE-------------- 87 (323)
T ss_pred ---------CceEEEEEecCC-------------------------------------------cc--------------
Confidence 688999999720 00
Q ss_pred ceEEEEEEEecCCceEEEeee--CCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCc
Q 011732 175 WQLRLAYSTTWPGMVLAICPY--LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDG 251 (478)
Q Consensus 175 ~~l~l~~~~~~~G~V~ai~~~--~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~S 251 (478)
..+ -...++|.+|+.. .|. ++.|. +++|.+|+... + ..+..++.+=-|-++++.+|+++||..-+.
T Consensus 88 ~~i-----gth~~~i~ci~~~~~~~~-vIsgsWD~~ik~wD~R~--~---~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~ 156 (323)
T KOG1036|consen 88 DQI-----GTHDEGIRCIEYSYEVGC-VISGSWDKTIKFWDPRN--K---VVVGTFDQGKKVYCMDVSGNRLVVGTSDRK 156 (323)
T ss_pred eee-----ccCCCceEEEEeeccCCe-EEEcccCccEEEEeccc--c---ccccccccCceEEEEeccCCEEEEeecCce
Confidence 011 2456888999877 577 66665 88899999885 1 122334445579999999999999999999
Q ss_pred EEEEEEeccCceEEEEecCC-CCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 252 ILFYSYHEDARKLEQIYCDP-SQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 252 v~ll~y~~~~~~L~~varD~-~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
|..+..+.-..-+ --|+. ....+.++.++ ....|+++-.+|-+.+=-.+
T Consensus 157 v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 157 VLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred EEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 9887755322211 11222 22234455544 44588999999987654333
No 12
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.26 E-value=0.17 Score=47.38 Aligned_cols=193 Identities=16% Similarity=0.124 Sum_probs=111.4
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~ 95 (478)
.....+.++|+.+.++++.. ...++++|..+.+.+..+..... .+.++.. ..+..++++|+.
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~-------~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~~~l~~~~~-------- 71 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSG-------DGTIKVWDLETGELLRTLKGHTG-PVRDVAA--SADGTYLASGSS-------- 71 (289)
T ss_pred CCEEEEEEcCCCCEEEEeec-------CcEEEEEEeeCCCcEEEEecCCc-ceeEEEE--CCCCCEEEEEcC--------
Confidence 35678899999888777653 35799999887765555443222 2222222 123357776643
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
.|.+++|++... .
T Consensus 72 --------~~~i~i~~~~~~-----------------------------------------------------------~ 84 (289)
T cd00200 72 --------DKTIRLWDLETG-----------------------------------------------------------E 84 (289)
T ss_pred --------CCeEEEEEcCcc-----------------------------------------------------------c
Confidence 578999998721 0
Q ss_pred eEEEEEEEecCCceEEEeeeCC-ceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CCEEEEeecCCc
Q 011732 176 QLRLAYSTTWPGMVLAICPYLD-RYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVGDCRDG 251 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~g-~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n~IlvgD~~~S 251 (478)
.+..+ ....++|.++.-..+ .+++++. ...+.+|++... +.+.... .....+.++... +.++++|+.-..
T Consensus 85 ~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 85 CVRTL--TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLR--GHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred ceEEE--eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEEEEec--cCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 11111 134457888876654 5344444 577999998741 2122221 223345666554 467777765667
Q ss_pred EEEEEEeccCceEEEEecCCCCceeEEEEeecCC-eEEEeCCCCcEEEEecC
Q 011732 252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 252 v~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~-~~l~aD~~gNl~vl~~~ 302 (478)
+.++..+ ..+....-. .....+.++.+..++ .++++..+|.+.++...
T Consensus 159 i~i~d~~--~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 159 IKLWDLR--TGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred EEEEEcc--ccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 7776543 222222211 233356677765444 67777779999999875
No 13
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.04 E-value=0.0078 Score=62.79 Aligned_cols=178 Identities=16% Similarity=0.152 Sum_probs=101.2
Q ss_pred eeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCC
Q 011732 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGS 122 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~ 122 (478)
-..|+|+|-+|+.++.++.+ ++.+.|++.- .++...+++|++ .|+|+-|++..
T Consensus 279 D~~lKlwDtETG~~~~~f~~--~~~~~cvkf~-pd~~n~fl~G~s----------------d~ki~~wDiRs-------- 331 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHL--DKVPTCVKFH-PDNQNIFLVGGS----------------DKKIRQWDIRS-------- 331 (503)
T ss_pred ceeeeeeccccceEEEEEec--CCCceeeecC-CCCCcEEEEecC----------------CCcEEEEeccc--------
Confidence 35799999999999887765 4677775432 123478888966 68999999973
Q ss_pred ccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEec-CCceEEEeeeC-CceE
Q 011732 123 MTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTW-PGMVLAICPYL-DRYF 200 (478)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~-~G~V~ai~~~~-g~~L 200 (478)
.+ ++++.+. =|+|..|.-+. |+++
T Consensus 332 --------------------~k----------------------------------vvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 332 --------------------GK----------------------------------VVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred --------------------hH----------------------------------HHHHHHhhhhheeeeEEccCCceE
Confidence 12 2333343 37888888775 4546
Q ss_pred EEEe-CCeEEEEeeCCCCcccceeeeeccc-ceeEEEEEEeCCEEEEeecCCcEEEEEEecc--CceEEEEecCCCCcee
Q 011732 201 LASA-GNAFYVCGFPNDNPQRVRRFAVGRT-RFMIMLLTAHFTRIAVGDCRDGILFYSYHED--ARKLEQIYCDPSQRLV 276 (478)
Q Consensus 201 l~av-g~~l~v~~l~~~~~~~L~~~a~~~~-~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~--~~~L~~varD~~~~~v 276 (478)
+.++ -+.+.+|+|+..-. ++-.+...+ .++...+...++.+++=.+-.-+.++.-.+. -++-....+-..+-..
T Consensus 358 issSDdks~riWe~~~~v~--ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVP--IKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred eeeccCccEEEEEcCCCcc--chhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 6665 56699999986321 222222111 1223334444444433333333333321110 0000111122222233
Q ss_pred EEEEe-ecCCeEEEeCCCCcEEEEecCC
Q 011732 277 ADCVL-MDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 277 ta~~~-ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+.+.| .|.++++.+|.+|+++++.+..
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechh
Confidence 44555 4666888999999999999865
No 14
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.00 E-value=0.13 Score=56.76 Aligned_cols=202 Identities=12% Similarity=0.140 Sum_probs=123.7
Q ss_pred eeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecc------
Q 011732 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQ------ 116 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~------ 116 (478)
..++++++..|.+.+-+++-. +++|.+.+ .++.||++||- .|.|.+|++-+..
T Consensus 393 ~~SikiWn~~t~kciRTi~~~---y~l~~~Fv--pgd~~Iv~G~k----------------~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCG---YILASKFV--PGDRYIVLGTK----------------NGELQVFDLASASLVETIR 451 (888)
T ss_pred CCcEEEEEccCcceeEEeccc---cEEEEEec--CCCceEEEecc----------------CCceEEEEeehhhhhhhhh
Confidence 358999999999988877654 66665444 78899999987 3444555443210
Q ss_pred -----------cCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEE--EE
Q 011732 117 -----------NSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAY--ST 183 (478)
Q Consensus 117 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~--~~ 183 (478)
.+|.++ |--+.+..+++.++|.=..+ ||- . ....|.+.| ..
T Consensus 452 AHdgaIWsi~~~pD~~g--~vT~saDktVkfWdf~l~~~-~~g---t--------------------~~k~lsl~~~rtL 505 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDNKG--FVTGSADKTVKFWDFKLVVS-VPG---T--------------------QKKVLSLKHTRTL 505 (888)
T ss_pred ccccceeeeeecCCCCc--eEEecCCcEEEEEeEEEEec-cCc---c--------------------cceeeeeccceEE
Confidence 011111 11112223444445522221 111 1 112355555 34
Q ss_pred ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCccccee-eeecccceeEEEEEEe--CCEEEEeecCCcEEEEEEe
Q 011732 184 TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRR-FAVGRTRFMIMLLTAH--FTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~-~a~~~~~~~i~sL~~~--~n~IlvgD~~~Sv~ll~y~ 258 (478)
+++.-|.|+..-. |+||+++. ++++.||-++. |+- +..|....++.+|+.. .+.|+-|-+-+.|-++..+
T Consensus 506 el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-----lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 506 ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-----LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred eccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-----eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 5678888887553 78788885 99999999985 432 3566666677777654 6888999999999998766
Q ss_pred ccCceEEEEecCCCCceeEEEEeecCC-eEEEeCCCCcEEEE
Q 011732 259 EDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVL 299 (478)
Q Consensus 259 ~~~~~L~~varD~~~~~vta~~~ld~~-~~l~aD~~gNl~vl 299 (478)
-.+=.-..+|-| -.|+++.|+..+ .|..+-++|-+--+
T Consensus 581 FGDCHKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 581 FGDCHKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred cchhhhhhhccc---CceeEEEEcccceeEEEecCcceEEee
Confidence 543333333322 257888988765 67777777765533
No 15
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.75 E-value=0.39 Score=48.57 Aligned_cols=189 Identities=10% Similarity=-0.033 Sum_probs=108.8
Q ss_pred EeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEE-----EEEECCCCCceEEEEEEEECCeeEEEEee
Q 011732 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVL-----SSFKLELGETGKSMELVRVGHEQVLVVGT 86 (478)
Q Consensus 12 i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i-----~~~~l~~~E~~~s~~~~~l~~~~~l~VGT 86 (478)
++-...|+.++++|+.+.++|.... ...|.++|..+...+ .....+.++.+-.+.+. .+..++.|..
T Consensus 122 ~~~~~~~~~~~~~p~g~~l~v~~~~------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~--pdg~~lyv~~ 193 (330)
T PRK11028 122 IEGLEGCHSANIDPDNRTLWVPCLK------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH--PNQQYAYCVN 193 (330)
T ss_pred ccCCCcccEeEeCCCCCEEEEeeCC------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC--CCCCEEEEEe
Confidence 3334568999999999888776542 347889987663322 22455666666554332 3446776654
Q ss_pred ecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCC
Q 011732 87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG 166 (478)
Q Consensus 87 ~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 166 (478)
. ..+.|.+|++... .
T Consensus 194 ~---------------~~~~v~v~~~~~~--------------------------------------------~------ 208 (330)
T PRK11028 194 E---------------LNSSVDVWQLKDP--------------------------------------------H------ 208 (330)
T ss_pred c---------------CCCEEEEEEEeCC--------------------------------------------C------
Confidence 3 2689999999720 0
Q ss_pred ccccccccceEEEEEEEe-----cCCceE--EEee-eCCceEEEEe--CCeEEEEeeCCCCcccceeeeeccccee--EE
Q 011732 167 IKLEETETWQLRLAYSTT-----WPGMVL--AICP-YLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFM--IM 234 (478)
Q Consensus 167 ~~~~~~~~~~l~l~~~~~-----~~G~V~--ai~~-~~g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~--i~ 234 (478)
.+++++.+.. ..++-+ +|.- =+|++|.++. .+.|.+|++..++. .++.++...+... ..
T Consensus 209 --------~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-~~~~~~~~~~~~~p~~~ 279 (330)
T PRK11028 209 --------GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS-VLSFEGHQPTETQPRGF 279 (330)
T ss_pred --------CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC-eEEEeEEEeccccCCce
Confidence 1222222221 112211 2221 1367677763 35699999976432 2443343332222 23
Q ss_pred EEEEeCCEEEEeec-CCcEEEEEEeccCceEEEEecCCCCceeEEEEee
Q 011732 235 LLTAHFTRIAVGDC-RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM 282 (478)
Q Consensus 235 sL~~~~n~IlvgD~-~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l 282 (478)
.++..+.+++|+.. -..|.+++.+.+.+.|..+.+=....+..++.+|
T Consensus 280 ~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~~ 328 (330)
T PRK11028 280 NIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSVL 328 (330)
T ss_pred EECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEEE
Confidence 44556889999876 5579999888777778776654345555555543
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.69 E-value=0.26 Score=47.99 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=61.2
Q ss_pred ceEEEeeeC-CceEEEEeCCe--EEEEeeCCCC-cccceeeeeccc-ceeEEEEEEe--CCEEEEeecCCcEEEEEEecc
Q 011732 188 MVLAICPYL-DRYFLASAGNA--FYVCGFPNDN-PQRVRRFAVGRT-RFMIMLLTAH--FTRIAVGDCRDGILFYSYHED 260 (478)
Q Consensus 188 ~V~ai~~~~-g~~Ll~avg~~--l~v~~l~~~~-~~~L~~~a~~~~-~~~i~sL~~~--~n~IlvgD~~~Sv~ll~y~~~ 260 (478)
+|.++.-.. |. .++|++++ .|+|++-... ...|.|+.-+.. ..+|.+.... +.+|+..-.-+-+.+++ .+
T Consensus 169 ~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn--~~ 245 (311)
T KOG0315|consen 169 SIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN--TD 245 (311)
T ss_pred ceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe--cC
Confidence 444454443 56 56777666 7999886522 223666543333 2356555433 45555556666666654 44
Q ss_pred CceEEEEecCCCCceeEEEEeecCCeEEEe-CCCCcEEEEe
Q 011732 261 ARKLEQIYCDPSQRLVADCVLMDVDTAVVS-DRKGSIAVLS 300 (478)
Q Consensus 261 ~~~L~~varD~~~~~vta~~~ld~~~~l~a-D~~gNl~vl~ 300 (478)
+--..+.--+-..||+-.|.|-.++.||++ ..++-..+..
T Consensus 246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred CceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 442234444566799999999766655554 4454444333
No 17
>PTZ00420 coronin; Provisional
Probab=96.66 E-value=1 Score=49.57 Aligned_cols=116 Identities=8% Similarity=0.044 Sum_probs=61.4
Q ss_pred cCCceEEEeee-CCceEEEEe--CCeEEEEeeCCCCcccceeeeecccc--eeEEEE---EEeCCEEEEeecC----CcE
Q 011732 185 WPGMVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTR--FMIMLL---TAHFTRIAVGDCR----DGI 252 (478)
Q Consensus 185 ~~G~V~ai~~~-~g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~--~~i~sL---~~~~n~IlvgD~~----~Sv 252 (478)
..+.|+++.-- .|. ++++. +.+|++|++... +.+.....+... ..+..+ ...+++|+.+..- +.|
T Consensus 166 ~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg--~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~V 242 (568)
T PTZ00420 166 MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ--EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREM 242 (568)
T ss_pred cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC--cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEE
Confidence 45778888754 366 44443 567999999862 223322222221 112222 1235677764333 357
Q ss_pred EEEEEeccCceEEEEecCCCCceeEEEEeecCC-eEEEeCCCCcEEEEecCC
Q 011732 253 LFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 253 ~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~-~~l~aD~~gNl~vl~~~~ 303 (478)
.++..+.....+..+.-|..+-.++..-.-+.+ .++++-.+++|+++++..
T Consensus 243 kLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 243 KLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 776554333444444334433322222221222 677888999999999854
No 18
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.53 E-value=0.39 Score=53.54 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=83.3
Q ss_pred eEEEEEE-EecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccce-eEEEEEEeCCEEEEeecCCcEE
Q 011732 176 QLRLAYS-TTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRF-MIMLLTAHFTRIAVGDCRDGIL 253 (478)
Q Consensus 176 ~l~l~~~-~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~-~i~sL~~~~n~IlvgD~~~Sv~ 253 (478)
||.+++- .+++.-|+|+++.++. ..+|.|++|++|...+. + ++++..+- .|.-+...|+.++.+|....+.
T Consensus 65 kl~ll~vs~~lp~~I~alas~~~~-vy~A~g~~i~~~~rgk~----i--~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~ 137 (910)
T KOG1539|consen 65 KLNLLFVSKPLPDKITALASDKDY-VYVASGNKIYAYARGKH----I--RHTTLLHGAKVHLLLPFGEHLIAVDISNILF 137 (910)
T ss_pred ceEEEEecCCCCCceEEEEecCce-EEEecCcEEEEEEccce----E--EEEeccccceEEEEeeecceEEEEEccCcEE
Confidence 6777774 5799999999999876 99999999999998852 2 23333333 6888889999999999999999
Q ss_pred EEEEecc-Cc-----eEEEEecCCCCceeEEEEeecC--CeEEEeCCCCcEEEEecCC
Q 011732 254 FYSYHED-AR-----KLEQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 254 ll~y~~~-~~-----~L~~varD~~~~~vta~~~ld~--~~~l~aD~~gNl~vl~~~~ 303 (478)
++..... .. .+..+-.|. ++++.-.+- +.++++-..|++.++.+..
T Consensus 138 vw~~s~~~~e~~l~~~~~~~~~~~----Ital~HP~TYLNKIvvGs~~G~lql~Nvrt 191 (910)
T KOG1539|consen 138 VWKTSSIQEELYLQSTFLKVEGDF----ITALLHPSTYLNKIVVGSSQGRLQLWNVRT 191 (910)
T ss_pred EEEeccccccccccceeeeccCCc----eeeEecchhheeeEEEeecCCcEEEEEecc
Confidence 9876541 11 122222221 444443221 4788889999999998754
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.45 E-value=1.2 Score=49.48 Aligned_cols=195 Identities=14% Similarity=0.209 Sum_probs=119.2
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCC
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPS 97 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~ 97 (478)
...++|+|+++.++.++.+ +.|+++|-.++-++.+|. |+-..+..+.|.....+++..+.
T Consensus 353 i~~l~YSpDgq~iaTG~eD-------gKVKvWn~~SgfC~vTFt----eHts~Vt~v~f~~~g~~llssSL--------- 412 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAED-------GKVKVWNTQSGFCFVTFT----EHTSGVTAVQFTARGNVLLSSSL--------- 412 (893)
T ss_pred eeeEEECCCCcEEEeccCC-------CcEEEEeccCceEEEEec----cCCCceEEEEEEecCCEEEEeec---------
Confidence 3467788888877777653 468999988777766665 45555566666655555555553
Q ss_pred CCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceE
Q 011732 98 GEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQL 177 (478)
Q Consensus 98 ~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 177 (478)
-|++-.|++++-+| .|+++. |.. ..+
T Consensus 413 ------DGtVRAwDlkRYrN----------------fRTft~-------------------P~p-------------~Qf 438 (893)
T KOG0291|consen 413 ------DGTVRAWDLKRYRN----------------FRTFTS-------------------PEP-------------IQF 438 (893)
T ss_pred ------CCeEEeeeecccce----------------eeeecC-------------------CCc-------------eee
Confidence 68999999985321 111111 110 011
Q ss_pred EEEEEEecCCceEEEeeeCCceEEEEeCCe---EEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEE
Q 011732 178 RLAYSTTWPGMVLAICPYLDRYFLASAGNA---FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILF 254 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~---l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~l 254 (478)
...|+.+- |. ||+|-+.. |+||+++. .|+|-..+=+..|..-.+++..++.++-|---+-|-+
T Consensus 439 ----------scvavD~s-Ge-lV~AG~~d~F~IfvWS~qT--GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 439 ----------SCVAVDPS-GE-LVCAGAQDSFEIFVWSVQT--GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred ----------eEEEEcCC-CC-EEEeeccceEEEEEEEeec--CeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence 11122211 44 55554443 68888876 4655544445566666678888998888877777777
Q ss_pred EEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 255 YSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 255 l~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
+..=...++.+.+. .+..++++.|- |...+.++--+|+|.+++...
T Consensus 505 W~if~s~~~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 505 WDIFSSSGTVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred EEeeccCceeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 64333333333332 23456777774 566899999999999998654
No 20
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.40 E-value=2.6 Score=48.32 Aligned_cols=195 Identities=7% Similarity=0.046 Sum_probs=107.5
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
....++++|..+-+++.+. .-+.|+++|..+++.+..++-. ...+.|+..- -.+..+|+.|..
T Consensus 534 ~v~~l~~~~~~~~~las~~------~Dg~v~lWd~~~~~~~~~~~~H-~~~V~~l~~~-p~~~~~L~Sgs~--------- 596 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSN------FEGVVQVWDVARSQLVTEMKEH-EKRVWSIDYS-SADPTLLASGSD--------- 596 (793)
T ss_pred ceeeEEeccCCCCEEEEEe------CCCeEEEEECCCCeEEEEecCC-CCCEEEEEEc-CCCCCEEEEEcC---------
Confidence 4556777776554444433 1358999999888877665422 2234444331 123467777743
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
-|.|.+|++... ..
T Consensus 597 -------Dg~v~iWd~~~~-----------------------------------------------------------~~ 610 (793)
T PLN00181 597 -------DGSVKLWSINQG-----------------------------------------------------------VS 610 (793)
T ss_pred -------CCEEEEEECCCC-----------------------------------------------------------cE
Confidence 578999998620 01
Q ss_pred EEEEEEEecCCceEEEeee--CCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE-eCCEEEEeecCCcE
Q 011732 177 LRLAYSTTWPGMVLAICPY--LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA-HFTRIAVGDCRDGI 252 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~--~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~-~~n~IlvgD~~~Sv 252 (478)
+ ......+.|.++.-. .|.+|++|. ...|++|++.... ..+.. +......|.++.. .+++|+.|..-..|
T Consensus 611 ~---~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-~~~~~--~~~h~~~V~~v~f~~~~~lvs~s~D~~i 684 (793)
T PLN00181 611 I---GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-LPLCT--MIGHSKTVSYVRFVDSSTLVSSSTDNTL 684 (793)
T ss_pred E---EEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-ccceE--ecCCCCCEEEEEEeCCCEEEEEECCCEE
Confidence 1 112234567776543 356455554 5569999997521 11211 1122224555554 35788888777778
Q ss_pred EEEEEecc-----CceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 253 LFYSYHED-----ARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 253 ~ll~y~~~-----~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
.++..+.. ...+..+... ..++..+.+- +...++++..+|.++++...
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 77665421 1122222221 2233333332 34477777889999998864
No 21
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.05 E-value=2.1 Score=43.89 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=108.7
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCC--C--CcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL--S--GSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG 91 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~--t--~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g 91 (478)
..|+.+.++|+.+.++|..-. .-.|.+++-. + .+....+.++++.-+--+.+.. +++.++++. -
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~-e---- 211 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLG------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVN-E---- 211 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETT------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEE-T----
T ss_pred ccceeEEECCCCCEEEEEecC------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEec-C----
Confidence 468899999999988776421 2356666543 3 2335667888888876554321 223344443 1
Q ss_pred CCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccc
Q 011732 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (478)
..+.|.+|++... +
T Consensus 212 -----------~s~~v~v~~~~~~--------------------------------------------~----------- 225 (345)
T PF10282_consen 212 -----------LSNTVSVFDYDPS--------------------------------------------D----------- 225 (345)
T ss_dssp -----------TTTEEEEEEEETT--------------------------------------------T-----------
T ss_pred -----------CCCcEEEEeeccc--------------------------------------------C-----------
Confidence 3678889988720 0
Q ss_pred cccceEEEEEEEec-----CC--ceEEEeee-CCceEEEEe--CCeEEEEeeCCCCcccceeeeeccc-ceeEEEEEE--
Q 011732 172 TETWQLRLAYSTTW-----PG--MVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRT-RFMIMLLTA-- 238 (478)
Q Consensus 172 ~~~~~l~l~~~~~~-----~G--~V~ai~~~-~g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~-~~~i~sL~~-- 238 (478)
.+++.+..... .| ...+|.-- +|+||.++. .+.|.+|++..++ ..|+.+..+.+ ......+..
T Consensus 226 ---g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~-g~l~~~~~~~~~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 226 ---GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT-GTLTLVQTVPTGGKFPRHFAFSP 301 (345)
T ss_dssp ---TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT-TTEEEEEEEEESSSSEEEEEE-T
T ss_pred ---CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC-CceEEEEEEeCCCCCccEEEEeC
Confidence 13333332221 12 24444433 477677765 5569999996532 33766655443 223455544
Q ss_pred eCCEEEEeec-CCcEEEEEEeccCceEEEEecCCCCceeEEEE
Q 011732 239 HFTRIAVGDC-RDGILFYSYHEDARKLEQIYCDPSQRLVADCV 280 (478)
Q Consensus 239 ~~n~IlvgD~-~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~ 280 (478)
.+++++|+.- -..|.+++.+.+.+.|..+++...--..+|+.
T Consensus 302 ~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 302 DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 7899999985 55899999999999999988654433344443
No 22
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.94 E-value=0.83 Score=47.94 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=40.7
Q ss_pred EEEecCCceEEEeeeCC-ceEEEE-eCCeEEEEeeCCCCcccceeeeecccce-eEEEEEEeC--CEEEEee
Q 011732 181 YSTTWPGMVLAICPYLD-RYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRF-MIMLLTAHF--TRIAVGD 247 (478)
Q Consensus 181 ~~~~~~G~V~ai~~~~g-~~Ll~a-vg~~l~v~~l~~~~~~~L~~~a~~~~~~-~i~sL~~~~--n~IlvgD 247 (478)
...-.+|||.|+...+. .||+++ +-.+||+|++.. ..+|... +.+. .|++|+..+ ..|+-|-
T Consensus 76 q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss--G~LL~v~---~aHYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS--GILLNVL---SAHYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred hhcccccceeeeecCCCceEEEeecccCcEEEEEecc--ccHHHHH---HhhccceeEEEEeCCCcEEEecC
Confidence 34567999999999985 546666 677799999986 3444432 2333 477887654 3444443
No 23
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.88 E-value=1.7 Score=43.53 Aligned_cols=196 Identities=8% Similarity=0.037 Sum_probs=126.6
Q ss_pred CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCC-CcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCC
Q 011732 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS-GSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPA 93 (478)
Q Consensus 15 ~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t-~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~ 93 (478)
..+..-|+|+|...-++++.+ |-+.||+++-.. +..+..-.-.-+--++|++ |.=++ ..+..|.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~S------WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~-Wsddg-skVf~g~------- 91 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGS------WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVC-WSDDG-SKVFSGG------- 91 (347)
T ss_pred ccchheeEeccccCceEEecc------cCCceEEEEEecCCcccchhhhccCCCeEEEE-EccCC-ceEEeec-------
Confidence 347788999997776666655 556888888543 4443322222223444432 32222 4455553
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
+.|.+.+|++...
T Consensus 92 ---------~Dk~~k~wDL~S~---------------------------------------------------------- 104 (347)
T KOG0647|consen 92 ---------CDKQAKLWDLASG---------------------------------------------------------- 104 (347)
T ss_pred ---------cCCceEEEEccCC----------------------------------------------------------
Confidence 4577889999731
Q ss_pred cceEEEEEEEecCCceEEEeeeCCceE--EEEe---CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeec
Q 011732 174 TWQLRLAYSTTWPGMVLAICPYLDRYF--LASA---GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDC 248 (478)
Q Consensus 174 ~~~l~l~~~~~~~G~V~ai~~~~g~~L--l~av---g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~ 248 (478)
.+..+ -..++||.++.-+++. + +.+. .++|..|+.+.. .++....+|=.+..+++.....+|+..
T Consensus 105 --Q~~~v--~~Hd~pvkt~~wv~~~-~~~cl~TGSWDKTlKfWD~R~~-----~pv~t~~LPeRvYa~Dv~~pm~vVata 174 (347)
T KOG0647|consen 105 --QVSQV--AAHDAPVKTCHWVPGM-NYQCLVTGSWDKTLKFWDTRSS-----NPVATLQLPERVYAADVLYPMAVVATA 174 (347)
T ss_pred --Ceeee--eecccceeEEEEecCC-CcceeEecccccceeecccCCC-----CeeeeeeccceeeehhccCceeEEEec
Confidence 11222 3567899999988875 4 3333 456888888862 445666788889999999999999999
Q ss_pred CCcEEEEEEeccCceEEEEecCCCCceeEEEE-eecCCeEEEeCCCCcEEEEecCC
Q 011732 249 RDGILFYSYHEDARKLEQIYCDPSQRLVADCV-LMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 249 ~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~-~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
-++|.++..+..+..+..+. .+....+.++. |.|.+.++.+-..|-+.+.-.++
T Consensus 175 ~r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~ 229 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDD 229 (347)
T ss_pred CCcEEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCceEeeeecceEEEEecCC
Confidence 99999998765444333322 33444455554 45777778888889888887765
No 24
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=95.77 E-value=0.58 Score=47.01 Aligned_cols=124 Identities=10% Similarity=0.099 Sum_probs=76.1
Q ss_pred CCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--e-CCEEEEeecCCcEEEEEEecc
Q 011732 186 PGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--H-FTRIAVGDCRDGILFYSYHED 260 (478)
Q Consensus 186 ~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~-~n~IlvgD~~~Sv~ll~y~~~ 260 (478)
--||+++|--+ |+.|+.+. ..++.+|++... ..|+.+ +++++|....- . .|+.++.=+-+|-++..|...
T Consensus 65 ~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g--s~l~ri---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~ 139 (405)
T KOG1273|consen 65 VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG--SPLKRI---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP 139 (405)
T ss_pred ccceeEEEecCCCCEeeeecCCceeEEEeccCC--CceeEE---EccCccceeeeccccCCeEEEEEecCCcEEEEecCC
Confidence 35788888665 55355443 677999999863 235543 33445544443 3 467766666678888888753
Q ss_pred CceEEEEecCCCCceeEEEEeecC--CeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCc
Q 011732 261 ARKLEQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGE 325 (478)
Q Consensus 261 ~~~L~~varD~~~~~vta~~~ld~--~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd 325 (478)
..++...-.|-....+.++.+.|. ..++++-..|-|.++... .++.++.|.+-.
T Consensus 140 ~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~-----------t~e~vas~rits 195 (405)
T KOG1273|consen 140 KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE-----------TLECVASFRITS 195 (405)
T ss_pred ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc-----------hheeeeeeeech
Confidence 233333333333444445555554 388888999999998753 466777776554
No 25
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.74 E-value=2.8 Score=44.35 Aligned_cols=191 Identities=12% Similarity=0.112 Sum_probs=123.4
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCC-ceEEEEEEEECCeeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGE-TGKSMELVRVGHEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E-~~~s~~~~~l~~~~~l~VGT~~~~g~~~~ 95 (478)
..+.+-|+|.-+..++.+++. ..++++|..+..+ .+++...| ++-|..+. -..+..++-| +|
T Consensus 112 pv~~~~f~~~d~t~l~s~sDd------~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~-~~~~hivvtG-sY------- 174 (487)
T KOG0310|consen 112 PVHVTKFSPQDNTMLVSGSDD------KVVKYWDLSTAYV--QAELSGHTDYVRCGDIS-PANDHIVVTG-SY------- 174 (487)
T ss_pred ceeEEEecccCCeEEEecCCC------ceEEEEEcCCcEE--EEEecCCcceeEeeccc-cCCCeEEEec-CC-------
Confidence 456778899999999998754 4788889888774 66666554 45554433 2233455544 22
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
-|.|.+|+.... |
T Consensus 175 --------Dg~vrl~DtR~~--------------------------------------------------------~--- 187 (487)
T KOG0310|consen 175 --------DGKVRLWDTRSL--------------------------------------------------------T--- 187 (487)
T ss_pred --------CceEEEEEeccC--------------------------------------------------------C---
Confidence 578899998721 0
Q ss_pred eEEEEEEEecCCceEEEeeeCC-ceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeC--CEEEEeecCCcE
Q 011732 176 QLRLAYSTTWPGMVLAICPYLD-RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF--TRIAVGDCRDGI 252 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~g-~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~--n~IlvgD~~~Sv 252 (478)
.-+.+.+..-||-.|+.+.+ ..++.|.|+.+.||++... .|++.... ..+=.||+|.... .+++-|-+-+-|
T Consensus 188 --~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G-~qll~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 188 --SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG-GQLLTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHV 262 (487)
T ss_pred --ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC-ceehhhhh--cccceEEEEEeecCCceEeecccccce
Confidence 12445567789999999986 5355556889999999852 34444322 2334688887664 889999888888
Q ss_pred EEEEEeccCceEEEEecCCCCceeEEEEeecC-CeEEEeCCCCcEEEEe
Q 011732 253 LFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLS 300 (478)
Q Consensus 253 ~ll~y~~~~~~L~~varD~~~~~vta~~~ld~-~~~l~aD~~gNl~vl~ 300 (478)
-+|.+ .+.+++. .=-.|-.+.++.+-++ .+++++=.+|-+.+-+
T Consensus 263 KVfd~--t~~Kvv~--s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 263 KVFDT--TNYKVVH--SWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred EEEEc--cceEEEE--eeecccceeeEEecCCCceEEEecccceeeeeh
Confidence 88763 3444443 3334555666665444 4666666666666553
No 26
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.65 E-value=0.14 Score=49.74 Aligned_cols=119 Identities=17% Similarity=0.201 Sum_probs=85.4
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeee
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTS 87 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~ 87 (478)
-++++.+...+..+-++++.+.+.++ +.++|.|+|+++|+++.+|+++-+=..-|+.. ++.++|.|
T Consensus 177 ~v~sL~~~s~VtSlEvs~dG~ilTia--------~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P----~k~~fVaG-- 242 (334)
T KOG0278|consen 177 EVQSLEFNSPVTSLEVSQDGRILTIA--------YGSSVKFWDAKSFGLLKSYKMPCNVESASLHP----KKEFFVAG-- 242 (334)
T ss_pred EEEEEecCCCCcceeeccCCCEEEEe--------cCceeEEeccccccceeeccCccccccccccC----CCceEEec--
Confidence 35678888889999999988876665 46899999999999999999987644333322 45777766
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCc
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI 167 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (478)
+| -+.++.|+... +
T Consensus 243 ----------ge----d~~~~kfDy~T---------------------------------------------g------- 256 (334)
T KOG0278|consen 243 ----------GE----DFKVYKFDYNT---------------------------------------------G------- 256 (334)
T ss_pred ----------Cc----ceEEEEEeccC---------------------------------------------C-------
Confidence 12 35677777762 1
Q ss_pred cccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCe---EEEEeeCC
Q 011732 168 KLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNA---FYVCGFPN 215 (478)
Q Consensus 168 ~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~---l~v~~l~~ 215 (478)
..+.. +-+...|||.||.--.++ .+.|+|+. |++|....
T Consensus 257 -------eEi~~-~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 257 -------EEIGS-YNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred -------ceeee-cccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecC
Confidence 12222 345678999999988888 88888875 77776654
No 27
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.42 E-value=0.72 Score=51.29 Aligned_cols=173 Identities=11% Similarity=0.099 Sum_probs=114.9
Q ss_pred eEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCc
Q 011732 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSM 123 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~ 123 (478)
-++||+++..-+.+..|.- ++.|+|++.-.. ++.|++=|+- -|++-+|.|.
T Consensus 390 KTVRLWh~~~~~CL~~F~H--ndfVTcVaFnPv-DDryFiSGSL----------------D~KvRiWsI~---------- 440 (712)
T KOG0283|consen 390 KTVRLWHPGRKECLKVFSH--NDFVTCVAFNPV-DDRYFISGSL----------------DGKVRLWSIS---------- 440 (712)
T ss_pred ccEEeecCCCcceeeEEec--CCeeEEEEeccc-CCCcEeeccc----------------ccceEEeecC----------
Confidence 4899999998888877654 578888765332 5689998854 5788899996
Q ss_pred cccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeC-CceEEE
Q 011732 124 TFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLA 202 (478)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~ 202 (478)
+ -++++-.+++.-|+|+|-.. |+|.|+
T Consensus 441 ------------------------------------d----------------~~Vv~W~Dl~~lITAvcy~PdGk~avI 468 (712)
T KOG0283|consen 441 ------------------------------------D----------------KKVVDWNDLRDLITAVCYSPDGKGAVI 468 (712)
T ss_pred ------------------------------------c----------------CeeEeehhhhhhheeEEeccCCceEEE
Confidence 2 13566678889999999775 677777
Q ss_pred Ee-CCeEEEEeeCCCCcccceeeeecccc---------eeEEEEEEe---CCEEEEeecCCcEEEEEEeccCceEEEEec
Q 011732 203 SA-GNAFYVCGFPNDNPQRVRRFAVGRTR---------FMIMLLTAH---FTRIAVGDCRDGILFYSYHEDARKLEQIYC 269 (478)
Q Consensus 203 av-g~~l~v~~l~~~~~~~L~~~a~~~~~---------~~i~sL~~~---~n~IlvgD~~~Sv~ll~y~~~~~~L~~var 269 (478)
|. +...++|.-.. |+.+...... --|+.+... .+.|||...---|-+| +-.+..|++.-|
T Consensus 469 Gt~~G~C~fY~t~~-----lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~--d~~~~~lv~KfK 541 (712)
T KOG0283|consen 469 GTFNGYCRFYDTEG-----LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIY--DGRDKDLVHKFK 541 (712)
T ss_pred EEeccEEEEEEccC-----CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEE--eccchhhhhhhc
Confidence 75 66677777654 1111111111 147777665 3578888776667665 344556666666
Q ss_pred CCCCcee-EEEEe-ecCCeEEEeCCCCcEEEEecCCC
Q 011732 270 DPSQRLV-ADCVL-MDVDTAVVSDRKGSIAVLSCSDR 304 (478)
Q Consensus 270 D~~~~~v-ta~~~-ld~~~~l~aD~~gNl~vl~~~~~ 304 (478)
.+..... +.+.| .|...+|++-.+.++++..++..
T Consensus 542 G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 6554443 33334 35568888888889999987653
No 28
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.40 E-value=5.4 Score=43.86 Aligned_cols=199 Identities=14% Similarity=0.146 Sum_probs=112.8
Q ss_pred eeeEEEeCCC-CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCC-CcEEEEEECCCCCceEEEEEEEECCeeEEEE
Q 011732 7 LNVRKFHLGG-TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS-GSVLSSFKLELGETGKSMELVRVGHEQVLVV 84 (478)
Q Consensus 7 l~ir~i~L~~-tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t-~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~V 84 (478)
-.+|.+...- +...++|+..++++||+.+ -..|+++++.. |=..-.+..+++-.+.+++-+ ++.+.+-+
T Consensus 16 hrcrf~d~~Ps~I~slA~s~kS~~lAvsRt-------~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~ 86 (691)
T KOG2048|consen 16 HRCRFVDYKPSEIVSLAYSHKSNQLAVSRT-------DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSS 86 (691)
T ss_pred EEEEEEeeeccceEEEEEeccCCceeeecc-------CCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEee
Confidence 3455555443 5677899999999888865 34688888865 555566777888888887655 44455555
Q ss_pred eeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCc
Q 011732 85 GTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASC 164 (478)
Q Consensus 85 GT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (478)
| -.|.|.-|++.
T Consensus 87 g-----------------~sg~i~EwDl~--------------------------------------------------- 98 (691)
T KOG2048|consen 87 G-----------------LSGSITEWDLH--------------------------------------------------- 98 (691)
T ss_pred c-----------------CCceEEEEecc---------------------------------------------------
Confidence 5 25666666664
Q ss_pred CCccccccccceEEEEEEEec-CCceEEEeee--CCceEEEEeCCe-EEEEeeCCCCcccceee-eecccceeEEEEEEe
Q 011732 165 DGIKLEETETWQLRLAYSTTW-PGMVLAICPY--LDRYFLASAGNA-FYVCGFPNDNPQRVRRF-AVGRTRFMIMLLTAH 239 (478)
Q Consensus 165 ~g~~~~~~~~~~l~l~~~~~~-~G~V~ai~~~--~g~~Ll~avg~~-l~v~~l~~~~~~~L~~~-a~~~~~~~i~sL~~~ 239 (478)
.++.+...+. .|++-+|+-- +.. |.+++... ++.+..+.+ .+.-. .+.+-...+.+|+-.
T Consensus 99 -----------~lk~~~~~d~~gg~IWsiai~p~~~~-l~IgcddGvl~~~s~~p~---~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 99 -----------TLKQKYNIDSNGGAIWSIAINPENTI-LAIGCDDGVLYDFSIGPD---KITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred -----------cCceeEEecCCCcceeEEEeCCccce-EEeecCCceEEEEecCCc---eEEEEeecccccceEEEEEec
Confidence 2334444454 4666555533 344 66664333 344444431 12211 122223455555544
Q ss_pred C-----------CEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEec
Q 011732 240 F-----------TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 240 ~-----------n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~ 301 (478)
+ ..|-|.|+...=++..... ++.- ++-..+.-|.++.+|.+++++++|..|-+.+.+-
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~---~~d~-l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITM---QLDR-LSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDS 232 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeee---cccc-cccCCceEEEEEEEeecCcEEEecCCceEEEEcc
Confidence 3 3344555444433332111 1111 1122344567888998889999999999887764
No 29
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.34 E-value=4 Score=41.95 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=89.3
Q ss_pred eEEEEEeCCCCcEEEEEECC-CCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCC
Q 011732 44 SDICCVDPLSGSVLSSFKLE-LGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGS 122 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~-~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~ 122 (478)
.+|-++|-++++++++++.- +|...+|.-..... ..|++.= +..+.|-+++|+..+.+
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp--------------~s~t~GdV~l~d~~nl~------ 164 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-NCYLAYP--------------GSTTSGDVVLFDTINLQ------ 164 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCC-CceEEec--------------CCCCCceEEEEEcccce------
Confidence 45889999999999998766 88888776443222 2466532 23468999999998421
Q ss_pred ccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeee-CCceEE
Q 011732 123 MTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPY-LDRYFL 201 (478)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~-~g~~Ll 201 (478)
....++ -.+|++-||+-- +|. ++
T Consensus 165 -----------------------------------------------------~v~~I~--aH~~~lAalafs~~G~-ll 188 (391)
T KOG2110|consen 165 -----------------------------------------------------PVNTIN--AHKGPLAALAFSPDGT-LL 188 (391)
T ss_pred -----------------------------------------------------eeeEEE--ecCCceeEEEECCCCC-EE
Confidence 112222 467888888844 466 55
Q ss_pred EEe---CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEec
Q 011732 202 ASA---GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHE 259 (478)
Q Consensus 202 ~av---g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~ 259 (478)
+.. |.-|+||...+ .+++......-.+..|.+|.- ...++.+.---+.|.+|+...
T Consensus 189 ATASeKGTVIRVf~v~~--G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 189 ATASEKGTVIRVFSVPE--GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEeccCceEEEEEEcCC--ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 554 44479998865 343432222222445666654 357888888899999998764
No 30
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=95.31 E-value=5 Score=42.88 Aligned_cols=202 Identities=10% Similarity=0.120 Sum_probs=119.6
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeec
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSL 88 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~ 88 (478)
+.+.-+++..+...+||.. .++|.+. ....-++|-+|-.++.-+. + ||.+.++..- .+-.||+||+.
T Consensus 401 ~wt~~~~d~~~~~~fhpsg-~va~Gt~-------~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~ys--p~G~~lAvgs~- 467 (626)
T KOG2106|consen 401 EWTKIIEDPAECADFHPSG-VVAVGTA-------TGRWFVLDTETQDLVTIHT-D-NEQLSVVRYS--PDGAFLAVGSH- 467 (626)
T ss_pred eEEEEecCceeEeeccCcc-eEEEeec-------cceEEEEecccceeEEEEe-c-CCceEEEEEc--CCCCEEEEecC-
Confidence 4456677788888899987 7777654 3456778888755554443 4 8887765432 24589999987
Q ss_pred CCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcc
Q 011732 89 SSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIK 168 (478)
Q Consensus 89 ~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 168 (478)
-+.||+|+++. + |
T Consensus 468 ---------------d~~iyiy~Vs~---------------------------------------------~-----g-- 480 (626)
T KOG2106|consen 468 ---------------DNHIYIYRVSA---------------------------------------------N-----G-- 480 (626)
T ss_pred ---------------CCeEEEEEECC---------------------------------------------C-----C--
Confidence 35799999982 1 1
Q ss_pred ccccccceEEEEEEEecCCceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceee---eecc----cce---------
Q 011732 169 LEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRF---AVGR----TRF--------- 231 (478)
Q Consensus 169 ~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~---a~~~----~~~--------- 231 (478)
+++..+.+... .|++++.--. +. .+.+..-.-.+.-|.....+..+++ .+.. ..|
T Consensus 481 ------~~y~r~~k~~g-s~ithLDwS~Ds~-~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t 552 (626)
T KOG2106|consen 481 ------RKYSRVGKCSG-SPITHLDWSSDSQ-FLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGT 552 (626)
T ss_pred ------cEEEEeeeecC-ceeEEeeecCCCc-eEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCc
Confidence 45666665555 8888888444 56 4555433334444433212222221 1110 011
Q ss_pred --eEEEEEEeCCEEEEeecCCcEEEEEEeccC--ceEEEEecCCCCceeEEEEeecCC-eEEEeCCCCcEEEEe
Q 011732 232 --MIMLLTAHFTRIAVGDCRDGILFYSYHEDA--RKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLS 300 (478)
Q Consensus 232 --~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~--~~L~~varD~~~~~vta~~~ld~~-~~l~aD~~gNl~vl~ 300 (478)
-+++-+-.++.+.+||-.--|.+|+|-=.. .-+.+ ---..+.++++.|+-++ .++.+-++-.++..+
T Consensus 553 ~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he--~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 553 DINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHE--YGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred hHHHhhhhhhhhhhhccccCceEEEEccccCCCccccee--eccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 111111236788999999999999983211 12222 22456788999998655 566655666655443
No 31
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.24 E-value=3.1 Score=40.19 Aligned_cols=66 Identities=15% Similarity=0.287 Sum_probs=42.7
Q ss_pred EEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEee
Q 011732 10 RKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGT 86 (478)
Q Consensus 10 r~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT 86 (478)
+.++.+..+..++++|+.+.+++.+.. ...|+++|..+.+.+..++.. ..+.++ .+. +..+++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~~~~--~~~~~~---~~~~dg~~l~~~~ 133 (300)
T TIGR03866 67 GTLPSGPDPELFALHPNGKILYIANED------DNLVTVIDIETRKVLAEIPVG--VEPEGM---AVSPDGKIVVNTS 133 (300)
T ss_pred EeccCCCCccEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEeeCC--CCcceE---EECCCCCEEEEEe
Confidence 446666778899999999877666431 247999999988877666533 223332 222 446676664
No 32
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.13 E-value=1.8 Score=43.36 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=90.2
Q ss_pred cceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCC
Q 011732 41 TCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120 (478)
Q Consensus 41 ~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~ 120 (478)
-|-..|+|+|+..-..+ ..++.++.+.||.+ ...-|+|||+- -++++|++.++.
T Consensus 113 sWD~~ik~wD~R~~~~~--~~~d~~kkVy~~~v----~g~~LvVg~~~----------------r~v~iyDLRn~~---- 166 (323)
T KOG1036|consen 113 SWDKTIKFWDPRNKVVV--GTFDQGKKVYCMDV----SGNRLVVGTSD----------------RKVLIYDLRNLD---- 166 (323)
T ss_pred ccCccEEEEeccccccc--cccccCceEEEEec----cCCEEEEeecC----------------ceEEEEEccccc----
Confidence 46678999999863332 34566678888866 36889999983 368999998642
Q ss_pred CCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeC--Cc
Q 011732 121 GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL--DR 198 (478)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~--g~ 198 (478)
.|- ...+..++-.+.+|+.+. ++
T Consensus 167 -------------------------------------~~~------------------q~reS~lkyqtR~v~~~pn~eG 191 (323)
T KOG1036|consen 167 -------------------------------------EPF------------------QRRESSLKYQTRCVALVPNGEG 191 (323)
T ss_pred -------------------------------------chh------------------hhccccceeEEEEEEEecCCCc
Confidence 011 111223444556677666 56
Q ss_pred eEEEEeCCeEEEEeeCCCCcccceeeeec---------ccceeEEEEEEe--CCEEEEeecCCcEEEEEEecc-CceEEE
Q 011732 199 YFLASAGNAFYVCGFPNDNPQRVRRFAVG---------RTRFMIMLLTAH--FTRIAVGDCRDGILFYSYHED-ARKLEQ 266 (478)
Q Consensus 199 ~Ll~avg~~l~v~~l~~~~~~~L~~~a~~---------~~~~~i~sL~~~--~n~IlvgD~~~Sv~ll~y~~~-~~~L~~ 266 (478)
|.+-++-.+|.|--++.++.-.=++.+|- +.-.+|.+|... -++++-|+. +++ +..|+.. .++|.+
T Consensus 192 y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs-DG~-V~~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 192 YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS-DGI-VNIWDLFNRKRLKQ 269 (323)
T ss_pred eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC-Cce-EEEccCcchhhhhh
Confidence 67777777777766654311001222221 112245555543 244544443 444 4457764 468889
Q ss_pred EecCCCCceeEEEEe
Q 011732 267 IYCDPSQRLVADCVL 281 (478)
Q Consensus 267 varD~~~~~vta~~~ 281 (478)
++++. ..+.+..|
T Consensus 270 ~~~~~--~SI~slsf 282 (323)
T KOG1036|consen 270 LAKYE--TSISSLSF 282 (323)
T ss_pred ccCCC--CceEEEEe
Confidence 99994 44444444
No 33
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=95.04 E-value=1 Score=45.32 Aligned_cols=208 Identities=16% Similarity=0.179 Sum_probs=104.2
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEE-EECCCCCceEEEEEEEECC-eeEEEEee
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSS-FKLELGETGKSMELVRVGH-EQVLVVGT 86 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~-~~l~~~E~~~s~~~~~l~~-~~~l~VGT 86 (478)
..+|-+....-...|||.-.-.+|++.-. +...+.-+++.+-.++.. -+-+.|+.+.|. .|.+ ..||++||
T Consensus 100 l~rirf~spv~~~q~hp~k~n~~va~~~~----~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~---~fdr~g~yIitGt 172 (405)
T KOG1273|consen 100 LKRIRFDSPVWGAQWHPRKRNKCVATIME----ESPVVIDFSDPKHSVLPKDDDGDLNSSASHG---VFDRRGKYIITGT 172 (405)
T ss_pred eeEEEccCccceeeeccccCCeEEEEEec----CCcEEEEecCCceeeccCCCccccccccccc---cccCCCCEEEEec
Confidence 34555555566677787766666665422 234455555422222211 122223333332 4444 48999998
Q ss_pred ecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCC
Q 011732 87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG 166 (478)
Q Consensus 87 ~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 166 (478)
+ +|.|++|+...
T Consensus 173 s----------------KGkllv~~a~t---------------------------------------------------- 184 (405)
T KOG1273|consen 173 S----------------KGKLLVYDAET---------------------------------------------------- 184 (405)
T ss_pred C----------------cceEEEEecch----------------------------------------------------
Confidence 8 89999999872
Q ss_pred ccccccccceEEEEEEEecCCceEEEe----eeCCceEEEEe-CCeEEEEeeCC-CC--c-ccceeee-ec----cccee
Q 011732 167 IKLEETETWQLRLAYSTTWPGMVLAIC----PYLDRYFLASA-GNAFYVCGFPN-DN--P-QRVRRFA-VG----RTRFM 232 (478)
Q Consensus 167 ~~~~~~~~~~l~l~~~~~~~G~V~ai~----~~~g~~Ll~av-g~~l~v~~l~~-~~--~-~~L~~~a-~~----~~~~~ 232 (478)
++.+++..+.. |++|. +++|++|++-. ...|++|++++ +. + +++.+.- +- +++--
T Consensus 185 ----------~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk 253 (405)
T KOG1273|consen 185 ----------LECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK 253 (405)
T ss_pred ----------heeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence 23444444333 44444 34576555544 44479998863 11 0 0111000 00 00001
Q ss_pred EEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 233 IMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 233 i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
-...+-.|.||++|..+ .=.+|.|...-+.|+-+=--+..-....+.---...+|++=..|++++.....
T Consensus 254 ~ccfs~dgeYv~a~s~~-aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSAR-AHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred heeecCCccEEEecccc-ceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeec
Confidence 11113347888888744 34466677777777765322221111111100112566667889998887654
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=94.92 E-value=1.2 Score=45.55 Aligned_cols=64 Identities=9% Similarity=-0.023 Sum_probs=38.9
Q ss_pred EEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeee-ecccceeEEEEEEeCCEEE
Q 011732 178 RLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTAHFTRIA 244 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a-~~~~~~~i~sL~~~~n~Il 244 (478)
++.|..+.+.+|+.+.-.+..||++|. +.+|+.|+-+- .+ |+... =+..+++--.++..+++|+
T Consensus 319 ~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRt--G~-l~~~y~GH~~~Il~f~ls~~~~~vv 384 (399)
T KOG0296|consen 319 TLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDART--GQ-LKFTYTGHQMGILDFALSPQKRLVV 384 (399)
T ss_pred hhheeccCCCceEEEEEcCcchheeeccCceEEeeeccc--cc-eEEEEecCchheeEEEEcCCCcEEE
Confidence 445566778889999988867777664 77788887664 23 43322 1233334444444556665
No 35
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.33 Score=48.46 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=62.8
Q ss_pred eeEEEeCCC----CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEE
Q 011732 8 NVRKFHLGG----TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLV 83 (478)
Q Consensus 8 ~ir~i~L~~----tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~ 83 (478)
|-+++.+.. .-..|-|+|++|++.+.+. .+.+.++|.-++.++.++++.+++.-..+....-.+.+||+
T Consensus 176 PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-------~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl 248 (311)
T KOG1446|consen 176 PFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-------ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL 248 (311)
T ss_pred CceeEccCCCCccceeeeEEcCCCCEEEEEeC-------CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE
Confidence 444555552 4568999999999988864 56899999999999999999998875554333334667777
Q ss_pred EeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 84 VGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 84 VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
.|- ..|+|++|.+.
T Consensus 249 ~gs----------------~dg~i~vw~~~ 262 (311)
T KOG1446|consen 249 SGS----------------DDGTIHVWNLE 262 (311)
T ss_pred Eec----------------CCCcEEEEEcC
Confidence 662 26999999996
No 36
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=94.79 E-value=4.5 Score=43.17 Aligned_cols=147 Identities=15% Similarity=0.236 Sum_probs=85.0
Q ss_pred EEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEE---EEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 20 KVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVL---SSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 20 ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i---~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
-..|||...++++.|- ++-+-|+++.+.... ..|+-.+--+++|++.. ++..+| |+
T Consensus 205 ~a~FHPtd~nliit~G-------k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~--engdvi---Tg--------- 263 (626)
T KOG2106|consen 205 LATFHPTDPNLIITCG-------KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL--ENGDVI---TG--------- 263 (626)
T ss_pred EEEeccCCCcEEEEeC-------CceEEEEEccCCceEEEeeccccccceEEEEEEEc--CCCCEE---ee---------
Confidence 3567887777777764 577888998876544 33444444455554332 333322 33
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
.+.|.|++|...- ++
T Consensus 264 -----DS~G~i~Iw~~~~------------------------------------------------------------~~ 278 (626)
T KOG2106|consen 264 -----DSGGNILIWSKGT------------------------------------------------------------NR 278 (626)
T ss_pred -----cCCceEEEEeCCC------------------------------------------------------------ce
Confidence 2679999998751 23
Q ss_pred EEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccccee------------eeecccceeEEEEEEeCCEEE
Q 011732 177 LRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRR------------FAVGRTRFMIMLLTAHFTRIA 244 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~------------~a~~~~~~~i~sL~~~~n~Il 244 (478)
+..... -.+|.|+++|.++++.|+- -|+.=.+-.|+.+ =+.+++ ++.-... .-+-+..|+||
T Consensus 279 ~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~d---i~vGTtrN~iL 352 (626)
T KOG2106|consen 279 ISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGD---ILVGTTRNFIL 352 (626)
T ss_pred EEeEee-ecCCceEEEEEecCccEee-cCccceEEecccc-ccccccccCchhcCCeeEEecCCCc---EEEeeccceEE
Confidence 322222 7799999999999874555 4443344444432 122332 2221222 12234568888
Q ss_pred EeecCCcEEEEEEe
Q 011732 245 VGDCRDGILFYSYH 258 (478)
Q Consensus 245 vgD~~~Sv~ll~y~ 258 (478)
-|.+.++.++..+.
T Consensus 353 ~Gt~~~~f~~~v~g 366 (626)
T KOG2106|consen 353 QGTLENGFTLTVQG 366 (626)
T ss_pred EeeecCCceEEEEe
Confidence 88888888877654
No 37
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=94.78 E-value=5.5 Score=41.81 Aligned_cols=78 Identities=9% Similarity=0.136 Sum_probs=50.4
Q ss_pred cCCceEEEeee-CCceEEEEeCCe-EEEEeeCCCCcccceeeeecc-cceeEEEEEEeCCEEEEeecCCcEEEEEEeccC
Q 011732 185 WPGMVLAICPY-LDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGR-TRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA 261 (478)
Q Consensus 185 ~~G~V~ai~~~-~g~~Ll~avg~~-l~v~~l~~~~~~~L~~~a~~~-~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~ 261 (478)
..|||.+|.-- +|.||+++.... |.+|++++. +.++....-+ .+...++++..|.++.++ -.++.++.|....
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD~SGt~L~~~--g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFDQSGTYLGIA--GSDLQVYICKKKT 463 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhh--cccceeeccccccceeEEEcCCCCeEEee--cceeEEEEEeccc
Confidence 56899998844 456688888776 999999973 2233322111 123445556668888887 7788898887655
Q ss_pred ceEEE
Q 011732 262 RKLEQ 266 (478)
Q Consensus 262 ~~L~~ 266 (478)
++-.+
T Consensus 464 k~W~~ 468 (506)
T KOG0289|consen 464 KSWTE 468 (506)
T ss_pred cccee
Confidence 43333
No 38
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=94.54 E-value=4.1 Score=43.61 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=89.8
Q ss_pred eEEEEEEEecCC---ceEEEeeeC--CceEEEEe-CCeEEEEeeCCCCcccceee----eecccceeEEEEEE--eCCEE
Q 011732 176 QLRLAYSTTWPG---MVLAICPYL--DRYFLASA-GNAFYVCGFPNDNPQRVRRF----AVGRTRFMIMLLTA--HFTRI 243 (478)
Q Consensus 176 ~l~l~~~~~~~G---~V~ai~~~~--g~~Ll~av-g~~l~v~~l~~~~~~~L~~~----a~~~~~~~i~sL~~--~~n~I 243 (478)
.++++......| +|+. |.|+ |+.|++|+ ...|.+|+.+. +..++. ..+.-+.-|++|.- .|+++
T Consensus 304 q~qVik~k~~~g~Rv~~ts-C~~nrdg~~iAagc~DGSIQ~W~~~~---~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTS-CAWNRDGKLIAAGCLDGSIQIWDKGS---RTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred heeEEeeccCCCcccCcee-eecCCCcchhhhcccCCceeeeecCC---cccccceEeeeccCCCCceeEEEeccccchh
Confidence 344444344333 4554 4453 45244444 55699999864 222221 12233345777764 36666
Q ss_pred EEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCC-eEEEe------CCCCcEEEEecCCCcccCCCCCccce
Q 011732 244 AVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVS------DRKGSIAVLSCSDRLEDNASPECNLT 316 (478)
Q Consensus 244 lvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~-~~l~a------D~~gNl~vl~~~~~~~~s~~~~~~L~ 316 (478)
+-=-.-.++-++..+.-...|..--.=+.+...+.|.|--++ .++.+ +..|+|++|..- .|+
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~-----------t~d 448 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM-----------TLD 448 (641)
T ss_pred hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc-----------cee
Confidence 655666677777665544444433333556667777775333 33333 558889988742 455
Q ss_pred eeeeeecCccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEEec
Q 011732 317 PNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPI 374 (478)
Q Consensus 317 ~~~~fhlGd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~pi 374 (478)
.+....+.. .++.+.. |+| .-++|+.++.+|.+.++-.=
T Consensus 449 ~v~ki~i~~--aSvv~~~---Whp--------------kLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKIDIST--ASVVRCL---WHP--------------KLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEecCCC--ceEEEEe---ecc--------------hhhheeeecCCCceEEEECc
Confidence 555544431 1222222 333 34678888888888776544
No 39
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.37 E-value=1 Score=50.20 Aligned_cols=159 Identities=9% Similarity=0.064 Sum_probs=96.6
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
-++.|+|||.-.-|.+..+ .-..+||++-...++++-++++ |.|++++.. .+-++.||||-
T Consensus 411 fVTcVaFnPvDDryFiSGS------LD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~--PdGk~avIGt~--------- 471 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGS------LDGKVRLWSISDKKVVDWNDLR--DLITAVCYS--PDGKGAVIGTF--------- 471 (712)
T ss_pred eeEEEEecccCCCcEeecc------cccceEEeecCcCeeEeehhhh--hhheeEEec--cCCceEEEEEe---------
Confidence 3455566665555544433 2357999998888898888887 888877654 45689999987
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
.|..++|.....+ +.. .+.
T Consensus 472 -------~G~C~fY~t~~lk----------------------------------------------------~~~--~~~ 490 (712)
T KOG0283|consen 472 -------NGYCRFYDTEGLK----------------------------------------------------LVS--DFH 490 (712)
T ss_pred -------ccEEEEEEccCCe----------------------------------------------------EEE--eee
Confidence 5677788776210 000 012
Q ss_pred EEEEEEEecC-CceEEEeeeCC---ceEEEEeCCeEEEEeeCCCCccc---ceeeeecccceeEEEEEEeCCEEEEeecC
Q 011732 177 LRLAYSTTWP-GMVLAICPYLD---RYFLASAGNAFYVCGFPNDNPQR---VRRFAVGRTRFMIMLLTAHFTRIAVGDCR 249 (478)
Q Consensus 177 l~l~~~~~~~-G~V~ai~~~~g---~~Ll~avg~~l~v~~l~~~~~~~---L~~~a~~~~~~~i~sL~~~~n~IlvgD~~ 249 (478)
+.+-..+... +-|+.++.+.+ +.||.+..++|++|+..+ ... ++.......++.+ ++...|.+|++|-=-
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--~~lv~KfKG~~n~~SQ~~A-sfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--KDLVHKFKGFRNTSSQISA-SFSSDGKHIVSASED 567 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc--hhhhhhhcccccCCcceee-eEccCCCEEEEeecC
Confidence 2222233333 35888888864 535555678899999965 222 3333322333323 344478999998855
Q ss_pred CcEEEEEEe
Q 011732 250 DGILFYSYH 258 (478)
Q Consensus 250 ~Sv~ll~y~ 258 (478)
..|++++++
T Consensus 568 s~VYiW~~~ 576 (712)
T KOG0283|consen 568 SWVYIWKND 576 (712)
T ss_pred ceEEEEeCC
Confidence 566665554
No 40
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.27 E-value=2.1 Score=46.86 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=70.0
Q ss_pred CceEEEEeCC-eEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEeccCceEEEEecCCCC
Q 011732 197 DRYFLASAGN-AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQ 273 (478)
Q Consensus 197 g~~Ll~avg~-~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~ 273 (478)
++.++++.+. .+..++++..+.++|..+.....--+|..|.+ +||+|+|.+...-|+++. -+..+..++.-++.
T Consensus 441 ~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~n--l~~~~~~~l~~rln- 517 (691)
T KOG2048|consen 441 NKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYN--LETLESHLLKVRLN- 517 (691)
T ss_pred ceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEE--cccceeecchhccC-
Confidence 4523444222 26777776655566766554322234666654 599999999777777754 45666677776666
Q ss_pred ceeEEEEee--cCCeEEEeCCCCcEEEEecC
Q 011732 274 RLVADCVLM--DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 274 ~~vta~~~l--d~~~~l~aD~~gNl~vl~~~ 302 (478)
+.+|++.+- +.+.++++++++-++-|..+
T Consensus 518 ~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 518 IDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred cceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 889998875 55699999999999988873
No 41
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=94.16 E-value=7 Score=39.64 Aligned_cols=209 Identities=12% Similarity=0.102 Sum_probs=126.2
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEE----EECCCCCceEEEEEEEECCe-eEEEEeeecCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSS----FKLELGETGKSMELVRVGHE-QVLVVGTSLSSG 91 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~----~~l~~~E~~~s~~~~~l~~~-~~l~VGT~~~~g 91 (478)
...-++|+.+++.++-++.+. +|+++|-..|+.-.. ..++.+ +++- +.|..+ .-++|-+..
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr-------~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~---V~FapDc~s~vv~~~~--- 153 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDR-------SIRLWDVRDFENKEHRCIRQNVEYD-HPTR---VVFAPDCKSVVVSVKR--- 153 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCc-------eEEEEecchhhhhhhhHhhccccCC-CceE---EEECCCcceEEEEEcc---
Confidence 577899999999999887644 699999887763321 233333 5543 445433 556666662
Q ss_pred CCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccc
Q 011732 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (478)
.-.|++|.+.|.++ |+ +++ ..-|-|
T Consensus 154 ------------g~~l~vyk~~K~~d------------G~-----~~~----------------~~v~~D---------- 178 (420)
T KOG2096|consen 154 ------------GNKLCVYKLVKKTD------------GS-----GSH----------------HFVHID---------- 178 (420)
T ss_pred ------------CCEEEEEEeeeccc------------CC-----CCc----------------cccccc----------
Confidence 23689999987431 11 111 111110
Q ss_pred cccceEEEEEEEecCCceEEEeeeC-CceEEEE-eCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecC
Q 011732 172 TETWQLRLAYSTTWPGMVLAICPYL-DRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCR 249 (478)
Q Consensus 172 ~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~a-vg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~ 249 (478)
...+.- ...-++..+---+ ++||.-| .+.+|.+|++.. |.|..+..-...-+--.++..|-||+++-..
T Consensus 179 --~~~f~~----kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG---q~L~~idtnq~~n~~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 179 --NLEFER----KHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG---QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT 249 (420)
T ss_pred --ccccch----hcccceEEEeecCCceEEEEecCCCcEEEEecCC---ceeeeeccccccccceeeCCCCcEEEEecCC
Confidence 011211 1223333333222 4656555 488899999985 6676655444444556667789999999888
Q ss_pred CcEEEEEEe-ccCceEEEEecCCC----CceeEEEEeecC-CeEEEeCCCCcEEEEecCC
Q 011732 250 DGILFYSYH-EDARKLEQIYCDPS----QRLVADCVLMDV-DTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 250 ~Sv~ll~y~-~~~~~L~~varD~~----~~~vta~~~ld~-~~~l~aD~~gNl~vl~~~~ 303 (478)
--|.++.-- ..++.+.++.|=+. ..-|++..|-.+ ..++..-++|...++..+-
T Consensus 250 pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 250 PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 888886532 13456666655543 334666666543 3788889999999988654
No 42
>PTZ00420 coronin; Provisional
Probab=94.12 E-value=2.4 Score=46.82 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=51.1
Q ss_pred EEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCce-EEEEEEEECC-eeEEEEeeec
Q 011732 11 KFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETG-KSMELVRVGH-EQVLVVGTSL 88 (478)
Q Consensus 11 ~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~-~s~~~~~l~~-~~~l~VGT~~ 88 (478)
.+.....+..+.|+|+.+.+++.+.+ ..|+++|+.+++.+.++.-..+-.. .++....+.. ..+|+. |++
T Consensus 163 ~i~~~~~V~SlswspdG~lLat~s~D-------~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlT-tG~ 234 (568)
T PTZ00420 163 QINMPKKLSSLKWNIKGNLLSGTCVG-------KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILS-TGF 234 (568)
T ss_pred EEecCCcEEEEEECCCCCEEEEEecC-------CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEE-EEc
Confidence 45555678889999999988766532 4799999999998876654333211 1222222333 344443 333
Q ss_pred CCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 89 SSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 89 ~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
.. .+.+.|.+|++.
T Consensus 235 d~-----------~~~R~VkLWDlr 248 (568)
T PTZ00420 235 SK-----------NNMREMKLWDLK 248 (568)
T ss_pred CC-----------CCccEEEEEECC
Confidence 11 134579999987
No 43
>PTZ00421 coronin; Provisional
Probab=93.99 E-value=11 Score=40.92 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=53.4
Q ss_pred cCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEE--EeCCEEE-Eee---cCCcEEEEE
Q 011732 185 WPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIA-VGD---CRDGILFYS 256 (478)
Q Consensus 185 ~~G~V~ai~~~-~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~--~~~n~Il-vgD---~~~Sv~ll~ 256 (478)
..++|++|+-- .|.+|+.+. ..+|.+|+++.. +.+....... ......+. ..++.|+ +|. ..+.|.++.
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg--~~v~tl~~H~-~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG--TIVSSVEAHA-SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCC--cEEEEEecCC-CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 45778888754 356344333 467999999862 2222221111 11111111 1235554 342 134566654
Q ss_pred EeccCceEEEEecCCCCceeEEEEeecCC--e-EEEeCCCCcEEEEecCC
Q 011732 257 YHEDARKLEQIYCDPSQRLVADCVLMDVD--T-AVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 257 y~~~~~~L~~varD~~~~~vta~~~ld~~--~-~l~aD~~gNl~vl~~~~ 303 (478)
.+.....+....-|.. ....+.+.+.+ . ++++-.+|+|.++++..
T Consensus 244 lr~~~~p~~~~~~d~~--~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 244 TRKMASPYSTVDLDQS--SALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CCCCCCceeEeccCCC--CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 4332222332222222 12223334433 3 34444589999998864
No 44
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=93.92 E-value=2.2 Score=46.14 Aligned_cols=99 Identities=13% Similarity=0.247 Sum_probs=75.3
Q ss_pred EEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCc----eEEEEec-C----
Q 011732 200 FLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR----KLEQIYC-D---- 270 (478)
Q Consensus 200 Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~----~L~~var-D---- 270 (478)
+++|+|..||-+.+++ .+.|.+.+......-+++|.....+|.+|+.-..|-++ ++... .|..... +
T Consensus 149 y~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw--DpR~ksrv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 149 YLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW--DPRDKSRVGTLDAASSVNSHPG 224 (703)
T ss_pred EEeecCcceEEEEccc--cccccccccccccceeeeecCccceEEecccCceEEEe--cchhhhhheeeecccccCCCcc
Confidence 7899999999999987 68899988766777888999999999999998888885 44322 2222111 1
Q ss_pred -CCCceeEEEEeecCC-eEEEeCCCCcEEEEecC
Q 011732 271 -PSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 271 -~~~~~vta~~~ld~~-~~l~aD~~gNl~vl~~~ 302 (478)
.....||++.|-|++ .+-++-+.|.+++++.-
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 123448999997766 78888999999999864
No 45
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=93.73 E-value=1.6 Score=45.58 Aligned_cols=56 Identities=9% Similarity=0.007 Sum_probs=37.0
Q ss_pred cceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEec
Q 011732 41 TCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHM 115 (478)
Q Consensus 41 ~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~ 115 (478)
...+.|+++|-++... .-.|+..+.. +..+.|...-|.++-++. .|.+.+|++.|.
T Consensus 366 t~d~~vkiwdlks~~~--~a~Fpght~~--vk~i~FsENGY~Lat~ad---------------d~~V~lwDLRKl 421 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTN--VAKFPGHTGP--VKAISFSENGYWLATAAD---------------DGSVKLWDLRKL 421 (506)
T ss_pred CCCceEEEEEcCCccc--cccCCCCCCc--eeEEEeccCceEEEEEec---------------CCeEEEEEehhh
Confidence 3467899999887663 3466665544 466788765444444331 466999999864
No 46
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.46 E-value=1.6 Score=47.39 Aligned_cols=108 Identities=10% Similarity=0.173 Sum_probs=63.8
Q ss_pred cCCceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CCEEEEeecCCcEEEEEEecc-
Q 011732 185 WPGMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVGDCRDGILFYSYHED- 260 (478)
Q Consensus 185 ~~G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n~IlvgD~~~Sv~ll~y~~~- 260 (478)
-+|-|.++.-.. -.||++|.-..|.+|++-. +.|++ ...-....|.+|.++ |+-|++|..-+-+..+..+-.
T Consensus 565 skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k---qelvK-kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 565 SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK---QELVK-KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred cCCceeEEEecCCCceEEEEeccceEEEehhH---HHHHH-HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 356666655322 2349999999999999986 55554 222334456666665 689999998888877765433
Q ss_pred -CceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEe
Q 011732 261 -ARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 261 -~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~ 300 (478)
+.+.... +...++++.|- ....|..+-.+|.+.+|-
T Consensus 641 kPyk~lr~----H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 641 KPYKTLRL----HEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred chhHHhhh----hhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 2222111 22234444442 334555555566666664
No 47
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=93.18 E-value=2 Score=42.11 Aligned_cols=119 Identities=9% Similarity=0.033 Sum_probs=81.0
Q ss_pred EEEEEEecCCceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEE--EeCCEEEEeecCCcEEE
Q 011732 178 RLAYSTTWPGMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILF 254 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~--~~~n~IlvgD~~~Sv~l 254 (478)
+.+++.+++.+|+++.-.+ |+||.+|-|+.|..|+... +..+..+++|.-|.+-+ ..+++.++|--+- ++
T Consensus 176 t~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks-----f~~lKs~k~P~nV~SASL~P~k~~fVaGged~--~~ 248 (334)
T KOG0278|consen 176 TEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS-----FGLLKSYKMPCNVESASLHPKKEFFVAGGEDF--KV 248 (334)
T ss_pred cEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccc-----ccceeeccCccccccccccCCCceEEecCcce--EE
Confidence 4567888999999998665 6878888999999998875 55566778888766554 4578888886553 44
Q ss_pred EEEeccCc-eEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCCC
Q 011732 255 YSYHEDAR-KLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDR 304 (478)
Q Consensus 255 l~y~~~~~-~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~~ 304 (478)
++|+-..+ .+.. .---.+-.|-|+.|- |...+..+-.+|.|.+.+..+.
T Consensus 249 ~kfDy~TgeEi~~-~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 249 YKFDYNTGEEIGS-YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEEeccCCceeee-cccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 44543332 2222 112223335555553 5558888889999999998764
No 48
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=93.13 E-value=2.6 Score=39.65 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=55.5
Q ss_pred CCeeeEEEeCCC--CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEE
Q 011732 5 KRLNVRKFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVL 82 (478)
Q Consensus 5 ~~l~ir~i~L~~--tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l 82 (478)
+.-++..++|.. ..+.++++|+++.|+|+.... ...+.|+|.+ ++.+..+ +.. ...++ .|.. +..++
T Consensus 47 ~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~-----~~~v~lyd~~-~~~i~~~--~~~-~~n~i-~wsP-~G~~l 115 (194)
T PF08662_consen 47 KNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM-----PAKVTLYDVK-GKKIFSF--GTQ-PRNTI-SWSP-DGRFL 115 (194)
T ss_pred CCCccceeeccCCCceEEEEECcCCCEEEEEEccC-----CcccEEEcCc-ccEeEee--cCC-CceEE-EECC-CCCEE
Confidence 445677888865 589999999999999886422 2489999996 5555443 322 22222 2332 34677
Q ss_pred EEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 83 ~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
++|..-+ ..|.|.+|++.
T Consensus 116 ~~~g~~n-------------~~G~l~~wd~~ 133 (194)
T PF08662_consen 116 VLAGFGN-------------LNGDLEFWDVR 133 (194)
T ss_pred EEEEccC-------------CCcEEEEEECC
Confidence 7765322 35899999987
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.06 E-value=18 Score=40.57 Aligned_cols=123 Identities=14% Similarity=0.153 Sum_probs=86.3
Q ss_pred EEEEEecCCceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceeee---ecccce-eEEEEEEeC--CEEEEeecCCc
Q 011732 179 LAYSTTWPGMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFA---VGRTRF-MIMLLTAHF--TRIAVGDCRDG 251 (478)
Q Consensus 179 l~~~~~~~G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~a---~~~~~~-~i~sL~~~~--n~IlvgD~~~S 251 (478)
.+|...++.+|.||+--+ |+++++|+|+-+.+|.....-+..+.+.. .+-.++ -|++|+-.. +++++|----+
T Consensus 89 Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s 168 (893)
T KOG0291|consen 89 VLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLS 168 (893)
T ss_pred eeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccce
Confidence 678889999999999665 56688999999999987653221122222 222233 588887553 56777777778
Q ss_pred EEEEEEeccCceEEEEecCCCCceeEEEEeecC-CeEEEeCCCCcEEEEecC
Q 011732 252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 252 v~ll~y~~~~~~L~~varD~~~~~vta~~~ld~-~~~l~aD~~gNl~vl~~~ 302 (478)
+.++..+...+ |...+-.-+.-.|.+|.|--+ ..+..--++|-++++.++
T Consensus 169 ~rl~~v~~~k~-~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 169 ARLFGVDGNKN-LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred EEEEEeccccc-cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEec
Confidence 88887765555 555555666778888888544 367777889999999887
No 50
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.00 E-value=5.5 Score=37.63 Aligned_cols=99 Identities=10% Similarity=-0.018 Sum_probs=55.0
Q ss_pred CCceEEEEe-CCeEEEEeeCCCCcccceeeeecccce----------eEEEEEEeCCEEEEeecCCcEEEEEEeccCceE
Q 011732 196 LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRF----------MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKL 264 (478)
Q Consensus 196 ~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~----------~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L 264 (478)
++. ++++. +..|+.++.+. .+.+-.... ..+. ....+...++.|++++.-.. ++.++...++.
T Consensus 122 ~~~-~~~~~~~g~l~~~d~~t--G~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~--~~~~d~~tg~~ 195 (238)
T PF13360_consen 122 GDR-LYVGTSSGKLVALDPKT--GKLLWKYPV-GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR--VVAVDLATGEK 195 (238)
T ss_dssp TTE-EEEEETCSEEEEEETTT--TEEEEEEES-STT-SS--EEEETTEEEEEECCTTEEEEECCTSS--EEEEETTTTEE
T ss_pred cCE-EEEEeccCcEEEEecCC--CcEEEEeec-CCCCCCcceeeecccccceEEECCEEEEEcCCCe--EEEEECCCCCE
Confidence 344 66666 77788888764 222222111 2111 12333444678888877665 34446666654
Q ss_pred EEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 265 EQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 265 ~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
. -.++ ..........+++.+++.+++++|+.++...
T Consensus 196 ~-w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 196 L-WSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp E-EEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred E-EEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 3 3333 2223333345667777777999999998653
No 51
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.86 E-value=4.3 Score=42.72 Aligned_cols=135 Identities=12% Similarity=0.087 Sum_probs=77.7
Q ss_pred ecCCceEEEeeeCCceEEEEeC---CeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCEEEEeecCCcEEEEEEec
Q 011732 184 TWPGMVLAICPYLDRYFLASAG---NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHE 259 (478)
Q Consensus 184 ~~~G~V~ai~~~~g~~Ll~avg---~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~IlvgD~~~Sv~ll~y~~ 259 (478)
...+.|.+|..+.-. =++++| .++++|.+.++ +| |...+- ...+-++... .+-.+.|-.--+|.|+....
T Consensus 284 GHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ee-sq-lifrg~---~~sidcv~~In~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEE-SQ-LIFRGG---EGSIDCVAFINDEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred CCccceeeechhccc-ceEEeccccceeEEEecccc-ce-eeeeCC---CCCeeeEEEecccceeeccCCceEEEeeecc
Confidence 456778888777533 356666 55999999654 44 332221 1123333322 34445555555666655432
Q ss_pred cC-ceEEEEec------CC--CCceeEEEEeecCCeEEE-eCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccE
Q 011732 260 DA-RKLEQIYC------DP--SQRLVADCVLMDVDTAVV-SDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVS 329 (478)
Q Consensus 260 ~~-~~L~~var------D~--~~~~vta~~~ld~~~~l~-aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~ 329 (478)
.. -....+|- |+ .+.|++++..+-+..+++ +--+|++.+....++. ..|+....+-+-..||+
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~-------r~i~~l~~ls~~GfVNs 430 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL-------RAINLLYSLSLVGFVNS 430 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc-------cccceeeecccccEEEE
Confidence 11 11111121 22 235999999887665444 4559999988876421 35777777777888888
Q ss_pred EE
Q 011732 330 IR 331 (478)
Q Consensus 330 ~~ 331 (478)
+.
T Consensus 431 l~ 432 (479)
T KOG0299|consen 431 LA 432 (479)
T ss_pred EE
Confidence 86
No 52
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=92.84 E-value=11 Score=41.35 Aligned_cols=118 Identities=10% Similarity=0.082 Sum_probs=68.2
Q ss_pred EEEEEEe-cCCceEEEeeeCC-ceEEEEe-CCeEEEEeeCCCCcccceeeeeccc-ceeEEEEEEeCCEEEEeecCCcEE
Q 011732 178 RLAYSTT-WPGMVLAICPYLD-RYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRT-RFMIMLLTAHFTRIAVGDCRDGIL 253 (478)
Q Consensus 178 ~l~~~~~-~~G~V~ai~~~~g-~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~-~~~i~sL~~~~n~IlvgD~~~Sv~ 253 (478)
+.+++.. ..+.|+++. +.+ .+++-+. -..|.+|++.. .+ +-...+.. ...+..|...+++++-+-+-..|.
T Consensus 362 ~cl~sl~gH~~~V~sl~-~~~~~~~~Sgs~D~~IkvWdl~~--~~--~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 362 KCLKSLSGHTGRVYSLI-VDSENRLLSGSLDTTIKVWDLRT--KR--KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIK 436 (537)
T ss_pred eeeeeecCCcceEEEEE-ecCcceEEeeeeccceEeecCCc--hh--hhhhhhcCCcccccccccccceeEeccccccEE
Confidence 4444333 678999984 444 4355543 56699999986 21 11122233 334555666666665554444465
Q ss_pred EEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 254 FYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 254 ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+ |+..++.......-+..-.+++..+. .+.++++=.+|.+.++.++.
T Consensus 437 ~--WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 437 L--WDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred E--eecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence 5 45555555554444333444555443 45888888899999887754
No 53
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.71 E-value=1.7 Score=45.71 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=83.4
Q ss_pred EecCCceEEEeeeCC--ceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CCEEEEeecCCcEEEEEEe
Q 011732 183 TTWPGMVLAICPYLD--RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 183 ~~~~G~V~ai~~~~g--~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n~IlvgD~~~Sv~ll~y~ 258 (478)
+..+|+|.+++-..| ....++...++.+|.+++ ..... .+|..+.-|.+|++. .--+-||-.-+++-+++.
T Consensus 241 ~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~---~s~ve-tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi- 315 (479)
T KOG0299|consen 241 KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ---LSYVE-TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI- 315 (479)
T ss_pred cccccceeeeeeecCccceeeeecCCceEEEehhH---hHHHH-HHhCCccceeeechhcccceEEeccccceeEEEec-
Confidence 457899999997765 424555677799999986 22232 456778889999875 345568888899999887
Q ss_pred ccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 259 EDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 259 ~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
+++-+|+..+- .-.+-|+.||+++.|+.+-.+|+|......
T Consensus 316 ~eesqlifrg~---~~sidcv~~In~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 316 PEESQLIFRGG---EGSIDCVAFINDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred cccceeeeeCC---CCCeeeEEEecccceeeccCCceEEEeeec
Confidence 67777877654 335667889999999999999999887753
No 54
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=92.57 E-value=7.1 Score=39.98 Aligned_cols=137 Identities=15% Similarity=0.263 Sum_probs=76.2
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEe--CCC--CcEEEEE-ECCCC-CceEEEEEEEEC-Cee
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVD--PLS--GSVLSSF-KLELG-ETGKSMELVRVG-HEQ 80 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d--~~t--~~~i~~~-~l~~~-E~~~s~~~~~l~-~~~ 80 (478)
..-.++=|.=||+|+|||..+...+++. . .++|-++. +.. ++.+..+ .|+++ .--...+-+.+. +-+
T Consensus 183 ~~~~v~~G~GPRHi~FHpn~k~aY~v~E-L-----~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 183 DPAEVKPGAGPRHIVFHPNGKYAYLVNE-L-----NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred cccccCCCCCcceEEEcCCCcEEEEEec-c-----CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC
Confidence 3344566778999999999996666642 2 24444443 322 3334332 22221 111122223333 447
Q ss_pred EEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCC
Q 011732 81 VLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPD 160 (478)
Q Consensus 81 ~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (478)
||.+.-.. .-.|-+|.+.. +
T Consensus 257 FLYasNRg---------------~dsI~~f~V~~---------------------------------------------~ 276 (346)
T COG2706 257 FLYASNRG---------------HDSIAVFSVDP---------------------------------------------D 276 (346)
T ss_pred EEEEecCC---------------CCeEEEEEEcC---------------------------------------------C
Confidence 87766332 11788899872 2
Q ss_pred CCCcCCccccccccceEEEEEEEecCCc-eEE--EeeeCCceEEEEe--CCeEEEEeeCCCCcccceeee
Q 011732 161 DASCDGIKLEETETWQLRLAYSTTWPGM-VLA--ICPYLDRYFLASA--GNAFYVCGFPNDNPQRVRRFA 225 (478)
Q Consensus 161 ~~~~~g~~~~~~~~~~l~l~~~~~~~G~-V~a--i~~~~g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a 225 (478)
+.+|.++...+..|- +.. +..- |++|++|- +..|.+|+.++... .|....
T Consensus 277 -------------~g~L~~~~~~~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG-~L~~~~ 331 (346)
T COG2706 277 -------------GGKLELVGITPTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETG-RLTLLG 331 (346)
T ss_pred -------------CCEEEEEEEeccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCc-eEEecc
Confidence 137888888888876 433 3322 56344443 33399999987543 366544
No 55
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.50 E-value=21 Score=41.65 Aligned_cols=227 Identities=16% Similarity=0.174 Sum_probs=144.4
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECC--CCCceEEEEEEEECCeeEEEEeeecCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE--LGETGKSMELVRVGHEQVLVVGTSLSSGPAI 94 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~--~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~ 94 (478)
.|+.+.+||=..+++++-. +..|+++|-...+.+..|... +.-.++.++.+.=.+...+++|+.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~-------r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~------- 1131 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADD-------RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASS------- 1131 (1387)
T ss_pred CCceeeecCCCceeEEcCC-------cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeecc-------
Confidence 5899999999999988832 457999998888888777554 567888888876667789998866
Q ss_pred CCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccccc
Q 011732 95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET 174 (478)
Q Consensus 95 ~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 174 (478)
-|-|.+|+=-. + +-
T Consensus 1132 ---------dGvIRIwk~y~---------------------------------------------~-----~~------- 1145 (1387)
T KOG1517|consen 1132 ---------DGVIRIWKDYA---------------------------------------------D-----KW------- 1145 (1387)
T ss_pred ---------CceEEEecccc---------------------------------------------c-----cc-------
Confidence 35555554321 0 00
Q ss_pred ceEEEEEE----------EecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCCcccceeeeecccceeEEEEEE---eC
Q 011732 175 WQLRLAYS----------TTWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA---HF 240 (478)
Q Consensus 175 ~~l~l~~~----------~~~~G~V~ai~~~~g~~Ll~avg~~-l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~---~~ 240 (478)
.+.+++.. ..-.|.|+.=.+..|+ |+++-+.+ |++|+...+ +...-+ -+.....+++|+. .+
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E--~~~~di-P~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKE--QVVADI-PYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccc--eeEeec-ccCCCccceeecccccCC
Confidence 01222221 1112466666677787 76665444 688888763 212211 1235557888875 37
Q ss_pred CEEEEeecCCcEEEEEEec-cCceEEEEecCCCCce-eEEEEeec--CCeEEEeCCCCcEEEEecCCCcccCCCCCccce
Q 011732 241 TRIAVGDCRDGILFYSYHE-DARKLEQIYCDPSQRL-VADCVLMD--VDTAVVSDRKGSIAVLSCSDRLEDNASPECNLT 316 (478)
Q Consensus 241 n~IlvgD~~~Sv~ll~y~~-~~~~L~~varD~~~~~-vta~~~ld--~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~ 316 (478)
|.|++|=.--||-+|.-+- ....++.+-|-..... +..+.+-- .+.++.+-.+|.|.+++.--.. .. .-+.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~----~e-~~~~ 1296 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS----KE-TFLT 1296 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc----cc-ccce
Confidence 9999999999999986543 2346666666554432 55555432 2368888999999999864311 11 1455
Q ss_pred eeeeeecCccccEEEe
Q 011732 317 PNCAYHMGEIAVSIRK 332 (478)
Q Consensus 317 ~~~~fhlGd~vt~~~~ 332 (478)
-..++..|.-.|+|..
T Consensus 1297 iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTV 1312 (1387)
T ss_pred eeeccccCccceeeee
Confidence 6666667876677643
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.45 E-value=2.5 Score=44.63 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=83.8
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeec
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSL 88 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~ 88 (478)
+..+.-|.-...++|.|....++-+. .+.++++|-.++..+-.-.+.-+-+++|+.... +...|+-|
T Consensus 190 v~elnhg~pVe~vl~lpsgs~iasAg--------Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s--~~~rLlS~--- 256 (487)
T KOG0310|consen 190 VVELNHGCPVESVLALPSGSLIASAG--------GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS--DSTRLLSG--- 256 (487)
T ss_pred eEEecCCCceeeEEEcCCCCEEEEcC--------CCeEEEEEecCCceehhhhhcccceEEEEEeec--CCceEeec---
Confidence 45566667788899998777776653 468999999877655444555677899988764 22334333
Q ss_pred CCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcc
Q 011732 89 SSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIK 168 (478)
Q Consensus 89 ~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 168 (478)
.--|++.+|++.
T Consensus 257 -------------sLD~~VKVfd~t------------------------------------------------------- 268 (487)
T KOG0310|consen 257 -------------SLDRHVKVFDTT------------------------------------------------------- 268 (487)
T ss_pred -------------ccccceEEEEcc-------------------------------------------------------
Confidence 125789999965
Q ss_pred ccccccceEEEEEEEecCCceEEEeeeCC-ceEEEEeCCeEEEEe
Q 011732 169 LEETETWQLRLAYSTTWPGMVLAICPYLD-RYFLASAGNAFYVCG 212 (478)
Q Consensus 169 ~~~~~~~~l~l~~~~~~~G~V~ai~~~~g-~~Ll~avg~~l~v~~ 212 (478)
.++++|.-..+|||.+|.-..| ..+++|.++-+..+.
T Consensus 269 -------~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 269 -------NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred -------ceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 4678999999999999998874 558888887765555
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.32 E-value=10 Score=35.79 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCcEEEEEECCC
Q 011732 44 SDICCVDPLSGSVLSSFKLEL 64 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~ 64 (478)
+.|..+|+.|++.+.++.+.+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~ 23 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP 23 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS
T ss_pred CEEEEEECCCCCEEEEEECCC
Confidence 578999999999999999965
No 58
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.24 E-value=16 Score=37.76 Aligned_cols=145 Identities=13% Similarity=0.141 Sum_probs=86.8
Q ss_pred ceEEEEEEE--------ecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeec-c--cceeEEEEEEeCCEE
Q 011732 175 WQLRLAYST--------TWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVG-R--TRFMIMLLTAHFTRI 243 (478)
Q Consensus 175 ~~l~l~~~~--------~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~-~--~~~~i~sL~~~~n~I 243 (478)
++|+++|-+ ..+-+|.+|.--+.+ |+++.-..+|+|++.. =+.|..+..+ . ....+.++..-+.++
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~R-LvV~Lee~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILAVRMNRKR-LVVCLEESIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNNANCYL 144 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEEEEEccce-EEEEEcccEEEEeccc--ceeehhhhccCCCccceEeeccCCCCceE
Confidence 478887744 467889999877788 9999988899999986 2334333322 1 124555555556788
Q ss_pred EEeecCCcEEEEEEeccCc-eEEEEecCCCCceeEEEEeecCCeEEEe--CCCCcEEEEecCCCcccCCCCCccceeeee
Q 011732 244 AVGDCRDGILFYSYHEDAR-KLEQIYCDPSQRLVADCVLMDVDTAVVS--DRKGSIAVLSCSDRLEDNASPECNLTPNCA 320 (478)
Q Consensus 244 lvgD~~~Sv~ll~y~~~~~-~L~~varD~~~~~vta~~~ld~~~~l~a--D~~gNl~vl~~~~~~~~s~~~~~~L~~~~~ 320 (478)
..=+-..+=.++-|+..+- ....+. .+.-.+.++.|=.++++|++ |+---|++|..+. ++ ..-+
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------G~----kl~e 211 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------GQ----KLYE 211 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-------cc----Eeee
Confidence 7777766555555664331 112222 23334555555445555543 5555677887753 21 4456
Q ss_pred eecCccccEEEeeee
Q 011732 321 YHMGEIAVSIRKGSF 335 (478)
Q Consensus 321 fhlGd~vt~~~~gsl 335 (478)
|+-|-...++..-+|
T Consensus 212 FRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSF 226 (391)
T ss_pred eeCCceeeEEEEEEE
Confidence 666776666665444
No 59
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.05 E-value=1.1 Score=46.98 Aligned_cols=108 Identities=10% Similarity=0.105 Sum_probs=73.9
Q ss_pred EEeeeCCceEEEEeCCe--EEEEeeCCCCcccceeeeecccceeEEEEE--EeCCEEEEeecCCcEEEEEEeccCceEEE
Q 011732 191 AICPYLDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYHEDARKLEQ 266 (478)
Q Consensus 191 ai~~~~g~~Ll~avg~~--l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~--~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~ 266 (478)
++..+++.||++|.-.+ |++|+|.+. ..+. ..+..|=.+..|. -.|.+++.|++...++++... .+.|.-
T Consensus 44 sl~~l~~~yllsaq~~rp~l~vw~i~k~--~~~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--sG~LL~ 117 (476)
T KOG0646|consen 44 SLTALNNEYLLSAQLKRPLLHVWEILKK--DQVV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS--SGILLN 117 (476)
T ss_pred hhhhhchhheeeecccCccccccccCch--hhhh--hhcccccceeeeecCCCceEEEeecccCcEEEEEec--cccHHH
Confidence 34445566788887444 899999862 2122 2223444455554 468999999999999997764 344443
Q ss_pred EecCCCCceeEEEEeecCC-eEEEeCCCCcEEEEecCCCc
Q 011732 267 IYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSDRL 305 (478)
Q Consensus 267 varD~~~~~vta~~~ld~~-~~l~aD~~gNl~vl~~~~~~ 305 (478)
+- +.+-..+|+..|.+++ .++.+-++|-++++..-...
T Consensus 118 v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 118 VL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred HH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 32 6677789999998776 78888899999999875533
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=14 Score=39.90 Aligned_cols=231 Identities=14% Similarity=0.111 Sum_probs=125.0
Q ss_pred CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCC
Q 011732 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAI 94 (478)
Q Consensus 15 ~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~ 94 (478)
.+.+.-+.|.++.+.++|++. .+.|+|+|..+.+.+..+...-..++-|++ | +...+..|..
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~-------~g~v~iwD~~~~k~~~~~~~~h~~rvg~la-W---~~~~lssGsr------- 278 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTS-------DGTVQIWDVKEQKKTRTLRGSHASRVGSLA-W---NSSVLSSGSR------- 278 (484)
T ss_pred CCceEEEEECCCCCEEEEeec-------CCeEEEEehhhccccccccCCcCceeEEEe-c---cCceEEEecC-------
Confidence 568999999999999999975 468999998877666555543344444432 2 2334444432
Q ss_pred CCCCCCcCcceEEEEEEEEecccCCCC-----CccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccc
Q 011732 95 MPSGEAESTKGRLIVLCIEHMQNSDCG-----SMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKL 169 (478)
Q Consensus 95 ~~~~e~~~~~Gri~v~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 169 (478)
.|.|+.+++...+ +... .-..|+=+-++.- ..-..-+|++...-- ++.
T Consensus 279 ---------~~~I~~~dvR~~~-~~~~~~~~H~qeVCgLkws~d~---------~~lASGgnDN~~~Iw------d~~-- 331 (484)
T KOG0305|consen 279 ---------DGKILNHDVRISQ-HVVSTLQGHRQEVCGLKWSPDG---------NQLASGGNDNVVFIW------DGL-- 331 (484)
T ss_pred ---------CCcEEEEEEecch-hhhhhhhcccceeeeeEECCCC---------CeeccCCCccceEec------cCC--
Confidence 3455555554211 0000 0012222111000 000000000000000 010
Q ss_pred cccccceEEEEEEEecCCceEEEe--eeCCceEEEEeCCe---EEEEeeCCCCcccceeeeecccceeEEEEEEeCCE--
Q 011732 170 EETETWQLRLAYSTTWPGMVLAIC--PYLDRYFLASAGNA---FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTR-- 242 (478)
Q Consensus 170 ~~~~~~~l~l~~~~~~~G~V~ai~--~~~g~~Ll~avg~~---l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~-- 242 (478)
..-.+++-.++.++|.|+. +++...|+.|-|.. |+.|+-.. -..+...++...|.+|.-.+..
T Consensus 332 -----~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-----g~~i~~vdtgsQVcsL~Wsk~~kE 401 (484)
T KOG0305|consen 332 -----SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-----GARIDSVDTGSQVCSLIWSKKYKE 401 (484)
T ss_pred -----CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-----CcEecccccCCceeeEEEcCCCCE
Confidence 0112334467889998876 55666255555555 45554442 2233456788899999876543
Q ss_pred EE--EeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 243 IA--VGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 243 Il--vgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
|+ .|....-|.+++|-. -+.+..+...... |.....= |...++.+..+.||.++..-+
T Consensus 402 i~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~R--Vl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 402 LLSTHGYSENQITLWKYPS-MKLVAELLGHTSR--VLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEEecCCCCCcEEEEeccc-cceeeeecCCcce--eEEEEECCCCCEEEEecccCcEEeccccC
Confidence 43 567778899999854 3334443333332 5555442 456899999999999998654
No 61
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.70 E-value=7.3 Score=42.83 Aligned_cols=114 Identities=9% Similarity=0.092 Sum_probs=69.8
Q ss_pred CCceEEEeeeCCceEEEEeC--CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCce
Q 011732 186 PGMVLAICPYLDRYFLASAG--NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK 263 (478)
Q Consensus 186 ~G~V~ai~~~~g~~Ll~avg--~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~ 263 (478)
+.+||+++.-+.++++++-| +.|.+|+... .+++.+..-+..+..+.-+.-.|.+++-|-.---|-+.....+.-.
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt--~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT--CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEecccc--ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence 34688888776655666654 3489998875 2334443333445555555666888888777667777665443333
Q ss_pred EEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 264 LEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 264 L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
.+.++-+ ...|...+. -+-..+..+|++|||+.-....
T Consensus 249 ~T~~vH~-e~VWaL~~~-~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 249 ATYIVHK-EGVWALQSS-PSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eeEEecc-CceEEEeeC-CCcceEEecCCCCcEEecccCC
Confidence 3333222 236666555 2335888999999998776543
No 62
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=91.69 E-value=28 Score=39.53 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=72.5
Q ss_pred cCCceEEEeeeCCce-EEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCc-EEEEEEec
Q 011732 185 WPGMVLAICPYLDRY-FLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDG-ILFYSYHE 259 (478)
Q Consensus 185 ~~G~V~ai~~~~g~~-Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~S-v~ll~y~~ 259 (478)
....|+++.+-.--= +++|. +.+|++|.++.| +.|+....- .-.|++++- .|+.+++.---.+ +.+ |+-
T Consensus 201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk~d--~g~VtslSFrtDG~p~las~~~~G~m~~--wDL 274 (910)
T KOG1539|consen 201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFKQD--WGRVTSLSFRTDGNPLLASGRSNGDMAF--WDL 274 (910)
T ss_pred cccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEEcc--ccceeEEEeccCCCeeEEeccCCceEEE--EEc
Confidence 457788887665320 33333 566999999975 336543321 245666665 4888876554444 555 677
Q ss_pred cCceEEEEecCCCCceeEEEEeecCCeEEEe---CCCCcEEEEec
Q 011732 260 DARKLEQIYCDPSQRLVADCVLMDVDTAVVS---DRKGSIAVLSC 301 (478)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~ld~~~~l~a---D~~gNl~vl~~ 301 (478)
+..++.-+-++.+.-.++...|+....++++ |..--+++++.
T Consensus 275 e~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 275 EKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred CCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 7889999999988888888888877755543 65555666653
No 63
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=91.65 E-value=11 Score=37.61 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=51.6
Q ss_pred EEEEecCCceEEEeeeCCce-EEEEeCCeEEEEeeCCCCc-ccceeee----ecccceeEEEEEEe--CCEEEEeecCCc
Q 011732 180 AYSTTWPGMVLAICPYLDRY-FLASAGNAFYVCGFPNDNP-QRVRRFA----VGRTRFMIMLLTAH--FTRIAVGDCRDG 251 (478)
Q Consensus 180 ~~~~~~~G~V~ai~~~~g~~-Ll~avg~~l~v~~l~~~~~-~~L~~~a----~~~~~~~i~sL~~~--~n~IlvgD~~~S 251 (478)
++..+...+|.+++--.++| |.+|++..|.+|+++.... ..|+... .-......+++.-. |..++.|+--..
T Consensus 227 lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 227 LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 67778889999999888887 6667899999999986210 0133211 11113345555544 788888888777
Q ss_pred EEEEEE
Q 011732 252 ILFYSY 257 (478)
Q Consensus 252 v~ll~y 257 (478)
+-+++.
T Consensus 307 irv~qv 312 (315)
T KOG0279|consen 307 IRVWQV 312 (315)
T ss_pred EEEEEe
Confidence 766543
No 64
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=91.62 E-value=3.3 Score=46.96 Aligned_cols=118 Identities=12% Similarity=0.101 Sum_probs=75.1
Q ss_pred eCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEE--ECCCCCce----EEEEEEEECCeeEEEEee
Q 011732 13 HLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF--KLELGETG----KSMELVRVGHEQVLVVGT 86 (478)
Q Consensus 13 ~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~--~l~~~E~~----~s~~~~~l~~~~~l~VGT 86 (478)
++.+....|.|+|..+.++|+.+ -+.|+++|-.++.+..+. -.+.+|.. .+-..|.-++..++++++
T Consensus 136 gh~apVl~l~~~p~~~fLAvss~-------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 136 GHDAPVLQLSYDPKGNFLAVSSC-------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred ccCCceeeeeEcCCCCEEEEEec-------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc
Confidence 45567889999999999999875 357899998877655432 12233333 233344444556666553
Q ss_pred ecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCC
Q 011732 87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG 166 (478)
Q Consensus 87 ~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 166 (478)
.+.+.+|+..
T Consensus 209 -----------------d~~Vkvy~r~----------------------------------------------------- 218 (933)
T KOG1274|consen 209 -----------------DNTVKVYSRK----------------------------------------------------- 218 (933)
T ss_pred -----------------CCeEEEEccC-----------------------------------------------------
Confidence 4456666654
Q ss_pred ccccccccceEEEEEEEecCCceEEEeeeC--CceEEEEe-CCeEEEEeeC
Q 011732 167 IKLEETETWQLRLAYSTTWPGMVLAICPYL--DRYFLASA-GNAFYVCGFP 214 (478)
Q Consensus 167 ~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~--g~~Ll~av-g~~l~v~~l~ 214 (478)
+|.+......+....+++++++. |+||+++. ++.|.||+++
T Consensus 219 -------~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 219 -------GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred -------CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 14444444445444546666663 89887774 7889999998
No 65
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=3.2 Score=42.91 Aligned_cols=133 Identities=8% Similarity=0.035 Sum_probs=78.6
Q ss_pred ecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCC--cccceeeeecccceeEEEEE-EeCCEEEEeecCCcEEEEEEec
Q 011732 184 TWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDN--PQRVRRFAVGRTRFMIMLLT-AHFTRIAVGDCRDGILFYSYHE 259 (478)
Q Consensus 184 ~~~G~V~ai~~~~g~~Ll~avg~~-l~v~~l~~~~--~~~L~~~a~~~~~~~i~sL~-~~~n~IlvgD~~~Sv~ll~y~~ 259 (478)
--.++|-.++..+|. |+.|+++. +.+|..+..+ +..|...+.. .+.+.+.-. ...++++.|-.-+=.-+=.|+-
T Consensus 103 l~~~~I~gl~~~dg~-Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 103 LGTKSIKGLKLADGT-LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred cccccccchhhcCCE-EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeec
Confidence 346788888888888 88888544 8888887321 1225544443 233333332 2345555565553111122443
Q ss_pred cCceEEEEecC--------CCCceeEEEEeecC--C-eEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCcccc
Q 011732 260 DARKLEQIYCD--------PSQRLVADCVLMDV--D-TAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAV 328 (478)
Q Consensus 260 ~~~~L~~varD--------~~~~~vta~~~ld~--~-~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt 328 (478)
++.+=+--|+. ..|.|.+++.|++. . .++.+-+.+-+.+|+-.. .=.++++|-.++.+.
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~----------qRRPV~~fd~~E~~i 250 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH----------QRRPVAQFDFLENPI 250 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcc----------cCcceeEeccccCcc
Confidence 33333334554 45899999999977 3 788889999999887432 122566666666543
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.15 E-value=2.5 Score=43.89 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=54.3
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeee
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS 87 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~ 87 (478)
.+++|+++-...+.-+++..-+..+ ++. ..+.++|-.|+++...|.-+.+-...-..-+.|. +..|++.|.+
T Consensus 335 ~~sv~~gg~vtSl~ls~~g~~lLss-sRD------dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 335 TRSVPLGGRVTSLDLSMDGLELLSS-SRD------DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred eeEeecCcceeeEeeccCCeEEeee-cCC------CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 4567777766666555544433333 322 3789999999999888865544433333344443 6799999955
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
-|++|+|++.
T Consensus 408 ----------------dgsv~iW~v~ 417 (459)
T KOG0288|consen 408 ----------------DGSVYIWSVF 417 (459)
T ss_pred ----------------CCcEEEEEcc
Confidence 6899999997
No 67
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.06 E-value=36 Score=39.56 Aligned_cols=165 Identities=14% Similarity=0.160 Sum_probs=107.6
Q ss_pred ceEEEEEEEecC--CceEEEeeeC-----CceEEEEe-----------CCeEEEEeeCCCCcccceeeeecccceeEEEE
Q 011732 175 WQLRLAYSTTWP--GMVLAICPYL-----DRYFLASA-----------GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLL 236 (478)
Q Consensus 175 ~~l~l~~~~~~~--G~V~ai~~~~-----g~~Ll~av-----------g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL 236 (478)
..++.++.+++. -.+++|++.+ +.|+++|. ..+|++|++.+. +.|+.++.....-.+.+|
T Consensus 758 nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~--~~L~~v~e~~v~Gav~aL 835 (1096)
T KOG1897|consen 758 NTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL--NSLELVAETVVKGAVYAL 835 (1096)
T ss_pred CceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC--Cceeeeeeeeeccceeeh
Confidence 356666655543 5677777443 56778874 346789999873 337777777777778888
Q ss_pred EEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCCCcccCCCCCccce
Q 011732 237 TAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLT 316 (478)
Q Consensus 237 ~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~ 316 (478)
...++++++| +=.+|.+++|-.+ +.|..-++-..+.-+..... ..+.++++|--+.+.+|+|... +..+.
T Consensus 836 ~~fngkllA~-In~~vrLye~t~~-~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~-------eg~f~ 905 (1096)
T KOG1897|consen 836 VEFNGKLLAG-INQSVRLYEWTTE-RELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGD-------EGNFE 905 (1096)
T ss_pred hhhCCeEEEe-cCcEEEEEEcccc-ceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEecc-------CCceE
Confidence 8888988665 7789999999643 44554444444443333332 4558999999999999999652 12477
Q ss_pred eeeeeecCccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEE
Q 011732 317 PNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFI 372 (478)
Q Consensus 317 ~~~~fhlGd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~ 372 (478)
.+|....+.-.++.-.- .....+.++..|-+..+.
T Consensus 906 evArD~~p~Wmtaveil---------------------~~d~ylgae~~gNlf~v~ 940 (1096)
T KOG1897|consen 906 EVARDYNPNWMTAVEIL---------------------DDDTYLGAENSGNLFTVR 940 (1096)
T ss_pred EeehhhCccceeeEEEe---------------------cCceEEeecccccEEEEE
Confidence 77766655554444321 224566677777776654
No 68
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.22 E-value=24 Score=36.15 Aligned_cols=234 Identities=14% Similarity=0.110 Sum_probs=127.7
Q ss_pred eeEEEe-CCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCC-CcEE---EEEEC---------CCCCceEEEEE
Q 011732 8 NVRKFH-LGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS-GSVL---SSFKL---------ELGETGKSMEL 73 (478)
Q Consensus 8 ~ir~i~-L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t-~~~i---~~~~l---------~~~E~~~s~~~ 73 (478)
.+.+++ .|..|..|+++|+.+.++|+.- ..+++.+++-.. +.+- ..+.+ +...++-++..
T Consensus 78 ~~~~~~~~g~~p~~i~~~~~g~~l~vany------~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 78 LLNSVPSGGSSPCHIAVDPDGRFLYVANY------GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEEEEEESSSCEEEEEECTTSSEEEEEET------TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred EeeeeccCCCCcEEEEEecCCCEEEEEEc------cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE
Confidence 455666 7779999999999999988742 134555655433 3322 22222 23455555322
Q ss_pred EEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccC
Q 011732 74 VRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSS 153 (478)
Q Consensus 74 ~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (478)
-.+..++.|--- | ..+|++|++...
T Consensus 152 --~pdg~~v~v~dl---G------------~D~v~~~~~~~~-------------------------------------- 176 (345)
T PF10282_consen 152 --SPDGRFVYVPDL---G------------ADRVYVYDIDDD-------------------------------------- 176 (345)
T ss_dssp ---TTSSEEEEEET---T------------TTEEEEEEE-TT--------------------------------------
T ss_pred --CCCCCEEEEEec---C------------CCEEEEEEEeCC--------------------------------------
Confidence 223455554321 2 458999999731
Q ss_pred ccCCCCCCCCcCCccccccccceEEEEEEEe--cCCceEEEeee-CCceEEEE--eCCeEEEEeeCCCCcccceeeeecc
Q 011732 154 SLCSSPDDASCDGIKLEETETWQLRLAYSTT--WPGMVLAICPY-LDRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGR 228 (478)
Q Consensus 154 ~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~--~~G~V~ai~~~-~g~~Ll~a--vg~~l~v~~l~~~~~~~L~~~a~~~ 228 (478)
..+|+...... ....+..|.-- +|+++.+. .++.|.+|++..++. .++......
T Consensus 177 --------------------~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g-~~~~~~~~~ 235 (345)
T PF10282_consen 177 --------------------TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG-SLTEIQTIS 235 (345)
T ss_dssp --------------------S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-EEEEEEEEE
T ss_pred --------------------CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC-ceeEEEEee
Confidence 01243333333 23345555533 35544444 378899999984222 233322211
Q ss_pred c-------ceeEEEEEE--eCCEEEEeec-CCcEEEEEEeccCceEEEEecCCC-CceeEEEEee-cCCeEEEeC-CCCc
Q 011732 229 T-------RFMIMLLTA--HFTRIAVGDC-RDGILFYSYHEDARKLEQIYCDPS-QRLVADCVLM-DVDTAVVSD-RKGS 295 (478)
Q Consensus 229 ~-------~~~i~sL~~--~~n~IlvgD~-~~Sv~ll~y~~~~~~L~~varD~~-~~~vta~~~l-d~~~~l~aD-~~gN 295 (478)
+ ......|.. .+.+++|+.. .++|.+|..+++.++|..+..=+. ..+...+.+= |.+.++++. ..++
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 1 113444444 4899999986 558999999877777877654322 2334455542 344555565 5778
Q ss_pred EEEEecCCCcccCCCCCccceeeeeeecCccccEE
Q 011732 296 IAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSI 330 (478)
Q Consensus 296 l~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~ 330 (478)
+.+|+.+.. ++ +|.......-...++++
T Consensus 316 v~vf~~d~~-----tG--~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 316 VSVFDIDPD-----TG--KLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp EEEEEEETT-----TT--EEEEEEEEEESSSEEEE
T ss_pred EEEEEEeCC-----CC--cEEEecccccCCCCEEE
Confidence 999998641 22 46666543333333443
No 69
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=90.12 E-value=3.3 Score=43.82 Aligned_cols=199 Identities=13% Similarity=0.132 Sum_probs=120.3
Q ss_pred eeEEEeCCCCcCEEEEecCC-CeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECC-eeEEEEe
Q 011732 8 NVRKFHLGGTPKKVLYHSES-RLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-EQVLVVG 85 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~-~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~-~~~l~VG 85 (478)
-..+..++..|..+-|||+. +.|+|++++ +.|+.+|-.+++++..|. ++.-|+..+.|-. ..++| -
T Consensus 292 ~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd-------~ki~~wDiRs~kvvqeYd----~hLg~i~~i~F~~~g~rFi-s 359 (503)
T KOG0282|consen 292 VLSRFHLDKVPTCVKFHPDNQNIFLVGGSD-------KKIRQWDIRSGKVVQEYD----RHLGAILDITFVDEGRRFI-S 359 (503)
T ss_pred EEEEEecCCCceeeecCCCCCcEEEEecCC-------CcEEEEeccchHHHHHHH----hhhhheeeeEEccCCceEe-e
Confidence 35678899999999999998 788887653 479999999999877664 5666776676643 23333 2
Q ss_pred eecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcC
Q 011732 86 TSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCD 165 (478)
Q Consensus 86 T~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (478)
|+ | -+.+.+|+... |
T Consensus 360 sS-----------D----dks~riWe~~~--------------------------------------------~------ 374 (503)
T KOG0282|consen 360 SS-----------D----DKSVRIWENRI--------------------------------------------P------ 374 (503)
T ss_pred ec-----------c----CccEEEEEcCC--------------------------------------------C------
Confidence 22 1 23777888762 1
Q ss_pred CccccccccceEEEEEEEe-cCCceEEEeeeCCceEEEE--eCCeEEEEeeCCCCcccceeeeecc---cceeEEEEEE-
Q 011732 166 GIKLEETETWQLRLAYSTT-WPGMVLAICPYLDRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGR---TRFMIMLLTA- 238 (478)
Q Consensus 166 g~~~~~~~~~~l~l~~~~~-~~G~V~ai~~~~g~~Ll~a--vg~~l~v~~l~~~~~~~L~~~a~~~---~~~~i~sL~~- 238 (478)
..++++.... ..-|..++.+..+- ++| .++.+++|+....- .+.+...+. ..=|...+..
T Consensus 375 ---------v~ik~i~~~~~hsmP~~~~~P~~~~--~~aQs~dN~i~ifs~~~~~--r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 375 ---------VPIKNIADPEMHTMPCLTLHPNGKW--FAAQSMDNYIAIFSTVPPF--RLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred ---------ccchhhcchhhccCcceecCCCCCe--ehhhccCceEEEEeccccc--ccCHhhhhcceeccCceeeEEEc
Confidence 1233333222 34566666676443 344 58888999865411 122222122 2225555554
Q ss_pred -eCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeec--CCeEEEeCCCCcEEEE
Q 011732 239 -HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVL 299 (478)
Q Consensus 239 -~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld--~~~~l~aD~~gNl~vl 299 (478)
.|.+++-||.--.+.++.|++.. +.-.-+-. .--|+.+..-. ...++.++-+|-|-++
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt~k--l~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKTTK--LVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred CCCCeEEeecCCccEEEeechhhh--hhhccccC-CcceEEEEecCCCcceeEecccCceeEec
Confidence 47999999999999999997532 11111111 12344444332 3367777888877654
No 70
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.06 E-value=24 Score=35.86 Aligned_cols=191 Identities=14% Similarity=0.211 Sum_probs=115.6
Q ss_pred CeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEE
Q 011732 28 RLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRL 107 (478)
Q Consensus 28 ~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri 107 (478)
+.++++....++......|-++|......+..++|.. . +..+.+.++..++|= ..+|
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~--~---I~~V~l~r~riVvvl------------------~~~I 115 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNS--E---IKAVKLRRDRIVVVL------------------ENKI 115 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecccCcEEEEEEecc--c---eeeEEEcCCeEEEEe------------------cCeE
Confidence 4445444323333345788899977666666666542 2 344556666666653 5689
Q ss_pred EEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEec--
Q 011732 108 IVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTW-- 185 (478)
Q Consensus 108 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~-- 185 (478)
+||.+. + .+++++..+.
T Consensus 116 ~VytF~----------------------------------------------~---------------n~k~l~~~et~~ 134 (346)
T KOG2111|consen 116 YVYTFP----------------------------------------------D---------------NPKLLHVIETRS 134 (346)
T ss_pred EEEEcC----------------------------------------------C---------------Chhheeeeeccc
Confidence 999986 1 2344554443
Q ss_pred -CCceEEEeeeCCceEEEEeCCe---EEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccC
Q 011732 186 -PGMVLAICPYLDRYFLASAGNA---FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA 261 (478)
Q Consensus 186 -~G~V~ai~~~~g~~Ll~avg~~---l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~ 261 (478)
+..+-++++..++.++|.-|.+ |.+.++.......=.-+..++..+-.+.|...|.+| +.-..++-.+=-|+.+.
T Consensus 135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~v-ATaStkGTLIRIFdt~~ 213 (346)
T KOG2111|consen 135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLV-ATASTKGTLIRIFDTED 213 (346)
T ss_pred CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEE-EEeccCcEEEEEEEcCC
Confidence 2335566666676677877766 666666542110001123344455555555555544 44455665555677765
Q ss_pred -ceEEEEecCCCCceeEEEEeecCC-eEEEeCCCCcEEEEecCC
Q 011732 262 -RKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 262 -~~L~~varD~~~~~vta~~~ld~~-~~l~aD~~gNl~vl~~~~ 303 (478)
..+.++-|-..+-.+.++.|=.+. .+.++-..|-+++|..-+
T Consensus 214 g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 214 GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 466788888889899999885444 566677789999999754
No 71
>PTZ00421 coronin; Provisional
Probab=89.61 E-value=31 Score=37.46 Aligned_cols=77 Identities=14% Similarity=0.269 Sum_probs=48.2
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
....|.++|+.+.++.++.+ ..|+++|+.+++.+..+....+.... ...+...+..++.+|...
T Consensus 170 ~V~sla~spdG~lLatgs~D-------g~IrIwD~rsg~~v~tl~~H~~~~~~-~~~w~~~~~~ivt~G~s~-------- 233 (493)
T PTZ00421 170 QITSLEWNLDGSLLCTTSKD-------KKLNIIDPRDGTIVSSVEAHASAKSQ-RCLWAKRKDLIITLGCSK-------- 233 (493)
T ss_pred ceEEEEEECCCCEEEEecCC-------CEEEEEECCCCcEEEEEecCCCCcce-EEEEcCCCCeEEEEecCC--------
Confidence 56788889988877766532 47999999999887765544333222 223332334455555332
Q ss_pred CCCCcCcceEEEEEEEEe
Q 011732 97 SGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~ 114 (478)
...|.|.+|++.+
T Consensus 234 -----s~Dr~VklWDlr~ 246 (493)
T PTZ00421 234 -----SQQRQIMLWDTRK 246 (493)
T ss_pred -----CCCCeEEEEeCCC
Confidence 1357899999873
No 72
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=89.59 E-value=14 Score=36.43 Aligned_cols=109 Identities=10% Similarity=0.103 Sum_probs=61.1
Q ss_pred CceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceeeeecccc---eeEEEEEEeCCEEEEeecCCcEEEEEEeccCc
Q 011732 187 GMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTR---FMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR 262 (478)
Q Consensus 187 G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~---~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~ 262 (478)
+-|.+++--. +++|++|.++.|++|++...+. .|++.++.+ ..++.....|--++-|----.+-+...+.
T Consensus 41 sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np---~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~--- 114 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNP---NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--- 114 (311)
T ss_pred cceeeEEEcCCcchhhhccCCeeEEEEccCCCC---CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC---
Confidence 4555555333 3448888899999999986432 345555443 33444444444444443333333333221
Q ss_pred eEEEEecCCCCceeEEEEeec--CCeEEEeCCCCcEEEEecCC
Q 011732 263 KLEQIYCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 263 ~L~~varD~~~~~vta~~~ld--~~~~l~aD~~gNl~vl~~~~ 303 (478)
-..-|.+.........++. ...+|++|.+|||++.++-.
T Consensus 115 --~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 115 --LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred --cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 2223444444433444443 44899999999999999753
No 73
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.49 E-value=2.6 Score=43.50 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=73.2
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCC-cEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSG-SVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~-~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
+.-|-|.|...++-.++.-+ .+.||+||+... +++.+|.|. |++++. +..+.+..+|++|++
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~-----~hqvR~YDt~~qRRPV~~fd~~--E~~is~-~~l~p~gn~Iy~gn~--------- 267 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITR-----YHQVRLYDTRHQRRPVAQFDFL--ENPISS-TGLTPSGNFIYTGNT--------- 267 (412)
T ss_pred eccceecCCCCCceEEEEec-----ceeEEEecCcccCcceeEeccc--cCccee-eeecCCCcEEEEecc---------
Confidence 44566666533444433322 478999999886 577877776 666543 233345678888866
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
+|-+-.|+... .+
T Consensus 268 -------~g~l~~FD~r~------------------------------------------------------------~k 280 (412)
T KOG3881|consen 268 -------KGQLAKFDLRG------------------------------------------------------------GK 280 (412)
T ss_pred -------cchhheecccC------------------------------------------------------------ce
Confidence 56677777762 23
Q ss_pred EEEEEEEecCCceEEEeeeCCceEEEEeCCe--EEEEeeCC
Q 011732 177 LRLAYSTTWPGMVLAICPYLDRYFLASAGNA--FYVCGFPN 215 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~--l~v~~l~~ 215 (478)
+--..-..+.|.+.+|....++-+++.+|=. |+||+.+.
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 3333345688999999888773266666644 78888875
No 74
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=89.08 E-value=33 Score=36.18 Aligned_cols=102 Identities=20% Similarity=0.294 Sum_probs=63.1
Q ss_pred eeEEEEEeCCCCcEEEEEECC-------CCCceEEEEEEEE--CCe----eEEEEeeecCCCCCCCCCCCCcCcceEEEE
Q 011732 43 SSDICCVDPLSGSVLSSFKLE-------LGETGKSMELVRV--GHE----QVLVVGTSLSSGPAIMPSGEAESTKGRLIV 109 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~-------~~E~~~s~~~~~l--~~~----~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v 109 (478)
.++|-++|...=.+|..-.+. ..+.++|++...+ +++ .+++|||. .|.+++
T Consensus 106 ~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn----------------~G~v~~ 169 (395)
T PF08596_consen 106 SGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN----------------SGNVLT 169 (395)
T ss_dssp TSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET----------------TSEEEE
T ss_pred CCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC----------------CCCEEE
Confidence 468999999877777664443 3577777655544 433 79999998 599999
Q ss_pred EEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEE-ecCCc
Q 011732 110 LCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYST-TWPGM 188 (478)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~-~~~G~ 188 (478)
|.+.- + . .+++..+.+... ..+++
T Consensus 170 fkIlp---------------------------------~-----------~-----------~g~f~v~~~~~~~~~~~~ 194 (395)
T PF08596_consen 170 FKILP---------------------------------S-----------S-----------NGRFSVQFAGATTNHDSP 194 (395)
T ss_dssp EEEEE---------------------------------------------G-----------GG-EEEEEEEEE--SS--
T ss_pred EEEec---------------------------------C-----------C-----------CCceEEEEeeccccCCCc
Confidence 99982 1 0 012777888877 67799
Q ss_pred eEEEeeeC-----------------------CceEEEEeCCeEEEEeeCC
Q 011732 189 VLAICPYL-----------------------DRYFLASAGNAFYVCGFPN 215 (478)
Q Consensus 189 V~ai~~~~-----------------------g~~Ll~avg~~l~v~~l~~ 215 (478)
|.+|+.++ .+|++++.-+.+++|....
T Consensus 195 i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 195 ILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp --EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred eEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 99999882 1356777777788888775
No 75
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.55 E-value=38 Score=36.23 Aligned_cols=114 Identities=7% Similarity=0.047 Sum_probs=73.7
Q ss_pred ecCCceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEecc
Q 011732 184 TWPGMVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED 260 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~ 260 (478)
....+|++++-.. |. ++++. ..++++|+.+. .+.++.+.....+....+....+++|+.++...-+.+ |+..
T Consensus 244 gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~v--wd~~ 318 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRV--WDLE 318 (456)
T ss_pred CCCCceEEEEecCCCC-EEEEecCCCcEEEEeccC--CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEE--EECC
Confidence 6788899988554 45 44444 45599999987 2335555555556666666677899999977444444 5666
Q ss_pred Cce---EEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 261 ARK---LEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 261 ~~~---L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
.+. +.++.++..+..++.+.|= +...++.+=.++.+.++.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 319 TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 665 3455555555467777773 44466666666677776664
No 76
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=88.27 E-value=33 Score=35.21 Aligned_cols=93 Identities=12% Similarity=-0.036 Sum_probs=48.0
Q ss_pred EEEE-eCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEE
Q 011732 200 FLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVAD 278 (478)
Q Consensus 200 Ll~a-vg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta 278 (478)
++++ .+..++.++... .+.+-... ... .....+.+++|++++....+..+ +...+++.--..+.......+
T Consensus 244 vy~~~~~g~l~a~d~~t--G~~~W~~~---~~~-~~~p~~~~~~vyv~~~~G~l~~~--d~~tG~~~W~~~~~~~~~~ss 315 (377)
T TIGR03300 244 VYAVSYQGRVAALDLRS--GRVLWKRD---ASS-YQGPAVDDNRLYVTDADGVVVAL--DRRSGSELWKNDELKYRQLTA 315 (377)
T ss_pred EEEEEcCCEEEEEECCC--CcEEEeec---cCC-ccCceEeCCEEEEECCCCeEEEE--ECCCCcEEEccccccCCcccc
Confidence 4444 356678887754 22111111 111 22344568999998865555554 444443321111111111122
Q ss_pred EEeecCCeEEEeCCCCcEEEEec
Q 011732 279 CVLMDVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 279 ~~~ld~~~~l~aD~~gNl~vl~~ 301 (478)
-.+..+.+++.+.+|.+++++.
T Consensus 316 -p~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 316 -PAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred -CEEECCEEEEEeCCCEEEEEEC
Confidence 2335568888899999999874
No 77
>PHA03098 kelch-like protein; Provisional
Probab=87.77 E-value=31 Score=37.41 Aligned_cols=77 Identities=12% Similarity=0.001 Sum_probs=43.5
Q ss_pred CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEE-eecCC------cEEEEEEeccCceEEEEecCCCCceeEE
Q 011732 206 NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD------GILFYSYHEDARKLEQIYCDPSQRLVAD 278 (478)
Q Consensus 206 ~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Ilv-gD~~~------Sv~ll~y~~~~~~L~~varD~~~~~vta 278 (478)
+.+..|+...+ + +..++....+....+..+.+++|++ |-.-. .-.+..|++..++-..++.-+.+++-.+
T Consensus 406 ~~v~~yd~~t~--~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 482 (534)
T PHA03098 406 KTVECFSLNTN--K-WSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINAS 482 (534)
T ss_pred ceEEEEeCCCC--e-eeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccce
Confidence 34677776642 2 4433332223333455666777754 42211 1126788998888888876666777655
Q ss_pred EEeecCC
Q 011732 279 CVLMDVD 285 (478)
Q Consensus 279 ~~~ld~~ 285 (478)
+..+++.
T Consensus 483 ~~~~~~~ 489 (534)
T PHA03098 483 LCIFNNK 489 (534)
T ss_pred EEEECCE
Confidence 5555554
No 78
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=87.68 E-value=11 Score=40.80 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=62.6
Q ss_pred CceEEEeeeC-CceEEEEeCCe--EEEEeeCCCCcccceee-eecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCc
Q 011732 187 GMVLAICPYL-DRYFLASAGNA--FYVCGFPNDNPQRVRRF-AVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR 262 (478)
Q Consensus 187 G~V~ai~~~~-g~~Ll~avg~~--l~v~~l~~~~~~~L~~~-a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~ 262 (478)
|+|...+-.. |+ -+++|++. |+||++.. ++|..+ .+|-..+..++-+..+.+|++|---+=|+++.|-+ .
T Consensus 291 g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt---~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e--r 364 (636)
T KOG2394|consen 291 GSINEFAFSPDGK-YLATVSQDGFLRIFDFDT---QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE--R 364 (636)
T ss_pred ccccceeEcCCCc-eEEEEecCceEEEeeccH---HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc--c
Confidence 4555555444 56 45666555 89999986 556543 36667778888888899999998888899988743 2
Q ss_pred eEEEEec-CCCCceeEEEEe
Q 011732 263 KLEQIYC-DPSQRLVADCVL 281 (478)
Q Consensus 263 ~L~~var-D~~~~~vta~~~ 281 (478)
..||| .-+..||+.+.|
T Consensus 365 --RVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 365 --RVVARGQGHKSWVSVVAF 382 (636)
T ss_pred --eEEEeccccccceeeEee
Confidence 45566 466889988887
No 79
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.46 E-value=11 Score=38.08 Aligned_cols=82 Identities=7% Similarity=0.024 Sum_probs=49.9
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCC------CCcEEEEEE-----CCCCCceEEEEEEEECC--eeEEE
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL------SGSVLSSFK-----LELGETGKSMELVRVGH--EQVLV 83 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~------t~~~i~~~~-----l~~~E~~~s~~~~~l~~--~~~l~ 83 (478)
...-|.|-|...-+-+++... -+.||+|+.- .|.+.+.+. ...++...+...|...+ +++|+
T Consensus 114 sV~DV~FaP~hlGLklA~~~a-----DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iA 188 (361)
T KOG2445|consen 114 SVTDVKFAPKHLGLKLAAASA-----DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIA 188 (361)
T ss_pred ceeEEEecchhcceEEEEecc-----CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEE
Confidence 566677776544333333212 2567777642 344433322 22456665556676553 69999
Q ss_pred EeeecCCCCCCCCCCCCcCcceEEEEEEEEe
Q 011732 84 VGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 84 VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~ 114 (478)
||.- |+.+-.++.++|+.++
T Consensus 189 vgs~-----------e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 189 VGSD-----------EDAPHLNKVKIYEYNE 208 (361)
T ss_pred EEcc-----------cCCccccceEEEEecC
Confidence 9954 6778899999999984
No 80
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.39 E-value=34 Score=34.77 Aligned_cols=82 Identities=22% Similarity=0.340 Sum_probs=66.8
Q ss_pred eEEEeCCC-CcCEEEEecCCCeEEEEE----Ee-------eCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEE
Q 011732 9 VRKFHLGG-TPKKVLYHSESRLLIVMR----TE-------LNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRV 76 (478)
Q Consensus 9 ir~i~L~~-tp~ki~y~~~~~~~~v~~----~~-------~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l 76 (478)
+..++.++ -|+-|..+|+.+.++|+- +. .|-.+.+++|-++|..|++++...+|++.-+=+|+.-+-+
T Consensus 91 i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~ 170 (305)
T PF07433_consen 91 IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV 170 (305)
T ss_pred EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEe
Confidence 34455555 799999999999999874 21 1225778999999999999999999999999999998888
Q ss_pred CCeeEEEEeeecCC
Q 011732 77 GHEQVLVVGTSLSS 90 (478)
Q Consensus 77 ~~~~~l~VGT~~~~ 90 (478)
..+-.+++|.-+.-
T Consensus 171 ~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 171 DGDGTVAFAMQYQG 184 (305)
T ss_pred cCCCcEEEEEecCC
Confidence 88888888887643
No 81
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=87.31 E-value=38 Score=34.81 Aligned_cols=119 Identities=14% Similarity=0.153 Sum_probs=69.5
Q ss_pred eCCeEEEEeeCCCCcccceee--------eeccc-ceeEEEEEEeCCEEEEeec-CCcEEEEEEeccCceEEEEecCCC-
Q 011732 204 AGNAFYVCGFPNDNPQRVRRF--------AVGRT-RFMIMLLTAHFTRIAVGDC-RDGILFYSYHEDARKLEQIYCDPS- 272 (478)
Q Consensus 204 vg~~l~v~~l~~~~~~~L~~~--------a~~~~-~~~i~sL~~~~n~IlvgD~-~~Sv~ll~y~~~~~~L~~varD~~- 272 (478)
.+++|.+|++... .+++..+ .|... ..-...|+..|.|+++.+- .+||++|+.++..++|..++.-+.
T Consensus 211 L~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te 289 (346)
T COG2706 211 LNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE 289 (346)
T ss_pred cCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC
Confidence 4566777777652 1222221 22211 2245566667899999987 459999999999999998875433
Q ss_pred CceeEEEEeecCC-e-EEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEE
Q 011732 273 QRLVADCVLMDVD-T-AVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSI 330 (478)
Q Consensus 273 ~~~vta~~~ld~~-~-~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~ 330 (478)
.++-.+..+=..+ . +++..+..||.+|+.++. .+ +|.....+-.+-.++++
T Consensus 290 g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~-----TG--~L~~~~~~~~~p~Pvcv 342 (346)
T COG2706 290 GQFPRDFNINPSGRFLIAANQKSDNITVFERDKE-----TG--RLTLLGRYAVVPEPVCV 342 (346)
T ss_pred CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC-----Cc--eEEecccccCCCCcEEE
Confidence 3333444432222 3 333456778999998762 22 45555553333333444
No 82
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.17 E-value=8.6 Score=42.89 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=45.3
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEE-CCeeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRV-GHEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l-~~~~~l~VGT~~~~g~~~~ 95 (478)
-.+.+.|||.+...+-..+++ ++|++|-.++..+--| .++... +..+.+ ....||+-|-
T Consensus 537 DV~cv~FHPNs~Y~aTGSsD~-------tVRlWDv~~G~~VRiF---~GH~~~-V~al~~Sp~Gr~LaSg~--------- 596 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATGSSDR-------TVRLWDVSTGNSVRIF---TGHKGP-VTALAFSPCGRYLASGD--------- 596 (707)
T ss_pred ccceEEECCcccccccCCCCc-------eEEEEEcCCCcEEEEe---cCCCCc-eEEEEEcCCCceEeecc---------
Confidence 356688888777666664433 7889998888776555 243332 222333 2457777662
Q ss_pred CCCCCcCcceEEEEEEEE
Q 011732 96 PSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~ 113 (478)
.-|+|++|++.
T Consensus 597 -------ed~~I~iWDl~ 607 (707)
T KOG0263|consen 597 -------EDGLIKIWDLA 607 (707)
T ss_pred -------cCCcEEEEEcC
Confidence 36899999997
No 83
>PHA02713 hypothetical protein; Provisional
Probab=87.10 E-value=53 Score=36.23 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=58.3
Q ss_pred eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEE-eecC---CcE-EEEEEeccC-ceEEEEecCCCCceeEEEE
Q 011732 207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCR---DGI-LFYSYHEDA-RKLEQIYCDPSQRLVADCV 280 (478)
Q Consensus 207 ~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Ilv-gD~~---~Sv-~ll~y~~~~-~~L~~varD~~~~~vta~~ 280 (478)
++..|+...+ + +..++.+..+-.-.++.+.++.|+| |... ... .+.+|+++. ++-+.++.=+.+|....+.
T Consensus 433 ~ve~YDP~td--~-W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 433 KVIRYDTVNN--I-WETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred eEEEECCCCC--e-EeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 4677776652 2 4444444333334456778888864 5332 112 357899998 7888888777788888888
Q ss_pred eecCCeEEEeCCCCcEEEEecCC
Q 011732 281 LMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 281 ~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
.+++.-++.+-.+|.-.+-.|++
T Consensus 510 ~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 510 LHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred EECCEEEEEeeecceeehhhcCc
Confidence 88887555555555433444544
No 84
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.66 E-value=5.7 Score=43.98 Aligned_cols=174 Identities=14% Similarity=0.127 Sum_probs=106.8
Q ss_pred ecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCc
Q 011732 24 HSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAEST 103 (478)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~ 103 (478)
....++++++.+ .+.|-|++..+++.. .++.+-.+.++|.+++. ..+.+++.||+
T Consensus 42 dst~~~l~~GsS-------~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs-~~e~lvAagt~---------------- 96 (726)
T KOG3621|consen 42 DATEEYLAMGSS-------AGSVYLYNRHTGEMR-KLKNEGATGITCVRSVS-SVEYLVAAGTA---------------- 96 (726)
T ss_pred ecCCceEEEecc-------cceEEEEecCchhhh-cccccCccceEEEEEec-chhHhhhhhcC----------------
Confidence 344455555543 567888888776642 23444456666655442 23577888877
Q ss_pred ceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEE
Q 011732 104 KGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYST 183 (478)
Q Consensus 104 ~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~ 183 (478)
+||+-||.+.+. .| ..+.++...
T Consensus 97 ~g~V~v~ql~~~------------------------------------------~p---------------~~~~~~t~~ 119 (726)
T KOG3621|consen 97 SGRVSVFQLNKE------------------------------------------LP---------------RDLDYVTPC 119 (726)
T ss_pred CceEEeehhhcc------------------------------------------CC---------------Ccceeeccc
Confidence 799999999841 01 245556655
Q ss_pred ec--CCceEEEeeeCCc-eEEEEe-CCeEEEEeeCCCCccccee-eeecccceeEEEEEEeCCEEEEeecCCcEEEEEEe
Q 011732 184 TW--PGMVLAICPYLDR-YFLASA-GNAFYVCGFPNDNPQRVRR-FAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 184 ~~--~G~V~ai~~~~g~-~Ll~av-g~~l~v~~l~~~~~~~L~~-~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~ 258 (478)
+. +--|+|++.-.+. -|..|- -.+|...++..- ...+-+ .......+.|+.|+....+++|+++.+++.+.
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc~--- 195 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILCQ--- 195 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhccccceeeccCcceEEeecccceehHhhhhhhheee---
Confidence 55 6779999977653 244553 233666666541 011111 12334577899999999999999999999663
Q ss_pred ccCceEEEEecCCCCc--eeEEEEeec
Q 011732 259 EDARKLEQIYCDPSQR--LVADCVLMD 283 (478)
Q Consensus 259 ~~~~~L~~varD~~~~--~vta~~~ld 283 (478)
.+..++..|++-+..- ..-||.|..
T Consensus 196 tE~eti~QIG~k~R~~~~~~GACF~~g 222 (726)
T KOG3621|consen 196 TEAETITQIGKKPRKSLIDFGACFFPG 222 (726)
T ss_pred cchhHHHHhcCCCcCCccccceEEeec
Confidence 4555677777655544 344555544
No 85
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=86.38 E-value=14 Score=31.86 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=29.2
Q ss_pred EEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeC
Q 011732 178 RLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFP 214 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~ 214 (478)
+++++....+.|++++.+.+..++.|. |.+|-+|+-.
T Consensus 34 e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 34 EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc
Confidence 467778888999999999876677776 7778888654
No 86
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=86.31 E-value=42 Score=37.22 Aligned_cols=115 Identities=12% Similarity=0.002 Sum_probs=71.4
Q ss_pred eEEEEEEEecCCceEEEeeeCCceEEEEeC--------CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-Ee
Q 011732 176 QLRLAYSTTWPGMVLAICPYLDRYFLASAG--------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VG 246 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg--------~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vg 246 (478)
+.+.+........=.+++.++|+ |.+.-| +++..|+... ..++.++.+..+-.-..+.+.+++|+ +|
T Consensus 407 ~W~~va~m~~~r~~~gv~~~~g~-iYi~GG~~~~~~~l~sve~YDP~t---~~W~~~~~M~~~R~~~g~a~~~~~iYvvG 482 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVLGGK-LYIIGGGDGSSNCLNSVECYDPET---NTWTLIAPMNTRRSGFGVAVLNGKIYVVG 482 (571)
T ss_pred cccccCCCCcceeeeEEEEECCE-EEEEcCcCCCccccceEEEEcCCC---CceeecCCcccccccceEEEECCEEEEEC
Confidence 44445544444444566777776 555544 4567777665 22555555544444445777888886 55
Q ss_pred ecCCc---EEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCC
Q 011732 247 DCRDG---ILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKG 294 (478)
Q Consensus 247 D~~~S---v~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~g 294 (478)
..... -.+-+|+++.++-..++.-..++....+..++...++++--+|
T Consensus 483 G~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 483 GFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred CccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccC
Confidence 43321 1156789999999999878888888777777777555554333
No 87
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=85.68 E-value=74 Score=36.61 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=69.5
Q ss_pred EEEEEecCCceEEEeeeCCceEEEEeCCe--EEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEE
Q 011732 179 LAYSTTWPGMVLAICPYLDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYS 256 (478)
Q Consensus 179 l~~~~~~~G~V~ai~~~~g~~Ll~avg~~--l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~ 256 (478)
++....++--+.++.. .|. .+++.+.. |.+.+....+ +..+ ..-.+.+...+++...++++++.+.--.|.++.
T Consensus 91 iL~Rftlp~r~~~v~g-~g~-~iaagsdD~~vK~~~~~D~s-~~~~-lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSG-SGK-MIAAGSDDTAVKLLNLDDSS-QEKV-LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred eeeeeeccceEEEEec-CCc-EEEeecCceeEEEEeccccc-hhee-ecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 3444444443443332 245 34444333 5666666532 2122 233566777777788899999999999999987
Q ss_pred Eecc--CceEEEEecCCCCc---eeEEEEe-ecCCeEEEeCCCCcEEEEecC
Q 011732 257 YHED--ARKLEQIYCDPSQR---LVADCVL-MDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 257 y~~~--~~~L~~varD~~~~---~vta~~~-ld~~~~l~aD~~gNl~vl~~~ 302 (478)
++.. ...|..+.+|..-. -++-... -+.+.+++.=.++-+.+|+..
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 7643 24566666665433 2322222 244577777777777777754
No 88
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=85.62 E-value=14 Score=39.76 Aligned_cols=130 Identities=14% Similarity=0.128 Sum_probs=71.7
Q ss_pred EEecCCceEEEeeeCC-ceEEEE-eCCeEEEEeeCCCCcccceeee---ecccceeEEEEEEeCCEEEEeecCCcEEEEE
Q 011732 182 STTWPGMVLAICPYLD-RYFLAS-AGNAFYVCGFPNDNPQRVRRFA---VGRTRFMIMLLTAHFTRIAVGDCRDGILFYS 256 (478)
Q Consensus 182 ~~~~~G~V~ai~~~~g-~~Ll~a-vg~~l~v~~l~~~~~~~L~~~a---~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~ 256 (478)
+.++.-.+.+++.-.+ .+++++ ...+|++|.+..++ |+.++ -...+...++.+..+.++++||+++=+.++.
T Consensus 439 ~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~---l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 439 SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE---LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred eeccccccceEEEcCCCCEEEEecccceEEEEEecCCc---ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence 3344434444444333 323333 34559999998743 33222 2334444555556688999999999999976
Q ss_pred EeccCceEEEEecCCCCceeEEE-----EeecCC--eEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccE
Q 011732 257 YHEDARKLEQIYCDPSQRLVADC-----VLMDVD--TAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVS 329 (478)
Q Consensus 257 y~~~~~~L~~varD~~~~~vta~-----~~ld~~--~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~ 329 (478)
... +.. -..+|.... .....+ .+..+--+-|++++.+..+ ... ...-.-|.+. ||+
T Consensus 516 ~~s--~~~------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP-------~~~-i~iknAH~~g-Vn~ 578 (603)
T KOG0318|consen 516 VAS--REV------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP-------AKH-IIIKNAHLGG-VNS 578 (603)
T ss_pred ccc--Cce------ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh-------hhh-eEeccccccC-cee
Confidence 433 211 223343211 112222 4555566999999998643 323 3444556666 777
Q ss_pred EE
Q 011732 330 IR 331 (478)
Q Consensus 330 ~~ 331 (478)
+.
T Consensus 579 v~ 580 (603)
T KOG0318|consen 579 VA 580 (603)
T ss_pred EE
Confidence 64
No 89
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.61 E-value=24 Score=39.44 Aligned_cols=113 Identities=8% Similarity=0.094 Sum_probs=69.5
Q ss_pred cCCceEEEeeeC--CceEEEEeCCe-EEEEeeCCCCcccceeeeecccce-eEEEEE--EeCCEEEEeecCCcEEEEEEe
Q 011732 185 WPGMVLAICPYL--DRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRF-MIMLLT--AHFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 185 ~~G~V~ai~~~~--g~~Ll~avg~~-l~v~~l~~~~~~~L~~~a~~~~~~-~i~sL~--~~~n~IlvgD~~~Sv~ll~y~ 258 (478)
.++-|+.|+-++ ..+|++|.|+. +.+|+....+.+ + +..+. .+.||. ..|.+|+-|---+|+-|.+++
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-i-----i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-I-----IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred CchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-E-----EeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 456788888775 24499998766 899976653323 1 12222 477777 346688888889999999995
Q ss_pred ccCceEEEEecC-CCCceeEEEEe--ecCCeEEEeCCCCcEEEEecCC
Q 011732 259 EDARKLEQIYCD-PSQRLVADCVL--MDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 259 ~~~~~L~~varD-~~~~~vta~~~--ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
....++..+|.- -+...++++.+ +....++.+-.++-|-+..++.
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 544455554433 33444555554 1222444455667666666654
No 90
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.47 E-value=10 Score=33.80 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=45.5
Q ss_pred EecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEE------EEEECCCCCceEEEEEEEEC---CeeEEEEeeecCCCCC
Q 011732 23 YHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVL------SSFKLELGETGKSMELVRVG---HEQVLVVGTSLSSGPA 93 (478)
Q Consensus 23 y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i------~~~~l~~~E~~~s~~~~~l~---~~~~l~VGT~~~~g~~ 93 (478)
|.....|++.+++ ...|-+.+|..-... +.-.|.-|..++|++...|+ +...|+|||..
T Consensus 6 fDG~~pcL~~aT~-------~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t----- 73 (136)
T PF14781_consen 6 FDGVHPCLACATT-------GGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT----- 73 (136)
T ss_pred eCCCceeEEEEec-------CCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-----
Confidence 5556667777764 334555555432111 11345567899999999996 35899999885
Q ss_pred CCCCCCCcCcceEEEEEEEEe
Q 011732 94 IMPSGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~ 114 (478)
.|++|++.+
T Consensus 74 ------------~llaYDV~~ 82 (136)
T PF14781_consen 74 ------------SLLAYDVEN 82 (136)
T ss_pred ------------eEEEEEccc
Confidence 579999984
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=85.46 E-value=41 Score=33.49 Aligned_cols=188 Identities=11% Similarity=0.027 Sum_probs=110.3
Q ss_pred EEEEEecCCceEEEeee-CCceEEEEe----CCe--EEEEeeCCCCcccceeeeecccceeEEEEE-----EeCCEEEEe
Q 011732 179 LAYSTTWPGMVLAICPY-LDRYFLASA----GNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLT-----AHFTRIAVG 246 (478)
Q Consensus 179 l~~~~~~~G~V~ai~~~-~g~~Ll~av----g~~--l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~-----~~~n~Ilvg 246 (478)
.++..+.+-||-.+.-. .|.+++++. |.. |.+|+++++.++.-....++..+..-.++. ..+.+|+.|
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG 165 (327)
T ss_pred EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence 45667788888877643 355344442 333 789999875432111111333343333333 458999999
Q ss_pred ecCCcEEEEEEeccCc-eEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecC
Q 011732 247 DCRDGILFYSYHEDAR-KLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMG 324 (478)
Q Consensus 247 D~~~Sv~ll~y~~~~~-~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlG 324 (478)
+---++..+ +...+ .++..+ +.+...++++.+- |...+|.+-++-+-.+++.. .|+..-.|..-
T Consensus 166 he~G~is~~--da~~g~~~v~s~-~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~-----------tl~v~Kty~te 231 (327)
T KOG0643|consen 166 HEDGSISIY--DARTGKELVDSD-EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR-----------TLEVLKTYTTE 231 (327)
T ss_pred cCCCcEEEE--EcccCceeeech-hhhccccccccccCCcceEEecccCccceeeecc-----------ceeeEEEeeec
Confidence 999998875 55554 444444 4444577777764 44578888888887777653 46666666666
Q ss_pred ccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEE--------eCCCceEEEEecCHHHHHHHH-HHHHHHhcCCCC
Q 011732 325 EIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIAS--------TLLGSIVIFIPISSEEYELLE-AVQARLAIHPLT 395 (478)
Q Consensus 325 d~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~--------T~~GsIg~i~pi~e~~~~~L~-~LQ~~L~~~~~~ 395 (478)
..||+-....+ ..+.|+.| |..+..| +-+.+++. .+|..+.+ +-
T Consensus 232 ~PvN~aaisP~-------------------~d~VilgGGqeA~dVTTT~~r~G------KFEArFyh~i~eEEigr--vk 284 (327)
T KOG0643|consen 232 RPVNTAAISPL-------------------LDHVILGGGQEAMDVTTTSTRAG------KFEARFYHLIFEEEIGR--VK 284 (327)
T ss_pred ccccceecccc-------------------cceEEecCCceeeeeeeeccccc------chhhhHHHHHHHHHhcc--cc
Confidence 66665533221 12333332 3333333 33556664 46777887 55
Q ss_pred CCcCCCCccccc
Q 011732 396 APLLGNDHSEFR 407 (478)
Q Consensus 396 ~~~~gl~~~~~R 407 (478)
.+.|.+|.-+|.
T Consensus 285 GHFGPINsvAfh 296 (327)
T KOG0643|consen 285 GHFGPINSVAFH 296 (327)
T ss_pred ccccCcceeEEC
Confidence 788888877754
No 92
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=85.38 E-value=47 Score=36.82 Aligned_cols=106 Identities=12% Similarity=0.009 Sum_probs=73.8
Q ss_pred EEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEE-ee--cCC-c-EEEEE
Q 011732 182 STTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GD--CRD-G-ILFYS 256 (478)
Q Consensus 182 ~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Ilv-gD--~~~-S-v~ll~ 256 (478)
-..+.|.+|+|-.++|. ..-+++..|+... ..+..++.+..+-......+.+++|++ |- ... . =++..
T Consensus 376 v~~l~g~iYavGG~dg~----~~l~svE~YDp~~---~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGE----KSLNSVECYDPVT---NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred eEEECCEEEEEeccccc----cccccEEEecCCC---CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEE
Confidence 35677888888777653 1123577787775 336666766666677778888888864 32 221 1 23456
Q ss_pred EeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCC
Q 011732 257 YHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKG 294 (478)
Q Consensus 257 y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~g 294 (478)
|++..++-..++.=..+|....+..+++.-|+++..+|
T Consensus 449 YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred EcCCCCceeecCCcccccccceEEEECCEEEEECCccC
Confidence 89999999999988888888888888888777766665
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=85.04 E-value=24 Score=35.01 Aligned_cols=126 Identities=11% Similarity=0.155 Sum_probs=79.8
Q ss_pred eEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCc
Q 011732 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSM 123 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~ 123 (478)
-.++++|..+.+.+...+...++...+ |.. ...|++||-. .-+|-.+++.+
T Consensus 87 k~ir~wd~r~~k~~~~i~~~~eni~i~---wsp-~g~~~~~~~k----------------dD~it~id~r~--------- 137 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETKGENINIT---WSP-DGEYIAVGNK----------------DDRITFIDART--------- 137 (313)
T ss_pred ceEEEEEeccCcEEEEeeccCcceEEE---EcC-CCCEEEEecC----------------cccEEEEEecc---------
Confidence 369999999999988888775555433 333 3477777743 23555565552
Q ss_pred cccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEee-eCCceEEE
Q 011732 124 TFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICP-YLDRYFLA 202 (478)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~-~~g~~Ll~ 202 (478)
.+.+++.+++--|.-++. +.+.+++.
T Consensus 138 -----------------------------------------------------~~~~~~~~~~~e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 138 -----------------------------------------------------YKIVNEEQFKFEVNEISWNNSNDLFFL 164 (313)
T ss_pred -----------------------------------------------------cceeehhcccceeeeeeecCCCCEEEE
Confidence 223344444444444443 33453555
Q ss_pred EeC-CeEEEEeeCCCCcccceeeeeccc---ceeEEEEEEeCCEEEEeecCCcEEEEE
Q 011732 203 SAG-NAFYVCGFPNDNPQRVRRFAVGRT---RFMIMLLTAHFTRIAVGDCRDGILFYS 256 (478)
Q Consensus 203 avg-~~l~v~~l~~~~~~~L~~~a~~~~---~~~i~sL~~~~n~IlvgD~~~Sv~ll~ 256 (478)
..| .+|.+.+|-. |+++..+.. +.+..++...|-+..+|-+--.++|..
T Consensus 165 t~GlG~v~ILsyps-----Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 165 TNGLGCVEILSYPS-----LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWD 217 (313)
T ss_pred ecCCceEEEEeccc-----cccccccccCCcceEEEEECCCCceEeeccccceeeccC
Confidence 556 6799999975 777665543 346666777789999997777777743
No 94
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=84.77 E-value=40 Score=33.23 Aligned_cols=122 Identities=13% Similarity=0.206 Sum_probs=70.1
Q ss_pred eEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCc-ccceeeeecccce--------eEEEE--EEeC-CEE
Q 011732 176 QLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNP-QRVRRFAVGRTRF--------MIMLL--TAHF-TRI 243 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~-~~L~~~a~~~~~~--------~i~sL--~~~~-n~I 243 (478)
|++.+.+.-.+||||.|...++. |+.|--..|+=|.|.+..+ .-+++.=....|. .|.+| .... ..+
T Consensus 52 k~~iv~eqahdgpiy~~~f~d~~-Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFHDDF-LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred CcceeeccccCCCeeeeeeehhh-eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence 67788888899999999999777 7766667789999976322 1111100001111 23333 3333 444
Q ss_pred EEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEecC
Q 011732 244 AVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 244 lvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~ 302 (478)
++| =++ .++.++-+.+++...-|-.. -++-++.--. ...++.+-.+|-+.+.+.-
T Consensus 131 ~Ag--GD~-~~y~~dlE~G~i~r~~rGHt-DYvH~vv~R~~~~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 131 FAG--GDG-VIYQVDLEDGRIQREYRGHT-DYVHSVVGRNANGQILSGAEDGTVRVWDTK 186 (325)
T ss_pred Eec--CCe-EEEEEEecCCEEEEEEcCCc-ceeeeeeecccCcceeecCCCccEEEEecc
Confidence 454 333 36778888888876644311 1121221112 2367777788888887753
No 95
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=84.70 E-value=6.6 Score=42.61 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=61.3
Q ss_pred CCCCeeeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEE
Q 011732 3 HNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVL 82 (478)
Q Consensus 3 ~~~~l~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l 82 (478)
.+|+..+.+|||+..+.--+.+|+...++++|.+ ++|.++|..+...... ..+.+-....|.- +..++
T Consensus 247 klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D-------gSiiLyD~~~~~t~~~----ka~~~P~~iaWHp-~gai~ 314 (545)
T PF11768_consen 247 KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCED-------GSIILYDTTRGVTLLA----KAEFIPTLIAWHP-DGAIF 314 (545)
T ss_pred ceeEEEEEEEecCCcceEEecCcccceEEEEecC-------CeEEEEEcCCCeeeee----eecccceEEEEcC-CCcEE
Confidence 4678899999999999999999999999999973 5799999876543211 1122222233322 34788
Q ss_pred EEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 83 ~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
+||.. +|.|.+|++-
T Consensus 315 ~V~s~----------------qGelQ~FD~A 329 (545)
T PF11768_consen 315 VVGSE----------------QGELQCFDMA 329 (545)
T ss_pred EEEcC----------------CceEEEEEee
Confidence 88844 8999999997
No 96
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.66 E-value=24 Score=37.08 Aligned_cols=198 Identities=11% Similarity=0.109 Sum_probs=110.4
Q ss_pred EeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCC
Q 011732 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG 91 (478)
Q Consensus 12 i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g 91 (478)
+....+.-.|.++|+.+.++.+..+. ++++.|..|++....|+-..+-.+.| +.|.-++.. +|+|..
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e-------~~~lwDv~tgd~~~~y~~~~~~S~~s-c~W~pDg~~-~V~Gs~---- 332 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDE-------VLSLWDVDTGDLRHLYPSGLGFSVSS-CAWCPDGFR-FVTGSP---- 332 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchH-------heeeccCCcchhhhhcccCcCCCcce-eEEccCCce-eEecCC----
Confidence 34445788899999888666554322 49999999999876665543333333 445444444 555632
Q ss_pred CCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccc
Q 011732 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (478)
.+.++.|+.+-.- +
T Consensus 333 ------------dr~i~~wdlDgn~----------------------------------------------------~-- 346 (519)
T KOG0293|consen 333 ------------DRTIIMWDLDGNI----------------------------------------------------L-- 346 (519)
T ss_pred ------------CCcEEEecCCcch----------------------------------------------------h--
Confidence 2667777776200 0
Q ss_pred cccceEEEEEEEecC-CceEEEe-eeCCce-EEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CCEEEEe
Q 011732 172 TETWQLRLAYSTTWP-GMVLAIC-PYLDRY-FLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVG 246 (478)
Q Consensus 172 ~~~~~l~l~~~~~~~-G~V~ai~-~~~g~~-Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n~Ilvg 246 (478)
..|+- ++ -.|+.|+ ...|+| ++++..+++.+|..+. +.=+ ......-.|+++... +-+++|-
T Consensus 347 -~~W~g-------vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~---~~dr--~lise~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 347 -GNWEG-------VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA---RVDR--GLISEEQPITSFSISKDGKLALVN 413 (519)
T ss_pred -hcccc-------cccceeEEEEEcCCCcEEEEEecccceeeechhh---hhhh--ccccccCceeEEEEcCCCcEEEEE
Confidence 00111 11 2244444 345665 4566788899998875 2112 122233456666655 4677787
Q ss_pred ecCCcEEEEEEeccCceEEE-EecCCCCceeEEEEe--ecCCeEEEeCCCCcEEEEecCC
Q 011732 247 DCRDGILFYSYHEDARKLEQ-IYCDPSQRLVADCVL--MDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 247 D~~~Sv~ll~y~~~~~~L~~-varD~~~~~vta~~~--ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
=.-+.+.+..+. +++++. .-..-..+.+...-| .++..++.+-.++-+++...-.
T Consensus 414 L~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 414 LQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred cccCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 777888887664 333332 122223334432223 2333555556688999888643
No 97
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=84.58 E-value=25 Score=37.31 Aligned_cols=137 Identities=9% Similarity=0.109 Sum_probs=82.5
Q ss_pred EEecCCceEEEeeeCCc--eEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCC-EEEEeecCCcEEEEEEe
Q 011732 182 STTWPGMVLAICPYLDR--YFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFT-RIAVGDCRDGILFYSYH 258 (478)
Q Consensus 182 ~~~~~G~V~ai~~~~g~--~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n-~IlvgD~~~Sv~ll~y~ 258 (478)
..+..|++++|.-.++. .|+++.+..+.+|.++..-..+|...-+-+.|+....+...|. .|+.+... =+++.|+
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr--ky~ysyD 286 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR--KYLYSYD 286 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccc--eEEEEee
Confidence 34556889998866652 2566778999999998633344666556667776666667776 66665544 4677788
Q ss_pred ccCceEEEEecCCCCc--eeEEEEee-cCCeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEE
Q 011732 259 EDARKLEQIYCDPSQR--LVADCVLM-DVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIR 331 (478)
Q Consensus 259 ~~~~~L~~varD~~~~--~vta~~~l-d~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~ 331 (478)
-+..++..+.+=+..- .+-..++- +...++.+=.+|-|++|.-- ..+.+..|.+...|+.+.
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak-----------T~eli~s~KieG~v~~~~ 351 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK-----------TKELITSFKIEGVVSDFT 351 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh-----------hhhhhheeeeccEEeeEE
Confidence 7777777665443322 22222221 33355555667777777532 233455555555555554
No 98
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=84.49 E-value=13 Score=36.37 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=44.3
Q ss_pred CceEEEEeCCeEEEEeeCCCCcccc-eeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEe
Q 011732 197 DRYFLASAGNAFYVCGFPNDNPQRV-RRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 197 g~~Ll~avg~~l~v~~l~~~~~~~L-~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~ 258 (478)
+.+|++|+.++|.+|+|..+..+ . +....+..+-.+.+|...++.|++|. .++..++..+
T Consensus 105 ~~~L~va~kk~i~i~~~~~~~~~-f~~~~ke~~lp~~~~~i~~~~~~i~v~~-~~~f~~idl~ 165 (275)
T PF00780_consen 105 SRRLCVAVKKKILIYEWNDPRNS-FSKLLKEISLPDPPSSIAFLGNKICVGT-SKGFYLIDLN 165 (275)
T ss_pred ceEEEEEECCEEEEEEEECCccc-ccceeEEEEcCCCcEEEEEeCCEEEEEe-CCceEEEecC
Confidence 35599999999999999874221 2 33344677788999999999999998 5556666554
No 99
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=84.21 E-value=34 Score=38.26 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=77.9
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECC-eeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-EQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~-~~~l~VGT~~~~g~~~~ 95 (478)
.|..|.-+.-.++.+|- . .++.+.++|-..........|+..+.+..+-=....+ ...++||-.
T Consensus 31 ~~~li~gss~~k~a~V~---~----~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~-------- 95 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVD---S----SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP-------- 95 (631)
T ss_pred CcceEeecccCcEEEEE---C----CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC--------
Confidence 56677666644444441 1 2679999999888877888888888887764333333 467888854
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
.+|++|.-.+ |.| . ..+|.- .
T Consensus 96 ---------~~v~l~~Q~R----------------------~dy------~---------~~~p~w-------------~ 116 (631)
T PF12234_consen 96 ---------HHVLLYTQLR----------------------YDY------T---------NKGPSW-------------A 116 (631)
T ss_pred ---------cEEEEEEccc----------------------hhh------h---------cCCccc-------------c
Confidence 2455554431 111 0 001210 1
Q ss_pred eEEEEEEEe-cCCceEEEeeeCCceEEEEeCCeEEEEeeC
Q 011732 176 QLRLAYSTT-WPGMVLAICPYLDRYFLASAGNAFYVCGFP 214 (478)
Q Consensus 176 ~l~l~~~~~-~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~ 214 (478)
.++-+.-.+ .+.||...+-.++++|++|.|+.++||+-.
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKW 156 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence 233333333 347899999999888999999999999643
No 100
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.97 E-value=55 Score=36.96 Aligned_cols=69 Identities=10% Similarity=0.009 Sum_probs=41.6
Q ss_pred cCCceEEEeeeCCceEEEEeCCe--EEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEE
Q 011732 185 WPGMVLAICPYLDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSY 257 (478)
Q Consensus 185 ~~G~V~ai~~~~g~~Ll~avg~~--l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y 257 (478)
.+.+|+...-.+|.-+++++++. +.+|++.. |.... --.+..-.+..+...++..+.|-.---+.+++.
T Consensus 148 Hkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~t---qhCf~-Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 148 HKDSITQALFLNGDSFLVSVSKDSMIKFWDLET---QHCFE-THVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred chHHHhHHhccCCCeEEEEeccCceEEEEeccc---ceeee-EEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 45566666656633388888655 78899875 32221 112334456666666777777666666667665
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=83.96 E-value=41 Score=32.21 Aligned_cols=81 Identities=21% Similarity=0.397 Sum_probs=50.6
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeee
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTS 87 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~ 87 (478)
.++.+..+..|+.++++|+.+.+++.... ...|+++|..+++.+..+. .++.+.++. + ..+..++++++.
T Consensus 23 ~~~~~~~~~~~~~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~--~~~~~~~~~-~-~~~g~~l~~~~~ 92 (300)
T TIGR03866 23 VTRTFPVGQRPRGITLSKDGKLLYVCASD------SDTIQVIDLATGEVIGTLP--SGPDPELFA-L-HPNGKILYIANE 92 (300)
T ss_pred eEEEEECCCCCCceEECCCCCEEEEEECC------CCeEEEEECCCCcEEEecc--CCCCccEEE-E-CCCCCEEEEEcC
Confidence 35667777788999999998865554331 3579999999988766543 333333322 1 123345554432
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
..|+|.+|++.
T Consensus 93 ---------------~~~~l~~~d~~ 103 (300)
T TIGR03866 93 ---------------DDNLVTVIDIE 103 (300)
T ss_pred ---------------CCCeEEEEECC
Confidence 13688999886
No 102
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.70 E-value=52 Score=33.36 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=91.4
Q ss_pred EEEEEEEecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEE
Q 011732 177 LRLAYSTTWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFY 255 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~-l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll 255 (478)
..++.....++-+..+.- .+.|..+|-++. |+++++...++- +...++++.-+.....+.||+.+|+|.-.++..+
T Consensus 77 ~~l~~~i~~~~l~~Dv~v-se~yvyvad~ssGL~IvDIS~P~sP--~~~~~lnt~gyaygv~vsGn~aYVadlddgfLiv 153 (370)
T COG5276 77 DVLLSVINARDLFADVRV-SEEYVYVADWSSGLRIVDISTPDSP--TLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIV 153 (370)
T ss_pred cceEEEEehhhhhheeEe-cccEEEEEcCCCceEEEeccCCCCc--ceeccccCCceEEEEEecCCEEEEeeccCcEEEE
Confidence 345555666666666553 455577777554 999999875443 3346777766788888899999999999988776
Q ss_pred EEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCCC
Q 011732 256 SYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDR 304 (478)
Q Consensus 256 ~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~~ 304 (478)
... ++.+=.+.+|=..+-|-+.-..+..+...+++.++.|.+++...+
T Consensus 154 dvs-dpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 154 DVS-DPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred ECC-CCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCC
Confidence 542 345566777877888877667788889999999999999998653
No 103
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.37 E-value=80 Score=35.06 Aligned_cols=191 Identities=11% Similarity=0.094 Sum_probs=122.9
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEE-CCeeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRV-GHEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l-~~~~~l~VGT~~~~g~~~~ 95 (478)
-.+.|-+||.-.-.+... +.+.|++++-.|..++.+|+.. |.+. ..++| .++.-+++|.-
T Consensus 15 RVKsVd~HPtePw~la~L-------ynG~V~IWnyetqtmVksfeV~--~~Pv--Ra~kfiaRknWiv~GsD-------- 75 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAAL-------YNGDVQIWNYETQTMVKSFEVS--EVPV--RAAKFIARKNWIVTGSD-------- 75 (794)
T ss_pred ceeeeecCCCCceEEEee-------ecCeeEEEecccceeeeeeeec--ccch--hhheeeeccceEEEecC--------
Confidence 356778888776544432 3478999999998888887654 3332 22222 46789999943
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
-++|-||+...
T Consensus 76 --------D~~IrVfnynt------------------------------------------------------------- 86 (794)
T KOG0276|consen 76 --------DMQIRVFNYNT------------------------------------------------------------- 86 (794)
T ss_pred --------CceEEEEeccc-------------------------------------------------------------
Confidence 46788888862
Q ss_pred eEEEEEEEe-cCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe---CCEEEEeecC
Q 011732 176 QLRLAYSTT-WPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH---FTRIAVGDCR 249 (478)
Q Consensus 176 ~l~l~~~~~-~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~---~n~IlvgD~~ 249 (478)
++.++..+ ...-+.+|+... .-|++.+. .-.|.+|+|++ .+.....|-...-|+.++... .|..+-+-+-
T Consensus 87 -~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~---~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 87 -GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN---EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred -ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC---ceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 22334333 346666666554 34455555 34579999997 322222344445578888764 4788888888
Q ss_pred CcEEEEEEeccCceEEEEecCCCCceeEEEEeecCC---eEEEeCCCCcEEEEecC
Q 011732 250 DGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD---TAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 250 ~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~---~~l~aD~~gNl~vl~~~ 302 (478)
+.|-+..+....-.+++- -+.+-|.++.+...+ .+|.+-.+.-+-+.+|.
T Consensus 163 rTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred ccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 999998886655566664 455667777776433 66666666677777774
No 104
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.28 E-value=32 Score=34.00 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=53.5
Q ss_pred eeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCC
Q 011732 79 EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSS 158 (478)
Q Consensus 79 ~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (478)
+.+|+|-|+-++| ....|||+++++..
T Consensus 21 ~nrLavAt~q~yG---------l~G~G~L~ile~~~-------------------------------------------- 47 (311)
T KOG0277|consen 21 ENRLAVATAQHYG---------LAGNGRLFILEVTD-------------------------------------------- 47 (311)
T ss_pred cchhheeehhhcc---------cccCceEEEEecCC--------------------------------------------
Confidence 5788999999887 34689999999961
Q ss_pred CCCCCcCCccccccccceEEEEEEEecCCceEEEeeeC---CceEEEEeCC-eEEEEeeCCC
Q 011732 159 PDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL---DRYFLASAGN-AFYVCGFPND 216 (478)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~---g~~Ll~avg~-~l~v~~l~~~ 216 (478)
...++.+.+.+...+++.|+--. +. +++|+|- .|.+|+....
T Consensus 48 ---------------~~gi~e~~s~d~~D~LfdV~Wse~~e~~-~~~a~GDGSLrl~d~~~~ 93 (311)
T KOG0277|consen 48 ---------------PKGIQECQSYDTEDGLFDVAWSENHENQ-VIAASGDGSLRLFDLTMP 93 (311)
T ss_pred ---------------CCCeEEEEeeecccceeEeeecCCCcce-EEEEecCceEEEeccCCC
Confidence 03678889999999999998554 45 7777764 4999997653
No 105
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=82.79 E-value=60 Score=33.26 Aligned_cols=49 Identities=24% Similarity=0.353 Sum_probs=31.9
Q ss_pred eEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
..|..+|+.|++++.++++... ...+. ... +..++||+. .|+++.|+..
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~~-~~~~p---~v~-~~~v~v~~~----------------~g~l~ald~~ 123 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDER-LSGGV---GAD-GGLVFVGTE----------------KGEVIALDAE 123 (377)
T ss_pred CeEEEEEccCCcEeeeecCCCC-cccce---EEc-CCEEEEEcC----------------CCEEEEEECC
Confidence 4688999999999999888753 11111 122 345556653 4677777764
No 106
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.67 E-value=14 Score=42.89 Aligned_cols=190 Identities=17% Similarity=0.085 Sum_probs=109.4
Q ss_pred EEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCcc
Q 011732 56 VLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQR 135 (478)
Q Consensus 56 ~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 135 (478)
+..+++.+++|..-.|+....+...--.|+++...|++..|..+....+++-.+..+...+| ++.+..|..+=|++.+
T Consensus 813 v~~s~~~~e~e~g~em~~~~~~~~~~~~v~~~p~a~~~w~s~I~~~d~~s~~~~~~~~l~~n--e~a~~v~~~~fs~~~~ 890 (1205)
T KOG1898|consen 813 VLESGEEKEDEMGGEMEIIGREEVLPENVYGSPRAGNGWVSSIRVFDPKSGKIICLVELGQN--EAAFSVCAVDFSSSEY 890 (1205)
T ss_pred ccccccccchhhccchhhhccccccccccccCcccccCccceEEEEcCCCCceEEEEeecCC--cchhheeeeeeccCCC
Confidence 44556777777777777776665555567888776655555556566666666666765442 3333333333332222
Q ss_pred CCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeCCce---EEEEeCCeEEEEe
Q 011732 136 TSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRY---FLASAGNAFYVCG 212 (478)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~---Ll~avg~~l~v~~ 212 (478)
. ++.++....+.- ..+ ....++.|+
T Consensus 891 ~---------------------------------------------------~~~~v~~~~~~~l~~~~~-~~g~~ytyk 918 (1205)
T KOG1898|consen 891 Q---------------------------------------------------PFVAVGVATTEQLDSKSI-SSGFVYTYK 918 (1205)
T ss_pred c---------------------------------------------------eEEEEEeecccccccccc-CCCceEEEE
Confidence 2 333333222110 111 444578887
Q ss_pred eCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCC-CceeEEEEeecCCeEEEeC
Q 011732 213 FPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPS-QRLVADCVLMDVDTAVVSD 291 (478)
Q Consensus 213 l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~-~~~vta~~~ld~~~~l~aD 291 (478)
+-..+. .|.-...+..+..+-.|...++++++|= =+ .++-|+-..++|.--++--. |..++.+.- ....++++|
T Consensus 919 ~~~~g~-~lellh~T~~~~~v~Ai~~f~~~~Lagv-G~--~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt-~~~RI~VgD 993 (1205)
T KOG1898|consen 919 FVRNGD-KLELLHKTEIPGPVGAICPFQGRVLAGV-GR--FLRLYDLGKKKLLRKCELKFIPNRISSIQT-YGARIVVGD 993 (1205)
T ss_pred EEecCc-eeeeeeccCCCccceEEeccCCEEEEec-cc--EEEEeeCChHHHHhhhhhccCceEEEEEee-cceEEEEee
Confidence 755332 2544444556678888888888888762 11 24445555555555554444 555555543 455899999
Q ss_pred CCCcEEEEecCCC
Q 011732 292 RKGSIAVLSCSDR 304 (478)
Q Consensus 292 ~~gNl~vl~~~~~ 304 (478)
..-.++.+.|.++
T Consensus 994 ~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 994 IQESVHFVRYRRE 1006 (1205)
T ss_pred ccceEEEEEEecC
Confidence 9999999998763
No 107
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.53 E-value=27 Score=37.34 Aligned_cols=118 Identities=10% Similarity=0.108 Sum_probs=73.7
Q ss_pred ecCCceEEEeeeCC-ceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccC
Q 011732 184 TWPGMVLAICPYLD-RYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA 261 (478)
Q Consensus 184 ~~~G~V~ai~~~~g-~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~ 261 (478)
...-.|+.++-..+ +||+.+. ..+|.+|+...+ ...++.+.-+....+.......+++|+.|..-.+|.+.... .
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~--~ 277 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR--T 277 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc--C
Confidence 34456777776664 5555554 566899999442 22244333223333444445568999999999999996544 3
Q ss_pred ceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCCCc
Q 011732 262 RKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDRL 305 (478)
Q Consensus 262 ~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~~~ 305 (478)
+++...-... .-.++++.|= |...++.++.+|.+.+++.....
T Consensus 278 ~~~~~~l~~h-s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 278 GECVRKLKGH-SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred CeEEEeeecc-CCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 4444332222 2267777764 45578888889999999976543
No 108
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.13 E-value=68 Score=32.70 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=38.9
Q ss_pred EeecCCcEEEEEEeccCceEEEEecCCC----------------CceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 245 VGDCRDGILFYSYHEDARKLEQIYCDPS----------------QRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 245 vgD~~~Sv~ll~y~~~~~~L~~varD~~----------------~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
|--+.+=-++++|.++...|..+.++-. +....++.|++.+.++++=.++++.+++.+
T Consensus 164 v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 164 VLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred eeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccC
Confidence 3334444455777777777877777633 333567778888877777777888888754
No 109
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=80.68 E-value=57 Score=34.82 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=73.0
Q ss_pred CCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccC-c
Q 011732 186 PGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA-R 262 (478)
Q Consensus 186 ~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~-~ 262 (478)
+--|+++.--. |..|+.|. +..+++|.... .++....+.+.|++..+=.-.|++|+.|++-+-..++.-.... .
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 34688887554 45355554 55678888765 3355566777776655555678999999999988886532111 1
Q ss_pred eEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 263 KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 263 ~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+-.+++.-+ ..+++-++++.|..++.+|-|++++...
T Consensus 312 q~f~~~s~~----~lDVdW~~~~~F~ts~td~~i~V~kv~~ 348 (524)
T KOG0273|consen 312 QQFEFHSAP----ALDVDWQSNDEFATSSTDGCIHVCKVGE 348 (524)
T ss_pred EeeeeccCC----ccceEEecCceEeecCCCceEEEEEecC
Confidence 111222111 2455667888999999999999999864
No 110
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=79.73 E-value=81 Score=32.73 Aligned_cols=64 Identities=13% Similarity=0.019 Sum_probs=36.2
Q ss_pred EEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 236 LTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 236 L~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
+.+.+++|++++.-..+..+ +..+++..- ..+....+..+.-.+.++.++++|.+|.|++++..
T Consensus 290 ~~~~~~~vy~~~~~g~l~al--d~~tG~~~W-~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 290 FAVDGGRIYLVDQNDRVYAL--DTRGGVELW-SQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINRE 353 (394)
T ss_pred cEEECCEEEEEcCCCeEEEE--ECCCCcEEE-cccccCCCcccCCEEECCEEEEEeCCCEEEEEECC
Confidence 45678899988866655444 444443221 11111111222222345688888999999998753
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.67 E-value=10 Score=42.42 Aligned_cols=114 Identities=21% Similarity=0.293 Sum_probs=73.4
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECC-e-eEEEEeeecCCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-E-QVLVVGTSLSSGPA 93 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~-~-~~l~VGT~~~~g~~ 93 (478)
++.+++.+|+...-+++..++ -++|+++|-..-.-..++.= ..| |+.-|.|.- . .+++-+
T Consensus 134 Rs~~~ldfh~tep~iliSGSQ------Dg~vK~~DlR~~~S~~t~~~-nSE---SiRDV~fsp~~~~~F~s~-------- 195 (839)
T KOG0269|consen 134 RSANKLDFHSTEPNILISGSQ------DGTVKCWDLRSKKSKSTFRS-NSE---SIRDVKFSPGYGNKFASI-------- 195 (839)
T ss_pred cceeeeeeccCCccEEEecCC------CceEEEEeeecccccccccc-cch---hhhceeeccCCCceEEEe--------
Confidence 478999999998888888763 37999999876554444322 333 344444432 1 222211
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
--.|-+.+|++.. |+.
T Consensus 196 --------~dsG~lqlWDlRq--------------------------------------------p~r------------ 211 (839)
T KOG0269|consen 196 --------HDSGYLQLWDLRQ--------------------------------------------PDR------------ 211 (839)
T ss_pred --------cCCceEEEeeccC--------------------------------------------chh------------
Confidence 1379999999983 342
Q ss_pred cceEEEEEEEecCCceEEEeeeCCceEEEEeCC--eEEEEeeCC
Q 011732 174 TWQLRLAYSTTWPGMVLAICPYLDRYFLASAGN--AFYVCGFPN 215 (478)
Q Consensus 174 ~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~--~l~v~~l~~ 215 (478)
+.+++ .-.+|||+++.--.++-+++.-|. ++.+|+|..
T Consensus 212 -~~~k~---~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 212 -CEKKL---TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred -HHHHh---hcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 33333 347899999997777634454443 389999985
No 112
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=79.56 E-value=63 Score=31.38 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=33.4
Q ss_pred EEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCC
Q 011732 178 RLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPND 216 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~ 216 (478)
+.+.+..+++++++|+-+++. |++|..+...++++...
T Consensus 130 ~~~ke~~lp~~~~~i~~~~~~-i~v~~~~~f~~idl~~~ 167 (275)
T PF00780_consen 130 KLLKEISLPDPPSSIAFLGNK-ICVGTSKGFYLIDLNTG 167 (275)
T ss_pred ceeEEEEcCCCcEEEEEeCCE-EEEEeCCceEEEecCCC
Confidence 677788899999999999777 99999999999999853
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=79.56 E-value=17 Score=37.50 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=72.3
Q ss_pred EEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEE--EeCCEEEEee-cCCcEEEE
Q 011732 179 LAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGD-CRDGILFY 255 (478)
Q Consensus 179 l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~--~~~n~IlvgD-~~~Sv~ll 255 (478)
.++...-++.++.|......-+.+..|..|.+|+...++. ++...| .++. |.+++ .....|+++. ..+|+.||
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~P--v~smsw-G~Dt-i~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNP--VSSMSW-GADS-ISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred cceeeeccccccccccccccccccccCceeeecccccCCc--cceeec-CCCc-eeEEecCCCcchheeeeccCCceEEE
Confidence 5667777788888887765447888999999999987543 343333 2222 44444 3445555554 67799998
Q ss_pred EEeccC--ceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEec
Q 011732 256 SYHEDA--RKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 256 ~y~~~~--~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~ 301 (478)
.-+... .++++--|-..-.|-- ....|.+++.+.||+.|+.
T Consensus 216 D~R~~~Pl~KVi~~mRTN~IswnP-----eafnF~~a~ED~nlY~~Dm 258 (433)
T KOG0268|consen 216 DLRQASPLKKVILTMRTNTICWNP-----EAFNFVAANEDHNLYTYDM 258 (433)
T ss_pred ecccCCccceeeeeccccceecCc-----cccceeeccccccceehhh
Confidence 665432 3444444443333321 2237899999999999875
No 114
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.31 E-value=9 Score=39.94 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=52.4
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
..|-++++|..+-+++..+- ...|+++|-.|-.++.+|... -.++| +.|-++...||-.|-.
T Consensus 195 ~IrdlafSp~~~GLl~~asl------~nkiki~dlet~~~vssy~a~--~~~wS-C~wDlde~h~IYaGl~--------- 256 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLGLASL------GNKIKIMDLETSCVVSSYIAY--NQIWS-CCWDLDERHVIYAGLQ--------- 256 (463)
T ss_pred hhhhhccCccccceeeeecc------CceEEEEecccceeeeheecc--CCcee-eeeccCCcceeEEecc---------
Confidence 46677777777744444332 347999999998888888776 44555 3566666788887844
Q ss_pred CCCCcCcceEEEEEEEEe
Q 011732 97 SGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~ 114 (478)
.|-+|+|++..
T Consensus 257 -------nG~VlvyD~R~ 267 (463)
T KOG1645|consen 257 -------NGMVLVYDMRQ 267 (463)
T ss_pred -------CceEEEEEccC
Confidence 78999999983
No 115
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=79.05 E-value=57 Score=32.90 Aligned_cols=116 Identities=14% Similarity=0.098 Sum_probs=76.1
Q ss_pred EEecCCceEEEeeeCC------ceEEEEeCCeEEEEeeCCCCcccceeeeec------ccceeEEEEEE---eCCEEEEe
Q 011732 182 STTWPGMVLAICPYLD------RYFLASAGNAFYVCGFPNDNPQRVRRFAVG------RTRFMIMLLTA---HFTRIAVG 246 (478)
Q Consensus 182 ~~~~~G~V~ai~~~~g------~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~------~~~~~i~sL~~---~~n~Ilvg 246 (478)
.++++-|++.+--..+ . |++..|..|++|+...++++ +...+.. ..+..++|.+- .-++|.+.
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pd-lLATs~D~LRlWri~~ee~~-~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPD-LLATSSDFLRLWRIGDEESR-VELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCCCccceEecCCccccCcc-hhhcccCeEEEEeccCcCCc-eehhhhhccCcccccCCcccccccccCCcceeEee
Confidence 3577777777765542 3 78999999999999865443 2221211 22335566543 34888888
Q ss_pred ecCCcEEEEEEeccC---ceEEEEecCCCCceeEEEEeecC--CeEEEeCCCCcEEEEecC
Q 011732 247 DCRDGILFYSYHEDA---RKLEQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 247 D~~~Sv~ll~y~~~~---~~L~~varD~~~~~vta~~~ld~--~~~l~aD~~gNl~vl~~~ 302 (478)
-+-.-.+++...... -+-.++|-| ..|..+.|+.. +.|...-++|.+.+|+.-
T Consensus 170 SiDTTCTiWdie~~~~~~vkTQLIAHD---KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGTVKTQLIAHD---KEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred cccCeEEEEEEeeccccceeeEEEecC---cceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 888888876554431 155678877 56788888764 356666788999998854
No 116
>PHA02713 hypothetical protein; Provisional
Probab=79.01 E-value=1e+02 Score=33.91 Aligned_cols=81 Identities=11% Similarity=-0.012 Sum_probs=49.7
Q ss_pred eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEE-eecCC---------------------cEEEEEEeccCceE
Q 011732 207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRD---------------------GILFYSYHEDARKL 264 (478)
Q Consensus 207 ~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Ilv-gD~~~---------------------Sv~ll~y~~~~~~L 264 (478)
.+..|+...+ .+..++.+..+..-....+.+++|+| |-... .-.+..|+++.++-
T Consensus 368 sve~Ydp~~~---~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W 444 (557)
T PHA02713 368 TIECYTMGDD---KWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW 444 (557)
T ss_pred eEEEEECCCC---eEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence 4778887652 24444443333333445567888865 43211 22467899999988
Q ss_pred EEEecCCCCceeEEEEeecCCeEEEe
Q 011732 265 EQIYCDPSQRLVADCVLMDVDTAVVS 290 (478)
Q Consensus 265 ~~varD~~~~~vta~~~ld~~~~l~a 290 (478)
..++.=+.+|.-.++..+++.-++.+
T Consensus 445 ~~v~~m~~~r~~~~~~~~~~~IYv~G 470 (557)
T PHA02713 445 ETLPNFWTGTIRPGVVSHKDDIYVVC 470 (557)
T ss_pred eecCCCCcccccCcEEEECCEEEEEe
Confidence 88886666666666667777645544
No 117
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=78.87 E-value=82 Score=34.13 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=41.2
Q ss_pred eeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEe
Q 011732 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~ 114 (478)
..+|=|++..++++....++. .+.++|+... .+..+|+|||. .|.+.+|++.+
T Consensus 196 g~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws--~~G~~LavG~~----------------~g~v~iwD~~~ 248 (484)
T KOG0305|consen 196 GQSVYLWSASSGSVTELCSFG-EELVTSVKWS--PDGSHLAVGTS----------------DGTVQIWDVKE 248 (484)
T ss_pred cceEEEEecCCCceEEeEecC-CCceEEEEEC--CCCCEEEEeec----------------CCeEEEEehhh
Confidence 457889999999887777877 6777765432 23489999987 68999999984
No 118
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.33 E-value=36 Score=34.59 Aligned_cols=85 Identities=14% Similarity=0.085 Sum_probs=61.0
Q ss_pred EeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCC
Q 011732 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG 91 (478)
Q Consensus 12 i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g 91 (478)
|||..-.+-++.||.....++..-++ ...+.+||+.+++.+..+.=+++.+-.-=.+..-+++ +|.. |
T Consensus 1 ~~lP~RgH~~a~~p~~~~avafaRRP-----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~-~Lyt-T----- 68 (305)
T PF07433_consen 1 IPLPARGHGVAAHPTRPEAVAFARRP-----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR-LLYT-T----- 68 (305)
T ss_pred CCCCccccceeeCCCCCeEEEEEeCC-----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC-EEEE-e-----
Confidence 57777889999999888777666544 3478889999999998888888877664433333343 3332 1
Q ss_pred CCCCCCCCCcCcceEEEEEEEE
Q 011732 92 PAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
+++-+..+|+|=||++.
T Consensus 69 -----End~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 69 -----ENDYETGRGVIGVYDAA 85 (305)
T ss_pred -----ccccCCCcEEEEEEECc
Confidence 23557789999999997
No 119
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=78.13 E-value=21 Score=30.78 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=44.5
Q ss_pred eEEEEeecC-----CeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEEeeeeeccCCCCCccccccc
Q 011732 276 VADCVLMDV-----DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLA 350 (478)
Q Consensus 276 vta~~~ld~-----~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~~gsl~~~~~~~~~~~~~~~ 350 (478)
|+|+.+.|- +.++++-.+..|.+|+-.. ...++...+.|+++.. +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------~~~Ei~e~~~v~~L~~--~--------------- 51 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------IVAEITETDKVTSLCS--L--------------- 51 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------EEEEEecccceEEEEE--c---------------
Confidence 556655442 2677888888999998432 4556666777777753 1
Q ss_pred cCCCCCcEEEEEeCCCceEEEEe
Q 011732 351 SFESSQTTIIASTLLGSIVIFIP 373 (478)
Q Consensus 351 ~~~~~~~~il~~T~~GsIg~i~p 373 (478)
....+.|+..+|+||+.-.
T Consensus 52 ----~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 52 ----GGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ----CCCEEEEEecCCEEEEEeC
Confidence 2356999999999999854
No 120
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.99 E-value=1e+02 Score=33.01 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=30.6
Q ss_pred ceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CCEEEEeecCCcEEEEEEecc
Q 011732 188 MVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVGDCRDGILFYSYHED 260 (478)
Q Consensus 188 ~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n~IlvgD~~~Sv~ll~y~~~ 260 (478)
.+..|-. |..|.+..+..|.+|+|+. .+.++ .++.+- +..+... +++|++.. -+++++++|+.+
T Consensus 110 ~~~~If~--G~LL~~~~~~~i~~yDw~~--~~~i~---~i~v~~-vk~V~Ws~~g~~val~t-~~~i~il~~~~~ 175 (443)
T PF04053_consen 110 SVEKIFG--GNLLGVKSSDFICFYDWET--GKLIR---RIDVSA-VKYVIWSDDGELVALVT-KDSIYILKYNLE 175 (443)
T ss_dssp -EEEEE---SSSEEEEETTEEEEE-TTT----EEE---EESS-E--EEEEE-TTSSEEEEE--S-SEEEEEE-HH
T ss_pred ccceEEc--CcEEEEECCCCEEEEEhhH--cceee---EEecCC-CcEEEEECCCCEEEEEe-CCeEEEEEecch
Confidence 3444443 7645555555599999986 23233 333332 3444433 45665553 568888888755
No 121
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.92 E-value=33 Score=34.11 Aligned_cols=68 Identities=25% Similarity=0.437 Sum_probs=49.1
Q ss_pred CEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCC
Q 011732 19 KKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSG 98 (478)
Q Consensus 19 ~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~ 98 (478)
.-+..-++++.++++.+.. ..+.-+|+.++++++.-.|... +.|-+.+ . ..|+++|+-
T Consensus 14 spLVV~~dskT~v~igSHs------~~~~avd~~sG~~~We~ilg~R--iE~sa~v-v--gdfVV~GCy----------- 71 (354)
T KOG4649|consen 14 SPLVVCNDSKTLVVIGSHS------GIVIAVDPQSGNLIWEAILGVR--IECSAIV-V--GDFVVLGCY----------- 71 (354)
T ss_pred CcEEEecCCceEEEEecCC------ceEEEecCCCCcEEeehhhCce--eeeeeEE-E--CCEEEEEEc-----------
Confidence 3456678889999988743 4688899999999887776643 3332222 1 356999986
Q ss_pred CCcCcceEEEEEEEE
Q 011732 99 EAESTKGRLIVLCIE 113 (478)
Q Consensus 99 e~~~~~Gri~v~~i~ 113 (478)
+|.+|+++++
T Consensus 72 -----~g~lYfl~~~ 81 (354)
T KOG4649|consen 72 -----SGGLYFLCVK 81 (354)
T ss_pred -----cCcEEEEEec
Confidence 6889999997
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=77.81 E-value=58 Score=35.25 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=56.3
Q ss_pred ceEEEe-eeCCceEEEEeC--CeEEEEeeCCCCcccceeeeecccceeE--EEEEEeCCEEEEeec----CCcEEEEEEe
Q 011732 188 MVLAIC-PYLDRYFLASAG--NAFYVCGFPNDNPQRVRRFAVGRTRFMI--MLLTAHFTRIAVGDC----RDGILFYSYH 258 (478)
Q Consensus 188 ~V~ai~-~~~g~~Ll~avg--~~l~v~~l~~~~~~~L~~~a~~~~~~~i--~sL~~~~n~IlvgD~----~~Sv~ll~y~ 258 (478)
-+++|. ++.|+ .|++-| ..|.||++++.++-+..... .-+++.- ...+....+|+.|.. +..=.|+-|+
T Consensus 366 ~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kkpL~~~tg-L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 366 DITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKKPLNVRTG-LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred ceeEEEeccccc-hhhhccCCCceeeeeccccccchhhhcC-CCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 577776 44577 455544 45999999985432222111 1111111 111233456666654 2222444454
Q ss_pred ccCceEEEEecC-CCCceeEEEEee-cCCeEEEeCCCCcEEEEec
Q 011732 259 EDARKLEQIYCD-PSQRLVADCVLM-DVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 259 ~~~~~L~~varD-~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~ 301 (478)
. .+|..+.+= +....|..|.-- --+.++++-.+|++++|--
T Consensus 444 ~--~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 444 R--MTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred c--cceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 3 455655553 333334444321 1246888888899999853
No 123
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=77.40 E-value=85 Score=31.71 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=75.6
Q ss_pred eEEEEEEEecC---CceEEEeeeCC-ceEEEE-eCCeEEEEeeCCCCcccceeeeecccce---eEEEEEEeCCEEEEee
Q 011732 176 QLRLAYSTTWP---GMVLAICPYLD-RYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRF---MIMLLTAHFTRIAVGD 247 (478)
Q Consensus 176 ~l~l~~~~~~~---G~V~ai~~~~g-~~Ll~a-vg~~l~v~~l~~~~~~~L~~~a~~~~~~---~i~sL~~~~n~IlvgD 247 (478)
+++.-....++ +.|+++.--.+ ++||-| ...+|.||+--..++ +..+.+++ +.......+++|.+|-
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-----~haipl~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-----VHAIPLPSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc-----eeEEecCceeEEEEEECCCCCeEEecC
Confidence 45555555555 46788876554 545544 367799997654322 12222222 4445566799999998
Q ss_pred cCCcEEEEEEecc-CceEEEEecCC--CCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 248 CRDGILFYSYHED-ARKLEQIYCDP--SQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 248 ~~~Sv~ll~y~~~-~~~L~~varD~--~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
+-.=.++|..... ..-...++|.. +.-++.+|.|+|++.+|.+--+.-....+..
T Consensus 117 LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIE 174 (343)
T ss_pred cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcc
Confidence 8776666665422 22234444442 3556889999998889988777766666654
No 124
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=77.28 E-value=30 Score=35.31 Aligned_cols=115 Identities=18% Similarity=0.124 Sum_probs=66.0
Q ss_pred cCCceEEEeeeCCc--eEEEEe-CCeEEEEeeCCCCcccceeee-ecccceeEEEEE--EeCCEEEEeecCCcEEEEEEe
Q 011732 185 WPGMVLAICPYLDR--YFLASA-GNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 185 ~~G~V~ai~~~~g~--~Ll~av-g~~l~v~~l~~~~~~~L~~~a-~~~~~~~i~sL~--~~~n~IlvgD~~~Sv~ll~y~ 258 (478)
+-++|..|.....+ +|+.|. ...|.+|.++.+-- +--.+ .....-.|.|++ ..+++|+-+-+-+|+.+.+.+
T Consensus 134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 45566666666543 455554 56699999987411 11111 111122455555 458999999999999998876
Q ss_pred --ccCceEEEE-----------------------ecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 259 --EDARKLEQI-----------------------YCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 259 --~~~~~L~~v-----------------------arD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+-.++++.. .+|.+...|-++.++. .++.+=.-+|-.++++|.
T Consensus 212 ~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 212 VKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENAIVCWKPG 279 (385)
T ss_pred hhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecccCceEEEEecc
Confidence 222333322 3333333333333322 567777788888888874
No 125
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.18 E-value=90 Score=31.85 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=75.3
Q ss_pred CceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCce
Q 011732 197 DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRL 275 (478)
Q Consensus 197 g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~ 275 (478)
|.++++.+-++|-+|.++. ...++.+ ..+..+.++... ++.++||---.-+.++ +.+. .....-=+.++..
T Consensus 180 Gd~F~v~~~~~i~i~q~d~--A~v~~~i---~~~~r~l~~~~l~~~~L~vG~d~~~i~~~--D~ds-~~~~~~~~AH~~R 251 (362)
T KOG0294|consen 180 GDHFVVSGRNKIDIYQLDN--ASVFREI---ENPKRILCATFLDGSELLVGGDNEWISLK--DTDS-DTPLTEFLAHENR 251 (362)
T ss_pred CCEEEEEeccEEEEEeccc--HhHhhhh---hccccceeeeecCCceEEEecCCceEEEe--ccCC-Cccceeeecchhh
Confidence 5558888889999999986 3333322 233334444433 6777777444444443 3332 1222223455666
Q ss_pred eEEEEeecC---CeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEEe
Q 011732 276 VADCVLMDV---DTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRK 332 (478)
Q Consensus 276 vta~~~ld~---~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~~ 332 (478)
|-++.+++. ..++.+-.+|-|.+........ .+-...+++.+|..+|+++.
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k------~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK------KRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred eeeeEEEecCCceEEEEeccCceEEEEEcccccc------CCcceeEEeecCCccceeee
Confidence 777775544 2566667799999998865321 24557889999999999975
No 126
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=77.14 E-value=45 Score=32.68 Aligned_cols=114 Identities=12% Similarity=0.136 Sum_probs=64.3
Q ss_pred EEEEeCCe-EEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEec---cCceEEEEecCCCCce
Q 011732 200 FLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE---DARKLEQIYCDPSQRL 275 (478)
Q Consensus 200 Ll~avg~~-l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~---~~~~L~~varD~~~~~ 275 (478)
+..+-|-+ +++|+... .+.+++..-...+.-++...-.-..|+-|-+-.|+-++.-+. ++-+...-|+| .
T Consensus 74 f~s~GgDk~v~vwDV~T--Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D----~ 147 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNT--GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD----G 147 (307)
T ss_pred cccCCCCceEEEEEccc--CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC----c
Confidence 43333333 77887764 344555433333333333333345666666667777764432 22222223444 3
Q ss_pred eEEEEeecCCeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEEe
Q 011732 276 VADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRK 332 (478)
Q Consensus 276 vta~~~ld~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~~ 332 (478)
|+++. +.+..++++-.+|++.+|..-. -....=++|+.||++..
T Consensus 148 V~Si~-v~~heIvaGS~DGtvRtydiR~------------G~l~sDy~g~pit~vs~ 191 (307)
T KOG0316|consen 148 VSSID-VAEHEIVAGSVDGTVRTYDIRK------------GTLSSDYFGHPITSVSF 191 (307)
T ss_pred eeEEE-ecccEEEeeccCCcEEEEEeec------------ceeehhhcCCcceeEEe
Confidence 44443 4566899999999999998632 22333367999999854
No 127
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=76.80 E-value=61 Score=33.91 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=23.3
Q ss_pred eEEEEeecCCeEEEeCCCCcEEEEecCCC
Q 011732 276 VADCVLMDVDTAVVSDRKGSIAVLSCSDR 304 (478)
Q Consensus 276 vta~~~ld~~~~l~aD~~gNl~vl~~~~~ 304 (478)
+-+|.|+++-.++.+-.+-||++++.|-.
T Consensus 296 ~KS~~F~~D~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 296 IKSMTFIDDYTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred eeeeeeecceeeeccCcccceEEEecCCC
Confidence 45778888878888888889999998653
No 128
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=76.22 E-value=49 Score=33.85 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=36.3
Q ss_pred EEEEEeCCCCcEEEEEEC-CCCCceEEEEEEEECC-eeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEe
Q 011732 45 DICCVDPLSGSVLSSFKL-ELGETGKSMELVRVGH-EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 45 ~l~l~d~~t~~~i~~~~l-~~~E~~~s~~~~~l~~-~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~ 114 (478)
-|+++|..|++.-.+|.. +.-+.++...++.|.. -++|..|= +-.|.+|++.+
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-----------------krcirvFdt~R 188 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-----------------KRCIRVFDTSR 188 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-----------------cceEEEeeccC
Confidence 499999999998887643 3345666666666653 46666662 33678888863
No 129
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=75.98 E-value=10 Score=36.41 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=46.3
Q ss_pred EEEEEEEecCCceEEE--eeeCCceEEEEeCCeEEEEeeCCCCc--ccceeeee------cccceeEEEEEEeCCEEEEe
Q 011732 177 LRLAYSTTWPGMVLAI--CPYLDRYFLASAGNAFYVCGFPNDNP--QRVRRFAV------GRTRFMIMLLTAHFTRIAVG 246 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai--~~~~g~~Ll~avg~~l~v~~l~~~~~--~~L~~~a~------~~~~~~i~sL~~~~n~Ilvg 246 (478)
++.+ +.+++-++.+| |+..|. |++|.++++.+|.+..... ..+.-..| ....+.++.+..++++|++-
T Consensus 126 leii-ElPl~~~p~ciaCC~~tG~-LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~ 203 (215)
T PF14761_consen 126 LEII-ELPLSEPPLCIACCPVTGN-LLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAVM 203 (215)
T ss_pred eEEE-EecCCCCCCEEEecCCCCC-EEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEEe
Confidence 4444 46677666555 566799 9999999999999875211 11121122 12355688888999999876
Q ss_pred ecCC
Q 011732 247 DCRD 250 (478)
Q Consensus 247 D~~~ 250 (478)
+-..
T Consensus 204 s~~e 207 (215)
T PF14761_consen 204 SDLE 207 (215)
T ss_pred cCCE
Confidence 5443
No 130
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=75.74 E-value=1.3e+02 Score=33.08 Aligned_cols=110 Identities=9% Similarity=0.029 Sum_probs=71.2
Q ss_pred cCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCce
Q 011732 185 WPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK 263 (478)
Q Consensus 185 ~~G~V~ai~~~~g~~Ll~a-vg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~ 263 (478)
..+.|++|...+.. ++-| --++|.||.++. .+.|.-..- ....|.++...+++++.|..-.+|-++.+. ...-
T Consensus 290 h~stv~~~~~~~~~-~~sgs~D~tVkVW~v~n--~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~-~~~c 363 (537)
T KOG0274|consen 290 HTSSVRCLTIDPFL-LVSGSRDNTVKVWDVTN--GACLNLLRG--HTGPVNCVQLDEPLLVSGSYDGTVKVWDPR-TGKC 363 (537)
T ss_pred CCceEEEEEccCce-EeeccCCceEEEEeccC--cceEEEecc--ccccEEEEEecCCEEEEEecCceEEEEEhh-hcee
Confidence 56778887776544 4332 567799999986 343443221 344677777779999999888877776544 2222
Q ss_pred EEEEecCCCCceeEEEEeecC-CeEEEeCCCCcEEEEecCC
Q 011732 264 LEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 264 L~~varD~~~~~vta~~~ld~-~~~l~aD~~gNl~vl~~~~ 303 (478)
|..+.. +..+|++..+ +. +.++-+-.++-|.+..+..
T Consensus 364 l~sl~g--H~~~V~sl~~-~~~~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 364 LKSLSG--HTGRVYSLIV-DSENRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred eeeecC--CcceEEEEEe-cCcceEEeeeeccceEeecCCc
Confidence 333333 7778888854 55 6777777778888877654
No 131
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=75.70 E-value=46 Score=35.84 Aligned_cols=81 Identities=11% Similarity=0.161 Sum_probs=51.8
Q ss_pred EEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCC
Q 011732 11 KFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSS 90 (478)
Q Consensus 11 ~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~ 90 (478)
+++-|...|.+-|||..+.+.+..++. +.|.|+|-.....+..+ .+-+.+-|-.++.-.-.+.|+|..++..
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~------G~VtlwDv~g~sp~~~~--~~~HsAP~~gicfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDK------GAVTLWDVQGMSPIFHA--SEAHSAPCRGICFSPSNEALLVSVGYDK 231 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccC------CeEEEEeccCCCcccch--hhhccCCcCcceecCCccceEEEecccc
Confidence 445556778999999988888877644 58999998766654332 2222222222332234577777777633
Q ss_pred CCCCCCCCCCcCcceEEEEEEEEe
Q 011732 91 GPAIMPSGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 91 g~~~~~~~e~~~~~Gri~v~~i~~ 114 (478)
+|++|++..
T Consensus 232 ---------------ki~~yD~~s 240 (673)
T KOG4378|consen 232 ---------------KINIYDIRS 240 (673)
T ss_pred ---------------eEEEeeccc
Confidence 899999973
No 132
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=75.05 E-value=29 Score=38.20 Aligned_cols=98 Identities=22% Similarity=0.376 Sum_probs=75.7
Q ss_pred eeEEEeCCC--CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEe--CCCCcEEEEEECCCCCceEEEEEEEECCe-eEE
Q 011732 8 NVRKFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVD--PLSGSVLSSFKLELGETGKSMELVRVGHE-QVL 82 (478)
Q Consensus 8 ~ir~i~L~~--tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d--~~t~~~i~~~~l~~~E~~~s~~~~~l~~~-~~l 82 (478)
..|++.+.+ .|.-|+|+|..++.+|+.. ..+.|.+|. +.++.-|..+.|+.+|.+..++. +.++ =.|
T Consensus 329 ~trKV~IPGILvPDliAfn~kaq~VAVASN------Tcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCF--ltdklLLi 400 (671)
T PF15390_consen 329 TTRKVSIPGILVPDLIAFNPKAQVVAVASN------TCNIILVYSVTPSSMPNIQQIQLESNERPKGICF--LTDKLLLI 400 (671)
T ss_pred EeeeeccccccccceeeeCCcCCEEEEEec------CCcEEEEEEeccccCCCeeEEEcccCCCCceeeE--ccCCeEEE
Confidence 468888888 9999999999999999853 134566665 45677889999999999997755 4554 577
Q ss_pred EEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 83 ~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
+||--....+++.|..+...-.=|+.+.++.
T Consensus 401 lVGkqK~td~aFLPSS~sd~Y~irL~vkEv~ 431 (671)
T PF15390_consen 401 LVGKQKSTDPAFLPSSKSDKYIIRLMVKEVM 431 (671)
T ss_pred EeccccCCCcccCCCCccccEEEEEEEEEee
Confidence 8898887778888877666666677777776
No 133
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=74.32 E-value=1.1e+02 Score=31.70 Aligned_cols=72 Identities=18% Similarity=0.367 Sum_probs=46.8
Q ss_pred CeeeEEEeCCCCcCE-EEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEE
Q 011732 6 RLNVRKFHLGGTPKK-VLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVV 84 (478)
Q Consensus 6 ~l~ir~i~L~~tp~k-i~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~V 84 (478)
.-.+++|+.+..++. +++.|+.+.+.|+. . .+.|.++|..+.+++.++.. +..+.++.+- .+..|++|
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~--r-----dg~vsviD~~~~~~v~~i~~--G~~~~~i~~s--~DG~~~~v 94 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVAN--R-----DGTVSVIDLATGKVVATIKV--GGNPRGIAVS--PDGKYVYV 94 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEE--T-----TSEEEEEETTSSSEEEEEE---SSEEEEEEE----TTTEEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEc--C-----CCeEEEEECCcccEEEEEec--CCCcceEEEc--CCCCEEEE
Confidence 345789999887654 56789888777763 1 24799999999999998865 4455554332 35578888
Q ss_pred eeec
Q 011732 85 GTSL 88 (478)
Q Consensus 85 GT~~ 88 (478)
+...
T Consensus 95 ~n~~ 98 (369)
T PF02239_consen 95 ANYE 98 (369)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8764
No 134
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=74.29 E-value=1.3e+02 Score=32.48 Aligned_cols=96 Identities=13% Similarity=0.166 Sum_probs=63.0
Q ss_pred EEEEEecCCceEEEeeeCCceEEEEeC--CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEE
Q 011732 179 LAYSTTWPGMVLAICPYLDRYFLASAG--NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYS 256 (478)
Q Consensus 179 l~~~~~~~G~V~ai~~~~g~~Ll~avg--~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~ 256 (478)
-.|+-+..|.+ +++.+.. |++++| .+|++|+... +.+...-.++.|+..+...-+|-++++|...--+.+|.
T Consensus 205 ~~HsAP~~gic--fspsne~-l~vsVG~Dkki~~yD~~s---~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 205 EAHSAPCRGIC--FSPSNEA-LLVSVGYDKKINIYDIRS---QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred hhccCCcCcce--ecCCccc-eEEEecccceEEEeeccc---ccccceeeecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 34444444443 3466667 888886 6689999885 55666557789998888888888988998888888776
Q ss_pred EeccCceEEEEecCCCCceeEEEEee
Q 011732 257 YHEDARKLEQIYCDPSQRLVADCVLM 282 (478)
Q Consensus 257 y~~~~~~L~~varD~~~~~vta~~~l 282 (478)
.+..+.-+..+ ......|+++.|.
T Consensus 279 ~R~~k~Pv~v~--sah~~sVt~vafq 302 (673)
T KOG4378|consen 279 MRSTKAPVAVR--SAHDASVTRVAFQ 302 (673)
T ss_pred cccCCCCceEe--eecccceeEEEee
Confidence 65443333322 1222236666653
No 135
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=73.34 E-value=12 Score=40.87 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=47.7
Q ss_pred EEEEecCCceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceeeee---cccceeEEEEEEe-CCEEEEee
Q 011732 180 AYSTTWPGMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAV---GRTRFMIMLLTAH-FTRIAVGD 247 (478)
Q Consensus 180 ~~~~~~~G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~---~~~~~~i~sL~~~-~n~IlvgD 247 (478)
.......|-|+|-|.-+ |..|++|+|+.|+-|-|+..++ .|..+.| ++...+|-+|..- +..|+|++
T Consensus 149 kaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK-tL~~CsfcPVFdv~~~Icsi~AT~dsqVAvaT 220 (671)
T PF15390_consen 149 KADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK-TLHRCSFCPVFDVGGYICSIEATVDSQVAVAT 220 (671)
T ss_pred EEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh-hhhhCCcceeecCCCceEEEEEeccceEEEEe
Confidence 34456778899888766 4339999999999999987543 4776554 4667788888753 45555553
No 136
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=71.31 E-value=30 Score=35.76 Aligned_cols=163 Identities=11% Similarity=0.084 Sum_probs=92.6
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
..|-+++|++..+|+|++.+. .|+++|.++ +.....+-..--.++|++-=.+ ...-|+||
T Consensus 100 dlr~~aWhqH~~~fava~ndd-------vVriy~kss-t~pt~Lks~sQrnvtclawRPl-saselavg----------- 159 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDD-------VVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL-SASELAVG----------- 159 (445)
T ss_pred ceeeEeechhhhhhhhhccCc-------EEEEeccCC-CCCceecchhhcceeEEEeccC-Ccceeeee-----------
Confidence 457899999999999997533 689999876 3333333333345566543222 33477888
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
|++-|.+|..+..-|.. +.+.......
T Consensus 160 ------Cr~gIciW~~s~tln~~-----------------------------------------------r~~~~~s~~~ 186 (445)
T KOG2139|consen 160 ------CRAGICIWSDSRTLNAN-----------------------------------------------RNIRMMSTHH 186 (445)
T ss_pred ------ecceeEEEEcCcccccc-----------------------------------------------cccccccccc
Confidence 45678899887421100 0000000123
Q ss_pred EEEEEEEecCCceEEEeeeCCceEEE-E-eC-CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEE
Q 011732 177 LRLAYSTTWPGMVLAICPYLDRYFLA-S-AG-NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGIL 253 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~g~~Ll~-a-vg-~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ 253 (478)
++++. .+-.-+|++|.--+++..++ | .| +.+++|+.+.....-|++.. -..+.-..-+..+++++++..-..+.
T Consensus 187 ~qvl~-~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--lgg~slLkwSPdgd~lfaAt~davfr 263 (445)
T KOG2139|consen 187 LQVLQ-DPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--LGGFSLLKWSPDGDVLFAATCDAVFR 263 (445)
T ss_pred hhhee-CCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC--CCceeeEEEcCCCCEEEEecccceee
Confidence 33332 34446889988766543333 3 24 44899998864333344221 12222334455688998887777666
Q ss_pred EE
Q 011732 254 FY 255 (478)
Q Consensus 254 ll 255 (478)
+.
T Consensus 264 lw 265 (445)
T KOG2139|consen 264 LW 265 (445)
T ss_pred ee
Confidence 65
No 137
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=70.38 E-value=1.6e+02 Score=31.73 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=30.1
Q ss_pred EEEecCCCeEEEEEEee-----------CCCcceeEEEEEeCCCCcEEEEEECCCC
Q 011732 21 VLYHSESRLLIVMRTEL-----------NNDTCSSDICCVDPLSGSVLSSFKLELG 65 (478)
Q Consensus 21 i~y~~~~~~~~v~~~~~-----------~~~~~~s~l~l~d~~t~~~i~~~~l~~~ 65 (478)
.++++....+++.+... .+....+.|--+|.+|++.+.++++.+.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~ 277 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH 277 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence 46666666666665321 0122456899999999999999987654
No 138
>PLN02153 epithiospecifier protein
Probab=69.59 E-value=1.3e+02 Score=30.44 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=22.6
Q ss_pred EEEEEeccCceEEEEec---CCCCceeEEEEeecCCeEE
Q 011732 253 LFYSYHEDARKLEQIYC---DPSQRLVADCVLMDVDTAV 288 (478)
Q Consensus 253 ~ll~y~~~~~~L~~var---D~~~~~vta~~~ld~~~~l 288 (478)
.+..|+++.++-+.+.. =+.+|...++..+++.-++
T Consensus 218 ~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv 256 (341)
T PLN02153 218 AVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIII 256 (341)
T ss_pred ceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEE
Confidence 35667888887777753 2556766666666655333
No 139
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=69.17 E-value=1.1e+02 Score=34.39 Aligned_cols=191 Identities=17% Similarity=0.188 Sum_probs=108.2
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcE-EEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSV-LSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~-i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~ 95 (478)
|.-.++++++++.++..|. ..|..+|-.|++. +.+..-+..+.++++.+. .++.+++. +
T Consensus 21 tGG~~~~s~nG~~L~t~~~--------d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~--~d~~~L~~--a-------- 80 (775)
T KOG0319|consen 21 TGGPVAWSSNGQHLYTACG--------DRVIIIDVATGSIALPSGSNEDEDEITALALT--PDEEVLVT--A-------- 80 (775)
T ss_pred cCCceeECCCCCEEEEecC--------ceEEEEEccCCceecccCCccchhhhheeeec--CCccEEEE--e--------
Confidence 4444889999888877763 4577788888887 555555566666665543 23344432 2
Q ss_pred CCCCCcCcceE-EEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccccc
Q 011732 96 PSGEAESTKGR-LIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET 174 (478)
Q Consensus 96 ~~~e~~~~~Gr-i~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 174 (478)
.+++ +-+|.+.. |+-+ +.
T Consensus 81 -------~rs~llrv~~L~t---------------------------------------------------gk~i---rs 99 (775)
T KOG0319|consen 81 -------SRSQLLRVWSLPT---------------------------------------------------GKLI---RS 99 (775)
T ss_pred -------eccceEEEEEccc---------------------------------------------------chHh---Hh
Confidence 1333 34777762 1100 01
Q ss_pred ceEEEEEEEecCCceEEEeeeCCceEEEEeC--CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCC----EEEEeec
Q 011732 175 WQLRLAYSTTWPGMVLAICPYLDRYFLASAG--NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFT----RIAVGDC 248 (478)
Q Consensus 175 ~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg--~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n----~IlvgD~ 248 (478)
|| .-.++||.-|+--.+..|++..| +++.||++... . .. ..|-..+-.|.++...++ .++.|+.
T Consensus 100 wK------a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~--~-~t-h~fkG~gGvVssl~F~~~~~~~lL~sg~~ 169 (775)
T KOG0319|consen 100 WK------AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG--Y-CT-HSFKGHGGVVSSLLFHPHWNRWLLASGAT 169 (775)
T ss_pred Hh------hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC--E-EE-EEecCCCceEEEEEeCCccchhheeecCC
Confidence 11 23478998888776653555443 34899999872 1 22 245556778888877653 3455555
Q ss_pred CCcEEEEEEeccCceEEEEec-CCCCceeEEEEeec-CCeEEEeCCCCcEEEEec
Q 011732 249 RDGILFYSYHEDARKLEQIYC-DPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 249 ~~Sv~ll~y~~~~~~L~~var-D~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~ 301 (478)
---+.++.++... . .++. --+...|++..|.. ...++.+-++.-+.++++
T Consensus 170 D~~v~vwnl~~~~--t-cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 170 DGTVRVWNLNDKR--T-CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL 221 (775)
T ss_pred CceEEEEEcccCc--h-HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence 5555555443211 1 1110 01233467777763 346777777777777776
No 140
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=68.35 E-value=1.4e+02 Score=30.63 Aligned_cols=200 Identities=13% Similarity=0.172 Sum_probs=115.7
Q ss_pred EEEeCCC--CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCC-------CceEEEEEEEECC-e
Q 011732 10 RKFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG-------ETGKSMELVRVGH-E 79 (478)
Q Consensus 10 r~i~L~~--tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~-------E~~~s~~~~~l~~-~ 79 (478)
|+|..|. -+..-.|+|+.+.++-... -+.|.+++-.|+++-.-.+.+.. ..++|+ .|.+ .
T Consensus 206 r~IKFg~KSh~EcA~FSPDgqyLvsgSv-------DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci---~FSRDs 275 (508)
T KOG0275|consen 206 RSIKFGQKSHVECARFSPDGQYLVSGSV-------DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCI---SFSRDS 275 (508)
T ss_pred hheecccccchhheeeCCCCceEeeccc-------cceeeeehhccchhhhhhhhhhhcceeecccceEEE---eecccH
Confidence 3444444 4666778888887665543 35788888877775533333322 334443 2333 3
Q ss_pred eEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCC
Q 011732 80 QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSP 159 (478)
Q Consensus 80 ~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (478)
++++-|. --|.|.+|++...
T Consensus 276 EMlAsGs----------------qDGkIKvWri~tG-------------------------------------------- 295 (508)
T KOG0275|consen 276 EMLASGS----------------QDGKIKVWRIETG-------------------------------------------- 295 (508)
T ss_pred HHhhccC----------------cCCcEEEEEEecc--------------------------------------------
Confidence 6666552 3689999999831
Q ss_pred CCCCcCCccccccccceEEEEEEEecCCceEEEeeeCC--ceEEEE-eCCeEEEEeeCCCCcccceeeeecccceeEEEE
Q 011732 160 DDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLD--RYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLL 236 (478)
Q Consensus 160 ~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g--~~Ll~a-vg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL 236 (478)
.-+ +++.-. ....|+|+.--++ . |+.+ -...+.+..+.. .+.|+ .|-...+|+...
T Consensus 296 -------~Cl-----RrFdrA----HtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKS--GK~LK--EfrGHsSyvn~a 354 (508)
T KOG0275|consen 296 -------QCL-----RRFDRA----HTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKS--GKCLK--EFRGHSSYVNEA 354 (508)
T ss_pred -------hHH-----HHhhhh----hccCeeEEEEccCcch-hhcccccceEEEecccc--chhHH--HhcCccccccce
Confidence 001 233222 3456777764443 4 4444 466789999986 34454 233344566555
Q ss_pred EE--eCCEEEEeecCCcEEEEEEeccC--ceEEEEecCCCCceeEEEEeec--CCeEEEeCCCCcEEEEecCC
Q 011732 237 TA--HFTRIAVGDCRDGILFYSYHEDA--RKLEQIYCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 237 ~~--~~n~IlvgD~~~Sv~ll~y~~~~--~~L~~varD~~~~~vta~~~ld--~~~~l~aD~~gNl~vl~~~~ 303 (478)
.. .|+.|+-+..--+|-++.-+..+ ..+...+.|+. |.++..+. ...++++.+...++++....
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~---vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP---VNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc---ceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 43 47888877777777775433221 34444454443 34444443 34899999999999998643
No 141
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=67.09 E-value=21 Score=40.41 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=56.6
Q ss_pred ccceeEEEEEEe----CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCC-------eEEEeCCCCcE
Q 011732 228 RTRFMIMLLTAH----FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-------TAVVSDRKGSI 296 (478)
Q Consensus 228 ~~~~~i~sL~~~----~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~-------~~l~aD~~gNl 296 (478)
..+.-+..|.++ -.+|+|++=.++|++|.|...+.+............+-++.|++.+ .++++|..||+
T Consensus 161 ~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v 240 (717)
T PF08728_consen 161 RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEV 240 (717)
T ss_pred ecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcE
Confidence 344467777776 5899999999999999998765555444444567778888898654 57789999999
Q ss_pred EEEec
Q 011732 297 AVLSC 301 (478)
Q Consensus 297 ~vl~~ 301 (478)
++++.
T Consensus 241 ~~~~I 245 (717)
T PF08728_consen 241 WTFKI 245 (717)
T ss_pred EEEEE
Confidence 99887
No 142
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=66.25 E-value=60 Score=33.84 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=57.4
Q ss_pred CCceEEEEeCCe-EEEEeeCCCCc-ccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEE-EeccCceEEEEecCCC
Q 011732 196 LDRYFLASAGNA-FYVCGFPNDNP-QRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYS-YHEDARKLEQIYCDPS 272 (478)
Q Consensus 196 ~g~~Ll~avg~~-l~v~~l~~~~~-~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~-y~~~~~~L~~varD~~ 272 (478)
.+++|.++.+.+ .+++.+....+ -.|..+.-......+.+.......++|+|...=+..+. +........++...
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGh-- 150 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGH-- 150 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhh--
Confidence 467566666666 56888775332 11222221122223444444567788888766554432 22221222222211
Q ss_pred CceeEEEEee-cCCeEEEeCCCCcEEEEecCCC
Q 011732 273 QRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDR 304 (478)
Q Consensus 273 ~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~~ 304 (478)
-.-++++.+. |+..+|.+|+++.|++.+||..
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~ 183 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT 183 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCcc
Confidence 0113455544 4558999999999999999863
No 143
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=66.23 E-value=1.5e+02 Score=29.62 Aligned_cols=141 Identities=18% Similarity=0.154 Sum_probs=77.7
Q ss_pred cceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCC
Q 011732 41 TCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDC 120 (478)
Q Consensus 41 ~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~ 120 (478)
..+|.|+-+|+.|++++....|++.--+..++++ ++..+.+ | ...|..++|+..
T Consensus 65 yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qL-T---------------Wk~~~~f~yd~~------- 118 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQL-T---------------WKEGTGFVYDPN------- 118 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEE-E---------------SSSSEEEEEETT-------
T ss_pred CCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEE-E---------------ecCCeEEEEccc-------
Confidence 3479999999999999999999987777766665 3332222 2 245666666654
Q ss_pred CCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeCCceE
Q 011732 121 GSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYF 200 (478)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~L 200 (478)
.|+.+.+...+|-=-.||.-+.. |
T Consensus 119 -------------------------------------------------------tl~~~~~~~y~~EGWGLt~dg~~-L 142 (264)
T PF05096_consen 119 -------------------------------------------------------TLKKIGTFPYPGEGWGLTSDGKR-L 142 (264)
T ss_dssp -------------------------------------------------------TTEEEEEEE-SSS--EEEECSSC-E
T ss_pred -------------------------------------------------------cceEEEEEecCCcceEEEcCCCE-E
Confidence 13334444445544455655445 8
Q ss_pred EEEeCCe-EEEEeeCCCCcccceeeeecccce---eEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEE
Q 011732 201 LASAGNA-FYVCGFPNDNPQRVRRFAVGRTRF---MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQ 266 (478)
Q Consensus 201 l~avg~~-l~v~~l~~~~~~~L~~~a~~~~~~---~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~ 266 (478)
+.+-|+. |+.++...- +..+.+...+... .+.-|...+++|++ -+..+=.+++.+++.++.+.
T Consensus 143 i~SDGS~~L~~~dP~~f--~~~~~i~V~~~g~pv~~LNELE~i~G~IyA-NVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 143 IMSDGSSRLYFLDPETF--KEVRTIQVTDNGRPVSNLNELEYINGKIYA-NVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EEE-SSSEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEETTEEEE-EETTSSEEEEEETTT-BEEE
T ss_pred EEECCccceEEECCccc--ceEEEEEEEECCEECCCcEeEEEEcCEEEE-EeCCCCeEEEEeCCCCeEEE
Confidence 9998854 666665431 1233333333333 34456667777644 45555556677777665554
No 144
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=66.17 E-value=18 Score=39.36 Aligned_cols=86 Identities=17% Similarity=0.249 Sum_probs=58.9
Q ss_pred EeCCCCcCEEEEec-CCCeEEEEEEee------------CC----------------------CcceeEEEEEeCCCCcE
Q 011732 12 FHLGGTPKKVLYHS-ESRLLIVMRTEL------------NN----------------------DTCSSDICCVDPLSGSV 56 (478)
Q Consensus 12 i~L~~tp~ki~y~~-~~~~~~v~~~~~------------~~----------------------~~~~s~l~l~d~~t~~~ 56 (478)
+-+....|-++||. .--+|+++.... ++ ++..+.|+++||.+-+.
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 44556778888884 444677765321 11 45678999999999887
Q ss_pred EEEEECCCC-------CceEEEEEEEECCe-eEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 57 LSSFKLELG-------ETGKSMELVRVGHE-QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 57 i~~~~l~~~-------E~~~s~~~~~l~~~-~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
+.+.+...+ ...-++..+.|.++ =.++|||+ .|.+|+|++.
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----------------~G~v~iyDLR 258 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----------------TGSVLIYDLR 258 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeecc----------------CCcEEEEEcc
Confidence 777665543 12224667778774 57888987 6899999998
No 145
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=65.82 E-value=1.8e+02 Score=30.54 Aligned_cols=114 Identities=10% Similarity=0.119 Sum_probs=69.2
Q ss_pred CCceEEEeeeC-CceEEEEeCCe-EEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCce
Q 011732 186 PGMVLAICPYL-DRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK 263 (478)
Q Consensus 186 ~G~V~ai~~~~-g~~Ll~avg~~-l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~ 263 (478)
.++|.++.--. |++|+.+.|-. +++|++.-+.. +..+.-.+.=...++.+..+..|+-|-.-.+|-+ |++..++
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l--wdpktg~ 190 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQ 190 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhccccCCeEEE--ecCCCCC
Confidence 45677665332 45587777654 89999875321 3322222222233344455677777777777777 5666654
Q ss_pred EEEEecCCCCceeEEEEe--e--cCC--eEEEeCCCCcEEEEecCC
Q 011732 264 LEQIYCDPSQRLVADCVL--M--DVD--TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 264 L~~varD~~~~~vta~~~--l--d~~--~~l~aD~~gNl~vl~~~~ 303 (478)
..--+=--+..|+++..+ + +.+ .+..+-++|++++.....
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL 236 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC
Confidence 444334456788888864 2 222 567778899999998754
No 146
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=65.51 E-value=18 Score=37.71 Aligned_cols=50 Identities=14% Similarity=0.291 Sum_probs=37.6
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECC
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE 63 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~ 63 (478)
.+++|+.|..|+.|+++++.+.++|++... +.+.++|..|++++..+...
T Consensus 70 ~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~------~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 70 VVATIKVGGNPRGIAVSPDGKYVYVANYEP------GTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEEE-SSEEEEEEE--TTTEEEEEEEET------TEEEEEETTT--EEEEEE--
T ss_pred EEEEEecCCCcceEEEcCCCCEEEEEecCC------CceeEeccccccceeecccc
Confidence 688999999999999999999999887643 58999999999998876543
No 147
>PHA03098 kelch-like protein; Provisional
Probab=65.07 E-value=2.1e+02 Score=31.00 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=27.2
Q ss_pred CCCeEEEEEEeeCCCcceeEEEEEeCCC--CcEEEEEECCCCCceEEEEEEEECCeeEEEEee
Q 011732 26 ESRLLIVMRTELNNDTCSSDICCVDPLS--GSVLSSFKLELGETGKSMELVRVGHEQVLVVGT 86 (478)
Q Consensus 26 ~~~~~~v~~~~~~~~~~~s~l~l~d~~t--~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT 86 (478)
..++|+++... .......+..+|+.+ |+.+.....+...+ ++ +.++ +.++++|-
T Consensus 342 ~~~lyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~--~~--~~~~-~~iYv~GG 397 (534)
T PHA03098 342 NNRIYVIGGIY--NSISLNTVESWKPGESKWREEPPLIFPRYNP--CV--VNVN-NLIYVIGG 397 (534)
T ss_pred CCEEEEEeCCC--CCEecceEEEEcCCCCceeeCCCcCcCCccc--eE--EEEC-CEEEEECC
Confidence 34566666543 122346788899876 55544333332222 22 3334 45566663
No 148
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=64.90 E-value=1.8e+02 Score=30.24 Aligned_cols=115 Identities=12% Similarity=0.163 Sum_probs=65.0
Q ss_pred EEEEEecCCceEEEeeeCCceEEEEeCCe--EEEEeeCCCCcccceeeeecccceeEEEE--EEeCCEEEEeecCCcEEE
Q 011732 179 LAYSTTWPGMVLAICPYLDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLL--TAHFTRIAVGDCRDGILF 254 (478)
Q Consensus 179 l~~~~~~~G~V~ai~~~~g~~Ll~avg~~--l~v~~l~~~~~~~L~~~a~~~~~~~i~sL--~~~~n~IlvgD~~~Sv~l 254 (478)
+++-....++|+|+.--.+..|++.-|.. -++|+.... ..+-.+.-+. . .|+++ +-.+.+++-||+--=|.+
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHK-D-SVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHK-D-SVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCC-C-ceEEEEEccCceEEEecCCCccEEE
Confidence 34445678999999877543255554433 488888762 1121111111 1 23443 344778888888877777
Q ss_pred EEEeccCceEEEEecCCCCceeEEEEee----cCCeEEEeCCCCcEEEEecCC
Q 011732 255 YSYHEDARKLEQIYCDPSQRLVADCVLM----DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 255 l~y~~~~~~L~~varD~~~~~vta~~~l----d~~~~l~aD~~gNl~vl~~~~ 303 (478)
++-+....+-... -.+..++-+ -...+++++.+|++|+++.|.
T Consensus 133 ~~~stg~~~~~~~------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 133 FKVSTGGEQWKLD------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred EEcccCceEEEee------cccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence 6654332222221 112222222 123678899999999999875
No 149
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=63.88 E-value=1.8e+02 Score=29.78 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=35.0
Q ss_pred EEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCccccee
Q 011732 179 LAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRR 223 (478)
Q Consensus 179 l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~ 223 (478)
.+.+.+++++|.+|+--+++ |++..-++|+||.+.++ .+.++.
T Consensus 87 ~i~el~f~~~I~~V~l~r~r-iVvvl~~~I~VytF~~n-~k~l~~ 129 (346)
T KOG2111|consen 87 CIIELSFNSEIKAVKLRRDR-IVVVLENKIYVYTFPDN-PKLLHV 129 (346)
T ss_pred EEEEEEeccceeeEEEcCCe-EEEEecCeEEEEEcCCC-hhheee
Confidence 45667889999999999899 99999999999999853 333443
No 150
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=63.84 E-value=1.5e+02 Score=31.71 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=77.7
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeee
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS 87 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~ 87 (478)
+++|++..++.+|-+ +.++++.. ...|.|+|-.+.+++.+++.++ +..+... +.+++++-|.
T Consensus 102 ~k~i~~~~~~~~If~---G~LL~~~~--------~~~i~~yDw~~~~~i~~i~v~~------vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG---GNLLGVKS--------SDFICFYDWETGKLIRRIDVSA------VKYVIWSDDGELVALVTK 164 (443)
T ss_dssp T-----SS-EEEEE----SSSEEEEE--------TTEEEEE-TTT--EEEEESS-E-------EEEEE-TTSSEEEEE-S
T ss_pred ceEEcCCcccceEEc---CcEEEEEC--------CCCEEEEEhhHcceeeEEecCC------CcEEEEECCCCEEEEEeC
Confidence 346667667777776 45555542 2369999999999999998763 2223333 3467776654
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCc
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI 167 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (478)
. .+++++.+.. .+.+ .|+ +|-
T Consensus 165 ~-----------------~i~il~~~~~-----------------------------~~~~---------~~~----~g~ 185 (443)
T PF04053_consen 165 D-----------------SIYILKYNLE-----------------------------AVAA---------IPE----EGV 185 (443)
T ss_dssp ------------------SEEEEEE-HH-----------------------------HHHH---------BTT----TB-
T ss_pred C-----------------eEEEEEecch-----------------------------hccc---------ccc----cCc
Confidence 2 4677777631 1111 011 232
Q ss_pred cccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEee
Q 011732 168 KLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGD 247 (478)
Q Consensus 168 ~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD 247 (478)
| ..+.++++ +...|.+.+...+= ++....++|.. +-.. ..-.++.++.+.|+.......|++++-|
T Consensus 186 --e----~~f~~~~E--~~~~IkSg~W~~d~-fiYtT~~~lkY--l~~G---e~~~i~~ld~~~yllgy~~~~~~ly~~D 251 (443)
T PF04053_consen 186 --E----DAFELIHE--ISERIKSGCWVEDC-FIYTTSNHLKY--LVNG---ETGIIAHLDKPLYLLGYLPKENRLYLID 251 (443)
T ss_dssp --G----GGEEEEEE--E-S--SEEEEETTE-EEEE-TTEEEE--EETT---EEEEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred --h----hceEEEEE--ecceeEEEEEEcCE-EEEEcCCeEEE--EEcC---CcceEEEcCCceEEEEEEccCCEEEEEE
Confidence 1 36777774 45666666666664 67777666654 3321 1233455567777777665568888888
Q ss_pred cCCcEEEEEEec
Q 011732 248 CRDGILFYSYHE 259 (478)
Q Consensus 248 ~~~Sv~ll~y~~ 259 (478)
-...+.-+..+.
T Consensus 252 r~~~v~~~~ld~ 263 (443)
T PF04053_consen 252 RDGNVISYELDL 263 (443)
T ss_dssp TT--EEEEE--H
T ss_pred CCCCEEEEEECH
Confidence 777776665543
No 151
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=61.54 E-value=54 Score=36.91 Aligned_cols=114 Identities=7% Similarity=0.048 Sum_probs=75.5
Q ss_pred CCceEEEeeeC-Cce-EEEEeCCeEEEEeeCCCC-cccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCc
Q 011732 186 PGMVLAICPYL-DRY-FLASAGNAFYVCGFPNDN-PQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR 262 (478)
Q Consensus 186 ~G~V~ai~~~~-g~~-Ll~avg~~l~v~~l~~~~-~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~ 262 (478)
++..|.|..-. -+| +.++...+|.+|+++.-. .+.++.-...+....=+.++..+.+|+..-.-+-+.|+.|-..
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-- 673 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-- 673 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc--
Confidence 45566666443 243 344457779999998621 1112221122344556677778999999988999999888532
Q ss_pred eEEEEecCCC-CceeEEEEeecCC-eEEEeCCCCcEEEEecCC
Q 011732 263 KLEQIYCDPS-QRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 263 ~L~~varD~~-~~~vta~~~ld~~-~~l~aD~~gNl~vl~~~~ 303 (478)
+.+|+=+. .--||.+.|+.+- .+|..-.+|-||+++++.
T Consensus 674 --EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 --ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred --hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 34555544 3447888998775 788888999999999865
No 152
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=61.34 E-value=2.1e+02 Score=29.68 Aligned_cols=65 Identities=9% Similarity=0.092 Sum_probs=39.3
Q ss_pred EEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 235 LLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 235 sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
+..+.+++|+++|.-..+.. ++..++++.---+= ....+.+.-++.++.+++++.+|.|+.++.+
T Consensus 330 sp~v~~g~l~v~~~~G~l~~--ld~~tG~~~~~~~~-~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 330 APVLYNGYLVVGDSEGYLHW--INREDGRFVAQQKV-DSSGFLSEPVVADDKLLIQARDGTVYAITRP 394 (394)
T ss_pred CCEEECCEEEEEeCCCEEEE--EECCCCCEEEEEEc-CCCcceeCCEEECCEEEEEeCCceEEEEeCC
Confidence 33456999999988765555 45555554322111 1112222223445688888999999998753
No 153
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=60.39 E-value=1.5e+02 Score=32.30 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=58.3
Q ss_pred CceEEEe-eeCCceEEEEeCCeEEEEeeCC--CCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEE------
Q 011732 187 GMVLAIC-PYLDRYFLASAGNAFYVCGFPN--DNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSY------ 257 (478)
Q Consensus 187 G~V~ai~-~~~g~~Ll~avg~~l~v~~l~~--~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y------ 257 (478)
|.+.... ..+|.+|++.+|..+|+|.+.. +-++-|.+..+..+.-.-.... --.|.-+++-++.+
T Consensus 124 g~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn------~~~a~~~g~dllIGf~tGqv 197 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFN------SFTATPKGLDLLIGFTTGQV 197 (636)
T ss_pred cceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceeccc------ccccCCCCcceEEeeccCce
Confidence 4444443 3356779999999999999983 2222243333332222111111 11122222222211
Q ss_pred ---ecc---CceEEEEecCCCCceeEEEEee--cCCeEEEeCCCCcEEEEec
Q 011732 258 ---HED---ARKLEQIYCDPSQRLVADCVLM--DVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 258 ---~~~---~~~L~~varD~~~~~vta~~~l--d~~~~l~aD~~gNl~vl~~ 301 (478)
++. -.+|.--.+-.....||++.-+ ++..|+++-..||++.+..
T Consensus 198 q~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~ 249 (636)
T KOG2394|consen 198 QLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDK 249 (636)
T ss_pred EEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeec
Confidence 111 1122222344455778888743 6669999999999999975
No 154
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=60.19 E-value=2e+02 Score=29.19 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=111.8
Q ss_pred CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECC-eeEEEEeeecCCCCC
Q 011732 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-EQVLVVGTSLSSGPA 93 (478)
Q Consensus 15 ~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~-~~~l~VGT~~~~g~~ 93 (478)
+.-+..|.|++++.++++++. . -+|+|+|..++..+.++.-.. +.. ..+.|.. ..-++-++..
T Consensus 14 ~~~i~sl~fs~~G~~litss~-d------Dsl~LYd~~~g~~~~ti~skk--yG~--~~~~Fth~~~~~i~sStk----- 77 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSE-D------DSLRLYDSLSGKQVKTINSKK--YGV--DLACFTHHSNTVIHSSTK----- 77 (311)
T ss_pred CCceeEEEecCCCCEEEEecC-C------CeEEEEEcCCCceeeEeeccc--ccc--cEEEEecCCceEEEccCC-----
Confidence 446788999999998888543 2 279999999988777765442 221 2233333 2334444442
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
+| =-|..+.+.. +
T Consensus 78 -----~d----~tIryLsl~d----------------------------------------------------------N 90 (311)
T KOG1446|consen 78 -----ED----DTIRYLSLHD----------------------------------------------------------N 90 (311)
T ss_pred -----CC----CceEEEEeec----------------------------------------------------------C
Confidence 11 1233444431 0
Q ss_pred cceEEEEEEEecCCceEEEe--eeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCc
Q 011732 174 TWQLRLAYSTTWPGMVLAIC--PYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDG 251 (478)
Q Consensus 174 ~~~l~l~~~~~~~G~V~ai~--~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~S 251 (478)
..|++. .-....|.+|+ +.++.+|=.+...+|++|+++-.+.+-+.. ..+-.+...+..|-+.++|---+.
T Consensus 91 -kylRYF--~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----~~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 91 -KYLRYF--PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN----LSGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred -ceEEEc--CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe----cCCCcceeECCCCcEEEEecCCCe
Confidence 122222 12344565544 555664555567789999998533322221 122345555566666666666667
Q ss_pred EEEEEEec---cCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 252 ILFYSYHE---DARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 252 v~ll~y~~---~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
|.++..+. .+-.-..+-. +.....+.++|- |...+|.++..+.++++.--
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF 217 (311)
T ss_pred EEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence 77775443 2322222232 444444688885 44589999999999998743
No 155
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=59.24 E-value=2.3e+02 Score=29.49 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=45.8
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEe---eCCCcceeEEEEEeCCCCcEEEEEECCCC
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTE---LNNDTCSSDICCVDPLSGSVLSSFKLELG 65 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~---~~~~~~~s~l~l~d~~t~~~i~~~~l~~~ 65 (478)
+.+|+.|..||-+ .+|+.+.+.|+++- -.-++....|.++|..|++.+..+.+++.
T Consensus 40 ~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 40 LGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred EEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 4789999999986 99999998888862 12234456899999999999999998866
No 156
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=58.94 E-value=64 Score=34.27 Aligned_cols=45 Identities=24% Similarity=0.171 Sum_probs=32.0
Q ss_pred CCcEEEEEECC--CCCceEEEEEEEEC---------CeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 53 SGSVLSSFKLE--LGETGKSMELVRVG---------HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 53 t~~~i~~~~l~--~~E~~~s~~~~~l~---------~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
++.....-+++ ++|.++|++.+.+. +..+|+||+. .|.+.+|...
T Consensus 42 ~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~s----------------sG~vrfyte~ 97 (415)
T PF14655_consen 42 TYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGTS----------------SGYVRFYTEN 97 (415)
T ss_pred eEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEec----------------ccEEEEEecc
Confidence 34455554444 56999999999992 3489999987 6777777663
No 157
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=58.90 E-value=1.1e+02 Score=31.92 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=48.5
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCC
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPS 97 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~ 97 (478)
...+.|+|+.++++-+..+ .+|+|+|..|++-+.+|. -|+-.+--+.-..+.-|+|..+..
T Consensus 370 Vn~V~fSPd~r~IASaSFD-------kSVkLW~g~tGk~lasfR----GHv~~VYqvawsaDsRLlVS~SkD-------- 430 (480)
T KOG0271|consen 370 VNHVSFSPDGRYIASASFD-------KSVKLWDGRTGKFLASFR----GHVAAVYQVAWSADSRLLVSGSKD-------- 430 (480)
T ss_pred eeeEEECCCccEEEEeecc-------cceeeeeCCCcchhhhhh----hccceeEEEEeccCccEEEEcCCC--------
Confidence 5688999999888777553 379999999999887764 233333333334556666665542
Q ss_pred CCCcCcceEEEEEEEEe
Q 011732 98 GEAESTKGRLIVLCIEH 114 (478)
Q Consensus 98 ~e~~~~~Gri~v~~i~~ 114 (478)
--|.+|++..
T Consensus 431 -------sTLKvw~V~t 440 (480)
T KOG0271|consen 431 -------STLKVWDVRT 440 (480)
T ss_pred -------ceEEEEEeee
Confidence 2578999984
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=58.60 E-value=3e+02 Score=30.65 Aligned_cols=115 Identities=7% Similarity=0.110 Sum_probs=68.8
Q ss_pred EEEecCCceEEEeeeC-CceEEEEeC----CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEE
Q 011732 181 YSTTWPGMVLAICPYL-DRYFLASAG----NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFY 255 (478)
Q Consensus 181 ~~~~~~G~V~ai~~~~-g~~Ll~avg----~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll 255 (478)
.......+|..|...+ |.||...++ ..|.|+.+.+-.+ ..+..-..+....+......-+++|++ .++|-+|
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s--Q~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS--QSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIY 592 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc--cCchhhcCCceeEEEecCCCceEEEEe-ccceEEE
Confidence 3445667788888765 788876655 6699999986212 111111122223333344456777765 4566666
Q ss_pred EEeccC--ceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEecCC
Q 011732 256 SYHEDA--RKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 256 ~y~~~~--~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~~ 303 (478)
.+-.+. ++|. ...+|+..+.+-+ .+++|++-.++-|..|..+-
T Consensus 593 dL~kqelvKkL~-----tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 593 DLSKQELVKKLL-----TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred ehhHHHHHHHHh-----cCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence 553321 3333 3457888887643 35888888888888888754
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=57.86 E-value=95 Score=32.39 Aligned_cols=86 Identities=14% Similarity=0.233 Sum_probs=56.5
Q ss_pred CCeeeEEEeCCC---CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECC-ee
Q 011732 5 KRLNVRKFHLGG---TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-EQ 80 (478)
Q Consensus 5 ~~l~ir~i~L~~---tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~-~~ 80 (478)
..|.+.+.|+-. ...-|+++|..+..+..|+ +-.+|+++|-.+...-.......... -+-++...+ .+
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS------~DgsIrIWDiRs~~~~~~~~~kAh~s--DVNVISWnr~~~ 315 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS------CDGSIRIWDIRSGPKKAAVSTKAHNS--DVNVISWNRREP 315 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeee------cCceEEEEEecCCCccceeEeeccCC--ceeeEEccCCcc
Confidence 568888888876 5777899997776666665 23589999987763322222233332 445566665 36
Q ss_pred EEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEe
Q 011732 81 VLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 81 ~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~ 114 (478)
+|+-|- --|-+.+|++..
T Consensus 316 lLasG~----------------DdGt~~iwDLR~ 333 (440)
T KOG0302|consen 316 LLASGG----------------DDGTLSIWDLRQ 333 (440)
T ss_pred eeeecC----------------CCceEEEEEhhh
Confidence 677661 268899999983
No 160
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=57.81 E-value=1.8e+02 Score=29.94 Aligned_cols=54 Identities=9% Similarity=0.249 Sum_probs=34.1
Q ss_pred EeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCC---------CCcEEEEEECCCCCceEEEE
Q 011732 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL---------SGSVLSSFKLELGETGKSME 72 (478)
Q Consensus 12 i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~---------t~~~i~~~~l~~~E~~~s~~ 72 (478)
++++ +|.++.|.|+-+.++|.+... +.|++|-.. ++..++.++|+.-..+.-+.
T Consensus 130 ve~d-hpT~V~FapDc~s~vv~~~~g------~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~ 192 (420)
T KOG2096|consen 130 VEYD-HPTRVVFAPDCKSVVVSVKRG------NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIIN 192 (420)
T ss_pred ccCC-CceEEEECCCcceEEEEEccC------CEEEEEEeeecccCCCCcccccccccccchhcccceEE
Confidence 3444 999999999999999998632 345554321 23344556666555554443
No 161
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=57.80 E-value=3.9e+02 Score=32.25 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=57.7
Q ss_pred EEEEEEEecCCceEEEeeeCCceEEEE-eCCeEEEEeeCCCCcccceeee--ecccceeEEEEEEeCC--EEEEeecCCc
Q 011732 177 LRLAYSTTWPGMVLAICPYLDRYFLAS-AGNAFYVCGFPNDNPQRVRRFA--VGRTRFMIMLLTAHFT--RIAVGDCRDG 251 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~g~~Ll~a-vg~~l~v~~l~~~~~~~L~~~a--~~~~~~~i~sL~~~~n--~IlvgD~~~S 251 (478)
|.=+.-.+.+--|+++..+++. |++| +=+.+..+.|+++..+ |.-.+ +-....+.+..-+.|+ ..+|.|.-+-
T Consensus 1129 ligVaFiD~~~yv~s~~~vknl-Il~gDV~ksisfl~fqeep~r-lsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rN 1206 (1366)
T KOG1896|consen 1129 LIGVAFIDLPLYVHSMKVVKNL-ILAGDVMKSISFLGFQEEPYR-LSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRN 1206 (1366)
T ss_pred ceeeEEeccceeEEehhhhhhh-eehhhhhhceEEEEEccCceE-EEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCc
Confidence 4444556777788899999887 7777 5677999999875433 43322 3233445555555564 5589999999
Q ss_pred EEEEEEeccC
Q 011732 252 ILFYSYHEDA 261 (478)
Q Consensus 252 v~ll~y~~~~ 261 (478)
+.+|.|.|+.
T Consensus 1207 i~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1207 IHVYMYAPEN 1216 (1366)
T ss_pred EEEEEeCCCC
Confidence 9999999864
No 162
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.43 E-value=27 Score=35.16 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=62.1
Q ss_pred CcCEEEEecCCCeEEEEEE----ee-------CCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEe
Q 011732 17 TPKKVLYHSESRLLIVMRT----EL-------NNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVG 85 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~----~~-------~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VG 85 (478)
-|+-+...++.++++|+-- .+ |-.....++-|+|..|+++|..+.|++.-.-+|+.-+-++++--+.-|
T Consensus 163 GpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 163 GPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred CcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 6999999999999999752 11 223567899999999999999999999999999999988888788889
Q ss_pred eecCC
Q 011732 86 TSLSS 90 (478)
Q Consensus 86 T~~~~ 90 (478)
+-|--
T Consensus 243 cQy~G 247 (366)
T COG3490 243 CQYRG 247 (366)
T ss_pred EEeeC
Confidence 98743
No 163
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=56.94 E-value=76 Score=29.66 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=32.6
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEE
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFK 61 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~ 61 (478)
....|.|+|.++.++++.... ..+.|+|+|..+++.+..++
T Consensus 102 ~~n~i~wsP~G~~l~~~g~~n----~~G~l~~wd~~~~~~i~~~~ 142 (194)
T PF08662_consen 102 PRNTISWSPDGRFLVLAGFGN----LNGDLEFWDVRKKKKISTFE 142 (194)
T ss_pred CceEEEECCCCCEEEEEEccC----CCcEEEEEECCCCEEeeccc
Confidence 556799999999998887543 34789999999998887654
No 164
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=56.85 E-value=1.4e+02 Score=31.10 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=55.6
Q ss_pred CCeEEEEeeCCCCcccceeeeec-ccceeEEEEEE--eCCEEEEeecCCcEEEEEEeccCceEEEEecCCC----CceeE
Q 011732 205 GNAFYVCGFPNDNPQRVRRFAVG-RTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPS----QRLVA 277 (478)
Q Consensus 205 g~~l~v~~l~~~~~~~L~~~a~~-~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~----~~~vt 277 (478)
...+|.|++..= -+++..+ +..+-+.+++. -|.-++.|-.-+||-+|..+... +||.. -..|.
T Consensus 250 D~nlY~~DmR~l----~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~------SRdiYhtkRMq~V~ 319 (433)
T KOG0268|consen 250 DHNLYTYDMRNL----SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH------SRDIYHTKRMQHVF 319 (433)
T ss_pred cccceehhhhhh----cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc------chhhhhHhhhheee
Confidence 344888888751 1233322 44445555543 47888899999999999876532 24421 12456
Q ss_pred EEEe-ecCCeEEEeCCCCcEEEEec
Q 011732 278 DCVL-MDVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 278 a~~~-ld~~~~l~aD~~gNl~vl~~ 301 (478)
++.. .|...++.+-.++|+.+.+-
T Consensus 320 ~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred EEEEeccccEEEecCCCcceeeeec
Confidence 6665 46668888888999997774
No 165
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=55.31 E-value=60 Score=33.02 Aligned_cols=74 Identities=14% Similarity=0.129 Sum_probs=48.2
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECC-eeEEEEeeecCCCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH-EQVLVVGTSLSSGPAI 94 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~-~~~l~VGT~~~~g~~~ 94 (478)
+..|.|.+||.+..++|++- + ..++|+|-+|++..-+-. +...+--+++.+.... ....+-|
T Consensus 217 ~~vrsiSfHPsGefllvgTd-H------p~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTa--------- 279 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTD-H------PTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTA--------- 279 (430)
T ss_pred ceeeeEeecCCCceEEEecC-C------CceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEe---------
Confidence 35788999998888777753 3 379999999988765544 4444444455555442 2344433
Q ss_pred CCCCCCcCcceEEEEEEEE
Q 011732 95 MPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 95 ~~~~e~~~~~Gri~v~~i~ 113 (478)
..-|.|.+|+=.
T Consensus 280 -------SkDG~IklwDGV 291 (430)
T KOG0640|consen 280 -------SKDGAIKLWDGV 291 (430)
T ss_pred -------ccCCcEEeeccc
Confidence 136888888876
No 166
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=54.31 E-value=2.4e+02 Score=28.30 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=40.9
Q ss_pred eEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEe
Q 011732 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~ 114 (478)
.+++|+|-.|++.+.+.+++ ..+..+.|. +..++++-|-..+| ..|.|-+|++..
T Consensus 74 ~t~kLWDv~tGk~la~~k~~-----~~Vk~~~F~~~gn~~l~~tD~~mg-----------~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTN-----SPVKRVDFSFGGNLILASTDKQMG-----------YTCFVSVFDIRD 129 (327)
T ss_pred ceeEEEEcCCCcEEEEeecC-----CeeEEEeeccCCcEEEEEehhhcC-----------cceEEEEEEccC
Confidence 46788888888888776644 345666665 45788888877665 689999999983
No 167
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=54.04 E-value=2.5e+02 Score=29.18 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=55.1
Q ss_pred EEeeeCCceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccC------c
Q 011732 191 AICPYLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDA------R 262 (478)
Q Consensus 191 ai~~~~g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~------~ 262 (478)
|..+++|+ |+++- .++|.+|+... ...|+... ..--.|-.|.-.+.+|+-|-.-.-+-+..++... +
T Consensus 364 AClQYr~r-lvVSGSSDntIRlwdi~~--G~cLRvLe--GHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~ 438 (499)
T KOG0281|consen 364 ACLQYRDR-LVVSGSSDNTIRLWDIEC--GACLRVLE--GHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPAS 438 (499)
T ss_pred eehhccCe-EEEecCCCceEEEEeccc--cHHHHHHh--chHHhhhheeecCceeeeccccceEEEEecccccCCccccc
Confidence 45578899 66653 56689999876 33343221 0111344455556666666555556666654321 1
Q ss_pred eEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCCC
Q 011732 263 KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDR 304 (478)
Q Consensus 263 ~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~~ 304 (478)
.|-+..--.+.-.|.-..| |+-.++.+.-+.-|.+..+.+.
T Consensus 439 ~~Cl~~lv~hsgRVFrLQF-D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 439 TLCLRTLVEHSGRVFRLQF-DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred chHHHhhhhccceeEEEee-cceEEEeccCCCeEEEEEcCCC
Confidence 1111111111112222232 4446777777777888877543
No 168
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=53.83 E-value=3.1e+02 Score=29.49 Aligned_cols=57 Identities=11% Similarity=0.154 Sum_probs=35.6
Q ss_pred EEEeCCCCcCEEEEecCCCeEEEEEEee------CC----------------------C------cceeEEEEEeCCCCc
Q 011732 10 RKFHLGGTPKKVLYHSESRLLIVMRTEL------NN----------------------D------TCSSDICCVDPLSGS 55 (478)
Q Consensus 10 r~i~L~~tp~ki~y~~~~~~~~v~~~~~------~~----------------------~------~~~s~l~l~d~~t~~ 55 (478)
+++|-......+.+.-+...++.+..+- .. + -.-..+-++|..+++
T Consensus 230 ~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 230 KSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred ccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence 3444555667778887777777765221 00 1 113467788888888
Q ss_pred EEEEEECCCCC
Q 011732 56 VLSSFKLELGE 66 (478)
Q Consensus 56 ~i~~~~l~~~E 66 (478)
....|+|...+
T Consensus 310 ~~q~f~~~s~~ 320 (524)
T KOG0273|consen 310 VKQQFEFHSAP 320 (524)
T ss_pred EEEeeeeccCC
Confidence 88877776554
No 169
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=52.40 E-value=2.6e+02 Score=28.09 Aligned_cols=245 Identities=13% Similarity=0.072 Sum_probs=126.5
Q ss_pred eeeEEEe---CCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeC--CCCcEEEEEECCCCCceEEEEEEEECC-ee
Q 011732 7 LNVRKFH---LGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDP--LSGSVLSSFKLELGETGKSMELVRVGH-EQ 80 (478)
Q Consensus 7 l~ir~i~---L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~--~t~~~i~~~~l~~~E~~~s~~~~~l~~-~~ 80 (478)
|..+++- -.++.|+|+++|..++++.+.-+ +++.++.. ..||+++.+|=.+||. +.+.+.. ..
T Consensus 50 ~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD-------~t~~Iw~k~~~efecv~~lEGHEnEV----K~Vaws~sG~ 118 (312)
T KOG0645|consen 50 WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD-------ATVVIWKKEDGEFECVATLEGHENEV----KCVAWSASGN 118 (312)
T ss_pred EEEEEeccccchheeeeeeecCCCcEEEEeecc-------ceEEEeecCCCceeEEeeeeccccce----eEEEEcCCCC
Confidence 4445443 23589999999999987777543 23444443 3588888888777774 4455553 46
Q ss_pred EEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCC
Q 011732 81 VLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPD 160 (478)
Q Consensus 81 ~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (478)
||+-.+. --.+.+|++.+. +-++|.+-.
T Consensus 119 ~LATCSR----------------DKSVWiWe~ded------dEfec~aVL------------------------------ 146 (312)
T KOG0645|consen 119 YLATCSR----------------DKSVWIWEIDED------DEFECIAVL------------------------------ 146 (312)
T ss_pred EEEEeeC----------------CCeEEEEEecCC------CcEEEEeee------------------------------
Confidence 7764433 125788888731 111111111
Q ss_pred CCCcCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEEe--CCeEEEEeeCCCCcccceeeeecccce-eEEEE-
Q 011732 161 DASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRF-MIMLL- 236 (478)
Q Consensus 161 ~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~-~i~sL- 236 (478)
.=|..++++.+-. +-.+ |+++. .++|.+|+-..++. ..-++.++.+. .+-++
T Consensus 147 ------------------~~HtqDVK~V~WH--Pt~d--lL~S~SYDnTIk~~~~~~ddd--W~c~~tl~g~~~TVW~~~ 202 (312)
T KOG0645|consen 147 ------------------QEHTQDVKHVIWH--PTED--LLFSCSYDNTIKVYRDEDDDD--WECVQTLDGHENTVWSLA 202 (312)
T ss_pred ------------------ccccccccEEEEc--CCcc--eeEEeccCCeEEEEeecCCCC--eeEEEEecCccceEEEEE
Confidence 0112223322221 1123 44443 67899997764322 33334444333 34444
Q ss_pred -EEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCCCcccCCCCCccc
Q 011732 237 -TAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNL 315 (478)
Q Consensus 237 -~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L 315 (478)
...|++++.++=-.-+.+.++... -...+++.+..+.- +.+.+..+=.++-|.+|+-.... ..|..+|
T Consensus 203 F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~~Y~v~W-~~~~IaS~ggD~~i~lf~~s~~~---d~p~~~l 271 (312)
T KOG0645|consen 203 FDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRALYDVPW-DNGVIASGGGDDAIRLFKESDSP---DEPSWNL 271 (312)
T ss_pred ecCCCceEEEecCCcceEeeeeccC-------cchhcccceEeeee-cccceEeccCCCEEEEEEecCCC---CCchHHH
Confidence 344678877766666666653210 01233344444432 23455555667888888865321 1232222
Q ss_pred ee-eeeeecCccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceE
Q 011732 316 TP-NCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIV 369 (478)
Q Consensus 316 ~~-~~~fhlGd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg 369 (478)
.. ...-| +.-||++. ++| .....++-++-+|.|-
T Consensus 272 ~~~~~~aH-e~dVNsV~------w~p-------------~~~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 272 LAKKEGAH-EVDVNSVQ------WNP-------------KVSNRLASGGDDGIVN 306 (312)
T ss_pred HHhhhccc-ccccceEE------EcC-------------CCCCceeecCCCceEE
Confidence 22 22222 45667774 233 2245567777776554
No 170
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=52.28 E-value=2.6e+02 Score=28.13 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=68.2
Q ss_pred cCCceEEEeeeCCceEEEEeCC--eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCE-EEEeecCCcEEEEEEecc-
Q 011732 185 WPGMVLAICPYLDRYFLASAGN--AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTR-IAVGDCRDGILFYSYHED- 260 (478)
Q Consensus 185 ~~G~V~ai~~~~g~~Ll~avg~--~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~-IlvgD~~~Sv~ll~y~~~- 260 (478)
..|.|++++--.++.|.+.-|. ++++|++.+ ++- +-.....-.|.++....|+ .++.-.-.||-++.....
T Consensus 191 h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~--~k~---lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE--GKN---LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred ccccEEEEEECCCCCEEecCCCCceEEEEEccC--Cce---eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchh
Confidence 5688888887666536555443 389999987 222 2334555578888877654 455566668777553321
Q ss_pred ---CceEEEEecC--CCCceeEEEEee-cCCeEEEeCCCCcEEEEec
Q 011732 261 ---ARKLEQIYCD--PSQRLVADCVLM-DVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 261 ---~~~L~~varD--~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~ 301 (478)
+.++..++-. ...-.++++..- |..++++++.++-|.++++
T Consensus 266 ~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 266 VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 2233333321 112234555543 5558999999999998875
No 171
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=50.56 E-value=2.7e+02 Score=27.83 Aligned_cols=170 Identities=11% Similarity=0.104 Sum_probs=94.8
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeec
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSL 88 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~ 88 (478)
+..|...+---.|+|+|..+.++|+-.+ -.|-++|..+.+++..++|.-.+.-. .|.+.++-|++ -++
T Consensus 100 ~~~i~~~~eni~i~wsp~g~~~~~~~kd-------D~it~id~r~~~~~~~~~~~~e~ne~---~w~~~nd~Ffl-t~G- 167 (313)
T KOG1407|consen 100 TARIETKGENINITWSPDGEYIAVGNKD-------DRITFIDARTYKIVNEEQFKFEVNEI---SWNNSNDLFFL-TNG- 167 (313)
T ss_pred EEEeeccCcceEEEEcCCCCEEEEecCc-------ccEEEEEecccceeehhcccceeeee---eecCCCCEEEE-ecC-
Confidence 3345555555678899999988888532 36889999999998887666433322 23344444444 333
Q ss_pred CCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcc
Q 011732 89 SSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIK 168 (478)
Q Consensus 89 ~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 168 (478)
-|.+-++...+
T Consensus 168 ---------------lG~v~ILsyps------------------------------------------------------ 178 (313)
T KOG1407|consen 168 ---------------LGCVEILSYPS------------------------------------------------------ 178 (313)
T ss_pred ---------------CceEEEEeccc------------------------------------------------------
Confidence 46777777652
Q ss_pred ccccccceEEEEEEEe-cCCceEEEeee-CCceEEEEeC-CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEE
Q 011732 169 LEETETWQLRLAYSTT-WPGMVLAICPY-LDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV 245 (478)
Q Consensus 169 ~~~~~~~~l~l~~~~~-~~G~V~ai~~~-~g~~Ll~avg-~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Ilv 245 (478)
|+-+.+.. .+..+.||.-- .|+|+++|.- .-+-+|+.++= -=++-..-.+-|....|.+..+.+|.-
T Consensus 179 --------Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL--iC~R~isRldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 179 --------LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL--ICERCISRLDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred --------cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh--hhheeeccccCceEEEEeccCcceeec
Confidence 22222222 23445555422 2788776653 33678887650 002222334455666666666676666
Q ss_pred eecCCcEEEEEEeccCceEEEEecC
Q 011732 246 GDCRDGILFYSYHEDARKLEQIYCD 270 (478)
Q Consensus 246 gD~~~Sv~ll~y~~~~~~L~~varD 270 (478)
|---+.|-+.. -+...++.++-.+
T Consensus 249 aSEDh~IDIA~-vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 249 ASEDHFIDIAE-VETGDRVWEIPCE 272 (313)
T ss_pred cCccceEEeEe-cccCCeEEEeecc
Confidence 55555554443 2344555555433
No 172
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=50.43 E-value=3.4e+02 Score=28.91 Aligned_cols=154 Identities=13% Similarity=0.128 Sum_probs=90.0
Q ss_pred EEEEEEecCCceEEEee--e-C--C-ceEEEEeCCeEEEEeeCCCCc-------ccceeeeecccceeEEEEEEe-----
Q 011732 178 RLAYSTTWPGMVLAICP--Y-L--D-RYFLASAGNAFYVCGFPNDNP-------QRVRRFAVGRTRFMIMLLTAH----- 239 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~--~-~--g-~~Ll~avg~~l~v~~l~~~~~-------~~L~~~a~~~~~~~i~sL~~~----- 239 (478)
-++-+++++.||..|.. | . + ..|++=-=++|.||.+...+. -.|...-.+..+..+.++.+-
T Consensus 63 ~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~ 142 (418)
T PF14727_consen 63 DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGV 142 (418)
T ss_pred cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCC
Confidence 46778899999998873 2 1 2 213332356689998843211 124443334444455555441
Q ss_pred --CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCCCcccCC-C-----
Q 011732 240 --FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDRLEDNA-S----- 310 (478)
Q Consensus 240 --~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~~~~~s~-~----- 310 (478)
.++|.|=.+--.++|+.- +.-.|...=-| -.-...+.+. ..++++.+-....+-.|+|..-...+. .
T Consensus 143 ~~~~~IcVQS~DG~L~~feq--e~~~f~~~lp~--~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~ 218 (418)
T PF14727_consen 143 KGRDFICVQSMDGSLSFFEQ--ESFAFSRFLPD--FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSG 218 (418)
T ss_pred CCceEEEEEecCceEEEEeC--CcEEEEEEcCC--CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccc
Confidence 478888777777777642 22222222222 1112233333 235888888888898888855333211 0
Q ss_pred ------CCccceeeeeeecCccccEEEeeee
Q 011732 311 ------PECNLTPNCAYHMGEIAVSIRKGSF 335 (478)
Q Consensus 311 ------~~~~L~~~~~fhlGd~vt~~~~gsl 335 (478)
..+++...=.|.+||.+..|.-.+.
T Consensus 219 ~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~ 249 (418)
T PF14727_consen 219 TEQDISSGKKLNPDWSFNLGEQALDIQVVRF 249 (418)
T ss_pred ccccccccccccceeEEECCceeEEEEEEEc
Confidence 2257888889999999999887664
No 173
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=46.96 E-value=1.2e+02 Score=31.05 Aligned_cols=139 Identities=14% Similarity=0.084 Sum_probs=79.2
Q ss_pred EecCCceEEEeeeCCceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEE--EeCCEEEEeecCCcEEEEEEe
Q 011732 183 TTWPGMVLAICPYLDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 183 ~~~~G~V~ai~~~~g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~--~~~n~IlvgD~~~Sv~ll~y~ 258 (478)
.+.-.+|..+.-..-..|+++. .++|.+|++.+...++- ...+.-.-.+-+|+ ..|+|++||+=..-+-+|...
T Consensus 169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA--~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA--FKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH--HHHhhccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence 4566778877755543255554 45589999987432211 11111122455555 458999999999988887654
Q ss_pred ccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEE
Q 011732 259 EDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIR 331 (478)
Q Consensus 259 ~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~ 331 (478)
..+--+.-.-.|...-.++++..-. ...++.+-++|.|.+++--. ..| ....+.-|=|..|.+..
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS-------~rC-v~t~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS-------NRC-VRTIGNAHGGSEVCSAV 312 (430)
T ss_pred ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecccc-------HHH-HHHHHhhcCCceeeeEE
Confidence 3222222223344444455555432 23789999999999887322 111 44555556565555443
No 174
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.20 E-value=2.2e+02 Score=28.21 Aligned_cols=80 Identities=11% Similarity=0.060 Sum_probs=50.1
Q ss_pred EEEEEE-ecCCceEEEeeeC---CceEEEEe--CCeEEEEeeCCCCccccee-eeecccceeEEEEEE----eCCEEEEe
Q 011732 178 RLAYST-TWPGMVLAICPYL---DRYFLASA--GNAFYVCGFPNDNPQRVRR-FAVGRTRFMIMLLTA----HFTRIAVG 246 (478)
Q Consensus 178 ~l~~~~-~~~G~V~ai~~~~---g~~Ll~av--g~~l~v~~l~~~~~~~L~~-~a~~~~~~~i~sL~~----~~n~Ilvg 246 (478)
+++.+. -..|||..+.-.. |. |+++. ..+|.+|+-++ .+ ..+ ..+......+.++.- .+-.+++|
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~--g~-w~k~~e~~~h~~SVNsV~wapheygl~Laca 122 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEEN--GR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACA 122 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCc-EeeEeecCceEEEEecCC--Cc-hhhhhhhhhhcccceeecccccccceEEEEe
Confidence 334433 3679998887443 66 66665 66788888776 33 333 223233344555543 24566788
Q ss_pred ecCCcEEEEEEeccC
Q 011732 247 DCRDGILFYSYHEDA 261 (478)
Q Consensus 247 D~~~Sv~ll~y~~~~ 261 (478)
-.--.|.+|.|+.+.
T Consensus 123 sSDG~vsvl~~~~~g 137 (299)
T KOG1332|consen 123 SSDGKVSVLTYDSSG 137 (299)
T ss_pred eCCCcEEEEEEcCCC
Confidence 888899999998763
No 175
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.05 E-value=4e+02 Score=28.39 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=60.8
Q ss_pred cCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeee-ecccceeEEEEEEeC--CEEEEeecCCcEEEEEEec
Q 011732 185 WPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTAHF--TRIAVGDCRDGILFYSYHE 259 (478)
Q Consensus 185 ~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a-~~~~~~~i~sL~~~~--n~IlvgD~~~Sv~ll~y~~ 259 (478)
...|+++.+--+ |+|.++.. .+.+++|++++ + +..++.. -....+.|-|=-.-+ .||+-|---.= ++.|+.
T Consensus 394 e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e-~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k--vyIWhr 469 (519)
T KOG0293|consen 394 EEQPITSFSISKDGKLALVNLQDQEIHLWDLEE-N-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK--VYIWHR 469 (519)
T ss_pred ccCceeEEEEcCCCcEEEEEcccCeeEEeecch-h-hHHHHhhcccccceEEEeccCCCCcceEEecCCCce--EEEEEc
Confidence 345666666443 67666664 77799999994 2 3233211 112333343322222 45555543333 444655
Q ss_pred cCce-EEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 260 DARK-LEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 260 ~~~~-L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
..++ +.++........+.+-..-|...+..|-.+|-|.+..-.
T Consensus 470 ~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 470 ISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred cCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 5444 445555554444444444454466666778888877643
No 176
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=45.69 E-value=96 Score=35.78 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=44.4
Q ss_pred eEEEeeeCCceEEEEeCCeE---EEEeeCCCCccccee-eeecccceeEEEEEEeCCEEEEeecCCcEEEEEEec
Q 011732 189 VLAICPYLDRYFLASAGNAF---YVCGFPNDNPQRVRR-FAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE 259 (478)
Q Consensus 189 V~ai~~~~g~~Ll~avg~~l---~v~~l~~~~~~~L~~-~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~ 259 (478)
++++|....+ ++.++|-.. .+|.-+. ++... .+.+..++....-+-.|+.++-+|.+.+|.+++|+.
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~---~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNT---TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCC---ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 3567877778 777777553 4443332 22222 234445555555666799999999999999999973
No 177
>KOG4328 consensus WD40 protein [Function unknown]
Probab=45.57 E-value=1.6e+02 Score=31.43 Aligned_cols=118 Identities=10% Similarity=0.113 Sum_probs=65.0
Q ss_pred EecCCceEEEeeeC--CceEEEEeCC---eEEEEeeCCCCcccceeeeecccceeEEEEEEe---CCEEEEeecCCcEEE
Q 011732 183 TTWPGMVLAICPYL--DRYFLASAGN---AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH---FTRIAVGDCRDGILF 254 (478)
Q Consensus 183 ~~~~G~V~ai~~~~--g~~Ll~avg~---~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~---~n~IlvgD~~~Sv~l 254 (478)
..+.|.|++++-.. .+ =++|+|. .|-+|+++-..+..=.-+-|....-.|.+|... .+.|+..-.--++-+
T Consensus 183 kv~~~Rit~l~fHPt~~~-~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENR-KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred EecccceEEEEecccCcc-eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 34678888887544 43 2344444 489999952111101111233333356666654 245544433333333
Q ss_pred EEEeccCceEEEEec-CCCCceeEEEEeecCC-eEEEeCCCCcEEEEecCC
Q 011732 255 YSYHEDARKLEQIYC-DPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 255 l~y~~~~~~L~~var-D~~~~~vta~~~ld~~-~~l~aD~~gNl~vl~~~~ 303 (478)
-.| +.+.+.++.+ |....|..++.|..++ .++.+|..||+.++...-
T Consensus 262 ~D~--~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 262 QDF--EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred eee--cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 322 3344444433 4567788888887554 899999999777776543
No 178
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=44.78 E-value=3.8e+02 Score=27.78 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=41.6
Q ss_pred EEeCCCCcCEEEEecCCCeEEEEEEee---CCCcceeEEEEEeCCCCcEEEEEECCCCCceEE
Q 011732 11 KFHLGGTPKKVLYHSESRLLIVMRTEL---NNDTCSSDICCVDPLSGSVLSSFKLELGETGKS 70 (478)
Q Consensus 11 ~i~L~~tp~ki~y~~~~~~~~v~~~~~---~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s 70 (478)
.|+.|..+. ++.+|+.+.+.++.+-. .-++-.-.|.++|..|.....-+++++..+.++
T Consensus 32 mi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 32 MIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred EeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 477777777 66789999888877532 223445689999999999998888887755543
No 179
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.02 E-value=63 Score=37.98 Aligned_cols=75 Identities=11% Similarity=0.147 Sum_probs=47.0
Q ss_pred EecCCceEEEeeeC-CceEEEEeCC-eEEEEeeCCCCcccceeeeecccce--eEEEEEEeC-CEEEEeecCCcEEEEEE
Q 011732 183 TTWPGMVLAICPYL-DRYFLASAGN-AFYVCGFPNDNPQRVRRFAVGRTRF--MIMLLTAHF-TRIAVGDCRDGILFYSY 257 (478)
Q Consensus 183 ~~~~G~V~ai~~~~-g~~Ll~avg~-~l~v~~l~~~~~~~L~~~a~~~~~~--~i~sL~~~~-n~IlvgD~~~Sv~ll~y 257 (478)
..+.|||++++--. |+.|++|-+. -|.+|+... ++.++..-+...|- .++.+...+ ..++.+|..-|++=+.|
T Consensus 127 e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~--~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~lv~ 204 (1206)
T KOG2079|consen 127 ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR--AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKLVF 204 (1206)
T ss_pred CccCCcceeeEecCCCceeccccCCCcEEEEEccC--CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEEEEe
Confidence 34779999998554 5534455433 388888876 34455443333222 344444444 45889999999888877
Q ss_pred ec
Q 011732 258 HE 259 (478)
Q Consensus 258 ~~ 259 (478)
..
T Consensus 205 nk 206 (1206)
T KOG2079|consen 205 NK 206 (1206)
T ss_pred ch
Confidence 64
No 180
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=43.98 E-value=4.2e+02 Score=28.50 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=57.9
Q ss_pred eCCeEEEEeeCCCCcccceeeeecccceeEEEEEEe----CCEEEEeecCCcEEEEEEeccC-----ceEEEEecCCC--
Q 011732 204 AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH----FTRIAVGDCRDGILFYSYHEDA-----RKLEQIYCDPS-- 272 (478)
Q Consensus 204 vg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~----~n~IlvgD~~~Sv~ll~y~~~~-----~~L~~varD~~-- 272 (478)
-|++|++|+|.. .+.++.+..-.-...+..|... .+.=+||.+..|=.+.-|+.++ .+.+.+..-..
T Consensus 220 yG~~l~vWD~~~--r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 220 YGHSLHVWDWST--RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp S--EEEEEETTT--TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccCeEEEEECCC--CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 389999999997 2323333222222455566543 5788899888876555565333 23444422111
Q ss_pred -------------CceeEEEEe-ecCC-eEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEE
Q 011732 273 -------------QRLVADCVL-MDVD-TAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSI 330 (478)
Q Consensus 273 -------------~~~vta~~~-ld~~-~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~ 330 (478)
|--+|++.+ +|+. .++..=.+|.++.|+..+ |. +-...++.++|.++.+-
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD-------P~-~Pkl~gqv~lGG~~~~~ 362 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD-------PF-NPKLVGQVFLGGSIRKG 362 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS-------TT-S-EEEEEEE-BTTTT-B
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC-------CC-CCcEEeEEEECcEeccC
Confidence 223455554 3554 455556699999888754 22 45578899999987654
No 181
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.75 E-value=5.2e+02 Score=29.06 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=36.6
Q ss_pred CCCCeeeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEEC
Q 011732 3 HNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKL 62 (478)
Q Consensus 3 ~~~~l~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l 62 (478)
+....-++++.+.+.|-|-+-.-..+-.+|..++- ..||+++-.|++.+..|+-
T Consensus 42 yetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD------~~IrVfnynt~ekV~~FeA 95 (794)
T KOG0276|consen 42 YETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDD------MQIRVFNYNTGEKVKTFEA 95 (794)
T ss_pred cccceeeeeeeecccchhhheeeeccceEEEecCC------ceEEEEecccceeeEEeec
Confidence 34445577777777776666555555555655533 4799999999988877653
No 182
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=43.37 E-value=32 Score=21.89 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=17.4
Q ss_pred CCceEEEEEEEECCeeEEEEeeecCC
Q 011732 65 GETGKSMELVRVGHEQVLVVGTSLSS 90 (478)
Q Consensus 65 ~E~~~s~~~~~l~~~~~l~VGT~~~~ 90 (478)
+|.+.|++. ++.+++|+|+..+
T Consensus 1 gE~i~aia~----g~~~vavaTS~~~ 22 (27)
T PF12341_consen 1 GEEIEAIAA----GDSWVAVATSAGY 22 (27)
T ss_pred CceEEEEEc----cCCEEEEEeCCCe
Confidence 588888877 5789999998643
No 183
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=43.15 E-value=1.9e+02 Score=30.26 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=46.9
Q ss_pred EEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCc-EEEEEECCCCCceEEEEEEEECCeeEEEEeeecC
Q 011732 11 KFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS-VLSSFKLELGETGKSMELVRVGHEQVLVVGTSLS 89 (478)
Q Consensus 11 ~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~-~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~ 89 (478)
++.-+.....|.|+|..++++.++++. -++|+||.+.. -+-++.|-..-.-.+..-|.-. ++|..|.-++
T Consensus 296 ~~~~~ksl~~i~~~~~~~Ll~~gssdr-------~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~-~~~~~~S~S~- 366 (423)
T KOG0313|consen 296 TLTTNKSLNCISYSPLSKLLASGSSDR-------HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT-NEFQLVSGSY- 366 (423)
T ss_pred eeecCcceeEeecccccceeeecCCCC-------ceeecCCCCCCCceeEEeeecchhhhhheecCCC-CceEEEEEec-
Confidence 344455677899999888888887755 49999998853 2222333322222222222222 3555555443
Q ss_pred CCCCCCCCCCCcCcceEEEEEEEE
Q 011732 90 SGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 90 ~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
-|-+.+|++.
T Consensus 367 --------------D~t~klWDvR 376 (423)
T KOG0313|consen 367 --------------DNTVKLWDVR 376 (423)
T ss_pred --------------CCeEEEEEec
Confidence 3567888887
No 184
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=43.07 E-value=3e+02 Score=26.14 Aligned_cols=113 Identities=16% Similarity=0.041 Sum_probs=66.1
Q ss_pred EecCCceEEEeee-CCceEEEEeCCeEEEEeeCCCCcccceeeeec---c-cceeEEEEEEe-CCEEEEeecCCcE----
Q 011732 183 TTWPGMVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRRFAVG---R-TRFMIMLLTAH-FTRIAVGDCRDGI---- 252 (478)
Q Consensus 183 ~~~~G~V~ai~~~-~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~---~-~~~~i~sL~~~-~n~IlvgD~~~Sv---- 252 (478)
....+|+...... +|+ |++|....+.++++.. ..++..... . .......+.+. ++.++++|.....
T Consensus 37 ~~~~~~~G~~~~~~~g~-l~v~~~~~~~~~d~~~---g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~ 112 (246)
T PF08450_consen 37 IDLPGPNGMAFDRPDGR-LYVADSGGIAVVDPDT---GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGI 112 (246)
T ss_dssp EESSSEEEEEEECTTSE-EEEEETTCEEEEETTT---TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCG
T ss_pred EecCCCceEEEEccCCE-EEEEEcCceEEEecCC---CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccc
Confidence 4555666666663 455 8999988888887664 224433322 1 34567777765 3569999986643
Q ss_pred ---EEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCC-CCcEEEEecC
Q 011732 253 ---LFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDR-KGSIAVLSCS 302 (478)
Q Consensus 253 ---~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~-~gNl~vl~~~ 302 (478)
.+++++.+ ++...+..+...- ..+.+- |++.++++|. .+.|+.+.++
T Consensus 113 ~~g~v~~~~~~-~~~~~~~~~~~~p--NGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 113 DPGSVYRIDPD-GKVTVVADGLGFP--NGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp GSEEEEEEETT-SEEEEEEEEESSE--EEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceEEECCC-CeEEEEecCcccc--cceEECCcchheeecccccceeEEEecc
Confidence 57778777 6667666553221 222222 3446667776 4446666654
No 185
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=41.70 E-value=3.6e+02 Score=30.52 Aligned_cols=36 Identities=8% Similarity=0.203 Sum_probs=31.8
Q ss_pred CCcEEEEEECCCCCceEEEEEEEECC-eeEEEEeeec
Q 011732 53 SGSVLSSFKLELGETGKSMELVRVGH-EQVLVVGTSL 88 (478)
Q Consensus 53 t~~~i~~~~l~~~E~~~s~~~~~l~~-~~~l~VGT~~ 88 (478)
|=+.+++|.+++-..|.||-++...+ ..++++|...
T Consensus 59 TPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~ 95 (670)
T PF10395_consen 59 TPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTE 95 (670)
T ss_pred CcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEee
Confidence 45789999999999999999999886 7899999774
No 186
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=40.93 E-value=3.4e+02 Score=26.18 Aligned_cols=85 Identities=15% Similarity=0.279 Sum_probs=56.4
Q ss_pred EEeCCCCcCEEEEecCCCeEEEEEEeeCCC---------cc--------eeEEEEEe-CCC-------CcEEEEEECCCC
Q 011732 11 KFHLGGTPKKVLYHSESRLLIVMRTELNND---------TC--------SSDICCVD-PLS-------GSVLSSFKLELG 65 (478)
Q Consensus 11 ~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~---------~~--------~s~l~l~d-~~t-------~~~i~~~~l~~~ 65 (478)
+++--.+..+|+|.+.+..++-+..+.+.. +| +=++|+.- +.+ ...+.-+|+|..
T Consensus 55 ~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~ 134 (215)
T PF14761_consen 55 TFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLS 134 (215)
T ss_pred EEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCC
Confidence 345556778999999988888887654321 11 22345554 111 123556789999
Q ss_pred CceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEe
Q 011732 66 ETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 66 E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~ 114 (478)
|.++|++.+.+.|+ |+||+ ..++.+|++..
T Consensus 135 ~~p~ciaCC~~tG~--LlVg~-----------------~~~l~lf~l~~ 164 (215)
T PF14761_consen 135 EPPLCIACCPVTGN--LLVGC-----------------GNKLVLFTLKY 164 (215)
T ss_pred CCCCEEEecCCCCC--EEEEc-----------------CCEEEEEEEEE
Confidence 99999999988774 56674 44778888884
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.08 E-value=1.7e+02 Score=30.65 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=49.7
Q ss_pred eEEEEEEe--CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeE---EEeCCCCcEEEEec
Q 011732 232 MIMLLTAH--FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTA---VVSDRKGSIAVLSC 301 (478)
Q Consensus 232 ~i~sL~~~--~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~---l~aD~~gNl~vl~~ 301 (478)
.|++|.|. |.++.+|++-.||.++. ...-+...+.+-.+...||+++|..+..+ +.+|..-+++.+..
T Consensus 283 siSsl~VS~dGkf~AlGT~dGsVai~~--~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGSVAIYD--AKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCcEEEEE--eceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 46777664 79999999999998875 34567778888888899999999865533 34455555555554
No 188
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.03 E-value=2.4e+02 Score=32.94 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred ceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEE
Q 011732 104 KGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYST 183 (478)
Q Consensus 104 ~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~ 183 (478)
+|+|.+|+.. --.++++.
T Consensus 30 sG~IQlWDYR--------------------------------------------------------------M~tli~rF 47 (1202)
T KOG0292|consen 30 SGVIQLWDYR--------------------------------------------------------------MGTLIDRF 47 (1202)
T ss_pred Cceeeeehhh--------------------------------------------------------------hhhHHhhh
Q ss_pred e-cCCceEEEeeeCCceEEEEeCCe--EEEEeeCCCCcccceeeeecccce--eEEEEEEeCCEEEEeecCCcEEEEEEe
Q 011732 184 T-WPGMVLAICPYLDRYFLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRF--MIMLLTAHFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 184 ~-~~G~V~ai~~~~g~~Ll~avg~~--l~v~~l~~~~~~~L~~~a~~~~~~--~i~sL~~~~n~IlvgD~~~Sv~ll~y~ 258 (478)
+ .+|||..|+-.+.+=|+++-|-. |.||++.. +++-|.-..- ||-.+.-+..+=.+--+.+-=++-.|+
T Consensus 48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~------rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT------RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred hccCCccceeeecCCCCeEEecCCccEEEEEeccc------ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Q ss_pred ccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEe
Q 011732 259 EDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 259 ~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~ 300 (478)
=+..+.+-+. --+..+|+|+.|.. ++.++.+--+..+.+.+
T Consensus 122 wqsr~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 122 WQSRKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred ccCCceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEe
No 189
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=38.82 E-value=4.4e+02 Score=27.98 Aligned_cols=116 Identities=13% Similarity=0.166 Sum_probs=71.2
Q ss_pred EEEEecCCceEEEeeeCC-ceEEEEe-CCeEEEEeeCCCCc-ccceeeeecc-cceeEEEEEEeCCEEEEeecCCcEEEE
Q 011732 180 AYSTTWPGMVLAICPYLD-RYFLASA-GNAFYVCGFPNDNP-QRVRRFAVGR-TRFMIMLLTAHFTRIAVGDCRDGILFY 255 (478)
Q Consensus 180 ~~~~~~~G~V~ai~~~~g-~~Ll~av-g~~l~v~~l~~~~~-~~L~~~a~~~-~~~~i~sL~~~~n~IlvgD~~~Sv~ll 255 (478)
+.+.+.-|.|+++.-..+ .-|+.+. ...+-++++..-+- +.++..++.. ....-+.++.-+.|+++|-+-.||+++
T Consensus 335 ~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 335 TRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIW 414 (459)
T ss_pred eeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEE
Confidence 446778899999985544 3255553 44577777764110 1122222211 112334445568999999999999886
Q ss_pred EEeccCceEEEEecCCCCc-eeEEEEeec-CCeEEEeCCCCcEE
Q 011732 256 SYHEDARKLEQIYCDPSQR-LVADCVLMD-VDTAVVSDRKGSIA 297 (478)
Q Consensus 256 ~y~~~~~~L~~varD~~~~-~vta~~~ld-~~~~l~aD~~gNl~ 297 (478)
. -..++++-+.+-.... .++++.+=. ...++.+|+.+-..
T Consensus 415 ~--v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~ 456 (459)
T KOG0288|consen 415 S--VFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVT 456 (459)
T ss_pred E--ccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceE
Confidence 5 4567788777766665 677777632 33778888866543
No 190
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=38.16 E-value=4.1e+02 Score=26.29 Aligned_cols=111 Identities=10% Similarity=0.056 Sum_probs=74.3
Q ss_pred cCCceEEEeeeCCceEEEE--eCCeEEEEeeCCCCcccceeeeecccce-eEEEEEEeCCEEEEeecCCcEEEEEEeccC
Q 011732 185 WPGMVLAICPYLDRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGRTRF-MIMLLTAHFTRIAVGDCRDGILFYSYHEDA 261 (478)
Q Consensus 185 ~~G~V~ai~~~~g~~Ll~a--vg~~l~v~~l~~~~~~~L~~~a~~~~~~-~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~ 261 (478)
..|-|.+|.--....++++ ...++.+|+.+. +...|+..++... -|.+|++.+-.|+.|-.---+-.|.. ..
T Consensus 100 H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS---~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydi--R~ 174 (307)
T KOG0316|consen 100 HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS---RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDI--RK 174 (307)
T ss_pred ccceeeEEEecCcceEEEeccccceeEEEEccc---CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEe--ec
Confidence 4456777663333324443 356689998875 3355655443222 58899999999999987776655443 33
Q ss_pred ceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 262 RKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 262 ~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
++| ..|+....++++.|- |.+-.|++-.++-++.++...
T Consensus 175 G~l---~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 175 GTL---SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred cee---ehhhcCCcceeEEecCCCCEEEEeeccceeeecccch
Confidence 433 469999999999886 445677888889888887643
No 191
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.74 E-value=1.1e+02 Score=32.31 Aligned_cols=85 Identities=16% Similarity=0.111 Sum_probs=53.8
Q ss_pred EEeeeCCce-EEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEe---CCEEEEeecCCcEEEEEEeccCceEEE
Q 011732 191 AICPYLDRY-FLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH---FTRIAVGDCRDGILFYSYHEDARKLEQ 266 (478)
Q Consensus 191 ai~~~~g~~-Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~---~n~IlvgD~~~Sv~ll~y~~~~~~L~~ 266 (478)
+..+++.+. .++..|++|-+++++.. .. +..+..+-.+.|..-. .++|++||..-+|.++..+...+-+.+
T Consensus 200 afSp~~~GLl~~asl~nkiki~dlet~----~~-vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e 274 (463)
T KOG1645|consen 200 AFSPFNEGLLGLASLGNKIKIMDLETS----CV-VSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLME 274 (463)
T ss_pred ccCccccceeeeeccCceEEEEecccc----ee-eeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhh
Confidence 344666542 35557999999999862 22 3444555455554432 589999999999999888766666665
Q ss_pred EecCCCCceeEEEE
Q 011732 267 IYCDPSQRLVADCV 280 (478)
Q Consensus 267 varD~~~~~vta~~ 280 (478)
+...-....|..+.
T Consensus 275 ~~a~~t~~pv~~i~ 288 (463)
T KOG1645|consen 275 LVANVTINPVHKIA 288 (463)
T ss_pred hhhhhccCcceeec
Confidence 55444444444333
No 192
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=37.60 E-value=6.5e+02 Score=28.49 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=70.1
Q ss_pred ecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCEEEEeecCCcEEEEEEeccC
Q 011732 184 TWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHEDA 261 (478)
Q Consensus 184 ~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~IlvgD~~~Sv~ll~y~~~~ 261 (478)
.+++-|-++...+...|+-+. .+++.+|..++ +.-. .-..+..|.++... .+.++-|-+-+.+-+++= +
T Consensus 99 gH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~-----l~~~-l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~---~ 169 (745)
T KOG0301|consen 99 GHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE-----LVYS-LQGHTASVWAVASLPENTYVTGSADKTIKLWKG---G 169 (745)
T ss_pred ccccceeeeecCCcCceEecccccceEEecchh-----hhcc-cCCcchheeeeeecCCCcEEeccCcceeeeccC---C
Confidence 456677777777666345554 77789998875 3321 22233445555554 467788889999988652 2
Q ss_pred ceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 262 RKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 262 ~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
..+..+.. +.--|..+.+||+..|+.++.+|.|......
T Consensus 170 ~~l~tf~g--HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 170 TLLKTFSG--HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD 208 (745)
T ss_pred chhhhhcc--chhheeeeEEecCCCeEeecCCceEEEEecc
Confidence 22222221 3334677888999999999999999988763
No 193
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=37.00 E-value=4.7e+02 Score=26.64 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=49.5
Q ss_pred eEEEEeeCCCCc-ccceeeeecccce---eEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEE---ecCCCCceeEEE
Q 011732 207 AFYVCGFPNDNP-QRVRRFAVGRTRF---MIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQI---YCDPSQRLVADC 279 (478)
Q Consensus 207 ~l~v~~l~~~~~-~~L~~~a~~~~~~---~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~v---arD~~~~~vta~ 279 (478)
.|.+|+...+.+ -.|+++...+... .-..++..+..|+++|..-++..+... ...|.-+ --...+.|+.+.
T Consensus 96 ~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t--~~~le~vq~wk~He~E~Wta~f 173 (339)
T KOG0280|consen 96 QIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYET--EMVLEKVQTWKVHEFEAWTAKF 173 (339)
T ss_pred eEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecc--eeeeeecccccccceeeeeeec
Confidence 377777765322 2355544333322 233445668889999999999855432 2222221 112234566555
Q ss_pred EeecCCeEEEeCCCCcEEEEec
Q 011732 280 VLMDVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 280 ~~ld~~~~l~aD~~gNl~vl~~ 301 (478)
...+.+.+..+-.+|-|..++.
T Consensus 174 ~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 174 SDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred ccCCCceEEecCCCceEEEEEe
Confidence 5444444444555666666553
No 194
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.76 E-value=2.6e+02 Score=27.61 Aligned_cols=60 Identities=25% Similarity=0.352 Sum_probs=40.7
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCe--eEEEEeeec
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHE--QVLVVGTSL 88 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~--~~l~VGT~~ 88 (478)
|.-++-.-+.++|+..-. .+.|.-+||.|++++-.++|+ --.++|+|. .++ ..+.|-|+.
T Consensus 214 PDGm~ID~eG~L~Va~~n-------g~~V~~~dp~tGK~L~eiklP-t~qitsccF---gGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 214 PDGMTIDTEGNLYVATFN-------GGTVQKVDPTTGKILLEIKLP-TPQITSCCF---GGKNLDILYVTTAA 275 (310)
T ss_pred CCcceEccCCcEEEEEec-------CcEEEEECCCCCcEEEEEEcC-CCceEEEEe---cCCCccEEEEEehh
Confidence 444444555556554432 578999999999999999999 345555554 465 666777764
No 195
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=35.12 E-value=2e+02 Score=28.51 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=26.0
Q ss_pred ECCCCCceEEEEEEEECC-----eeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 61 KLELGETGKSMELVRVGH-----EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 61 ~l~~~E~~~s~~~~~l~~-----~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
.+..--.++||+.++... -..+||||= .|.||+++-.
T Consensus 172 pl~~~t~ITcm~tikk~~~d~~a~scLViGTE----------------~~~i~iLd~~ 213 (257)
T PF14779_consen 172 PLKRQTVITCMATIKKSSADEDAVSCLVIGTE----------------SGEIYILDPQ 213 (257)
T ss_pred CcccCceeEEeeeecccccCCCCcceEEEEec----------------CCeEEEECch
Confidence 344455788998887752 279999986 6778877654
No 196
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=34.61 E-value=5.4e+02 Score=26.69 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=42.8
Q ss_pred eeeEEEeCCCCcC--------EEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCC
Q 011732 7 LNVRKFHLGGTPK--------KVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLEL 64 (478)
Q Consensus 7 l~ir~i~L~~tp~--------ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~ 64 (478)
-.+++|+++..|+ -++.+|+.+.+.|.-.. ....|-++|-.+.+++..+..+.
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-----p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-----PSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-----CCCEEEEEECCCCcEEEEEeCCC
Confidence 3578899988888 99999999988877322 24689999999999999888754
No 197
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.59 E-value=4.9e+02 Score=26.17 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=42.6
Q ss_pred EeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 238 AHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 238 ~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
+++|+|++|-.-..++|+.++....--..++-|... +.+..-.+.+.+-++..++|++++++-
T Consensus 61 vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk--~~a~~d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 61 VVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK--VRAQCDFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred EECCEEEEEEccCcEEEEEecchhheeeeeehhhhc--cceEEcCCCceEEEecCCCcEEEeccc
Confidence 389999999999999999987653322223333222 222222355678888999999999853
No 198
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=34.57 E-value=2.7e+02 Score=28.87 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=47.8
Q ss_pred EEEEecCCCeEEEEEEeeCCC---cceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 20 KVLYHSESRLLIVMRTELNND---TCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 20 ki~y~~~~~~~~v~~~~~~~~---~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
-++||+..+.+.|+.-....+ .....|..+|.+|.+.+.+++|+. .+.||.+- -+++|.|. ++..
T Consensus 242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vs-qd~~P~L~-~~~~-------- 309 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVS-QDDKPLLY-ALSA-------- 309 (342)
T ss_dssp -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEE-SSSS-EEE-EEET--------
T ss_pred eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEc-cCCCcEEE-EEcC--------
Confidence 489998887666665322221 246799999999999999999862 34465543 24456664 3331
Q ss_pred CCCCcCcceEEEEEEEE
Q 011732 97 SGEAESTKGRLIVLCIE 113 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~ 113 (478)
..|-|++|+..
T Consensus 310 ------~~~~l~v~D~~ 320 (342)
T PF06433_consen 310 ------GDGTLDVYDAA 320 (342)
T ss_dssp ------TTTEEEEEETT
T ss_pred ------CCCeEEEEeCc
Confidence 14678888875
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=34.01 E-value=2.4e+02 Score=28.02 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=44.9
Q ss_pred eEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEE
Q 011732 189 VLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSY 257 (478)
Q Consensus 189 V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y 257 (478)
+-|++.-.+- |+++-|.++.+|.+... ...+.+.+|-.+....-..+.|++|---+-|.-+.|
T Consensus 211 igala~~edW-lvCGgGp~lslwhLrss-----e~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 211 IGALAVNEDW-LVCGGGPKLSLWHLRSS-----ESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred eEEEeccCce-EEecCCCceeEEeccCC-----CceEEEecccceeEeeeecceEEEeccccceeeeee
Confidence 5666666666 99999999999999873 334555666677777777888888765555544444
No 200
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=33.59 E-value=2.7e+02 Score=31.45 Aligned_cols=98 Identities=8% Similarity=0.096 Sum_probs=57.8
Q ss_pred eecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecC--CeEEEeCCCCcEEEEecC
Q 011732 225 AVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 225 a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~--~~~l~aD~~gNl~vl~~~ 302 (478)
++......-+.+++.+.+|.+|.-..+++++. ...+.+. .-+.-.....+++..+.. ..+.++-..|-+.+++.+
T Consensus 30 ~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~--R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 30 GFFPARVKLTCVDATEEYLAMGSSAGSVYLYN--RHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred ccCcceEEEEEeecCCceEEEecccceEEEEe--cCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 34445556677777899999999999999974 2222222 212211223344444433 255666778888888876
Q ss_pred CCcccCCCCCccceeeeeeec--CccccEEE
Q 011732 303 DRLEDNASPECNLTPNCAYHM--GEIAVSIR 331 (478)
Q Consensus 303 ~~~~~s~~~~~~L~~~~~fhl--Gd~vt~~~ 331 (478)
.. ..+ .+.-...+|- +..||++.
T Consensus 107 ~~----~p~--~~~~~t~~d~~~~~rVTal~ 131 (726)
T KOG3621|consen 107 KE----LPR--DLDYVTPCDKSHKCRVTALE 131 (726)
T ss_pred cc----CCC--cceeeccccccCCceEEEEE
Confidence 42 122 2444444554 77888775
No 201
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=33.39 E-value=6e+02 Score=26.78 Aligned_cols=72 Identities=10% Similarity=0.049 Sum_probs=42.3
Q ss_pred CCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecc------cceeEEEEEEe----C------CEEEEeec
Q 011732 186 PGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGR------TRFMIMLLTAH----F------TRIAVGDC 248 (478)
Q Consensus 186 ~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~------~~~~i~sL~~~----~------n~IlvgD~ 248 (478)
.|+|+|++.-+=+++.+|- +..|.|.+++.. .-+-....-+ ...++++|.-. + =.++||+-
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGP--avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGP--AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT--EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCC--eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 7999999986644477776 567999999752 2111111111 23355555321 2 36789999
Q ss_pred CCcEEEEEEec
Q 011732 249 RDGILFYSYHE 259 (478)
Q Consensus 249 ~~Sv~ll~y~~ 259 (478)
.-.+..|+..+
T Consensus 164 ~G~v~~fkIlp 174 (395)
T PF08596_consen 164 SGNVLTFKILP 174 (395)
T ss_dssp TSEEEEEEEEE
T ss_pred CCCEEEEEEec
Confidence 98888888765
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.85 E-value=7.6e+02 Score=29.68 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=38.3
Q ss_pred eeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
.-.|+++|...-.++..+.+..+--++++..- +.+...|++|.+ -|++-+|+..
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~-~~~gn~i~AGfa----------------DGsvRvyD~R 1239 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSAD-LVHGNIIAAGFA----------------DGSVRVYDRR 1239 (1387)
T ss_pred eeEEEEEecccceeEeecccCCCccceeeccc-ccCCceEEEeec----------------CCceEEeecc
Confidence 45799999887777777777765555555332 223478888977 5889999987
No 203
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=32.77 E-value=5.5e+02 Score=26.22 Aligned_cols=122 Identities=10% Similarity=0.073 Sum_probs=69.4
Q ss_pred EEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CCEEEEeecCCcEEE
Q 011732 178 RLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVGDCRDGILF 254 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n~IlvgD~~~Sv~l 254 (478)
+.++..++++-|||+...... +++|. +..|.+|.|+++.. +.+..++ .....+-+|.+. ++.-++|-+---+.+
T Consensus 148 ~pv~t~~LPeRvYa~Dv~~pm-~vVata~r~i~vynL~n~~t-e~k~~~S-pLk~Q~R~va~f~d~~~~alGsiEGrv~i 224 (347)
T KOG0647|consen 148 NPVATLQLPERVYAADVLYPM-AVVATAERHIAVYNLENPPT-EFKRIES-PLKWQTRCVACFQDKDGFALGSIEGRVAI 224 (347)
T ss_pred CeeeeeeccceeeehhccCce-eEEEecCCcEEEEEcCCCcc-hhhhhcC-cccceeeEEEEEecCCceEeeeecceEEE
Confidence 457778999999999988777 66665 66699999987432 2332222 123344444443 444477777655554
Q ss_pred EEEecc--CceEE-EEecCCCCc--eeEEE---Eee-cCCeEEEeCCCCcEEEEecC
Q 011732 255 YSYHED--ARKLE-QIYCDPSQR--LVADC---VLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 255 l~y~~~--~~~L~-~varD~~~~--~vta~---~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
.-.+.. ...|. ...|+..+. .|.++ .|. ..++++.+-.+|-+.+++++
T Consensus 225 q~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 225 QYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 433332 23344 334543321 13333 343 34467666677776666654
No 204
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.77 E-value=5.9e+02 Score=28.64 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=66.9
Q ss_pred ecCCceEEEee-eCCceEEEEe--CCeEEEEeeCCCCccccee-----eeecc-c-ceeEEEEEEeCC--EEEEeecCCc
Q 011732 184 TWPGMVLAICP-YLDRYFLASA--GNAFYVCGFPNDNPQRVRR-----FAVGR-T-RFMIMLLTAHFT--RIAVGDCRDG 251 (478)
Q Consensus 184 ~~~G~V~ai~~-~~g~~Ll~av--g~~l~v~~l~~~~~~~L~~-----~a~~~-~-~~~i~sL~~~~n--~IlvgD~~~S 251 (478)
+.+.-|.||+. .++..|+|+. +.+|++|++..-..+++.. .+... . -..|.++..-.+ .|+-|+.-+-
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 45678888887 6666466654 5779999997421111111 11111 1 124566665544 6777888888
Q ss_pred EEEEEEeccCceEEEEecCCCCceeEEEEeecCC-eEEEeCCCCcEEEEecCC
Q 011732 252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 252 v~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~-~~l~aD~~gNl~vl~~~~ 303 (478)
+-|+.=+.....+.+. -+.-.|-++...|++ .+|.+-.+|-|.+.....
T Consensus 195 lr~wDprt~~kimkLr---GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLR---GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred eEEeccccccceeeee---ccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 8775322222233332 233345555555554 788888899888887654
No 205
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=32.52 E-value=8.2e+02 Score=28.11 Aligned_cols=102 Identities=10% Similarity=0.053 Sum_probs=52.6
Q ss_pred CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEe-ecCC--eEEEeCCCCcEEEEecCCCcccCCCCCccce
Q 011732 240 FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVL-MDVD--TAVVSDRKGSIAVLSCSDRLEDNASPECNLT 316 (478)
Q Consensus 240 ~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~-ld~~--~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~ 316 (478)
-.+++.+---+-|-+|. .+.++....-|--....-+-+.+ +|.. ++..+=.+.||-++++.. ++|.-.
T Consensus 608 ~k~v~t~cQDrnirif~--i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s-------gEcvA~ 678 (1080)
T KOG1408|consen 608 SKLVVTVCQDRNIRIFD--IESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS-------GECVAQ 678 (1080)
T ss_pred cceEEEEecccceEEEe--ccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc-------chhhhh
Confidence 34555555555555543 33443333333222222222222 2332 344444567888888754 233211
Q ss_pred eeeeeecCccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEEe
Q 011732 317 PNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIP 373 (478)
Q Consensus 317 ~~~~fhlGd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~p 373 (478)
.|-.+|.||-+.... +-..+|-++-+|.|.+..-
T Consensus 679 ---m~GHsE~VTG~kF~n--------------------DCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 679 ---MTGHSEAVTGVKFLN--------------------DCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred ---hcCcchheeeeeecc--------------------cchhheeecCCceEEEEEC
Confidence 233578888775311 2355788888999977543
No 206
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=32.49 E-value=6.2e+02 Score=26.67 Aligned_cols=121 Identities=12% Similarity=0.221 Sum_probs=0.0
Q ss_pred EEEEeCCe--EEEEeeCCCCcccceeeeecccceeEEEEEEeCC---------EEEEeecC---CcEEEEEEeccCceEE
Q 011732 200 FLASAGNA--FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFT---------RIAVGDCR---DGILFYSYHEDARKLE 265 (478)
Q Consensus 200 Ll~avg~~--l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n---------~IlvgD~~---~Sv~ll~y~~~~~~L~ 265 (478)
|+++..++ |++|+++. +.|..+...+ ...+++..+ .++++|-. .+|.+|+.++....|.
T Consensus 70 lIigTdK~~GL~VYdL~G---k~lq~~~~Gr----~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDG---KELQSLPVGR----PNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp EEEEEETTTEEEEEETTS----EEEEE-SS-----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred eEEEEeCCCCEEEEcCCC---cEEEeecCCC----cceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Q ss_pred EEecCCCC-----ceeEEEEeecCC-----eEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEE
Q 011732 266 QIYCDPSQ-----RLVADCVLMDVD-----TAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIR 331 (478)
Q Consensus 266 ~varD~~~-----~~vta~~~ld~~-----~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~ 331 (478)
.+..-..| ..+..+.+--.. ..++.+++|.+.-+++.. +.++.-.-..+-+|.++..+-.+.
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~----~~~g~v~~~lVR~f~~~sQ~EGCV 214 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTD----DGDGKVSATLVREFKVGSQPEGCV 214 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-----TTSSEEEEEEEEEE-SS-EEEEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEe----CCCCcEeeEEEEEecCCCcceEEE
No 207
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=32.40 E-value=19 Score=25.83 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHhcCCCcceecc-CCCCCCCCCCCHHHHHHHHHHHhhhcC
Q 011732 436 EAVLSFTLGSFDTIKA-SSKLPPSSPIPVNQVVQLLERVHYALN 478 (478)
Q Consensus 436 ~~Ia~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~ 478 (478)
++||+.+|-+..|++. -.+.+.-.+.+.+.|.+.++++.|.-|
T Consensus 3 ~dIA~~agvS~~TVSr~ln~~~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 3 KDIAREAGVSKSTVSRVLNGPPRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHTSSHHHHHHHHTTCSSSTHHHHHHHHHHHHHHTB-SS
T ss_pred HHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 5788888877766664 222345567888899999999999765
No 208
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=32.35 E-value=6.5e+02 Score=28.29 Aligned_cols=104 Identities=12% Similarity=0.125 Sum_probs=53.2
Q ss_pred CceEEEEe-CCeEEEEeeCCCCcccceeeeecc----cceeEEEEE-EeCCEEEEeecCCcEEEEEEeccCceEEEEecC
Q 011732 197 DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGR----TRFMIMLLT-AHFTRIAVGDCRDGILFYSYHEDARKLEQIYCD 270 (478)
Q Consensus 197 g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~----~~~~i~sL~-~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD 270 (478)
|-||+|.+ .+.||.|++..-. ..+++.+. ..+++.++. -.+-+++-|....-.+....+.-.. -....=
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s---~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~--~~~~l~ 357 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLS---ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA--PPALLL 357 (720)
T ss_pred CCeEEEEecCCcEEEEeccccC---cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC--Chhhhh
Confidence 55566654 8889999987521 34444322 234555444 4567777777766665544332111 111222
Q ss_pred CCCceeEEEEeec--CCeEEEeCCCCcEEEEecCCCc
Q 011732 271 PSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCSDRL 305 (478)
Q Consensus 271 ~~~~~vta~~~ld--~~~~l~aD~~gNl~vl~~~~~~ 305 (478)
-+.+.|+++...- ..-++.+-.+.-+.+.+..+..
T Consensus 358 Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 358 GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 2345566665442 2234444444455666654433
No 209
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=32.35 E-value=9.1e+02 Score=28.60 Aligned_cols=63 Identities=14% Similarity=0.023 Sum_probs=39.9
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCC--cEEEEEECCCCCceEEEEEEEECCeeEEEEeee
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSG--SVLSSFKLELGETGKSMELVRVGHEQVLVVGTS 87 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~--~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~ 87 (478)
...+.|.+.+++.+++|...+ .|+|+--.++ =.-..+.|+..+.+.. ..|.-.+...+.|+|.
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~--------~vqLWt~~NYHWYLKqei~~~~~~~~~~-~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLED--------RVQLWTRSNYHWYLKQEIRFSSSESVNF-VKWDPEKPLRLHVLTS 369 (928)
T ss_pred ceeeEEEECCCCCEEEEEecC--------CceEEEeeCCEEEEEEEEEccCCCCCCc-eEECCCCCCEEEEEec
Confidence 467899999999999997631 2777776663 3445566666655443 2343334455666765
No 210
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=30.98 E-value=5.8e+02 Score=25.88 Aligned_cols=117 Identities=14% Similarity=-0.046 Sum_probs=63.9
Q ss_pred EEecCCceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceeeeecc--cc-eeEEEEEEe-CCEEEEeecC-----Cc
Q 011732 182 STTWPGMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGR--TR-FMIMLLTAH-FTRIAVGDCR-----DG 251 (478)
Q Consensus 182 ~~~~~G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~--~~-~~i~sL~~~-~n~IlvgD~~-----~S 251 (478)
....++.+.++..++ ++ +++++...++.++.+.... .+..+... .+ ......++. .+.|++||+- ++
T Consensus 61 ~~~~p~~~~~~~~~d~~g-~Lv~~~~g~~~~~~~~~~~--~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~ 137 (307)
T COG3386 61 VFPSPGGFSSGALIDAGG-RLIACEHGVRLLDPDTGGK--ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKS 137 (307)
T ss_pred EEECCCCcccceeecCCC-eEEEEccccEEEeccCCce--eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCcc
Confidence 356677777777776 35 6777777788888744222 12222111 11 122333332 4788899988 22
Q ss_pred -----EEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCC-CcEEEEecC
Q 011732 252 -----ILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRK-GSIAVLSCS 302 (478)
Q Consensus 252 -----v~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~-gNl~vl~~~ 302 (478)
=.+|++++......++..|..--.-.+.. -|+.++..+|.. +-|+.+.++
T Consensus 138 ~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~S-pDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 138 EERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFS-PDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ccCCcceEEEEcCCCCEEEeecCcEEecCceEEC-CCCCEEEEEeCCCCeEEEEecC
Confidence 25888887544444544443222222222 245588888886 445555554
No 211
>PF09202 Rio2_N: Rio2, N-terminal; InterPro: IPR015285 This N-terminal domain is found in RIO2 kinases, and is structurally homologous to the winged helix (wHTH) domain. It adopts a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding properties to the protein, as per other winged helix domains []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A.
Probab=30.43 E-value=76 Score=25.68 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=32.8
Q ss_pred ecCHHHHHHHHHHHHHHhcCCCCCCcCCCCccccccccCCCCCCceeeHHHHHHHhcCCHHHHHHHHHhc
Q 011732 373 PISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENPVGVPKILDGDMLSQFLELTSTQQEAVLSFT 442 (478)
Q Consensus 373 pi~e~~~~~L~~LQ~~L~~~~~~~~~~gl~~~~~R~~~~p~~~~~~IDGDlle~Fl~L~~~~q~~Ia~~~ 442 (478)
.+++++|+.|..+|..|.+|. ++--++|.++..|+.+.-..+++.+
T Consensus 3 ~L~~~d~rvL~aiE~gmk~hE------------------------~VP~~~I~~~s~l~~~~~~~~L~~L 48 (82)
T PF09202_consen 3 YLSKEDFRVLRAIEMGMKNHE------------------------WVPLELIEKISGLSEGEVEKRLKRL 48 (82)
T ss_dssp T--HHHHHHHHHHHTTTTT-S------------------------SEEHHHHHHHHT--HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcccCCc------------------------cCCHHHHHHHhCcCHHHHHHHHHHH
Confidence 468899999999999777633 5667889999999987777777764
No 212
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=29.93 E-value=66 Score=33.83 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=42.2
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEe
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVG 85 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VG 85 (478)
.-++.+.+||...+++++..+. .|+|+||+|++.+.+.- ++=.|+.-++|. +.+||+-|
T Consensus 223 wdVksvdWHP~kgLiasgskDn-------lVKlWDprSg~cl~tlh----~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDN-------LVKLWDPRSGSCLATLH----GHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred CCcceeccCCccceeEEccCCc-------eeEeecCCCcchhhhhh----hccceEEEEEEcCCCCeeEEc
Confidence 3688999999988888875422 79999999999876632 233345555665 34888866
No 213
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.87 E-value=4.1e+02 Score=32.31 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=59.0
Q ss_pred CceEEEEeCCeEEEEeeCCCCcccceeeeeccc-ceeEEEEEE-----------eCCEEEEeecCCcEEE-EEEeccCce
Q 011732 197 DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRT-RFMIMLLTA-----------HFTRIAVGDCRDGILF-YSYHEDARK 263 (478)
Q Consensus 197 g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~-~~~i~sL~~-----------~~n~IlvgD~~~Sv~l-l~y~~~~~~ 263 (478)
++ .=+.++++|++|++++++. + +.++. ...|.++.. ....+++++.++=+.+ +.+++..+.
T Consensus 91 ~R-aWiTiDn~L~lWny~~~~e--~---~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~ 164 (1311)
T KOG1900|consen 91 GR-AWITIDNNLFLWNYESDNE--L---AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE 164 (1311)
T ss_pred cc-eEEEeCCeEEEEEcCCCCc--c---ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc
Confidence 66 7899999999999998532 2 22221 222333332 2467778887775443 234444433
Q ss_pred EEEEecC----CCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 264 LEQIYCD----PSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 264 L~~varD----~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+.....- .....|.++..-+.+.++.+=++||++=+.|..
T Consensus 165 ~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~ 208 (1311)
T KOG1900|consen 165 LSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQA 208 (1311)
T ss_pred ccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEec
Confidence 3333222 224445555545666777777778999888854
No 214
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=29.53 E-value=2.3e+02 Score=31.43 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=65.4
Q ss_pred ecCCceEEEe--eeCCceEEEEeC-CeEEEEeeCCCCcccceeee-ecccceeEEEEEE---eCCEEEEeecCCcEEEEE
Q 011732 184 TWPGMVLAIC--PYLDRYFLASAG-NAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTA---HFTRIAVGDCRDGILFYS 256 (478)
Q Consensus 184 ~~~G~V~ai~--~~~g~~Ll~avg-~~l~v~~l~~~~~~~L~~~a-~~~~~~~i~sL~~---~~n~IlvgD~~~Sv~ll~ 256 (478)
...|+|++|. +|.-+ ++.++| =.+.+|.-.... .+.= +.+.+-+++++.- .--.++++|.+-=+.++.
T Consensus 396 ~h~g~v~~v~~nPF~~k-~fls~gDW~vriWs~~~~~----~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFYPK-NFLSVGDWTVRIWSEDVIA----SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred ccCcceEeeecCCCccc-eeeeeccceeEeccccCCC----CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 3568999987 45456 444444 447777665211 1111 1222334555543 235677888888887765
Q ss_pred EeccCceEEEEecCCCCceeEEEEeecC--CeEEEeCCCCcEEEEecCC
Q 011732 257 YHEDARKLEQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 257 y~~~~~~L~~varD~~~~~vta~~~ld~--~~~l~aD~~gNl~vl~~~~ 303 (478)
+.. .....+++......+....+... ..+.++|..|+++++++++
T Consensus 471 Ll~--~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 471 LLQ--DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhc--cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 543 33344444433333444444433 3688999999999999865
No 215
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=29.45 E-value=1.7e+02 Score=19.23 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=20.1
Q ss_pred eeEEEEEeCCCCcEEEEEECCCCCceEEE
Q 011732 43 SSDICCVDPLSGSVLSSFKLELGETGKSM 71 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~~~E~~~s~ 71 (478)
..+|-++|+.+++.+.++.. ++.+..+
T Consensus 13 ~~~v~~id~~~~~~~~~i~v--g~~P~~i 39 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPV--GGYPFGV 39 (42)
T ss_pred CCEEEEEECCCCeEEEEEEC--CCCCceE
Confidence 35788899999999888777 3554444
No 216
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=29.27 E-value=1.2e+02 Score=24.18 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=29.5
Q ss_pred CCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEE
Q 011732 14 LGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLS 58 (478)
Q Consensus 14 L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~ 58 (478)
-..|.||++.+|+++-|.++-.-.. --.=.|+|++|++=+.
T Consensus 3 ~~~tqrKvL~DP~SG~Yy~vd~P~Q----p~~k~lfDPETGqYVe 43 (75)
T PF15232_consen 3 YPATQRKVLQDPESGQYYVVDAPVQ----PKTKTLFDPETGQYVE 43 (75)
T ss_pred CCccCccEeecCCCCCEEEEecCCC----cceeeeecCCCCcEEE
Confidence 3468999999999998877754332 2244689999988543
No 217
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=29.23 E-value=3.3e+02 Score=27.65 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=42.9
Q ss_pred eEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
+.|..++|. ++.+..++++. ..++|++..--+.+..+|..+.... . ..-...+-.|.|+.+++.
T Consensus 235 ~~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs~~~~~--~--~~~~~~~~~G~lf~~~~~ 298 (307)
T COG3386 235 GRVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITSARSGM--S--RMLTADPLGGGLFSLRLE 298 (307)
T ss_pred ceEEEECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEEecCCCC--C--ccccccccCceEEEEecc
Confidence 489999999 99999999997 6777766652222455554444322 0 011245778999988887
No 218
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=28.98 E-value=7.3e+02 Score=26.44 Aligned_cols=66 Identities=9% Similarity=0.100 Sum_probs=34.2
Q ss_pred CceEEEeee--CCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEE
Q 011732 187 GMVLAICPY--LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILF 254 (478)
Q Consensus 187 G~V~ai~~~--~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~l 254 (478)
.-|+.|+-- .|.||+.|. .+++.+|.-.. -+.++..+=...-.+-+.|...+..|+.+-.-+++-|
T Consensus 388 nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 388 NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred chhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence 345555544 255444443 56677776443 2224444433444444445555666777666666655
No 219
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=28.67 E-value=6.8e+02 Score=25.97 Aligned_cols=193 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred eEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEE
Q 011732 29 LLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLI 108 (478)
Q Consensus 29 ~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~ 108 (478)
.++|+++ .++++|+|+.|+..+.-|+-.+.-.- -+.+..-+.-..+..+++ -|-|.
T Consensus 42 ~vav~lS-------ngsv~lyd~~tg~~l~~fk~~~~~~N-~vrf~~~ds~h~v~s~ss----------------DG~Vr 97 (376)
T KOG1188|consen 42 AVAVSLS-------NGSVRLYDKGTGQLLEEFKGPPATTN-GVRFISCDSPHGVISCSS----------------DGTVR 97 (376)
T ss_pred eEEEEec-------CCeEEEEeccchhhhheecCCCCccc-ceEEecCCCCCeeEEecc----------------CCeEE
Q ss_pred EEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCc
Q 011732 109 VLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGM 188 (478)
Q Consensus 109 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~ 188 (478)
+|++. +...+-+......-.-|
T Consensus 98 ~wD~R----------------------------------------------------------s~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 98 LWDIR----------------------------------------------------------SQAESARISWTQQSGTP 119 (376)
T ss_pred EEEee----------------------------------------------------------cchhhhheeccCCCCCc
Q ss_pred eEEEeee-CCceEEEE------eCCeEEEEeeCCCCcccceeeeecccce-eEEEEEEe---CCEEEEeecCCcEEEEEE
Q 011732 189 VLAICPY-LDRYFLAS------AGNAFYVCGFPNDNPQRVRRFAVGRTRF-MIMLLTAH---FTRIAVGDCRDGILFYSY 257 (478)
Q Consensus 189 V~ai~~~-~g~~Ll~a------vg~~l~v~~l~~~~~~~L~~~a~~~~~~-~i~sL~~~---~n~IlvgD~~~Sv~ll~y 257 (478)
-.++..= +++ ++++ ....|++|+++. .+.+.+ +..+.+. -|++|.-+ .|+++-|-.--=+.+|.-
T Consensus 120 f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~--~qq~l~-~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 120 FICLDLNCKKN-IIACGTELTRSDASVVLWDVRS--EQQLLR-QLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred ceEeeccCcCC-eEEeccccccCceEEEEEEecc--ccchhh-hhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Q ss_pred eccCceEEEEecCCCCceeEEEEeecCC--eEEEeCCCCcEEEEecCCCccc
Q 011732 258 HEDARKLEQIYCDPSQRLVADCVLMDVD--TAVVSDRKGSIAVLSCSDRLED 307 (478)
Q Consensus 258 ~~~~~~L~~varD~~~~~vta~~~ld~~--~~l~aD~~gNl~vl~~~~~~~~ 307 (478)
..++..=-++.-=.....+-.+.++... .+.+---.+.+.++..+...++
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
No 220
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=28.09 E-value=1.8e+02 Score=30.50 Aligned_cols=64 Identities=11% Similarity=0.178 Sum_probs=45.5
Q ss_pred CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEecCC
Q 011732 240 FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 240 ~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~~ 303 (478)
+.+++++|.-+...++-|+..+....++-.-..++..+++.++. +.+.+++|+.|..+-+....
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 57888999999999998887654344444444455555666664 45899999998887776543
No 221
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=27.13 E-value=1e+03 Score=27.61 Aligned_cols=65 Identities=9% Similarity=0.090 Sum_probs=40.2
Q ss_pred ceEEEeeeCCceEEEEeC-CeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCEEEEeecCCcEEEEE
Q 011732 188 MVLAICPYLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYS 256 (478)
Q Consensus 188 ~V~ai~~~~g~~Ll~avg-~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~IlvgD~~~Sv~ll~ 256 (478)
.-+|++.-.++||++|.. ..|++|+--.-+.+. ++-...-+|+.|.+. +++.++|+....+.|+.
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT----~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKT----ALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred CceEEEecCCceEEEEeCCCcEEeecccchhhhh----cCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 345566556666888874 449999632111111 222345588888865 56777888888887764
No 222
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=27.06 E-value=44 Score=26.82 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=20.6
Q ss_pred ecCHHHHHHHHHHHHHHhcCCCCCCcC
Q 011732 373 PISSEEYELLEAVQARLAIHPLTAPLL 399 (478)
Q Consensus 373 pi~e~~~~~L~~LQ~~L~~~~~~~~~~ 399 (478)
|++|++-++|..||++|...+ |.++
T Consensus 2 ~LSe~E~r~L~eiEr~L~~~D--P~fa 26 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRADD--PRFA 26 (82)
T ss_pred CCCHHHHHHHHHHHHHHHhcC--cHHH
Confidence 789999999999999998843 5443
No 223
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.61 E-value=7.6e+02 Score=25.85 Aligned_cols=59 Identities=8% Similarity=0.072 Sum_probs=36.6
Q ss_pred EEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCC-eEEEeCCCCcEEEEecCC
Q 011732 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 242 ~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~-~~l~aD~~gNl~vl~~~~ 303 (478)
+...|---+.+-+...+.-.=-|++++-| .||..+.|-..+ .++.+-.++.|.++++..
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 55566556666665443322234455555 699888886555 444445578899998864
No 224
>PHA02790 Kelch-like protein; Provisional
Probab=26.43 E-value=8.2e+02 Score=26.21 Aligned_cols=78 Identities=8% Similarity=-0.130 Sum_probs=48.8
Q ss_pred CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCC
Q 011732 206 NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD 285 (478)
Q Consensus 206 ~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~ 285 (478)
+.+..|+... ..+..++....+..-..+.+.+++|+|.-- + .-.|+++.++-..++.=+.+|.-.++..+++.
T Consensus 376 ~~ve~ydp~~---~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG--~--~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~ 448 (480)
T PHA02790 376 TTTEYLLPNH---DQWQFGPSTYYPHYKSCALVFGRRLFLVGR--N--AEFYCESSNTWTLIDDPIYPRDNPELIIVDNK 448 (480)
T ss_pred ccEEEEeCCC---CEEEeCCCCCCccccceEEEECCEEEEECC--c--eEEecCCCCcEeEcCCCCCCccccEEEEECCE
Confidence 3466776654 224544444444444566678888865321 1 34578888888888766777877777777777
Q ss_pred eEEEe
Q 011732 286 TAVVS 290 (478)
Q Consensus 286 ~~l~a 290 (478)
-++++
T Consensus 449 IYviG 453 (480)
T PHA02790 449 LLLIG 453 (480)
T ss_pred EEEEC
Confidence 44443
No 225
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=26.16 E-value=8.9e+02 Score=26.52 Aligned_cols=105 Identities=23% Similarity=0.302 Sum_probs=71.8
Q ss_pred ecCCCeEEEEEEeeC-----CCcceeEEEEEeCCCCcEEEEE-ECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCC
Q 011732 24 HSESRLLIVMRTELN-----NDTCSSDICCVDPLSGSVLSSF-KLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPS 97 (478)
Q Consensus 24 ~~~~~~~~v~~~~~~-----~~~~~s~l~l~d~~t~~~i~~~-~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~ 97 (478)
++..+.|-|+++..+ .....+.|-++| .+++.+.+. .|.++|.+.|+..+ ++...+|-=... .|
T Consensus 279 dE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~---Gd~~Y~VTFrqv-----DP- 348 (521)
T PF09826_consen 279 DEYDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFM---GDRAYLVTFRQV-----DP- 348 (521)
T ss_pred eccCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEEEEEEe---CCeEEEEEEeec-----Cc-
Confidence 445567777776532 234568899998 678888774 78899999987665 555444432221 22
Q ss_pred CCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceE
Q 011732 98 GEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQL 177 (478)
Q Consensus 98 ~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 177 (478)
++++++.. |. +.
T Consensus 349 ---------LfviDLsd--------------------------------------------P~---------------~P 360 (521)
T PF09826_consen 349 ---------LFVIDLSD--------------------------------------------PA---------------NP 360 (521)
T ss_pred ---------eEEEECCC--------------------------------------------CC---------------CC
Confidence 45666651 32 44
Q ss_pred EEEEEEecCCceEEEeeeCCceEEEEeCCe
Q 011732 178 RLAYSTTWPGMVLAICPYLDRYFLASAGNA 207 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~ 207 (478)
+.+.+.+++|-=.-|+++.+. .++|+|..
T Consensus 361 ~vlGeLKIPGfS~YLHP~~e~-~LlGiG~~ 389 (521)
T PF09826_consen 361 KVLGELKIPGFSDYLHPYDEN-HLLGIGKD 389 (521)
T ss_pred ceeeEEECccchhceeECCCC-eEEEEccc
Confidence 678888999998889999887 78898864
No 226
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=26.00 E-value=1e+03 Score=27.07 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=66.1
Q ss_pred cCCceEEEeeeCC-ceEEEEeCC-eEEEEeeCCCCcccceeeeecccceeEEEEE-EeCCEEEEeecCC-cEEEEEEecc
Q 011732 185 WPGMVLAICPYLD-RYFLASAGN-AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT-AHFTRIAVGDCRD-GILFYSYHED 260 (478)
Q Consensus 185 ~~G~V~ai~~~~g-~~Ll~avg~-~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~-~~~n~IlvgD~~~-Sv~ll~y~~~ 260 (478)
+...|.+++.+.+ + ++-|.|- .|..|++.. .. |.. -+....++.+|+ ..++.++|..--+ .+-+++ .+
T Consensus 178 HtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~g--e~-l~~--~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~--~~ 249 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDG--EV-LLE--MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWK--KD 249 (745)
T ss_pred chhheeeeEEecCCC-eEeecCCceEEEEeccC--ce-eee--eeccceEEEEEEecCCCCeEEEecCCceEEEee--cC
Confidence 4568999999987 5 4444433 367777743 23 332 234566788888 5556666655544 444443 22
Q ss_pred CceEEEEecCCCCc-eeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 261 ARKLEQIYCDPSQR-LVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 261 ~~~L~~varD~~~~-~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
.+...- ..|. .+.++.++..+.++++-.+|-+++|....
T Consensus 250 --e~~q~I--~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 250 --ECVQVI--TLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred --ceEEEE--ecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 222221 2232 55677788888899999999999999753
No 227
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=25.97 E-value=9.2e+02 Score=26.58 Aligned_cols=109 Identities=10% Similarity=-0.040 Sum_probs=61.0
Q ss_pred EecCCceEEEeeeCC-ceEEEEeCCeEEEEeeCCCCcccceee-eecccceeEEEEEEeCCEEEEeecCCcEEEEEEecc
Q 011732 183 TTWPGMVLAICPYLD-RYFLASAGNAFYVCGFPNDNPQRVRRF-AVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED 260 (478)
Q Consensus 183 ~~~~G~V~ai~~~~g-~~Ll~avg~~l~v~~l~~~~~~~L~~~-a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~ 260 (478)
-...|+|.++..-+. + .+-++|...++-.|.. +..+-. .|...+..+.+|.+..+-=..+.+.+.+.++. .+
T Consensus 99 ~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~---~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~ik~~~--~~ 172 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLG-CIYSVGADLKVVYILE---KEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQIKVLD--IE 172 (541)
T ss_pred CCCCCcceeeecccccC-ceEecCCceeEEEEec---ccceeeeeeccCCCccceEEEcCCCCEEEeccceEEEEE--cc
Confidence 347899999885443 4 7888888877666665 222222 24445556778877766333455667777754 44
Q ss_pred CceEE-EEecCCCCceeEEEEee-cC---CeEEEeCCCCcEE
Q 011732 261 ARKLE-QIYCDPSQRLVADCVLM-DV---DTAVVSDRKGSIA 297 (478)
Q Consensus 261 ~~~L~-~varD~~~~~vta~~~l-d~---~~~l~aD~~gNl~ 297 (478)
.+++. -.-....+..+.+...+ |. ..+|.+|...-..
T Consensus 173 ~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 173 TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 44333 33334444444444332 32 3667666644333
No 228
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=25.69 E-value=5.6e+02 Score=28.87 Aligned_cols=164 Identities=14% Similarity=0.207 Sum_probs=90.7
Q ss_pred EEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCC
Q 011732 81 VLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPD 160 (478)
Q Consensus 81 ~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (478)
=|.||+.-..+ +....+|-++.|.++.. | -..+|+|= .+
T Consensus 26 di~vG~~~~~~-------n~I~aS~~flAFn~e~~--------------G----------~~lgvlPl----------~~ 64 (1012)
T KOG1445|consen 26 DIPVGNLSCTN-------NGIHASADFLAFNIEGE--------------G----------GKLGVLPL----------TA 64 (1012)
T ss_pred ecccccccccC-------CCcccccceEEEeecCC--------------C----------ceEEEEec----------cc
Confidence 45788887764 55778999999999831 0 01245554 11
Q ss_pred CCCcCCccccccccceEEEEEEEecCCceEEE--eeeCCceEEEEeCC--eEEEEeeCCCCcccce-eee-ecccceeEE
Q 011732 161 DASCDGIKLEETETWQLRLAYSTTWPGMVLAI--CPYLDRYFLASAGN--AFYVCGFPNDNPQRVR-RFA-VGRTRFMIM 234 (478)
Q Consensus 161 ~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai--~~~~g~~Ll~avg~--~l~v~~l~~~~~~~L~-~~a-~~~~~~~i~ 234 (478)
-|++ + +.+-+++- ...-|+.+ .+|.+. |++.... .|.+|.+-.+-++.|. +.. +...+..+-
T Consensus 65 ----~Gr~---~--r~i~~l~~--H~d~VtDl~FspF~D~-LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE 132 (1012)
T KOG1445|consen 65 ----KGRR---T--RDIGILAA--HGDQVTDLGFSPFADE-LLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVE 132 (1012)
T ss_pred ----cCcc---c--cccceeec--ccceeeccCccccchh-hhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEE
Confidence 1221 1 23334431 22334333 366677 6655533 3899998754345452 222 223344444
Q ss_pred EEEEe--CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEe
Q 011732 235 LLTAH--FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 235 sL~~~--~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~ 300 (478)
.+..+ -|-|++..+-.++.++.... ++.+.+++....... ++.-- |...+..++++.||.+|+
T Consensus 133 ~l~fHpTaDgil~s~a~g~v~i~D~st-qk~~~el~~h~d~vQ--Sa~WseDG~llatscKdkqirifD 198 (1012)
T KOG1445|consen 133 CLRFHPTADGILASGAHGSVYITDIST-QKTAVELSGHTDKVQ--SADWSEDGKLLATSCKDKQIRIFD 198 (1012)
T ss_pred EeecccCcCceEEeccCceEEEEEccc-CceeecccCCchhhh--ccccccCCceEeeecCCcceEEeC
Confidence 44433 47788888888888876543 344555544333222 22211 233566779999999997
No 229
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.02 E-value=1.2e+03 Score=27.60 Aligned_cols=67 Identities=9% Similarity=0.069 Sum_probs=46.3
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC---CeeEEEEeeecCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG---HEQVLVVGTSLSS 90 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~---~~~~l~VGT~~~~ 90 (478)
-+.-+.++|-.+.|+.-..|+ +|+++.-.+|.+..++.=+-.|.+..=-+-++. +-+||++.-|++.
T Consensus 173 ~VKGvs~DP~Gky~ASqsdDr-------tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDDR-------TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred cccceEECCccCeeeeecCCc-------eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 467788888888888776544 688888777888877765555555443333333 4589998888765
No 230
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=24.74 E-value=2e+02 Score=20.15 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=22.5
Q ss_pred eEEEEEEeCCEEEEeecCCcEEEEEE
Q 011732 232 MIMLLTAHFTRIAVGDCRDGILFYSY 257 (478)
Q Consensus 232 ~i~sL~~~~n~IlvgD~~~Sv~ll~y 257 (478)
.+..+.+.+|+.+|+|-..++.++..
T Consensus 3 ~a~~v~v~g~yaYva~~~~Gl~IvDI 28 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGNNGLVIVDI 28 (42)
T ss_pred eEEEEEEECCEEEEEeCCCCEEEEEC
Confidence 36778899999999999999998764
No 231
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=24.47 E-value=9.2e+02 Score=26.06 Aligned_cols=75 Identities=21% Similarity=0.166 Sum_probs=47.6
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
-.+.|.+||...++.|+.-+.. -.|-=+|.++-..+.+..|+..-.-.|. +.-.+.+.++.++.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~-----lrifqvDGk~N~~lqS~~l~~fPi~~a~--f~p~G~~~i~~s~r--------- 278 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGT-----LRIFQVDGKVNPKLQSIHLEKFPIQKAE--FAPNGHSVIFTSGR--------- 278 (514)
T ss_pred CceEEEecCCCceEEEecCCCc-----EEEEEecCccChhheeeeeccCccceee--ecCCCceEEEeccc---------
Confidence 4678899999999998875432 2333346666677777777765544332 22245556666644
Q ss_pred CCCCcCcceEEEEEEEEe
Q 011732 97 SGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~ 114 (478)
+-.+|.|++..
T Consensus 279 -------rky~ysyDle~ 289 (514)
T KOG2055|consen 279 -------RKYLYSYDLET 289 (514)
T ss_pred -------ceEEEEeeccc
Confidence 44678888874
No 232
>PRK01742 tolB translocation protein TolB; Provisional
Probab=23.64 E-value=7.7e+02 Score=25.82 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=57.1
Q ss_pred CCceEEEeee-CCceEEEEe----CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEe-ecCCcEEEEEEec
Q 011732 186 PGMVLAICPY-LDRYFLASA----GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVG-DCRDGILFYSYHE 259 (478)
Q Consensus 186 ~G~V~ai~~~-~g~~Ll~av----g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Ilvg-D~~~Sv~ll~y~~ 259 (478)
+++|.+..-- +|++|+.+. +..|+++++.... .+.+............+..+++|+++ +--....++.++.
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~---~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA---RKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc---eEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 3445544433 245455443 1358888876421 11122222222223344456777765 4444566777776
Q ss_pred cCceEEEEecCCCCceeEEEEeecCC--eEEEeCCCCcEEEEecCC
Q 011732 260 DARKLEQIYCDPSQRLVADCVLMDVD--TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~ld~~--~~l~aD~~gNl~vl~~~~ 303 (478)
..+.+..+.... ...++..+-.++ -++++|+.|+..++.++.
T Consensus 280 ~~~~~~~lt~~~--~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 280 NGGTPSQLTSGA--GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CCCCeEeeccCC--CCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 666666554322 123444443333 345678888777777643
No 233
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=23.40 E-value=3.4e+02 Score=28.78 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=21.1
Q ss_pred EecCCceEEEeeeC--CceEEEEeC--CeEEEEeeCC
Q 011732 183 TTWPGMVLAICPYL--DRYFLASAG--NAFYVCGFPN 215 (478)
Q Consensus 183 ~~~~G~V~ai~~~~--g~~Ll~avg--~~l~v~~l~~ 215 (478)
...+..|+.|.--. .. ++++.| .+|.||++.+
T Consensus 313 e~H~dev~~V~WSPh~et-vLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 313 EGHEDEVFQVEWSPHNET-VLASSGTDRRLNVWDLSR 348 (422)
T ss_pred cCCCcceEEEEeCCCCCc-eeEecccCCcEEEEeccc
Confidence 44667788776333 34 666664 4489999875
No 234
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=23.30 E-value=1.1e+03 Score=26.57 Aligned_cols=124 Identities=17% Similarity=0.005 Sum_probs=65.2
Q ss_pred EEEEEecCCceEEEeeeCCceEEEEeCC---eEEEEeeCCCCc-ccceeeeecccce------eEEEE--EEeCCEEEEe
Q 011732 179 LAYSTTWPGMVLAICPYLDRYFLASAGN---AFYVCGFPNDNP-QRVRRFAVGRTRF------MIMLL--TAHFTRIAVG 246 (478)
Q Consensus 179 l~~~~~~~G~V~ai~~~~g~~Ll~avg~---~l~v~~l~~~~~-~~L~~~a~~~~~~------~i~sL--~~~~n~Ilvg 246 (478)
+.+...+.+.|+.+..-.+. .|+..|. .|.||++..... -...+......+. -+++| +..|+++++.
T Consensus 211 kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred ccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 45556666777777655556 5666554 589999986211 0111111111111 23333 4568999999
Q ss_pred ecCCcEEEEEEeccCce--EEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 247 DCRDGILFYSYHEDARK--LEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 247 D~~~Sv~ll~y~~~~~~--L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
..-.+|++|........ ...-+.=.....+-++.--|+.+++.+-.+++.++...+.
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 99889999865432111 1111111222223333333444666666666666665543
No 235
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.23 E-value=7.9e+02 Score=24.49 Aligned_cols=113 Identities=11% Similarity=0.073 Sum_probs=68.4
Q ss_pred EEeCCEEEEeecCCcEEEEEEeccC--ceEEEEecCCCCceeEEEEeecCCeEEEeCC-CCcEEEEecCCCcccCCCCCc
Q 011732 237 TAHFTRIAVGDCRDGILFYSYHEDA--RKLEQIYCDPSQRLVADCVLMDVDTAVVSDR-KGSIAVLSCSDRLEDNASPEC 313 (478)
Q Consensus 237 ~~~~n~IlvgD~~~Sv~ll~y~~~~--~~L~~varD~~~~~vta~~~ld~~~~l~aD~-~gNl~vl~~~~~~~~s~~~~~ 313 (478)
+..+.+|+-.-.-++|-+|..+... +-|.++-.+..|.|=.+-.-.-.+++|++=. +|-+.+.+... +
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~-------g-- 90 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN-------G-- 90 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC-------C--
Confidence 3445666666666677777665543 4566777788888876665444667777644 77777776432 1
Q ss_pred cceeeeeeec-CccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEEecCH
Q 011732 314 NLTPNCAYHM-GEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISS 376 (478)
Q Consensus 314 ~L~~~~~fhl-Gd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~pi~e 376 (478)
+.....+|-. -..||++.- . | ......+.+++++|.|++|.-=++
T Consensus 91 ~w~k~~e~~~h~~SVNsV~w---a---p------------heygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 91 RWTKAYEHAAHSASVNSVAW---A---P------------HEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred chhhhhhhhhhcccceeecc---c---c------------cccceEEEEeeCCCcEEEEEEcCC
Confidence 2222222221 234566632 1 2 123577899999999999887543
No 236
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.84 E-value=1.7e+02 Score=32.47 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=44.4
Q ss_pred eEEEeCCC-Cc-CEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEE
Q 011732 9 VRKFHLGG-TP-KKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSM 71 (478)
Q Consensus 9 ir~i~L~~-tp-~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~ 71 (478)
+.+||..+ .. +.+++.|++++++|+..+ +.|+|.|-.++..+.++.|-..+-++|+
T Consensus 54 lwtip~p~~~v~~sL~W~~DGkllaVg~kd-------G~I~L~Dve~~~~l~~~~~s~e~~is~~ 111 (665)
T KOG4640|consen 54 LWTIPIPGENVTASLCWRPDGKLLAVGFKD-------GTIRLHDVEKGGRLVSFLFSVETDISKG 111 (665)
T ss_pred eEeccCCCCccceeeeecCCCCEEEEEecC-------CeEEEEEccCCCceeccccccccchhee
Confidence 45677555 33 589999999999999752 5899999999999999877777777665
No 237
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=21.39 E-value=3e+02 Score=27.28 Aligned_cols=46 Identities=22% Similarity=0.134 Sum_probs=33.9
Q ss_pred cceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeee
Q 011732 41 TCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS 87 (478)
Q Consensus 41 ~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~ 87 (478)
++...|-++|+..|.++..+.++.--...+ +...++ .+-.|+|.|.
T Consensus 202 TE~~~i~iLd~~af~il~~~~lpsvPv~i~-~~G~~devdyRI~Va~R 248 (257)
T PF14779_consen 202 TESGEIYILDPQAFTILKQVQLPSVPVFIS-VSGQYDEVDYRIVVACR 248 (257)
T ss_pred ecCCeEEEECchhheeEEEEecCCCceEEE-EEeeeeccceEEEEEeC
Confidence 456789999999999999999996555333 346664 5666777765
No 238
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=21.37 E-value=7e+02 Score=23.54 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=47.0
Q ss_pred eEEEeeeC-CceEEEE--eCCeEEEEeeCCCCccccee-eeecccce---eEEEEEEe-CCEEEEeecCCcEEEEEEecc
Q 011732 189 VLAICPYL-DRYFLAS--AGNAFYVCGFPNDNPQRVRR-FAVGRTRF---MIMLLTAH-FTRIAVGDCRDGILFYSYHED 260 (478)
Q Consensus 189 V~ai~~~~-g~~Ll~a--vg~~l~v~~l~~~~~~~L~~-~a~~~~~~---~i~sL~~~-~n~IlvgD~~~Sv~ll~y~~~ 260 (478)
...|+--. |+.|.++ .+++|+.|++..+..+ +.. .-+.+.+. ..-.|.+. .+.|+|++...+ .+.+|+++
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~-~I~~~~p~ 213 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-LSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG-RIVVFDPD 213 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-EEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT-EEEEEETT
T ss_pred ccceEECCcchheeecccccceeEEEeccccccc-eeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC-EEEEECCC
Confidence 34444333 4435554 3677888888754321 221 11222111 34445443 456788887555 36678887
Q ss_pred CceEEEEecCCCCceeEEEEee
Q 011732 261 ARKLEQIYCDPSQRLVADCVLM 282 (478)
Q Consensus 261 ~~~L~~varD~~~~~vta~~~l 282 (478)
+++...-+-+.+ .++++.|-
T Consensus 214 -G~~~~~i~~p~~-~~t~~~fg 233 (246)
T PF08450_consen 214 -GKLLREIELPVP-RPTNCAFG 233 (246)
T ss_dssp -SCEEEEEE-SSS-SEEEEEEE
T ss_pred -ccEEEEEcCCCC-CEEEEEEE
Confidence 545544444444 78888874
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=21.35 E-value=1.2e+03 Score=26.49 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=82.0
Q ss_pred CCceEEEEeCCe-EEEEeeCCCCcccceeeeecccceeEEEEEEe-------CCEEEEeecCCcEEEEEEeccCceEEEE
Q 011732 196 LDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-------FTRIAVGDCRDGILFYSYHEDARKLEQI 267 (478)
Q Consensus 196 ~g~~Ll~avg~~-l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-------~n~IlvgD~~~Sv~ll~y~~~~~~L~~v 267 (478)
.|.||+.+.++. |-+..-..+.+ .+-..-..-++.|-+|... .+.|.|.|--+.++|+..+ +++ +
T Consensus 143 DGqylalG~~nGTIsiRNk~gEek--~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls---G~~--I 215 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNKNGEEK--VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS---GKQ--I 215 (1081)
T ss_pred CCcEEEEeccCceEEeecCCCCcc--eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec---cee--e
Confidence 367788887554 44443222212 1111111234566666553 5889999999999998764 333 3
Q ss_pred ecCCCCce-eEEEE-eecCCeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEEeeeeeccCCCCCcc
Q 011732 268 YCDPSQRL-VADCV-LMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDAL 345 (478)
Q Consensus 268 arD~~~~~-vta~~-~ld~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~~gsl~~~~~~~~~~ 345 (478)
++|..-.. ..++. |.+.+.++.+-.++-+.+|.... -+|-++++ +=+=+....+.
T Consensus 216 gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G---------vrLGTvg~-----~D~WIWtV~~~--------- 272 (1081)
T KOG1538|consen 216 GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG---------VRLGTVGE-----QDSWIWTVQAK--------- 272 (1081)
T ss_pred cccccCCCCchhheeccCCcEEEEccCCCceEEEeecC---------eEEeeccc-----cceeEEEEEEc---------
Confidence 34433222 22333 45667888888888999888642 25555544 32344333332
Q ss_pred ccccccCCCCCcEEEEEeCCCceEEEEec
Q 011732 346 GDCLASFESSQTTIIASTLLGSIVIFIPI 374 (478)
Q Consensus 346 ~~~~~~~~~~~~~il~~T~~GsIg~i~pi 374 (478)
.++..+..|..+|.|.++-.+
T Consensus 273 --------PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 --------PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred --------cCCceEEEEEccCeeehhhhH
Confidence 245667889999999887665
No 240
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.15 E-value=1.4e+03 Score=26.84 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=28.5
Q ss_pred EEEEEEecCCceEEEeeeCC-ce-EEEEeCCeEEEEeeCC
Q 011732 178 RLAYSTTWPGMVLAICPYLD-RY-FLASAGNAFYVCGFPN 215 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~~g-~~-Ll~avg~~l~v~~l~~ 215 (478)
+...+..-++||+++.-..+ +. |.++.-+.|.+|.+..
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG 202 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC
Confidence 45556678899999987664 32 4677778899999985
No 241
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=20.96 E-value=1.1e+03 Score=25.91 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=64.0
Q ss_pred EEEEEecCCceEEEee--eCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CCEEEEeecCCcEEE
Q 011732 179 LAYSTTWPGMVLAICP--YLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVGDCRDGILF 254 (478)
Q Consensus 179 l~~~~~~~G~V~ai~~--~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n~IlvgD~~~Sv~l 254 (478)
-+.+.+++..|.+.+. -..+.++.+....|++|+.... +.. +.+..+.++.+.-+ |..++||.-.-=+..
T Consensus 252 svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~ 325 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----VTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQC 325 (545)
T ss_pred EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC----eee--eeeecccceEEEEcCCCcEEEEEcCCceEEE
Confidence 3445677777777663 3357344456888999998763 222 12345556666654 568999988888888
Q ss_pred EEEeccCceEEEEecCCCCceeEEEE
Q 011732 255 YSYHEDARKLEQIYCDPSQRLVADCV 280 (478)
Q Consensus 255 l~y~~~~~~L~~varD~~~~~vta~~ 280 (478)
|.---.+-++..++.|..|..+....
T Consensus 326 FD~ALspi~~qLlsEd~~P~~~L~Ls 351 (545)
T PF11768_consen 326 FDMALSPIKMQLLSEDATPKSTLQLS 351 (545)
T ss_pred EEeecCccceeeccccCCCccEEeee
Confidence 75544566788888898888875544
No 242
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=20.92 E-value=8.8e+02 Score=24.55 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=95.8
Q ss_pred CCCCCeeeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeC-CCCcEEEEEECCCCCceEEEEEEEECCee
Q 011732 2 VHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDP-LSGSVLSSFKLELGETGKSMELVRVGHEQ 80 (478)
Q Consensus 2 ~~~~~l~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~-~t~~~i~~~~l~~~E~~~s~~~~~l~~~~ 80 (478)
...+.|...++|.......|.+..+..-|+|... ..-++=-|. +||+.... ..+ ++.-.-+..+.+.++.
T Consensus 3 ~~~~~W~~v~l~t~~~l~dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~-~~~-~~~~~~l~~I~f~~~~ 73 (302)
T PF14870_consen 3 ASGNSWQQVSLPTDKPLLDVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSL-DLD-NPFDYHLNSISFDGNE 73 (302)
T ss_dssp -SS--EEEEE-S-SS-EEEEEESSSS-EEEEETT-------TEEEEESSTTSS-EE------S------EEEEEEEETTE
T ss_pred ccCCCcEEeecCCCCceEEEEEecCCEEEEEecC-------CEEEEECCCCcccccccc-CCC-ccceeeEEEEEecCCc
Confidence 3567899999999999999999988888888631 111222232 45665442 111 1212233445565666
Q ss_pred EEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCC
Q 011732 81 VLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPD 160 (478)
Q Consensus 81 ~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (478)
-++||.. | ++|.-. |
T Consensus 74 g~ivG~~-----------------g--~ll~T~----------------------------------------------D 88 (302)
T PF14870_consen 74 GWIVGEP-----------------G--LLLHTT----------------------------------------------D 88 (302)
T ss_dssp EEEEEET-----------------T--EEEEES----------------------------------------------S
T ss_pred eEEEcCC-----------------c--eEEEec----------------------------------------------C
Confidence 7778843 2 233332 1
Q ss_pred CCCcCCccccccccceEEEEE-EEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEe
Q 011732 161 DASCDGIKLEETETWQLRLAY-STTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH 239 (478)
Q Consensus 161 ~~~~~g~~~~~~~~~~l~l~~-~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~ 239 (478)
+| ...+.+. ...++|..+.|..+......++. ..=.+|.=.+. .+..+.+.. ...-.+..+...
T Consensus 89 ----gG--------~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~Dg-G~tW~~~~~-~~~gs~~~~~r~ 153 (302)
T PF14870_consen 89 ----GG--------KTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDG-GKTWQAVVS-ETSGSINDITRS 153 (302)
T ss_dssp ----TT--------SS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESST-TSSEEEEE--S----EEEEEE-
T ss_pred ----CC--------CCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCC-CCCeeEccc-CCcceeEeEEEC
Confidence 11 1233332 33567777778777665333332 22234443332 223443221 222234444433
Q ss_pred --CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEe
Q 011732 240 --FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 240 --~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~ 300 (478)
+.+++|+ .++-++..+++........-|. .++.+.++.|-.++.+....+.|.|+.-+
T Consensus 154 ~dG~~vavs--~~G~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~~~Gg~~~~s~ 213 (302)
T PF14870_consen 154 SDGRYVAVS--SRGNFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWMLARGGQIQFSD 213 (302)
T ss_dssp TTS-EEEEE--TTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred CCCcEEEEE--CcccEEEEecCCCccceEEccC-ccceehhceecCCCCEEEEeCCcEEEEcc
Confidence 4555565 7777777887766667776666 55788888887666555556888877666
No 243
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=20.54 E-value=9.7e+02 Score=27.82 Aligned_cols=62 Identities=5% Similarity=0.007 Sum_probs=38.1
Q ss_pred eCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEec
Q 011732 195 YLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHE 259 (478)
Q Consensus 195 ~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~ 259 (478)
+++. ++++....|++++++-. +-|-.++.-++....+++-. .++.++++-.-.-+++.+=++
T Consensus 242 ~rn~-lfi~~prellv~dle~~--~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 242 WRNI-LFITFPRELLVFDLEYE--CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhce-EEEEeccceEEEcchhh--ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 4566 88999999999999873 33544444444444444433 357788876655555544333
No 244
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=20.51 E-value=1.2e+03 Score=25.84 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=49.3
Q ss_pred CCCeeeEEEeCCC---CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeC------CCCcEEEEEECCCCCceEEEEEE
Q 011732 4 NKRLNVRKFHLGG---TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDP------LSGSVLSSFKLELGETGKSMELV 74 (478)
Q Consensus 4 ~~~l~ir~i~L~~---tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~------~t~~~i~~~~l~~~E~~~s~~~~ 74 (478)
.++|+++. .|+. ..|.+++||....++.+..+ +.|+++.. ....+..-+.|...|-+. +|++
T Consensus 281 ~k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed-------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPV-l~v~ 351 (577)
T KOG0642|consen 281 TKKWNIKF-TLRSHDDCIRALAFHPSEPVLITASED-------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPV-LCVV 351 (577)
T ss_pred heecceee-eeecchhhhhhhhcCCCCCeEEEeccc-------cchhhhhhcccCCccccceeeeEEEecccCce-EEEE
Confidence 35688876 6665 47788899988888877542 34444432 113344456666666553 2333
Q ss_pred EECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 75 RVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 75 ~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
.....+++.-|+. -|.|..|.+.
T Consensus 352 v~~n~~~~ysgg~----------------Dg~I~~w~~p 374 (577)
T KOG0642|consen 352 VPSNGEHCYSGGI----------------DGTIRCWNLP 374 (577)
T ss_pred ecCCceEEEeecc----------------CceeeeeccC
Confidence 3344444444433 4677888776
No 245
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=20.47 E-value=1.5e+03 Score=26.93 Aligned_cols=119 Identities=11% Similarity=0.128 Sum_probs=60.6
Q ss_pred eEEEEEEEe-cCCceEEEeeeCCceEEEEeCCeE-----------EEEeeCCCCcccceeeeecccceeEEEEEEeCCEE
Q 011732 176 QLRLAYSTT-WPGMVLAICPYLDRYFLASAGNAF-----------YVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRI 243 (478)
Q Consensus 176 ~l~l~~~~~-~~G~V~ai~~~~g~~Ll~avg~~l-----------~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~I 243 (478)
.++.+|+.+ ..|.+.++.- +|. +++++|-.. .||+++. =+.|.|+.+...|-++.-+=..-.++
T Consensus 206 s~~~iht~~aHs~siSDfDv-~GN-lLitCG~S~R~~~l~~D~FvkVYDLRm--mral~PI~~~~~P~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 206 SFETIHTFDAHSGSISDFDV-QGN-LLITCGYSMRRYNLAMDPFVKVYDLRM--MRALSPIQFPYGPQFLRFHPSLTTRL 281 (1118)
T ss_pred cCceeeeeeccccceeeeec-cCC-eEEEeecccccccccccchhhhhhhhh--hhccCCcccccCchhhhhcccccceE
Confidence 456667666 3567766653 355 666666554 4555543 12355555443332222222233455
Q ss_pred EEeecCCcEEEEE---EeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEe
Q 011732 244 AVGDCRDGILFYS---YHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 244 lvgD~~~Sv~ll~---y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~ 300 (478)
+|.--.-.+.+.. +..-. .-..--++....+++..+- ..+.+..+|..|++.++.
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~--~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPP--AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccceeeccccccCCCc--cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 5544444444443 21110 1111124444445555553 344788889999999887
No 246
>PHA02790 Kelch-like protein; Provisional
Probab=20.38 E-value=1.1e+03 Score=25.33 Aligned_cols=81 Identities=5% Similarity=-0.171 Sum_probs=47.0
Q ss_pred eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEE-eecCCc-EEEEEEeccCceEEEEecCCCCceeEEEEeecC
Q 011732 207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV-GDCRDG-ILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV 284 (478)
Q Consensus 207 ~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Ilv-gD~~~S-v~ll~y~~~~~~L~~varD~~~~~vta~~~ld~ 284 (478)
.+..|+... .+ +..++....+-.-....+.+++|+| |-...+ -.+..|++..++-..++.=+.++.-.++..+++
T Consensus 332 sve~ydp~~--n~-W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~ 408 (480)
T PHA02790 332 SVERWFHGD--AA-WVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR 408 (480)
T ss_pred ceEEEECCC--Ce-EEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECC
Confidence 356665443 12 4444433333333455677888864 433221 235568898888888877777777766666676
Q ss_pred CeEEEe
Q 011732 285 DTAVVS 290 (478)
Q Consensus 285 ~~~l~a 290 (478)
.-++.+
T Consensus 409 ~IYv~G 414 (480)
T PHA02790 409 RLFLVG 414 (480)
T ss_pred EEEEEC
Confidence 645544
Done!