Query 011732
Match_columns 478
No_of_seqs 127 out of 589
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 14:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 100.0 9.8E-69 3.4E-73 620.9 45.0 386 1-473 722-1154(1158)
2 3mmy_A MRNA export factor; mRN 98.2 0.00092 3.1E-08 64.8 26.2 195 16-303 40-247 (368)
3 3jrp_A Fusion protein of prote 98.2 0.0036 1.2E-07 60.9 30.7 201 16-303 12-240 (379)
4 1gxr_A ESG1, transducin-like e 98.1 0.0032 1.1E-07 60.3 27.3 231 15-372 97-334 (337)
5 2ovr_B FBW7, F-BOX/WD repeat p 98.0 0.0069 2.4E-07 61.5 30.5 113 184-303 277-391 (445)
6 1yfq_A Cell cycle arrest prote 98.0 0.00087 3E-08 64.8 22.4 200 16-303 12-225 (342)
7 3zwl_B Eukaryotic translation 98.0 0.0034 1.1E-07 60.8 26.3 196 17-302 34-248 (369)
8 1k8k_C P40, ARP2/3 complex 41 98.0 0.012 4E-07 57.3 30.3 201 16-303 9-233 (372)
9 1gxr_A ESG1, transducin-like e 98.0 0.012 4.1E-07 56.1 30.3 201 9-303 45-255 (337)
10 3v7d_B Cell division control p 97.9 0.014 4.6E-07 59.4 30.2 215 17-303 164-381 (464)
11 1got_B GT-beta; complex (GTP-b 97.9 0.014 4.9E-07 57.2 29.4 195 17-303 57-257 (340)
12 4aez_A CDC20, WD repeat-contai 97.9 0.013 4.4E-07 58.8 29.5 241 15-380 134-385 (401)
13 1yfq_A Cell cycle arrest prote 97.9 0.0016 5.4E-08 63.0 21.7 207 13-303 54-282 (342)
14 3i2n_A WD repeat-containing pr 97.9 0.0026 8.8E-08 61.6 23.0 203 14-303 17-243 (357)
15 3gre_A Serine/threonine-protei 97.9 0.0073 2.5E-07 60.9 27.2 206 11-303 107-359 (437)
16 1pgu_A Actin interacting prote 97.9 0.013 4.4E-07 61.3 29.9 236 15-303 18-283 (615)
17 3mkq_A Coatomer beta'-subunit; 97.9 0.0065 2.2E-07 66.4 28.2 196 16-303 14-217 (814)
18 3mmy_A MRNA export factor; mRN 97.9 0.0024 8E-08 61.9 22.1 201 15-303 86-304 (368)
19 1r5m_A SIR4-interacting protei 97.8 0.0049 1.7E-07 60.9 24.6 206 17-302 110-318 (425)
20 1p22_A F-BOX/WD-repeat protein 97.8 0.019 6.6E-07 58.1 29.6 186 22-303 138-325 (435)
21 3odt_A Protein DOA1; ubiquitin 97.8 0.022 7.4E-07 53.8 29.8 191 17-303 20-214 (313)
22 1r5m_A SIR4-interacting protei 97.8 0.0029 9.9E-08 62.6 22.6 194 16-303 150-361 (425)
23 3vl1_A 26S proteasome regulato 97.8 0.0011 3.8E-08 66.3 19.3 191 18-303 59-278 (420)
24 1l0q_A Surface layer protein; 97.8 0.033 1.1E-06 54.8 31.3 199 8-302 24-232 (391)
25 1sq9_A Antiviral protein SKI8; 97.8 0.0059 2E-07 60.3 24.2 115 185-303 185-322 (397)
26 1p22_A F-BOX/WD-repeat protein 97.8 0.033 1.1E-06 56.4 30.2 171 44-303 193-365 (435)
27 4h5i_A Guanine nucleotide-exch 97.8 0.0038 1.3E-07 62.4 22.7 199 18-304 136-344 (365)
28 2ynn_A Coatomer subunit beta'; 97.8 0.027 9.2E-07 54.2 27.8 195 16-302 14-216 (304)
29 4ery_A WD repeat-containing pr 97.8 0.024 8.2E-07 54.3 27.4 193 17-303 25-223 (312)
30 3i2n_A WD repeat-containing pr 97.7 0.0017 5.9E-08 62.8 18.9 193 24-303 126-353 (357)
31 3k26_A Polycomb protein EED; W 97.7 0.016 5.4E-07 56.0 25.5 200 16-303 70-318 (366)
32 3jrp_A Fusion protein of prote 97.7 0.0053 1.8E-07 59.8 22.1 202 17-303 57-287 (379)
33 4a11_B DNA excision repair pro 97.7 0.013 4.6E-07 57.4 25.1 198 16-303 44-276 (408)
34 4aez_A CDC20, WD repeat-contai 97.7 0.032 1.1E-06 55.8 28.2 173 44-302 113-292 (401)
35 3lrv_A PRE-mRNA-splicing facto 97.7 0.0014 4.7E-08 64.5 17.4 200 9-301 117-331 (343)
36 3ow8_A WD repeat-containing pr 97.7 0.012 4.1E-07 57.5 24.0 199 9-302 115-320 (321)
37 3f3f_A Nucleoporin SEH1; struc 97.6 0.021 7.1E-07 54.2 24.8 206 17-303 13-249 (351)
38 1got_B GT-beta; complex (GTP-b 97.6 0.011 3.7E-07 58.0 23.3 114 184-302 182-300 (340)
39 3jro_A Fusion protein of prote 97.6 0.022 7.6E-07 62.7 28.1 200 17-303 11-238 (753)
40 3vl1_A 26S proteasome regulato 97.6 0.042 1.4E-06 54.6 27.7 215 16-303 140-365 (420)
41 3vu4_A KMHSV2; beta-propeller 97.6 0.02 6.9E-07 56.6 25.1 187 16-302 20-226 (355)
42 3ow8_A WD repeat-containing pr 97.6 0.028 9.6E-07 54.8 25.7 190 18-302 83-278 (321)
43 1pgu_A Actin interacting prote 97.6 0.024 8.3E-07 59.2 26.8 284 14-373 252-570 (615)
44 3zwl_B Eukaryotic translation 97.6 0.0083 2.8E-07 58.0 21.6 210 8-303 108-346 (369)
45 1erj_A Transcriptional repress 97.6 0.079 2.7E-06 53.0 30.5 199 13-303 62-287 (393)
46 3ei3_B DNA damage-binding prot 97.5 0.0083 2.8E-07 59.3 20.9 197 16-303 74-282 (383)
47 4gqb_B Methylosome protein 50; 97.5 0.021 7.3E-07 56.6 23.7 114 183-302 124-245 (344)
48 1vyh_C Platelet-activating fac 97.5 0.025 8.6E-07 57.2 24.4 192 17-302 110-326 (410)
49 1k8k_C P40, ARP2/3 complex 41 97.5 0.024 8.2E-07 55.0 23.3 201 16-303 53-274 (372)
50 1sq9_A Antiviral protein SKI8; 97.5 0.0073 2.5E-07 59.6 19.7 113 186-302 233-394 (397)
51 1vyh_C Platelet-activating fac 97.5 0.03 1E-06 56.6 24.6 191 17-302 152-368 (410)
52 1erj_A Transcriptional repress 97.5 0.061 2.1E-06 53.8 26.6 194 18-302 126-340 (393)
53 3vgz_A Uncharacterized protein 97.5 0.087 3E-06 50.7 28.1 205 8-302 81-302 (353)
54 3k26_A Polycomb protein EED; W 97.5 0.0032 1.1E-07 61.0 16.4 233 9-301 108-364 (366)
55 3bws_A Protein LP49; two-domai 97.4 0.044 1.5E-06 54.8 25.2 206 9-302 204-431 (433)
56 2vdu_B TRNA (guanine-N(7)-)-me 97.4 0.12 4.2E-06 52.4 28.8 124 176-303 139-271 (450)
57 1ri6_A Putative isomerase YBHE 97.4 0.051 1.7E-06 51.9 24.5 233 8-332 76-330 (343)
58 4g56_B MGC81050 protein; prote 97.4 0.03 1E-06 55.5 23.4 233 17-372 96-340 (357)
59 2ovr_B FBW7, F-BOX/WD repeat p 97.4 0.13 4.6E-06 51.8 30.0 111 184-303 197-308 (445)
60 4gqb_B Methylosome protein 50; 97.4 0.051 1.7E-06 53.8 24.7 193 17-302 84-288 (344)
61 1pby_B Quinohemoprotein amine 97.4 0.011 3.7E-07 56.6 18.8 93 8-113 23-123 (337)
62 2pbi_B Guanine nucleotide-bind 97.4 0.13 4.5E-06 50.6 28.3 113 185-302 195-314 (354)
63 3odt_A Protein DOA1; ubiquitin 97.4 0.099 3.4E-06 49.1 27.0 110 184-300 57-171 (313)
64 4g56_B MGC81050 protein; prote 97.4 0.0061 2.1E-07 60.6 17.3 203 17-302 44-257 (357)
65 2vdu_B TRNA (guanine-N(7)-)-me 97.3 0.041 1.4E-06 56.0 23.8 204 13-302 147-390 (450)
66 3sfz_A APAF-1, apoptotic pepti 97.3 0.097 3.3E-06 60.3 28.5 150 17-257 617-772 (1249)
67 3mkq_A Coatomer beta'-subunit; 97.3 0.24 8.1E-06 53.9 30.1 204 9-303 48-259 (814)
68 4gga_A P55CDC, cell division c 97.2 0.21 7E-06 50.2 29.4 178 44-302 125-309 (420)
69 2ymu_A WD-40 repeat protein; u 97.2 0.25 8.7E-06 51.2 29.0 187 17-302 346-538 (577)
70 3fm0_A Protein CIAO1; WDR39,SG 97.2 0.062 2.1E-06 52.7 22.9 195 17-301 18-223 (345)
71 3gre_A Serine/threonine-protei 97.2 0.0093 3.2E-07 60.1 17.2 75 16-113 215-291 (437)
72 1l0q_A Surface layer protein; 97.2 0.1 3.5E-06 51.2 24.6 199 8-303 66-275 (391)
73 2pm7_B Protein transport prote 97.2 0.14 4.9E-06 48.8 24.6 117 185-303 98-238 (297)
74 4h5i_A Guanine nucleotide-exch 97.2 0.22 7.6E-06 49.3 29.6 176 180-387 170-360 (365)
75 2pbi_B Guanine nucleotide-bind 97.2 0.041 1.4E-06 54.3 20.9 192 18-299 157-353 (354)
76 4ery_A WD repeat-containing pr 97.2 0.18 6.3E-06 47.9 25.4 194 17-302 67-267 (312)
77 3bws_A Protein LP49; two-domai 97.1 0.24 8.3E-06 49.2 29.4 113 182-302 249-389 (433)
78 3vgz_A Uncharacterized protein 97.1 0.1 3.6E-06 50.1 22.9 209 9-302 34-261 (353)
79 1nr0_A Actin interacting prote 97.1 0.098 3.3E-06 55.8 24.4 119 180-301 485-609 (611)
80 2hes_X YDR267CP; beta-propelle 97.1 0.24 8.2E-06 48.1 28.3 116 184-302 151-279 (330)
81 2xyi_A Probable histone-bindin 97.1 0.059 2E-06 54.6 21.3 212 9-303 122-353 (430)
82 2xzm_R RACK1; ribosome, transl 97.0 0.19 6.4E-06 49.0 24.1 193 17-303 78-285 (343)
83 2aq5_A Coronin-1A; WD40 repeat 97.0 0.021 7.2E-07 57.0 17.4 199 16-302 132-341 (402)
84 2aq5_A Coronin-1A; WD40 repeat 97.0 0.04 1.4E-06 55.0 19.5 139 184-332 174-321 (402)
85 3dw8_B Serine/threonine-protei 97.0 0.12 4E-06 51.7 22.9 117 184-302 175-314 (447)
86 1q7f_A NHL, brain tumor CG1071 97.0 0.25 8.4E-06 46.4 23.7 112 188-303 165-280 (286)
87 3fm0_A Protein CIAO1; WDR39,SG 97.0 0.31 1.1E-05 47.6 30.0 249 17-375 63-335 (345)
88 4a11_B DNA excision repair pro 97.0 0.042 1.5E-06 53.8 18.8 157 15-258 99-275 (408)
89 3dsm_A Uncharacterized protein 97.0 0.051 1.7E-06 53.3 19.3 58 9-73 77-138 (328)
90 1ri6_A Putative isomerase YBHE 96.9 0.29 1E-05 46.4 29.0 208 8-302 30-261 (343)
91 3jro_A Fusion protein of prote 96.9 0.024 8.4E-07 62.4 18.1 202 17-303 55-285 (753)
92 3v7d_B Cell division control p 96.8 0.33 1.1E-05 48.9 24.4 167 44-298 290-458 (464)
93 4e54_B DNA damage-binding prot 96.8 0.014 4.7E-07 59.4 13.5 202 13-303 117-327 (435)
94 2ymu_A WD-40 repeat protein; u 96.7 0.21 7.2E-06 51.8 22.9 186 16-299 386-576 (577)
95 3scy_A Hypothetical bacterial 96.7 0.37 1.3E-05 46.9 23.5 94 189-283 261-361 (361)
96 4aow_A Guanine nucleotide-bind 96.7 0.21 7.2E-06 47.5 20.8 109 186-303 171-286 (340)
97 2oaj_A Protein SNI1; WD40 repe 96.6 0.16 5.4E-06 57.4 22.3 196 12-303 14-242 (902)
98 3dwl_C Actin-related protein 2 96.6 0.079 2.7E-06 51.8 17.6 172 15-258 100-280 (377)
99 2pm9_A Protein WEB1, protein t 96.6 0.018 6E-07 57.1 12.4 211 12-302 64-293 (416)
100 2iwa_A Glutamine cyclotransfer 96.5 0.48 1.6E-05 45.7 22.0 167 8-264 11-184 (266)
101 2ynn_A Coatomer subunit beta'; 96.5 0.59 2E-05 44.6 29.8 203 8-302 47-258 (304)
102 3frx_A Guanine nucleotide-bind 96.5 0.62 2.1E-05 44.8 26.3 190 17-303 67-267 (319)
103 4aow_A Guanine nucleotide-bind 96.5 0.3 1E-05 46.4 20.3 112 184-302 213-336 (340)
104 3dsm_A Uncharacterized protein 96.4 0.44 1.5E-05 46.4 21.3 192 13-302 41-252 (328)
105 3iz6_a 40S ribosomal protein R 96.4 0.13 4.6E-06 51.0 17.5 116 184-303 247-375 (380)
106 3dm0_A Maltose-binding peripla 96.3 0.83 2.8E-05 49.2 25.1 194 17-303 432-632 (694)
107 3ei3_B DNA damage-binding prot 96.3 0.86 2.9E-05 44.5 26.2 155 15-259 118-282 (383)
108 4ggc_A P55CDC, cell division c 96.3 0.69 2.4E-05 43.3 28.5 193 20-302 30-229 (318)
109 1jmx_B Amine dehydrogenase; ox 96.3 0.34 1.2E-05 46.2 19.7 96 8-113 33-133 (349)
110 2pm9_A Protein WEB1, protein t 96.3 0.051 1.7E-06 53.7 14.1 113 186-304 214-338 (416)
111 3iz6_a 40S ribosomal protein R 96.3 0.42 1.4E-05 47.3 20.7 113 185-302 204-328 (380)
112 3lrv_A PRE-mRNA-splicing facto 96.3 0.68 2.3E-05 44.8 21.9 178 46-303 106-292 (343)
113 3vu4_A KMHSV2; beta-propeller 96.2 1 3.5E-05 44.1 25.5 104 198-303 148-271 (355)
114 2oaj_A Protein SNI1; WD40 repe 96.2 0.63 2.1E-05 52.4 23.9 111 184-302 56-181 (902)
115 3bg1_A Protein SEC13 homolog; 96.2 0.5 1.7E-05 45.4 20.3 201 17-303 15-247 (316)
116 3ei3_A DNA damage-binding prot 96.2 2.6 8.8E-05 49.0 29.2 114 184-303 826-955 (1158)
117 2pm7_B Protein transport prote 96.2 0.92 3.1E-05 43.0 22.5 105 197-302 170-284 (297)
118 3sfz_A APAF-1, apoptotic pepti 96.1 0.49 1.7E-05 54.3 23.0 65 235-302 847-912 (1249)
119 3mbr_X Glutamine cyclotransfer 96.0 1.1 3.7E-05 42.7 22.4 167 9-266 12-184 (243)
120 2xyi_A Probable histone-bindin 96.0 0.71 2.4E-05 46.5 21.3 127 175-303 117-263 (430)
121 3dwl_C Actin-related protein 2 95.9 0.064 2.2E-06 52.5 12.5 204 17-302 57-280 (377)
122 3dw8_B Serine/threonine-protei 95.9 0.18 6.1E-06 50.3 15.7 70 17-113 179-257 (447)
123 4e54_B DNA damage-binding prot 95.8 0.073 2.5E-06 53.9 12.6 113 184-303 162-282 (435)
124 3f3f_A Nucleoporin SEH1; struc 95.7 1.4 4.6E-05 41.3 25.6 116 186-303 167-337 (351)
125 3hfq_A Uncharacterized protein 95.6 1.7 5.7E-05 41.8 24.2 168 18-270 143-328 (347)
126 3nol_A Glutamine cyclotransfer 95.6 1.7 6E-05 41.7 24.7 168 9-267 34-207 (262)
127 1nr0_A Actin interacting prote 95.5 1 3.5E-05 47.7 21.1 194 17-302 192-396 (611)
128 3u4y_A Uncharacterized protein 95.4 1.9 6.5E-05 40.8 23.2 212 8-303 75-304 (331)
129 2j04_A TAU60, YPL007P, hypothe 95.4 0.9 3.1E-05 48.7 19.5 194 15-301 85-295 (588)
130 2hqs_A Protein TOLB; TOLB, PAL 95.4 2.1 7E-05 43.1 21.6 109 185-301 265-385 (415)
131 1nir_A Nitrite reductase; hemo 95.3 3 0.0001 43.9 23.3 67 9-87 172-245 (543)
132 1nir_A Nitrite reductase; hemo 95.2 2 7E-05 45.2 21.7 50 8-63 214-267 (543)
133 3dm0_A Maltose-binding peripla 94.9 1.6 5.3E-05 47.0 20.1 114 183-302 427-549 (694)
134 4gga_A P55CDC, cell division c 94.7 3.8 0.00013 40.7 27.3 193 17-303 149-353 (420)
135 3q7m_A Lipoprotein YFGL, BAMB; 94.6 2.2 7.5E-05 41.7 18.9 97 196-302 239-336 (376)
136 3nok_A Glutaminyl cyclase; bet 94.4 3 0.0001 40.2 18.5 163 9-265 46-214 (268)
137 3u4y_A Uncharacterized protein 94.3 3.6 0.00012 38.8 26.3 189 22-302 4-206 (331)
138 3hfq_A Uncharacterized protein 94.2 4.1 0.00014 38.9 29.6 131 189-330 143-291 (347)
139 1pby_B Quinohemoprotein amine 94.1 3 0.0001 39.1 18.0 72 9-85 69-152 (337)
140 4ggc_A P55CDC, cell division c 94.0 3.8 0.00013 38.1 28.9 40 17-63 69-108 (318)
141 4asc_A Kelch repeat and BTB do 93.5 5.2 0.00018 38.1 18.8 80 207-289 166-249 (315)
142 3no2_A Uncharacterized protein 93.3 5.6 0.00019 37.7 22.3 66 9-86 28-95 (276)
143 1jof_A Carboxy-CIS,CIS-muconat 93.1 6.7 0.00023 38.1 22.8 92 188-283 255-365 (365)
144 2j04_B YDR362CP, TAU91; beta p 93.1 3.3 0.00011 43.5 17.8 114 185-302 265-385 (524)
145 2j04_B YDR362CP, TAU91; beta p 92.9 2.5 8.4E-05 44.5 16.5 112 184-301 306-426 (524)
146 2xzm_R RACK1; ribosome, transl 92.9 5.2 0.00018 38.5 17.8 112 184-301 74-201 (343)
147 1q7f_A NHL, brain tumor CG1071 92.3 6.9 0.00024 36.2 25.9 108 188-300 122-235 (286)
148 2hes_X YDR267CP; beta-propelle 92.1 8.7 0.0003 36.7 29.5 118 184-303 105-230 (330)
149 1jmx_B Amine dehydrogenase; ox 92.0 8.2 0.00028 36.2 22.4 53 44-113 21-73 (349)
150 3sjl_D Methylamine dehydrogena 91.9 12 0.0004 37.9 22.0 52 8-64 121-180 (386)
151 2oit_A Nucleoporin 214KDA; NH2 91.8 1.8 6.2E-05 44.1 13.5 85 9-113 86-180 (434)
152 1jof_A Carboxy-CIS,CIS-muconat 91.8 9.9 0.00034 36.9 25.1 127 187-325 193-354 (365)
153 2ojh_A Uncharacterized protein 91.1 5.8 0.0002 35.9 15.1 64 237-302 137-203 (297)
154 2vpj_A Kelch-like protein 12; 90.9 11 0.00036 35.5 19.0 96 191-290 154-260 (301)
155 2z2n_A Virginiamycin B lyase; 90.6 10 0.00034 34.8 22.0 107 188-301 100-211 (299)
156 3q7m_A Lipoprotein YFGL, BAMB; 90.2 9 0.00031 37.2 16.4 21 44-64 63-83 (376)
157 2z2n_A Virginiamycin B lyase; 90.1 11 0.00038 34.4 22.1 105 188-301 184-293 (299)
158 3bg1_A Protein SEC13 homolog; 89.9 11 0.00038 35.7 16.5 115 184-302 55-197 (316)
159 2j04_A TAU60, YPL007P, hypothe 89.8 1.9 6.4E-05 46.3 11.5 32 17-55 131-162 (588)
160 2vpj_A Kelch-like protein 12; 89.7 13 0.00045 34.8 18.2 88 191-282 201-299 (301)
161 2ojh_A Uncharacterized protein 89.4 12 0.0004 33.8 19.7 65 12-87 38-104 (297)
162 1xip_A Nucleoporin NUP159; bet 89.0 20 0.00069 36.1 18.1 119 174-303 16-155 (388)
163 2ece_A 462AA long hypothetical 88.7 17 0.00059 37.6 17.5 95 8-113 176-288 (462)
164 3scy_A Hypothetical bacterial 87.7 20 0.00067 34.3 32.1 133 189-330 157-311 (361)
165 2woz_A Kelch repeat and BTB do 87.7 13 0.00044 35.3 15.2 40 18-58 102-143 (318)
166 2xn4_A Kelch-like protein 2; s 87.1 20 0.00067 33.6 19.7 81 207-290 174-258 (302)
167 3ii7_A Kelch-like protein 7; p 87.0 20 0.00069 33.6 19.0 82 206-290 169-254 (306)
168 2ecf_A Dipeptidyl peptidase IV 86.8 23 0.00078 37.7 18.0 47 15-62 36-82 (741)
169 2qc5_A Streptogramin B lactona 86.8 18 0.00063 32.9 22.4 55 8-71 9-67 (300)
170 1zgk_A Kelch-like ECH-associat 86.7 21 0.00073 33.6 16.7 86 191-280 210-306 (308)
171 3mbr_X Glutamine cyclotransfer 86.7 21 0.00073 33.6 18.1 117 175-300 7-130 (243)
172 2xn4_A Kelch-like protein 2; s 86.7 21 0.00071 33.4 17.6 90 191-284 199-300 (302)
173 1zgk_A Kelch-like ECH-associat 86.5 17 0.00059 34.3 15.3 81 206-289 184-268 (308)
174 4asc_A Kelch repeat and BTB do 86.0 16 0.00054 34.7 14.8 80 207-289 118-202 (315)
175 3fvz_A Peptidyl-glycine alpha- 85.8 25 0.00085 33.5 19.7 58 16-73 24-98 (329)
176 1qks_A Cytochrome CD1 nitrite 85.7 39 0.0013 35.6 19.3 50 8-63 232-285 (567)
177 3no2_A Uncharacterized protein 85.3 25 0.00085 33.0 18.1 39 43-83 14-52 (276)
178 3ii7_A Kelch-like protein 7; p 85.2 23 0.00078 33.2 15.4 95 191-289 96-206 (306)
179 2ece_A 462AA long hypothetical 85.1 11 0.00036 39.2 13.5 95 14-113 135-236 (462)
180 3sjl_D Methylamine dehydrogena 84.8 11 0.00038 38.0 13.4 56 8-64 71-129 (386)
181 3frx_A Guanine nucleotide-bind 82.8 32 0.0011 32.4 26.0 112 184-303 63-185 (319)
182 3nol_A Glutamine cyclotransfer 82.3 35 0.0012 32.5 16.3 117 175-300 29-152 (262)
183 3g4e_A Regucalcin; six bladed 81.7 34 0.0012 31.9 24.5 70 10-88 48-117 (297)
184 3nok_A Glutaminyl cyclase; bet 80.7 41 0.0014 32.2 16.5 115 176-300 42-161 (268)
185 1xip_A Nucleoporin NUP159; bet 79.5 42 0.0014 33.7 15.3 105 183-301 85-189 (388)
186 3e5z_A Putative gluconolactona 78.7 41 0.0014 31.0 24.7 54 9-71 20-74 (296)
187 2z3z_A Dipeptidyl aminopeptida 78.3 71 0.0024 33.6 22.8 82 18-113 183-292 (706)
188 1rwi_B Serine/threonine-protei 77.6 40 0.0014 30.3 15.9 107 189-303 152-264 (270)
189 2qc5_A Streptogramin B lactona 77.6 41 0.0014 30.5 22.2 73 188-267 147-223 (300)
190 2p4o_A Hypothetical protein; p 77.3 48 0.0016 31.1 24.8 55 8-72 24-78 (306)
191 3c75_H MADH, methylamine dehyd 76.7 37 0.0013 34.6 14.1 55 8-63 111-168 (426)
192 3e5z_A Putative gluconolactona 74.7 52 0.0018 30.2 18.0 41 10-57 62-103 (296)
193 2ad6_A Methanol dehydrogenase 74.5 86 0.0029 32.9 16.8 46 20-65 239-293 (571)
194 2dg1_A DRP35, lactonase; beta 74.2 57 0.0019 30.4 22.1 60 17-87 46-105 (333)
195 2p4o_A Hypothetical protein; p 72.8 63 0.0021 30.3 16.5 119 176-301 21-145 (306)
196 2oiz_A Aromatic amine dehydrog 72.6 72 0.0025 30.9 25.7 55 9-64 44-101 (361)
197 2woz_A Kelch repeat and BTB do 71.5 68 0.0023 30.1 18.1 80 207-289 176-259 (318)
198 1mda_H Methylamine dehydrogena 70.8 12 0.0004 37.4 8.5 55 8-63 58-115 (368)
199 2mad_H Methylamine dehydrogena 70.6 84 0.0029 30.8 27.5 54 9-63 60-116 (373)
200 2z3z_A Dipeptidyl aminopeptida 70.2 48 0.0016 34.9 13.7 94 206-302 235-341 (706)
201 1flg_A Protein (quinoprotein e 70.0 1.1E+02 0.0039 32.1 17.0 47 20-66 250-313 (582)
202 3g4e_A Regucalcin; six bladed 69.9 67 0.0023 29.8 13.4 112 184-302 51-179 (297)
203 2hqs_A Protein TOLB; TOLB, PAL 68.6 94 0.0032 30.6 15.9 111 185-302 177-299 (415)
204 1rwi_B Serine/threonine-protei 68.3 66 0.0023 28.7 15.3 37 13-55 21-57 (270)
205 4a2l_A BT_4663, two-component 63.7 1.4E+02 0.0049 32.1 16.2 108 187-300 88-199 (795)
206 2uvk_A YJHT; unknown function, 63.5 1E+02 0.0035 29.3 14.8 80 206-288 168-257 (357)
207 1mda_H Methylamine dehydrogena 61.6 7.3 0.00025 39.0 4.8 57 8-69 306-362 (368)
208 3hxj_A Pyrrolo-quinoline quino 61.5 1E+02 0.0034 28.4 15.9 101 188-300 178-281 (330)
209 3hrp_A Uncharacterized protein 60.5 1.4E+02 0.0046 29.6 18.7 35 17-58 132-166 (409)
210 2oit_A Nucleoporin 214KDA; NH2 60.1 1E+02 0.0035 30.7 13.3 117 183-302 89-222 (434)
211 1kb0_A Quinohemoprotein alcoho 59.7 1.9E+02 0.0063 30.9 19.7 47 19-65 246-304 (677)
212 2oiz_A Aromatic amine dehydrog 59.2 27 0.00092 34.0 8.5 55 8-72 298-354 (361)
213 2ghs_A AGR_C_1268P; regucalcin 55.0 1.4E+02 0.0048 28.1 25.6 84 10-111 84-167 (326)
214 2iwa_A Glutamine cyclotransfer 54.1 1.5E+02 0.005 28.0 18.3 119 175-301 7-133 (266)
215 4a2l_A BT_4663, two-component 52.0 88 0.003 33.8 11.8 105 189-300 133-241 (795)
216 2ecf_A Dipeptidyl peptidase IV 51.2 2.4E+02 0.0081 29.6 21.6 81 18-113 211-320 (741)
217 3dr2_A Exported gluconolactona 48.6 1.7E+02 0.0057 27.1 22.9 40 9-55 37-77 (305)
218 3c75_H MADH, methylamine dehyd 48.0 17 0.00059 37.1 5.0 47 8-60 362-409 (426)
219 3v9f_A Two-component system se 47.3 2.9E+02 0.01 29.5 17.5 108 187-301 363-476 (781)
220 1xfd_A DIP, dipeptidyl aminope 46.2 2.5E+02 0.0085 29.3 14.1 205 18-302 63-341 (723)
221 3v9f_A Two-component system se 44.6 3.2E+02 0.011 29.2 20.0 77 187-268 115-199 (781)
222 1k3i_A Galactose oxidase precu 44.4 3E+02 0.01 28.8 16.6 78 5-85 176-260 (656)
223 1pjx_A Dfpase, DIISOPROPYLFLUO 43.2 1.9E+02 0.0065 26.2 21.4 102 197-302 187-298 (314)
224 3fvz_A Peptidyl-glycine alpha- 43.0 2.1E+02 0.0073 26.7 22.9 31 17-54 92-122 (329)
225 1qks_A Cytochrome CD1 nitrite 41.1 3.3E+02 0.011 28.4 21.2 51 6-62 332-382 (567)
226 3hrp_A Uncharacterized protein 39.0 2.2E+02 0.0075 28.0 11.6 109 189-302 133-248 (409)
227 3ott_A Two-component system se 38.8 3.8E+02 0.013 28.4 14.6 74 187-267 63-136 (758)
228 1pjx_A Dfpase, DIISOPROPYLFLUO 38.7 2.2E+02 0.0076 25.7 20.6 41 17-57 19-59 (314)
229 2ghs_A AGR_C_1268P; regucalcin 34.8 2.9E+02 0.0098 25.8 14.3 110 185-302 88-209 (326)
230 3dr2_A Exported gluconolactona 34.3 2.8E+02 0.0094 25.5 15.2 67 206-282 215-285 (305)
231 1npe_A Nidogen, entactin; glyc 33.3 2.6E+02 0.009 24.9 13.4 103 198-302 2-109 (267)
232 1kv9_A Type II quinohemoprotei 33.2 2E+02 0.0067 30.7 10.7 68 20-87 234-322 (668)
233 3v65_B Low-density lipoprotein 32.9 3.3E+02 0.011 26.4 11.7 64 198-267 88-153 (386)
234 1kb0_A Quinohemoprotein alcoho 32.6 1.7E+02 0.0059 31.2 10.1 70 43-114 497-567 (677)
235 3pe7_A Oligogalacturonate lyas 30.6 3.4E+02 0.012 25.3 16.1 35 21-59 41-75 (388)
236 2dg1_A DRP35, lactonase; beta 29.8 3.3E+02 0.011 24.9 12.5 112 185-302 85-212 (333)
237 1yiq_A Quinohemoprotein alcoho 27.3 3E+02 0.01 29.3 10.9 78 20-113 239-337 (689)
238 2mad_H Methylamine dehydrogena 27.1 4.3E+02 0.015 25.5 26.9 49 9-63 110-167 (373)
239 2uvk_A YJHT; unknown function, 27.0 3.5E+02 0.012 25.4 10.4 49 253-301 169-224 (357)
240 4gq1_A NUP37; propeller, trans 23.6 4.8E+02 0.016 24.8 19.4 104 197-303 101-218 (393)
241 3v64_C Agrin; beta propeller, 23.4 4.8E+02 0.017 24.8 12.6 64 198-267 45-110 (349)
242 1w6s_A Methanol dehydrogenase 22.9 1.9E+02 0.0066 30.5 8.2 45 43-88 493-537 (599)
243 2zwa_A Leucine carboxyl methyl 22.9 6.3E+02 0.022 26.8 12.5 31 253-283 569-606 (695)
244 2fp8_A Strictosidine synthase; 22.9 4.5E+02 0.015 24.2 11.0 100 196-300 29-171 (322)
245 2l8n_A Transcriptional repress 22.8 31 0.001 25.5 1.3 44 434-477 11-55 (67)
246 1yiq_A Quinohemoprotein alcoho 22.8 1.8E+02 0.0061 31.2 8.0 45 43-88 495-539 (689)
247 1flg_A Protein (quinoprotein e 22.4 1.8E+02 0.0061 30.5 7.8 70 43-113 506-580 (582)
248 3p5b_L Low density lipoprotein 21.7 5.6E+02 0.019 24.9 12.9 56 199-260 85-142 (400)
249 1k32_A Tricorn protease; prote 20.8 8.3E+02 0.028 27.0 13.4 120 176-301 4-141 (1045)
250 1npe_A Nidogen, entactin; glyc 20.3 4.5E+02 0.015 23.3 22.2 105 189-301 124-236 (267)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=100.00 E-value=9.8e-69 Score=620.93 Aligned_cols=386 Identities=19% Similarity=0.292 Sum_probs=328.3
Q ss_pred CCCCCCeeeEEEeCCCCcCEEEEecCCCeEEEEEEeeCC-----------------------------------------
Q 011732 1 MVHNKRLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNN----------------------------------------- 39 (478)
Q Consensus 1 ~~~~~~l~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~----------------------------------------- 39 (478)
|+.+++|++|+|||++|||||+|||++++|+|++++.+.
T Consensus 722 i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 801 (1158)
T 3ei3_A 722 IDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFG 801 (1158)
T ss_dssp ECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CC
T ss_pred ecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcC
Confidence 356789999999999999999999999999999975410
Q ss_pred -CcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECC--eeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecc
Q 011732 40 -DTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH--EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQ 116 (478)
Q Consensus 40 -~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~--~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~ 116 (478)
..++++|+++||.+|+++++|+|++||.++|++.+.|.+ ++||||||++.. ++|+++++|||++|++.+
T Consensus 802 ~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~------~~e~~~~~Gri~vf~v~~-- 873 (1158)
T 3ei3_A 802 EEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVY------PEEAEPKQGRIVVFQYSD-- 873 (1158)
T ss_dssp CEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECC------TTCSSCCCEEEEEEEEET--
T ss_pred CceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecC------CCCCCCCceEEEEEEEEC--
Confidence 026899999999999999999999999999999999975 589999999976 578999999999999982
Q ss_pred cCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeC
Q 011732 117 NSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL 196 (478)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~ 196 (478)
.||+++|+++++|+|+||++|+
T Consensus 874 ----------------------------------------------------------~kL~lv~~~~v~g~v~al~~~~ 895 (1158)
T 3ei3_A 874 ----------------------------------------------------------GKLQTVAEKEVKGAVYSMVEFN 895 (1158)
T ss_dssp ----------------------------------------------------------TEEEEEEEEEESSCEEEEEEET
T ss_pred ----------------------------------------------------------CEEEEEEEEEcCCcCEEEeeeC
Confidence 4899999999999999999999
Q ss_pred CceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCcee
Q 011732 197 DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLV 276 (478)
Q Consensus 197 g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~v 276 (478)
|+ |++|+|++|++|+|+++ +.|+..+..-....+++|++.+|+|+|||+|+|++|++|++++++|+++|||+.++|+
T Consensus 896 g~-Lla~ig~~l~vy~l~~~--~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~v 972 (1158)
T 3ei3_A 896 GK-LLASINSTVRLYEWTTE--KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 972 (1158)
T ss_dssp TE-EEEEETTEEEEEEECTT--SCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCE
T ss_pred CE-EEEEcCCEEEEEECCCC--ceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccE
Confidence 98 99999999999999974 4576323212223477999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEEeeeeeccCCCCCccccccccCCCCC
Q 011732 277 ADCVLMDVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQ 356 (478)
Q Consensus 277 ta~~~ld~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~ 356 (478)
+++++||+++++++|++|||+++++++...++.++ ++|+.+++||+|+.||+|+++++.+..+.+.. ....
T Consensus 973 ta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~-~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~--------~~~~ 1043 (1158)
T 3ei3_A 973 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEER-QHLQEVGLFHLGEFVNVFCHGSLVMQNLGETS--------TPTQ 1043 (1158)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGG-GBEEEEEEEECSSCEEEEEECCSCCC---------------CEE
T ss_pred EEEEEEccCcEEEEcCCCcEEEEecCCCCCCcccc-ceeeeEEEEeCCCcEeeEEeeeeecCCCcccc--------cccc
Confidence 99999999999999999999999999854433333 59999999999999999999998753221111 1246
Q ss_pred cEEEEEeCCCceEEEEecCHHHHHHHHHHHHHHhcCCCCCCcCCCCccccccccCC---CCCCceeeHHHHHHHhcCCHH
Q 011732 357 TTIIASTLLGSIVIFIPISSEEYELLEAVQARLAIHPLTAPLLGNDHSEFRSRENP---VGVPKILDGDMLSQFLELTST 433 (478)
Q Consensus 357 ~~il~~T~~GsIg~i~pi~e~~~~~L~~LQ~~L~~~~~~~~~~gl~~~~~R~~~~p---~~~~~~IDGDlle~Fl~L~~~ 433 (478)
+.++|+|++|+||+|+|+++++|++|..||++|++ .++++||++|++||+|++. .+++|||||||||+|++|+.+
T Consensus 1044 ~~il~~T~~GsIg~l~pl~~~~~~~L~~Lq~~l~~--~~~~~~gl~~~~~Rs~~~~~~~~~~~~~iDGdLle~fl~L~~~ 1121 (1158)
T 3ei3_A 1044 GSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNK--VIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRP 1121 (1158)
T ss_dssp EEEEEEETTSCEEEEEEECHHHHHHHHHHHHHHHH--HSCCTTSCCHHHHHSEECSSCEECCBSEEEHHHHHGGGGSCHH
T ss_pred ceEEEEecCCEEEEEEEcCHHHHHHHHHHHHHHHh--hCCCCcCCCHHHhhCeecccccCCCCccCcHHHHHHHHcCCHH
Confidence 88999999999999999999999999999999999 6799999999999999872 128999999999999999999
Q ss_pred HHHHHHHhcCCCcceeccCCCCCCCCCCCHHHHHHHHHHH
Q 011732 434 QQEAVLSFTLGSFDTIKASSKLPPSSPIPVNQVVQLLERV 473 (478)
Q Consensus 434 ~q~~Ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 473 (478)
+|++||++++. +.+.+++++.||+||.+.||.+
T Consensus 1122 ~q~~ia~~l~~-------~~~~~~~~~~t~~ei~k~~e~l 1154 (1158)
T 3ei3_A 1122 KMQEVVANLQY-------DDGSGMKREATADDLIKVVEEL 1154 (1158)
T ss_dssp HHHHHCCCC-------------------CCHHHHHHHHHH
T ss_pred HHHHHHHhhCc-------cccccccCCCCHHHHHHHHHHH
Confidence 99999999752 1245678899999999999744
No 2
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=98.18 E-value=0.00092 Score=64.85 Aligned_cols=195 Identities=8% Similarity=0.058 Sum_probs=123.0
Q ss_pred CCcCEEEEecCC---CeEEEEEEeeCCCcceeEEEEEeCCC-CcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCC
Q 011732 16 GTPKKVLYHSES---RLLIVMRTELNNDTCSSDICCVDPLS-GSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG 91 (478)
Q Consensus 16 ~tp~ki~y~~~~---~~~~v~~~~~~~~~~~s~l~l~d~~t-~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g 91 (478)
.....++|+|+. +.+++++. -..|+++|..+ .+.+..........+.+++.- .+..+|+.|+.
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~---- 106 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSW-------ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS--DDGSKVFTASC---- 106 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEET-------TSEEEEEEECTTSCEEEEEEEECSSCEEEEEEC--TTSSEEEEEET----
T ss_pred CceEEEEEcCCCCCceEEEEECC-------CCcEEEEEcCCCCceeEEEeccccCCEEEEEEC--cCCCEEEEEcC----
Confidence 367899999986 55554432 25799999887 444422222223445554332 24578887743
Q ss_pred CCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccc
Q 011732 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (478)
.|.|.+|++..
T Consensus 107 ------------dg~v~iwd~~~--------------------------------------------------------- 117 (368)
T 3mmy_A 107 ------------DKTAKMWDLSS--------------------------------------------------------- 117 (368)
T ss_dssp ------------TSEEEEEETTT---------------------------------------------------------
T ss_pred ------------CCcEEEEEcCC---------------------------------------------------------
Confidence 57899998862
Q ss_pred cccceEEEEEEEecCCceEEEee---eCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEee
Q 011732 172 TETWQLRLAYSTTWPGMVLAICP---YLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGD 247 (478)
Q Consensus 172 ~~~~~l~l~~~~~~~G~V~ai~~---~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD 247 (478)
.+ .+......++|.+++- -++.+|+.+. ...|++|++... +.+.. +..+..+.++....+.++++.
T Consensus 118 ---~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 3mmy_A 118 ---NQ--AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS--NPMMV---LQLPERCYCADVIYPMAVVAT 187 (368)
T ss_dssp ---TE--EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS--SCSEE---EECSSCEEEEEEETTEEEEEE
T ss_pred ---CC--ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC--cEEEE---EecCCCceEEEecCCeeEEEe
Confidence 01 1223457899999985 3455455544 567999999862 22332 334456788888899999999
Q ss_pred cCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCC----eEEEeCCCCcEEEEecCC
Q 011732 248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVD----TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~----~~l~aD~~gNl~vl~~~~ 303 (478)
.-..+.++.++.....+..+. .........+.+. +.. .++++..+|.+.++....
T Consensus 188 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 188 AERGLIVYQLENQPSEFRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp GGGCEEEEECSSSCEEEEECC-CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred CCCcEEEEEeccccchhhhcc-ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 999999987765444444333 2333344444433 222 389999999999999764
No 3
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=0.0036 Score=60.94 Aligned_cols=201 Identities=8% Similarity=0.062 Sum_probs=124.9
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCC--CCcEEEEEECCCC-CceEEEEEEEECCeeEEEEeeecCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL--SGSVLSSFKLELG-ETGKSMELVRVGHEQVLVVGTSLSSGP 92 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~--t~~~i~~~~l~~~-E~~~s~~~~~l~~~~~l~VGT~~~~g~ 92 (478)
...+.++++|+.+.+++++. -..|+++|.. +++.+.. +... ..+.|++...-.+..+|+.|..
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~----- 77 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSS-------DKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSY----- 77 (379)
T ss_dssp CCEEEEEECSSSSEEEEEET-------TSCEEEEEEETTEEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEET-----
T ss_pred ccEEEEEEcCCCCEEEEEEC-------CCcEEEEecCCCcceeeeE--ecCCCCcEEEEEeCCCCCCCEEEEecc-----
Confidence 35778999999998877753 2468888876 4444433 3332 3444443211112577877744
Q ss_pred CCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccc
Q 011732 93 AIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEET 172 (478)
Q Consensus 93 ~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 172 (478)
.|.|.+|++..
T Consensus 78 -----------dg~v~iwd~~~---------------------------------------------------------- 88 (379)
T 3jrp_A 78 -----------DGKVLIWKEEN---------------------------------------------------------- 88 (379)
T ss_dssp -----------TSCEEEEEEET----------------------------------------------------------
T ss_pred -----------CCEEEEEEcCC----------------------------------------------------------
Confidence 47899999982
Q ss_pred ccceEEEEE-EEecCCceEEEeeeC---CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--------
Q 011732 173 ETWQLRLAY-STTWPGMVLAICPYL---DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-------- 239 (478)
Q Consensus 173 ~~~~l~l~~-~~~~~G~V~ai~~~~---g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-------- 239 (478)
.+...+. .....++|++++-.. +.+|+++. ...|.+|++..... ............+.++...
T Consensus 89 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 89 --GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp --TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--CCEEEEECCTTCEEEEEECCCC-----
T ss_pred --CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--eeeEEecCCCCceEEEEEcCccccccc
Confidence 1222222 233678899988665 45455544 56799999986322 2222222333356666543
Q ss_pred -------CCEEEEeecCCcEEEEEEeccCceEEEEe-cCCCCceeEEEEeecC----CeEEEeCCCCcEEEEecCC
Q 011732 240 -------FTRIAVGDCRDGILFYSYHEDARKLEQIY-CDPSQRLVADCVLMDV----DTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 240 -------~n~IlvgD~~~Sv~ll~y~~~~~~L~~va-rD~~~~~vta~~~ld~----~~~l~aD~~gNl~vl~~~~ 303 (478)
++++++|..-..|.++..+........+. -..+...++++.+-.+ ..++.+..+|.+.+++...
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 68899999989999988765544333332 2234556788887543 4788889999999999764
No 4
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.07 E-value=0.0032 Score=60.26 Aligned_cols=231 Identities=10% Similarity=0.013 Sum_probs=140.0
Q ss_pred CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCC-CCceEEEEEEEECCeeEEEEeeecCCCCC
Q 011732 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLEL-GETGKSMELVRVGHEQVLVVGTSLSSGPA 93 (478)
Q Consensus 15 ~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~-~E~~~s~~~~~l~~~~~l~VGT~~~~g~~ 93 (478)
....+.++++|+.+.+++++. ...|+++|..+.+......+.. ...+.+++.- .+..++++|+.
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~------ 161 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGE-------ASTLSIWDLAAPTPRIKAELTSSAPACYALAIS--PDSKVCFSCCS------ 161 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEES-------SSEEEEEECCCC--EEEEEEECSSSCEEEEEEC--TTSSEEEEEET------
T ss_pred CCcEEEEEEcCCCCEEEEEcC-------CCcEEEEECCCCCcceeeecccCCCceEEEEEC--CCCCEEEEEeC------
Confidence 346788999999888777643 3579999998877433333333 2334444332 24567887754
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
.|.|.+|++..
T Consensus 162 ----------dg~v~~~d~~~----------------------------------------------------------- 172 (337)
T 1gxr_A 162 ----------DGNIAVWDLHN----------------------------------------------------------- 172 (337)
T ss_dssp ----------TSCEEEEETTT-----------------------------------------------------------
T ss_pred ----------CCcEEEEeCCC-----------------------------------------------------------
Confidence 47789998862
Q ss_pred cceEEEEEE-EecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeec
Q 011732 174 TWQLRLAYS-TTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDC 248 (478)
Q Consensus 174 ~~~l~l~~~-~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~ 248 (478)
.+ .+.. ....++|.+++-.. +.+|+++. ...|++|++... +.+.. +..+..+.++.. .++++++|..
T Consensus 173 -~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~ 244 (337)
T 1gxr_A 173 -QT--LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG--RQLQQ---HDFTSQIFSLGYCPTGEWLAVGME 244 (337)
T ss_dssp -TE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEE---EECSSCEEEEEECTTSSEEEEEET
T ss_pred -Cc--eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC--ceEee---ecCCCceEEEEECCCCCEEEEEcC
Confidence 01 1111 23567888887654 45455554 567999999762 22222 233344555554 4789999998
Q ss_pred CCcEEEEEEeccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccc
Q 011732 249 RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIA 327 (478)
Q Consensus 249 ~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~v 327 (478)
-..+.++.. .......+ ......++++.+-. ...++.+..+|.+.+++.... + .+ ..+..+..+
T Consensus 245 ~~~i~~~~~--~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~-------~-~~---~~~~~~~~v 309 (337)
T 1gxr_A 245 SSNVEVLHV--NKPDKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-------A-SI---FQSKESSSV 309 (337)
T ss_dssp TSCEEEEET--TSSCEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------C-EE---EEEECSSCE
T ss_pred CCcEEEEEC--CCCCeEEE--cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC-------e-EE---EEecCCCcE
Confidence 888888654 33444333 33455677887753 447888888999999987531 1 12 222234445
Q ss_pred cEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEE
Q 011732 328 VSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFI 372 (478)
Q Consensus 328 t~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~ 372 (478)
+++.. . .....++.++.+|.|.+.-
T Consensus 310 ~~~~~---s-----------------~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 310 LSCDI---S-----------------VDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEE---C-----------------TTSCEEEEEETTSCEEEEE
T ss_pred EEEEE---C-----------------CCCCEEEEecCCCeEEEEE
Confidence 55431 1 1345688889999987653
No 5
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.04 E-value=0.0069 Score=61.51 Aligned_cols=113 Identities=7% Similarity=0.092 Sum_probs=76.4
Q ss_pred ecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCc
Q 011732 184 TWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR 262 (478)
Q Consensus 184 ~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~ 262 (478)
...++|+++.. .+.+|+++. ...|.+|++... +.+.. +......+.++...++++++|..-..|.++..+. ..
T Consensus 277 ~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~--~~~~~--~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~-~~ 350 (445)
T 2ovr_B 277 GHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETG--NCIHT--LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT-GQ 350 (445)
T ss_dssp CCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTC--CEEEE--ECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT-CC
T ss_pred CCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCC--CEEEE--EcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC-Cc
Confidence 35688998886 676566665 566999999762 22222 2223446778888899999999888888865432 22
Q ss_pred eEEEEec-CCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 263 KLEQIYC-DPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 263 ~L~~var-D~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
.+..+.. ......++++.+ +.+.++++..+|.+.+++...
T Consensus 351 ~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 351 CLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EEEEECSTTSCSSCEEEEEE-CSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEccCCCCCCCEEEEEE-CCCEEEEEeCCCeEEEEECCC
Confidence 2333322 235566777776 667889999999999998753
No 6
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=98.02 E-value=0.00087 Score=64.81 Aligned_cols=200 Identities=13% Similarity=0.122 Sum_probs=125.9
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCc----EEEEEECCCCCceEEEEEEEECCee-EEEEeeecCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS----VLSSFKLELGETGKSMELVRVGHEQ-VLVVGTSLSS 90 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~----~i~~~~l~~~E~~~s~~~~~l~~~~-~l~VGT~~~~ 90 (478)
.....++++|+.+.+++++. ...|+++|..+.+ ....+ .....+.|++.. .+.. +|++|+.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~-------d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~--~~~~~~l~~~~~--- 77 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSW-------DGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFI--DNTDLQIYVGTV--- 77 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEET-------TSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEE--ESSSEEEEEEET---
T ss_pred CcEEEEEEcCCCCEEEEEcC-------CCeEEEEEeCCCCccccceeee--ecCCceEEEEEC--CCCCcEEEEEcC---
Confidence 46788999999888877653 2579999987766 33322 344566666543 2346 7888854
Q ss_pred CCCCCCCCCCcCcceEEEEEEE-EecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccc
Q 011732 91 GPAIMPSGEAESTKGRLIVLCI-EHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKL 169 (478)
Q Consensus 91 g~~~~~~~e~~~~~Gri~v~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 169 (478)
.|.|++|++ ..
T Consensus 78 -------------dg~i~~wd~~~~------------------------------------------------------- 89 (342)
T 1yfq_A 78 -------------QGEILKVDLIGS------------------------------------------------------- 89 (342)
T ss_dssp -------------TSCEEEECSSSS-------------------------------------------------------
T ss_pred -------------CCeEEEEEeccC-------------------------------------------------------
Confidence 478999988 52
Q ss_pred cccccceEEEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCccc----ceeeeecccceeEEEEEEeCCEEE
Q 011732 170 EETETWQLRLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQR----VRRFAVGRTRFMIMLLTAHFTRIA 244 (478)
Q Consensus 170 ~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~----L~~~a~~~~~~~i~sL~~~~n~Il 244 (478)
.++..+......++|.+++-..+.+|+.+. ...|.+|++...+... .+.+..+..+..+.++....+.++
T Consensus 90 -----~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 164 (342)
T 1yfq_A 90 -----PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp -----SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred -----CceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEE
Confidence 011111111156788888766565455554 5669999876400000 011122234557888888888899
Q ss_pred EeecCCcEEEEEEec-cCceEEEEecCCCCceeEEEEee--cCCeEEEeCCCCcEEEEecCC
Q 011732 245 VGDCRDGILFYSYHE-DARKLEQIYCDPSQRLVADCVLM--DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 245 vgD~~~Sv~ll~y~~-~~~~L~~varD~~~~~vta~~~l--d~~~~l~aD~~gNl~vl~~~~ 303 (478)
+|..-..+.++..+. ....+... .......+.++.+. +...++++..+|.+.++.++.
T Consensus 165 ~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 165 VGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred EEeCCCeEEEEECCccccccceee-ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 999888988876554 22222222 22345567777775 456888889999999988765
No 7
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.0034 Score=60.81 Aligned_cols=196 Identities=16% Similarity=0.145 Sum_probs=121.1
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
....++|+|+.+.++++.. ...|+++|..+++.+..+.-. ...+.+++.. .+..+|+.|..
T Consensus 34 ~v~~~~~s~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~~~~~l~s~~~--------- 94 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSK-------DSSASVWYSLNGERLGTLDGH-TGTIWSIDVD--CFTKYCVTGSA--------- 94 (369)
T ss_dssp CEEEEEECTTSCEEEEEES-------SSCEEEEETTTCCEEEEECCC-SSCEEEEEEC--TTSSEEEEEET---------
T ss_pred eEEEEEEcCCCCEEEEEeC-------CCEEEEEeCCCchhhhhhhhc-CCcEEEEEEc--CCCCEEEEEeC---------
Confidence 6788999999887777653 247999999999887766432 2345554431 24567777743
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
.|.|.+|++... +
T Consensus 95 -------dg~i~iwd~~~~------------------------------------------------------------~ 107 (369)
T 3zwl_B 95 -------DYSIKLWDVSNG------------------------------------------------------------Q 107 (369)
T ss_dssp -------TTEEEEEETTTC------------------------------------------------------------C
T ss_pred -------CCeEEEEECCCC------------------------------------------------------------c
Confidence 578999988620 1
Q ss_pred EEEEEEEecCCceEEEeeeC-CceEEEEeC------CeEEEEeeCCCCcc-cc--------eeeeecccceeEEEEEE--
Q 011732 177 LRLAYSTTWPGMVLAICPYL-DRYFLASAG------NAFYVCGFPNDNPQ-RV--------RRFAVGRTRFMIMLLTA-- 238 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~-g~~Ll~avg------~~l~v~~l~~~~~~-~L--------~~~a~~~~~~~i~sL~~-- 238 (478)
.+......++|.+++-.. +.+|+++.. ..|.+|++...... .+ ...........+.++..
T Consensus 108 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 108 --CVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp --EEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred --EEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 122233778898888665 454666554 57999998763211 01 11111111113444443
Q ss_pred eCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 239 HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 239 ~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
.++++++|+.-..|.++..+.....+..+ ......++++.+- +...++++..+|.+.+++..
T Consensus 186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSI--DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp GGCEEEEEETTSEEEEEETTTTTEEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEEE--ecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 46899999888888776543212222222 2244567777765 44478888999999999874
No 8
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=98.00 E-value=0.012 Score=57.33 Aligned_cols=201 Identities=9% Similarity=0.070 Sum_probs=125.7
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCc--EEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS--VLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPA 93 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~--~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~ 93 (478)
.....++++|+.+.+++++. ...|+++|..+.+ .+..+.- ....+.+++.- .+..+|+.|..
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~-------d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~l~~~~~------ 72 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPN-------NHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWA--PDSNRIVTCGT------ 72 (372)
T ss_dssp SCCCEEEECTTSSEEEEECS-------SSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEE--TTTTEEEEEET------
T ss_pred CCeEEEEECCCCCEEEEEeC-------CCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEe--CCCCEEEEEcC------
Confidence 36789999999998877743 3579999988876 5555542 23455555443 34577877743
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
.|.|.+|++..
T Consensus 73 ----------dg~i~vwd~~~----------------------------------------------------------- 83 (372)
T 1k8k_C 73 ----------DRNAYVWTLKG----------------------------------------------------------- 83 (372)
T ss_dssp ----------TSCEEEEEEET-----------------------------------------------------------
T ss_pred ----------CCeEEEEECCC-----------------------------------------------------------
Confidence 47899999972
Q ss_pred cceEE-EEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CCEEEEeec
Q 011732 174 TWQLR-LAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVGDC 248 (478)
Q Consensus 174 ~~~l~-l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n~IlvgD~ 248 (478)
.++. ........++|++++-.. +.+|+++. +..|++|++.......+...-.......+.++... ++++++|..
T Consensus 84 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 -RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp -TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred -CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 1111 122234678898888654 55466655 46699999986321111111111223456777664 678999998
Q ss_pred CCcEEEEEEe----------------ccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 249 RDGILFYSYH----------------EDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 249 ~~Sv~ll~y~----------------~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
-..+.++..+ ....+....-. .....++++.+- +...++++..+|.+.+++...
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 8888887643 11222322221 344567777775 444788889999999998753
No 9
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.00 E-value=0.012 Score=56.13 Aligned_cols=201 Identities=12% Similarity=0.058 Sum_probs=123.7
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcE---EEEEEC-CCCCceEEEEEEEECCeeEEEE
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSV---LSSFKL-ELGETGKSMELVRVGHEQVLVV 84 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~---i~~~~l-~~~E~~~s~~~~~l~~~~~l~V 84 (478)
++..+-......++++|+.+.++.+. + ..|+++|..+.+. +..+.. .....+.+++.- .+..+|++
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~ 114 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-K-------GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL--PDGCTLIV 114 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-B-------SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC--TTSSEEEE
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-C-------CeEEEEECCCCCceeeeecccccCCCCcEEEEEEc--CCCCEEEE
Confidence 34455566889999999998877764 2 4799999877542 333333 234455554332 24578887
Q ss_pred eeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCc
Q 011732 85 GTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASC 164 (478)
Q Consensus 85 GT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (478)
|+. .|.|.+|++...
T Consensus 115 ~~~----------------d~~i~~~d~~~~------------------------------------------------- 129 (337)
T 1gxr_A 115 GGE----------------ASTLSIWDLAAP------------------------------------------------- 129 (337)
T ss_dssp EES----------------SSEEEEEECCCC-------------------------------------------------
T ss_pred EcC----------------CCcEEEEECCCC-------------------------------------------------
Confidence 743 478999998720
Q ss_pred CCccccccccceEEEE-EEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--e
Q 011732 165 DGIKLEETETWQLRLA-YSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--H 239 (478)
Q Consensus 165 ~g~~~~~~~~~~l~l~-~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~ 239 (478)
+.+.. .-....++|++++-.. +.+|+++. ...|++|++... +.+.... .....+.++.. .
T Consensus 130 -----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~--~~~~~i~~~~~~~~ 194 (337)
T 1gxr_A 130 -----------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--TLVRQFQ--GHTDGASCIDISND 194 (337)
T ss_dssp -------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEEC--CCSSCEEEEEECTT
T ss_pred -----------CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeee--cccCceEEEEECCC
Confidence 11112 2234567888888664 45455554 466999999762 2222221 22334666665 4
Q ss_pred CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 240 FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 240 ~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
++++++|..-..+.++. ....+....-. ....+.++.+- +...++++..+|.+.+++...
T Consensus 195 ~~~l~~~~~dg~i~~~d--~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 195 GTKLWTGGLDNTVRSWD--LREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp SSEEEEEETTSEEEEEE--TTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred CCEEEEEecCCcEEEEE--CCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 67899998777777754 44443333222 34456777764 445788888899999998753
No 10
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.92 E-value=0.014 Score=59.39 Aligned_cols=215 Identities=13% Similarity=0.100 Sum_probs=124.4
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
....++++|+. +++.++. -..|+++|..+++.+..+.- ....+.|+......+..+++.|+.
T Consensus 164 ~V~~l~~~~~~--~l~s~s~------dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~--------- 225 (464)
T 3v7d_B 164 GVWALKYAHGG--ILVSGST------DRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSR--------- 225 (464)
T ss_dssp CEEEEEECSTT--EEEEEET------TSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEEEEEEET---------
T ss_pred CEEEEEEcCCC--EEEEEeC------CCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCEEEEEcC---------
Confidence 66778887766 3333321 25799999999988776542 345677776655456688888854
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
.|.|.+|++...+.. . .. ............|+ .. ..
T Consensus 226 -------d~~i~vwd~~~~~~~----------------~--~~-------~~~~~~~~~~~~~~-----------~~-~~ 261 (464)
T 3v7d_B 226 -------DNTLHVWKLPKESSV----------------P--DH-------GEEHDYPLVFHTPE-----------EN-PY 261 (464)
T ss_dssp -------TSCEEEEECCCCCCC-------------------------------CCSSEEESCGG-----------GC-TT
T ss_pred -------CCcEEEeeCCCCccc----------------c--cc-------cccCCcceEeeccC-----------CC-eE
Confidence 478999998742100 0 00 00000000000011 00 01
Q ss_pred EEEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEE
Q 011732 177 LRLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGIL 253 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ 253 (478)
+ +.......++|.++..- +.+|+++. ...|++|++.. .+.+.... .....+.++.. .++++++|..-..|.
T Consensus 262 ~-~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~--~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 335 (464)
T 3v7d_B 262 F-VGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQ--MKCLYILS--GHTDRIYSTIYDHERKRCISASMDTTIR 335 (464)
T ss_dssp E-EEEECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTT--TEEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred E-EEEccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCC--CcEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 1 11223466889998655 55466665 66799999975 22222221 22334555554 467999999888888
Q ss_pred EEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 254 FYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 254 ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
++. ...++....- ......++++.+ +...++.+..+|.+.+++...
T Consensus 336 vwd--~~~~~~~~~~-~~h~~~v~~~~~-~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 336 IWD--LENGELMYTL-QGHTALVGLLRL-SDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEE--TTTTEEEEEE-CCCSSCEEEEEE-CSSEEEEEETTSEEEEEETTT
T ss_pred EEE--CCCCcEEEEE-eCCCCcEEEEEE-cCCEEEEEeCCCcEEEEECCC
Confidence 864 4444443322 234455666665 566888999999999998753
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.92 E-value=0.014 Score=57.16 Aligned_cols=195 Identities=9% Similarity=0.103 Sum_probs=122.5
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~~~ 95 (478)
....++|+|+.+.++.+.. -..|+++|..+++.+..+..... .+.++ .+. +..+|+.|..
T Consensus 57 ~v~~~~~s~d~~~l~s~s~-------Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~---~~s~~~~~l~s~~~-------- 117 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQ-------DGKLIIWDSYTTNKVHAIPLRSS-WVMTC---AYAPSGNYVACGGL-------- 117 (340)
T ss_dssp CEEEEEECTTSSEEEEEET-------TTEEEEEETTTCCEEEEEECSSS-CEEEE---EECTTSSEEEEEET--------
T ss_pred ceEEEEECCCCCEEEEEeC-------CCcEEEEECCCCCcceEeecCCc-cEEEE---EECCCCCEEEEEeC--------
Confidence 5678889998887776643 24799999999988877765433 34443 333 4578887743
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
.|.+.+|++... . .
T Consensus 118 --------d~~v~iw~~~~~--------------------------------------------~--------------~ 131 (340)
T 1got_B 118 --------DNICSIYNLKTR--------------------------------------------E--------------G 131 (340)
T ss_dssp --------TCEEEEEETTTC--------------------------------------------S--------------B
T ss_pred --------CCeEEEEECccC--------------------------------------------C--------------C
Confidence 467888887620 0 0
Q ss_pred eEEEEEE-EecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCc
Q 011732 176 QLRLAYS-TTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDG 251 (478)
Q Consensus 176 ~l~l~~~-~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~S 251 (478)
..++... ....++|.++.-..+..|+.+. ...|.+|++... +.+.. +....-.|.++.. .+++++.|..-..
T Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~--~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d~~ 207 (340)
T 1got_B 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG--QQTTT--FTGHTGDVMSLSLAPDTRLFVSGACDAS 207 (340)
T ss_dssp SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT--EEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC--cEEEE--EcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 1122222 2456889888876655466555 456999998752 22222 1122224556555 4678889988888
Q ss_pred EEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 252 v~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
|.++.. ..+.....- ......++++.+- +...++.+..+|.+.+++...
T Consensus 208 v~~wd~--~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 208 AKLWDV--REGMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp EEEEET--TTCSEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEC--CCCeeEEEE-cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 888643 333332221 2234567777775 445788889999999998753
No 12
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.92 E-value=0.013 Score=58.78 Aligned_cols=241 Identities=9% Similarity=0.021 Sum_probs=139.6
Q ss_pred CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCC
Q 011732 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAI 94 (478)
Q Consensus 15 ~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~ 94 (478)
......++++|+.+.+++++. .+.|+++|..+++.+..+. .....+.|+.. +..+++.|..
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~----~~~~l~~~~~------- 194 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLG-------NGLVDIYDVESQTKLRTMA-GHQARVGCLSW----NRHVLSSGSR------- 194 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEET-------TSCEEEEETTTCCEEEEEC-CCSSCEEEEEE----ETTEEEEEET-------
T ss_pred CCCEEEEEECCCCCEEEEECC-------CCeEEEEECcCCeEEEEec-CCCCceEEEEE----CCCEEEEEcC-------
Confidence 446788999998888777653 2579999999998877765 23345555543 3467777744
Q ss_pred CCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccccc
Q 011732 95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET 174 (478)
Q Consensus 95 ~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 174 (478)
.|.|.+|++... .
T Consensus 195 ---------dg~i~i~d~~~~--------------------------------------------~-------------- 207 (401)
T 4aez_A 195 ---------SGAIHHHDVRIA--------------------------------------------N-------------- 207 (401)
T ss_dssp ---------TSEEEEEETTSS--------------------------------------------S--------------
T ss_pred ---------CCCEEEEecccC--------------------------------------------c--------------
Confidence 578999998620 0
Q ss_pred ceEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--C-CEEEEee--
Q 011732 175 WQLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--F-TRIAVGD-- 247 (478)
Q Consensus 175 ~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~-n~IlvgD-- 247 (478)
..+. .-....++|.+++-.. +.+|+++. ...|.+|++... +.+.. +......+.++... + ++++.|.
T Consensus 208 ~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~--~~~~~~~v~~~~~~p~~~~ll~~~~gs 281 (401)
T 4aez_A 208 HQIG--TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS--IPKFT--KTNHNAAVKAVAWCPWQSNLLATGGGT 281 (401)
T ss_dssp CEEE--EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS--SEEEE--ECCCSSCCCEEEECTTSTTEEEEECCT
T ss_pred ceee--EEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC--CccEE--ecCCcceEEEEEECCCCCCEEEEecCC
Confidence 1111 1234678999888664 55455554 467999999862 21222 22233345566554 3 5555554
Q ss_pred cCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecC-CeEEE--eCCCCcEEEEecCCCcccCCCCCccceeeeeee-c
Q 011732 248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVV--SDRKGSIAVLSCSDRLEDNASPECNLTPNCAYH-M 323 (478)
Q Consensus 248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~-~~~l~--aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fh-l 323 (478)
.-..+.++ +...++....-. ....++++.+-.+ ..+++ +..+|.+.++..... .+.....+. .
T Consensus 282 ~d~~i~i~--d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~---------~~~~~~~~~~h 348 (401)
T 4aez_A 282 MDKQIHFW--NAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS---------GLTKQVDIPAH 348 (401)
T ss_dssp TTCEEEEE--ETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT---------EEEEEEEEECC
T ss_pred CCCEEEEE--ECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc---------cceeEEEecCC
Confidence 45555554 444443332222 3345777777544 45555 457999999997541 222222221 1
Q ss_pred CccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEEecCHHHHH
Q 011732 324 GEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPISSEEYE 380 (478)
Q Consensus 324 Gd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~pi~e~~~~ 380 (478)
...|+++.. . .....++.++.+|.|.+.-.-+.+...
T Consensus 349 ~~~v~~~~~---s-----------------~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 349 DTRVLYSAL---S-----------------PDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp SSCCCEEEE---C-----------------TTSSEEEEECTTSEEEEEECCC-----
T ss_pred CCCEEEEEE---C-----------------CCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 233454421 1 234568888899998887666544433
No 13
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.90 E-value=0.0016 Score=62.97 Aligned_cols=207 Identities=9% Similarity=-0.008 Sum_probs=125.6
Q ss_pred eCCCCcCEEEEecCCC-eEEEEEEeeCCCcceeEEEEEeC-CCCcEEEEEECC---CCCceEEEEEEEECCeeEEEEeee
Q 011732 13 HLGGTPKKVLYHSESR-LLIVMRTELNNDTCSSDICCVDP-LSGSVLSSFKLE---LGETGKSMELVRVGHEQVLVVGTS 87 (478)
Q Consensus 13 ~L~~tp~ki~y~~~~~-~~~v~~~~~~~~~~~s~l~l~d~-~t~~~i~~~~l~---~~E~~~s~~~~~l~~~~~l~VGT~ 87 (478)
.....+..++++|+.+ .+++++. ...|+++|. .+.+. ..+. ....+.+++... ..+|+.|+.
T Consensus 54 ~~~~~v~~~~~~~~~~~~l~~~~~-------dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~---~~~l~s~~~ 120 (342)
T 1yfq_A 54 RYKHPLLCCNFIDNTDLQIYVGTV-------QGEILKVDLIGSPSF---QALTNNEANLGICRICKYG---DDKLIAASW 120 (342)
T ss_dssp ECSSCEEEEEEEESSSEEEEEEET-------TSCEEEECSSSSSSE---EECBSCCCCSCEEEEEEET---TTEEEEEET
T ss_pred ecCCceEEEEECCCCCcEEEEEcC-------CCeEEEEEeccCCce---EeccccCCCCceEEEEeCC---CCEEEEEcC
Confidence 4455788899999988 6666542 257999998 87765 2333 345566665543 556776643
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCc
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI 167 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (478)
.|.|.+|++.... .+ . ..
T Consensus 121 ----------------d~~i~iwd~~~~~----~~---------------------~-~~-------------------- 138 (342)
T 1yfq_A 121 ----------------DGLIEVIDPRNYG----DG---------------------V-IA-------------------- 138 (342)
T ss_dssp ----------------TSEEEEECHHHHT----TB---------------------C-EE--------------------
T ss_pred ----------------CCeEEEEcccccc----cc---------------------c-cc--------------------
Confidence 5789999886310 00 0 00
Q ss_pred cccccccceEEEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE---eCCEE
Q 011732 168 KLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA---HFTRI 243 (478)
Q Consensus 168 ~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~---~~n~I 243 (478)
...+.+......+.|++++-..+. |+++. ...|.+|++.......+.. ........+.++.. .++++
T Consensus 139 -------~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 139 -------VKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp -------EEESCSSSSSSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSGGGCEE
T ss_pred -------ccCCeeeEEeeCCceEEEEecCCc-EEEEeCCCeEEEEECCcccccccee-eecCCCCceeEEEECCCCCCEE
Confidence 000011112356889998877777 65554 5689999997611111221 12233345666655 46899
Q ss_pred EEeecCCcEEEEEEecc------CceEEEEecCC------CCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 244 AVGDCRDGILFYSYHED------ARKLEQIYCDP------SQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 244 lvgD~~~Sv~ll~y~~~------~~~L~~varD~------~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
++|..-..+.++.|+.. ......-+... ....++++.+- +...++++..+|.|.+++...
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 99999889999888765 22222222211 13367777765 445788889999999998753
No 14
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.89 E-value=0.0026 Score=61.59 Aligned_cols=203 Identities=12% Similarity=0.037 Sum_probs=126.0
Q ss_pred CCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECC----eeEEEEeeecC
Q 011732 14 LGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGH----EQVLVVGTSLS 89 (478)
Q Consensus 14 L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~----~~~l~VGT~~~ 89 (478)
-...+..++|+|+.+.++++++... .-..|+++|..+.+......+.....+.|++ +.. ..+|++|+.
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~---~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~l~~~~~-- 88 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFAR---GTGVIQLYEIQHGDLKLLREIEKAKPIKCGT---FGATSLQQRYLATGDF-- 88 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--C---CCEEEEEEEECSSSEEEEEEEEESSCEEEEE---CTTCCTTTCCEEEEET--
T ss_pred CCCceEEEEEcCCCceEEEecCccC---CCcEEEEEeCCCCcccceeeecccCcEEEEE---EcCCCCCCceEEEecC--
Confidence 4558899999999987776654310 1368999999988876665555555666553 332 377887754
Q ss_pred CCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccc
Q 011732 90 SGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKL 169 (478)
Q Consensus 90 ~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 169 (478)
.|.|.+|++... +
T Consensus 89 --------------dg~i~iwd~~~~---------------------------------------------------~-- 101 (357)
T 3i2n_A 89 --------------GGNLHIWNLEAP---------------------------------------------------E-- 101 (357)
T ss_dssp --------------TSCEEEECTTSC---------------------------------------------------S--
T ss_pred --------------CCeEEEEeCCCC---------------------------------------------------C--
Confidence 578899988620 0
Q ss_pred cccccceEEEEEEEecCCceEEEeee-------CCceEEEEe-CCeEEEEeeCCCCcccceeeeeccc--ceeEEEEE--
Q 011732 170 EETETWQLRLAYSTTWPGMVLAICPY-------LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRT--RFMIMLLT-- 237 (478)
Q Consensus 170 ~~~~~~~l~l~~~~~~~G~V~ai~~~-------~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~--~~~i~sL~-- 237 (478)
..+.. -....++|.++... .+.+|+.+. ...|.+|++..... .+........ ...+.++.
T Consensus 102 -----~~~~~--~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 102 -----MPVYS--VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-PVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp -----SCSEE--ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-CSEEECCCTTSCCCCEEEEEEE
T ss_pred -----ccEEE--EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-cceeccccCCCCCCceEEEEEE
Confidence 00111 12467888888643 355455554 45699999986321 1332221111 22455555
Q ss_pred ----EeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEee----cCCeEEEeCCCCcEEEEecCC
Q 011732 238 ----AHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM----DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 238 ----~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l----d~~~~l~aD~~gNl~vl~~~~ 303 (478)
..++++++|..-..|.++. ....+.... ......++++.+- +.+.++++..+|.+.+++...
T Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 174 NAYNQEERVVCAGYDNGDIKLFD--LRNMALRWE--TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CCCC-CCCEEEEEETTSEEEEEE--TTTTEEEEE--EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred eccCCCCCEEEEEccCCeEEEEE--CccCceeee--cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 4678899998877777754 444444332 2234567788775 456888899999999998753
No 15
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.0073 Score=60.89 Aligned_cols=206 Identities=12% Similarity=0.119 Sum_probs=125.0
Q ss_pred EEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCC---CCc--------EEEEEECC---CCCceEEEEEEEE
Q 011732 11 KFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL---SGS--------VLSSFKLE---LGETGKSMELVRV 76 (478)
Q Consensus 11 ~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~---t~~--------~i~~~~l~---~~E~~~s~~~~~l 76 (478)
...-...+..++++|+.+.+++++.+ ..|+++|.. +++ .+..+.+. ..+.+.|+....-
T Consensus 107 ~~~h~~~v~~~~~~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNFDAFAVSSKD-------GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETT-------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred eccCCCCEEEEEEeCCCCEEEEEeCC-------CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc
Confidence 33456678889999988887776532 467777653 332 34455555 4566777665544
Q ss_pred CCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccC
Q 011732 77 GHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLC 156 (478)
Q Consensus 77 ~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (478)
.+..+++.|+. .|.|.+|++...
T Consensus 180 ~~~~~l~~~~~----------------d~~i~iwd~~~~----------------------------------------- 202 (437)
T 3gre_A 180 EEKSLLVALTN----------------LSRVIIFDIRTL----------------------------------------- 202 (437)
T ss_dssp SSCEEEEEEET----------------TSEEEEEETTTC-----------------------------------------
T ss_pred CCCCEEEEEeC----------------CCeEEEEeCCCC-----------------------------------------
Confidence 45678888855 578999998620
Q ss_pred CCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEE
Q 011732 157 SSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIM 234 (478)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~ 234 (478)
..+..+......++|++++--. +.+|+.+. ...|.+|++.. .+.+.... ......|.
T Consensus 203 ------------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~-~~~~~~v~ 261 (437)
T 3gre_A 203 ------------------ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF--NVLIRSWS-FGDHAPIT 261 (437)
T ss_dssp ------------------CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT--TEEEEEEB-CTTCEEEE
T ss_pred ------------------eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC--ccEEEEEe-cCCCCceE
Confidence 1122222112568999998554 55455554 45599999986 22233221 13344677
Q ss_pred EEEEe------CCEEEEeecCCcEEEEEEeccCceEEEEec-------------------------CCCCceeEEEEeec
Q 011732 235 LLTAH------FTRIAVGDCRDGILFYSYHEDARKLEQIYC-------------------------DPSQRLVADCVLMD 283 (478)
Q Consensus 235 sL~~~------~n~IlvgD~~~Sv~ll~y~~~~~~L~~var-------------------------D~~~~~vta~~~ld 283 (478)
++... +.+++.|..-..|.++. ...++....-. +....+++++.+-+
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~ 339 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWN--FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSN 339 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEE--TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEET
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEE--cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECC
Confidence 77543 23666666666666654 33333222211 12445577777765
Q ss_pred CCeEEEeCCCCcEEEEecCC
Q 011732 284 VDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 284 ~~~~l~aD~~gNl~vl~~~~ 303 (478)
...++.+..+|.|.+++...
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTC
T ss_pred ceEEEecCCCCeEEEEECCC
Confidence 55788889999999999764
No 16
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.88 E-value=0.013 Score=61.30 Aligned_cols=236 Identities=9% Similarity=-0.006 Sum_probs=126.6
Q ss_pred CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCC----cEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCC
Q 011732 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSG----SVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSS 90 (478)
Q Consensus 15 ~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~----~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~ 90 (478)
...+..++|+|+.+.+++++ ...++++|..++ +.+..+.-.....+.|++.-...+..+|++|..
T Consensus 18 ~~~v~~~~~spdg~~l~~~~--------~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~--- 86 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC--------GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE--- 86 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE--------TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET---
T ss_pred cCceeEEEECCCCCEEEEec--------CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecC---
Confidence 44688999999999888875 137999999888 666655433332267765432115578888754
Q ss_pred CCCCCCCCCCcCcceEEEEEEEEecccCC--CCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcc
Q 011732 91 GPAIMPSGEAESTKGRLIVLCIEHMQNSD--CGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIK 168 (478)
Q Consensus 91 g~~~~~~~e~~~~~Gri~v~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 168 (478)
.|.|.+|++...++.. ......--......+. ...-+|+ |+.
T Consensus 87 -------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~------------------~~~~s~~-----~~~ 130 (615)
T 1pgu_A 87 -------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS------------------DISWDFE-----GRR 130 (615)
T ss_dssp -------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE------------------EEEECTT-----SSE
T ss_pred -------------CCEEEEEeCCCCcccccccccccchhhcccccEE------------------EEEEeCC-----CCE
Confidence 4789999996210000 0000000000000000 0011122 110
Q ss_pred ccccc-----cceEE------EEEE-EecCCceEEEeeeCCc--eEEEEe-CCeEEEEeeCCCCcccceeeeecccce--
Q 011732 169 LEETE-----TWQLR------LAYS-TTWPGMVLAICPYLDR--YFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRF-- 231 (478)
Q Consensus 169 ~~~~~-----~~~l~------l~~~-~~~~G~V~ai~~~~g~--~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~-- 231 (478)
+-... ...+. .+.. ....++|++++-..+. .|+.+. ...|.+|++.. .+.+.... ...-
T Consensus 131 l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--~~~~~~~~--~~~~~~ 206 (615)
T 1pgu_A 131 LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--FKFSASDR--THHKQG 206 (615)
T ss_dssp EEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--BEEEEEEC--SSSCTT
T ss_pred EEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--cceeeeec--ccCCCC
Confidence 00000 00010 0111 1235677777755542 244443 46689998765 22222211 1222
Q ss_pred -eEEEEEEe---CCEEEEeecCCcEEEEEEeccCceEEEEecC---CCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 232 -MIMLLTAH---FTRIAVGDCRDGILFYSYHEDARKLEQIYCD---PSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 232 -~i~sL~~~---~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD---~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
.+.++... ++++++|..-..+.++. ...++....-.. .....++++.+.+...++.+..+|.+.+++...
T Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 207 SFVRDVEFSPDSGEFVITVGSDRKISCFD--GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp CCEEEEEECSTTCCEEEEEETTCCEEEEE--TTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred ceEEEEEECCCCCCEEEEEeCCCeEEEEE--CCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCC
Confidence 46666654 66899999888887764 344444433322 556677888776555788888999999998753
No 17
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.86 E-value=0.0065 Score=66.39 Aligned_cols=196 Identities=11% Similarity=0.137 Sum_probs=125.2
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~ 95 (478)
..++.++++|+.+.++++.. .+.|+++|..+++.+..+.-.. ..+.|+..- .+..+|++|+.
T Consensus 14 ~~v~~i~~sp~~~~la~~~~-------~g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~s--~~~~~l~~~~~-------- 75 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLY-------SGRVEIWNYETQVEVRSIQVTE-TPVRAGKFI--ARKNWIIVGSD-------- 75 (814)
T ss_dssp SCEEEEEECSSSSEEEEEET-------TSEEEEEETTTTEEEEEEECCS-SCEEEEEEE--GGGTEEEEEET--------
T ss_pred CceEEEEECCCCCEEEEEeC-------CCEEEEEECCCCceEEEEecCC-CcEEEEEEe--CCCCEEEEEeC--------
Confidence 36789999999998887752 3589999999999888877432 345554332 34578888854
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
.|.|.+|++.. | .
T Consensus 76 --------dg~i~vw~~~~---------------------------------------------------~--------~ 88 (814)
T 3mkq_A 76 --------DFRIRVFNYNT---------------------------------------------------G--------E 88 (814)
T ss_dssp --------TSEEEEEETTT---------------------------------------------------C--------C
T ss_pred --------CCeEEEEECCC---------------------------------------------------C--------c
Confidence 57899998862 0 1
Q ss_pred eEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe---CCEEEEeecCC
Q 011732 176 QLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH---FTRIAVGDCRD 250 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~---~n~IlvgD~~~ 250 (478)
.+..+ ....++|++++-.. |.+|+.+. ...|.+|++... ..+.. .+......+.++... ++++++|..-.
T Consensus 89 ~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 89 KVVDF--EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--WALEQ-TFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp EEEEE--ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT--SEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred EEEEE--ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC--ceEEE-EEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 12111 34678899988664 45465554 457999999762 11221 222233456666654 56888888888
Q ss_pred cEEEEEEeccCceEEEEecCCCCceeEEEEee---cCCeEEEeCCCCcEEEEecCC
Q 011732 251 GILFYSYHEDARKLEQIYCDPSQRLVADCVLM---DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 251 Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l---d~~~~l~aD~~gNl~vl~~~~ 303 (478)
.|.++............ ......+.++.+- +...++++..+|.+.+++...
T Consensus 164 ~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp EEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred eEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 88886543333333332 2233445555553 455888889999999998643
No 18
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.85 E-value=0.0024 Score=61.90 Aligned_cols=201 Identities=9% Similarity=0.053 Sum_probs=123.8
Q ss_pred CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCC
Q 011732 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAI 94 (478)
Q Consensus 15 ~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~ 94 (478)
......++++|+.+.++.++. -..|+++|..+.+.+.... ....+.++....-.+..+|+.|..
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~------- 149 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASC-------DKTAKMWDLSSNQAIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSW------- 149 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEET-------TSEEEEEETTTTEEEEEEE--CSSCEEEEEEEECSSCEEEEEEET-------
T ss_pred cCCEEEEEECcCCCEEEEEcC-------CCcEEEEEcCCCCceeecc--ccCceEEEEEEeCCCCCEEEEccC-------
Confidence 446788899998887776643 2589999999988776443 345566665543345577777754
Q ss_pred CCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccccc
Q 011732 95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET 174 (478)
Q Consensus 95 ~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 174 (478)
.|.|.+|++...
T Consensus 150 ---------dg~i~vwd~~~~----------------------------------------------------------- 161 (368)
T 3mmy_A 150 ---------DKTLKFWDTRSS----------------------------------------------------------- 161 (368)
T ss_dssp ---------TSEEEEECSSCS-----------------------------------------------------------
T ss_pred ---------CCcEEEEECCCC-----------------------------------------------------------
Confidence 478999988621
Q ss_pred ceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeee-ecccceeEEEEEEeCCE----EEEeecC
Q 011732 175 WQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTAHFTR----IAVGDCR 249 (478)
Q Consensus 175 ~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a-~~~~~~~i~sL~~~~n~----IlvgD~~ 249 (478)
+ .+........+.++.......++++.+..+.+|++..... .+.... .......+..+...... +++|..-
T Consensus 162 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 162 -N--PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS-EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp -S--CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE-EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred -c--EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccc-hhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 0 1122345567888888877634455577799999986321 122111 11223344444443333 8889888
Q ss_pred CcEEEEEEeccCc---eEEEEecCCC---------CceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 250 DGILFYSYHEDAR---KLEQIYCDPS---------QRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 250 ~Sv~ll~y~~~~~---~L~~varD~~---------~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
..+.++.++.... ....-+.... ...++++.+- +...++.+..+|.|.+++...
T Consensus 238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 8888877654321 1122111111 0157777765 445888899999999998753
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.0049 Score=60.88 Aligned_cols=206 Identities=7% Similarity=0.034 Sum_probs=113.9
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
....++++|+.+.+++++. ...|+++| .+++.+..+.- ....+.+++.. .+..+|++|..
T Consensus 110 ~v~~~~~s~~~~~l~~~~~-------dg~i~i~~-~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~--------- 169 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVE-------NGELRLWN-KTGALLNVLNF-HRAPIVSVKWN--KDGTHIISMDV--------- 169 (425)
T ss_dssp CEEEEEECTTSSEEEEEET-------TSCEEEEE-TTSCEEEEECC-CCSCEEEEEEC--TTSSEEEEEET---------
T ss_pred ceEEEEEcCCCCEEEEEeC-------CCeEEEEe-CCCCeeeeccC-CCccEEEEEEC--CCCCEEEEEec---------
Confidence 6788999999888887753 24699999 56666665542 23445554331 24567776643
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
.|.|.+|++...+ ....+.. +.. ....
T Consensus 170 -------d~~i~iwd~~~~~----------------~~~~~~~-------------------~~~-----------~~~~ 196 (425)
T 1r5m_A 170 -------ENVTILWNVISGT----------------VMQHFEL-------------------KET-----------GGSS 196 (425)
T ss_dssp -------TCCEEEEETTTTE----------------EEEEECC-------------------C-----------------
T ss_pred -------CCeEEEEECCCCc----------------EEEEeec-------------------ccc-----------Cccc
Confidence 4678888885210 0000000 000 0000
Q ss_pred EEEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEE
Q 011732 177 LRLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGIL 253 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ 253 (478)
+...........|.+++...+..++++. ...|++|++... +.+.... .....+.++.. .++++++|..-..+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~--~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK--TPTGKLI--GHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp ---------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS--SCSEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC--ceeeeec--cCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 0000001111126666655555344443 556999999863 2232222 22234555554 467899999888888
Q ss_pred EEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 254 FYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 254 ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
++..+.... +..+ ......++++.+..++.++.+..+|.+.+++..
T Consensus 273 i~d~~~~~~-~~~~--~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 273 IWHGGNGNS-QNCF--YGHSQSIVSASWVGDDKVISCSMDGSVRLWSLK 318 (425)
T ss_dssp EECSSSBSC-SEEE--CCCSSCEEEEEEETTTEEEEEETTSEEEEEETT
T ss_pred EEECCCCcc-ceEe--cCCCccEEEEEECCCCEEEEEeCCCcEEEEECC
Confidence 865433222 2222 224556778887655588888999999999874
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.84 E-value=0.019 Score=58.12 Aligned_cols=186 Identities=10% Similarity=0.035 Sum_probs=118.4
Q ss_pred EEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCc
Q 011732 22 LYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAE 101 (478)
Q Consensus 22 ~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~ 101 (478)
+.+++.+.+++++. .+.|+++|..+++.+..+.-. ...+.|+.. +..+|++|+.
T Consensus 138 ~~~~d~~~l~~g~~-------dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~----~~~~l~sg~~-------------- 191 (435)
T 1p22_A 138 CLQYDDQKIVSGLR-------DNTIKIWDKNTLECKRILTGH-TGSVLCLQY----DERVIITGSS-------------- 191 (435)
T ss_dssp EEECCSSEEEEEES-------SSCEEEEESSSCCEEEEECCC-SSCEEEEEC----CSSEEEEEET--------------
T ss_pred EEEECCCEEEEEeC-------CCeEEEEeCCCCeEEEEEcCC-CCcEEEEEE----CCCEEEEEcC--------------
Confidence 34445555555432 357999999999887765432 345566544 5578888854
Q ss_pred CcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEE
Q 011732 102 STKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAY 181 (478)
Q Consensus 102 ~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~ 181 (478)
.|.|.+|++... ..+..+
T Consensus 192 --dg~i~vwd~~~~-----------------------------------------------------------~~~~~~- 209 (435)
T 1p22_A 192 --DSTVRVWDVNTG-----------------------------------------------------------EMLNTL- 209 (435)
T ss_dssp --TSCEEEEESSSC-----------------------------------------------------------CEEEEE-
T ss_pred --CCeEEEEECCCC-----------------------------------------------------------cEEEEE-
Confidence 578999998620 011111
Q ss_pred EEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceee-eecccceeEEEEEEeCCEEEEeecCCcEEEEEEec
Q 011732 182 STTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRF-AVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHE 259 (478)
Q Consensus 182 ~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~-a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~ 259 (478)
....++|.+++.- +.+|+++. ...|.+|++..... +... ........+.++...++++++|..-..+.++. .
T Consensus 210 -~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd--~ 283 (435)
T 1p22_A 210 -IHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTD--ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN--T 283 (435)
T ss_dssp -CCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSC--CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--T
T ss_pred -cCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCC--ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEE--C
Confidence 2356889998765 44355554 56799999986321 2211 12233446778888999999999888887754 4
Q ss_pred cCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 260 DARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
...+....-. .....++++.+ +.+.++++..+|.|.+++...
T Consensus 284 ~~~~~~~~~~-~~~~~v~~~~~-~~~~l~~g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 284 STCEFVRTLN-GHKRGIACLQY-RDRLVVSGSSDNTIRLWDIEC 325 (435)
T ss_dssp TTCCEEEEEE-CCSSCEEEEEE-ETTEEEEEETTSCEEEEETTT
T ss_pred CcCcEEEEEc-CCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCC
Confidence 4433332222 23455666665 677899999999999998753
No 21
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.022 Score=53.77 Aligned_cols=191 Identities=8% Similarity=0.024 Sum_probs=123.4
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
..+.+++ |+.+.++.++. -..|+++|..+.+....+... ...+.+++.- .+..+|++|+.
T Consensus 20 ~v~~~~~-~~~~~l~s~~~-------dg~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~--------- 79 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSR-------DGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYD--SEKELLLFGGK--------- 79 (313)
T ss_dssp CEEEEEE-EETTEEEEEET-------TSEEEEEEESSSEEEEEEEEC-SSCEEEEEEE--TTTTEEEEEET---------
T ss_pred CcEEEEe-cCCCEEEEEEc-------CCcEEEEECCCCEEEEEeecC-CccEEEEEEC--CCCCEEEEecC---------
Confidence 6778888 77777666542 357999999888776665543 4456665432 35578888854
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
.|.+.+|++.... . + ..
T Consensus 80 -------dg~i~~~~~~~~~-------------------------------------------~-----~--------~~ 96 (313)
T 3odt_A 80 -------DTMINGVPLFATS-------------------------------------------G-----E--------DP 96 (313)
T ss_dssp -------TSCEEEEETTCCT-------------------------------------------T-----S--------CC
T ss_pred -------CCeEEEEEeeecC-------------------------------------------C-----C--------Cc
Confidence 5778888886310 0 0 01
Q ss_pred EEEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE---eCCEEEEeecCCcE
Q 011732 177 LRLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA---HFTRIAVGDCRDGI 252 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~---~~n~IlvgD~~~Sv 252 (478)
+.. -....++|.++.. .+.+|+++. ...|.+|+.. +.+..... ....+.++.. .++++++|..-..+
T Consensus 97 ~~~--~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d~~----~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i 167 (313)
T 3odt_A 97 LYT--LIGHQGNVCSLSF-QDGVVISGSWDKTAKVWKEG----SLVYNLQA--HNASVWDAKVVSFSENKFLTASADKTI 167 (313)
T ss_dssp -CE--ECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETT----EEEEEEEC--CSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred ccc--hhhcccCEEEEEe-cCCEEEEEeCCCCEEEEcCC----cEEEeccc--CCCceeEEEEccCCCCEEEEEECCCCE
Confidence 111 1346788998887 565465554 5678999822 22322222 2233444443 57999999998888
Q ss_pred EEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 253 LFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 253 ~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
.++. ..+....-.......++++.+..++.++++..+|.+.+++...
T Consensus 168 ~i~d----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~ 214 (313)
T 3odt_A 168 KLWQ----NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHT 214 (313)
T ss_dssp EEEE----TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred EEEe----cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCc
Confidence 8865 3344444455567778888887777799999999999998753
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.0029 Score=62.58 Aligned_cols=194 Identities=14% Similarity=0.125 Sum_probs=119.4
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCc--------------eEEEEEEEECCeeE
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET--------------GKSMELVRVGHEQV 81 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~--------------~~s~~~~~l~~~~~ 81 (478)
.....++++|+.+.++++.. ...|+++|..+++.+..+....... +.++... .+..
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 219 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDV-------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV---DDDK 219 (425)
T ss_dssp SCEEEEEECTTSSEEEEEET-------TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE---ETTE
T ss_pred ccEEEEEECCCCCEEEEEec-------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc---CCCE
Confidence 36778888888887776643 3579999999999888776654431 3333322 2345
Q ss_pred EEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCC
Q 011732 82 LVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDD 161 (478)
Q Consensus 82 l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
+++|+. .|.|++|++...
T Consensus 220 ~~~~~~----------------~g~i~~~d~~~~---------------------------------------------- 237 (425)
T 1r5m_A 220 FVIPGP----------------KGAIFVYQITEK---------------------------------------------- 237 (425)
T ss_dssp EEEECG----------------GGCEEEEETTCS----------------------------------------------
T ss_pred EEEEcC----------------CCeEEEEEcCCC----------------------------------------------
Confidence 666643 578999988621
Q ss_pred CCcCCccccccccceEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe
Q 011732 162 ASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH 239 (478)
Q Consensus 162 ~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~ 239 (478)
+ .+..+ ....++|++++-.. +.+|+++. ...|++|++... +.+... ......+.++...
T Consensus 238 -----~--------~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~--~~~~~~i~~~~~~ 298 (425)
T 1r5m_A 238 -----T--------PTGKL--IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG--NSQNCF--YGHSQSIVSASWV 298 (425)
T ss_dssp -----S--------CSEEE--CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB--SCSEEE--CCCSSCEEEEEEE
T ss_pred -----c--------eeeee--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC--ccceEe--cCCCccEEEEEEC
Confidence 0 00111 24567888888664 45465555 566999998762 222222 2233456777665
Q ss_pred CC-EEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 240 FT-RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 240 ~n-~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
.+ ++++|..-..+.++. ....+....-. .....++++.+- +...++++..+|.+.+++...
T Consensus 299 ~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 299 GDDKVISCSMDGSVRLWS--LKQNTLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp TTTEEEEEETTSEEEEEE--TTTTEEEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred CCCEEEEEeCCCcEEEEE--CCCCcEeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 43 888888777777754 44444433322 234467777765 344788888899999999754
No 23
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.80 E-value=0.0011 Score=66.27 Aligned_cols=191 Identities=9% Similarity=0.064 Sum_probs=115.3
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCC
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPS 97 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~ 97 (478)
...++|+|+.+.++.+..+ ..++++|..+.+....+ .. ..+.++..+. .+..+|++|+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d-------~~v~i~d~~~~~~~~~~--~~-~~~~~~~~~~-~~~~~l~~~~~---------- 117 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLD-------GHDFLFNTIIRDGSKML--KR-ADYTAVDTAK-LQMRRFILGTT---------- 117 (420)
T ss_dssp CTTCEEEEEETTEEEEEET-------TEEEEEECCSEETTTTS--CS-CCEEEEEEEC-SSSCEEEEEET----------
T ss_pred ccceeeeecCCeEEEEEcC-------CcEEEEEecccceeeEE--ec-CCceEEEEEe-cCCCEEEEEEC----------
Confidence 4578999999988887652 47999998876543222 22 2444443332 23467888754
Q ss_pred CCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceE
Q 011732 98 GEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQL 177 (478)
Q Consensus 98 ~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 177 (478)
.|.|.+|++.. .+
T Consensus 118 ------dg~i~iwd~~~------------------------------------------------------------~~- 130 (420)
T 3vl1_A 118 ------EGDIKVLDSNF------------------------------------------------------------NL- 130 (420)
T ss_dssp ------TSCEEEECTTS------------------------------------------------------------CE-
T ss_pred ------CCCEEEEeCCC------------------------------------------------------------cc-
Confidence 46788887651 01
Q ss_pred EEEEE-EecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CCEEEEeecCCcE
Q 011732 178 RLAYS-TTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FTRIAVGDCRDGI 252 (478)
Q Consensus 178 ~l~~~-~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n~IlvgD~~~Sv 252 (478)
.+.. ....++|++++-.. +.+|+.+. ...|++|++... +.+.... .....|.++... +++++.|..-..+
T Consensus 131 -~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~v 205 (420)
T 3vl1_A 131 -QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNPRTLI--GHRATVTDIAIIDRGRNVLSASLDGTI 205 (420)
T ss_dssp -EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CCCEEEE--CCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred -eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--cCceEEc--CCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 1222 24678999998764 45455554 467999999762 2233322 223346666554 6789999888888
Q ss_pred EEEEEeccCceEEEEec--CCCCceeEEEEee----------------------cCCeEEEeCCCCcEEEEecCC
Q 011732 253 LFYSYHEDARKLEQIYC--DPSQRLVADCVLM----------------------DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 253 ~ll~y~~~~~~L~~var--D~~~~~vta~~~l----------------------d~~~~l~aD~~gNl~vl~~~~ 303 (478)
.++.. ..++....-+ ......+.++.+. +...++++..+|.+.+++...
T Consensus 206 ~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 278 (420)
T 3vl1_A 206 RLWEC--GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 278 (420)
T ss_dssp EEEET--TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT
T ss_pred EEeEC--CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 87643 3333332221 2233444454442 233788889999999998743
No 24
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.80 E-value=0.033 Score=54.83 Aligned_cols=199 Identities=9% Similarity=0.074 Sum_probs=119.8
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeee
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTS 87 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~ 87 (478)
.++.++.+..++.++++|+.+.+++.... ...|+++|..+++.+..+.... .+.+++.- .+..+|+++..
T Consensus 24 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~s--pdg~~l~~~~~ 93 (391)
T 1l0q_A 24 VTATIPVGSNPMGAVISPDGTKVYVANAH------SNDVSIIDTATNNVIATVPAGS--SPQGVAVS--PDGKQVYVTNM 93 (391)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEEGG------GTEEEEEETTTTEEEEEEECSS--SEEEEEEC--TTSSEEEEEET
T ss_pred EEEEeecCCCcceEEECCCCCEEEEECCC------CCeEEEEECCCCeEEEEEECCC--CccceEEC--CCCCEEEEEEC
Confidence 35677888889999999999977666532 3589999999999988776654 55554321 24466666533
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCc
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI 167 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (478)
..|.|++|++..
T Consensus 94 ---------------~~~~v~v~d~~~----------------------------------------------------- 105 (391)
T 1l0q_A 94 ---------------ASSTLSVIDTTS----------------------------------------------------- 105 (391)
T ss_dssp ---------------TTTEEEEEETTT-----------------------------------------------------
T ss_pred ---------------CCCEEEEEECCC-----------------------------------------------------
Confidence 147889988752
Q ss_pred cccccccceEEEEEEEecCCceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCE
Q 011732 168 KLEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTR 242 (478)
Q Consensus 168 ~~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~ 242 (478)
.+ .+......+.+.+++-.. |++|+++. ...|++|++.. .+.+... ..+..+..+.. .+++
T Consensus 106 -------~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~---~~~~~~~~~~~~~dg~~ 171 (391)
T 1l0q_A 106 -------NT--VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT--KAVINTV---SVGRSPKGIAVTPDGTK 171 (391)
T ss_dssp -------TE--EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEE---ECCSSEEEEEECTTSSE
T ss_pred -------Ce--EEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC--CcEEEEE---ecCCCcceEEECCCCCE
Confidence 01 122233456677777543 55464443 46799998875 2222222 22223444444 3667
Q ss_pred EEEeecCC-cEEEEEEeccCceEEEEecCCCCceeEEEEeec-CCeEEEeC---CCCcEEEEecC
Q 011732 243 IAVGDCRD-GILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSD---RKGSIAVLSCS 302 (478)
Q Consensus 243 IlvgD~~~-Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD---~~gNl~vl~~~ 302 (478)
++++.... .|.+ |+...++....... ...+.++.+-. ...++++. .++.+.+++..
T Consensus 172 l~~~~~~~~~v~~--~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 172 VYVANFDSMSISV--IDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp EEEEETTTTEEEE--EETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred EEEEeCCCCEEEE--EECCCCeEEEEEec--CCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 86665554 4444 56655555443332 33566666543 33566555 68899988864
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.79 E-value=0.0059 Score=60.26 Aligned_cols=115 Identities=8% Similarity=0.017 Sum_probs=70.4
Q ss_pred cCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeee-ccc---ceeEEEEEE--eCCEEEEeecC---CcEEE
Q 011732 185 WPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAV-GRT---RFMIMLLTA--HFTRIAVGDCR---DGILF 254 (478)
Q Consensus 185 ~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~-~~~---~~~i~sL~~--~~n~IlvgD~~---~Sv~l 254 (478)
..++|++++-..+.+|+++. ...|++|++... +.+..... ... ...+.++.. .++++++|..- ..|.+
T Consensus 185 ~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i 262 (397)
T 1sq9_A 185 PSQFATSVDISERGLIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 262 (397)
T ss_dssp SCCCCCEEEECTTSEEEEECTTSEEEEEETTTT--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred CCCCceEEEECCCceEEEEeCCCcEEEEECCCC--ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEE
Confidence 46788888876654455554 466999999762 22322221 001 345666665 47888888776 66666
Q ss_pred EEEeccCceEEEEecCC------------CCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 255 YSYHEDARKLEQIYCDP------------SQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 255 l~y~~~~~~L~~varD~------------~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
+. ....+....-... ....++++.+- +...++.+..+|.|.+++...
T Consensus 263 ~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 263 YE--TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EE--TTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EE--CCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 54 3333333222221 45677888875 445788889999999998753
No 26
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.78 E-value=0.033 Score=56.39 Aligned_cols=171 Identities=15% Similarity=0.149 Sum_probs=112.6
Q ss_pred eEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCc
Q 011732 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSM 123 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~ 123 (478)
+.|+++|..+++.+..+.- ..+.+.++.. . ..+++.|+. .|.|.+|++...
T Consensus 193 g~i~vwd~~~~~~~~~~~~-h~~~v~~l~~---~-~~~l~s~s~----------------dg~i~vwd~~~~-------- 243 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIH-HCEAVLHLRF---N-NGMMVTCSK----------------DRSIAVWDMASP-------- 243 (435)
T ss_dssp SCEEEEESSSCCEEEEECC-CCSCEEEEEC---C-TTEEEEEET----------------TSCEEEEECSSS--------
T ss_pred CeEEEEECCCCcEEEEEcC-CCCcEEEEEE---c-CCEEEEeeC----------------CCcEEEEeCCCC--------
Confidence 5799999999998877653 3445555543 3 357777754 578999998621
Q ss_pred cccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEE-EEEecCCceEEEeeeCCceEEE
Q 011732 124 TFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA-YSTTWPGMVLAICPYLDRYFLA 202 (478)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~-~~~~~~G~V~ai~~~~g~~Ll~ 202 (478)
. .+... ......++|.++.. .+.+|++
T Consensus 244 ------------------------------------~---------------~~~~~~~~~~~~~~v~~~~~-~~~~l~s 271 (435)
T 1p22_A 244 ------------------------------------T---------------DITLRRVLVGHRAAVNVVDF-DDKYIVS 271 (435)
T ss_dssp ------------------------------------S---------------CCEEEEEECCCSSCEEEEEE-ETTEEEE
T ss_pred ------------------------------------C---------------CceeeeEecCCCCcEEEEEe-CCCEEEE
Confidence 0 11111 12345688999887 5665666
Q ss_pred Ee-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEe
Q 011732 203 SA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVL 281 (478)
Q Consensus 203 av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ 281 (478)
+. ...|.+|++... +.+.... .....+.++...++++++|..-..|.++.. ..++....- ......++++.+
T Consensus 272 ~~~dg~i~vwd~~~~--~~~~~~~--~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~--~~~~~~~~~-~~h~~~v~~~~~ 344 (435)
T 1p22_A 272 ASGDRTIKVWNTSTC--EFVRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLWDI--ECGACLRVL-EGHEELVRCIRF 344 (435)
T ss_dssp EETTSEEEEEETTTC--CEEEEEE--CCSSCEEEEEEETTEEEEEETTSCEEEEET--TTCCEEEEE-CCCSSCEEEEEC
T ss_pred EeCCCeEEEEECCcC--cEEEEEc--CCCCcEEEEEeCCCEEEEEeCCCeEEEEEC--CCCCEEEEE-eCCcCcEEEEEe
Confidence 65 567999998762 2233222 233457777778999999999888888654 333333222 234456777776
Q ss_pred ecCCeEEEeCCCCcEEEEecCC
Q 011732 282 MDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 282 ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+...++++..+|.|.+++...
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCC
Confidence 777899999999999999753
No 27
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=97.77 E-value=0.0038 Score=62.38 Aligned_cols=199 Identities=11% Similarity=0.071 Sum_probs=118.9
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCCCCCC
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~~~~ 96 (478)
++-++|+|+.+.+++++... -..|+++|..+++.+..++.. ..+.+++ |. +..+++.|+.
T Consensus 136 ~~~v~fSpDg~~la~as~~~-----d~~i~iwd~~~~~~~~~~~~~--~~V~~v~---fspdg~~l~s~s~--------- 196 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKV-----PAIMRIIDPSDLTEKFEIETR--GEVKDLH---FSTDGKVVAYITG--------- 196 (365)
T ss_dssp EEEEEECTTSSCEEEEESCS-----SCEEEEEETTTTEEEEEEECS--SCCCEEE---ECTTSSEEEEECS---------
T ss_pred EEEEEEcCCCCEEEEEECCC-----CCEEEEeECCCCcEEEEeCCC--CceEEEE---EccCCceEEeccc---------
Confidence 56799999999999887533 258999999999988776532 3355543 43 4467777642
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
+.+.+|.... | ..
T Consensus 197 --------~~~~~~~~~~---------------------------------------------------~--------~~ 209 (365)
T 4h5i_A 197 --------SSLEVISTVT---------------------------------------------------G--------SC 209 (365)
T ss_dssp --------SCEEEEETTT---------------------------------------------------C--------CE
T ss_pred --------eeEEEEEecc---------------------------------------------------C--------cc
Confidence 2344444331 0 01
Q ss_pred EEEEEEEecCCceEEEeeeC-CceEEEEe-C--C--eEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeec
Q 011732 177 LRLAYSTTWPGMVLAICPYL-DRYFLASA-G--N--AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDC 248 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g--~--~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~ 248 (478)
+.........+.|.+++-.. |.+|+.+. . . .+..|+........++...+....-.|+++.. .+.+|++|..
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence 11111122345677776443 55455443 1 2 24445444321111111112222234666654 4789999998
Q ss_pred CCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCCC
Q 011732 249 RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDR 304 (478)
Q Consensus 249 ~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~~ 304 (478)
-.+|.++ +....+....-...+..+|+++.|- |...++.+-.++.|.+++.|..
T Consensus 290 D~~V~iw--d~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALV--KLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEE--ETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEE--ECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8898885 5556665544455677789999986 4446777789999999998754
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.76 E-value=0.027 Score=54.22 Aligned_cols=195 Identities=11% Similarity=0.133 Sum_probs=121.5
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~ 95 (478)
...+.|+|+|+.+.++.+.. -..|+++|..+++.+..+.... ..+.++.. ..+..+|+.|..
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~-------dg~v~lWd~~~~~~~~~~~~~~-~~v~~~~~--~~~~~~l~s~s~-------- 75 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLY-------SGRVELWNYETQVEVRSIQVTE-TPVRAGKF--IARKNWIIVGSD-------- 75 (304)
T ss_dssp SCEEEEEECSSSSEEEEEET-------TSEEEEEETTTTEEEEEEECCS-SCEEEEEE--EGGGTEEEEEET--------
T ss_pred CceEEEEECCCCCEEEEEcC-------CCcEEEEECCCCceeEEeeccC-CcEEEEEE--eCCCCEEEEECC--------
Confidence 36789999999988776653 2579999999998877766443 23444332 235578887754
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
-|.|.+|++.. | .
T Consensus 76 --------d~~i~vwd~~~---------------------------------------------------~--------~ 88 (304)
T 2ynn_A 76 --------DFRIRVFNYNT---------------------------------------------------G--------E 88 (304)
T ss_dssp --------TSEEEEEETTT---------------------------------------------------C--------C
T ss_pred --------CCEEEEEECCC---------------------------------------------------C--------c
Confidence 47899998762 0 1
Q ss_pred eEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe---CCEEEEeecCC
Q 011732 176 QLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH---FTRIAVGDCRD 250 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~---~n~IlvgD~~~ 250 (478)
.+.. -....++|++|+-.. +.+|+.|. ..+|.+|++... ..+.. .+......|.++... +++++.|..-.
T Consensus 89 ~~~~--~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~--~~~~~-~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 89 KVVD--FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--WALEQ-TFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp EEEE--EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT--TEEEE-EECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred EEEE--EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC--cchhh-hhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 1111 134678899988655 45455444 466999999752 11221 122223356677654 46888888888
Q ss_pred cEEEEEEeccCceEEEEecCCCCceeEEEEee---cCCeEEEeCCCCcEEEEecC
Q 011732 251 GILFYSYHEDARKLEQIYCDPSQRLVADCVLM---DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 251 Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l---d~~~~l~aD~~gNl~vl~~~ 302 (478)
.|.++..+.....+.... .....+..+.+. +...++.+..+|.|.+++..
T Consensus 164 ~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (304)
T ss_dssp EEEEEETTCSSCSEEEEC--CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred eEEEEECCCCCccceecc--CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence 888865533333333322 233345445443 33478888999999999874
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.76 E-value=0.024 Score=54.27 Aligned_cols=193 Identities=7% Similarity=0.012 Sum_probs=116.6
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~~~ 95 (478)
..+.++++|+.+.++.+.. -..|+++|..+++.+..+.-. ...+.++ .+. +..+|+.|..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~-------dg~i~iw~~~~~~~~~~~~~h-~~~v~~~---~~~~~~~~l~s~~~-------- 85 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSA-------DKLIKIWGAYDGKFEKTISGH-KLGISDV---AWSSDSNLLVSASD-------- 85 (312)
T ss_dssp CEEEEEECTTSSEEEEEET-------TSCEEEEETTTCCEEEEECCC-SSCEEEE---EECTTSSEEEEEET--------
T ss_pred cEEEEEECCCCCEEEEeeC-------CCeEEEEeCCCcccchhhccC-CCceEEE---EEcCCCCEEEEECC--------
Confidence 5788999999887776643 247999999888876654322 2234443 333 4577877743
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
.|.|.+|++... .
T Consensus 86 --------d~~i~vwd~~~~-----------------------------------------------------------~ 98 (312)
T 4ery_A 86 --------DKTLKIWDVSSG-----------------------------------------------------------K 98 (312)
T ss_dssp --------TSEEEEEETTTC-----------------------------------------------------------C
T ss_pred --------CCEEEEEECCCC-----------------------------------------------------------c
Confidence 478999988620 0
Q ss_pred eEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCc
Q 011732 176 QLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDG 251 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~S 251 (478)
.+..+ ....++|.++.-.. +.+|+.+. ..+|.+|++... +.+...... ...+.++.. .++++++|..-..
T Consensus 99 ~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 99 CLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp EEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--CEEEEECCC--SSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--EEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCCc
Confidence 11111 23567888877554 45455443 566999999752 223322222 224555554 4678999988888
Q ss_pred EEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 252 v~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
+.++. ...++....-.......+..+.+- +...++++..+|.+.+++...
T Consensus 173 i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 173 CRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223 (312)
T ss_dssp EEEEE--TTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EEEEE--CCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 87754 433333322222333345555553 344788889999999998753
No 30
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.74 E-value=0.0017 Score=62.83 Aligned_cols=193 Identities=11% Similarity=0.127 Sum_probs=117.1
Q ss_pred ecCCCeEEEEEEeeCCCcceeEEEEEeCCCCc-EEEEEECCCCC---ceEEEEEEE-E-CCeeEEEEeeecCCCCCCCCC
Q 011732 24 HSESRLLIVMRTELNNDTCSSDICCVDPLSGS-VLSSFKLELGE---TGKSMELVR-V-GHEQVLVVGTSLSSGPAIMPS 97 (478)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~-~i~~~~l~~~E---~~~s~~~~~-l-~~~~~l~VGT~~~~g~~~~~~ 97 (478)
+|+.+.++.++. ...|+++|..+.+ .+..+....++ .+.++.... + .+..++++|+.
T Consensus 126 s~~~~~l~~~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---------- 188 (357)
T 3i2n_A 126 GEGAPEIVTGSR-------DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD---------- 188 (357)
T ss_dssp C-CCCEEEEEET-------TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET----------
T ss_pred CCCccEEEEEeC-------CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc----------
Confidence 455666555432 2579999998876 66666655544 455544211 2 24578887754
Q ss_pred CCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceE
Q 011732 98 GEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQL 177 (478)
Q Consensus 98 ~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 177 (478)
.|.|.+|++.. .++
T Consensus 189 ------d~~i~i~d~~~------------------------------------------------------------~~~ 202 (357)
T 3i2n_A 189 ------NGDIKLFDLRN------------------------------------------------------------MAL 202 (357)
T ss_dssp ------TSEEEEEETTT------------------------------------------------------------TEE
T ss_pred ------CCeEEEEECcc------------------------------------------------------------Cce
Confidence 57899998862 122
Q ss_pred EEEEEEecCCceEEEeee----CCceEEEEe-CCeEEEEeeCCCCcccceeee---ecccceeEEEEEEeC--C-EEEEe
Q 011732 178 RLAYSTTWPGMVLAICPY----LDRYFLASA-GNAFYVCGFPNDNPQRVRRFA---VGRTRFMIMLLTAHF--T-RIAVG 246 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~----~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a---~~~~~~~i~sL~~~~--n-~Ilvg 246 (478)
.......++|++++-. .+.+|+++. ...|++|++... +.+.... .......|.++.... . +++.|
T Consensus 203 --~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 203 --RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ--HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp --EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE--ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred --eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC--CcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence 3335678899999866 466566654 567999998752 2222221 112334567776654 3 68888
Q ss_pred ecCCcEEEEEEeccCce---------------EEEEe-cCCCCceeEEEEeecC-CeEE-EeCCCCcEEEEecCC
Q 011732 247 DCRDGILFYSYHEDARK---------------LEQIY-CDPSQRLVADCVLMDV-DTAV-VSDRKGSIAVLSCSD 303 (478)
Q Consensus 247 D~~~Sv~ll~y~~~~~~---------------L~~va-rD~~~~~vta~~~ld~-~~~l-~aD~~gNl~vl~~~~ 303 (478)
..-..|.++.++..... +..+. -......++++.+-.+ ..++ .+..+|.+.++....
T Consensus 279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 88888988887643211 11111 1234556778877544 3565 588899999998753
No 31
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.71 E-value=0.016 Score=56.02 Aligned_cols=200 Identities=12% Similarity=0.073 Sum_probs=119.6
Q ss_pred CCcCEEEEecCCC----eEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCC
Q 011732 16 GTPKKVLYHSESR----LLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG 91 (478)
Q Consensus 16 ~tp~ki~y~~~~~----~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g 91 (478)
.....++++|+.+ .+++++. .+.|+++|..+++.+..+.- ....+.+++.- -.+..+|+.|+.
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~-------dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~~l~s~~~---- 136 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGS-------RGIIRIINPITMQCIKHYVG-HGNAINELKFH-PRDPNLLLSVSK---- 136 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEET-------TCEEEEECTTTCCEEEEEES-CCSCEEEEEEC-SSCTTEEEEEET----
T ss_pred CcEEEEEeccCCCCCCCEEEEecC-------CCEEEEEEchhceEeeeecC-CCCcEEEEEEC-CCCCCEEEEEeC----
Confidence 4577888988843 4444432 35899999999998877652 23455554332 114467877754
Q ss_pred CCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccc
Q 011732 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (478)
.|.|.+|++...
T Consensus 137 ------------dg~i~iwd~~~~-------------------------------------------------------- 148 (366)
T 3k26_A 137 ------------DHALRLWNIQTD-------------------------------------------------------- 148 (366)
T ss_dssp ------------TSCEEEEETTTT--------------------------------------------------------
T ss_pred ------------CCeEEEEEeecC--------------------------------------------------------
Confidence 578999988620
Q ss_pred cccceEEEEEE-EecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeee-----------------------
Q 011732 172 TETWQLRLAYS-TTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFA----------------------- 225 (478)
Q Consensus 172 ~~~~~l~l~~~-~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a----------------------- 225 (478)
..+..+.. ....++|++++-.. +.+|+++. ...|++|++... +.+....
T Consensus 149 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 149 ---TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK--RMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp ---EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH--HHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred ---eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC--ccccccceeEEecCCCCcccccceeeccCc
Confidence 01111110 24678899888654 45455554 567999998752 1111000
Q ss_pred ---ecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCc-------------eEEEEecCCCCceeEEEEee-c--CCe
Q 011732 226 ---VGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR-------------KLEQIYCDPSQRLVADCVLM-D--VDT 286 (478)
Q Consensus 226 ---~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~-------------~L~~varD~~~~~vta~~~l-d--~~~ 286 (478)
.......|.++...++++++|..-..+.++....... .+..+.. ....++++.+- + ...
T Consensus 224 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKM 301 (366)
T ss_dssp EEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSE
T ss_pred cccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcE
Confidence 0002335666666699999999988888877654221 1222221 22234444443 3 457
Q ss_pred EEEeCCCCcEEEEecCC
Q 011732 287 AVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 287 ~l~aD~~gNl~vl~~~~ 303 (478)
++++..+|.|.+++...
T Consensus 302 l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEV 318 (366)
T ss_dssp EEEECTTSCEEEEECCS
T ss_pred EEEEecCCcEEEEECCC
Confidence 78889999999999764
No 32
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.0053 Score=59.77 Aligned_cols=202 Identities=9% Similarity=0.020 Sum_probs=122.1
Q ss_pred CcCEEEEecC--CCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCC-CCceEEEEEEEECC--eeEEEEeeecCCC
Q 011732 17 TPKKVLYHSE--SRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLEL-GETGKSMELVRVGH--EQVLVVGTSLSSG 91 (478)
Q Consensus 17 tp~ki~y~~~--~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~-~E~~~s~~~~~l~~--~~~l~VGT~~~~g 91 (478)
....++|+|. .+.++.++. -..|+++|..+.+......+.. ...+.|++.. .+ ..++++|+.
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~~~~~---- 123 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSY-------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA--PHEYGPLLLVASS---- 123 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEET-------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC--CGGGCSEEEEEET----
T ss_pred cEEEEEeCCCCCCCEEEEecc-------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeC--CCCCCCEEEEecC----
Confidence 4567777655 555555432 2479999988876333333332 3445554332 22 467887754
Q ss_pred CCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccc
Q 011732 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (478)
.|.|.+|++... .
T Consensus 124 ------------d~~i~v~d~~~~--------------------------------------------~----------- 136 (379)
T 3jrp_A 124 ------------DGKVSVVEFKEN--------------------------------------------G----------- 136 (379)
T ss_dssp ------------TSEEEEEECCTT--------------------------------------------S-----------
T ss_pred ------------CCcEEEEecCCC--------------------------------------------C-----------
Confidence 578999998721 0
Q ss_pred cccceEEEEEEEecCCceEEEeeeC--------------CceEEEEe-CCeEEEEeeCCCCcccceeee-ecccceeEEE
Q 011732 172 TETWQLRLAYSTTWPGMVLAICPYL--------------DRYFLASA-GNAFYVCGFPNDNPQRVRRFA-VGRTRFMIML 235 (478)
Q Consensus 172 ~~~~~l~l~~~~~~~G~V~ai~~~~--------------g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a-~~~~~~~i~s 235 (478)
...........++|++++-.. +.+|+++. ...|++|++...... ..... +......|.+
T Consensus 137 ----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 137 ----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRD 211 (379)
T ss_dssp ----CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE-EEEEEEECCCSSCEEE
T ss_pred ----ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-eeeEEEEecccCcEeE
Confidence 001112245678888888664 56455554 556999999753211 12222 2122345666
Q ss_pred EEEe-----CCEEEEeecCCcEEEEEEeccCc--eEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 236 LTAH-----FTRIAVGDCRDGILFYSYHEDAR--KLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 236 L~~~-----~n~IlvgD~~~Sv~ll~y~~~~~--~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
+... ++++++|+.-..+.++..+.... .............++++.+- +...++.+..+|.+.+++...
T Consensus 212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 6654 56888999888999987765322 33444444466678888875 444677778899999999864
No 33
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.70 E-value=0.013 Score=57.44 Aligned_cols=198 Identities=10% Similarity=0.064 Sum_probs=120.5
Q ss_pred CCcCEEEEec-CCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECC------------CCCceEEEEEEEECCeeEE
Q 011732 16 GTPKKVLYHS-ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE------------LGETGKSMELVRVGHEQVL 82 (478)
Q Consensus 16 ~tp~ki~y~~-~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~------------~~E~~~s~~~~~l~~~~~l 82 (478)
.....++++| +.+.++.++. -..|+++|..+.+....+... ....+.+++.. -.+..+|
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l 115 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGS-------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY-PHDTGMF 115 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEET-------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEEC-TTCTTCE
T ss_pred CcEEEEEEecCCCCEEEEEcC-------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEc-cCCCcEE
Confidence 3678899999 7777776653 247999999887655444321 23444444321 1134567
Q ss_pred EEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCC
Q 011732 83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDA 162 (478)
Q Consensus 83 ~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+.|+. .|.|.+|++..
T Consensus 116 ~s~~~----------------d~~i~iwd~~~------------------------------------------------ 131 (408)
T 4a11_B 116 TSSSF----------------DKTLKVWDTNT------------------------------------------------ 131 (408)
T ss_dssp EEEET----------------TSEEEEEETTT------------------------------------------------
T ss_pred EEEeC----------------CCeEEEeeCCC------------------------------------------------
Confidence 66643 57899998862
Q ss_pred CcCCccccccccceEEEEEEEecCCceEEEeeeC----CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEE
Q 011732 163 SCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL----DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT 237 (478)
Q Consensus 163 ~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~----g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~ 237 (478)
. +.+......+++.++.... +.+|+++. +..|.+|++... +.+.... .....|.++.
T Consensus 132 ------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~--~~~~~v~~~~ 193 (408)
T 4a11_B 132 ------------L--QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG--SCSHILQ--GHRQEILAVS 193 (408)
T ss_dssp ------------T--EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS--CCCEEEC--CCCSCEEEEE
T ss_pred ------------C--ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc--ceeeeec--CCCCcEEEEE
Confidence 0 1223334677787777553 33455554 566999999762 2233222 2333566666
Q ss_pred Ee--CC-EEEEeecCCcEEEEEEeccCceEEEEec-------------CCCCceeEEEEeec-CCeEEEeCCCCcEEEEe
Q 011732 238 AH--FT-RIAVGDCRDGILFYSYHEDARKLEQIYC-------------DPSQRLVADCVLMD-VDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 238 ~~--~n-~IlvgD~~~Sv~ll~y~~~~~~L~~var-------------D~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~ 300 (478)
.. ++ .+++|+.-..+.++..+.....+..+.. ......++++.+-. ...++++..+|.+.+++
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 55 34 5778888888888765443323333211 23455677887754 34788889999999999
Q ss_pred cCC
Q 011732 301 CSD 303 (478)
Q Consensus 301 ~~~ 303 (478)
...
T Consensus 274 ~~~ 276 (408)
T 4a11_B 274 SSN 276 (408)
T ss_dssp TTT
T ss_pred CCC
Confidence 765
No 34
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.70 E-value=0.032 Score=55.83 Aligned_cols=173 Identities=12% Similarity=0.048 Sum_probs=111.3
Q ss_pred eEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCc
Q 011732 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSM 123 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~ 123 (478)
..|+++|..+++....+.......+.|++.- .+..+|++|+. .|.|.+|++..
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s--~~~~~l~~~~~----------------dg~i~iwd~~~--------- 165 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDESTYVASVKWS--HDGSFLSVGLG----------------NGLVDIYDVES--------- 165 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCTTCCEEEEEEC--TTSSEEEEEET----------------TSCEEEEETTT---------
T ss_pred CeEEEeeCCCCcEeEeeecCCCCCEEEEEEC--CCCCEEEEECC----------------CCeEEEEECcC---------
Confidence 5799999999999888888777777776543 24578888865 47889998862
Q ss_pred cccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeCCceEEEE
Q 011732 124 TFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLAS 203 (478)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~a 203 (478)
. ..+..+ ....++|.++.. ++.+|+.+
T Consensus 166 ------------------------------------~--------------~~~~~~--~~~~~~v~~~~~-~~~~l~~~ 192 (401)
T 4aez_A 166 ------------------------------------Q--------------TKLRTM--AGHQARVGCLSW-NRHVLSSG 192 (401)
T ss_dssp ------------------------------------C--------------CEEEEE--CCCSSCEEEEEE-ETTEEEEE
T ss_pred ------------------------------------C--------------eEEEEe--cCCCCceEEEEE-CCCEEEEE
Confidence 0 112211 256788999876 56645555
Q ss_pred e-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEE
Q 011732 204 A-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCV 280 (478)
Q Consensus 204 v-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~ 280 (478)
. ...|.+|++..... .+.. +......|.++.. .++++++|..-..|.++..+ ..+....- .....+++++.
T Consensus 193 ~~dg~i~i~d~~~~~~-~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~-~~~~~~v~~~~ 266 (401)
T 4aez_A 193 SRSGAIHHHDVRIANH-QIGT--LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR--SSIPKFTK-TNHNAAVKAVA 266 (401)
T ss_dssp ETTSEEEEEETTSSSC-EEEE--EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--CSSEEEEE-CCCSSCCCEEE
T ss_pred cCCCCEEEEecccCcc-eeeE--EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC--CCCccEEe-cCCcceEEEEE
Confidence 4 56699999984322 1222 2223335666665 46799999988888886543 33322221 23455677777
Q ss_pred eec-CCeEEE-eC--CCCcEEEEecC
Q 011732 281 LMD-VDTAVV-SD--RKGSIAVLSCS 302 (478)
Q Consensus 281 ~ld-~~~~l~-aD--~~gNl~vl~~~ 302 (478)
+-. ...+++ +. .+|.|.++...
T Consensus 267 ~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 267 WCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp ECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred ECCCCCCEEEEecCCCCCEEEEEECC
Confidence 754 334444 33 69999999875
No 35
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.0014 Score=64.50 Aligned_cols=200 Identities=10% Similarity=0.056 Sum_probs=116.8
Q ss_pred eEEEeCCC--CcCEEEEec--CCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEE
Q 011732 9 VRKFHLGG--TPKKVLYHS--ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVV 84 (478)
Q Consensus 9 ir~i~L~~--tp~ki~y~~--~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~V 84 (478)
++.+.++. ....++++| ..+.++.++. -..|+++|..+++.+..+.......+.|++.- .+..+|++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~--pdg~~las 187 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADN-------RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH--KDSLLLAL 187 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEET-------TCCEEEEESSSSCEEEEECCCSSCCCCEEEEC--TTSCEEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeC-------CCcEEEEECCCCcEEEEEecCCCCceEEEEEC--CCCCEEEE
Confidence 44555553 478889999 7777766643 24799999999888665555545456665432 24578888
Q ss_pred eeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCc
Q 011732 85 GTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASC 164 (478)
Q Consensus 85 GT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (478)
|+. .|.|.+|++...+
T Consensus 188 g~~----------------dg~i~iwd~~~~~------------------------------------------------ 203 (343)
T 3lrv_A 188 YSP----------------DGILDVYNLSSPD------------------------------------------------ 203 (343)
T ss_dssp ECT----------------TSCEEEEESSCTT------------------------------------------------
T ss_pred EcC----------------CCEEEEEECCCCC------------------------------------------------
Confidence 853 5789999987310
Q ss_pred CCccccccccceEEEEEEEecCCceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceeeee---cccce--eEEEEEE
Q 011732 165 DGIKLEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAV---GRTRF--MIMLLTA 238 (478)
Q Consensus 165 ~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~---~~~~~--~i~sL~~ 238 (478)
.+ ...+ .....++|++|+--. |.+|+.+....|.+|+++.. +.+..... ...+. ...+...
T Consensus 204 ---~~----~~~~----~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 204 ---QA----SSRF----PVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKD--VGTLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp ---SC----CEEC----CCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSS--TTCBSSCCCBC-----CCEEEEECT
T ss_pred ---CC----ccEE----eccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCC--CcceeecccccccccccceEEEECC
Confidence 00 0011 112468999988554 56577766668999999863 21221111 11111 1244445
Q ss_pred eCCEEEEeec-CCcEEEEEEeccCceEEEEecCCCCceeEEEEee----cCCeEEEeCCCCcEEEEec
Q 011732 239 HFTRIAVGDC-RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM----DVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 239 ~~n~IlvgD~-~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l----d~~~~l~aD~~gNl~vl~~ 301 (478)
.+.++++|.. -..+.++.|+........ ..+..+.+- +...++.+..+|.+.++-.
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDKKTKNWTK-------DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCSEEE-------EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEEEcccccceEe-------cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 5889999777 788999988765554443 112222222 1225555566666665554
No 36
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.67 E-value=0.012 Score=57.53 Aligned_cols=199 Identities=10% Similarity=0.102 Sum_probs=123.3
Q ss_pred eEEEeCCC-CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeee
Q 011732 9 VRKFHLGG-TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTS 87 (478)
Q Consensus 9 ir~i~L~~-tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~ 87 (478)
++.+..+. ....++++|+.+.++++.. ...++++|..+.+....+... ...+.+++. -.+..+|+.|..
T Consensus 115 ~~~~~~~~~~~~~~~~spdg~~l~~g~~-------dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~--spdg~~lasg~~ 184 (321)
T 3ow8_A 115 IKSIDAGPVDAWTLAFSPDSQYLATGTH-------VGKVNIFGVESGKKEYSLDTR-GKFILSIAY--SPDGKYLASGAI 184 (321)
T ss_dssp EEEEECCTTCCCCEEECTTSSEEEEECT-------TSEEEEEETTTCSEEEEEECS-SSCEEEEEE--CTTSSEEEEEET
T ss_pred EEEEeCCCccEEEEEECCCCCEEEEEcC-------CCcEEEEEcCCCceeEEecCC-CceEEEEEE--CCCCCEEEEEcC
Confidence 34454443 5667899999888776632 357999999988876655433 334555432 134578888754
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCc
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI 167 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (478)
.|.|.+|++..
T Consensus 185 ----------------dg~i~iwd~~~----------------------------------------------------- 195 (321)
T 3ow8_A 185 ----------------DGIINIFDIAT----------------------------------------------------- 195 (321)
T ss_dssp ----------------TSCEEEEETTT-----------------------------------------------------
T ss_pred ----------------CCeEEEEECCC-----------------------------------------------------
Confidence 46788988751
Q ss_pred cccccccceEEEEEEE-ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCE
Q 011732 168 KLEETETWQLRLAYST-TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTR 242 (478)
Q Consensus 168 ~~~~~~~~~l~l~~~~-~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~ 242 (478)
.+ +++.. ...++|++++--. |++|+.+. ...|.+|++... +.+.. +......|.++.. .+.+
T Consensus 196 -------~~--~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--~~~~~--~~~h~~~v~~~~~sp~~~~ 262 (321)
T 3ow8_A 196 -------GK--LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--NLAGT--LSGHASWVLNVAFCPDDTH 262 (321)
T ss_dssp -------TE--EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC--CEEEE--ECCCSSCEEEEEECTTSSE
T ss_pred -------Cc--EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--ceeEE--EcCCCCceEEEEECCCCCE
Confidence 01 12222 3567888887554 55444443 356999999752 21222 2222334666655 4678
Q ss_pred EEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecC-CeEEEeCCCCcEEEEecC
Q 011732 243 IAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 243 IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~-~~~l~aD~~gNl~vl~~~ 302 (478)
++.|..-..|.++. ....+....-. .....|.++.+-.+ ..++.+..+|.|.+++.|
T Consensus 263 l~s~s~D~~v~iwd--~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 263 FVSSSSDKSVKVWD--VGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEETTSCEEEEE--TTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEeCCCcEEEEe--CCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 88888888888864 44444333222 23456778877544 478888999999999864
No 37
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.65 E-value=0.021 Score=54.19 Aligned_cols=206 Identities=9% Similarity=0.091 Sum_probs=121.2
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCc----EEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS----VLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGP 92 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~----~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~ 92 (478)
..+.++|+|+.+.+++++. -..|+++|..+.+ .+..+. .....+.|++...-.+..+|+.|..
T Consensus 13 ~v~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~----- 79 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSS-------DQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASY----- 79 (351)
T ss_dssp CEEEEEECSSSSEEEEEET-------TSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEET-----
T ss_pred ceeEEEEcCCCCEEEEeeC-------CCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcC-----
Confidence 6789999999988777653 2579999987653 333332 2234455554321113578887754
Q ss_pred CCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccc
Q 011732 93 AIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEET 172 (478)
Q Consensus 93 ~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 172 (478)
.|.|.+|++...+ . .+.
T Consensus 80 -----------dg~v~vwd~~~~~-------------------------------------------~--~~~------- 96 (351)
T 3f3f_A 80 -----------DKTVKLWEEDPDQ-------------------------------------------E--ECS------- 96 (351)
T ss_dssp -----------TSCEEEEEECTTS-------------------------------------------C--TTS-------
T ss_pred -----------CCeEEEEecCCCc-------------------------------------------c--ccc-------
Confidence 4789999997310 0 000
Q ss_pred ccceEEEEEEE-ecCCceEEEeeeC---CceEEEEe-CCeEEEEeeCCCCcccceeeee-----------cccceeEEEE
Q 011732 173 ETWQLRLAYST-TWPGMVLAICPYL---DRYFLASA-GNAFYVCGFPNDNPQRVRRFAV-----------GRTRFMIMLL 236 (478)
Q Consensus 173 ~~~~l~l~~~~-~~~G~V~ai~~~~---g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~-----------~~~~~~i~sL 236 (478)
..+.+.+... ...++|++++-.. +.+|+++. ...|++|++.... .+..... ......+.++
T Consensus 97 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (351)
T 3f3f_A 97 -GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS--DLRSWTLTSEMKVLSIPPANHLQSDFCL 173 (351)
T ss_dssp -SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT--CTTCCEEEEEEESCSCCCSSCSCCCEEE
T ss_pred -ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH--HhccccccccccccccccCCcccceeEE
Confidence 0233444433 4678999998665 55455544 5679999987632 1211110 0111234444
Q ss_pred EEe-----CCEEEEeecCCcEEEEEEeccCceEEEEe-cCCCCceeEEEEeecC-----CeEEEeCCCCcEEEEecCC
Q 011732 237 TAH-----FTRIAVGDCRDGILFYSYHEDARKLEQIY-CDPSQRLVADCVLMDV-----DTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 237 ~~~-----~n~IlvgD~~~Sv~ll~y~~~~~~L~~va-rD~~~~~vta~~~ld~-----~~~l~aD~~gNl~vl~~~~ 303 (478)
... ++++++|..-..+ ++. .....++..+. -......++++.+-.+ ..++.+..+|.|.+++...
T Consensus 174 ~~~p~~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 174 SWCPSRFSPEKLAVSALEQAI-IYQ-RGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp EECCCSSSCCEEEEEETTEEE-EEE-ECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred EeccCCCCCcEEEEecCCCcE-EEE-ccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 432 7888888887776 332 33344443222 2335667888887655 3688889999999999764
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.64 E-value=0.011 Score=58.01 Aligned_cols=114 Identities=10% Similarity=0.012 Sum_probs=72.3
Q ss_pred ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEec
Q 011732 184 TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHE 259 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~ 259 (478)
...++|++++-.. +.+|+.+. ...|.+|++... +.+.. +......|.++.. .+++++.|..-..|.++..+.
T Consensus 182 ~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~--~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQT--FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--SEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--eeEEE--EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 3568899988665 45344443 567999999762 21222 2222334566655 478999998888888865432
Q ss_pred cCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 260 DARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
...+..+..+.....++++.|- +...++++..+|++.+++..
T Consensus 258 -~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 258 -DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp -TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred -CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 2233344444444567888775 44478888999999999864
No 39
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.022 Score=62.75 Aligned_cols=200 Identities=8% Similarity=0.064 Sum_probs=124.8
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCC--CCcEEEEEECCCC-CceEEEEEEEECCeeEEEEeeecCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL--SGSVLSSFKLELG-ETGKSMELVRVGHEQVLVVGTSLSSGPA 93 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~--t~~~i~~~~l~~~-E~~~s~~~~~l~~~~~l~VGT~~~~g~~ 93 (478)
..+.++|+|+.+.++.++. -+.|+++|.. +++.+.. +..+ ..+.|++...-.+..+|+.|..
T Consensus 11 ~V~~l~~s~dg~~latg~~-------dg~I~vwd~~~~~~~~~~~--l~~h~~~V~~l~~s~~~~~~~l~s~s~------ 75 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSS-------DKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSY------ 75 (753)
T ss_dssp CEEEECCCSSSCCEEEEET-------TTEEEEEEEETTEEEEEEE--ECCCSSCEEEEEECCTTSCSEEEEEET------
T ss_pred eeEEEEECCCCCeEEEEEC-------CCcEEEEecCCCCCcccee--ccCCcCceEEEEecCCCCCCEEEEEeC------
Confidence 5678899999888777653 2578999876 3444433 3333 3344443211112578887754
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
.|.|.+|++..
T Consensus 76 ----------Dg~I~vwd~~~----------------------------------------------------------- 86 (753)
T 3jro_A 76 ----------DGKVLIWKEEN----------------------------------------------------------- 86 (753)
T ss_dssp ----------TSCEEEEEEET-----------------------------------------------------------
T ss_pred ----------CCeEEEEECCC-----------------------------------------------------------
Confidence 57899999972
Q ss_pred cceEEEEE-EEecCCceEEEeeeC---CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe---------
Q 011732 174 TWQLRLAY-STTWPGMVLAICPYL---DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--------- 239 (478)
Q Consensus 174 ~~~l~l~~-~~~~~G~V~ai~~~~---g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--------- 239 (478)
.+...+. .....++|++++-.. |.+|+++. ...|++|++..... .........+..+.++...
T Consensus 87 -~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--~~~~~~~~~~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 87 -GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp -TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC--CCCEEEECCSSCEEEEEECCCC------
T ss_pred -CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC--cceeEeecCCCceEEEEecCcccccccc
Confidence 1222222 234678999988664 55455554 46799999986322 2222222334456666553
Q ss_pred ------CCEEEEeecCCcEEEEEEeccCceEEEEe-cCCCCceeEEEEeecC----CeEEEeCCCCcEEEEecCC
Q 011732 240 ------FTRIAVGDCRDGILFYSYHEDARKLEQIY-CDPSQRLVADCVLMDV----DTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 240 ------~n~IlvgD~~~Sv~ll~y~~~~~~L~~va-rD~~~~~vta~~~ld~----~~~l~aD~~gNl~vl~~~~ 303 (478)
++++++|..-..|.++..+........+. -..+...++++.+-.+ ..++.+..+|.+.+++...
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 57889999888999988765543323222 2334567888887543 4788889999999998765
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.62 E-value=0.042 Score=54.60 Aligned_cols=215 Identities=12% Similarity=0.056 Sum_probs=115.9
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~ 95 (478)
...+.++|+|+.+.++.+.. -..|+++|..+++.+..+.- ....+.|++.- .+..+|+.|..
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~-------d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~l~s~~~-------- 201 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQ-------DMQLKIWSVKDGSNPRTLIG-HRATVTDIAII--DRGRNVLSASL-------- 201 (420)
T ss_dssp SCEEEEEECTTSSEEEEEET-------TSEEEEEETTTCCCCEEEEC-CSSCEEEEEEE--TTTTEEEEEET--------
T ss_pred CccEEEEECCCCCEEEEEeC-------CCeEEEEeCCCCcCceEEcC-CCCcEEEEEEc--CCCCEEEEEcC--------
Confidence 46788999999887666542 25799999998887766542 23445555432 34567776643
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
.|.|.+|++...+ .++ .+ .. ...+.. .-.
T Consensus 202 --------d~~v~iwd~~~~~----------------~~~--~~-------~~-------~~~~~~-----------~v~ 230 (420)
T 3vl1_A 202 --------DGTIRLWECGTGT----------------TIH--TF-------NR-------KENPHD-----------GVN 230 (420)
T ss_dssp --------TSCEEEEETTTTE----------------EEE--EE-------CB-------TTBTTC-----------CEE
T ss_pred --------CCcEEEeECCCCc----------------eeE--Ee-------ec-------CCCCCC-----------Ccc
Confidence 4678888876210 000 00 00 000000 000
Q ss_pred eEEEEEEE------ecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CC-EEE
Q 011732 176 QLRLAYST------TWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FT-RIA 244 (478)
Q Consensus 176 ~l~l~~~~------~~~G~V~ai~~~-~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n-~Il 244 (478)
.+...... ...++|.+++-- .|.+|+++. ...|++|++... +.+... .......+.++... +. +++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~-~~~~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK--EQTIQL-PSKFTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC--CEEEEE-CCTTSSCEEEEEECSSCTTEEE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC--ceeEEc-ccccCCCceeEEEeCCCCCEEE
Confidence 00000000 001333333322 355565554 446999999762 212221 11223456777665 34 899
Q ss_pred EeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 245 VGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 245 vgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+|..-..|.++..+.....+..+.. .....++++.+-+...++.+..+|.+.++....
T Consensus 308 ~g~~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSPECPVGEFLI-NEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEETTSEEEEEETTCTTSCSEEEEE-STTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred EEeCCCeEEEEEcCCCcCchhhhhc-cCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 9998888888765433222333322 123355566555666788889999999999764
No 41
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=97.62 E-value=0.02 Score=56.65 Aligned_cols=187 Identities=10% Similarity=0.001 Sum_probs=114.7
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEE-EEeeecCCCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVL-VVGTSLSSGPAI 94 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l-~VGT~~~~g~~~ 94 (478)
...+.++|+|+.+.++++.. ..++++|..+++.+....+.. +.++. +. ....++ ++|..
T Consensus 20 ~~V~~v~fs~dg~~la~g~~--------~~~~iw~~~~~~~~~~~~~~~---~~~~~-~~-~~~~~~~~~~~~------- 79 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTL--------KSFEIYNVHPVAHIMSQEMRH---LSKVR-ML-HRTNYVAFVTGV------- 79 (355)
T ss_dssp CCCCEEEECTTSSEEEEECS--------SEEEEEEETTEEEEEEEECSC---CCEEE-EC-TTSSEEEEECSS-------
T ss_pred CceEEEEECCCCCEEEEEcC--------CEEEEEecCCcceeeeeecCC---eEEEE-Ec-CCCCEEEEEECC-------
Confidence 47889999999998877632 246899988877766655542 21211 11 233444 44522
Q ss_pred CCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccccc
Q 011732 95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET 174 (478)
Q Consensus 95 ~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 174 (478)
.|.|.+|++..
T Consensus 80 ---------d~~v~iWd~~~------------------------------------------------------------ 90 (355)
T 3vu4_A 80 ---------KEVVHIWDDVK------------------------------------------------------------ 90 (355)
T ss_dssp ---------TTEEEEEETTT------------------------------------------------------------
T ss_pred ---------ccEEEEEECCC------------------------------------------------------------
Confidence 35888888752
Q ss_pred ceEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEE--eecCCcE
Q 011732 175 WQLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAV--GDCRDGI 252 (478)
Q Consensus 175 ~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Ilv--gD~~~Sv 252 (478)
. +.+.+....++|.++..-.+. ++++...++++|++.... +.+..... +..+..+.. +++++ |..-..|
T Consensus 91 ~--~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~i~i~d~~~~~-~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 91 K--QDVSRIKVDAPVKDLFLSREF-IVVSYGDVISVFKFGNPW-KRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp T--EEEEEEECSSCEEEEEECSSE-EEEEETTEEEEEESSTTC-CBSSCCEE---EEEEEEEET--TEEEEEESSCTTCE
T ss_pred C--cEEEEEECCCceEEEEEcCCE-EEEEEcCEEEEEECCCCc-eeeEEecc---CCceEEEEc--cEEEEeCCCcCcEE
Confidence 0 123344578899999877677 888899999999998631 22333222 333444443 66766 5666677
Q ss_pred EEEEEeccC------c-----e----EEEEecCCCCceeEEEEee-cCCeEEEeCCCCc-EEEEecC
Q 011732 253 LFYSYHEDA------R-----K----LEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGS-IAVLSCS 302 (478)
Q Consensus 253 ~ll~y~~~~------~-----~----L~~varD~~~~~vta~~~l-d~~~~l~aD~~gN-l~vl~~~ 302 (478)
.++...... . . +..+ ..+...++++.+- |...++.+..+|. +.+++..
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~--~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLI--KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp EEEECCC------------------CCEEE--CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred EEEECCCCCccccccccccccccCcccEEE--EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 776554211 0 0 1222 2345567788775 3446788889998 9998864
No 42
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.61 E-value=0.028 Score=54.85 Aligned_cols=190 Identities=15% Similarity=0.111 Sum_probs=114.3
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCCCCCC
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~~~~ 96 (478)
...+.++|..+.++.+.. -..|+++|..+++.+..+...+.. +.++ .+. +..+|+.|+.
T Consensus 83 v~~~~~~~~~~~l~s~s~-------D~~i~lWd~~~~~~~~~~~~~~~~-~~~~---~~spdg~~l~~g~~--------- 142 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSSL-------DAHIRLWDLENGKQIKSIDAGPVD-AWTL---AFSPDSQYLATGTH--------- 142 (321)
T ss_dssp EEEEEECSSSSEEEEEET-------TSEEEEEETTTTEEEEEEECCTTC-CCCE---EECTTSSEEEEECT---------
T ss_pred EEEEEECCCCCEEEEEeC-------CCcEEEEECCCCCEEEEEeCCCcc-EEEE---EECCCCCEEEEEcC---------
Confidence 445556666554443321 358999999999888777655433 3332 233 4578887754
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
.|.+.+|++.. . ..
T Consensus 143 -------dg~v~i~~~~~---------------------------------------------~--------------~~ 156 (321)
T 3ow8_A 143 -------VGKVNIFGVES---------------------------------------------G--------------KK 156 (321)
T ss_dssp -------TSEEEEEETTT---------------------------------------------C--------------SE
T ss_pred -------CCcEEEEEcCC---------------------------------------------C--------------ce
Confidence 57888988762 0 01
Q ss_pred EEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcE
Q 011732 177 LRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGI 252 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv 252 (478)
.. .-......|.+++--. |++|+.+. ...|.+|++.. .+.+....... ..|.++.. .+.+++.|..-..|
T Consensus 157 ~~--~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~--~~~~~~~~~h~--~~v~~l~~spd~~~l~s~s~dg~i 230 (321)
T 3ow8_A 157 EY--SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT--GKLLHTLEGHA--MPIRSLTFSPDSQLLVTASDDGYI 230 (321)
T ss_dssp EE--EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCS--SCCCEEEECTTSCEEEEECTTSCE
T ss_pred eE--EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEEcccC--CceeEEEEcCCCCEEEEEcCCCeE
Confidence 11 1123446677777544 56565554 56699999875 23233222222 23444444 46788899888888
Q ss_pred EEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 253 LFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 253 ~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
.++.. ....+...- .....+++++.+- +...++.+..+|.+.+++..
T Consensus 231 ~iwd~--~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 231 KIYDV--QHANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp EEEET--TTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEC--CCcceeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 88654 333333221 2245578888875 44578888899999999875
No 43
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.61 E-value=0.024 Score=59.17 Aligned_cols=284 Identities=13% Similarity=0.110 Sum_probs=145.7
Q ss_pred CCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCC---CceEEEEEEEECCeeEEEEeeecCC
Q 011732 14 LGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG---ETGKSMELVRVGHEQVLVVGTSLSS 90 (478)
Q Consensus 14 L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~---E~~~s~~~~~l~~~~~l~VGT~~~~ 90 (478)
.......++++ +.+.+++++. ...|+++|..+++.+..+..... ..+.++.. .+..++++|+.
T Consensus 252 ~~~~v~~~~~~-~~~~l~~~~~-------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~--- 317 (615)
T 1pgu_A 252 VQGGIFALSWL-DSQKFATVGA-------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA---TGNGRIISLSL--- 317 (615)
T ss_dssp CCSCEEEEEES-SSSEEEEEET-------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE---EETTEEEEEET---
T ss_pred cCCceEEEEEc-CCCEEEEEcC-------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe---CCCCeEEEEEC---
Confidence 33466777888 6666665542 25799999999999988887742 33444332 25567887765
Q ss_pred CCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccc
Q 011732 91 GPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLE 170 (478)
Q Consensus 91 g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 170 (478)
.|.|.+|++...+. -... ..-...+.. ... |. ..+... +|. +
T Consensus 318 -------------~g~i~~~d~~~~~~----~~~~--~~~~~~v~~------~~~-~~------l~~~~~----dg~-i- 359 (615)
T 1pgu_A 318 -------------DGTLNFYELGHDEV----LKTI--SGHNKGITA------LTV-NP------LISGSY----DGR-I- 359 (615)
T ss_dssp -------------TSCEEEEETTEEEE----EEEE--CCCSSCEEE------EET-TT------TEEEET----TSC-E-
T ss_pred -------------CCCEEEEECCCCcE----EEEE--eCCCCCEEE------EEe-cC------cEEECC----CCe-E-
Confidence 45677777542100 0000 000000000 000 00 000000 111 0
Q ss_pred ccccceEEEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCC-------------cc----------------c
Q 011732 171 ETETWQLRLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDN-------------PQ----------------R 220 (478)
Q Consensus 171 ~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~-------------~~----------------~ 220 (478)
.-|.+..+. ....++|.+++--.+.+|+++. ...+.+|++.... .+ .
T Consensus 360 --~~w~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 436 (615)
T 1pgu_A 360 --MEWSSSSMH-QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 436 (615)
T ss_dssp --EETTTTEEE-CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTT
T ss_pred --EEEEchhhc-CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccC
Confidence 001111222 4566788888875455444443 5567777765310 00 0
Q ss_pred ceeeeecccceeEEEEEEeCCEEEEeec-CCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEE
Q 011732 221 VRRFAVGRTRFMIMLLTAHFTRIAVGDC-RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAV 298 (478)
Q Consensus 221 L~~~a~~~~~~~i~sL~~~~n~IlvgD~-~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~v 298 (478)
-+....+.....+.++...++++++|.. -..+.++.. ....+....-......++++.+- +...++.++.+|.+.+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 514 (615)
T 1pgu_A 437 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL--SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL 514 (615)
T ss_dssp CCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET--TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEEC--CCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEE
Confidence 0011111234456666666999999998 888888654 34444433334456678888875 4457888899999999
Q ss_pred EecCCCcccCCCCCccceeeeeeecCccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEEe
Q 011732 299 LSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIP 373 (478)
Q Consensus 299 l~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~p 373 (478)
++.... + .+......| ...|+++... |....... .......++.++.+|.|-+.-.
T Consensus 515 w~~~~~-------~-~~~~~~~~h-~~~v~~~~~s------p~~~~~~~----~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 515 YDLQSR-------E-VKTSRWAFR-TSKINAISWK------PAEKGANE----EEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp EETTTT-------E-EEECCSCCC-SSCEEEEEEC------CCC----------CCSCCEEEEEETTSCEEEEES
T ss_pred eeCCCC-------c-ceeEeecCC-CCceeEEEEc------Cccccccc----cccCCCEEEEEcCCCcEEEEEC
Confidence 987531 1 111111112 3455665421 10000000 0013467888888998887754
No 44
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.0083 Score=57.96 Aligned_cols=210 Identities=9% Similarity=0.068 Sum_probs=120.7
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEE-----------ECCC-CCceEEEEEEE
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF-----------KLEL-GETGKSMELVR 75 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~-----------~l~~-~E~~~s~~~~~ 75 (478)
.++.+.....+..++++|+.+.+++++.+.. .....|+++|..+......+ .... ...+.++ .
T Consensus 108 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 182 (369)
T 3zwl_B 108 CVATWKSPVPVKRVEFSPCGNYFLAILDNVM--KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA---G 182 (369)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEECCBT--TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE---E
T ss_pred EEEEeecCCCeEEEEEccCCCEEEEecCCcc--CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE---E
Confidence 3456667778899999999998888765311 12357888886554322111 1111 1134443 3
Q ss_pred EC-CeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCc
Q 011732 76 VG-HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSS 154 (478)
Q Consensus 76 l~-~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (478)
+. +..++++|+. .|.|.+|++...
T Consensus 183 ~~~~~~~l~~~~~----------------dg~i~i~d~~~~--------------------------------------- 207 (369)
T 3zwl_B 183 WSTKGKYIIAGHK----------------DGKISKYDVSNN--------------------------------------- 207 (369)
T ss_dssp ECGGGCEEEEEET----------------TSEEEEEETTTT---------------------------------------
T ss_pred EcCCCCEEEEEcC----------------CCEEEEEECCCC---------------------------------------
Confidence 33 3467777744 578999988620
Q ss_pred cCCCCCCCCcCCccccccccceEEEEEE-EecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccce
Q 011732 155 LCSSPDDASCDGIKLEETETWQLRLAYS-TTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRF 231 (478)
Q Consensus 155 ~~~~~~~~~~~g~~~~~~~~~~l~l~~~-~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~ 231 (478)
.+ .+.. ....++|.+++-.. +.+|+++. ...|.+|++.. .+.+.... ...+.
T Consensus 208 --------------------~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~-~~~~~ 262 (369)
T 3zwl_B 208 --------------------YE--YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST--LQVLKKYE-TDCPL 262 (369)
T ss_dssp --------------------TE--EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEE-CSSCE
T ss_pred --------------------cE--eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC--Cceeeeec-CCCCc
Confidence 01 1121 23578899888654 55455554 56799999976 22222222 23333
Q ss_pred eEEEEEEeCCEEEEeecCCcEE------------EEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEE
Q 011732 232 MIMLLTAHFTRIAVGDCRDGIL------------FYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAV 298 (478)
Q Consensus 232 ~i~sL~~~~n~IlvgD~~~Sv~------------ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~v 298 (478)
....+...+.++++|....+.. +.-|+....+....-. .....++++.+- +...++.++.+|.|.+
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ-GHFGPLNTVAISPQGTSYASGGEDGFIRL 341 (369)
T ss_dssp EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-cccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence 3444445578999988777432 3334443333332222 234467777765 4447888899999999
Q ss_pred EecCC
Q 011732 299 LSCSD 303 (478)
Q Consensus 299 l~~~~ 303 (478)
++...
T Consensus 342 w~~~~ 346 (369)
T 3zwl_B 342 HHFEK 346 (369)
T ss_dssp EEECH
T ss_pred EECcc
Confidence 99754
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.58 E-value=0.079 Score=52.95 Aligned_cols=199 Identities=10% Similarity=0.086 Sum_probs=117.8
Q ss_pred eCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCC--------------ceEEEEEEEEC-
Q 011732 13 HLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGE--------------TGKSMELVRVG- 77 (478)
Q Consensus 13 ~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E--------------~~~s~~~~~l~- 77 (478)
.-......++|+|+.+.++.++ + ..+++++..+++.+..+.-.... ....+..+.+.
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~-------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-N-------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-B-------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred CCCCEEEEEEECCCCCEEEEEc-C-------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 3445678899999999877653 1 36889998888877654322111 00012333443
Q ss_pred CeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCC
Q 011732 78 HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCS 157 (478)
Q Consensus 78 ~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (478)
+..+|+.|.. .|.|.+|++..
T Consensus 134 dg~~l~s~~~----------------d~~i~iwd~~~------------------------------------------- 154 (393)
T 1erj_A 134 DGKFLATGAE----------------DRLIRIWDIEN------------------------------------------- 154 (393)
T ss_dssp TSSEEEEEET----------------TSCEEEEETTT-------------------------------------------
T ss_pred CCCEEEEEcC----------------CCeEEEEECCC-------------------------------------------
Confidence 4467777643 46788888752
Q ss_pred CCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEE
Q 011732 158 SPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIML 235 (478)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~s 235 (478)
.++.. .-....++|++++-.. |.+|+.+. ..+|.+|++... +..... ...-.+.+
T Consensus 155 -----------------~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~--~~~~~~---~~~~~v~~ 211 (393)
T 1erj_A 155 -----------------RKIVM-ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG--QCSLTL---SIEDGVTT 211 (393)
T ss_dssp -----------------TEEEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEE---ECSSCEEE
T ss_pred -----------------CcEEE-EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC--eeEEEE---EcCCCcEE
Confidence 01111 1124568899988664 45455554 456999998752 212211 22223445
Q ss_pred EEE---eCCEEEEeecCCcEEEEEEeccCceEEEEe-c-----CCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 236 LTA---HFTRIAVGDCRDGILFYSYHEDARKLEQIY-C-----DPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 236 L~~---~~n~IlvgD~~~Sv~ll~y~~~~~~L~~va-r-----D~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
+.. .+++|++|..-..|.++ +...+.+...- . ..+..+++++.|- +...++.+..+|.+.+++...
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iw--d~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVW--DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEE--ETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEECCCCCEEEEEcCCCcEEEE--ECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 544 45788999888888775 44444333221 1 2345578888875 444788889999999998754
No 46
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.54 E-value=0.0083 Score=59.30 Aligned_cols=197 Identities=11% Similarity=0.098 Sum_probs=123.9
Q ss_pred CCcCEEEEecCC-CeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECC-CCCceEEEEEEEECCeeEEEEeeecCCCCC
Q 011732 16 GTPKKVLYHSES-RLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE-LGETGKSMELVRVGHEQVLVVGTSLSSGPA 93 (478)
Q Consensus 16 ~tp~ki~y~~~~-~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~-~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~ 93 (478)
.....++++|+. +.++.++. -..|+++|..+.+....+.+. ....+.|++.. -.+..+|+.|..
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~------ 139 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSK-------GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFN-QFNTNQLFVSSI------ 139 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEB-------TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEE-TTEEEEEEEEET------
T ss_pred CCEEEEEECCCCCCEEEEEcC-------CCeEEEEeCCCcccceeeecCCcCCceeEEEeC-CCCCCEEEEEeC------
Confidence 367889999998 66666543 247999999998887777653 34555555432 114578887744
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
.|.|.+|++..
T Consensus 140 ----------d~~i~iwd~~~----------------------------------------------------------- 150 (383)
T 3ei3_B 140 ----------RGATTLRDFSG----------------------------------------------------------- 150 (383)
T ss_dssp ----------TTEEEEEETTS-----------------------------------------------------------
T ss_pred ----------CCEEEEEECCC-----------------------------------------------------------
Confidence 47888988861
Q ss_pred cceEEEEE-EEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CC-EEEEee
Q 011732 174 TWQLRLAY-STTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FT-RIAVGD 247 (478)
Q Consensus 174 ~~~l~l~~-~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n-~IlvgD 247 (478)
..++.+. .....++|.+++-.. +.+|+++. ...|.+|++.. +.+.... .....|.++... +. +++.|.
T Consensus 151 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 151 -SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG---HEIFKEK--LHKAKVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp -CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS---CEEEEEE--CSSSCEEEEEECSSCTTEEEEEE
T ss_pred -CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC---CEEEEec--cCCCcEEEEEECCCCCCEEEEEe
Confidence 1222222 123457788887654 45455554 46799999853 2233322 223356666654 44 788888
Q ss_pred cCCcEEEEEEeccC--ceEEEEecCCCCceeEEEEeec--CCeEEEeCCCCcEEEEecCC
Q 011732 248 CRDGILFYSYHEDA--RKLEQIYCDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 248 ~~~Sv~ll~y~~~~--~~L~~varD~~~~~vta~~~ld--~~~~l~aD~~gNl~vl~~~~ 303 (478)
.-..|.++..+... ..+...- .....++++.+-. ...++++..+|.|.+++...
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 225 VDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp TTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred CCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 88888886654321 3333222 2556788888753 45788889999999999754
No 47
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.52 E-value=0.021 Score=56.62 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=67.5
Q ss_pred EecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--C-CEEEEeecCCcEEEEEE
Q 011732 183 TTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--F-TRIAVGDCRDGILFYSY 257 (478)
Q Consensus 183 ~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~-n~IlvgD~~~Sv~ll~y 257 (478)
....++|++|+-.. |++|+.+. ...|.+|++.. .+.+... ....-.|.++... + ++++.|..-..|.++
T Consensus 124 ~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--~~~~~~~--~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw-- 197 (344)
T 4gqb_B 124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--QVVLSSY--RAHAAQVTCVAASPHKDSVFLSCSEDNRILLW-- 197 (344)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEE--CCCSSCEEEEEECSSCTTEEEEEETTSCEEEE--
T ss_pred cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEEEEE--cCcCCceEEEEecCCCCCceeeeccccccccc--
Confidence 45789999998654 56455554 45699999976 2223322 1223356666654 3 456667776777775
Q ss_pred eccCc-eEEEEecCCCCceeEEEEeec-CC-eEEEeCCCCcEEEEecC
Q 011732 258 HEDAR-KLEQIYCDPSQRLVADCVLMD-VD-TAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 258 ~~~~~-~L~~varD~~~~~vta~~~ld-~~-~~l~aD~~gNl~vl~~~ 302 (478)
+.... ....+........++++.+-. +. .++.+..+|.|.+++..
T Consensus 198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 44332 333444444445677777653 33 45667899999999864
No 48
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.50 E-value=0.025 Score=57.17 Aligned_cols=192 Identities=10% Similarity=0.092 Sum_probs=114.5
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
.+..++|+|+.+.++.+.. -..|+++|..+++.+..+.-. ...+.|++.- .+..+|+.|..
T Consensus 110 ~V~~~~~~p~~~~l~s~s~-------Dg~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~--~~~~~l~sgs~--------- 170 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASE-------DATIKVWDYETGDFERTLKGH-TDSVQDISFD--HSGKLLASCSA--------- 170 (410)
T ss_dssp CEEEEEECSSSSEEEEEES-------SSCEEEEETTTCCCCEEECCC-SSCEEEEEEC--TTSSEEEEEET---------
T ss_pred cEEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCcEEEEEecc-CCcEEEEEEc--CCCCEEEEEeC---------
Confidence 4567889998887666643 247999999998877665432 2345554432 34568887754
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
-|.|.+|++... ..
T Consensus 171 -------D~~i~iwd~~~~-----------------------------------------------------------~~ 184 (410)
T 1vyh_C 171 -------DMTIKLWDFQGF-----------------------------------------------------------EC 184 (410)
T ss_dssp -------TSCCCEEETTSS-----------------------------------------------------------CE
T ss_pred -------CCeEEEEeCCCC-----------------------------------------------------------ce
Confidence 466788887520 01
Q ss_pred EEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcE
Q 011732 177 LRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGI 252 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv 252 (478)
+..+ ....++|.+++-.. |.+|+.|. ...|.+|++... +.++... .....+..+.. .+++|+.|..-..|
T Consensus 185 ~~~~--~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~--~~~~~~~--~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 185 IRTM--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFT--GHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp EECC--CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--CEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eEEE--cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEe--CCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 1111 23467888888664 45455554 566999999752 2232221 22223444444 46788899888888
Q ss_pred EEEEEeccCceEEEEecCCCCceeEEEEeec---------------------CCeEEEeCCCCcEEEEecC
Q 011732 253 LFYSYHEDARKLEQIYCDPSQRLVADCVLMD---------------------VDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 253 ~ll~y~~~~~~L~~varD~~~~~vta~~~ld---------------------~~~~l~aD~~gNl~vl~~~ 302 (478)
.++... .......- ......+.++.+-. ...++.+..+|.+.+++..
T Consensus 259 ~vwd~~--~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 259 RVWVVA--TKECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp EEEETT--TCCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred EEEECC--CCceeeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 886543 33222211 12334566665532 2357888889999999864
No 49
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.49 E-value=0.024 Score=55.03 Aligned_cols=201 Identities=7% Similarity=0.025 Sum_probs=122.0
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCC-CceEEEEEEEECCeeEEEEeeecCCCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG-ETGKSMELVRVGHEQVLVVGTSLSSGPAI 94 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~-E~~~s~~~~~l~~~~~l~VGT~~~~g~~~ 94 (478)
..+..++++|+.+.++.++. ...|+++|..+.+....+.+... ..+.++... .+..+|++|+.
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~------- 116 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGT-------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWA--PNEKKFAVGSG------- 116 (372)
T ss_dssp SCEEEEEEETTTTEEEEEET-------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC--TTSSEEEEEET-------
T ss_pred CcccEEEEeCCCCEEEEEcC-------CCeEEEEECCCCeeeeeEEeecCCCceeEEEEC--CCCCEEEEEeC-------
Confidence 36788999998888777653 24799999888887666665443 445444332 24578888854
Q ss_pred CCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccccc
Q 011732 95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET 174 (478)
Q Consensus 95 ~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 174 (478)
.|.+.+|++... . .
T Consensus 117 ---------d~~v~i~d~~~~--------------------------------------------~-------------~ 130 (372)
T 1k8k_C 117 ---------SRVISICYFEQE--------------------------------------------N-------------D 130 (372)
T ss_dssp ---------TSSEEEEEEETT--------------------------------------------T-------------T
T ss_pred ---------CCEEEEEEecCC--------------------------------------------C-------------c
Confidence 477999999831 0 0
Q ss_pred ceEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCC----------------CcccceeeeecccceeEEEE
Q 011732 175 WQLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPND----------------NPQRVRRFAVGRTRFMIMLL 236 (478)
Q Consensus 175 ~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~----------------~~~~L~~~a~~~~~~~i~sL 236 (478)
..+.........++|++++-.. +.+|+++. ...|++|++... ..+.+.. +......+.++
T Consensus 131 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~ 208 (372)
T 1k8k_C 131 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE--SSSSCGWVHGV 208 (372)
T ss_dssp EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE--CCCCSSCEEEE
T ss_pred ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe--cCCCCCeEEEE
Confidence 1111111233478899988664 45455554 567999996410 0111221 11223346666
Q ss_pred EE--eCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 237 TA--HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 237 ~~--~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
.. .+++|++|..-..+.++..+. ...+..+. .....++++.+-.++.++++-.+|.+.+++...
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADADK-KMAVATLA--SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGG-TTEEEEEE--CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EECCCCCEEEEEeCCCEEEEEECCC-CceeEEEc--cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 55 467999998888887765432 22333332 234457777776555555555899999998765
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.49 E-value=0.0073 Score=59.60 Aligned_cols=113 Identities=9% Similarity=0.037 Sum_probs=71.2
Q ss_pred CCceEEEeeeC-CceEEEEeC----CeEEEEeeCCCCcccceeeee-----------cccceeEEEEEEe--CCEEEEee
Q 011732 186 PGMVLAICPYL-DRYFLASAG----NAFYVCGFPNDNPQRVRRFAV-----------GRTRFMIMLLTAH--FTRIAVGD 247 (478)
Q Consensus 186 ~G~V~ai~~~~-g~~Ll~avg----~~l~v~~l~~~~~~~L~~~a~-----------~~~~~~i~sL~~~--~n~IlvgD 247 (478)
.++|.+++-.. +.+|+++.. ..|++|++... +.+..... +.....|.++... ++++++|.
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 310 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 310 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCC--cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence 78899888654 565655554 47999999752 22222211 0023356666654 78999998
Q ss_pred cCCcEEEEEEeccCceEEEEec----C-CC---------------CceeEEEEeecC-----------CeEEEeCCCCcE
Q 011732 248 CRDGILFYSYHEDARKLEQIYC----D-PS---------------QRLVADCVLMDV-----------DTAVVSDRKGSI 296 (478)
Q Consensus 248 ~~~Sv~ll~y~~~~~~L~~var----D-~~---------------~~~vta~~~ld~-----------~~~l~aD~~gNl 296 (478)
.-..|.++. ....+....-. + .. ...++++.+..+ ..++.+..+|.|
T Consensus 311 ~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i 388 (397)
T 1sq9_A 311 WDGKLRFWD--VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 388 (397)
T ss_dssp TTSEEEEEE--TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred CCCeEEEEE--cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence 777777754 43443333322 1 12 567888888655 478888999999
Q ss_pred EEEecC
Q 011732 297 AVLSCS 302 (478)
Q Consensus 297 ~vl~~~ 302 (478)
.+++..
T Consensus 389 ~iw~~~ 394 (397)
T 1sq9_A 389 RWFREA 394 (397)
T ss_dssp EEEEEE
T ss_pred EEEEcC
Confidence 999864
No 51
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.48 E-value=0.03 Score=56.59 Aligned_cols=191 Identities=8% Similarity=0.066 Sum_probs=114.4
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~~~ 95 (478)
....++|+|+.+.++.++. -..|+++|..+++.+..+.-. ...+.|+ .+. +..+|+.|..
T Consensus 152 ~V~~v~~~~~~~~l~sgs~-------D~~i~iwd~~~~~~~~~~~~h-~~~V~~v---~~~p~~~~l~s~s~-------- 212 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSA-------DMTIKLWDFQGFECIRTMHGH-DHNVSSV---SIMPNGDHIVSASR-------- 212 (410)
T ss_dssp CEEEEEECTTSSEEEEEET-------TSCCCEEETTSSCEEECCCCC-SSCEEEE---EECSSSSEEEEEET--------
T ss_pred cEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCceeEEEcCC-CCCEEEE---EEeCCCCEEEEEeC--------
Confidence 5678899998887666543 246899999988877654322 2234443 333 4467776643
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
-|.|.+|++.. . .
T Consensus 213 --------D~~i~~wd~~~---------------------------------------------~--------------~ 225 (410)
T 1vyh_C 213 --------DKTIKMWEVQT---------------------------------------------G--------------Y 225 (410)
T ss_dssp --------TSEEEEEETTT---------------------------------------------C--------------C
T ss_pred --------CCeEEEEECCC---------------------------------------------C--------------c
Confidence 47899998862 0 1
Q ss_pred eEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--------------
Q 011732 176 QLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-------------- 239 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-------------- 239 (478)
.++.+ ....+.|.++..-. |.+|+.+. ...|.+|++... + ... .+......+.++...
T Consensus 226 ~~~~~--~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~--~-~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 226 CVKTF--TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK--E-CKA-ELREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp EEEEE--ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--C-EEE-EECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred EEEEE--eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC--c-eee-EecCCCceEEEEEEcCcccccchhhhccc
Confidence 11111 23567788877654 45344443 456999998752 1 111 121222344454432
Q ss_pred --------CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEecC
Q 011732 240 --------FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 240 --------~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~ 302 (478)
+.+++.|..-..|.++. ...+.....- ..+..+++++.+-. ...++.+..+|.|.+++..
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd--~~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWD--VSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEE--TTTTEEEEEE-ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred cccccCCCCCEEEEEeCCCeEEEEE--CCCCceEEEE-ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 56888888888887754 3333332211 12455788887753 4478888999999999874
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.47 E-value=0.061 Score=53.76 Aligned_cols=194 Identities=10% Similarity=0.075 Sum_probs=115.2
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCC
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPS 97 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~ 97 (478)
.+.++|+|+.+.++.+.. -..|+++|..+++.+..+.-. ...+.|++. ..+..+|+.|..
T Consensus 126 v~~v~~s~dg~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~--~p~~~~l~s~s~---------- 185 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAE-------DRLIRIWDIENRKIVMILQGH-EQDIYSLDY--FPSGDKLVSGSG---------- 185 (393)
T ss_dssp EEEEEECTTSSEEEEEET-------TSCEEEEETTTTEEEEEECCC-SSCEEEEEE--CTTSSEEEEEET----------
T ss_pred EEEEEECCCCCEEEEEcC-------CCeEEEEECCCCcEEEEEccC-CCCEEEEEE--cCCCCEEEEecC----------
Confidence 568899999988776643 247999999998876654322 223444432 134467776643
Q ss_pred CCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceE
Q 011732 98 GEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQL 177 (478)
Q Consensus 98 ~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 177 (478)
-|.|.+|++.. .+.
T Consensus 186 ------d~~v~iwd~~~------------------------------------------------------------~~~ 199 (393)
T 1erj_A 186 ------DRTVRIWDLRT------------------------------------------------------------GQC 199 (393)
T ss_dssp ------TSEEEEEETTT------------------------------------------------------------TEE
T ss_pred ------CCcEEEEECCC------------------------------------------------------------Cee
Confidence 47889998752 011
Q ss_pred EEEEEEecCCceEEEeee--CCceEEEEe-CCeEEEEeeCCCCcccceeeee-----cccceeEEEEEE--eCCEEEEee
Q 011732 178 RLAYSTTWPGMVLAICPY--LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAV-----GRTRFMIMLLTA--HFTRIAVGD 247 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~--~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~-----~~~~~~i~sL~~--~~n~IlvgD 247 (478)
.......+.|.+++-. .|++|+++. ...|.+|++... +.+..... ......|.++.. .+.+|+.|.
T Consensus 200 --~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~--~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 200 --SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG--FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp --EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC--CEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred --EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 2223456778887765 466455554 566999998752 21222110 111224566655 467899999
Q ss_pred cCCcEEEEEEeccCc----------eEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 248 CRDGILFYSYHEDAR----------KLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 248 ~~~Sv~ll~y~~~~~----------~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
.-..|.++..+.... .... .-..+..+++++.+- +...++.+..+|.+.+++..
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEV-TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp TTSEEEEEEC---------------CEEE-EEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceE-EEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 888898876543211 1111 111234467777764 44477888899999998864
No 53
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.46 E-value=0.087 Score=50.66 Aligned_cols=205 Identities=10% Similarity=0.095 Sum_probs=115.4
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCc--------eEEEEEEEECCe
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGET--------GKSMELVRVGHE 79 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~--------~~s~~~~~l~~~ 79 (478)
.++.++.+..|..++++|+.+.++|.... ...|.++|..+++.+..+.+..... +.++.. -.+.
T Consensus 81 ~~~~~~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg 152 (353)
T 3vgz_A 81 VTQAIHNDLKPFGATINNTTQTLWFGNTV------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA--DDAT 152 (353)
T ss_dssp EEEEEEESSCCCSEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE--ETTT
T ss_pred EEEEEecCCCcceEEECCCCCEEEEEecC------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE--CCCC
Confidence 46778888899999999999966665431 2489999999999999888865432 344322 1233
Q ss_pred eEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCC
Q 011732 80 QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSP 159 (478)
Q Consensus 80 ~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (478)
.+++++... ..|+|++|+...
T Consensus 153 ~~l~~~~~~--------------~~~~i~~~d~~~--------------------------------------------- 173 (353)
T 3vgz_A 153 NTVYISGIG--------------KESVIWVVDGGN--------------------------------------------- 173 (353)
T ss_dssp TEEEEEEES--------------SSCEEEEEETTT---------------------------------------------
T ss_pred CEEEEEecC--------------CCceEEEEcCCC---------------------------------------------
Confidence 456665431 257788887651
Q ss_pred CCCCcCCccccccccceEEEEEEEe-cCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCcccceeeeecc--cceeEE
Q 011732 160 DDASCDGIKLEETETWQLRLAYSTT-WPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGR--TRFMIM 234 (478)
Q Consensus 160 ~~~~~~g~~~~~~~~~~l~l~~~~~-~~G~V~ai~~~-~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~--~~~~i~ 234 (478)
.+ .+...+ ....+.++.-- .|++|+++. +..|++|+... .+.+....... ....+.
T Consensus 174 ---------------~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~ 234 (353)
T 3vgz_A 174 ---------------IK--LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD--NKILSRKKLLDDGKEHFFI 234 (353)
T ss_dssp ---------------TE--EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT--TEEEEEEECCCSSSCCCEE
T ss_pred ---------------Cc--eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC--CeEEEEEEcCCCCCCcccc
Confidence 01 112222 12224444333 355465554 45688888765 22222222111 122344
Q ss_pred EEEE--eCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeC-CCCcEEEEecC
Q 011732 235 LLTA--HFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSD-RKGSIAVLSCS 302 (478)
Q Consensus 235 sL~~--~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD-~~gNl~vl~~~ 302 (478)
.+.. .++++++++...+ .+..|+...+++...-.-..+ .++.+- |.+.+++++ .++.+.+++..
T Consensus 235 ~~~~s~dg~~l~~~~~~~~-~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 235 NISLDTARQRAFITDSKAA-EVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EEEEETTTTEEEEEESSSS-EEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eEEECCCCCEEEEEeCCCC-EEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 4444 4788999986633 244466655554433222222 233443 334455555 57888888753
No 54
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.46 E-value=0.0032 Score=60.98 Aligned_cols=233 Identities=10% Similarity=0.093 Sum_probs=126.8
Q ss_pred eEEEe-CCCCcCEEEEec-CCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEE--CCCCCceEEEEEEEECCeeEEEE
Q 011732 9 VRKFH-LGGTPKKVLYHS-ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFK--LELGETGKSMELVRVGHEQVLVV 84 (478)
Q Consensus 9 ir~i~-L~~tp~ki~y~~-~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~--l~~~E~~~s~~~~~l~~~~~l~V 84 (478)
++.+. -......++++| +.+.++.++. -..|+++|..+++.+..+. -.....+.+++.- .+..+|+.
T Consensus 108 ~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~ 178 (366)
T 3k26_A 108 IKHYVGHGNAINELKFHPRDPNLLLSVSK-------DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD--LLGEKIMS 178 (366)
T ss_dssp EEEEESCCSCEEEEEECSSCTTEEEEEET-------TSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC--TTSSEEEE
T ss_pred eeeecCCCCcEEEEEECCCCCCEEEEEeC-------CCeEEEEEeecCeEEEEecccccccCceeEEEEC--CCCCEEEE
Confidence 34444 344788899999 6666655542 2579999999988877663 2234455554332 24467777
Q ss_pred eeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCc
Q 011732 85 GTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASC 164 (478)
Q Consensus 85 GT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (478)
|.. .|.|.+|++...+. ...+.......|.... .....
T Consensus 179 ~~~----------------dg~i~i~d~~~~~~------------------~~~~~~~~~~~~~~~~----~~~~~---- 216 (366)
T 3k26_A 179 CGM----------------DHSLKLWRINSKRM------------------MNAIKESYDYNPNKTN----RPFIS---- 216 (366)
T ss_dssp EET----------------TSCEEEEESCSHHH------------------HHHHHHHHTCCGGGCS----SCCCC----
T ss_pred ecC----------------CCCEEEEECCCCcc------------------ccccceeEEecCCCCc----ccccc----
Confidence 743 47899999873210 0000000000111000 00000
Q ss_pred CCccccccccceEEEEEE-EecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcc------------cceeeeecccc
Q 011732 165 DGIKLEETETWQLRLAYS-TTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQ------------RVRRFAVGRTR 230 (478)
Q Consensus 165 ~g~~~~~~~~~~l~l~~~-~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~------------~L~~~a~~~~~ 230 (478)
.......... ....++|.+++-. +.+|+++. ...|.+|++...... .+.........
T Consensus 217 --------~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (366)
T 3k26_A 217 --------QKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD 287 (366)
T ss_dssp --------EEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred --------eeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence 0000011111 1257889998876 66455554 567999998753210 01111111112
Q ss_pred eeEEEEEEe--CCEEEEeecCCcEEEEEEeccC---ceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEec
Q 011732 231 FMIMLLTAH--FTRIAVGDCRDGILFYSYHEDA---RKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 231 ~~i~sL~~~--~n~IlvgD~~~Sv~ll~y~~~~---~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~ 301 (478)
.....+... +++|++|+.-..|.++..+... ..+..+........++++.+- +...++.+..+|.|.+++.
T Consensus 288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 222233344 7899999988889887765432 133344433346778888875 4447888899999999875
No 55
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.44 E-value=0.044 Score=54.75 Aligned_cols=206 Identities=15% Similarity=0.063 Sum_probs=121.3
Q ss_pred eEEEeC-CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEee
Q 011732 9 VRKFHL-GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGT 86 (478)
Q Consensus 9 ir~i~L-~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT 86 (478)
+++++. +..+..++++|+.+.+++.+.. ...|+++|..+++.+..+.. ...+.++ .+. +..+++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~--~~~~~~~---~~~~~g~~l~~~~ 272 (433)
T 3bws_A 204 KATVDLTGKWSKILLYDPIRDLVYCSNWI------SEDISVIDRKTKLEIRKTDK--IGLPRGL---LLSKDGKELYIAQ 272 (433)
T ss_dssp EEEEECSSSSEEEEEEETTTTEEEEEETT------TTEEEEEETTTTEEEEECCC--CSEEEEE---EECTTSSEEEEEE
T ss_pred EEEEcCCCCCeeEEEEcCCCCEEEEEecC------CCcEEEEECCCCcEEEEecC--CCCceEE---EEcCCCCEEEEEE
Confidence 344543 4478899999999877766531 24799999999988766544 3344443 333 445777776
Q ss_pred ecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCC
Q 011732 87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG 166 (478)
Q Consensus 87 ~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 166 (478)
.... .-....|.|++|++..
T Consensus 273 ~~~~--------~~~~~dg~i~~~d~~~---------------------------------------------------- 292 (433)
T 3bws_A 273 FSAS--------NQESGGGRLGIYSMDK---------------------------------------------------- 292 (433)
T ss_dssp EESC--------TTCSCCEEEEEEETTT----------------------------------------------------
T ss_pred CCCC--------ccccCCCeEEEEECCC----------------------------------------------------
Confidence 5321 1112578999998862
Q ss_pred ccccccccceEEEEEEEecCCceEEEeeeC-CceEEEE--eCCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--CC
Q 011732 167 IKLEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLAS--AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--FT 241 (478)
Q Consensus 167 ~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~a--vg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~n 241 (478)
.+ ++......+.+.+++--. |++|+++ ...+|.+|++.. .+.+.. +.....+.++... +.
T Consensus 293 --------~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~--~~~~~~---~~~~~~~~~~~~s~dg~ 357 (433)
T 3bws_A 293 --------EK--LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE--KKVQKS---IPVFDKPNTIALSPDGK 357 (433)
T ss_dssp --------TE--EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT--TEEEEE---EECSSSEEEEEECTTSS
T ss_pred --------Cc--EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC--CcEEEE---ecCCCCCCeEEEcCCCC
Confidence 01 112223344666666443 4446555 356799999875 222222 2233345555554 67
Q ss_pred EEEEeecCCc-E------------EEEEEeccCceEEEEecCCCCceeEEEEeec-CCeEEEeCC-CCcEEEEecC
Q 011732 242 RIAVGDCRDG-I------------LFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDR-KGSIAVLSCS 302 (478)
Q Consensus 242 ~IlvgD~~~S-v------------~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~-~gNl~vl~~~ 302 (478)
++++++.... + .++.|+....++...-.. ..++.++.+-. ...+++++. ++.+.+++.+
T Consensus 358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 8888876542 1 455577666655544332 34566776643 335566654 8999998864
No 56
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.12 Score=52.38 Aligned_cols=124 Identities=10% Similarity=-0.015 Sum_probs=75.7
Q ss_pred eEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccce-eee-ecccceeEEEEEEe-----CCEEEEe
Q 011732 176 QLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVR-RFA-VGRTRFMIMLLTAH-----FTRIAVG 246 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~-~~a-~~~~~~~i~sL~~~-----~n~Ilvg 246 (478)
.++.+......+.|++|+--. |.+|+++. ...+++|++..... .. ... +......|.++... +.+|+.|
T Consensus 139 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 216 (450)
T 2vdu_B 139 VLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE--EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS 216 (450)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC--SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE
T ss_pred eeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc--ccccceeeecccCceEEEEEcCCCCCCcEEEEE
Confidence 345555566788999988654 55455554 35588888765211 11 111 11122345565544 4489999
Q ss_pred ecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 247 DCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 247 D~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+.-..|.++.++. ++....-......+++++.|-+...++.+..++.|.+++...
T Consensus 217 ~~d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 217 DRDEHIKISHYPQ--CFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp ETTSCEEEEEESC--TTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTT
T ss_pred cCCCcEEEEECCC--CceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCC
Confidence 9888998877643 222222122345677777776555788888999999998753
No 57
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.44 E-value=0.051 Score=51.92 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=131.5
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeC---CCCcEEEEEECCCCCceEEEEEEEECCeeEEEE
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDP---LSGSVLSSFKLELGETGKSMELVRVGHEQVLVV 84 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~---~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~V 84 (478)
.+..++.+..|+.++++|+.+.+++.... .+.|.++|. .+++.+..+ +....+.+++. -.+..++++
T Consensus 76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~--s~dg~~l~~ 145 (343)
T 1ri6_A 76 FAAESALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVV--EGLDGCHSANI--SPDNRTLWV 145 (343)
T ss_dssp EEEEEECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEE--CCCTTBCCCEE--CTTSSEEEE
T ss_pred eccccccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCccccccccc--cCCCCceEEEE--CCCCCEEEE
Confidence 35567777799999999999977766431 246888887 334444443 33344444332 123456666
Q ss_pred eeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCc
Q 011732 85 GTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASC 164 (478)
Q Consensus 85 GT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (478)
+.. ..|+|.+|++.. +
T Consensus 146 ~~~---------------~~~~v~~~d~~~---------------------------------------------~---- 161 (343)
T 1ri6_A 146 PAL---------------KQDRICLFTVSD---------------------------------------------D---- 161 (343)
T ss_dssp EEG---------------GGTEEEEEEECT---------------------------------------------T----
T ss_pred ecC---------------CCCEEEEEEecC---------------------------------------------C----
Confidence 542 257899999862 0
Q ss_pred CCccccccccceEEEEE--EEe--cCCceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCccccee---eeeccc----c
Q 011732 165 DGIKLEETETWQLRLAY--STT--WPGMVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRR---FAVGRT----R 230 (478)
Q Consensus 165 ~g~~~~~~~~~~l~l~~--~~~--~~G~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~---~a~~~~----~ 230 (478)
.++..+. ... ....+.+++--. |++|+++. +.++.+|++.....+ ++. ...... .
T Consensus 162 ----------~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 162 ----------GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN-IECVQTLDMMPENFSDT 230 (343)
T ss_dssp ----------SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC-CEEEEEEECSCTTCCSC
T ss_pred ----------CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-EEEEeeccccCcccccc
Confidence 1222222 122 233566555433 55565554 567999999642222 221 111111 1
Q ss_pred eeEEEEEEe--CCEEEEeecC-CcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeC-CCCcEEEEecCCCc
Q 011732 231 FMIMLLTAH--FTRIAVGDCR-DGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSD-RKGSIAVLSCSDRL 305 (478)
Q Consensus 231 ~~i~sL~~~--~n~IlvgD~~-~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD-~~gNl~vl~~~~~~ 305 (478)
..+..+... +.++++++.. ..+.++..+...+++..+..-.....+.++.+- |...+++++ .++.+.+++++..
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~- 309 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE- 309 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT-
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCC-
Confidence 233344443 6788887754 457777665434455554433222335555554 334566666 5788998877541
Q ss_pred ccCCCCCccceeeeeeecCccccEEEe
Q 011732 306 EDNASPECNLTPNCAYHMGEIAVSIRK 332 (478)
Q Consensus 306 ~~s~~~~~~L~~~~~fhlGd~vt~~~~ 332 (478)
. .++.....+..|..+..+..
T Consensus 310 ----~--g~~~~~~~~~~g~~p~~i~~ 330 (343)
T 1ri6_A 310 ----Q--GLLHEKGRYAVGQGPMWVVV 330 (343)
T ss_dssp ----T--TEEEEEEEEECSSSCCEEEE
T ss_pred ----C--ceeeEccccccCCCCeeEEE
Confidence 1 25777888888888887764
No 58
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.43 E-value=0.03 Score=55.50 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=127.2
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEE--EECCC-CCceEEEEEEEECCeeEEEEeeecCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSS--FKLEL-GETGKSMELVRVGHEQVLVVGTSLSSGPA 93 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~--~~l~~-~E~~~s~~~~~l~~~~~l~VGT~~~~g~~ 93 (478)
....++|+|+.+++ +++. ...|+++|..+.+.+.. +.+.. ...+.|++. ..+..+|+.|..
T Consensus 96 ~V~~~~~s~d~~~l-~~s~-------dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~--spdg~~l~sgs~------ 159 (357)
T 4g56_B 96 GVTDVAWVSEKGIL-VASD-------SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV--FSDGTQAVSGGK------ 159 (357)
T ss_dssp CEEEEEEETTTEEE-EEET-------TSCEEEC--------CCCCEEECCCSSCEEEEEE--CSSSSEEEEEET------
T ss_pred CEEEEEEcCCCCEE-EEEC-------CCEEEEeeccccceeEEEeeccCCCCCCEEEEEE--CCCCCEEEEEeC------
Confidence 46678899986544 3322 24699999887765433 22222 234555433 134577777743
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
.|.|.+|++..
T Consensus 160 ----------dg~v~iwd~~~----------------------------------------------------------- 170 (357)
T 4g56_B 160 ----------DFSVKVWDLSQ----------------------------------------------------------- 170 (357)
T ss_dssp ----------TSCEEEEETTT-----------------------------------------------------------
T ss_pred ----------CCeEEEEECCC-----------------------------------------------------------
Confidence 46788988752
Q ss_pred cceEEEEEE-EecCCceEEEeeeC-C-ceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe---CCEEEEe
Q 011732 174 TWQLRLAYS-TTWPGMVLAICPYL-D-RYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH---FTRIAVG 246 (478)
Q Consensus 174 ~~~l~l~~~-~~~~G~V~ai~~~~-g-~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~---~n~Ilvg 246 (478)
.+ .+.. ....++|++|+-.. + .+++.+. ..+|++|++... +.+....+......++++... +.++++|
T Consensus 171 -~~--~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~--~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g 245 (357)
T 4g56_B 171 -KA--VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP--KPATRIDFCASDTIPTSVTWHPEKDDTFACG 245 (357)
T ss_dssp -TE--EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS--SCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred -Cc--EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC--ceeeeeeeccccccccchhhhhcccceEEEe
Confidence 01 1122 23568899887543 2 3244333 567999998762 223322333334456777654 4678889
Q ss_pred ecCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCC-eEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecC
Q 011732 247 DCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVD-TAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMG 324 (478)
Q Consensus 247 D~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~-~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlG 324 (478)
+.-..|.++..+... .+..+ ......++++.|- +.. .++.+..+|.|.+++... ++ .+...+ | .
T Consensus 246 ~~d~~i~~wd~~~~~-~~~~~--~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-------~~-~~~~~~--H-~ 311 (357)
T 4g56_B 246 DETGNVSLVNIKNPD-SAQTS--AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-------SE-VFRDLS--H-R 311 (357)
T ss_dssp ESSSCEEEEESSCGG-GCEEE--CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-------CE-EEEECC--C-S
T ss_pred ecccceeEEECCCCc-EeEEE--eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-------Cc-EeEECC--C-C
Confidence 888888887543322 22222 2334567777774 443 455678899999997643 11 222222 2 3
Q ss_pred ccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEE
Q 011732 325 EIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFI 372 (478)
Q Consensus 325 d~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~ 372 (478)
+.|+++. +. | .+...++.++.+|.|-+.-
T Consensus 312 ~~V~~va---fs---P-------------~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 312 DFVTGVA---WS---P-------------LDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp SCEEEEE---EC---S-------------SSTTEEEEEETTSCEEEEE
T ss_pred CCEEEEE---Ee---C-------------CCCCEEEEEcCCCeEEEEE
Confidence 4556553 21 2 1235677788999987664
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.42 E-value=0.13 Score=51.81 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=75.0
Q ss_pred ecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCc
Q 011732 184 TWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR 262 (478)
Q Consensus 184 ~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~ 262 (478)
...++|.++..-.+. |+++. ...|.+|++... +.+... ......+.++...++++++|..-..+.++. ....
T Consensus 197 ~h~~~v~~~~~~~~~-l~s~s~dg~i~~wd~~~~--~~~~~~--~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd--~~~~ 269 (445)
T 2ovr_B 197 GHTSTVRCMHLHEKR-VVSGSRDATLRVWDIETG--QCLHVL--MGHVAAVRCVQYDGRRVVSGAYDFMVKVWD--PETE 269 (445)
T ss_dssp CCSSCEEEEEEETTE-EEEEETTSEEEEEESSSC--CEEEEE--ECCSSCEEEEEECSSCEEEEETTSCEEEEE--GGGT
T ss_pred CCCCcEEEEEecCCE-EEEEeCCCEEEEEECCCC--cEEEEE--cCCcccEEEEEECCCEEEEEcCCCEEEEEE--CCCC
Confidence 356789988875444 66554 667999999862 223222 223345777777899999999988888865 3333
Q ss_pred eEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 263 KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 263 ~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+....- ......++++.+ +...++.+..+|.+.+++...
T Consensus 270 ~~~~~~-~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~ 308 (445)
T 2ovr_B 270 TCLHTL-QGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVET 308 (445)
T ss_dssp EEEEEE-CCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTT
T ss_pred cEeEEe-cCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCC
Confidence 333222 234456777777 777899999999999998753
No 60
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.40 E-value=0.051 Score=53.83 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=110.8
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECC--C-CCceEEEEEEEECCeeEEEEeeecCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE--L-GETGKSMELVRVGHEQVLVVGTSLSSGPA 93 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~--~-~E~~~s~~~~~l~~~~~l~VGT~~~~g~~ 93 (478)
....++|+|+. .+++++. -..|+++|..+++.+....+. . ...+.|++.- .+..+|+.|..
T Consensus 84 ~v~~~~~s~d~-~l~~~s~-------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s--pdg~~l~sgs~------ 147 (344)
T 4gqb_B 84 GVADLTWVGER-GILVASD-------SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL--SSGTQAVSGSK------ 147 (344)
T ss_dssp CEEEEEEETTT-EEEEEET-------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC--TTSSEEEEEET------
T ss_pred CEEEEEEeCCC-eEEEEEC-------CCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC--CCCCEEEEEeC------
Confidence 45678888874 3333321 357999999888765544332 2 3345554431 34578887754
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
.|.|.+|++..
T Consensus 148 ----------d~~i~iwd~~~----------------------------------------------------------- 158 (344)
T 4gqb_B 148 ----------DICIKVWDLAQ----------------------------------------------------------- 158 (344)
T ss_dssp ----------TSCEEEEETTT-----------------------------------------------------------
T ss_pred ----------CCeEEEEECCC-----------------------------------------------------------
Confidence 46788998862
Q ss_pred cceEEEEEE-EecCCceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe---CCEEEEe
Q 011732 174 TWQLRLAYS-TTWPGMVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH---FTRIAVG 246 (478)
Q Consensus 174 ~~~l~l~~~-~~~~G~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~---~n~Ilvg 246 (478)
.+ .+.. ....++|++++-.. +..++++. ..+|++|++... +.+...........++++... +++++.|
T Consensus 159 -~~--~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 159 -QV--VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP--KPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp -TE--EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS--SCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred -Cc--EEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc--ceeeeeecceeeccceeeeecCCCCcceEEe
Confidence 01 1222 23578999988544 32244433 467999999762 223322222223346666653 3567778
Q ss_pred ecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeec-CC-eEEEeCCCCcEEEEecC
Q 011732 247 DCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VD-TAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 247 D~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~-~~l~aD~~gNl~vl~~~ 302 (478)
..-..|.++..+.... +..+ ..+...|+++.|-. .. .++.+..+|.|.+++..
T Consensus 234 ~~dg~v~~wd~~~~~~-~~~~--~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSC-VLSS--AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp ETTSEEEEEESCC--C-CEEE--ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred ccCCcEEEEECCCCcE-EEEE--cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 8777787765432211 1222 13455788888753 33 45667889999999754
No 61
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=97.38 E-value=0.011 Score=56.59 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=58.4
Q ss_pred eeEEEeCCC---CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCC----ceEEEEEEEEC-Ce
Q 011732 8 NVRKFHLGG---TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGE----TGKSMELVRVG-HE 79 (478)
Q Consensus 8 ~ir~i~L~~---tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E----~~~s~~~~~l~-~~ 79 (478)
.+++++++. .|+.++++|+.+.+++.... ...|.++|..+++.+..+.+.... .+.++ .+. +.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~dg 93 (337)
T 1pby_B 23 VDKVITIADAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGA---ALSPDG 93 (337)
T ss_dssp EEEEEECTTCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCE---EECTTS
T ss_pred EEEEEEcCCCCCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEcCCcccccccccce---EECCCC
Confidence 467788888 79999999999877666531 357999999999998888775411 23222 333 33
Q ss_pred eEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 80 QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 80 ~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
.+++++..... .. +++.....|+|++|++.
T Consensus 94 ~~l~~~~~~~~---~~-~~~~~~~~~~i~v~d~~ 123 (337)
T 1pby_B 94 KTLAIYESPVR---LE-LTHFEVQPTRVALYDAE 123 (337)
T ss_dssp SEEEEEEEEEE---EC-SSCEEECCCEEEEEETT
T ss_pred CEEEEEecccc---cc-cccccccCceEEEEECC
Confidence 56666643110 00 01111135889998875
No 62
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.37 E-value=0.13 Score=50.61 Aligned_cols=113 Identities=11% Similarity=-0.005 Sum_probs=70.3
Q ss_pred cCCceEEEeee---CCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEe
Q 011732 185 WPGMVLAICPY---LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 185 ~~G~V~ai~~~---~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~ 258 (478)
..++|.++.-. .|.+|+.+. ..+|++|++... +.+.. +......|.++.. .+++++.|..-..+.++..+
T Consensus 195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~--~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG--QCVQA--FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC--CEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--cEEEE--ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 46778877643 245455554 567999999762 22222 2222334666655 47899999888888886543
Q ss_pred ccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 259 EDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 259 ~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
. ...+...........++++.|- +...++++..+|.+.+++..
T Consensus 271 ~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 271 A-DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL 314 (354)
T ss_dssp T-TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred C-CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence 2 2233344444444566777764 44577788899999999864
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.099 Score=49.09 Aligned_cols=110 Identities=8% Similarity=0.059 Sum_probs=71.4
Q ss_pred ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCc-ccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEecc
Q 011732 184 TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNP-QRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHED 260 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~-~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~ 260 (478)
...++|.+++-.. +.+|+++. ...+.+|++..... +.+.. +......+.++...++++++|..-..+.++. .
T Consensus 57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~ 131 (313)
T 3odt_A 57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYT--LIGHQGNVCSLSFQDGVVISGSWDKTAKVWK---E 131 (313)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CE--ECCCSSCEEEEEEETTEEEEEETTSEEEEEE---T
T ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccc--hhhcccCEEEEEecCCEEEEEeCCCCEEEEc---C
Confidence 4588999998665 45455554 45689998875322 11221 2233446778888899999999988888865 2
Q ss_pred CceEEEEecCCCCceeEEEEee--cCCeEEEeCCCCcEEEEe
Q 011732 261 ARKLEQIYCDPSQRLVADCVLM--DVDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 261 ~~~L~~varD~~~~~vta~~~l--d~~~~l~aD~~gNl~vl~ 300 (478)
...+..+. .....+.++.+. +.+.++.+..+|.+.+++
T Consensus 132 ~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 132 GSLVYNLQ--AHNASVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp TEEEEEEE--CCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CcEEEecc--cCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 22222222 234456666654 466889999999999997
No 64
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.36 E-value=0.0061 Score=60.64 Aligned_cols=203 Identities=12% Similarity=0.117 Sum_probs=109.0
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEE---ECCCCCceEEEEEEEECCeeEEEEeeecCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSF---KLELGETGKSMELVRVGHEQVLVVGTSLSSGPA 93 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~---~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~ 93 (478)
..+.++|+|+.+.++.+..+. ...|-..+++++..+++....+ ...-...+.|++.. .+.. +++|..
T Consensus 44 ~V~~v~fSpDG~~las~s~d~-~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s--~d~~-~l~~s~------ 113 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLS-SRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV--SEKG-ILVASD------ 113 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSS-SSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEE--TTTE-EEEEET------
T ss_pred CEEEEEECCCCCEEEEEcCCC-CccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEc--CCCC-EEEEEC------
Confidence 567899999999887765432 2335678999998776533221 11122335554432 2334 444432
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
.|.|.+|++...+ +
T Consensus 114 ----------dg~v~lWd~~~~~------------------------------------------~-------------- 127 (357)
T 4g56_B 114 ----------SGAVELWEILEKE------------------------------------------S-------------- 127 (357)
T ss_dssp ----------TSCEEEC---------------------------------------------------------------
T ss_pred ----------CCEEEEeeccccc------------------------------------------e--------------
Confidence 4679999987310 0
Q ss_pred cceEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--C-CEEEEeec
Q 011732 174 TWQLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--F-TRIAVGDC 248 (478)
Q Consensus 174 ~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~-n~IlvgD~ 248 (478)
............++|++|+-.. |++|+.+. ...|.+|++.. .+.+.. +......|.++... + .+++.|..
T Consensus 128 -~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--~~~~~~--~~~h~~~v~~v~~s~~~~~~~~s~~~ 202 (357)
T 4g56_B 128 -LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--KAVLKS--YNAHSSEVNCVAACPGKDTIFLSCGE 202 (357)
T ss_dssp --CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--TEEEEE--ECCCSSCEEEEEECTTCSSCEEEEET
T ss_pred -eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEEEE--EcCCCCCEEEEEEccCCCceeeeecc
Confidence 0000112234678999998665 56455554 55699999875 222222 11223356666654 3 35566666
Q ss_pred CCcEEEEEEeccCceEE-EEecCCCCceeEEEEeec-CC-eEEEeCCCCcEEEEecC
Q 011732 249 RDGILFYSYHEDARKLE-QIYCDPSQRLVADCVLMD-VD-TAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 249 ~~Sv~ll~y~~~~~~L~-~varD~~~~~vta~~~ld-~~-~~l~aD~~gNl~vl~~~ 302 (478)
-..|.++ +....+.. .+........++++.+-. .+ .+++++.++.|.+++..
T Consensus 203 dg~v~~w--d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 203 DGRILLW--DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp TSCEEEC--CTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred CCceEEE--ECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence 6667664 43332221 222223345577777753 33 56678999999999864
No 65
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.041 Score=56.00 Aligned_cols=204 Identities=10% Similarity=0.102 Sum_probs=117.3
Q ss_pred eCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEE--EEECC-CCCceEEEEEEEEC--CeeEEEEeee
Q 011732 13 HLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLS--SFKLE-LGETGKSMELVRVG--HEQVLVVGTS 87 (478)
Q Consensus 13 ~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~--~~~l~-~~E~~~s~~~~~l~--~~~~l~VGT~ 87 (478)
.....+..++++|+.+.++++.. ...+.+++..+.+... ...+. ....+.|+..- -+ +..+|+.|..
T Consensus 147 ~~~~~v~~~~~sp~~~~l~~~~~-------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~ 218 (450)
T 2vdu_B 147 CFSKRPNAISIAEDDTTVIIADK-------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDR 218 (450)
T ss_dssp ECSSCEEEEEECTTSSEEEEEET-------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEET
T ss_pred cCCCCceEEEEcCCCCEEEEEeC-------CCcEEEEecCCcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcC
Confidence 45567788999998888777642 3467888876655332 01111 12456665433 22 1567777743
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCc
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI 167 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (478)
-|.|.+|++...
T Consensus 219 ----------------d~~i~vwd~~~~---------------------------------------------------- 230 (450)
T 2vdu_B 219 ----------------DEHIKISHYPQC---------------------------------------------------- 230 (450)
T ss_dssp ----------------TSCEEEEEESCT----------------------------------------------------
T ss_pred ----------------CCcEEEEECCCC----------------------------------------------------
Confidence 378999998620
Q ss_pred cccccccceEEEEEEEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeec-------------------
Q 011732 168 KLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVG------------------- 227 (478)
Q Consensus 168 ~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~------------------- 227 (478)
..+.. ......++|++++-..|++|+.+. ..+|++|++... +.+......
T Consensus 231 -------~~~~~-~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (450)
T 2vdu_B 231 -------FIVDK-WLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTG--KNLSTFDYNSLIKPYLNDQHLAPPRFQN 300 (450)
T ss_dssp -------TCEEE-ECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTC--CEEEEEECHHHHGGGCCTTSBC------
T ss_pred -------ceeee-eecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCC--cEeeeecchhhhhhhhhhcccccccccc
Confidence 01111 112356888888754677555554 457999999762 222222110
Q ss_pred ----ccceeEEEEEEe--CCEEEEee-cCCcEEEEEE-eccCceEEEEecCCCCceeEEEEeecCCeEEEeCC-------
Q 011732 228 ----RTRFMIMLLTAH--FTRIAVGD-CRDGILFYSY-HEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR------- 292 (478)
Q Consensus 228 ----~~~~~i~sL~~~--~n~IlvgD-~~~Sv~ll~y-~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~------- 292 (478)
.....+.+|... +++|+++. .-..|.++.. +...+++..+..=.....+.++.+..+..+++.|.
T Consensus 301 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~ 380 (450)
T 2vdu_B 301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQ 380 (450)
T ss_dssp ----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSC
T ss_pred cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCC
Confidence 112345666554 67888887 6778888887 33444444443332335677777766556666655
Q ss_pred CCcEEEEecC
Q 011732 293 KGSIAVLSCS 302 (478)
Q Consensus 293 ~gNl~vl~~~ 302 (478)
+..|.+|.++
T Consensus 381 ~~~i~v~~~~ 390 (450)
T 2vdu_B 381 KNFAKFIEYN 390 (450)
T ss_dssp CCSEEEEEEE
T ss_pred CcceEEEEEE
Confidence 3345666654
No 66
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.27 E-value=0.097 Score=60.29 Aligned_cols=150 Identities=5% Similarity=0.005 Sum_probs=90.9
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
....++|+|+.+.++.+.. .+.|+++|..+++.+..+.- ....+.|++.- .+..+++.|+.
T Consensus 617 ~v~~~~~s~~~~~l~s~~~-------d~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s--~~~~~l~s~~~--------- 677 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGA-------DKTLQVFKAETGEKLLDIKA-HEDEVLCCAFS--SDDSYIATCSA--------- 677 (1249)
T ss_dssp CEEEEEECTTSSEEEEEET-------TSCEEEEETTTCCEEEEECC-CSSCEEEEEEC--TTSSEEEEEET---------
T ss_pred cEEEEEECCCCCEEEEEeC-------CCeEEEEECCCCCEEEEecc-CCCCEEEEEEe--cCCCEEEEEeC---------
Confidence 5677899999888876642 24799999999998877652 23344444331 24578888753
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
.|.|.+|++.. | ..
T Consensus 678 -------d~~v~vwd~~~---------------------------------------------------~--------~~ 691 (1249)
T 3sfz_A 678 -------DKKVKIWDSAT---------------------------------------------------G--------KL 691 (1249)
T ss_dssp -------TSEEEEEETTT---------------------------------------------------C--------CE
T ss_pred -------CCeEEEEECCC---------------------------------------------------C--------ce
Confidence 47899998862 0 01
Q ss_pred EEEEEEEecCCceEEEeeeC--CceEEEE-e-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCC
Q 011732 177 LRLAYSTTWPGMVLAICPYL--DRYFLAS-A-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRD 250 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~--g~~Ll~a-v-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~ 250 (478)
+..+ ....++|.+++-.. +..++++ . ...|.+|++... +.+.... .....|.++.. .++++++|..-.
T Consensus 692 ~~~~--~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~dg 765 (1249)
T 3sfz_A 692 VHTY--DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--ECRNTMF--GHTNSVNHCRFSPDDELLASCSADG 765 (1249)
T ss_dssp EEEE--ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS--SEEEEEC--CCSSCEEEEEECSSTTEEEEEESSS
T ss_pred EEEE--cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc--chhheec--CCCCCEEEEEEecCCCEEEEEECCC
Confidence 1111 24678898888654 3223333 3 456999999762 2122211 22223444443 467788887777
Q ss_pred cEEEEEE
Q 011732 251 GILFYSY 257 (478)
Q Consensus 251 Sv~ll~y 257 (478)
.|.++..
T Consensus 766 ~v~vwd~ 772 (1249)
T 3sfz_A 766 TLRLWDV 772 (1249)
T ss_dssp EEEEEEG
T ss_pred eEEEEeC
Confidence 7776543
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.26 E-value=0.24 Score=53.88 Aligned_cols=204 Identities=11% Similarity=0.129 Sum_probs=124.1
Q ss_pred eEEEeC-CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeee
Q 011732 9 VRKFHL-GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTS 87 (478)
Q Consensus 9 ir~i~L-~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~ 87 (478)
++++.. ....+.++++|+.+.+++++. .+.|+++|..+++.+..+.-.. ..+.|++.- .+.++|++|+.
T Consensus 48 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~-~~v~~~~~s--~~~~~l~~~~~ 117 (814)
T 3mkq_A 48 VRSIQVTETPVRAGKFIARKNWIIVGSD-------DFRIRVFNYNTGEKVVDFEAHP-DYIRSIAVH--PTKPYVLSGSD 117 (814)
T ss_dssp EEEEECCSSCEEEEEEEGGGTEEEEEET-------TSEEEEEETTTCCEEEEEECCS-SCEEEEEEC--SSSSEEEEEET
T ss_pred EEEEecCCCcEEEEEEeCCCCEEEEEeC-------CCeEEEEECCCCcEEEEEecCC-CCEEEEEEe--CCCCEEEEEcC
Confidence 344543 336788999999988887753 3589999999998887765332 345544321 24467877643
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCc
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI 167 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (478)
.|.|.+|++...
T Consensus 118 ----------------dg~i~vw~~~~~---------------------------------------------------- 129 (814)
T 3mkq_A 118 ----------------DLTVKLWNWENN---------------------------------------------------- 129 (814)
T ss_dssp ----------------TSEEEEEEGGGT----------------------------------------------------
T ss_pred ----------------CCEEEEEECCCC----------------------------------------------------
Confidence 578999988620
Q ss_pred cccccccceEEEEEEEecCCceEEEeeeC--CceEEEEe-CCeEEEEeeCCCCcccceeeeec-ccceeEEEEEE--eCC
Q 011732 168 KLEETETWQLRLAYSTTWPGMVLAICPYL--DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVG-RTRFMIMLLTA--HFT 241 (478)
Q Consensus 168 ~~~~~~~~~l~l~~~~~~~G~V~ai~~~~--g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~-~~~~~i~sL~~--~~n 241 (478)
..+.. .-....++|.+++-.. +.+|+++. ...|.+|++..... ....... ..+........ .++
T Consensus 130 -------~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~ 199 (814)
T 3mkq_A 130 -------WALEQ-TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKP 199 (814)
T ss_dssp -------SEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCC
T ss_pred -------ceEEE-EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--eeEEecCCCCCEEEEEEEECCCCC
Confidence 11111 1134678899988765 44355444 56799999875321 2221111 12333333333 577
Q ss_pred EEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEecCC
Q 011732 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 242 ~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~~ 303 (478)
++++|..-..+.++.. ..++....-+ .....++++.+-. ...++.+..+|.+.+++...
T Consensus 200 ~l~~~~~dg~i~~~d~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 200 YMITASDDLTIKIWDY--QTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EEEEECTTSEEEEEET--TTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEeCCCEEEEEEC--CCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 8999988887777543 3443333222 2344577777653 34788888899999998653
No 68
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=97.24 E-value=0.21 Score=50.21 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=105.2
Q ss_pred eEEEEEeCCCCcEEEEEECCC-CCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCC
Q 011732 44 SDICCVDPLSGSVLSSFKLEL-GETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGS 122 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~-~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~ 122 (478)
.+|+|+|..|++++..+++.. +..|+|++.- .+..+|++|+. -|.|.+|++...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs--pdg~~lasgs~----------------Dg~v~iWd~~~~------- 179 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWI--KEGNYLAVGTS----------------SAEVQLWDVQQQ------- 179 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEEC--TTSSEEEEEET----------------TSCEEEEETTTT-------
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEEC--CCCCEEEEEEC----------------CCeEEEEEcCCC-------
Confidence 489999999999998888875 4567776542 34589999865 478899988620
Q ss_pred ccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeCCceEEE
Q 011732 123 MTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLA 202 (478)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~ 202 (478)
..+. .-....+.|.++.. ++.+|+.
T Consensus 180 ----------------------------------------------------~~~~--~~~~h~~~v~~~s~-~~~~l~s 204 (420)
T 4gga_A 180 ----------------------------------------------------KRLR--NMTSHSARVGSLSW-NSYILSS 204 (420)
T ss_dssp ----------------------------------------------------EEEE--EECCCSSCEEEEEE-ETTEEEE
T ss_pred ----------------------------------------------------cEEE--EEeCCCCceEEEee-CCCEEEE
Confidence 1111 11235677888765 4663544
Q ss_pred Ee-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEE-EEecCCCCceeEEEE
Q 011732 203 SA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLE-QIYCDPSQRLVADCV 280 (478)
Q Consensus 203 av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~-~varD~~~~~vta~~ 280 (478)
+. ...+.+|++..... .+..................+++++.|..-..+.++.......... ..........|.++.
T Consensus 205 gs~d~~i~~~d~~~~~~-~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~ 283 (420)
T 4gga_A 205 GSRSGHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283 (420)
T ss_dssp EETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEE
T ss_pred EeCCCceeEeeecccce-eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeee
Confidence 44 44578887765221 1222222222333333344578888888888887765543222111 112233445567777
Q ss_pred eecC-CeEE---EeCCCCcEEEEecC
Q 011732 281 LMDV-DTAV---VSDRKGSIAVLSCS 302 (478)
Q Consensus 281 ~ld~-~~~l---~aD~~gNl~vl~~~ 302 (478)
+... ..++ ++..++.|.++...
T Consensus 284 ~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 284 WCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp ECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred eCCCcccEEEEEeecCCCEEEEEeCC
Confidence 6533 2332 34678999998864
No 69
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.24 E-value=0.25 Score=51.19 Aligned_cols=187 Identities=7% Similarity=0.067 Sum_probs=113.7
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~~~ 95 (478)
.+..++++|+.+.++.+.. ...++++|. +++.+..+.-. ...+.+++ +. +..+|+.|..
T Consensus 346 ~v~~~~~s~~g~~l~~~~~-------dg~v~~~~~-~~~~~~~~~~~-~~~v~~~~---~s~dg~~l~~~~~-------- 405 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASD-------DKTVKLWNR-NGQLLQTLTGH-SSSVRGVA---FSPDGQTIASASD-------- 405 (577)
T ss_dssp CEEEEEECTTSSEEEEEET-------TSEEEEEET-TCCEEEEEECC-SSCEEEEE---ECTTSSCEEEEET--------
T ss_pred CEEEEEECCCCCEEEEEeC-------CCEEEEEcC-CCCEEEEecCC-CCCeEEEE---ECCCCCEEEEEeC--------
Confidence 5677899999888776642 247899995 46666655432 33455543 33 4467777643
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
.|.|.+|+... .
T Consensus 406 --------d~~v~~~~~~~------------------------------------------------------------~ 417 (577)
T 2ymu_A 406 --------DKTVKLWNRNG------------------------------------------------------------Q 417 (577)
T ss_dssp --------TSEEEEECTTC------------------------------------------------------------C
T ss_pred --------CCEEEEEeCCC------------------------------------------------------------C
Confidence 36777876420 0
Q ss_pred eEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCc
Q 011732 176 QLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDG 251 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~S 251 (478)
.++. -....++|++++--. +++|+.+. ...|.+|+... +.+...... ...+.++.. .+.+|+.|..-..
T Consensus 418 ~~~~--~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---~~~~~~~~~--~~~v~~~~~spd~~~las~~~d~~ 490 (577)
T 2ymu_A 418 LLQT--LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---QLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKT 490 (577)
T ss_dssp EEEE--EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS---CEEEEEECC--SSCEEEEEECTTSCEEEEEETTSE
T ss_pred EEEE--ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC---CEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCE
Confidence 1111 134578888887554 56455554 55699998653 334332222 234555544 4678888887777
Q ss_pred EEEEEEeccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEecC
Q 011732 252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 252 v~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~ 302 (478)
|.++ +.....+..+. .+...++++.|-. ...++.++.+|.|.+++++
T Consensus 491 i~iw--~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 491 VKLW--NRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEE--ETTSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEE--cCCCCEEEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 7775 44444344332 2345678888754 4477788999999999753
No 70
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=97.23 E-value=0.062 Score=52.69 Aligned_cols=195 Identities=8% Similarity=-0.014 Sum_probs=119.0
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCC--CCceEEEEEEEEC-CeeEEEEeeecCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLEL--GETGKSMELVRVG-HEQVLVVGTSLSSGPA 93 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~--~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~ 93 (478)
....++|+|+.+.++.+..+ ..|+++|..+.+.+....+.. ...+.|+ .+. +..+|+.|..
T Consensus 18 ~v~~l~~sp~g~~las~~~D-------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~---~~sp~g~~l~s~s~------ 81 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGD-------RRIRIWGTEGDSWICKSVLSEGHQRTVRKV---AWSPCGNYLASASF------ 81 (345)
T ss_dssp CEEEEEECTTSSCEEEEETT-------SCEEEEEEETTEEEEEEEECSSCSSCEEEE---EECTTSSEEEEEET------
T ss_pred cEEEEEECCCCCEEEEEcCC-------CeEEEEEcCCCcceeeeeeccccCCcEEEE---EECCCCCEEEEEEC------
Confidence 45689999999988776532 469999987776544433332 2334443 333 4578887754
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
-|.+.+|++..
T Consensus 82 ----------D~~v~iw~~~~----------------------------------------------------------- 92 (345)
T 3fm0_A 82 ----------DATTCIWKKNQ----------------------------------------------------------- 92 (345)
T ss_dssp ----------TSCEEEEEECC-----------------------------------------------------------
T ss_pred ----------CCcEEEEEccC-----------------------------------------------------------
Confidence 35678888762
Q ss_pred cceEEEEEEE-ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecc-cceeEEEEEE--eCCEEEEee
Q 011732 174 TWQLRLAYST-TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGR-TRFMIMLLTA--HFTRIAVGD 247 (478)
Q Consensus 174 ~~~l~l~~~~-~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~-~~~~i~sL~~--~~n~IlvgD 247 (478)
..++.+... ...++|++|+-.. |.+|+.+. ...|.+|++..... ...+..+. ....|.++.. .+++|+.|.
T Consensus 93 -~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s 169 (345)
T 3fm0_A 93 -DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE--YECVSVLNSHTQDVKHVVWHPSQELLASAS 169 (345)
T ss_dssp -C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC--EEEEEEECCCCSCEEEEEECSSSSCEEEEE
T ss_pred -CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC--eEEEEEecCcCCCeEEEEECCCCCEEEEEe
Confidence 122223322 3568999988654 56455544 45699999976322 22122111 1223555544 468899999
Q ss_pred cCCcEEEEEEeccCceEEEE-ecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEec
Q 011732 248 CRDGILFYSYHEDARKLEQI-YCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 248 ~~~Sv~ll~y~~~~~~L~~v-arD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~ 301 (478)
.-..+.++.... .....+ .-..+...|+++.|-. ...++.+..+|.+.+++.
T Consensus 170 ~d~~i~~w~~~~--~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 170 YDDTVKLYREEE--DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp TTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCcEEEEEecC--CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 888898876543 322221 1233456788888753 447788899999999975
No 71
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0093 Score=60.10 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=54.6
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEE-EEC-CeeEEEEeeecCCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELV-RVG-HEQVLVVGTSLSSGPA 93 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~-~l~-~~~~l~VGT~~~~g~~ 93 (478)
..+..++++|+.+.+++++. -..|+++|..+++.+..+.+.....+.+++.. .+. +..+|+.|+.
T Consensus 215 ~~v~~~~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~------ 281 (437)
T 3gre_A 215 GAVSSICIDEECCVLILGTT-------RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS------ 281 (437)
T ss_dssp CCEEEEEECTTSCEEEEEET-------TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST------
T ss_pred CceEEEEECCCCCEEEEEcC-------CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC------
Confidence 47788999998877776653 25799999999999988887766666666443 222 3467777743
Q ss_pred CCCCCCCcCcceEEEEEEEE
Q 011732 94 IMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~ 113 (478)
.|.|.+|++.
T Consensus 282 ----------dg~i~iwd~~ 291 (437)
T 3gre_A 282 ----------KTFLTIWNFV 291 (437)
T ss_dssp ----------TEEEEEEETT
T ss_pred ----------CCcEEEEEcC
Confidence 5788999886
No 72
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.23 E-value=0.1 Score=51.22 Aligned_cols=199 Identities=11% Similarity=0.067 Sum_probs=116.9
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEee
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGT 86 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT 86 (478)
.++.++.+..++.++++|+.+.+++++.. ...|+++|..+++.+..+... ..+.+++ +. +..++++..
T Consensus 66 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~~--~~~~~~~---~s~dg~~l~~~~ 134 (391)
T 1l0q_A 66 VIATVPAGSSPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTG--KSPLGLA---LSPDGKKLYVTN 134 (391)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECS--SSEEEEE---ECTTSSEEEEEE
T ss_pred EEEEEECCCCccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeCC--CCcceEE---ECCCCCEEEEEe
Confidence 35678888899999999999977776532 257999999999988776643 3454433 33 334453332
Q ss_pred ecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCC
Q 011732 87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG 166 (478)
Q Consensus 87 ~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 166 (478)
. ..|.|++|++..
T Consensus 135 ~---------------~~~~v~~~d~~~---------------------------------------------------- 147 (391)
T 1l0q_A 135 N---------------GDKTVSVINTVT---------------------------------------------------- 147 (391)
T ss_dssp T---------------TTTEEEEEETTT----------------------------------------------------
T ss_pred C---------------CCCEEEEEECCC----------------------------------------------------
Confidence 2 156888888751
Q ss_pred ccccccccceEEEEEEEecCCceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCC
Q 011732 167 IKLEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFT 241 (478)
Q Consensus 167 ~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n 241 (478)
.+ .+........+.+++--. |++|+++. +..|++|++... +.+.. ......+.++.. .++
T Consensus 148 --------~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~---~~~~~~~~~~~~~~~g~ 212 (391)
T 1l0q_A 148 --------KA--VINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN--SVIDT---VKVEAAPSGIAVNPEGT 212 (391)
T ss_dssp --------TE--EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEE---EECSSEEEEEEECTTSS
T ss_pred --------Cc--EEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC--eEEEE---EecCCCccceEECCCCC
Confidence 01 122234455667666443 55465553 456999998752 21222 222334555544 467
Q ss_pred EEEEeec---CCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCC-eE-EEeCCCCcEEEEecCC
Q 011732 242 RIAVGDC---RDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TA-VVSDRKGSIAVLSCSD 303 (478)
Q Consensus 242 ~IlvgD~---~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~-~~-l~aD~~gNl~vl~~~~ 303 (478)
++++++. -..+.+ |+....+....-.. ...+.++.+-.++ .+ +++..++.+.+++...
T Consensus 213 ~l~~~~~~~~~~~v~~--~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 213 KAYVTNVDKYFNTVSM--IDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEEEEEECSSCCEEEE--EETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEecCcCCCcEEE--EECCCCeEEEEEec--CCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 8998874 445554 55554443322211 2235556654333 44 4557788999988653
No 73
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=97.20 E-value=0.14 Score=48.80 Aligned_cols=117 Identities=9% Similarity=0.084 Sum_probs=71.8
Q ss_pred cCCceEEEeeeC---CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe---------------CCEEEE
Q 011732 185 WPGMVLAICPYL---DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH---------------FTRIAV 245 (478)
Q Consensus 185 ~~G~V~ai~~~~---g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~---------------~n~Ilv 245 (478)
..++|.+++-.. |.+|+++. ..+|.+|++..... .....+......+.++... +.+|+.
T Consensus 98 h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~s 175 (297)
T 2pm7_B 98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175 (297)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC--BCCEEEECCSSCEEEEEECCCC------------CCEEEE
T ss_pred CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc--eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEE
Confidence 467888888654 55455554 66799999976321 1111111122234444433 358889
Q ss_pred eecCCcEEEEEEeccCceEEEEe-cCCCCceeEEEEeecC----CeEEEeCCCCcEEEEecCC
Q 011732 246 GDCRDGILFYSYHEDARKLEQIY-CDPSQRLVADCVLMDV----DTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 246 gD~~~Sv~ll~y~~~~~~L~~va-rD~~~~~vta~~~ld~----~~~l~aD~~gNl~vl~~~~ 303 (478)
|..-..|.++.++........+. -..+..+|.++.+-.+ ..++.+..++.+.+++...
T Consensus 176 gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 98888999988775443332221 1235567888887533 3677788899999998753
No 74
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=97.18 E-value=0.22 Score=49.33 Aligned_cols=176 Identities=11% Similarity=0.069 Sum_probs=90.6
Q ss_pred EEEEecCCceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEE--EeCCEEEEeec--CCcEEE
Q 011732 180 AYSTTWPGMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDC--RDGILF 254 (478)
Q Consensus 180 ~~~~~~~G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~--~~~n~IlvgD~--~~Sv~l 254 (478)
+...+..+.|++|+--. |++|+.+....+.+|..... +.+...........+.++. ..+.+++.+-. ...+.+
T Consensus 170 ~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 170 KFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTG--SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTC--CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred EEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccC--cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence 44456788999987543 67566666777888876642 2122111222233455554 44567766643 345666
Q ss_pred EEEeccCceE--EEE-ecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEE
Q 011732 255 YSYHEDARKL--EQI-YCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSI 330 (478)
Q Consensus 255 l~y~~~~~~L--~~v-arD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~ 330 (478)
..|+...... ... .-......++++.|- |...++.+..++.|.+++... ++ .+...-.-| ...|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-------~~-~~~~~~~gH-~~~V~~v 318 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-------LS-MSKIFKQAH-SFAITEV 318 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-------TE-EEEEETTSS-SSCEEEE
T ss_pred eecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-------Cc-EEEEecCcc-cCCEEEE
Confidence 6666443322 111 112334567888774 444677788899999998643 11 122211223 3345666
Q ss_pred EeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEEecC------HHHHHHHHHHHH
Q 011732 331 RKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPIS------SEEYELLEAVQA 387 (478)
Q Consensus 331 ~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~pi~------e~~~~~L~~LQ~ 387 (478)
. +. | +...++-++.||.|-+.- |+ ...++.|.+||.
T Consensus 319 ~---fS---p--------------dg~~laS~S~D~tvrvw~-ip~~~~~~~s~~~~l~kl~~ 360 (365)
T 4h5i_A 319 T---IS---P--------------DSTYVASVSAANTIHIIK-LPLNYANYTSMKQKISKLEH 360 (365)
T ss_dssp E---EC---T--------------TSCEEEEEETTSEEEEEE-CCTTTTC-------------
T ss_pred E---EC---C--------------CCCEEEEEeCCCeEEEEE-cCCCCcCccCccccceeeec
Confidence 4 22 2 345688899999997764 32 334455555554
No 75
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.16 E-value=0.041 Score=54.35 Aligned_cols=192 Identities=11% Similarity=0.089 Sum_probs=114.3
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCC
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPS 97 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~ 97 (478)
...+.++|+.+.++.++. -..|+++|..+++.+..+.-.. ..+.|+....-.+..+|+.|..
T Consensus 157 v~~~~~~~~~~~l~t~s~-------D~~v~lwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~g~~l~sgs~---------- 218 (354)
T 2pbi_B 157 LSACSFTNSDMQILTASG-------DGTCALWDVESGQLLQSFHGHG-ADVLCLDLAPSETGNTFVSGGC---------- 218 (354)
T ss_dssp EEEEEECSSSSEEEEEET-------TSEEEEEETTTCCEEEEEECCS-SCEEEEEECCCSSCCEEEEEET----------
T ss_pred EEEEEEeCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEEcCCC-CCeEEEEEEeCCCCCEEEEEeC----------
Confidence 455667777666554432 2589999999999887765332 3345544322123367777743
Q ss_pred CCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceE
Q 011732 98 GEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQL 177 (478)
Q Consensus 98 ~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 177 (478)
-|.|.+|++.. . ..+
T Consensus 219 ------Dg~v~~wd~~~---------------------------------------------~--------------~~~ 233 (354)
T 2pbi_B 219 ------DKKAMVWDMRS---------------------------------------------G--------------QCV 233 (354)
T ss_dssp ------TSCEEEEETTT---------------------------------------------C--------------CEE
T ss_pred ------CCeEEEEECCC---------------------------------------------C--------------cEE
Confidence 47899998862 0 011
Q ss_pred EEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEE
Q 011732 178 RLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGIL 253 (478)
Q Consensus 178 ~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ 253 (478)
+.+ ....++|.+++-.. |.+|+.+. ...|.+|++... +.+...........+.++.. .+.++++|..-..|.
T Consensus 234 ~~~--~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~ 309 (354)
T 2pbi_B 234 QAF--ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD--REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309 (354)
T ss_dssp EEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEe--cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE
Confidence 111 23567899988664 45354443 567999999763 21222111112223444443 478999998888888
Q ss_pred EEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEE
Q 011732 254 FYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVL 299 (478)
Q Consensus 254 ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl 299 (478)
++.... ...+..+. .+..+++++.+- |...++.+..+|.+.++
T Consensus 310 vwd~~~-~~~~~~l~--~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 310 VWDVLK-GSRVSILF--GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp EEETTT-CSEEEEEC--CCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EEECCC-CceEEEEE--CCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 865422 22333332 345678888875 44478888899988876
No 76
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.15 E-value=0.18 Score=47.93 Aligned_cols=194 Identities=11% Similarity=0.080 Sum_probs=115.1
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
....++++|+.+.++.+.. -..|+++|..+.+.+..+.-.. ..+.|+..- .+..+|+.|..
T Consensus 67 ~v~~~~~~~~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~l~s~~~--------- 127 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASD-------DKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFN--PQSNLIVSGSF--------- 127 (312)
T ss_dssp CEEEEEECTTSSEEEEEET-------TSEEEEEETTTCCEEEEEECCS-SCEEEEEEC--SSSSEEEEEET---------
T ss_pred ceEEEEEcCCCCEEEEECC-------CCEEEEEECCCCcEEEEEcCCC-CCEEEEEEc--CCCCEEEEEeC---------
Confidence 5678889998887776643 2579999999988877765432 334444321 24467777754
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
.|.|.+|++... ..
T Consensus 128 -------d~~i~iwd~~~~-----------------------------------------------------------~~ 141 (312)
T 4ery_A 128 -------DESVRIWDVKTG-----------------------------------------------------------KC 141 (312)
T ss_dssp -------TSCEEEEETTTC-----------------------------------------------------------CE
T ss_pred -------CCcEEEEECCCC-----------------------------------------------------------EE
Confidence 467899988620 01
Q ss_pred EEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEE--EeCCEEEEeecCCcE
Q 011732 177 LRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDGI 252 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~--~~~n~IlvgD~~~Sv 252 (478)
+..+ ....++|.+++--. |.+|+++. ...|.+|++... +.+.... ......+..+. ..++++++|..-..|
T Consensus 142 ~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
T 4ery_A 142 LKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG--QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216 (312)
T ss_dssp EEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEEC-CSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred EEEe--cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeeEEe-ccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 1111 23467888887554 55455554 556999999762 2233211 11222344444 457899999888888
Q ss_pred EEEEEeccCceEE-EEecCCCCceeEEEEe-e-cCCeEEEeCCCCcEEEEecC
Q 011732 253 LFYSYHEDARKLE-QIYCDPSQRLVADCVL-M-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 253 ~ll~y~~~~~~L~-~varD~~~~~vta~~~-l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
.++.+ ...+.. .+.......++....+ . +...++.+..+|.|.++...
T Consensus 217 ~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 217 KLWDY--SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp EEEET--TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred EEEEC--CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 77654 333333 3332333333332222 2 34467888999999999874
No 77
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.15 E-value=0.24 Score=49.23 Aligned_cols=113 Identities=12% Similarity=0.033 Sum_probs=59.9
Q ss_pred EEecCCceEEEeeeC-CceEEEEe---------CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecC
Q 011732 182 STTWPGMVLAICPYL-DRYFLASA---------GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCR 249 (478)
Q Consensus 182 ~~~~~G~V~ai~~~~-g~~Ll~av---------g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~ 249 (478)
.....+.+.+++--. |++|+++. ...|++|++.. .+.+.. ...+..+..+.. .+++++++...
T Consensus 249 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~--~~~~~~---~~~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 249 KTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK--EKLIDT---IGPPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp ECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT--TEEEEE---EEEEECEEEEEECSSTTEEEEEETT
T ss_pred EecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC--CcEEee---ccCCCCcceEEECCCCCEEEEEecC
Confidence 344456677776543 55465554 34789999875 222222 122223444444 35678777555
Q ss_pred CcEEEEEEeccCceEEEEecCCCCceeEEEEeecCC-eEEEeCC---------------CCcEEEEecC
Q 011732 250 DGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAVVSDR---------------KGSIAVLSCS 302 (478)
Q Consensus 250 ~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~-~~l~aD~---------------~gNl~vl~~~ 302 (478)
++- +..|+...+++...-. ....+.++.+-.++ .+++++. +|.+++++..
T Consensus 324 ~~~-v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 324 CSK-IEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp TTE-EEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred CCE-EEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 542 3335665555443332 23445566654333 4555544 4678888753
No 78
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.11 E-value=0.1 Score=50.08 Aligned_cols=209 Identities=10% Similarity=0.079 Sum_probs=116.2
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeec
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSL 88 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~ 88 (478)
+...+++..|..++++|+.+.+++.............|.++|..+++.+..+..... +.++.+ -.+..+++|+...
T Consensus 34 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~--s~dg~~l~v~~~~ 109 (353)
T 3vgz_A 34 MLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK--PFGATI--NNTTQTLWFGNTV 109 (353)
T ss_dssp EEEEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC--CCSEEE--ETTTTEEEEEETT
T ss_pred hhhhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC--cceEEE--CCCCCEEEEEecC
Confidence 456788899999999999988877764322112257899999999999888876543 333322 1233455555331
Q ss_pred CCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcc
Q 011732 89 SSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIK 168 (478)
Q Consensus 89 ~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 168 (478)
.|.|.+|+....
T Consensus 110 ---------------~~~v~~~d~~~~----------------------------------------------------- 121 (353)
T 3vgz_A 110 ---------------NSAVTAIDAKTG----------------------------------------------------- 121 (353)
T ss_dssp ---------------TTEEEEEETTTC-----------------------------------------------------
T ss_pred ---------------CCEEEEEeCCCC-----------------------------------------------------
Confidence 357777776410
Q ss_pred ccccccceEEEEEEEecCC----------ceEEEeee-CCceEEEEe---CCeEEEEeeCCCCcccceeeeecccceeEE
Q 011732 169 LEETETWQLRLAYSTTWPG----------MVLAICPY-LDRYFLASA---GNAFYVCGFPNDNPQRVRRFAVGRTRFMIM 234 (478)
Q Consensus 169 ~~~~~~~~l~l~~~~~~~G----------~V~ai~~~-~g~~Ll~av---g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~ 234 (478)
+ ++...+..+ .+.++.-- .|++|+++. +.+|++|+... .+.+.............
T Consensus 122 -------~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 122 -------E--VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN--IKLKTAIQNTGKMSTGL 190 (353)
T ss_dssp -------C--EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT--TEEEEEECCCCTTCCCC
T ss_pred -------e--eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC--CceEEEecCCCCccceE
Confidence 0 011111111 13344432 355466665 45688888764 22122211111112233
Q ss_pred EEEEeCCEEEEeecCCcEEEEEEeccCceEEEEec---CCCCceeEEEEee-cCCeEEEeCC-CCcEEEEecC
Q 011732 235 LLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYC---DPSQRLVADCVLM-DVDTAVVSDR-KGSIAVLSCS 302 (478)
Q Consensus 235 sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~var---D~~~~~vta~~~l-d~~~~l~aD~-~gNl~vl~~~ 302 (478)
.+...++++++++.-..+.+ |+...+++..... +.....+.++.+- |.+.+++++. .+.+++++..
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELIT--IDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp EEETTTTEEEEECTTSEEEE--EETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred EECCCCCEEEEEcCCCeEEE--EECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 44456789999988666654 6666665543322 2223345555554 3445555555 4788888753
No 79
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=97.09 E-value=0.098 Score=55.79 Aligned_cols=119 Identities=9% Similarity=0.140 Sum_probs=75.0
Q ss_pred EEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecc-cceeEEEEEE--eCCEEEEeecCCcEEE
Q 011732 180 AYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGR-TRFMIMLLTA--HFTRIAVGDCRDGILF 254 (478)
Q Consensus 180 ~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~-~~~~i~sL~~--~~n~IlvgD~~~Sv~l 254 (478)
+......++|++|+--. |++|+.+. ..++.+|++.... + +.....+. ....|.++.. .+.+|+.|..-+.|.+
T Consensus 485 ~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~-~-~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~l 562 (611)
T 1nr0_A 485 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF-E-LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 562 (611)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-E-ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC-c-eeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEE
Confidence 33455788999988554 56555554 5669999987421 1 22111111 2224555554 4679999999999988
Q ss_pred EEEeccCceEEEEecCCC-CceeEEEEeecCCeEEEeCCCCcEEEEec
Q 011732 255 YSYHEDARKLEQIYCDPS-QRLVADCVLMDVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 255 l~y~~~~~~L~~varD~~-~~~vta~~~ld~~~~l~aD~~gNl~vl~~ 301 (478)
+.++.....+..+ ...+ ...|+++.|..++.++.+..+|.|.+.+.
T Consensus 563 W~~~~~~~~~~~~-~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 563 WNMNKPSDHPIII-KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609 (611)
T ss_dssp EETTCTTSCCEEE-TTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred EECCCcccccchh-hccCcccCeeEEEEcCCCEEEEecCCCCEEEEec
Confidence 7664322222122 2334 56788999887777888888999998875
No 80
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.24 Score=48.08 Aligned_cols=116 Identities=15% Similarity=0.048 Sum_probs=72.4
Q ss_pred ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecc-cceeEEEEEEeC----CEEEEeecCCcEEEEE
Q 011732 184 TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGR-TRFMIMLLTAHF----TRIAVGDCRDGILFYS 256 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~-~~~~i~sL~~~~----n~IlvgD~~~Sv~ll~ 256 (478)
...++|.+|+--. +.+|+.+. ..+|.+|+....+ ...+..+. ....|.++.... .+++.|..-..|.++.
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEE
Confidence 3568899987554 55354443 5669999886421 11122222 223466666543 4778888888898887
Q ss_pred EeccC----c--eEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 257 YHEDA----R--KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 257 y~~~~----~--~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
+.... . .....-......++.++.+-+++.++.+..+|.+.+++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEE
T ss_pred ecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcC
Confidence 75421 1 2222223346678888888766688888899999999864
No 81
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.06 E-value=0.059 Score=54.59 Aligned_cols=212 Identities=13% Similarity=0.111 Sum_probs=123.2
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCC----------CcEEEEEECCCCCceEEEEEEEECC
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS----------GSVLSSFKLELGETGKSMELVRVGH 78 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t----------~~~i~~~~l~~~E~~~s~~~~~l~~ 78 (478)
.+.++-...+.+|+|+|+.+.+++.++. .+.|+++|..+ ++.+..+.-... .+.++.. .-.+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~------dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~-~~~~ 193 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTP------SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSW-NPNL 193 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECS------SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEE-CTTS
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECC------CCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEe-CCCC
Confidence 5677888899999999974444443331 24689998765 444444443222 3344322 1112
Q ss_pred eeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCC
Q 011732 79 EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSS 158 (478)
Q Consensus 79 ~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (478)
..+|+.|.. .|.|.+|++....
T Consensus 194 ~~~l~s~~~----------------dg~i~vwd~~~~~------------------------------------------ 215 (430)
T 2xyi_A 194 NGYLLSASD----------------DHTICLWDINATP------------------------------------------ 215 (430)
T ss_dssp TTEEEEECT----------------TSCEEEEETTSCC------------------------------------------
T ss_pred CCeEEEEeC----------------CCeEEEEeCCCCC------------------------------------------
Confidence 337777733 5889999997310
Q ss_pred CCCCCcCCccccccccceEEEEEE-EecCCceEEEeeeC--CceEEEEe-CCeEEEEeeCCCCc-ccceeeeecccceeE
Q 011732 159 PDDASCDGIKLEETETWQLRLAYS-TTWPGMVLAICPYL--DRYFLASA-GNAFYVCGFPNDNP-QRVRRFAVGRTRFMI 233 (478)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~l~l~~~-~~~~G~V~ai~~~~--g~~Ll~av-g~~l~v~~l~~~~~-~~L~~~a~~~~~~~i 233 (478)
. ....+..... ....++|.+|+-.. +.+|+++. ...|++|++..... +.+.... .....+
T Consensus 216 -~------------~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v 280 (430)
T 2xyi_A 216 -K------------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD--AHTAEV 280 (430)
T ss_dssp -B------------GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE--CCSSCE
T ss_pred -C------------CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee--cCCCCe
Confidence 0 0011221121 24567899988654 45333333 56799999986321 1122221 223346
Q ss_pred EEEEEe--CC-EEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCC--eEEEeCCCCcEEEEecCC
Q 011732 234 MLLTAH--FT-RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD--TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 234 ~sL~~~--~n-~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~--~~l~aD~~gNl~vl~~~~ 303 (478)
.+|... +. ++++|..-..|.++.++.....+..+. .....++++.+-..+ .++.+..+|.|.+++...
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 666654 43 677888888888877654333333332 245578888875433 477788899999999864
No 82
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.04 E-value=0.19 Score=48.97 Aligned_cols=193 Identities=10% Similarity=0.018 Sum_probs=105.6
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~~~ 95 (478)
....++++|+.+.++.+.. -..|+++|..+++.+..+.-.. ..+.|+ .+. +..+|+.|..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~-------D~~v~lwd~~~~~~~~~~~~h~-~~v~~v---~~sp~~~~l~s~~~-------- 138 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSW-------DKTLRLWDLRTGTTYKRFVGHQ-SEVYSV---AFSPDNRQILSAGA-------- 138 (343)
T ss_dssp CEEEEEECSSTTEEEEEET-------TSEEEEEETTSSCEEEEEECCC-SCEEEE---EECSSTTEEEEEET--------
T ss_pred ceEEEEECCCCCEEEEEcC-------CCcEEEEECCCCcEEEEEcCCC-CcEEEE---EECCCCCEEEEEcC--------
Confidence 4567888887776654432 2589999999998877665332 234444 333 3467776643
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
.|.|.+|++....
T Consensus 139 --------d~~i~~wd~~~~~----------------------------------------------------------- 151 (343)
T 2xzm_R 139 --------EREIKLWNILGEC----------------------------------------------------------- 151 (343)
T ss_dssp --------TSCEEEEESSSCE-----------------------------------------------------------
T ss_pred --------CCEEEEEeccCCc-----------------------------------------------------------
Confidence 4788899875100
Q ss_pred eEEEEEEEecCCceEEEeeeC-----------CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCC
Q 011732 176 QLRLAYSTTWPGMVLAICPYL-----------DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFT 241 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~-----------g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n 241 (478)
...........+.|.+++--. +.+|+.+. ...|.+|+... +.+.. +......|.++.. .+.
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~--~~~h~~~v~~~~~s~~g~ 226 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---QIRYT--FKAHESNVNHLSISPNGK 226 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---EEEEE--EECCSSCEEEEEECTTSS
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC---ceeEE--EcCccccceEEEECCCCC
Confidence 000000001223344433221 23344443 67799998432 21221 2122234555554 467
Q ss_pred EEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 242 RIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 242 ~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+|+.|..-..|.++...........+.. ...+.++.|-.+..++++-.++.+.++....
T Consensus 227 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~---~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 227 YIATGGKDKKLLIWDILNLTYPQREFDA---GSTINQIAFNPKLQWVAVGTDQGVKIFNLMT 285 (343)
T ss_dssp EEEEEETTCEEEEEESSCCSSCSEEEEC---SSCEEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred EEEEEcCCCeEEEEECCCCcccceeecC---CCcEEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 9999998888888765322222222211 2246777775455566665677899888643
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.03 E-value=0.021 Score=57.01 Aligned_cols=199 Identities=10% Similarity=0.016 Sum_probs=114.0
Q ss_pred CCcCEEEEecCCC-eEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEE-CCCCCceEEEEEEEECCeeEEEEeeecCCCCC
Q 011732 16 GTPKKVLYHSESR-LLIVMRTELNNDTCSSDICCVDPLSGSVLSSFK-LELGETGKSMELVRVGHEQVLVVGTSLSSGPA 93 (478)
Q Consensus 16 ~tp~ki~y~~~~~-~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~-l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~ 93 (478)
..+..++++|+.+ .++.+.. -..|+++|..+++.+..+. ......+.|++.- .+..+|++|+.
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~------ 196 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGC-------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS--RDGALICTSCR------ 196 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEET-------TSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC--TTSSCEEEEET------
T ss_pred CeEEEEEECcCCCCEEEEEcC-------CCEEEEEECCCCCccEEEecCCCCCceEEEEEC--CCCCEEEEEec------
Confidence 3677899999874 5544432 2479999999998887764 2234455555432 24567777753
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
.|.|.+|++...
T Consensus 197 ----------d~~i~iwd~~~~---------------------------------------------------------- 208 (402)
T 2aq5_A 197 ----------DKRVRVIEPRKG---------------------------------------------------------- 208 (402)
T ss_dssp ----------TSEEEEEETTTT----------------------------------------------------------
T ss_pred ----------CCcEEEEeCCCC----------------------------------------------------------
Confidence 478999988620
Q ss_pred cceEEEEEEEecCCc-eEEEeeeC-CceEEEE----eCCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEE-
Q 011732 174 TWQLRLAYSTTWPGM-VLAICPYL-DRYFLAS----AGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIA- 244 (478)
Q Consensus 174 ~~~l~l~~~~~~~G~-V~ai~~~~-g~~Ll~a----vg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~Il- 244 (478)
+..........++ +.++.-.. |.+|+++ ....|.+|++..... .+.. ........+.++.. .+++++
T Consensus 209 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~v~~~~~s~~~~~l~~ 284 (402)
T 2aq5_A 209 --TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-PLSL-QELDTSSGVLLPFFDPDTNIVYL 284 (402)
T ss_dssp --EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-CSEE-EECCCCSSCEEEEEETTTTEEEE
T ss_pred --ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-CceE-EeccCCCceeEEEEcCCCCEEEE
Confidence 1111111233343 56655444 5544444 356699999876321 1221 22223334555544 466775
Q ss_pred EeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 245 VGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 245 vgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
+|..-..|.++.+......+..+..-.....+.++.+..++.++++ .++.+.+++..
T Consensus 285 ~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~ 341 (402)
T 2aq5_A 285 CGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLH 341 (402)
T ss_dssp EETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEE
T ss_pred EEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-cceeEEEEEcC
Confidence 4556678888877654432554444335567778887655555544 34467777654
No 84
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.03 E-value=0.04 Score=54.96 Aligned_cols=139 Identities=8% Similarity=-0.065 Sum_probs=73.4
Q ss_pred ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEe---ecCCcEEEEE
Q 011732 184 TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVG---DCRDGILFYS 256 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~Ilvg---D~~~Sv~ll~ 256 (478)
...++|++++--. |.+|+++. ..+|++|++... +.+...........+.++.. .+.++++| ..-..|.++.
T Consensus 174 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG--TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp TCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC--ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence 3578899888653 55465554 567999999762 22322211111112333333 35566666 4455565554
Q ss_pred EeccCceEEEEecCCCCceeEEEEeecCC-eE-EEeCCCCcEEEEecCCCcccCCCCCccceeeeeeecCccccEEEe
Q 011732 257 YHEDARKLEQIYCDPSQRLVADCVLMDVD-TA-VVSDRKGSIAVLSCSDRLEDNASPECNLTPNCAYHMGEIAVSIRK 332 (478)
Q Consensus 257 y~~~~~~L~~varD~~~~~vta~~~ld~~-~~-l~aD~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~vt~~~~ 332 (478)
.+.....+....- .....+.++.+-.++ .+ +++..+|.|.+++.... +..+.....+..+..++++..
T Consensus 252 ~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~-------~~~~~~l~~~~~~~~v~~~~~ 321 (402)
T 2aq5_A 252 TKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE-------APFLHYLSMFSSKESQRGMGY 321 (402)
T ss_dssp TTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS-------TTCEEEEEEECCSSCCSEEEE
T ss_pred CccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC-------CcceEeecccccCCcccceEE
Confidence 3322221222221 223446666664443 44 45677999999998642 112445555555566777754
No 85
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.02 E-value=0.12 Score=51.68 Aligned_cols=117 Identities=9% Similarity=0.018 Sum_probs=69.3
Q ss_pred ecCCceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceee-----eecccceeEEEEEEe--C-CEEEEeecCCcEEE
Q 011732 184 TWPGMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRF-----AVGRTRFMIMLLTAH--F-TRIAVGDCRDGILF 254 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~-----a~~~~~~~i~sL~~~--~-n~IlvgD~~~Sv~l 254 (478)
...++|++++-.. |.+|+.+....|.+|++.... +.+... .+......|.++... + +++++|..-..|.+
T Consensus 175 ~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 175 AHTYHINSISINSDYETYLSADDLRINLWHLEITD-RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp CCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEE-EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCC-ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence 4678899888554 565777766779999998421 112211 111223356666654 4 78999998888888
Q ss_pred EEEeccCc---eEEEEecCCCC----------ceeEEEEeecCC-eEEEeCCCCcEEEEecC
Q 011732 255 YSYHEDAR---KLEQIYCDPSQ----------RLVADCVLMDVD-TAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 255 l~y~~~~~---~L~~varD~~~----------~~vta~~~ld~~-~~l~aD~~gNl~vl~~~ 302 (478)
+..+.... .+..+.....+ ..++++.+-.++ .+++++. |.+.+++..
T Consensus 254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~ 314 (447)
T 3dw8_B 254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN 314 (447)
T ss_dssp EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence 65433221 02222222111 267777775443 5666666 999999875
No 86
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.98 E-value=0.25 Score=46.43 Aligned_cols=112 Identities=11% Similarity=0.135 Sum_probs=65.9
Q ss_pred ceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCEEEEeecCCcEEEEEEeccCce
Q 011732 188 MVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHEDARK 263 (478)
Q Consensus 188 ~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~IlvgD~~~Sv~ll~y~~~~~~ 263 (478)
.+.+|+--. |. |.++- +++|++|+... +.+...........+..|... ++.++|+|....=.+..|+.+...
T Consensus 165 ~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g---~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~ 240 (286)
T 1q7f_A 165 FPNGVVVNDKQE-IFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL 240 (286)
T ss_dssp SEEEEEECSSSE-EEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE
T ss_pred CcEEEEECCCCC-EEEEECCCCEEEEEcCCC---CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCE
Confidence 466676554 45 66664 66799998643 323332211111245566654 357888887653223445666666
Q ss_pred EEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 264 LEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 264 L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+..+........+.++.+-.++.++++|.++.|.++++..
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 241 ISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred EEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 6666554433345566654455777778888899998754
No 87
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.98 E-value=0.31 Score=47.56 Aligned_cols=249 Identities=11% Similarity=0.036 Sum_probs=141.8
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCC-ceEEEEEEEEC-CeeEEEEeeecCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGE-TGKSMELVRVG-HEQVLVVGTSLSSGPAI 94 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E-~~~s~~~~~l~-~~~~l~VGT~~~~g~~~ 94 (478)
..+.++++|+.+.++.+..+ ..++++|..+.+......|...+ .+.|+ .+. +..+|+.|..
T Consensus 63 ~v~~~~~sp~g~~l~s~s~D-------~~v~iw~~~~~~~~~~~~~~~h~~~v~~v---~~sp~~~~l~s~s~------- 125 (345)
T 3fm0_A 63 TVRKVAWSPCGNYLASASFD-------ATTCIWKKNQDDFECVTTLEGHENEVKSV---AWAPSGNLLATCSR------- 125 (345)
T ss_dssp CEEEEEECTTSSEEEEEETT-------SCEEEEEECCC-EEEEEEECCCSSCEEEE---EECTTSSEEEEEET-------
T ss_pred cEEEEEECCCCCEEEEEECC-------CcEEEEEccCCCeEEEEEccCCCCCceEE---EEeCCCCEEEEEEC-------
Confidence 57889999998887776532 46888887665432233444333 34444 333 4567777743
Q ss_pred CCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccccc
Q 011732 95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET 174 (478)
Q Consensus 95 ~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 174 (478)
-|.|.+|++...
T Consensus 126 ---------D~~v~iwd~~~~----------------------------------------------------------- 137 (345)
T 3fm0_A 126 ---------DKSVWVWEVDEE----------------------------------------------------------- 137 (345)
T ss_dssp ---------TSCEEEEEECTT-----------------------------------------------------------
T ss_pred ---------CCeEEEEECCCC-----------------------------------------------------------
Confidence 467999999720
Q ss_pred ceEEEEEE-EecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeee-ecccceeEEEEEE--eCCEEEEeec
Q 011732 175 WQLRLAYS-TTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTA--HFTRIAVGDC 248 (478)
Q Consensus 175 ~~l~l~~~-~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a-~~~~~~~i~sL~~--~~n~IlvgD~ 248 (478)
...+.+.. ....++|.+++-.. +.+|+.+. ...|.+|+.... + ..... +......|.+|.. .+++++.|..
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~--~-~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED--D-WVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT--E-EEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC--C-EEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 01222222 23567888887554 45455554 566999998752 1 22112 2122335666655 4689999998
Q ss_pred CCcEEEEEEeccCc-------------eEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCCCcccCCCCCcc
Q 011732 249 RDGILFYSYHEDAR-------------KLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSDRLEDNASPECN 314 (478)
Q Consensus 249 ~~Sv~ll~y~~~~~-------------~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~~~~~s~~~~~~ 314 (478)
-..|.++....... +............+.++.+- +...++.+..++.+.++....... ...+ .
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~-~~~~--~ 291 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD-PQQP--T 291 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSC-TTSC--C
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCC-ccee--e
Confidence 88998876532110 11222233456677777764 344788888899999998764211 1111 2
Q ss_pred ceeeeeeec--CccccEEEeeeeeccCCCCCccccccccCCCCCcEEEEEeCCCceEEEEecC
Q 011732 315 LTPNCAYHM--GEIAVSIRKGSFIYKLPADDALGDCLASFESSQTTIIASTLLGSIVIFIPIS 375 (478)
Q Consensus 315 L~~~~~fhl--Gd~vt~~~~gsl~~~~~~~~~~~~~~~~~~~~~~~il~~T~~GsIg~i~pi~ 375 (478)
+....+.+- .+.|+++.. .| .....+..++.+|.|-+--.-+
T Consensus 292 ~~~~~~~~~~h~~~V~~v~~------~p-------------~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 292 FSLTAHLHQAHSQDVNCVAW------NP-------------KEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp EEEEEEETTSSSSCEEEEEE------CS-------------SSTTEEEEEETTSCEEEEEECC
T ss_pred EEEEeeecccccCcEeEeEE------eC-------------CCceEEEEcCCCCcEEEEEecC
Confidence 222233222 234555532 12 1223577788999998776554
No 88
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.98 E-value=0.042 Score=53.79 Aligned_cols=157 Identities=10% Similarity=0.048 Sum_probs=95.2
Q ss_pred CCCcCEEEEec-CCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCC
Q 011732 15 GGTPKKVLYHS-ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGP 92 (478)
Q Consensus 15 ~~tp~ki~y~~-~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~ 92 (478)
......++++| ..+.++.++. ...|+++|..+++.+..+.++ +.+.++...... +..++++|+.
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----- 164 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSF-------DKTLKVWDTNTLQTADVFNFE--ETVYSHHMSPVSTKHCLVAVGTR----- 164 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEET-------TSEEEEEETTTTEEEEEEECS--SCEEEEEECSSCSSCCEEEEEES-----
T ss_pred CCcEEEEEEccCCCcEEEEEeC-------CCeEEEeeCCCCccceeccCC--CceeeeEeecCCCCCcEEEEEcC-----
Confidence 34678889999 4445555432 358999999999988887754 455565554333 2358888754
Q ss_pred CCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccc
Q 011732 93 AIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEET 172 (478)
Q Consensus 93 ~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 172 (478)
.|.|.+|++... .
T Consensus 165 -----------~~~v~~~d~~~~--------------------------------------------~------------ 177 (408)
T 4a11_B 165 -----------GPKVQLCDLKSG--------------------------------------------S------------ 177 (408)
T ss_dssp -----------SSSEEEEESSSS--------------------------------------------C------------
T ss_pred -----------CCeEEEEeCCCc--------------------------------------------c------------
Confidence 578999988621 0
Q ss_pred ccceEEEEEEEecCCceEEEeeeCC-ce-EEEEe-CCeEEEEeeCCCCcccceee-------------eecccceeEEEE
Q 011732 173 ETWQLRLAYSTTWPGMVLAICPYLD-RY-FLASA-GNAFYVCGFPNDNPQRVRRF-------------AVGRTRFMIMLL 236 (478)
Q Consensus 173 ~~~~l~l~~~~~~~G~V~ai~~~~g-~~-Ll~av-g~~l~v~~l~~~~~~~L~~~-------------a~~~~~~~i~sL 236 (478)
.+..+ ....++|++++-..+ .+ |+++. ...|.+|++..... .+... ........|.++
T Consensus 178 ---~~~~~--~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 178 ---CSHIL--QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp ---CCEEE--CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred ---eeeee--cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEE
Confidence 01111 235788999886653 43 43333 56699999875321 11111 001223346666
Q ss_pred EE--eCCEEEEeecCCcEEEEEEe
Q 011732 237 TA--HFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 237 ~~--~~n~IlvgD~~~Sv~ll~y~ 258 (478)
.. .++++++|..-..+.++...
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT
T ss_pred EEcCCCCEEEEecCCCeEEEEECC
Confidence 55 46788888888888776643
No 89
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.97 E-value=0.051 Score=53.27 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=42.1
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCC----ceEEEEE
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGE----TGKSMEL 73 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E----~~~s~~~ 73 (478)
+++|+.+..|+.|+++++.++|+... +...|..+|+.|++++..+....+. .+..+++
T Consensus 77 ~~~i~~~~~p~~i~~~~~g~lyv~~~-------~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~ 138 (328)
T 3dsm_A 77 VGRITGFTSPRYIHFLSDEKAYVTQI-------WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ 138 (328)
T ss_dssp EEEEECCSSEEEEEEEETTEEEEEEB-------SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE
T ss_pred EEEcCCCCCCcEEEEeCCCeEEEEEC-------CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE
Confidence 46788888999999988876554431 2468999999999998888876522 4545544
No 90
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.92 E-value=0.29 Score=46.43 Aligned_cols=208 Identities=12% Similarity=0.063 Sum_probs=115.1
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCC--CCc--EEEEEECCCCCceEEEEEEEEC-CeeEE
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL--SGS--VLSSFKLELGETGKSMELVRVG-HEQVL 82 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~--t~~--~i~~~~l~~~E~~~s~~~~~l~-~~~~l 82 (478)
.++.++.+..|..++++|+.+.++++... ...|++++.. +++ .+..+.... .+.+++ +. +..++
T Consensus 30 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~s~dg~~l 98 (343)
T 1ri6_A 30 LTQVVDVPGQVQPMVVSPDKRYLYVGVRP------EFRVLAYRIAPDDGALTFAAESALPG--SLTHIS---TDHQGQFV 98 (343)
T ss_dssp EEEEEECSSCCCCEEECTTSSEEEEEETT------TTEEEEEEECTTTCCEEEEEEEECSS--CCSEEE---ECTTSSEE
T ss_pred EeeeEecCCCCceEEECCCCCEEEEeecC------CCeEEEEEecCCCCceeeccccccCC--CCcEEE---EcCCCCEE
Confidence 45667888899999999999977776532 1467886654 444 445554432 444333 33 34566
Q ss_pred EEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCC
Q 011732 83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDA 162 (478)
Q Consensus 83 ~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++.. ..|.|.+|++.. .
T Consensus 99 ~~~~~---------------~~~~i~~~d~~~---------------------------------------------~-- 116 (343)
T 1ri6_A 99 FVGSY---------------NAGNVSVTRLED---------------------------------------------G-- 116 (343)
T ss_dssp EEEET---------------TTTEEEEEEEET---------------------------------------------T--
T ss_pred EEEec---------------CCCeEEEEECCC---------------------------------------------C--
Confidence 55533 157899999851 0
Q ss_pred CcCCccccccccceEEEEEEEecCCceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeee----ecccceeEEE
Q 011732 163 SCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFA----VGRTRFMIML 235 (478)
Q Consensus 163 ~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a----~~~~~~~i~s 235 (478)
...+.+........+.+++--. |++|+++. +.+|.+|++..+.+ +.... .......+..
T Consensus 117 ------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~ 182 (343)
T 1ri6_A 117 ------------LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH--LVAQDPAEVTTVEGAGPRH 182 (343)
T ss_dssp ------------EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC--EEEEEEEEEECSTTCCEEE
T ss_pred ------------ccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc--eeeecccccccCCCCCcce
Confidence 0122333334444566555433 45566664 57799999975322 33211 1122223444
Q ss_pred EEE--eCCEEEEeecC-CcEEEEEEeccCceEE---EEec---C-CCCceeEEEEeecCC-eEEEeC-CCCcEEEEecC
Q 011732 236 LTA--HFTRIAVGDCR-DGILFYSYHEDARKLE---QIYC---D-PSQRLVADCVLMDVD-TAVVSD-RKGSIAVLSCS 302 (478)
Q Consensus 236 L~~--~~n~IlvgD~~-~Sv~ll~y~~~~~~L~---~var---D-~~~~~vta~~~ld~~-~~l~aD-~~gNl~vl~~~ 302 (478)
+.. .++++++++.. ..+.++.++...+++. .+.. . ....++.++.+-.++ .+++++ .++.+.+++..
T Consensus 183 ~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 183 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 444 46778887744 4576766544333332 2221 1 113455566664333 455455 67889998875
No 91
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.024 Score=62.39 Aligned_cols=202 Identities=8% Similarity=0.006 Sum_probs=121.0
Q ss_pred CcCEEEEecC--CCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECC-CCCceEEEEEEEECC--eeEEEEeeecCCC
Q 011732 17 TPKKVLYHSE--SRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE-LGETGKSMELVRVGH--EQVLVVGTSLSSG 91 (478)
Q Consensus 17 tp~ki~y~~~--~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~-~~E~~~s~~~~~l~~--~~~l~VGT~~~~g 91 (478)
..+.++++|. .+.++.++. -+.|+++|..+++......+. ....+.|+..- .+ ..++++|+.
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~-------Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s--p~~~~~~l~sgs~---- 121 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSY-------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA--PHEYGPLLLVASS---- 121 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEET-------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC--CGGGCSEEEEEET----
T ss_pred ceEEEEecCCCCCCEEEEEeC-------CCeEEEEECCCCcccccccccCCCCCeEEEEEC--CCCCCCEEEEEeC----
Confidence 5677888776 555555542 247999998877633333333 23445554331 22 467888754
Q ss_pred CCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccc
Q 011732 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (478)
.|.|.+|++....
T Consensus 122 ------------dg~I~vwdl~~~~------------------------------------------------------- 134 (753)
T 3jro_A 122 ------------DGKVSVVEFKENG------------------------------------------------------- 134 (753)
T ss_dssp ------------TSEEEEEECCSSS-------------------------------------------------------
T ss_pred ------------CCcEEEEEeecCC-------------------------------------------------------
Confidence 5789999997310
Q ss_pred cccceEEEEEEEecCCceEEEeeeC--------------CceEEEEe-CCeEEEEeeCCCCcccceeee-ecccceeEEE
Q 011732 172 TETWQLRLAYSTTWPGMVLAICPYL--------------DRYFLASA-GNAFYVCGFPNDNPQRVRRFA-VGRTRFMIML 235 (478)
Q Consensus 172 ~~~~~l~l~~~~~~~G~V~ai~~~~--------------g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a-~~~~~~~i~s 235 (478)
...........++|++++-.. +.+|+++. ...|++|++...... ..... +......|++
T Consensus 135 ----~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 135 ----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRD 209 (753)
T ss_dssp ----CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-EEEEEEECCCSSCEEE
T ss_pred ----CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-ceeeeeecCCCCcEEE
Confidence 000111234677888887654 55466655 556999999763211 12222 2222345677
Q ss_pred EEEe-----CCEEEEeecCCcEEEEEEeccCce--EEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 236 LTAH-----FTRIAVGDCRDGILFYSYHEDARK--LEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 236 L~~~-----~n~IlvgD~~~Sv~ll~y~~~~~~--L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
+... +++++.|+.-..|.++..+..... ............++++.+- +...++++..+|.|.+++...
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 7655 668889998888998877553221 1222223355667777774 444788889999999998764
No 92
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.81 E-value=0.33 Score=48.93 Aligned_cols=167 Identities=10% Similarity=0.056 Sum_probs=100.7
Q ss_pred eEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCc
Q 011732 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSM 123 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~ 123 (478)
..|+++|..+++.+..+.-. ...+.|++.- .+..++++|+. .|.|.+|++..
T Consensus 290 ~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~sg~~----------------dg~i~vwd~~~--------- 341 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLYILSGH-TDRIYSTIYD--HERKRCISASM----------------DTTIRIWDLEN--------- 341 (464)
T ss_dssp SCEEEEETTTTEEEEEECCC-SSCEEEEEEE--TTTTEEEEEET----------------TSCEEEEETTT---------
T ss_pred CeEEEEECCCCcEEEEecCC-CCCEEEEEEc--CCCCEEEEEeC----------------CCcEEEEECCC---------
Confidence 57999999999887765432 3345554432 34567887754 47899998862
Q ss_pred cccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEE-EecCCceEEEeeeCCceEEE
Q 011732 124 TFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYS-TTWPGMVLAICPYLDRYFLA 202 (478)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~-~~~~G~V~ai~~~~g~~Ll~ 202 (478)
| + .+.. ....++|.++..- +.+|+.
T Consensus 342 ------------------------------------------~---------~--~~~~~~~h~~~v~~~~~~-~~~l~s 367 (464)
T 3v7d_B 342 ------------------------------------------G---------E--LMYTLQGHTALVGLLRLS-DKFLVS 367 (464)
T ss_dssp ------------------------------------------T---------E--EEEEECCCSSCEEEEEEC-SSEEEE
T ss_pred ------------------------------------------C---------c--EEEEEeCCCCcEEEEEEc-CCEEEE
Confidence 0 1 1121 2356888888754 664666
Q ss_pred Ee-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEe
Q 011732 203 SA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVL 281 (478)
Q Consensus 203 av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ 281 (478)
+. ...|.+|++... +.... ........+..+...++++++|. -..+.+ |+...+++...-.-.....+.++.+
T Consensus 368 ~s~dg~v~vwd~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-dg~i~i--wd~~~g~~~~~~~~~~~~~v~~v~~ 441 (464)
T 3v7d_B 368 AAADGSIRGWDANDY--SRKFS-YHHTNLSAITTFYVSDNILVSGS-ENQFNI--YNLRSGKLVHANILKDADQIWSVNF 441 (464)
T ss_dssp EETTSEEEEEETTTC--CEEEE-EECTTCCCEEEEEECSSEEEEEE-TTEEEE--EETTTCCEEESCTTTTCSEEEEEEE
T ss_pred EeCCCcEEEEECCCC--ceeee-ecCCCCccEEEEEeCCCEEEEec-CCeEEE--EECCCCcEEehhhccCCCcEEEEEe
Confidence 55 567999999862 11221 12334456677778889999988 455554 5656666654322334566777777
Q ss_pred ecCCeEEEeCCCCcEEE
Q 011732 282 MDVDTAVVSDRKGSIAV 298 (478)
Q Consensus 282 ld~~~~l~aD~~gNl~v 298 (478)
-+...+++++.+|..++
T Consensus 442 ~~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 442 KGKTLVAAVEKDGQSFL 458 (464)
T ss_dssp ETTEEEEEEEETTEEEE
T ss_pred cCCEEEEEEEeCCeEEE
Confidence 33334555566665443
No 93
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.76 E-value=0.014 Score=59.41 Aligned_cols=202 Identities=11% Similarity=0.069 Sum_probs=115.7
Q ss_pred eCCCCcCEEEEecCC-CeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCC-CceEEEEEEEECCeeEEEEeeecCC
Q 011732 13 HLGGTPKKVLYHSES-RLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG-ETGKSMELVRVGHEQVLVVGTSLSS 90 (478)
Q Consensus 13 ~L~~tp~ki~y~~~~-~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~-E~~~s~~~~~l~~~~~l~VGT~~~~ 90 (478)
+-......|+|||.. +++++++. -+.|+|+|..+.+....+.+... ..|.|++.- -.+..+|+.|..
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~-------dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~-p~~~~~l~s~s~--- 185 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSK-------GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFN-PLNTNQFYASSM--- 185 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEET-------TSCEEEECSSCCSCCEEECCCSSSCCCCEEEEC-SSCTTEEEEECS---
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeC-------CCEEEEEECCCCCceeEEEccCCCCCEEEEEEe-CCCCCEEEEEeC---
Confidence 344457789999955 45555542 24799999888776555555433 345555431 123456765532
Q ss_pred CCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccc
Q 011732 91 GPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLE 170 (478)
Q Consensus 91 g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 170 (478)
-|.|.+|++..
T Consensus 186 -------------D~~v~iwd~~~-------------------------------------------------------- 196 (435)
T 4e54_B 186 -------------EGTTRLQDFKG-------------------------------------------------------- 196 (435)
T ss_dssp -------------SSCEEEEETTS--------------------------------------------------------
T ss_pred -------------CCEEEEeeccC--------------------------------------------------------
Confidence 36788888751
Q ss_pred ccccceEEEEEE-EecCCceEEEeee-CCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe--C-CEEE
Q 011732 171 ETETWQLRLAYS-TTWPGMVLAICPY-LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH--F-TRIA 244 (478)
Q Consensus 171 ~~~~~~l~l~~~-~~~~G~V~ai~~~-~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~--~-n~Il 244 (478)
..++.+.. ......+.+++-- .+.+|++|. ...|++|++.. +.+..... ..-.|.++... + .+++
T Consensus 197 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~---~~~~~~~~--h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 197 ----NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG---KELWNLRM--HKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp ----CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS---CBCCCSBC--CSSCEEEEEECTTCSSEEE
T ss_pred ----CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc---ceeEEEec--ccceEEeeeecCCCceEEE
Confidence 12222221 2233455666543 356454443 35699999864 22332221 22346666654 3 4666
Q ss_pred EeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 245 VGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 245 vgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
.|..-..|.++..+.............+...|+++.|- |...++.+..+|.|.++....
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence 77777778776543322222222233455677777764 445788889999999998754
No 94
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=96.74 E-value=0.21 Score=51.82 Aligned_cols=186 Identities=7% Similarity=0.058 Sum_probs=112.4
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCC
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~ 95 (478)
..++.++|+|+.+.+++++. -..|+++|. +++.+..+.-. ...+.+++. -.+..+|+.|..
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~-------d~~v~~~~~-~~~~~~~~~~~-~~~v~~~~~--s~d~~~l~~~~~-------- 446 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASD-------DKTVKLWNR-NGQLLQTLTGH-SSSVWGVAF--SPDDQTIASASD-------- 446 (577)
T ss_dssp SCEEEEEECTTSSCEEEEET-------TSEEEEECT-TCCEEEEEECC-SSCEEEEEE--CTTSSEEEEEET--------
T ss_pred CCeEEEEECCCCCEEEEEeC-------CCEEEEEeC-CCCEEEEecCC-CCCeEEEEE--CCCCCEEEEEcC--------
Confidence 35778889998888776643 247899985 56666655433 234444432 134577777643
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
.|.|.+|+... .
T Consensus 447 --------d~~v~~w~~~~------------------------------------------------------------~ 458 (577)
T 2ymu_A 447 --------DKTVKLWNRNG------------------------------------------------------------Q 458 (577)
T ss_dssp --------TSEEEEEETTS------------------------------------------------------------C
T ss_pred --------CCEEEEEECCC------------------------------------------------------------C
Confidence 46788887531 1
Q ss_pred eEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCc
Q 011732 176 QLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDG 251 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~S 251 (478)
.++. -....++|++++--. |++|+.+. ...|++|+... +.++.... ....|++|.. .+.+++.|+.-..
T Consensus 459 ~~~~--~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~---~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~ 531 (577)
T 2ymu_A 459 LLQT--LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKT 531 (577)
T ss_dssp EEEE--EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS---CEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSE
T ss_pred EEEE--EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC---CEEEEEeC--CCCCEEEEEEcCCCCEEEEEECcCE
Confidence 1211 234678898887554 56455444 45699998643 33443222 2234566654 4678888888888
Q ss_pred EEEEEEeccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEE
Q 011732 252 ILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVL 299 (478)
Q Consensus 252 v~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl 299 (478)
|.++. .....+..+. .+...|+++.|.. ...++.+..+|.|++.
T Consensus 532 v~lwd--~~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 532 VKLWN--RNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp EEEEC--TTSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEe--CCCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 87754 3333333332 3456788888864 4467778888988765
No 95
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.74 E-value=0.37 Score=46.86 Aligned_cols=94 Identities=14% Similarity=0.025 Sum_probs=58.9
Q ss_pred eEEEeee-CCceEEEEe-C--CeEEEEeeCCCCcccceeeeecccceeEEEE--EEeCCEEEEeec-CCcEEEEEEeccC
Q 011732 189 VLAICPY-LDRYFLASA-G--NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLL--TAHFTRIAVGDC-RDGILFYSYHEDA 261 (478)
Q Consensus 189 V~ai~~~-~g~~Ll~av-g--~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL--~~~~n~IlvgD~-~~Sv~ll~y~~~~ 261 (478)
+.+|+-- .|++|+++. + +.|.+|++...+. .++.+........+..+ +..+++|++++. -..+.+++++.+.
T Consensus 261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g-~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG-TLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC-CEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC-cEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 3455432 467665654 3 6799999974222 24443333322233344 445788999984 5689999999888
Q ss_pred ceEEEEecCCCCceeEEEEeec
Q 011732 262 RKLEQIYCDPSQRLVADCVLMD 283 (478)
Q Consensus 262 ~~L~~varD~~~~~vta~~~ld 283 (478)
+++..+.....--.++|+.|+|
T Consensus 340 g~~~~~~~~~~~~~p~~v~~~~ 361 (361)
T 3scy_A 340 GLLTDIKKDIKVDKPVCLKFVD 361 (361)
T ss_dssp CCEEECSCCEECSSEEEEEEEC
T ss_pred CcEeecceeeeCCCCeEEEEcC
Confidence 9999887665444677777753
No 96
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.68 E-value=0.21 Score=47.50 Aligned_cols=109 Identities=9% Similarity=-0.021 Sum_probs=62.6
Q ss_pred CCceEEEeeeC---CceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEe
Q 011732 186 PGMVLAICPYL---DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 186 ~G~V~ai~~~~---g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~ 258 (478)
.+.|..++-.. +. ++++. ...|.+|++.. .+.+.. +......|.+|.. .+++++.|..-..+.++.
T Consensus 171 ~~~v~~~~~~~~~~~~-~~~s~~~d~~i~i~d~~~--~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd-- 243 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNP-IIVSCGWDKLVKVWNLAN--CKLKTN--HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD-- 243 (340)
T ss_dssp SSCEEEEEECSCSSSC-EEEEEETTSCEEEEETTT--TEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEE--
T ss_pred cCcccceEEccCCCCc-EEEEEcCCCEEEEEECCC--CceeeE--ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE--
Confidence 45555554322 23 33333 45689999876 222222 2122234666655 467899998888887754
Q ss_pred ccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 259 EDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 259 ~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
....+....-. ....++++.+-.++.++++-.++.|.++....
T Consensus 244 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 244 LNEGKHLYTLD--GGDIINALCFSPNRYWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp TTTTEEEEEEE--CSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred eccCceeeeec--CCceEEeeecCCCCceeeccCCCEEEEEECCC
Confidence 33333222111 23456777776666777777789999988643
No 97
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.16 Score=57.38 Aligned_cols=196 Identities=14% Similarity=0.161 Sum_probs=121.9
Q ss_pred EeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCC
Q 011732 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG 91 (478)
Q Consensus 12 i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g 91 (478)
......+..++|+|+.+.+++++. -..|+++|..+.+.+.. ++....+.+++... ++ +|+.|..
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~-------Dg~I~lw~~~~~~~~~~--~~~~~~V~~l~fsp--g~-~L~S~s~---- 77 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATV-------TGEVHIYGQQQVEVVIK--LEDRSAIKEMRFVK--GI-YLVVINA---- 77 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEET-------TSEEEEECSTTCEEEEE--CSSCCCEEEEEEET--TT-EEEEEET----
T ss_pred cCCCCCcEEEEECCCCCEEEEEeC-------CCEEEEEeCCCcEEEEE--cCCCCCEEEEEEcC--CC-EEEEEEC----
Confidence 344567899999999998888763 25799999888776543 44455677766554 33 7776643
Q ss_pred CCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccc
Q 011732 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (478)
.|.|.+|++.. |
T Consensus 78 ------------D~~v~lWd~~~---------------------------------------------------~----- 89 (902)
T 2oaj_A 78 ------------KDTVYVLSLYS---------------------------------------------------Q----- 89 (902)
T ss_dssp ------------TCEEEEEETTT---------------------------------------------------C-----
T ss_pred ------------cCeEEEEECCC---------------------------------------------------C-----
Confidence 47899998862 0
Q ss_pred cccceEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeee----------cccceeEEEEEEe
Q 011732 172 TETWQLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAV----------GRTRFMIMLLTAH 239 (478)
Q Consensus 172 ~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~----------~~~~~~i~sL~~~ 239 (478)
+ .++.....+.|++++--. +.+|++|. ...|.+|++... + +..... ......|.+|...
T Consensus 90 ----~--~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~--~-~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 90 ----K--VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD--Q-LSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp ----S--EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT--E-EEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred ----c--EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC--c-cccceeccccccccccccCCCCeEEEEEc
Confidence 1 122224668899988554 56566665 556999999752 2 221110 0112246666665
Q ss_pred C---CEEEEeecCCcEEEEEEeccCceEEEEecCC-----------------CCceeEEEEee-cCCeEEEeCCCCcEEE
Q 011732 240 F---TRIAVGDCRDGILFYSYHEDARKLEQIYCDP-----------------SQRLVADCVLM-DVDTAVVSDRKGSIAV 298 (478)
Q Consensus 240 ~---n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~-----------------~~~~vta~~~l-d~~~~l~aD~~gNl~v 298 (478)
. +.+++|..-..+ + |+...++....-... ....|+++.|- |...++.+..+|.|.+
T Consensus 161 p~~~~~l~~g~~dg~v-l--Wd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 161 PRDIGTVLISYEYVTL-T--YSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp TTEEEEEEEECSSCEE-E--EETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred cCCCCEEEEEeCCCcE-E--EECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 3 477777655555 5 555444433222111 12468888875 4447888899999999
Q ss_pred EecCC
Q 011732 299 LSCSD 303 (478)
Q Consensus 299 l~~~~ 303 (478)
++...
T Consensus 238 Wd~~~ 242 (902)
T 2oaj_A 238 WDANS 242 (902)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 98743
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.62 E-value=0.079 Score=51.79 Aligned_cols=172 Identities=13% Similarity=0.023 Sum_probs=89.4
Q ss_pred CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCc---EEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCC
Q 011732 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS---VLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSG 91 (478)
Q Consensus 15 ~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~---~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g 91 (478)
......++++|+.+.+++++. -..|+++|..+.+ .+..+.-+....+.|++.- .+..+|+.|+.
T Consensus 100 ~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~~~~~---- 166 (377)
T 3dwl_C 100 NRAATFVRWSPNEDKFAVGSG-------ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH--PNNVLLAAGCA---- 166 (377)
T ss_dssp SSCEEEEECCTTSSCCEEEES-------SSCEEECCC-----CCCCEEECSSCCSCEEEEEEC--TTSSEEEEEES----
T ss_pred CCceEEEEECCCCCEEEEEec-------CCeEEEEEECCcccceeeeEeecccCCCeEEEEEc--CCCCEEEEEeC----
Confidence 336778888998887777653 2468898887765 3444443234556555432 24578887754
Q ss_pred CCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccc
Q 011732 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (478)
.|.|.+|++..... + .-++ +. ..|.++
T Consensus 167 ------------d~~i~iwd~~~~~~-~-------------------------~~~~----------~~---~~~~~~-- 193 (377)
T 3dwl_C 167 ------------DRKAYVLSAYVRDV-D-------------------------AKPE----------AS---VWGSRL-- 193 (377)
T ss_dssp ------------SSCEEEEEECCSSC-C--------------------------CCC----------SC---SSCSCC--
T ss_pred ------------CCEEEEEEEEeccc-C-------------------------CCcc----------cc---cccccc--
Confidence 47899999963110 0 0000 00 011111
Q ss_pred cccceEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcc--cceeeeecccceeEEEEEE--eCCEEEE
Q 011732 172 TETWQLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQ--RVRRFAVGRTRFMIMLLTA--HFTRIAV 245 (478)
Q Consensus 172 ~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~--~L~~~a~~~~~~~i~sL~~--~~n~Ilv 245 (478)
..-+++......++|++++--. |++|+.+. ...|++|++...... .+...... ...+.++.. .+.+|+.
T Consensus 194 ---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 194 ---PFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAA 268 (377)
T ss_dssp ---CEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEE
T ss_pred ---chhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEE
Confidence 1123344346778999988654 55466554 557999999863110 02222222 223555544 3455555
Q ss_pred eecCCcEEEEEEe
Q 011732 246 GDCRDGILFYSYH 258 (478)
Q Consensus 246 gD~~~Sv~ll~y~ 258 (478)
| ..+++.++...
T Consensus 269 ~-~~~~~~~~~~~ 280 (377)
T 3dwl_C 269 G-YNYSPILLQGN 280 (377)
T ss_dssp E-SSSSEEEECCC
T ss_pred E-cCCcEEEEEeC
Confidence 5 46666665443
No 99
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.018 Score=57.09 Aligned_cols=211 Identities=12% Similarity=0.177 Sum_probs=116.8
Q ss_pred EeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCC----CcEEEEEECCCCCceEEEEEEEECCeeEEEEeee
Q 011732 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS----GSVLSSFKLELGETGKSMELVRVGHEQVLVVGTS 87 (478)
Q Consensus 12 i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t----~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~ 87 (478)
+......+.++++|+.+.+++++. ...|+++|..+ .+.+..+.- ....+.|++.. -.+..+|+.|..
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~-------dg~v~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~l~s~~~ 134 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALD-------NGSLELYSTNEANNAINSMARFSN-HSSSVKTVKFN-AKQDNVLASGGN 134 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEES-------SSCEEEECCSSTTSCCCEEEECCC-SSSCCCEEEEC-SSSTTBEEEECS
T ss_pred EecCCceEEEEECCCCCeEEEEcc-------CCeEEEeecccccccccchhhccC-CccceEEEEEc-CCCCCEEEEEcC
Confidence 334456788999999988877653 24799999877 334433321 22345554331 112467777743
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCc
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI 167 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (478)
.|.|.+|++...+. .+..
T Consensus 135 ----------------dg~v~iwd~~~~~~----------------------------------------~~~~------ 152 (416)
T 2pm9_A 135 ----------------NGEIFIWDMNKCTE----------------------------------------SPSN------ 152 (416)
T ss_dssp ----------------SSCEEBCBTTTTSS----------------------------------------CTTT------
T ss_pred ----------------CCeEEEEECCCCcc----------------------------------------cccc------
Confidence 47788988863100 0000
Q ss_pred cccccccceEEEEEEEecCCceEEEeeeCC--ceEEEE-eCCeEEEEeeCCCCcccceeeeeccc----ceeEEEEEEeC
Q 011732 168 KLEETETWQLRLAYSTTWPGMVLAICPYLD--RYFLAS-AGNAFYVCGFPNDNPQRVRRFAVGRT----RFMIMLLTAHF 240 (478)
Q Consensus 168 ~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g--~~Ll~a-vg~~l~v~~l~~~~~~~L~~~a~~~~----~~~i~sL~~~~ 240 (478)
. ..+.+.......++|++++-..+ .+|+.+ ....|.+|++... +.+........ ...+.++....
T Consensus 153 -----~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 153 -----Y-TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK--KEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp -----C-CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT--EEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred -----c-cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC--CcceEEeccccccccCCceEEEEECC
Confidence 0 00000011234577888876653 534443 3456999999762 22222221100 34567776653
Q ss_pred ---CEEEEeecCC---cEEEEEEeccCceEEEEecCCCCceeEEEEee--cCCeEEEeCCCCcEEEEecC
Q 011732 241 ---TRIAVGDCRD---GILFYSYHEDARKLEQIYCDPSQRLVADCVLM--DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 241 ---n~IlvgD~~~---Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l--d~~~~l~aD~~gNl~vl~~~ 302 (478)
.++++|..-. .|.++..+.....+..+ .......++++.+- +...++.+..+|.+.+++..
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTL-NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC-CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe-ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence 4777776665 77776544321211111 11345667888875 45578888999999999864
No 100
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.54 E-value=0.48 Score=45.72 Aligned_cols=167 Identities=13% Similarity=0.046 Sum_probs=100.0
Q ss_pred eeEEEeCCCC--cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEe
Q 011732 8 NVRKFHLGGT--PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVG 85 (478)
Q Consensus 8 ~ir~i~L~~t--p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VG 85 (478)
.++++|++.. |+-+.|+|+. .+.+++... ..+.|+.+|+.|++++..+.++....+..+... ++ .+.+.
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~----~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~-~lyv~ 81 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAEND-TLFESTGLY----GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NE-KLYQV 81 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTT-EEEEEECST----TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TT-EEEEE
T ss_pred EEEEEECCCCCCcccEEEeCCC-eEEEECCCC----CCCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CC-EEEEE
Confidence 4789999974 7899999984 444443321 258999999999999999999887666655443 33 34444
Q ss_pred eecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcC
Q 011732 86 TSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCD 165 (478)
Q Consensus 86 T~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (478)
|- ..|++.+++..
T Consensus 82 t~---------------~~~~v~viD~~---------------------------------------------------- 94 (266)
T 2iwa_A 82 VW---------------LKNIGFIYDRR---------------------------------------------------- 94 (266)
T ss_dssp ET---------------TCSEEEEEETT----------------------------------------------------
T ss_pred Ee---------------cCCEEEEEECC----------------------------------------------------
Confidence 43 25677776654
Q ss_pred CccccccccceEEEEEEEecC-CceEEEeeeCCceEEEEeC-CeEEEEeeCCCCcccceeeeeccc--ce-eEEEEEEeC
Q 011732 166 GIKLEETETWQLRLAYSTTWP-GMVLAICPYLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRT--RF-MIMLLTAHF 240 (478)
Q Consensus 166 g~~~~~~~~~~l~l~~~~~~~-G~V~ai~~~~g~~Ll~avg-~~l~v~~l~~~~~~~L~~~a~~~~--~~-~i~sL~~~~ 240 (478)
.++++.+.+.. +.-..++.-.++ |+++-| ++|++++... .+.++.+..... +. ....|...+
T Consensus 95 ----------t~~v~~~i~~g~~~g~glt~Dg~~-l~vs~gs~~l~viD~~t--~~v~~~I~Vg~~~~p~~~~nele~~d 161 (266)
T 2iwa_A 95 ----------TLSNIKNFTHQMKDGWGLATDGKI-LYGSDGTSILYEIDPHT--FKLIKKHNVKYNGHRVIRLNELEYIN 161 (266)
T ss_dssp ----------TTEEEEEEECCSSSCCEEEECSSS-EEEECSSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEET
T ss_pred ----------CCcEEEEEECCCCCeEEEEECCCE-EEEECCCCeEEEEECCC--CcEEEEEEECCCCcccccceeEEEEC
Confidence 12334444444 444556664445 777765 4467776643 222333222211 11 244555557
Q ss_pred CEEEEeecCCcEEEEEEeccCceE
Q 011732 241 TRIAVGDCRDGILFYSYHEDARKL 264 (478)
Q Consensus 241 n~IlvgD~~~Sv~ll~y~~~~~~L 264 (478)
+++++...... .+...++..++.
T Consensus 162 g~lyvn~~~~~-~V~vID~~tg~V 184 (266)
T 2iwa_A 162 GEVWANIWQTD-CIARISAKDGTL 184 (266)
T ss_dssp TEEEEEETTSS-EEEEEETTTCCE
T ss_pred CEEEEecCCCC-eEEEEECCCCcE
Confidence 78888775543 455556766544
No 101
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.53 E-value=0.59 Score=44.56 Aligned_cols=203 Identities=10% Similarity=0.118 Sum_probs=121.8
Q ss_pred eeEEEeCCC-CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEee
Q 011732 8 NVRKFHLGG-TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGT 86 (478)
Q Consensus 8 ~ir~i~L~~-tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT 86 (478)
.++.+.... ..+.+.|+|+.+.++.+.. -..|+++|..+++.+..++-.. ..+.|++.- .+.++|+.|.
T Consensus 47 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-------d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~--~~~~~l~sgs 116 (304)
T 2ynn_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSD-------DFRIRVFNYNTGEKVVDFEAHP-DYIRSIAVH--PTKPYVLSGS 116 (304)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEET-------TSEEEEEETTTCCEEEEEECCS-SCEEEEEEC--SSSSEEEEEE
T ss_pred eeEEeeccCCcEEEEEEeCCCCEEEEECC-------CCEEEEEECCCCcEEEEEeCCC-CcEEEEEEc--CCCCEEEEEC
Confidence 455666554 4677888998888777653 2579999999999887765432 345554331 2457777664
Q ss_pred ecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCC
Q 011732 87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG 166 (478)
Q Consensus 87 ~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 166 (478)
. -|.|.+|++...
T Consensus 117 ~----------------D~~v~lWd~~~~--------------------------------------------------- 129 (304)
T 2ynn_A 117 D----------------DLTVKLWNWENN--------------------------------------------------- 129 (304)
T ss_dssp T----------------TSCEEEEEGGGT---------------------------------------------------
T ss_pred C----------------CCeEEEEECCCC---------------------------------------------------
Confidence 3 478899988620
Q ss_pred ccccccccceEEEEEEEecCCceEEEeeeC--CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE----e
Q 011732 167 IKLEETETWQLRLAYSTTWPGMVLAICPYL--DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA----H 239 (478)
Q Consensus 167 ~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~--g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~----~ 239 (478)
..+... -....++|++++-.. +.+|+.+. ..+|.+|++..... ...... .....+..+.. .
T Consensus 130 --------~~~~~~-~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 130 --------WALEQT-FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTT-GQERGVNYVDYYPLPD 197 (304)
T ss_dssp --------TEEEEE-ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--SEEEEC-CCTTCEEEEEECCSTT
T ss_pred --------cchhhh-hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--cceecc-CCcCcEEEEEEEEcCC
Confidence 122111 124568899888653 45344443 66799999975321 111111 11112333333 2
Q ss_pred CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEecC
Q 011732 240 FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 240 ~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~ 302 (478)
+.+++.|..-..|.++. ...++....- ..+...++++.+-. ...++.+..+|.|.+++..
T Consensus 198 ~~~l~s~s~D~~i~iWd--~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 198 KPYMITASDDLTIKIWD--YQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp CCEEEEEETTSEEEEEE--TTTTEEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEcCCCeEEEEe--CCCCccceee-CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 46888888888887754 3444333222 12345677777653 3478888999999999864
No 102
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.53 E-value=0.62 Score=44.81 Aligned_cols=190 Identities=13% Similarity=0.062 Sum_probs=109.4
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~~~ 95 (478)
....++++|+.+.++.+.. -..|+++|..+++.+..+.-.. ..+.|+. +. +..+|+.|..
T Consensus 67 ~v~~~~~s~dg~~l~s~s~-------D~~v~~wd~~~~~~~~~~~~h~-~~v~~~~---~~~~~~~l~s~s~-------- 127 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASW-------DKTLRLWDVATGETYQRFVGHK-SDVMSVD---IDKKASMIISGSR-------- 127 (319)
T ss_dssp CEEEEEECTTSSEEEEEET-------TSEEEEEETTTTEEEEEEECCS-SCEEEEE---ECTTSCEEEEEET--------
T ss_pred cEEEEEECCCCCEEEEEeC-------CCEEEEEECCCCCeeEEEccCC-CcEEEEE---EcCCCCEEEEEeC--------
Confidence 4566788888877666543 2589999999998877665322 2344443 33 4467777644
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
-|.|.+|++.. .
T Consensus 128 --------D~~i~vwd~~~------------------------------------------------------------~ 139 (319)
T 3frx_A 128 --------DKTIKVWTIKG------------------------------------------------------------Q 139 (319)
T ss_dssp --------TSCEEEEETTS------------------------------------------------------------C
T ss_pred --------CCeEEEEECCC------------------------------------------------------------C
Confidence 46788888751 0
Q ss_pred eEEEEEEEecCCceEEEeeeC-------CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEE
Q 011732 176 QLRLAYSTTWPGMVLAICPYL-------DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAV 245 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~-------g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~Ilv 245 (478)
.+. .-....+.|.++.... +.+|+.+. ...|.+|++... + +.. .+......|.++.. .+.+|+.
T Consensus 140 ~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~-~~~-~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 140 CLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF--Q-IEA-DFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp EEE--EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT--E-EEE-EECCCCSCEEEEEECTTSSEEEE
T ss_pred eEE--EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc--h-hhe-eecCCCCcEEEEEEcCCCCEEEE
Confidence 111 1123456677666543 23244443 556999999751 2 211 22222334555554 4678988
Q ss_pred eecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 246 GDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 246 gD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
|..-..|.++. ....+....-. ....+.++.|-.++.++++-....+.++..+.
T Consensus 214 ~~~dg~i~iwd--~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~ 267 (319)
T 3frx_A 214 AGKDGEIMLWN--LAAKKAMYTLS--AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP 267 (319)
T ss_dssp EETTCEEEEEE--TTTTEEEEEEE--CCSCEEEEEECSSSSEEEEEETTEEEEEEETT
T ss_pred EeCCCeEEEEE--CCCCcEEEEec--CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCc
Confidence 88888887754 33333322211 12357777776555444444455688887654
No 103
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.48 E-value=0.3 Score=46.38 Aligned_cols=112 Identities=6% Similarity=-0.007 Sum_probs=64.7
Q ss_pred ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCEEEEeecCCcEEEEEEecc
Q 011732 184 TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHED 260 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~IlvgD~~~Sv~ll~y~~~ 260 (478)
...++|++|+--. |.+|+.+. ...|.+|++... +.+ ..+..+..+.++... +++++++..-.+|.++ +.+
T Consensus 213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--~~~---~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iw--d~~ 285 (340)
T 4aow_A 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--KHL---YTLDGGDIINALCFSPNRYWLCAATGPSIKIW--DLE 285 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEE---EEEECSSCEEEEEECSSSSEEEEEETTEEEEE--ETT
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--cee---eeecCCceEEeeecCCCCceeeccCCCEEEEE--ECC
Confidence 3578999987554 56455443 467999998762 222 223334455555544 3344455445555554 333
Q ss_pred CceEEE--------EecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 261 ARKLEQ--------IYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 261 ~~~L~~--------varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
...+.. ......+..|+++.+- |...++.+..+|.|.+++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp TTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 332222 1223456678888875 34477888999999999864
No 104
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.39 E-value=0.44 Score=46.44 Aligned_cols=192 Identities=11% Similarity=0.086 Sum_probs=107.5
Q ss_pred eCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCC
Q 011732 13 HLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGP 92 (478)
Q Consensus 13 ~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~ 92 (478)
+|+.+|+.|+++. .++|++.. ....|.++|+.|++.+.++. ....+..+++- -++ .+.|....
T Consensus 41 ~lg~~~~~i~~~~-~~lyv~~~-------~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~-~~g--~lyv~~~~---- 103 (328)
T 3dsm_A 41 KLGDVAQSMVIRD-GIGWIVVN-------NSHVIFAIDINTFKEVGRIT--GFTSPRYIHFL-SDE--KAYVTQIW---- 103 (328)
T ss_dssp CCBSCEEEEEEET-TEEEEEEG-------GGTEEEEEETTTCCEEEEEE--CCSSEEEEEEE-ETT--EEEEEEBS----
T ss_pred ccCccceEEEEEC-CEEEEEEc-------CCCEEEEEECcccEEEEEcC--CCCCCcEEEEe-CCC--eEEEEECC----
Confidence 6788899998854 45555542 13589999999999988874 34556555431 233 45555432
Q ss_pred CCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccc
Q 011732 93 AIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEET 172 (478)
Q Consensus 93 ~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 172 (478)
.|+|.+|+...
T Consensus 104 -----------~~~v~~iD~~t---------------------------------------------------------- 114 (328)
T 3dsm_A 104 -----------DYRIFIINPKT---------------------------------------------------------- 114 (328)
T ss_dssp -----------CSEEEEEETTT----------------------------------------------------------
T ss_pred -----------CCeEEEEECCC----------------------------------------------------------
Confidence 46777776541
Q ss_pred ccceEEEEEEEecCC------ceEEEeeeCCceEEEEe---CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCE
Q 011732 173 ETWQLRLAYSTTWPG------MVLAICPYLDRYFLASA---GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTR 242 (478)
Q Consensus 173 ~~~~l~l~~~~~~~G------~V~ai~~~~g~~Ll~av---g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~ 242 (478)
.+ +....++.. .+..|+.-.++ |.++. +++|.++++... +.+..+.. ......|... +++
T Consensus 115 --~~--~~~~i~~g~~~~~~~~p~~i~~~~~~-lyv~~~~~~~~v~viD~~t~--~~~~~i~~---g~~p~~i~~~~dG~ 184 (328)
T 3dsm_A 115 --YE--ITGYIECPDMDMESGSTEQMVQYGKY-VYVNCWSYQNRILKIDTETD--KVVDELTI---GIQPTSLVMDKYNK 184 (328)
T ss_dssp --TE--EEEEEECTTCCTTTCBCCCEEEETTE-EEEEECTTCCEEEEEETTTT--EEEEEEEC---SSCBCCCEECTTSE
T ss_pred --Ce--EEEEEEcCCccccCCCcceEEEECCE-EEEEcCCCCCEEEEEECCCC--eEEEEEEc---CCCccceEEcCCCC
Confidence 11 112222222 33444444455 77763 577999988752 22222222 2223334433 467
Q ss_pred EEEeecCC---------cEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 243 IAVGDCRD---------GILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 243 IlvgD~~~---------Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
+++++.-. +-.++.++...+++...-.=+...+...+.+- |.+.+.+++. .++++...
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~ 252 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE 252 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence 88887654 34677788877776532211111244555543 3557777776 77776653
No 105
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.35 E-value=0.13 Score=51.00 Aligned_cols=116 Identities=5% Similarity=0.046 Sum_probs=70.0
Q ss_pred ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecc----c---ceeEEEEEEeCCEEEEeecCCcEEE
Q 011732 184 TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGR----T---RFMIMLLTAHFTRIAVGDCRDGILF 254 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~----~---~~~i~sL~~~~n~IlvgD~~~Sv~l 254 (478)
...++|.+|+-.. |.+|+.+. ..+|.+|++... +.+....... . ..........+.++++|..-..+.+
T Consensus 247 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v 324 (380)
T 3iz6_a 247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG--HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV 324 (380)
T ss_dssp CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT--EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE
T ss_pred CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC--cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEE
Confidence 3578899988665 45344443 456999999762 2122111100 0 1223344456889999988888877
Q ss_pred EEEeccCceEE-EEec--CCCCceeEEEEee-cCCeEEEeCCCCcEEEEecCC
Q 011732 255 YSYHEDARKLE-QIYC--DPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 255 l~y~~~~~~L~-~var--D~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~~ 303 (478)
+ +....+.. .+.. ..+...++++.+- |...++.+..+|.+.++.+..
T Consensus 325 w--d~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 325 W--DTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp E--ETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred E--ECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 5 44333333 3322 3345567788774 445788889999999998753
No 106
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.35 E-value=0.83 Score=49.16 Aligned_cols=194 Identities=8% Similarity=0.039 Sum_probs=110.8
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
..+.++++|+.+.++.++. -..|+++|..+++.+..+.-. ...+.|++.- .+..+|+.|..
T Consensus 432 ~v~~v~~s~~g~~l~sgs~-------Dg~v~vwd~~~~~~~~~~~~h-~~~v~~~~~s--~~~~~l~s~s~--------- 492 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSW-------DGELRLWDLAAGVSTRRFVGH-TKDVLSVAFS--LDNRQIVSASR--------- 492 (694)
T ss_dssp CEEEEEECTTSSEEEEEET-------TSEEEEEETTTTEEEEEEECC-SSCEEEEEEC--TTSSCEEEEET---------
T ss_pred cEEEEEECCCCCEEEEEeC-------CCcEEEEECCCCcceeEEeCC-CCCEEEEEEe--CCCCEEEEEeC---------
Confidence 5677888888887766543 258999999998877665422 2234444321 24466666643
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
-|.|.+|++... .+
T Consensus 493 -------D~~i~iwd~~~~-----------------------------------------------------------~~ 506 (694)
T 3dm0_A 493 -------DRTIKLWNTLGE-----------------------------------------------------------CK 506 (694)
T ss_dssp -------TSCEEEECTTSC-----------------------------------------------------------EE
T ss_pred -------CCEEEEEECCCC-----------------------------------------------------------cc
Confidence 467788875310 01
Q ss_pred EEEEEE-EecCCceEEEeeeCC---ceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecC
Q 011732 177 LRLAYS-TTWPGMVLAICPYLD---RYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCR 249 (478)
Q Consensus 177 l~l~~~-~~~~G~V~ai~~~~g---~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~ 249 (478)
..+... ....+.|.+++-..+ .+|+.+. ...|.+|++.. .+ +.. .+......|.++.. .+++|+.|..-
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~--~~-~~~-~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN--CK-LRS-TLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--CC-EEE-EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC--Cc-EEE-EEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 111000 123456777765432 3244443 56799999976 22 221 12122234555555 46889999888
Q ss_pred CcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 250 DGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 250 ~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
..|.++.. ..++....-. ....+.++.+-.++.++++-.+++|.+++...
T Consensus 583 g~i~iwd~--~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~ 632 (694)
T 3dm0_A 583 GVVLLWDL--AEGKKLYSLE--ANSVIHALCFSPNRYWLCAATEHGIKIWDLES 632 (694)
T ss_dssp SBCEEEET--TTTEEEECCB--CSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred CeEEEEEC--CCCceEEEec--CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCC
Confidence 88888643 3333322211 23356677776556666666677799888753
No 107
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.35 E-value=0.86 Score=44.46 Aligned_cols=155 Identities=16% Similarity=0.090 Sum_probs=92.1
Q ss_pred CCCcCEEEEecC-CCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCC--CceEEEEEEEECCeeEEEEeeecCCC
Q 011732 15 GGTPKKVLYHSE-SRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG--ETGKSMELVRVGHEQVLVVGTSLSSG 91 (478)
Q Consensus 15 ~~tp~ki~y~~~-~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~--E~~~s~~~~~l~~~~~l~VGT~~~~g 91 (478)
......++++|. .+.++.++. -..|+++|..+ +.+..+.-... ..+.|++.- .+..+|++|+.
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~-------d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~---- 183 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSI-------RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVS--VSRQMLATGDS---- 183 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEET-------TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEE--TTTTEEEEEET----
T ss_pred CCceeEEEeCCCCCCEEEEEeC-------CCEEEEEECCC-CceEEEeccCCCCCCeEEEEEC--CCCCEEEEECC----
Confidence 346778888884 444444432 25799999886 44444443332 445555432 34578887754
Q ss_pred CCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccc
Q 011732 92 PAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEE 171 (478)
Q Consensus 92 ~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 171 (478)
.|.|.+|++..
T Consensus 184 ------------d~~i~i~d~~~--------------------------------------------------------- 194 (383)
T 3ei3_B 184 ------------TGRLLLLGLDG--------------------------------------------------------- 194 (383)
T ss_dssp ------------TSEEEEEETTS---------------------------------------------------------
T ss_pred ------------CCCEEEEECCC---------------------------------------------------------
Confidence 47899998741
Q ss_pred cccceEEEEEEEecCCceEEEeeeCC-c-eEEEEe-CCeEEEEeeCCCCc-ccceeeeecccceeEEEEEE---eCCEEE
Q 011732 172 TETWQLRLAYSTTWPGMVLAICPYLD-R-YFLASA-GNAFYVCGFPNDNP-QRVRRFAVGRTRFMIMLLTA---HFTRIA 244 (478)
Q Consensus 172 ~~~~~l~l~~~~~~~G~V~ai~~~~g-~-~Ll~av-g~~l~v~~l~~~~~-~~L~~~a~~~~~~~i~sL~~---~~n~Il 244 (478)
..+..+ ....++|.+++-..+ . +|+.+. ...|.+|++..... ..+. ........+.++.. .+++|+
T Consensus 195 ---~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 195 ---HEIFKE--KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI--AEMPHEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp ---CEEEEE--ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE--EEEECSSCEEEEEECTTTSCEEE
T ss_pred ---CEEEEe--ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE--EEecCCCceEEEEEcCCCCCEEE
Confidence 011111 246788999886654 3 355444 55799999985211 1121 11223445666665 458999
Q ss_pred EeecCCcEEEEEEec
Q 011732 245 VGDCRDGILFYSYHE 259 (478)
Q Consensus 245 vgD~~~Sv~ll~y~~ 259 (478)
+|..-..+.++..+.
T Consensus 268 ~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEESSSEEEEEETTB
T ss_pred EEcCCCcEEEEECCC
Confidence 998888888876543
No 108
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.35 E-value=0.69 Score=43.34 Aligned_cols=193 Identities=13% Similarity=0.068 Sum_probs=107.2
Q ss_pred EEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCC-CceEEEEEEEECCeeEEEEeeecCCCCCCCCCC
Q 011732 20 KVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG-ETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSG 98 (478)
Q Consensus 20 ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~-E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~ 98 (478)
-|.|++. ++++|++ -.+|+++|..|++.+..+++... ..+.|++.- .+.++++.|..
T Consensus 30 ~l~WS~~-~~lAvg~--------D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~--~~~~~l~sgs~----------- 87 (318)
T 4ggc_A 30 LVDWSSG-NVLAVAL--------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI--KEGNYLAVGTS----------- 87 (318)
T ss_dssp CEEECTT-SEEEEEE--------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC--TTSSEEEEEET-----------
T ss_pred EEEECCC-CEEEEEe--------CCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC--CCCCEEEEEEC-----------
Confidence 3567665 4666653 14799999999999998888754 456665432 34578888854
Q ss_pred CCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEE
Q 011732 99 EAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLR 178 (478)
Q Consensus 99 e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 178 (478)
-|.|.+|++... ..+.
T Consensus 88 -----Dg~v~iw~~~~~-----------------------------------------------------------~~~~ 103 (318)
T 4ggc_A 88 -----SAEVQLWDVQQQ-----------------------------------------------------------KRLR 103 (318)
T ss_dssp -----TSEEEEEETTTT-----------------------------------------------------------EEEE
T ss_pred -----CCcEEEeecCCc-----------------------------------------------------------eeEE
Confidence 478889987620 0111
Q ss_pred EEEEEecCCceEEEeeeCCceEEEEeCC-eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEE
Q 011732 179 LAYSTTWPGMVLAICPYLDRYFLASAGN-AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSY 257 (478)
Q Consensus 179 l~~~~~~~G~V~ai~~~~g~~Ll~avg~-~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y 257 (478)
. -....+.+.++... +.+|+.+... .+.++..... ...+..................+++++.|..-..+.++..
T Consensus 104 ~--~~~h~~~~~~~~~~-~~~l~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 104 N--MTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp E--EECCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred E--ecCccceEEEeecC-CCEEEEEecCCceEeeecCCC-ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 1 12345667776655 5535555433 3555555432 1112222222223333344445788999988888888654
Q ss_pred eccCceE-EEEecCCCCceeEEEEeecCC-e---EEEeCCCCcEEEEecC
Q 011732 258 HEDARKL-EQIYCDPSQRLVADCVLMDVD-T---AVVSDRKGSIAVLSCS 302 (478)
Q Consensus 258 ~~~~~~L-~~varD~~~~~vta~~~ld~~-~---~l~aD~~gNl~vl~~~ 302 (478)
....... ...........+.++.+...+ . +..++.++.+.++...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~ 229 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 229 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence 3322111 111222333455666655332 2 2345677888887653
No 109
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.32 E-value=0.34 Score=46.22 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=58.9
Q ss_pred eeEEEeCCC--CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCC--CceEEEEEEEEC-CeeEE
Q 011732 8 NVRKFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG--ETGKSMELVRVG-HEQVL 82 (478)
Q Consensus 8 ~ir~i~L~~--tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~--E~~~s~~~~~l~-~~~~l 82 (478)
.+++++++. .|+.++++|+.+.+++... ....|.++|..+++.+..+.+... +.......+.+. +..++
T Consensus 33 ~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 106 (349)
T 1jmx_B 33 VYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV 106 (349)
T ss_dssp EEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEE
T ss_pred EEEEEecCCCCCCceeEECCCCCEEEEEeC------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEE
Confidence 456788888 8999999999986666642 135799999999998888877542 111111122333 34567
Q ss_pred EEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 83 VVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 83 ~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
+++...... +.++.....|+|++|++.
T Consensus 107 ~~~~~~~~~----~~~~~~~~~~~i~~~d~~ 133 (349)
T 1jmx_B 107 YATVNPTQR----LNDHYVVKPPRLEVFSTA 133 (349)
T ss_dssp EEEEEEEEE----CSSCEEECCCEEEEEEGG
T ss_pred EEEcccccc----cccccccCCCeEEEEECC
Confidence 766642110 011111224789999886
No 110
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.051 Score=53.70 Aligned_cols=113 Identities=9% Similarity=0.045 Sum_probs=70.1
Q ss_pred CCceEEEeeeCC--ceEEEEeCC----eEEEEeeCCCCcccceeeeecccceeEEEEEE---eCCEEEEeecCCcEEEEE
Q 011732 186 PGMVLAICPYLD--RYFLASAGN----AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA---HFTRIAVGDCRDGILFYS 256 (478)
Q Consensus 186 ~G~V~ai~~~~g--~~Ll~avg~----~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~---~~n~IlvgD~~~Sv~ll~ 256 (478)
.++|++++-..+ .+|+++... .|++|++.... +.+.... ......+.++.. .+++++.|..-..|.++.
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 678888886653 445555544 89999998631 1122111 022345666665 467888888877777754
Q ss_pred EeccCceEE-EEecCCCCceeEEEEeecC--CeEEEeCCCCcEEEEecCCC
Q 011732 257 YHEDARKLE-QIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSCSDR 304 (478)
Q Consensus 257 y~~~~~~L~-~varD~~~~~vta~~~ld~--~~~l~aD~~gNl~vl~~~~~ 304 (478)
. ...+.. .+. ....+++++.+-.+ ..++.+..+|.+.+++....
T Consensus 292 ~--~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 292 P--ESAEQLSQFP--ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp S--SSCCEEEEEE--CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred C--CCCccceeec--CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 3 333332 222 23456777777543 47788888999999998653
No 111
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.28 E-value=0.42 Score=47.34 Aligned_cols=113 Identities=10% Similarity=0.053 Sum_probs=67.0
Q ss_pred cCCceEEEeee--CCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEec
Q 011732 185 WPGMVLAICPY--LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHE 259 (478)
Q Consensus 185 ~~G~V~ai~~~--~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~ 259 (478)
..+.|.++.-. ++.+|+.+. ..+|.+|+++... +.++... .....|.++.. .+++++.|..-..+.++. .
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd--~ 278 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYH--GHEGDINSVKFFPDGQRFGTGSDDGTCRLFD--M 278 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEEC--CCSSCCCEEEECTTSSEEEEECSSSCEEEEE--T
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEEC--CcCCCeEEEEEecCCCeEEEEcCCCeEEEEE--C
Confidence 35678877753 456444443 5679999997421 2122221 12223445544 467888888888887754 4
Q ss_pred cCceEE-EEecC-----CCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 260 DARKLE-QIYCD-----PSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 260 ~~~~L~-~varD-----~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
..++.. .+... .....++++.|- +...++++..+|.+.+++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 279 RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 333333 22221 222347777774 55578888999999999864
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.68 Score=44.84 Aligned_cols=178 Identities=10% Similarity=0.036 Sum_probs=92.7
Q ss_pred EEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccc
Q 011732 46 ICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTF 125 (478)
Q Consensus 46 l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~ 125 (478)
+.++|..+.+++..+.....+.+.|+..-...+..+++.|.. .|.|.+|++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----------------dg~i~~wd~~~----------- 158 (343)
T 3lrv_A 106 ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN----------------RGTIGFQSYED----------- 158 (343)
T ss_dssp EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET----------------TCCEEEEESSS-----------
T ss_pred eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC----------------CCcEEEEECCC-----------
Confidence 344466677777777777667777765532224467776753 57899999862
Q ss_pred cccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEEEEEecCCceEEEeeeC-CceEEEE-
Q 011732 126 CSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLAS- 203 (478)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~a- 203 (478)
.+...+.......+|.+++--. |.+|++|
T Consensus 159 -------------------------------------------------~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~ 189 (343)
T 3lrv_A 159 -------------------------------------------------DSQYIVHSAKSDVEYSSGVLHKDSLLLALYS 189 (343)
T ss_dssp -------------------------------------------------SCEEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred -------------------------------------------------CcEEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence 0122222233455788877554 4534443
Q ss_pred eCCeEEEEeeCCCCcccc-eeeeecccceeEEEEEEe--CCEEEEeecCCcEEEEEEeccCc--eEEEEecCCCCceeEE
Q 011732 204 AGNAFYVCGFPNDNPQRV-RRFAVGRTRFMIMLLTAH--FTRIAVGDCRDGILFYSYHEDAR--KLEQIYCDPSQRLVAD 278 (478)
Q Consensus 204 vg~~l~v~~l~~~~~~~L-~~~a~~~~~~~i~sL~~~--~n~IlvgD~~~Sv~ll~y~~~~~--~L~~varD~~~~~vta 278 (478)
....|++|++... +.+ ..... .....|++|... +.+++.|. -..|.++..+.... .+..+.....+....+
T Consensus 190 ~dg~i~iwd~~~~--~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 190 PDGILDVYNLSSP--DQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp TTSCEEEEESSCT--TSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred CCCEEEEEECCCC--CCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceE
Confidence 3567999999862 212 22111 123456666654 66888887 44555544332211 1111000001111123
Q ss_pred EEeecCCeEEEe-CC-CCcEEEEecCC
Q 011732 279 CVLMDVDTAVVS-DR-KGSIAVLSCSD 303 (478)
Q Consensus 279 ~~~ld~~~~l~a-D~-~gNl~vl~~~~ 303 (478)
+.+-.++.++++ .. ++.+.++++..
T Consensus 266 ~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 444333344444 34 88899998853
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.22 E-value=1 Score=44.10 Aligned_cols=104 Identities=10% Similarity=0.038 Sum_probs=60.9
Q ss_pred ceEEEE---eCCeEEEEeeCCCCc----------cccee-ee-ecccceeEEEEEE--eCCEEEEeecCCc-EEEEEEec
Q 011732 198 RYFLAS---AGNAFYVCGFPNDNP----------QRVRR-FA-VGRTRFMIMLLTA--HFTRIAVGDCRDG-ILFYSYHE 259 (478)
Q Consensus 198 ~~Ll~a---vg~~l~v~~l~~~~~----------~~L~~-~a-~~~~~~~i~sL~~--~~n~IlvgD~~~S-v~ll~y~~ 259 (478)
.+|+++ ....|.+|++..... ..+.+ +. +....-.|.++.. .+++++.|..-.. |.++ +.
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw--d~ 225 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF--KT 225 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE--ET
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE--EC
Confidence 436664 234599999975210 00111 11 1122234555554 4678888888777 7775 44
Q ss_pred cCceEEEEec-CCCCceeEEEEeec-CCeEEEeCCCCcEEEEecCC
Q 011732 260 DARKLEQIYC-DPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 260 ~~~~L~~var-D~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~~ 303 (478)
..++....-+ ......++++.|-. ...++.+..++.+.+++...
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 4444443333 33667788888754 44677788899999999864
No 114
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.63 Score=52.43 Aligned_cols=111 Identities=10% Similarity=0.072 Sum_probs=71.7
Q ss_pred ecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEecc
Q 011732 184 TWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHED 260 (478)
Q Consensus 184 ~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~~ 260 (478)
...++|.+|+-..|++|+.+. .++|.+|++.. .+.+... ..+..|+++.. .++++++|+.-..|.++ +..
T Consensus 56 ~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~--~~~~~~~---~~~~~V~~v~~sp~g~~l~sgs~dg~V~lw--d~~ 128 (902)
T 2oaj_A 56 EDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYS--QKVLTTV---FVPGKITSIDTDASLDWMLIGLQNGSMIVY--DID 128 (902)
T ss_dssp SSCCCEEEEEEETTTEEEEEETTCEEEEEETTT--CSEEEEE---ECSSCEEEEECCTTCSEEEEEETTSCEEEE--ETT
T ss_pred CCCCCEEEEEEcCCCEEEEEECcCeEEEEECCC--CcEEEEE---cCCCCEEEEEECCCCCEEEEEcCCCcEEEE--ECC
Confidence 457899999877788555554 67799999976 2323332 22334555554 47899999998888775 444
Q ss_pred CceEEEEe--------c--CCCCceeEEEEeecC--CeEEEeCCCCcEEEEecC
Q 011732 261 ARKLEQIY--------C--DPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 261 ~~~L~~va--------r--D~~~~~vta~~~ld~--~~~l~aD~~gNl~vl~~~ 302 (478)
..++.... + ..+...|+++.+-.. ..++++..+|.+ +++..
T Consensus 129 ~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 129 RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT
T ss_pred CCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC
Confidence 45443211 1 123446778877532 478888889998 88764
No 115
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.20 E-value=0.5 Score=45.42 Aligned_cols=201 Identities=11% Similarity=0.108 Sum_probs=110.2
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCC-CceEEEEEEEECCeeEEEEeeecCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG-ETGKSMELVRVGHEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~-E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~ 95 (478)
..+.++++|+.+.++.+.. -..|+++|..+.+......|... ..+.+++...-.+..+|+.|..
T Consensus 15 ~V~~v~~s~~g~~lasgs~-------D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~-------- 79 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSS-------DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY-------- 79 (316)
T ss_dssp CEEEEEECGGGCEEEEEET-------TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET--------
T ss_pred eEEEeeEcCCCCEEEEEeC-------CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC--------
Confidence 5678999999887776643 24799999877653222334333 2344433211012356666633
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
-|.|.+|++...
T Consensus 80 --------D~~v~iWd~~~~------------------------------------------------------------ 91 (316)
T 3bg1_A 80 --------DRKVIIWREENG------------------------------------------------------------ 91 (316)
T ss_dssp --------TSCEEEECCSSS------------------------------------------------------------
T ss_pred --------CCEEEEEECCCC------------------------------------------------------------
Confidence 467888887520
Q ss_pred eEEEEEE-EecCCceEEEeeeC---CceEEEEe-CCeEEEEeeCCCCcccceeeeecc-cceeEEEEEEe----------
Q 011732 176 QLRLAYS-TTWPGMVLAICPYL---DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGR-TRFMIMLLTAH---------- 239 (478)
Q Consensus 176 ~l~l~~~-~~~~G~V~ai~~~~---g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~-~~~~i~sL~~~---------- 239 (478)
+.+.+.. ....++|.+|+-.. |.+|+.+. ...|.+|++..... +....... ....+.++...
T Consensus 92 ~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHTIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeeccccCCcceEEEccccCCccccc
Confidence 0011111 23567899888654 45354443 45699999875311 11001000 01112222111
Q ss_pred ---------CCEEEEeecCCcEEEEEEeccCceEEEE-ecCCCCceeEEEEeecC-----CeEEEeCCCCcEEEEecCC
Q 011732 240 ---------FTRIAVGDCRDGILFYSYHEDARKLEQI-YCDPSQRLVADCVLMDV-----DTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 240 ---------~n~IlvgD~~~Sv~ll~y~~~~~~L~~v-arD~~~~~vta~~~ld~-----~~~l~aD~~gNl~vl~~~~ 303 (478)
+.+++.|..-..|.++..+.. ..+..+ .-..+..+|.++.+-.+ ..++.+..+|.+.++....
T Consensus 170 ~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp -CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccCccccceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 357777877778888766422 222221 11234567888887432 4688889999999998653
No 116
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.18 E-value=2.6 Score=48.97 Aligned_cols=114 Identities=11% Similarity=0.174 Sum_probs=75.3
Q ss_pred ecCCceEEEeeeC-----CceEEEEe-----------CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEee
Q 011732 184 TWPGMVLAICPYL-----DRYFLASA-----------GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGD 247 (478)
Q Consensus 184 ~~~G~V~ai~~~~-----g~~Ll~av-----------g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD 247 (478)
+-+-.|.+|+... ..||++|. ..+|++|++.+ ..|+.+......-.+++|...++++++|
T Consensus 826 ~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~---~kL~lv~~~~v~g~v~al~~~~g~Lla~- 901 (1158)
T 3ei3_A 826 LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD---GKLQTVAEKEVKGAVYSMVEFNGKLLAS- 901 (1158)
T ss_dssp CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET---TEEEEEEEEEESSCEEEEEEETTEEEEE-
T ss_pred CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC---CEEEEEEEEEcCCcCEEEeeeCCEEEEE-
Confidence 3445677777542 35688886 23489999873 3477666666666799999999998887
Q ss_pred cCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
+=+.+.++.|... +.|..-++.+...-++.+.. ..+.++++|....+++++|.+
T Consensus 902 ig~~l~vy~l~~~-~~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 902 INSTVRLYEWTTE-KELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp ETTEEEEEEECTT-SCEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEET
T ss_pred cCCEEEEEECCCC-ceEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEc
Confidence 4478888888653 33442233332211222222 356999999999999999865
No 117
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.17 E-value=0.92 Score=43.02 Aligned_cols=105 Identities=7% Similarity=0.011 Sum_probs=63.3
Q ss_pred CceEEEEe-CCeEEEEeeCCCCcccceeeeecc-cceeEEEEEEeC-----CEEEEeecCCcEEEEEEeccCc--eEEEE
Q 011732 197 DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGR-TRFMIMLLTAHF-----TRIAVGDCRDGILFYSYHEDAR--KLEQI 267 (478)
Q Consensus 197 g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~-~~~~i~sL~~~~-----n~IlvgD~~~Sv~ll~y~~~~~--~L~~v 267 (478)
+++|+.|. ..+|++|++..... .......+. ..-.|.++.... ++++.|..-..|.++..+.... ....+
T Consensus 170 ~~~l~sgs~D~~v~lwd~~~~~~-~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~ 248 (297)
T 2pm7_B 170 SRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLL 248 (297)
T ss_dssp CCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES
T ss_pred cceEEEEcCCCcEEEEEEcCCCc-eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeee
Confidence 34455554 56799999975321 111112222 223566666543 5778888888898887654322 22233
Q ss_pred ecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 268 YCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 268 arD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
.....+.++.++.+- +...++.+..+|.+.+++.+
T Consensus 249 ~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 249 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 223446678888774 44577778889999999865
No 118
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.12 E-value=0.49 Score=54.35 Aligned_cols=65 Identities=8% Similarity=-0.004 Sum_probs=43.6
Q ss_pred EEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEecC
Q 011732 235 LLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 235 sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~ 302 (478)
.....++++++|+.-..+.++.+ ..+...... .....+++++.+-. ...++.+..+|.+.+++..
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~--~~~~~~~~~-~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNI--DSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEET--TTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred EEcCCCCEEEEEeCCCeEEEEEc--CCCceeeec-CCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 33345788888888888777554 344333322 24566788888764 4478888899999999854
No 119
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.04 E-value=1.1 Score=42.66 Aligned_cols=167 Identities=15% Similarity=0.066 Sum_probs=102.0
Q ss_pred eEEEeCCCC--cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEee
Q 011732 9 VRKFHLGGT--PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGT 86 (478)
Q Consensus 9 ir~i~L~~t--p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT 86 (478)
++.+|.... -.-+.|++ +.+.+++... ..|+|+.+|+.|++++.++.++..-....+... ++..++ .|
T Consensus 12 ~~~~phd~~~ftqGL~~~~--~~LyestG~~----g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~---~~~ly~-lt 81 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR--GHLYESTGET----GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW---RDRLIQ-LT 81 (243)
T ss_dssp EEEEECCTTCCEEEEEEET--TEEEEEECCT----TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEE-EE
T ss_pred EEEcCCCCccccccEEEEC--CEEEEECCCC----CCceEEEEECCCCCEEEEEeCCCCcceeEEEEe---CCEEEE-EE
Confidence 455666553 34677876 4555554322 368999999999999999999876555444443 333333 34
Q ss_pred ecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCC
Q 011732 87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG 166 (478)
Q Consensus 87 ~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 166 (478)
- ..|++++|+..
T Consensus 82 w---------------~~~~v~v~D~~----------------------------------------------------- 93 (243)
T 3mbr_X 82 W---------------RNHEGFVYDLA----------------------------------------------------- 93 (243)
T ss_dssp S---------------SSSEEEEEETT-----------------------------------------------------
T ss_pred e---------------eCCEEEEEECC-----------------------------------------------------
Confidence 3 25677777764
Q ss_pred ccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCCe-EEEEeeCCCCcccceeeeecccce---eEEEEEEeCCE
Q 011732 167 IKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGNA-FYVCGFPNDNPQRVRRFAVGRTRF---MIMLLTAHFTR 242 (478)
Q Consensus 167 ~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~-l~v~~l~~~~~~~L~~~a~~~~~~---~i~sL~~~~n~ 242 (478)
.++++.+.+..+.-.+++.-.++ |+++-|+. |++++... -+.++.+.....+. .+.-|...+++
T Consensus 94 ---------tl~~~~ti~~~~~Gwglt~dg~~-L~vSdgs~~l~~iDp~t--~~~~~~I~V~~~g~~~~~lNeLe~~~G~ 161 (243)
T 3mbr_X 94 ---------TLTPRARFRYPGEGWALTSDDSH-LYMSDGTAVIRKLDPDT--LQQVGSIKVTAGGRPLDNLNELEWVNGE 161 (243)
T ss_dssp ---------TTEEEEEEECSSCCCEEEECSSC-EEEECSSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEETTE
T ss_pred ---------cCcEEEEEeCCCCceEEeeCCCE-EEEECCCCeEEEEeCCC--CeEEEEEEEccCCcccccceeeEEeCCE
Confidence 23455556666655778876666 88887644 67766553 22233333322222 45667777899
Q ss_pred EEEeecCCcEEEEEEeccCceEEE
Q 011732 243 IAVGDCRDGILFYSYHEDARKLEQ 266 (478)
Q Consensus 243 IlvgD~~~Sv~ll~y~~~~~~L~~ 266 (478)
|++..-+.. .+.+.++..++.+.
T Consensus 162 lyanvw~s~-~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 162 LLANVWLTS-RIARIDPASGKVVA 184 (243)
T ss_dssp EEEEETTTT-EEEEECTTTCBEEE
T ss_pred EEEEECCCC-eEEEEECCCCCEEE
Confidence 998875544 45566776665443
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.03 E-value=0.71 Score=46.45 Aligned_cols=127 Identities=9% Similarity=0.020 Sum_probs=76.2
Q ss_pred ceEEEEEEEecCCceEEEeeeCC-ceEEEEe--CCeEEEEeeCCCC--------cccceeeeecccceeEEEEEEe--CC
Q 011732 175 WQLRLAYSTTWPGMVLAICPYLD-RYFLASA--GNAFYVCGFPNDN--------PQRVRRFAVGRTRFMIMLLTAH--FT 241 (478)
Q Consensus 175 ~~l~l~~~~~~~G~V~ai~~~~g-~~Ll~av--g~~l~v~~l~~~~--------~~~L~~~a~~~~~~~i~sL~~~--~n 241 (478)
.+++........++|++|+-... ..++++. ...|++|++.... .+.+...... ...+.+|... +.
T Consensus 117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~ 194 (430)
T 2xyi_A 117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH--QKEGYGLSWNPNLN 194 (430)
T ss_dssp -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC--SSCCCCEEECTTST
T ss_pred CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC--CCCeEEEEeCCCCC
Confidence 36777777888999999998874 3244444 3469999997510 0112221211 2234455443 44
Q ss_pred -EEEEeecCCcEEEEEEeccC---ceEEEEe-cCCCCceeEEEEeec--CCeEEEeCCCCcEEEEecCC
Q 011732 242 -RIAVGDCRDGILFYSYHEDA---RKLEQIY-CDPSQRLVADCVLMD--VDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 242 -~IlvgD~~~Sv~ll~y~~~~---~~L~~va-rD~~~~~vta~~~ld--~~~~l~aD~~gNl~vl~~~~ 303 (478)
++++|+.-..|.++...... ..+.... -......+.++.+-. ...++++..+|.|.+++...
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 89999988899887654411 1111111 113445577777753 33666778899999998754
No 121
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.93 E-value=0.064 Score=52.46 Aligned_cols=204 Identities=10% Similarity=0.021 Sum_probs=107.7
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCc-EEEEEECCC-CCceEEEEEEEECCeeEEEEeeecCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS-VLSSFKLEL-GETGKSMELVRVGHEQVLVVGTSLSSGPAI 94 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~-~i~~~~l~~-~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~ 94 (478)
....++++|+.+.++.+.. -..|+++|..+.+ ......+.. ...+.|++.- .+..+|++|+.
T Consensus 57 ~v~~~~~s~~~~~l~s~s~-------d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~------- 120 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQ-------DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS--PNEDKFAVGSG------- 120 (377)
T ss_dssp CEEEEEECTTTCCEEEEET-------TSSEEEC------CCCCEEECCCCSSCEEEEECC--TTSSCCEEEES-------
T ss_pred eEEEEEEeCCCCEEEEEeC-------CCeEEEEEcCCCCceeeeeEecccCCceEEEEEC--CCCCEEEEEec-------
Confidence 5678899998887776643 2468999987765 222233333 3344444321 24467777754
Q ss_pred CCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCcccccccc
Q 011732 95 MPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETET 174 (478)
Q Consensus 95 ~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 174 (478)
.|.|.+|++...+ .
T Consensus 121 ---------d~~i~iwd~~~~~---------------------------------------------------------~ 134 (377)
T 3dwl_C 121 ---------ARVISVCYFEQEN---------------------------------------------------------D 134 (377)
T ss_dssp ---------SSCEEECCC--------------------------------------------------------------
T ss_pred ---------CCeEEEEEECCcc---------------------------------------------------------c
Confidence 4678888887310 0
Q ss_pred ceEEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCC---c--------c--cceeeeecccceeEEEEEE-
Q 011732 175 WQLRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDN---P--------Q--RVRRFAVGRTRFMIMLLTA- 238 (478)
Q Consensus 175 ~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~---~--------~--~L~~~a~~~~~~~i~sL~~- 238 (478)
+.+.........++|++|+-.. +.+|+.+. ...|++|++.... . + .-..+..+.....|.++..
T Consensus 135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 214 (377)
T 3dwl_C 135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFS 214 (377)
T ss_dssp CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEEC
T ss_pred ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEEC
Confidence 0011111112678899988665 45455544 4569999985211 0 0 0011111122334666655
Q ss_pred -eCCEEEEeecCCcEEEEEEeccCceEEEE-ecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 239 -HFTRIAVGDCRDGILFYSYHEDARKLEQI-YCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 239 -~~n~IlvgD~~~Sv~ll~y~~~~~~L~~v-arD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
.+++|+.|..-..|.++...........+ .-......++++.+-.++.+|++-.++++.+++..
T Consensus 215 p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 215 PSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp TTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 46789999888888887765433211111 11223446778887766666666667777788765
No 122
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=95.86 E-value=0.18 Score=50.32 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=45.3
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCC-CcEEEEEECCC------CCceEEEEEEEEC-Ce-eEEEEeee
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS-GSVLSSFKLEL------GETGKSMELVRVG-HE-QVLVVGTS 87 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t-~~~i~~~~l~~------~E~~~s~~~~~l~-~~-~~l~VGT~ 87 (478)
....++++|+.+.++.+ . -..|+++|..+ .+.+..+.+.+ ...+.|+ .+. +. .+|+.|+.
T Consensus 179 ~v~~~~~~~~~~~l~s~-~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-D-------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA---EFHPNSCNTFVYSSS 247 (447)
T ss_dssp CCCEEEECTTSSEEEEE-C-------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE---EECSSCTTEEEEEET
T ss_pred ceEEEEEcCCCCEEEEe-C-------CCeEEEEECCCCCceeeeeecccccccccCcceEEE---EECCCCCcEEEEEeC
Confidence 68899999998877764 2 25799999874 44444443222 2234443 333 23 68888864
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
.|.|.+|++.
T Consensus 248 ----------------dg~i~iwd~~ 257 (447)
T 3dw8_B 248 ----------------KGTIRLCDMR 257 (447)
T ss_dssp ----------------TSCEEEEETT
T ss_pred ----------------CCeEEEEECc
Confidence 4789999986
No 123
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.80 E-value=0.073 Score=53.93 Aligned_cols=113 Identities=15% Similarity=0.182 Sum_probs=68.6
Q ss_pred ecCCceEEEeee--CCceEEEEe-CCeEEEEeeCCCCcccceeeeec-ccceeEEEEE--EeCCEEEEeecCCcEEEEEE
Q 011732 184 TWPGMVLAICPY--LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVG-RTRFMIMLLT--AHFTRIAVGDCRDGILFYSY 257 (478)
Q Consensus 184 ~~~G~V~ai~~~--~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~-~~~~~i~sL~--~~~n~IlvgD~~~Sv~ll~y 257 (478)
...++|++|+-. ++.+|+.|. ..+|.+|+++. +.++..... .....+.++. ..+++|++|+.-..|.++..
T Consensus 162 gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~ 238 (435)
T 4e54_B 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG---NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238 (435)
T ss_dssp SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS---CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC---CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence 467899999854 466454443 45699999975 223322221 2222344444 45789999999888888653
Q ss_pred eccCceEEEEecCCCCceeEEEEeec-CC-eEEEeCCCCcEEEEecCC
Q 011732 258 HEDARKLEQIYCDPSQRLVADCVLMD-VD-TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 258 ~~~~~~L~~varD~~~~~vta~~~ld-~~-~~l~aD~~gNl~vl~~~~ 303 (478)
....+..+ ..+...|+++.|-. .+ .++.+..+|.+.+++...
T Consensus 239 --~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~ 282 (435)
T 4e54_B 239 --DGKELWNL--RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282 (435)
T ss_dssp --SSCBCCCS--BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred --CcceeEEE--ecccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence 33322221 23355688888753 33 455678899999988643
No 124
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.71 E-value=1.4 Score=41.28 Aligned_cols=116 Identities=12% Similarity=-0.002 Sum_probs=68.6
Q ss_pred CCceEEEeee----CCceEEEEeCCeEEEEeeCCCCcccceeeeec-ccceeEEEEEEeC------CEEEEeecCCcEEE
Q 011732 186 PGMVLAICPY----LDRYFLASAGNAFYVCGFPNDNPQRVRRFAVG-RTRFMIMLLTAHF------TRIAVGDCRDGILF 254 (478)
Q Consensus 186 ~G~V~ai~~~----~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~-~~~~~i~sL~~~~------n~IlvgD~~~Sv~l 254 (478)
.+.|.+++-. .+.+|+++......+|....... +..+..+ .....|.++.... ++++.|..-..|.+
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK--LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC--EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc--eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 4556666643 35657777766655665554322 3222222 2234566776653 47888888888999
Q ss_pred EEEeccCc------------------------------------------eEEEEec-CCCCceeEEEEee-cCCeEEEe
Q 011732 255 YSYHEDAR------------------------------------------KLEQIYC-DPSQRLVADCVLM-DVDTAVVS 290 (478)
Q Consensus 255 l~y~~~~~------------------------------------------~L~~var-D~~~~~vta~~~l-d~~~~l~a 290 (478)
+..+.... ....+.. ......++++.+- +...++.+
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 87764210 1111111 1234567788775 44578888
Q ss_pred CCCCcEEEEecCC
Q 011732 291 DRKGSIAVLSCSD 303 (478)
Q Consensus 291 D~~gNl~vl~~~~ 303 (478)
..+|.|.+++.+.
T Consensus 325 ~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 325 GDDGKVRLWKATY 337 (351)
T ss_dssp ETTSCEEEEEECT
T ss_pred cCCCcEEEEecCc
Confidence 9999999999864
No 125
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.64 E-value=1.7 Score=41.78 Aligned_cols=168 Identities=15% Similarity=0.090 Sum_probs=97.9
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCC-CCc--EEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCCC
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPL-SGS--VLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPA 93 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~-t~~--~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~ 93 (478)
|+.++++|+.+ +++... . ...|.++|.. +++ .+..+.+..+..+..+ .+. +..++++...
T Consensus 143 ~~~~~~spdg~-l~v~~~--~----~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~---~~spdg~~l~v~~~------ 206 (347)
T 3hfq_A 143 IHYTDLTPDNR-LAVIDL--G----SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL---VFSPDGQYAFLAGE------ 206 (347)
T ss_dssp EEEEEECTTSC-EEEEET--T----TTEEEEEEECTTSCEEEEEEEECCTTCCEEEE---EECTTSSEEEEEET------
T ss_pred ceEEEECCCCc-EEEEeC--C----CCEEEEEEECCCCcEEEeeeEEcCCCCCCceE---EECCCCCEEEEEeC------
Confidence 56799999999 444322 1 2478888876 454 3345567677666553 333 3355555322
Q ss_pred CCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccc
Q 011732 94 IMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETE 173 (478)
Q Consensus 94 ~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (478)
..|++.+|++... .
T Consensus 207 ---------~~~~v~v~~~~~~--------------------------------------------~------------- 220 (347)
T 3hfq_A 207 ---------LSSQIASLKYDTQ--------------------------------------------T------------- 220 (347)
T ss_dssp ---------TTTEEEEEEEETT--------------------------------------------T-------------
T ss_pred ---------CCCEEEEEEecCC--------------------------------------------C-------------
Confidence 2478899988720 0
Q ss_pred cceEEEEEEEe-cC------CceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeeeccc-ceeEEE--EEEeC
Q 011732 174 TWQLRLAYSTT-WP------GMVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRT-RFMIML--LTAHF 240 (478)
Q Consensus 174 ~~~l~l~~~~~-~~------G~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~-~~~i~s--L~~~~ 240 (478)
.+++.+.... .. ..+.+++--. |++|+++. ++.|.+|++..+. .++.+..... ...+.. ++..+
T Consensus 221 -g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g--~~~~~~~~~~~~~~~~~~~~spdg 297 (347)
T 3hfq_A 221 -GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG--HLTLIQQISTEGDFPRDFDLDPTE 297 (347)
T ss_dssp -TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG--CEEEEEEEECSSSCCCEEEECTTS
T ss_pred -CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC--cEEEeEEEecCCCCcCeEEECCCC
Confidence 1333333222 11 2356665433 56565553 5779999997532 2444333322 112333 34457
Q ss_pred CEEEEeecC-CcEEEEEEeccCceEEEEecC
Q 011732 241 TRIAVGDCR-DGILFYSYHEDARKLEQIYCD 270 (478)
Q Consensus 241 n~IlvgD~~-~Sv~ll~y~~~~~~L~~varD 270 (478)
.+|++++.. ..+.++.++.+.+++..+...
T Consensus 298 ~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~~ 328 (347)
T 3hfq_A 298 AFVVVVNQNTDNATLYARDLTSGKLSLLQKD 328 (347)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred CEEEEEEcCCCcEEEEEEeCCCCeEEecccc
Confidence 789999876 688888888888888877653
No 126
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.59 E-value=1.7 Score=41.68 Aligned_cols=168 Identities=17% Similarity=0.097 Sum_probs=101.9
Q ss_pred eEEEeCCCCc--CEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEee
Q 011732 9 VRKFHLGGTP--KKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGT 86 (478)
Q Consensus 9 ir~i~L~~tp--~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT 86 (478)
++++|-...+ +-|.|+. +.+.+++... ..|+|+.+|+.|++++.+..+++.-....+... ++..++ .|
T Consensus 34 v~~~phd~~~ftqGL~~~~--~~LyestG~~----g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~---g~~ly~-lt 103 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYRN--GYFYESTGLN----GRSSIRKVDIESGKTLQQIELGKRYFGEGISDW---KDKIVG-LT 103 (262)
T ss_dssp EEEEECCTTCEEEEEEEET--TEEEEEEEET----TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE---TTEEEE-EE
T ss_pred EEEecCCCCcccceEEEEC--CEEEEECCCC----CCceEEEEECCCCcEEEEEecCCccceeEEEEe---CCEEEE-EE
Confidence 5778888877 8899983 4555665533 268999999999999999999865434333332 333333 33
Q ss_pred ecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCC
Q 011732 87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG 166 (478)
Q Consensus 87 ~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 166 (478)
- ..+++++|+..
T Consensus 104 w---------------~~~~v~v~D~~----------------------------------------------------- 115 (262)
T 3nol_A 104 W---------------KNGLGFVWNIR----------------------------------------------------- 115 (262)
T ss_dssp S---------------SSSEEEEEETT-----------------------------------------------------
T ss_pred e---------------eCCEEEEEECc-----------------------------------------------------
Confidence 3 25677777764
Q ss_pred ccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeCC-eEEEEeeCCCCcccceeeeeccc--c-eeEEEEEEeCCE
Q 011732 167 IKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAGN-AFYVCGFPNDNPQRVRRFAVGRT--R-FMIMLLTAHFTR 242 (478)
Q Consensus 167 ~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~-~l~v~~l~~~~~~~L~~~a~~~~--~-~~i~sL~~~~n~ 242 (478)
.++++.+.+..+--.+++.-.+. |+++-|+ +|++++... -+.+..+..... + ..+..|...+++
T Consensus 116 ---------t~~~~~ti~~~~eG~glt~dg~~-L~~SdGs~~i~~iDp~T--~~v~~~I~V~~~g~~~~~lNELe~~~G~ 183 (262)
T 3nol_A 116 ---------NLRQVRSFNYDGEGWGLTHNDQY-LIMSDGTPVLRFLDPES--LTPVRTITVTAHGEELPELNELEWVDGE 183 (262)
T ss_dssp ---------TCCEEEEEECSSCCCCEEECSSC-EEECCSSSEEEEECTTT--CSEEEEEECEETTEECCCEEEEEEETTE
T ss_pred ---------cCcEEEEEECCCCceEEecCCCE-EEEECCCCeEEEEcCCC--CeEEEEEEeccCCccccccceeEEECCE
Confidence 23344555555444566655455 8888754 366666553 222333332221 2 234456667889
Q ss_pred EEEeecCCcEEEEEEeccCceEEEE
Q 011732 243 IAVGDCRDGILFYSYHEDARKLEQI 267 (478)
Q Consensus 243 IlvgD~~~Sv~ll~y~~~~~~L~~v 267 (478)
|++..-+.. .+++.++..++....
T Consensus 184 lyan~w~~~-~I~vIDp~tG~V~~~ 207 (262)
T 3nol_A 184 IFANVWQTN-KIVRIDPETGKVTGI 207 (262)
T ss_dssp EEEEETTSS-EEEEECTTTCBEEEE
T ss_pred EEEEEccCC-eEEEEECCCCcEEEE
Confidence 998886554 466677777665544
No 127
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.55 E-value=1 Score=47.75 Aligned_cols=194 Identities=8% Similarity=0.032 Sum_probs=114.8
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEEC------CCCCceEEEEEEEEC-CeeEEEEeeecC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKL------ELGETGKSMELVRVG-HEQVLVVGTSLS 89 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l------~~~E~~~s~~~~~l~-~~~~l~VGT~~~ 89 (478)
..+.++|+|+.+.++.+..+ ..|+++|..+++.+..+.- .-...+.++ .+. +..+|+.|..
T Consensus 192 ~V~~v~fspdg~~las~s~D-------~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v---~~spdg~~l~s~s~-- 259 (611)
T 1nr0_A 192 FVHSVRYNPDGSLFASTGGD-------GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL---TWSPDGTKIASASA-- 259 (611)
T ss_dssp CEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE---EECTTSSEEEEEET--
T ss_pred ceEEEEECCCCCEEEEEECC-------CcEEEEECCCCcEeeeeccccccccccCCCEEEE---EECCCCCEEEEEeC--
Confidence 56788999998877766432 4799999988887766532 112334443 343 4467776643
Q ss_pred CCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccc
Q 011732 90 SGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKL 169 (478)
Q Consensus 90 ~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 169 (478)
-|.|.+|++...
T Consensus 260 --------------D~~v~lWd~~~~------------------------------------------------------ 271 (611)
T 1nr0_A 260 --------------DKTIKIWNVATL------------------------------------------------------ 271 (611)
T ss_dssp --------------TSEEEEEETTTT------------------------------------------------------
T ss_pred --------------CCeEEEEeCCCC------------------------------------------------------
Confidence 468889987520
Q ss_pred cccccceEEEEE-EEecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEE
Q 011732 170 EETETWQLRLAY-STTWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAV 245 (478)
Q Consensus 170 ~~~~~~~l~l~~-~~~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~Ilv 245 (478)
..+..+. .......+.++.. .+.+|+.+. ...+.+|+... .+.++. .....-.|.++.. .+.+|+.
T Consensus 272 -----~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~--~~~~~~--~~gh~~~v~~l~~spdg~~l~s 341 (611)
T 1nr0_A 272 -----KVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPEL--GSIDQV--RYGHNKAITALSSSADGKTLFS 341 (611)
T ss_dssp -----EEEEEEECCSSGGGCEEEEEE-CSSCEEEEETTCCEEEEETTT--TEEEEE--ECCCSSCEEEEEECTTSSEEEE
T ss_pred -----ceeeeecCCCCccceeEEEEE-cCCEEEEEeCCCcEEEEeCCC--CCcceE--EcCCCCCEEEEEEeCCCCEEEE
Confidence 0111110 0112223344433 455354443 56688988764 221221 1122224555554 4789999
Q ss_pred eecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 246 GDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 246 gD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
|..-..|.++ +...+....+-.+.+...++++.+-+++.++.+-.++.+.++...
T Consensus 342 ~s~D~~v~~W--d~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~ 396 (611)
T 1nr0_A 342 ADAEGHINSW--DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG 396 (611)
T ss_dssp EETTSCEEEE--ETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred EeCCCcEEEE--ECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecC
Confidence 9888888764 555555554444556777888888766777777788888887654
No 128
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.39 E-value=1.9 Score=40.82 Aligned_cols=212 Identities=12% Similarity=0.131 Sum_probs=115.1
Q ss_pred eeEEEeCCCCcCE-EEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEe
Q 011732 8 NVRKFHLGGTPKK-VLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVG 85 (478)
Q Consensus 8 ~ir~i~L~~tp~k-i~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VG 85 (478)
..+.+..+..|.. ++++|+.+.+++. .... ....|.++|..+++.+..+... ..+.++ .+. +..++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~---~~~~i~v~d~~~~~~~~~~~~~--~~~~~~---~~spdg~~l~~~ 145 (331)
T 3u4y_A 75 KVVAIQEGQSSMADVDITPDDQFAVTV-TGLN---HPFNMQSYSFLKNKFISTIPIP--YDAVGI---AISPNGNGLILI 145 (331)
T ss_dssp EEEEEEECSSCCCCEEECTTSSEEEEC-CCSS---SSCEEEEEETTTTEEEEEEECC--TTEEEE---EECTTSSCEEEE
T ss_pred eEEecccCCCCccceEECCCCCEEEEe-cCCC---CcccEEEEECCCCCeEEEEECC--CCccce---EECCCCCEEEEE
Confidence 3677888889999 9999999977732 2110 1238999999999988876653 444433 233 33445554
Q ss_pred eecCCCCCCCCCCCCcCcceE-EEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCc
Q 011732 86 TSLSSGPAIMPSGEAESTKGR-LIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASC 164 (478)
Q Consensus 86 T~~~~g~~~~~~~e~~~~~Gr-i~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (478)
... .++ +.+|++.. +
T Consensus 146 ~~~---------------~~~~i~~~~~~~---------------------------------------------~---- 161 (331)
T 3u4y_A 146 DRS---------------SANTVRRFKIDA---------------------------------------------D---- 161 (331)
T ss_dssp EET---------------TTTEEEEEEECT---------------------------------------------T----
T ss_pred ecC---------------CCceEEEEEECC---------------------------------------------C----
Confidence 331 345 88999862 0
Q ss_pred CCccccccccceEEEEEEEecCCceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--e
Q 011732 165 DGIKLEETETWQLRLAYSTTWPGMVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--H 239 (478)
Q Consensus 165 ~g~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~ 239 (478)
|. + .... .........+.+++--. |++|+++. +++|.+|++.. .+.++.+..+.....+..+.. .
T Consensus 162 -g~-~-----~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~--~~~~~~~~~~~~~~~~~~~~~spd 231 (331)
T 3u4y_A 162 -GV-L-----FDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN--PENITLLNAVGTNNLPGTIVVSRD 231 (331)
T ss_dssp -CC-E-----EEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS--TTSCEEEEEEECSSCCCCEEECTT
T ss_pred -Cc-E-----eecC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC--CcccceeeeccCCCCCceEEECCC
Confidence 10 0 0111 11123334456665443 55566654 56799999875 232122222223333334443 4
Q ss_pred CCEEEEeecCCcEEEEEEeccCceEEEEe-------cCCCCcee-EEEEee-cCCeE-EEeCCCCcEEEEecCC
Q 011732 240 FTRIAVGDCRDGILFYSYHEDARKLEQIY-------CDPSQRLV-ADCVLM-DVDTA-VVSDRKGSIAVLSCSD 303 (478)
Q Consensus 240 ~n~IlvgD~~~Sv~ll~y~~~~~~L~~va-------rD~~~~~v-ta~~~l-d~~~~-l~aD~~gNl~vl~~~~ 303 (478)
+.++++++....- +..|+...+++..+. .+..+... .++.+- |...+ +++...+.+.+++...
T Consensus 232 g~~l~v~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 232 GSTVYVLTESTVD-VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp SSEEEEECSSEEE-EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CCEEEEEEcCCCE-EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 6788888764432 444777767664332 12222222 223333 33344 3445566788888753
No 129
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.9 Score=48.72 Aligned_cols=194 Identities=15% Similarity=0.110 Sum_probs=115.5
Q ss_pred CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCC------ceEEEEEEEEC-CeeEEEEeee
Q 011732 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGE------TGKSMELVRVG-HEQVLVVGTS 87 (478)
Q Consensus 15 ~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E------~~~s~~~~~l~-~~~~l~VGT~ 87 (478)
......++++|+.+.++++.. .+.++++|..+ .+..+ + ++ .+.|+ .+. +.++|++|+.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~-------dg~V~iwd~~~--~l~~l--~-~~~~~~~~sv~sv---afSPDG~~LAsgs~ 149 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSN-------NGNVSVFKDNK--MLTNL--D-SKGNLSSRTYHCF---EWNPIESSIVVGNE 149 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEET-------TSCEEEEETTE--EEEEC--C-CSSCSTTTCEEEE---EECSSSSCEEEEET
T ss_pred CCcEEEEEECCCCCEEEEEeC-------CCcEEEEeCCc--eeeec--c-CCCccccccEEEE---EEcCCCCEEEEEcC
Confidence 346788999999999988863 34688998654 33333 3 33 24443 333 5689999855
Q ss_pred cCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCc
Q 011732 88 LSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGI 167 (478)
Q Consensus 88 ~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (478)
-|.|.+|++... +
T Consensus 150 ----------------DGtVkIWd~~~~---------------------------------------------------~ 162 (588)
T 2j04_A 150 ----------------DGELQFFSIRKN---------------------------------------------------S 162 (588)
T ss_dssp ----------------TSEEEEEECCCC---------------------------------------------------T
T ss_pred ----------------CCEEEEEECCCC---------------------------------------------------c
Confidence 578999998720 0
Q ss_pred cccccccceEEEEEEE-----ecCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCccc-ceeeeecccceeEEEEEEeC
Q 011732 168 KLEETETWQLRLAYST-----TWPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQR-VRRFAVGRTRFMIMLLTAHF 240 (478)
Q Consensus 168 ~~~~~~~~~l~l~~~~-----~~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~-L~~~a~~~~~~~i~sL~~~~ 240 (478)
+ ...++.++... ...+.|++|+-..++ |+++. ++.+++|++.....+. .+... ......|.++.-.+
T Consensus 163 -l---~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFsg 236 (588)
T 2j04_A 163 -E---NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIVD 236 (588)
T ss_dssp -T---TCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEET
T ss_pred -c---ccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEEC
Confidence 0 00122233332 234689999988888 65554 7779999997621110 01110 01223466665557
Q ss_pred CEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecC-C--eEEEeCCCCcEEEEec
Q 011732 241 TRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-D--TAVVSDRKGSIAVLSC 301 (478)
Q Consensus 241 n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~-~--~~l~aD~~gNl~vl~~ 301 (478)
+.|+++- .+.|.+ |+...+++...-.. +...+.++.+.+. + .++.++.+|- .++..
T Consensus 237 ~~LASa~-~~tIkL--Wd~~~~~~~~~~~g-h~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 237 YKVVLTC-PGYVHK--IDLKNYSISSLKTG-SLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp TEEEEEC-SSEEEE--EETTTTEEEEEECS-CCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred CEEEEEe-CCeEEE--EECCCCeEEEEEcC-CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 7887774 466666 55666666443322 5566777776332 2 5888888888 55554
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.35 E-value=2.1 Score=43.12 Aligned_cols=109 Identities=6% Similarity=-0.080 Sum_probs=59.4
Q ss_pred cCCceEEEeee-CCceEEEEeCC----eEEEEeeCCCCcccceeeeecccceeEEEEE--EeCCEEEEeecCCc-EEEEE
Q 011732 185 WPGMVLAICPY-LDRYFLASAGN----AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLT--AHFTRIAVGDCRDG-ILFYS 256 (478)
Q Consensus 185 ~~G~V~ai~~~-~g~~Ll~avg~----~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~--~~~n~IlvgD~~~S-v~ll~ 256 (478)
..+.+.++.-- .|++|+++.+. +|++|++.. .+ ++.+... ...+.++. ..+.+|+++....+ ..++.
T Consensus 265 ~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~--~~-~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~ 339 (415)
T 2hqs_A 265 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GA-PQRITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAK 339 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SC-CEECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC--CC-EEEEecC--CCcccCeEECCCCCEEEEEECcCCceEEEE
Confidence 34567766544 35657666642 577777654 22 3322221 22344444 45778887765543 56777
Q ss_pred EeccCceEEEEecCCCCceeEEEEeecC-CeEEEeCC-CC--cEEEEec
Q 011732 257 YHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSDR-KG--SIAVLSC 301 (478)
Q Consensus 257 y~~~~~~L~~varD~~~~~vta~~~ld~-~~~l~aD~-~g--Nl~vl~~ 301 (478)
|+...+++..+.... .+.+..+-.+ ..++.+.. .+ .|+++..
T Consensus 340 ~d~~~~~~~~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 340 QDLATGGVQVLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp EETTTCCEEECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred EECCCCCEEEecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 887777776655442 5666666433 34444433 33 5666654
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.27 E-value=3 Score=43.88 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=50.3
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeC--CCCcEEEEEECCCCCceEEEEEEEEC-----CeeE
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDP--LSGSVLSSFKLELGETGKSMELVRVG-----HEQV 81 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~--~t~~~i~~~~l~~~E~~~s~~~~~l~-----~~~~ 81 (478)
+++++.+..|+-++++|+.+.++++..+ ..|.++|. .|++++..+. .+..+.++. |. +..+
T Consensus 172 ~~~i~~g~~~~~v~~spdg~~l~v~~~d-------~~V~v~D~~~~t~~~~~~i~--~g~~p~~va---~sp~~~~dg~~ 239 (543)
T 1nir_A 172 VKVIDTGYAVHISRMSASGRYLLVIGRD-------ARIDMIDLWAKEPTKVAEIK--IGIEARSVE---SSKFKGYEDRY 239 (543)
T ss_dssp EEEEECSTTEEEEEECTTSCEEEEEETT-------SEEEEEETTSSSCEEEEEEE--CCSEEEEEE---ECCSTTCTTTE
T ss_pred EEEEecCcccceEEECCCCCEEEEECCC-------CeEEEEECcCCCCcEEEEEe--cCCCcceEE---eCCCcCCCCCE
Confidence 6788888889999999999988887531 57999999 8898887766 355555543 33 4467
Q ss_pred EEEeee
Q 011732 82 LVVGTS 87 (478)
Q Consensus 82 l~VGT~ 87 (478)
++|+..
T Consensus 240 l~v~~~ 245 (543)
T 1nir_A 240 TIAGAY 245 (543)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 777754
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.19 E-value=2 Score=45.19 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=41.7
Q ss_pred eeEEEeCCCCcCEEEEec----CCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECC
Q 011732 8 NVRKFHLGGTPKKVLYHS----ESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE 63 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~----~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~ 63 (478)
.+++++.+..|+.++++| +.+.++|+... ...|.++|..|++++..+...
T Consensus 214 ~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~------~~~v~v~D~~t~~~~~~i~~~ 267 (543)
T 1nir_A 214 KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPKQIVSTR 267 (543)
T ss_dssp EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEEEEEECC
T ss_pred EEEEEecCCCcceEEeCCCcCCCCCEEEEEEcc------CCeEEEEeccccccceeeccc
Confidence 467899999999999999 99988887542 357999999999999888763
No 133
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.89 E-value=1.6 Score=46.98 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=72.8
Q ss_pred EecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEe
Q 011732 183 TTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 183 ~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~ 258 (478)
....++|.+++-.. |++|+.+. ...|++|++.. .+.++. +....-.|.++.. .+++|+.|..-..|.++ +
T Consensus 427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~--~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw--d 500 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA--GVSTRR--FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW--N 500 (694)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEE--EECCSSCEEEEEECTTSSCEEEEETTSCEEEE--C
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--CcceeE--EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE--E
Confidence 35678999988654 56455444 56799999976 222222 2222334556654 46788899888888885 3
Q ss_pred ccCceEEEEec--CCCCceeEEEEeecC---CeEEEeCCCCcEEEEecC
Q 011732 259 EDARKLEQIYC--DPSQRLVADCVLMDV---DTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 259 ~~~~~L~~var--D~~~~~vta~~~ld~---~~~l~aD~~gNl~vl~~~ 302 (478)
........+.. ..+..+++++.+-.+ ..++.+..+|.+.+++..
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~ 549 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC
Confidence 33333333322 345667888887543 368888999999999874
No 134
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.72 E-value=3.8 Score=40.75 Aligned_cols=193 Identities=10% Similarity=0.041 Sum_probs=107.4
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMP 96 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~ 96 (478)
....|+|+|+.+.+++++. -..|+++|..+++.+..+.-.. ..+.|+.. +..+++.|..
T Consensus 149 ~V~sv~fspdg~~lasgs~-------Dg~v~iWd~~~~~~~~~~~~h~-~~v~~~s~----~~~~l~sgs~--------- 207 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTS-------SAEVQLWDVQQQKRLRNMTSHS-ARVGSLSW----NSYILSSGSR--------- 207 (420)
T ss_dssp CEEEEEECTTSSEEEEEET-------TSCEEEEETTTTEEEEEECCCS-SCEEEEEE----ETTEEEEEET---------
T ss_pred cEEEEEECCCCCEEEEEEC-------CCeEEEEEcCCCcEEEEEeCCC-CceEEEee----CCCEEEEEeC---------
Confidence 4788999999998887754 2479999999999887765332 33444332 2356666643
Q ss_pred CCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccce
Q 011732 97 SGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQ 176 (478)
Q Consensus 97 ~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 176 (478)
.|.+.+++.... . ..
T Consensus 208 -------d~~i~~~d~~~~--------------------------------------------~--------------~~ 222 (420)
T 4gga_A 208 -------SGHIHHHDVRVA--------------------------------------------E--------------HH 222 (420)
T ss_dssp -------TSEEEEEETTSS--------------------------------------------S--------------CE
T ss_pred -------CCceeEeeeccc--------------------------------------------c--------------ee
Confidence 456777766410 0 11
Q ss_pred EEEEEEEecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcc--cceeeeecccceeEEEEEEe---CCEEEEee--
Q 011732 177 LRLAYSTTWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQ--RVRRFAVGRTRFMIMLLTAH---FTRIAVGD-- 247 (478)
Q Consensus 177 l~l~~~~~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~--~L~~~a~~~~~~~i~sL~~~---~n~IlvgD-- 247 (478)
+.. -....+.+..+.... |.+|+.+. .+.+.+|+....... .+.. .......|..+... ++.+++|.
T Consensus 223 ~~~--~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~--~~~~~~~V~~~~~~p~~~~~la~~~gs 298 (420)
T 4gga_A 223 VAT--LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT--FTQHQGAVKAVAWCPWQSNVLATGGGT 298 (420)
T ss_dssp EEE--EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE--ECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred eEE--ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee--ecccCCceeeeeeCCCcccEEEEEeec
Confidence 111 123456677666554 55444444 456899988752211 1221 22223345555543 45665543
Q ss_pred cCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEe--CCCCcEEEEecCC
Q 011732 248 CRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVS--DRKGSIAVLSCSD 303 (478)
Q Consensus 248 ~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~a--D~~gNl~vl~~~~ 303 (478)
.-+.|.+ |+...++....-. ....++++.+. +.+.++.+ ..+|.|.+++++.
T Consensus 299 ~D~~I~i--wd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 299 SDRHIRI--WNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp TTCEEEE--EETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred CCCEEEE--EeCCccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 2345555 5555554443322 23345566554 44455443 4789999998753
No 135
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=94.58 E-value=2.2 Score=41.71 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=55.2
Q ss_pred CCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCc
Q 011732 196 LDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQR 274 (478)
Q Consensus 196 ~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~ 274 (478)
++. |.++. +..|+.++... .+.+-.. ..+ ....+.+.++.|++++....+.. |+...+++.--.......
T Consensus 239 ~~~-v~~~~~~g~l~~~d~~t--G~~~w~~---~~~-~~~~~~~~~~~l~~~~~~g~l~~--~d~~tG~~~w~~~~~~~~ 309 (376)
T 3q7m_A 239 NGV-VFALAYNGNLTALDLRS--GQIMWKR---ELG-SVNDFIVDGNRIYLVDQNDRVMA--LTIDGGVTLWTQSDLLHR 309 (376)
T ss_dssp TTE-EEEECTTSCEEEEETTT--CCEEEEE---CCC-CEEEEEEETTEEEEEETTCCEEE--EETTTCCEEEEECTTTTS
T ss_pred CCE-EEEEecCcEEEEEECCC--CcEEeec---cCC-CCCCceEECCEEEEEcCCCeEEE--EECCCCcEEEeecccCCC
Confidence 344 66654 56688777754 2212111 111 23456677999999987666554 566566554322212222
Q ss_pred eeEEEEeecCCeEEEeCCCCcEEEEecC
Q 011732 275 LVADCVLMDVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 275 ~vta~~~ld~~~~l~aD~~gNl~vl~~~ 302 (478)
...+. .+.++.+++++.+|.|+.++..
T Consensus 310 ~~~~~-~~~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 310 LLTSP-VLYNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp CCCCC-EEETTEEEEECTTSEEEEEETT
T ss_pred cccCC-EEECCEEEEEeCCCeEEEEECC
Confidence 22222 2356688888999999999853
No 136
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=94.39 E-value=3 Score=40.18 Aligned_cols=163 Identities=11% Similarity=0.045 Sum_probs=96.5
Q ss_pred eEEEeCCCCc--CEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEee
Q 011732 9 VRKFHLGGTP--KKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGT 86 (478)
Q Consensus 9 ir~i~L~~tp--~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT 86 (478)
++.+|....+ +-|.|+. +.+.+++... ..|+.+|++|++++.++ +++.-....+.. .++..+++ |
T Consensus 46 v~~~phd~~~ftqGL~~~~--~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~---~g~~Ly~l-t 112 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFHQ--GHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNIFAEGLAS---DGERLYQL-T 112 (268)
T ss_dssp EEEEECCTTCCEEEEEEET--TEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTCCEEEEEE---CSSCEEEE-E
T ss_pred EEEEcCCCccccceEEEEC--CEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCcceeEEEE---eCCEEEEE-E
Confidence 5677777766 7788874 5555554322 23999999999999998 776433333322 34443332 3
Q ss_pred ecCCCCCCCCCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCC
Q 011732 87 SLSSGPAIMPSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDG 166 (478)
Q Consensus 87 ~~~~g~~~~~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 166 (478)
- ..+++++|+..
T Consensus 113 w---------------~~~~v~V~D~~----------------------------------------------------- 124 (268)
T 3nok_A 113 W---------------TEGLLFTWSGM----------------------------------------------------- 124 (268)
T ss_dssp S---------------SSCEEEEEETT-----------------------------------------------------
T ss_pred c---------------cCCEEEEEECC-----------------------------------------------------
Confidence 3 25677777664
Q ss_pred ccccccccceEEEEEEEecCCceEEEeeeCCceEEEEeC-CeEEEEeeCCCCcccceeeeecccce---eEEEEEEeCCE
Q 011732 167 IKLEETETWQLRLAYSTTWPGMVLAICPYLDRYFLASAG-NAFYVCGFPNDNPQRVRRFAVGRTRF---MIMLLTAHFTR 242 (478)
Q Consensus 167 ~~~~~~~~~~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg-~~l~v~~l~~~~~~~L~~~a~~~~~~---~i~sL~~~~n~ 242 (478)
.++++.+.+..+.-.+++.-.++ |+++-| ++|++++... -+.++.+....-+. .+..|...+++
T Consensus 125 ---------Tl~~~~ti~~~~eGwGLt~Dg~~-L~vSdGs~~l~~iDp~T--~~v~~~I~V~~~g~~v~~lNeLe~~dG~ 192 (268)
T 3nok_A 125 ---------PPQRERTTRYSGEGWGLCYWNGK-LVRSDGGTMLTFHEPDG--FALVGAVQVKLRGQPVELINELECANGV 192 (268)
T ss_dssp ---------TTEEEEEEECSSCCCCEEEETTE-EEEECSSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEETTE
T ss_pred ---------cCcEEEEEeCCCceeEEecCCCE-EEEECCCCEEEEEcCCC--CeEEEEEEeCCCCcccccccccEEeCCE
Confidence 23445555555555677766555 888874 4467776553 23233333222222 34566777889
Q ss_pred EEEeecCCcEEEEEEeccCceEE
Q 011732 243 IAVGDCRDGILFYSYHEDARKLE 265 (478)
Q Consensus 243 IlvgD~~~Sv~ll~y~~~~~~L~ 265 (478)
|++..-... .+++.++..++.+
T Consensus 193 lyanvw~s~-~I~vIDp~TG~V~ 214 (268)
T 3nok_A 193 IYANIWHSS-DVLEIDPATGTVV 214 (268)
T ss_dssp EEEEETTCS-EEEEECTTTCBEE
T ss_pred EEEEECCCC-eEEEEeCCCCcEE
Confidence 998875544 4556677666544
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.33 E-value=3.6 Score=38.84 Aligned_cols=189 Identities=11% Similarity=0.056 Sum_probs=98.1
Q ss_pred EEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeeecCCCCCCCCCCCC
Q 011732 22 LYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTSLSSGPAIMPSGEA 100 (478)
Q Consensus 22 ~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~~~~g~~~~~~~e~ 100 (478)
+|.+..+.+.|... ....|.++|..+++.+..+.+. .+.+ ++ .+. +..++++...
T Consensus 4 ~~~~~~~~~~v~~~------~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~---~~s~dg~~l~~~~~------------- 59 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQ------HLRRISFFSTDTLEILNQITLG-YDFV-DT---AITSDCSNVVVTSD------------- 59 (331)
T ss_dssp ---CCCCEEEEEEG------GGTEEEEEETTTCCEEEEEECC-CCEE-EE---EECSSSCEEEEEES-------------
T ss_pred eEcCCCCEEEEEec------CCCeEEEEeCcccceeeeEEcc-CCcc-eE---EEcCCCCEEEEEeC-------------
Confidence 45666666555543 2358999999999998887755 3333 33 333 3345555433
Q ss_pred cCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccceEEEE
Q 011732 101 ESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETWQLRLA 180 (478)
Q Consensus 101 ~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~ 180 (478)
..|+|++|+... .++...
T Consensus 60 --~~~~i~~~d~~~------------------------------------------------------------~~~~~~ 77 (331)
T 3u4y_A 60 --FCQTLVQIETQL------------------------------------------------------------EPPKVV 77 (331)
T ss_dssp --TTCEEEEEECSS------------------------------------------------------------SSCEEE
T ss_pred --CCCeEEEEECCC------------------------------------------------------------CceeEE
Confidence 145888887751 011111
Q ss_pred EEEecCCceEEEeee-CCceEEEEeCC----eEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecC-Cc-
Q 011732 181 YSTTWPGMVLAICPY-LDRYFLASAGN----AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCR-DG- 251 (478)
Q Consensus 181 ~~~~~~G~V~ai~~~-~g~~Ll~avg~----~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~-~S- 251 (478)
......++..+++-- .|++|+++.+. .|.+|++.. .+.+... .....+..+.. .++++++++.. ..
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~--~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~ 152 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK--NKFISTI---PIPYDAVGIAISPNGNGLILIDRSSANT 152 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT--TEEEEEE---ECCTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC--CCeEEEE---ECCCCccceEECCCCCEEEEEecCCCce
Confidence 112234555524322 36656655555 799999875 2222222 22223345544 45678888776 56
Q ss_pred EEEEEEeccCceEEEEecC--CCCceeEEEEeecCC-eEEEeC-CCCcEEEEecC
Q 011732 252 ILFYSYHEDARKLEQIYCD--PSQRLVADCVLMDVD-TAVVSD-RKGSIAVLSCS 302 (478)
Q Consensus 252 v~ll~y~~~~~~L~~varD--~~~~~vta~~~ld~~-~~l~aD-~~gNl~vl~~~ 302 (478)
+.++.++.. +.+...... .......++.+-.++ .+++++ .++.+.+++..
T Consensus 153 i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 153 VRRFKIDAD-GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp EEEEEECTT-CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEECCC-CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 888777642 222211100 112233445543333 355554 57778888764
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.17 E-value=4.1 Score=38.92 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=69.8
Q ss_pred eEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeee--cccceeEEEEEE--eCCEEEEeec-CCcEEEEEEecc
Q 011732 189 VLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAV--GRTRFMIMLLTA--HFTRIAVGDC-RDGILFYSYHED 260 (478)
Q Consensus 189 V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~--~~~~~~i~sL~~--~~n~IlvgD~-~~Sv~ll~y~~~ 260 (478)
++++.--. |+ |+++. +.+|.+|++..+. .+..... ......+..+.. .++++++.+. -..+.++.++..
T Consensus 143 ~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g--~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 143 IHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAG--QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEEEECTTS--CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEECCCCc-EEEEeCCCCEEEEEEECCCC--cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 55555443 56 55553 4579999998432 2433221 111223334443 4677888665 456788888765
Q ss_pred CceEEEEec---CCCC----ceeEEEEeecCC-eEEEeC-CCCcEEEEecCCCcccCCCCCccceeeeeeec-CccccEE
Q 011732 261 ARKLEQIYC---DPSQ----RLVADCVLMDVD-TAVVSD-RKGSIAVLSCSDRLEDNASPECNLTPNCAYHM-GEIAVSI 330 (478)
Q Consensus 261 ~~~L~~var---D~~~----~~vta~~~ld~~-~~l~aD-~~gNl~vl~~~~~~~~s~~~~~~L~~~~~fhl-Gd~vt~~ 330 (478)
.+++..+.. -+.. .++.++.+-.++ .+++++ .++.+.+++.+.. + .+.....+.. |..+..+
T Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~------g--~~~~~~~~~~~~~~~~~~ 291 (347)
T 3hfq_A 220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD------G--HLTLIQQISTEGDFPRDF 291 (347)
T ss_dssp TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG------G--CEEEEEEEECSSSCCCEE
T ss_pred CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC------C--cEEEeEEEecCCCCcCeE
Confidence 666654432 1111 345566654333 343554 4788899987531 1 3444455444 4445544
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=94.06 E-value=3 Score=39.10 Aligned_cols=72 Identities=8% Similarity=0.036 Sum_probs=46.8
Q ss_pred eEEEeCCC------CcCEEEEecCCCeEEEEEEee--CCCc---ceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEEC
Q 011732 9 VRKFHLGG------TPKKVLYHSESRLLIVMRTEL--NNDT---CSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVG 77 (478)
Q Consensus 9 ir~i~L~~------tp~ki~y~~~~~~~~v~~~~~--~~~~---~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~ 77 (478)
+++++++. .|+.++++|+.+.++++.... .... ....|.++|..+++.+..+... ..+.++. +.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~---~s 143 (337)
T 1pby_B 69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLA---WA 143 (337)
T ss_dssp EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEE---EC
T ss_pred EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeE---EC
Confidence 45677766 899999999998777775321 1111 1378999999999888777653 3444433 33
Q ss_pred -CeeEEEEe
Q 011732 78 -HEQVLVVG 85 (478)
Q Consensus 78 -~~~~l~VG 85 (478)
+..+++++
T Consensus 144 ~dg~~l~~~ 152 (337)
T 1pby_B 144 RDGSKLYGL 152 (337)
T ss_dssp TTSSCEEEE
T ss_pred CCCCEEEEe
Confidence 33555555
No 140
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=94.04 E-value=3.8 Score=38.06 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=31.1
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE 63 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~ 63 (478)
....++++|+.+.++.++. -..|+++|..+++.+..+.-.
T Consensus 69 ~V~~v~~~~~~~~l~sgs~-------Dg~v~iw~~~~~~~~~~~~~h 108 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTS-------SAEVQLWDVQQQKRLRNMTSH 108 (318)
T ss_dssp CEEEEEECTTSSEEEEEET-------TSEEEEEETTTTEEEEEEECC
T ss_pred eEEEEEECCCCCEEEEEEC-------CCcEEEeecCCceeEEEecCc
Confidence 4678899999888777653 247999999999988776644
No 141
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.47 E-value=5.2 Score=38.14 Aligned_cols=80 Identities=16% Similarity=0.037 Sum_probs=46.8
Q ss_pred eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-EeecCC---cEEEEEEeccCceEEEEecCCCCceeEEEEee
Q 011732 207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VGDCRD---GILFYSYHEDARKLEQIYCDPSQRLVADCVLM 282 (478)
Q Consensus 207 ~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vgD~~~---Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l 282 (478)
.+++|+... ...+.++....+..-.+..+.+++|+ +|-... .-.+..|+.+.++-..++.-+.+|...++..+
T Consensus 166 ~~~~yd~~~---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 242 (315)
T 4asc_A 166 KMCVYDPKK---FEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL 242 (315)
T ss_dssp CEEEEETTT---TEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred eEEEEeCCC---CeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE
Confidence 477787765 22333332222223333445577665 554322 22467789989999999877778877666666
Q ss_pred cCCeEEE
Q 011732 283 DVDTAVV 289 (478)
Q Consensus 283 d~~~~l~ 289 (478)
++.-++.
T Consensus 243 ~~~l~v~ 249 (315)
T 4asc_A 243 VGTLYAI 249 (315)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 6653333
No 142
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=93.34 E-value=5.6 Score=37.68 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=45.1
Q ss_pred eEEEeCCC--CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEee
Q 011732 9 VRKFHLGG--TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGT 86 (478)
Q Consensus 9 ir~i~L~~--tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT 86 (478)
+.+++.+. .++.+...|+.+.++ +. ...|..+|+ +++.+..+..+....+.++. .+.+..++++.+
T Consensus 28 ~w~~~~~~~~~~~~~~~~pdG~ilv--s~-------~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~--~~~dG~~lv~~~ 95 (276)
T 3no2_A 28 VWEYPLEKGWECNSVAATKAGEILF--SY-------SKGAKMITR-DGRELWNIAAPAGCEMQTAR--ILPDGNALVAWC 95 (276)
T ss_dssp EEEEECCTTCCCCEEEECTTSCEEE--EC-------BSEEEEECT-TSCEEEEEECCTTCEEEEEE--ECTTSCEEEEEE
T ss_pred EEEeCCCccCCCcCeEECCCCCEEE--eC-------CCCEEEECC-CCCEEEEEcCCCCccccccE--ECCCCCEEEEec
Confidence 46677764 689999999999777 21 246999999 89999999986443444332 234445665543
No 143
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=93.15 E-value=6.7 Score=38.12 Aligned_cols=92 Identities=11% Similarity=0.154 Sum_probs=52.8
Q ss_pred ceEEEe-ee-CCceEEEEe-C-C-----eEEEEeeCCCCcccceeee-ecc---cceeEEEEEE---eCCEEEEeecC-C
Q 011732 188 MVLAIC-PY-LDRYFLASA-G-N-----AFYVCGFPNDNPQRVRRFA-VGR---TRFMIMLLTA---HFTRIAVGDCR-D 250 (478)
Q Consensus 188 ~V~ai~-~~-~g~~Ll~av-g-~-----~l~v~~l~~~~~~~L~~~a-~~~---~~~~i~sL~~---~~n~IlvgD~~-~ 250 (478)
.+.+++ -- .|++|+++. + + +|.+|++..+ .+ ++.+. ... .......++. .+++|++++.. .
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~-g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC-GS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT-SC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC-CC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence 356665 22 366666553 3 3 7999999743 22 44321 111 1112234455 58899999875 7
Q ss_pred cEEEEEEeccCceEEEEec--CCCCceeEEEEeec
Q 011732 251 GILFYSYHEDARKLEQIYC--DPSQRLVADCVLMD 283 (478)
Q Consensus 251 Sv~ll~y~~~~~~L~~var--D~~~~~vta~~~ld 283 (478)
.|.++.++.+ .|..+++ =+.|..+..+.++|
T Consensus 333 ~v~v~~~~~~--~l~~~~~~~~~~p~~~~~~~~~~ 365 (365)
T 1jof_A 333 WLEIYRWKDE--FLHRVARVRIPEPGFGMNAIWYD 365 (365)
T ss_dssp EEEEEEEETT--EEEEEEEEECCSTTEEEEEEEEC
T ss_pred eEEEEEEchh--hCceeeEEEcCCCcceeeeEecC
Confidence 8888887754 5665542 24466666766664
No 144
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=93.08 E-value=3.3 Score=43.46 Aligned_cols=114 Identities=6% Similarity=-0.045 Sum_probs=64.2
Q ss_pred cCCceEEEeeeCCceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--e--C-CEEEEeecCCcEEEEEEe
Q 011732 185 WPGMVLAICPYLDRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--H--F-TRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 185 ~~G~V~ai~~~~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~--~-n~IlvgD~~~Sv~ll~y~ 258 (478)
..++|++++-..+.+|++|. ..+|.+|++.... ..+.... ...-.|.+|.. . + ++++.|..-+.|.++..+
T Consensus 265 h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~-~~~~~~~--~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~ 341 (524)
T 2j04_B 265 ADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE-VPSFYDQ--VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK 341 (524)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS-SCSEEEE--CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred CCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC-CceEEee--cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence 45889998865665466665 4679999997521 1111111 22335777732 2 3 566777777777775432
Q ss_pred ccCceEEEEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEecC
Q 011732 259 EDARKLEQIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 259 ~~~~~L~~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~ 302 (478)
.........+.. ...++.++.+-. ...+++++.++.+.++...
T Consensus 342 ~~~~~~~~~~~~-~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~ 385 (524)
T 2j04_B 342 DIATTKTTVSRF-RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR 385 (524)
T ss_dssp GHHHHCEEEEEC-SCCSCCCEEEETTTTEEEEECSSSEEEEEETT
T ss_pred CCCccccccccc-ccCcccceEeCCCcCeEEEeCCCCcEEEEECc
Confidence 211111222221 112355566643 4478888889899888753
No 145
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=92.91 E-value=2.5 Score=44.47 Aligned_cols=112 Identities=7% Similarity=0.129 Sum_probs=63.1
Q ss_pred ecCCceEEEe-eeC--C-ceEEEEe--CCeEEEEeeCCCCcccceeee-ecc-cceeEEEEEEeCCEEEEeecCCcEEEE
Q 011732 184 TWPGMVLAIC-PYL--D-RYFLASA--GNAFYVCGFPNDNPQRVRRFA-VGR-TRFMIMLLTAHFTRIAVGDCRDGILFY 255 (478)
Q Consensus 184 ~~~G~V~ai~-~~~--g-~~Ll~av--g~~l~v~~l~~~~~~~L~~~a-~~~-~~~~i~sL~~~~n~IlvgD~~~Sv~ll 255 (478)
...++|++|+ .+. | . ++++. ..+|.+|+++.. +.+.... -.. .....+.....+..++.|+..+.|.++
T Consensus 306 ~H~~~V~sv~~~~s~~g~~-~laS~S~D~tvklWD~~~~--~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lw 382 (524)
T 2j04_B 306 VHDSYILSVSTAYSDFEDT-VVSTVAVDGYFYIFNPKDI--ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV 382 (524)
T ss_dssp CSSSCEEEEEEECCTTSCC-EEEEEETTSEEEEECGGGH--HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEE
T ss_pred cccccEEEEEEEcCCCCCe-EEEEeccCCeEEEEECCCC--CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEE
Confidence 4578999995 443 4 5 54443 567999999751 2122111 111 111223333346678888888888775
Q ss_pred EEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEec
Q 011732 256 SYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 256 ~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~ 301 (478)
..+.. ..+..+.. +..+|+++.|- +...++.+..+|.+.++..
T Consensus 383 d~~~~-~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 383 PSRAA-FAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp ETTCT-TCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred ECccc-ccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 43321 12122222 44577787774 3446777888998888764
No 146
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=92.88 E-value=5.2 Score=38.46 Aligned_cols=112 Identities=8% Similarity=0.046 Sum_probs=69.5
Q ss_pred ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEec
Q 011732 184 TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHE 259 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~ 259 (478)
...++|++++--. +.+|+.+. ..+|.+|++... +.+....- ....|.++.. .+++|+.|..-..|.++...
T Consensus 74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~~--h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~- 148 (343)
T 2xzm_R 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFVG--HQSEVYSVAFSPDNRQILSAGAEREIKLWNIL- 148 (343)
T ss_dssp CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEEC--CCSCEEEEEECSSTTEEEEEETTSCEEEEESS-
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEcC--CCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-
Confidence 4678899988654 45444443 567999999762 22333222 2234555554 57899999988888886543
Q ss_pred cCceEEEE-ecCCCCceeEEEEeecC-----------CeEEEeCCCCcEEEEec
Q 011732 260 DARKLEQI-YCDPSQRLVADCVLMDV-----------DTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 260 ~~~~L~~v-arD~~~~~vta~~~ld~-----------~~~l~aD~~gNl~vl~~ 301 (478)
....... .......++.++.+-.. ..++.+..+|.+.+++.
T Consensus 149 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 201 (343)
T 2xzm_R 149 -GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT 201 (343)
T ss_dssp -SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET
T ss_pred -CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC
Confidence 2222222 12245567777776432 35778888999999873
No 147
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=92.32 E-value=6.9 Score=36.17 Aligned_cols=108 Identities=8% Similarity=0.080 Sum_probs=57.4
Q ss_pred ceEEEeee-CCceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCEEEEeecCCcEEEEEEeccCce
Q 011732 188 MVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHEDARK 263 (478)
Q Consensus 188 ~V~ai~~~-~g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~IlvgD~~~Sv~ll~y~~~~~~ 263 (478)
.+.+|+-- +|+ |+++. +.+|++|+... +.+...........+..|... ++.|+|+|....- +..|+.....
T Consensus 122 ~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g---~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~g~~ 196 (286)
T 1q7f_A 122 HPRGVTVDNKGR-IIVVECKVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC-VKVFNYEGQY 196 (286)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECTTS---CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE-EEEEETTCCE
T ss_pred CceEEEEeCCCC-EEEEECCCCEEEEEcCCC---CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE-EEEEcCCCCE
Confidence 45566544 355 66664 46688887543 323332211111235566654 3578899875432 3445666566
Q ss_pred EEEEecCCCCceeEEEEeecCCeEEEeCCCC--cEEEEe
Q 011732 264 LEQIYCDPSQRLVADCVLMDVDTAVVSDRKG--SIAVLS 300 (478)
Q Consensus 264 L~~varD~~~~~vta~~~ld~~~~l~aD~~g--Nl~vl~ 300 (478)
+..+..+-...+..++.+-.++.++++|... .|.++.
T Consensus 197 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 197 LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 6666544322345555543344666777643 566665
No 148
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=92.06 E-value=8.7 Score=36.72 Aligned_cols=118 Identities=7% Similarity=0.020 Sum_probs=68.1
Q ss_pred ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeec-ccceeEEEEEE--eCCEEEEeecCCcEEEEEEe
Q 011732 184 TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVG-RTRFMIMLLTA--HFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~-~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~ 258 (478)
...++|++|+--. |.+|+.|. ..+|++|++.... +..+.+..+ .....|.++.. .+++|+.|..-..|.++...
T Consensus 105 ~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~-~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~ 183 (330)
T 2hes_X 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG-EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183 (330)
T ss_dssp ----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC-CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC-CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 3568899988554 56455554 5679999995421 112222212 22234666654 46889999888899887654
Q ss_pred ccCceEEEEecCCCCceeEEEEeecC--C-eEEEeCCCCcEEEEecCC
Q 011732 259 EDARKLEQIYCDPSQRLVADCVLMDV--D-TAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 259 ~~~~~L~~varD~~~~~vta~~~ld~--~-~~l~aD~~gNl~vl~~~~ 303 (478)
....+....- ..+..+|.++.|-.+ . .++.+..++.+.+++...
T Consensus 184 ~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 184 DDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp TTEEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred CCCeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 3221222211 234456777776533 2 567778899999998753
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=91.96 E-value=8.2 Score=36.25 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=33.0
Q ss_pred eEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 44 SDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
..|.++|..+++.+..+.++....+.+++. . .+..++++... ..|.|++|++.
T Consensus 21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-s-~dg~~~~v~~~---------------~~~~i~~~d~~ 73 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMM-A-PDNRTAYVLNN---------------HYGDIYGIDLD 73 (349)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSSCEEEE-C-TTSSEEEEEET---------------TTTEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCceeEE-C-CCCCEEEEEeC---------------CCCcEEEEeCC
Confidence 589999999999998888765223333322 1 23345544432 14678888765
No 150
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=91.94 E-value=12 Score=37.92 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=41.3
Q ss_pred eeEEEeCCC--------CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCC
Q 011732 8 NVRKFHLGG--------TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLEL 64 (478)
Q Consensus 8 ~ir~i~L~~--------tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~ 64 (478)
.+++|+++. .|+.++++|+.+.+.|.... ....|-+||..|++++.++.++.
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-----~~~~VsVID~~t~~vv~tI~v~g 180 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-----PAPAVGVVDLEGKAFKRMLDVPD 180 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-----SSCEEEEEETTTTEEEEEEECCS
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-----CCCeEEEEECCCCcEEEEEECCC
Confidence 367787753 79999999999987776421 13589999999999999998764
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=91.83 E-value=1.8 Score=44.06 Aligned_cols=85 Identities=14% Similarity=0.028 Sum_probs=54.0
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCC--------cEEEEEECCC--CCceEEEEEEEECC
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSG--------SVLSSFKLEL--GETGKSMELVRVGH 78 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~--------~~i~~~~l~~--~E~~~s~~~~~l~~ 78 (478)
..+++++..++.++++|+.+.++|++..- ..-..|+++|..++ +.+..+.... ...+.+++. .-.+
T Consensus 86 ~~~~~~~~~v~~l~~spdg~~lav~~~sg---s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-~p~~ 161 (434)
T 2oit_A 86 GLLVPMKFPIHHLALSCDNLTLSACMMSS---EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKW-NPTV 161 (434)
T ss_dssp CEEECCSSCEEEEEECTTSCEEEEEEEET---TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEE-CSSC
T ss_pred cccccCCCcccEEEEcCCCCEEEEEEecc---CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEE-CCCC
Confidence 35678888899999999999988864211 13468999997554 3333333332 234554432 1122
Q ss_pred eeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 79 EQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 79 ~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
..+|+.|+. -|.|.+|++.
T Consensus 162 ~~~las~s~----------------Dg~v~iwD~~ 180 (434)
T 2oit_A 162 PSMVAVCLA----------------DGSIAVLQVT 180 (434)
T ss_dssp TTEEEEEET----------------TSCEEEEEES
T ss_pred CCEEEEEEC----------------CCeEEEEEcC
Confidence 467777754 4789999997
No 152
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=91.81 E-value=9.9 Score=36.88 Aligned_cols=127 Identities=9% Similarity=-0.012 Sum_probs=68.7
Q ss_pred CceEEEeee-CCceEEEEe--CCeEEEEeeCCCCcccce----eeeecccc----e-------eEEEEE---EeCCEEEE
Q 011732 187 GMVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVR----RFAVGRTR----F-------MIMLLT---AHFTRIAV 245 (478)
Q Consensus 187 G~V~ai~~~-~g~~Ll~av--g~~l~v~~l~~~~~~~L~----~~a~~~~~----~-------~i~sL~---~~~n~Ilv 245 (478)
..+.+++-- +|++|+++. ++.+.+|+++.+..+ +. .+...... . .+..+. ..+.++++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM-PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC-EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCc-EEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 346666533 356565654 568999988742222 22 11211111 1 344554 44678998
Q ss_pred eecCC------cEEEEEEeccCceEEE----Ee-cCCCCceeEEEEee--cCCeEEEeCC-CCcEEEEecCCCcccCCCC
Q 011732 246 GDCRD------GILFYSYHEDARKLEQ----IY-CDPSQRLVADCVLM--DVDTAVVSDR-KGSIAVLSCSDRLEDNASP 311 (478)
Q Consensus 246 gD~~~------Sv~ll~y~~~~~~L~~----va-rD~~~~~vta~~~l--d~~~~l~aD~-~gNl~vl~~~~~~~~s~~~ 311 (478)
++.-. +|.++..+. .+++.. +. ....++++ +...- |...+++++. ++.+.+++.+..
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~~~~~~~~~~-a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~------- 342 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPTPTSGGHSN-AVSPCPWSDEWMAITDDQEGWLEIYRWKDE------- 342 (365)
T ss_dssp EEEESSTTSCCEEEEEEECT-TSCEEEEEEEEECSSCCTTCC-CEEECTTCTTEEEEECSSSCEEEEEEEETT-------
T ss_pred ECCCCCCCCCCeEEEEEECC-CCCEEEeeeeeecCCCCcccc-eecCCCcCCCEEEEEEcCCCeEEEEEEchh-------
Confidence 87654 688887754 455553 21 12234433 11111 4557777776 488999987541
Q ss_pred CccceeeeeeecCc
Q 011732 312 ECNLTPNCAYHMGE 325 (478)
Q Consensus 312 ~~~L~~~~~fhlGd 325 (478)
.|...+.+.+++
T Consensus 343 --~l~~~~~~~~~~ 354 (365)
T 1jof_A 343 --FLHRVARVRIPE 354 (365)
T ss_dssp --EEEEEEEEECCS
T ss_pred --hCceeeEEEcCC
Confidence 455555666665
No 153
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=91.08 E-value=5.8 Score=35.90 Aligned_cols=64 Identities=11% Similarity=-0.000 Sum_probs=37.9
Q ss_pred EEeCCEEE-EeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEeecCC-eEE-EeCCCCcEEEEecC
Q 011732 237 TAHFTRIA-VGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVD-TAV-VSDRKGSIAVLSCS 302 (478)
Q Consensus 237 ~~~~n~Il-vgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~-~~l-~aD~~gNl~vl~~~ 302 (478)
...+++|+ ++..-..+.++.++........+... ...+.++.+-.++ .++ +++.++.+.++.++
T Consensus 137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG--EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCCEEEEEECCCCceEEEEEECCCCcceEcccC--CCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence 33467676 56666677888887766666655433 3445666654333 333 45556677777664
No 154
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=90.89 E-value=11 Score=35.48 Aligned_cols=96 Identities=8% Similarity=-0.039 Sum_probs=53.8
Q ss_pred EEeeeCCceEEEEeC-------CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-EeecCC---cEEEEEEec
Q 011732 191 AICPYLDRYFLASAG-------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VGDCRD---GILFYSYHE 259 (478)
Q Consensus 191 ai~~~~g~~Ll~avg-------~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vgD~~~---Sv~ll~y~~ 259 (478)
+++.++++ |.+.-| +.+++|+... ...+.+.....+..-.++.+.+++|+ +|-.-. .-.+..|+.
T Consensus 154 ~~~~~~~~-iyv~GG~~~~~~~~~~~~~d~~~---~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 154 GLVVASGV-IYCLGGYDGLNILNSVEKYDPHT---GHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp EEEEETTE-EEEECCBCSSCBCCCEEEEETTT---TEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred eEEEECCE-EEEECCCCCCcccceEEEEeCCC---CcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeC
Confidence 34445666 444322 4578888765 22443332222333334455577775 443311 223566888
Q ss_pred cCceEEEEecCCCCceeEEEEeecCCeEEEe
Q 011732 260 DARKLEQIYCDPSQRLVADCVLMDVDTAVVS 290 (478)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~ld~~~~l~a 290 (478)
+.++-..++.-+.++...++..+++.-++.+
T Consensus 230 ~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 260 (301)
T 2vpj_A 230 RTDSWTTVTSMTTPRCYVGATVLRGRLYAIA 260 (301)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CCCcEEECCCCCCcccceeEEEECCEEEEEc
Confidence 8889999887777877666666665544443
No 155
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=90.61 E-value=10 Score=34.76 Aligned_cols=107 Identities=7% Similarity=-0.010 Sum_probs=53.7
Q ss_pred ceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCEEEEeecCCcEEEEEEeccCce
Q 011732 188 MVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHEDARK 263 (478)
Q Consensus 188 ~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~IlvgD~~~Sv~ll~y~~~~~~ 263 (478)
.+.+|+.-. |. |.++. +..|++++... + +...........+..|... ++.+++++...+ .++.|+. .++
T Consensus 100 ~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g---~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~ 172 (299)
T 2z2n_A 100 APYGITEGPNGD-IWFTEMNGNRIGRITDDG---K-IREYELPNKGSYPSFITLGSDNALWFTENQNN-AIGRITE-SGD 172 (299)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECTTC---C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTT-EEEEECT-TCC
T ss_pred CceeeEECCCCC-EEEEecCCceEEEECCCC---C-EEEecCCCCCCCCceEEEcCCCCEEEEeCCCC-EEEEEcC-CCc
Confidence 456666554 55 66665 56787777632 2 3322221122345666655 457888886543 2455666 566
Q ss_pred EEEEecCCCCceeEEEEeecCCeEEEeCC-CCcEEEEec
Q 011732 264 LEQIYCDPSQRLVADCVLMDVDTAVVSDR-KGSIAVLSC 301 (478)
Q Consensus 264 L~~varD~~~~~vta~~~ld~~~~l~aD~-~gNl~vl~~ 301 (478)
+..+.-........++.+-.++.+.+++. .+.|..+..
T Consensus 173 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 173 ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 65542222223344444322334455543 455555543
No 156
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=90.23 E-value=9 Score=37.18 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCcEEEEEECCC
Q 011732 44 SDICCVDPLSGSVLSSFKLEL 64 (478)
Q Consensus 44 s~l~l~d~~t~~~i~~~~l~~ 64 (478)
..|..+|+.|++.+.++.+..
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~ 83 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAE 83 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC
T ss_pred CeEEEEEccCCceeeeecCcc
Confidence 479999999999999998865
No 157
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=90.08 E-value=11 Score=34.45 Aligned_cols=105 Identities=12% Similarity=0.005 Sum_probs=59.9
Q ss_pred ceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCEEEEeecC-CcEEEEEEeccCc
Q 011732 188 MVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCR-DGILFYSYHEDAR 262 (478)
Q Consensus 188 ~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~IlvgD~~-~Sv~ll~y~~~~~ 262 (478)
.+.+|+.-. |. |.++. ++.|.+|+... + +...........+..|... ++.|++++.. .+|. .|++ .+
T Consensus 184 ~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g---~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~--~~d~-~g 255 (299)
T 2z2n_A 184 GPVGITKGNDDA-LWFVEIIGNKIGRITTSG---E-ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIG--RLTS-NN 255 (299)
T ss_dssp CEEEEEECTTSS-EEEEETTTTEEEEECTTC---C-EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEE--EEET-TT
T ss_pred cceeEEECCCCC-EEEEccCCceEEEECCCC---c-EEEEECCCCCCCceeEEECCCCCEEEeccCCceEE--EECC-CC
Confidence 355666544 55 66665 56788887722 2 3322211122346666664 3468899854 4554 4565 45
Q ss_pred eEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEec
Q 011732 263 KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 263 ~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~ 301 (478)
++..+.-......+.++.+ .++.+.+++..+.+..+..
T Consensus 256 ~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~ 293 (299)
T 2z2n_A 256 IIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTL 293 (299)
T ss_dssp EEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEE
T ss_pred ceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEc
Confidence 6666543322345666666 6667777766777777764
No 158
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=89.93 E-value=11 Score=35.65 Aligned_cols=115 Identities=8% Similarity=-0.005 Sum_probs=65.0
Q ss_pred ecCCceEEEeee---CCceEEEEe-CCeEEEEeeCCCCcccceeee-ecccceeEEEEEEe----CCEEEEeecCCcEEE
Q 011732 184 TWPGMVLAICPY---LDRYFLASA-GNAFYVCGFPNDNPQRVRRFA-VGRTRFMIMLLTAH----FTRIAVGDCRDGILF 254 (478)
Q Consensus 184 ~~~G~V~ai~~~---~g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a-~~~~~~~i~sL~~~----~n~IlvgD~~~Sv~l 254 (478)
...++|++|+-. .|.+|+.+. ..+|.+|++... + +.... +......|.++... +.+++.|..-..+.+
T Consensus 55 gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~--~-~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG--T-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131 (316)
T ss_dssp CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS--C-CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC--c-ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence 467899999853 266455554 567999998752 1 11111 11222345555543 468889998889998
Q ss_pred EEEeccCceEEEE-ecCCCCceeEEEEeec------------------CCeEEEeCCCCcEEEEecC
Q 011732 255 YSYHEDARKLEQI-YCDPSQRLVADCVLMD------------------VDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 255 l~y~~~~~~L~~v-arD~~~~~vta~~~ld------------------~~~~l~aD~~gNl~vl~~~ 302 (478)
+.++... ..... ....+...+.++.+-. ...++.+..++.+.+++..
T Consensus 132 wd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~ 197 (316)
T 3bg1_A 132 LTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE 197 (316)
T ss_dssp EEECSSS-CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred EecCCCC-CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeC
Confidence 8765421 12111 1112223344443321 1357777888888888764
No 159
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=89.81 E-value=1.9 Score=46.27 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=26.9
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCc
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS 55 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~ 55 (478)
+.+.++|+|+++.+++++- -+.|+++|..+..
T Consensus 131 sv~svafSPDG~~LAsgs~-------DGtVkIWd~~~~~ 162 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNE-------DGELQFFSIRKNS 162 (588)
T ss_dssp CEEEEEECSSSSCEEEEET-------TSEEEEEECCCCT
T ss_pred cEEEEEEcCCCCEEEEEcC-------CCEEEEEECCCCc
Confidence 4788999999999999863 3589999998875
No 160
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=89.71 E-value=13 Score=34.77 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=47.4
Q ss_pred EEeeeCCceEEEEeC-------CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-EeecCC---cEEEEEEec
Q 011732 191 AICPYLDRYFLASAG-------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VGDCRD---GILFYSYHE 259 (478)
Q Consensus 191 ai~~~~g~~Ll~avg-------~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vgD~~~---Sv~ll~y~~ 259 (478)
++..++++ |++.-| +.+++|+... ...+.+.....+..-.++.+.++.|+ +|..-. .-.+..|+.
T Consensus 201 ~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~---~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 201 GVALLNDH-IYVVGGFDGTAHLSSVEAYNIRT---DSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp EEEEETTE-EEEECCBCSSSBCCCEEEEETTT---TEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEET
T ss_pred eEEEECCE-EEEEeCCCCCcccceEEEEeCCC---CcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcC
Confidence 44455666 444433 3578888765 22443332222222233445577665 443321 135677888
Q ss_pred cCceEEEEecCCCCceeEEEEee
Q 011732 260 DARKLEQIYCDPSQRLVADCVLM 282 (478)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~l 282 (478)
+.++-..+..-+.+|.-.++..+
T Consensus 277 ~~~~W~~~~~~~~~r~~~~~~~~ 299 (301)
T 2vpj_A 277 IIDSWEVVTSMGTQRCDAGVCVL 299 (301)
T ss_dssp TTTEEEEEEEEEEEEESCEEEEE
T ss_pred CCCeEEEcCCCCcccccceEEEe
Confidence 88888887766666665554444
No 161
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=89.43 E-value=12 Score=33.77 Aligned_cols=65 Identities=3% Similarity=-0.054 Sum_probs=40.0
Q ss_pred EeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCC-CcEEEEEECCCCCceEEEEEEEEC-CeeEEEEeee
Q 011732 12 FHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS-GSVLSSFKLELGETGKSMELVRVG-HEQVLVVGTS 87 (478)
Q Consensus 12 i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t-~~~i~~~~l~~~E~~~s~~~~~l~-~~~~l~VGT~ 87 (478)
......+..++++|+.+.+++.. ...|.++|..+ ++............+.++ .+. +..+|+++..
T Consensus 38 ~~~~~~v~~~~~spdg~~l~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~spdg~~l~~~~~ 104 (297)
T 2ojh_A 38 WQTPELFEAPNWSPDGKYLLLNS--------EGLLYRLSLAGDPSPEKVDTGFATICNNDH---GISPDGALYAISDK 104 (297)
T ss_dssp EEESSCCEEEEECTTSSEEEEEE--------TTEEEEEESSSCCSCEECCCTTCCCBCSCC---EECTTSSEEEEEEC
T ss_pred ccCCcceEeeEECCCCCEEEEEc--------CCeEEEEeCCCCCCceEeccccccccccce---EECCCCCEEEEEEe
Confidence 34455778899999999777652 24799999988 776543333322344333 232 4466766653
No 162
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=88.95 E-value=20 Score=36.10 Aligned_cols=119 Identities=12% Similarity=0.130 Sum_probs=66.7
Q ss_pred cceEEEEEEEe-cCC--------ceE--EEeeeCCceEEEEeCCeEEEEeeCCCC------cccceeeeecccceeEEEE
Q 011732 174 TWQLRLAYSTT-WPG--------MVL--AICPYLDRYFLASAGNAFYVCGFPNDN------PQRVRRFAVGRTRFMIMLL 236 (478)
Q Consensus 174 ~~~l~l~~~~~-~~G--------~V~--ai~~~~g~~Ll~avg~~l~v~~l~~~~------~~~L~~~a~~~~~~~i~sL 236 (478)
...++++.+.. +++ +++ ++.+-.|. |++|.++.+.+|+++.-. ...+.+......+. |+.|
T Consensus 16 d~~Fk~l~~~~~~~~~~~~l~~~~~nlLais~~~gl-l~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l 93 (388)
T 1xip_A 16 DFGFKFLGQKQILPSFNEKLPFASLQNLDISNSKSL-FVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFV 93 (388)
T ss_dssp SCEEEEEEEEECSCCCTTCCCSSCCBCEEEETTTTE-EEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEE
T ss_pred ccceEECCccccccCccccCCcccccEEEEcCCCCE-EEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEE
Confidence 35677776544 111 244 34444455 777778889998865310 00022212234455 7777
Q ss_pred EEeCCEEEEeecCCcEEEEEEeccC----ceEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEecCC
Q 011732 237 TAHFTRIAVGDCRDGILFYSYHEDA----RKLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 237 ~~~~n~IlvgD~~~Sv~ll~y~~~~----~~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~~~ 303 (478)
...++.++|+ .-.+|.+ |+-.. ..+..+ ...+.++.++.. .+++...+|.|++++...
T Consensus 94 ~fd~~~L~v~-~~~~l~v--~dv~sl~~~~~~~~~-----~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 94 CFHGDQVLVS-TRNALYS--LDLEELSEFRTVTSF-----EKPVFQLKNVNN-TLVILNSVNDLSALDLRT 155 (388)
T ss_dssp EEETTEEEEE-ESSEEEE--EESSSTTCEEEEEEC-----SSCEEEEEECSS-EEEEEETTSEEEEEETTT
T ss_pred EECCCEEEEE-cCCcEEE--EEchhhhccCcccee-----ecceeeEEecCC-CEEEEECCCCEEEEEccC
Confidence 7777889898 3344444 54321 111111 122455566544 488889999999998753
No 163
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=88.67 E-value=17 Score=37.58 Aligned_cols=95 Identities=9% Similarity=0.093 Sum_probs=56.8
Q ss_pred eeEEEeCCCCcCE----EEEecCCCeEEEEEEe--------eCCC----cceeEEEEEeCCCCcEEEEEECCCC-CceEE
Q 011732 8 NVRKFHLGGTPKK----VLYHSESRLLIVMRTE--------LNND----TCSSDICCVDPLSGSVLSSFKLELG-ETGKS 70 (478)
Q Consensus 8 ~ir~i~L~~tp~k----i~y~~~~~~~~v~~~~--------~~~~----~~~s~l~l~d~~t~~~i~~~~l~~~-E~~~s 70 (478)
.+++++.+..|.. +-|+|..+.+++...- .+.. .....|.++|..+++++.++.+... ..+.-
T Consensus 176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~ 255 (462)
T 2ece_A 176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALE 255 (462)
T ss_dssp EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEE
T ss_pred EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccce
Confidence 4667777765543 5569999977666311 0111 3468999999999999999888632 22222
Q ss_pred EEEEEEC-CeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 71 MELVRVG-HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 71 ~~~~~l~-~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
+... +. +..+..|++.... ..-.+.|.+|..+
T Consensus 256 i~f~-~~Pdg~~aYV~~e~~~----------~~Lss~V~v~~~d 288 (462)
T 2ece_A 256 LRPL-HDPTKLMGFINMVVSL----------KDLSSSIWLWFYE 288 (462)
T ss_dssp EEEC-SSTTCCEEEEEEEEET----------TTCCEEEEEEEEE
T ss_pred eEee-ECCCCCEEEEEEeeec----------cCCCceEEEEEec
Confidence 2211 13 4466667766322 1135777777765
No 164
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=87.74 E-value=20 Score=34.27 Aligned_cols=133 Identities=12% Similarity=0.026 Sum_probs=68.6
Q ss_pred eEEEeee-CCceEEEEe--CCeEEEEeeCCCCc----ccceee-----eecccceeEEEEEE--eCCEEEEeec-CCcEE
Q 011732 189 VLAICPY-LDRYFLASA--GNAFYVCGFPNDNP----QRVRRF-----AVGRTRFMIMLLTA--HFTRIAVGDC-RDGIL 253 (478)
Q Consensus 189 V~ai~~~-~g~~Ll~av--g~~l~v~~l~~~~~----~~L~~~-----a~~~~~~~i~sL~~--~~n~IlvgD~-~~Sv~ 253 (478)
+++++-- .|++|+++. +.++.+|++..... +.|... ........+..+.. .+.++++++. -..|.
T Consensus 157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 236 (361)
T 3scy_A 157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVI 236 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence 3444433 355566654 46799999986422 103211 11122223444444 4668988885 55677
Q ss_pred EEEEeccCceEEEEec---CCC-CceeEEEEeecCC-eEEEeCCC--CcEEEEecCCCcccCCCCCccceeeeeeecCcc
Q 011732 254 FYSYHEDARKLEQIYC---DPS-QRLVADCVLMDVD-TAVVSDRK--GSIAVLSCSDRLEDNASPECNLTPNCAYHMGEI 326 (478)
Q Consensus 254 ll~y~~~~~~L~~var---D~~-~~~vta~~~ld~~-~~l~aD~~--gNl~vl~~~~~~~~s~~~~~~L~~~~~fhlGd~ 326 (478)
++.++ .+++..+.. .+. .....++.+-.++ .+++++.. +.+.++..+.. . .++.....+..|..
T Consensus 237 v~~~~--~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-----~--g~~~~~~~~~~g~~ 307 (361)
T 3scy_A 237 AFRYA--DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-----N--GTLTKVGYQLTGIH 307 (361)
T ss_dssp EEEEE--TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-----T--CCEEEEEEEECSSC
T ss_pred EEEec--CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-----C--CcEEEeeEecCCCC
Confidence 77665 445543322 111 1233455543333 45566665 77999887531 1 13555555555666
Q ss_pred ccEE
Q 011732 327 AVSI 330 (478)
Q Consensus 327 vt~~ 330 (478)
+..+
T Consensus 308 ~~~~ 311 (361)
T 3scy_A 308 PRNF 311 (361)
T ss_dssp CCEE
T ss_pred CceE
Confidence 6655
No 165
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=87.73 E-value=13 Score=35.35 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=24.2
Q ss_pred cCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCC--CcEEE
Q 011732 18 PKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLS--GSVLS 58 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t--~~~i~ 58 (478)
.+..+.. ..++|+++............+..+|+.+ |+.+.
T Consensus 102 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 102 LFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp SCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC
T ss_pred ccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC
Confidence 3344444 4567777765432334567899999986 55544
No 166
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=87.15 E-value=20 Score=33.63 Aligned_cols=81 Identities=14% Similarity=-0.072 Sum_probs=45.6
Q ss_pred eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-EeecCC---cEEEEEEeccCceEEEEecCCCCceeEEEEee
Q 011732 207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VGDCRD---GILFYSYHEDARKLEQIYCDPSQRLVADCVLM 282 (478)
Q Consensus 207 ~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vgD~~~---Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l 282 (478)
.+.+|+.... ..+.+.....+..-.++.+.++.|+ +|-.-. .-.+..|+.+.++-..++.-+.+|.-.++..+
T Consensus 174 ~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 250 (302)
T 2xn4_A 174 TVECYNATTN---EWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV 250 (302)
T ss_dssp CEEEEETTTT---EEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEEEEeCCCC---cEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE
Confidence 4777777642 2333332222223334445577665 543321 12356788888889988877777776566656
Q ss_pred cCCeEEEe
Q 011732 283 DVDTAVVS 290 (478)
Q Consensus 283 d~~~~l~a 290 (478)
++.-++.+
T Consensus 251 ~~~i~v~G 258 (302)
T 2xn4_A 251 NGLLYVVG 258 (302)
T ss_dssp TTEEEEEC
T ss_pred CCEEEEEC
Confidence 55544443
No 167
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=87.03 E-value=20 Score=33.63 Aligned_cols=82 Identities=12% Similarity=-0.017 Sum_probs=46.8
Q ss_pred CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-EeecCC---cEEEEEEeccCceEEEEecCCCCceeEEEEe
Q 011732 206 NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VGDCRD---GILFYSYHEDARKLEQIYCDPSQRLVADCVL 281 (478)
Q Consensus 206 ~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vgD~~~---Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ 281 (478)
+.+++|+...+ ..+.+.....+..-.++.+.+++|+ +|-... .-.+..|+...++-..++.-+.++.-.++..
T Consensus 169 ~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 169 NSCEVYDPATE---TWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCEEEEETTTT---EEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred ceEEEeCCCCC---eEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence 34778877652 2444333222333334445577665 443211 1235568888888898887777787766666
Q ss_pred ecCCeEEEe
Q 011732 282 MDVDTAVVS 290 (478)
Q Consensus 282 ld~~~~l~a 290 (478)
+++.-++.+
T Consensus 246 ~~~~i~v~G 254 (306)
T 3ii7_A 246 VGSIVYVLA 254 (306)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEe
Confidence 666544443
No 168
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=86.83 E-value=23 Score=37.72 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=32.9
Q ss_pred CCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEEC
Q 011732 15 GGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKL 62 (478)
Q Consensus 15 ~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l 62 (478)
+..+..+.++|+.+.++.+... ..+.....|+++|..+++.......
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~-d~~~~~~~i~~~d~~~g~~~~~~~~ 82 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGK-DSDRNQLDLWSYDIGSGQTRLLVDS 82 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECC-SSCTTEEEEEEEETTTCCEEEEECG
T ss_pred CCCCCCceEecCCCEEEEEecc-CCCCcccEEEEEECCCCceeEccch
Confidence 3457889999999988877541 1112356899999999876555443
No 169
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=86.76 E-value=18 Score=32.93 Aligned_cols=55 Identities=13% Similarity=0.282 Sum_probs=34.8
Q ss_pred eeEEEeCC---CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCC-CceEEE
Q 011732 8 NVRKFHLG---GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELG-ETGKSM 71 (478)
Q Consensus 8 ~ir~i~L~---~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~-E~~~s~ 71 (478)
.++.+++. ..|+.|+..++.++|+... ....|..+|+. ++.. .+.++.. ..+.++
T Consensus 9 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-------~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i 67 (300)
T 2qc5_A 9 YLEEFNLSIPDSGPYGITSSEDGKVWFTQH-------KANKISSLDQS-GRIK-EFEVPTPDAKVMCL 67 (300)
T ss_dssp EEEEEECSSTTCCEEEEEECTTSCEEEEET-------TTTEEEEECTT-SCEE-EEECSSTTCCEEEE
T ss_pred eEEEEecCCCCCCcceeeECCCCCEEEEcC-------CCCeEEEECCC-CceE-EEECCCCCCcceeE
Confidence 35566663 4899999999988777532 13578889987 5543 3555432 344444
No 170
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=86.75 E-value=21 Score=33.65 Aligned_cols=86 Identities=17% Similarity=0.127 Sum_probs=47.5
Q ss_pred EEeeeCCceEEEEeC-------CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-EeecC---CcEEEEEEec
Q 011732 191 AICPYLDRYFLASAG-------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VGDCR---DGILFYSYHE 259 (478)
Q Consensus 191 ai~~~~g~~Ll~avg-------~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vgD~~---~Sv~ll~y~~ 259 (478)
+++.++++ |++.-| +.+++|++... ..+.+.....+..-.++.+.++.|+ +|-.- ..-.+..|++
T Consensus 210 ~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 210 GVCVLHNC-IYAAGGYDGQDQLNSVERYDVETE---TWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp EEEEETTE-EEEECCBCSSSBCCCEEEEETTTT---EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred eEEEECCE-EEEEeCCCCCCccceEEEEeCCCC---cEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcC
Confidence 34455666 444333 45788887652 2333332222222333445577665 44321 1234567888
Q ss_pred cCceEEEEecCCCCceeEEEE
Q 011732 260 DARKLEQIYCDPSQRLVADCV 280 (478)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~ 280 (478)
+.++-..++.-+.+|.-.++.
T Consensus 286 ~~~~W~~~~~~p~~r~~~~~~ 306 (308)
T 1zgk_A 286 DTDTWSEVTRMTSGRSGVGVA 306 (308)
T ss_dssp TTTEEEEEEECSSCCBSCEEE
T ss_pred CCCEEeecCCCCCCcccceeE
Confidence 888888888878777655444
No 171
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=86.71 E-value=21 Score=33.58 Aligned_cols=117 Identities=11% Similarity=0.024 Sum_probs=78.1
Q ss_pred ceEEEEEEEecCCc--eEEEeeeCCceEEEEeCC----eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeec
Q 011732 175 WQLRLAYSTTWPGM--VLAICPYLDRYFLASAGN----AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDC 248 (478)
Q Consensus 175 ~~l~l~~~~~~~G~--V~ai~~~~g~~Ll~avg~----~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~ 248 (478)
...+++.+.+++.. ...+.-.++. |..+.|. .|.++++.. .+.++.. ......+...|...+++|++.+-
T Consensus 7 ~~~~v~~~~phd~~~ftqGL~~~~~~-LyestG~~g~S~v~~vD~~t--gkv~~~~-~l~~~~fgeGi~~~~~~ly~ltw 82 (243)
T 3mbr_X 7 QGYRVVKRYPHDTTAFTEGLFYLRGH-LYESTGETGRSSVRKVDLET--GRILQRA-EVPPPYFGAGIVAWRDRLIQLTW 82 (243)
T ss_dssp CCEEEEEEEECCTTCCEEEEEEETTE-EEEEECCTTSCEEEEEETTT--CCEEEEE-ECCTTCCEEEEEEETTEEEEEES
T ss_pred cceEEEEEcCCCCccccccEEEECCE-EEEECCCCCCceEEEEECCC--CCEEEEE-eCCCCcceeEEEEeCCEEEEEEe
Confidence 56788888887754 5577655454 9999886 799999975 3334433 23445567778888999999988
Q ss_pred CCcEEEEEEeccCceEE-EEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEe
Q 011732 249 RDGILFYSYHEDARKLE-QIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 249 ~~Sv~ll~y~~~~~~L~-~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~ 300 (478)
..+. ++.|+....++. .+.-... =|..+ -|...++++|..+.|++++
T Consensus 83 ~~~~-v~v~D~~tl~~~~ti~~~~~-Gwglt---~dg~~L~vSdgs~~l~~iD 130 (243)
T 3mbr_X 83 RNHE-GFVYDLATLTPRARFRYPGE-GWALT---SDDSHLYMSDGTAVIRKLD 130 (243)
T ss_dssp SSSE-EEEEETTTTEEEEEEECSSC-CCEEE---ECSSCEEEECSSSEEEEEC
T ss_pred eCCE-EEEEECCcCcEEEEEeCCCC-ceEEe---eCCCEEEEECCCCeEEEEe
Confidence 7776 556787654443 3332222 23322 2566899999988888775
No 172
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=86.66 E-value=21 Score=33.44 Aligned_cols=90 Identities=16% Similarity=0.057 Sum_probs=47.7
Q ss_pred EEeeeCCceEEEEeC-------CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-EeecCC---cEEEEEEec
Q 011732 191 AICPYLDRYFLASAG-------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VGDCRD---GILFYSYHE 259 (478)
Q Consensus 191 ai~~~~g~~Ll~avg-------~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vgD~~~---Sv~ll~y~~ 259 (478)
+++.++++ |++.-| +.+.+|+.... ..+.+.....+..-.++.+.++.|+ +|-.-. .-.+..|++
T Consensus 199 ~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 199 GVGVLNNL-LYAVGGHDGPLVRKSVEVYDPTTN---AWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp EEEEETTE-EEEECCBSSSSBCCCEEEEETTTT---EEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred cEEEECCE-EEEECCCCCCcccceEEEEeCCCC---CEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcC
Confidence 44556666 444332 35788887652 2333332222222223444566664 554321 123566888
Q ss_pred cCceEEEEe-cCCCCceeEEEEeecC
Q 011732 260 DARKLEQIY-CDPSQRLVADCVLMDV 284 (478)
Q Consensus 260 ~~~~L~~va-rD~~~~~vta~~~ld~ 284 (478)
+.++-..+. .-+.+|.-.++..+++
T Consensus 275 ~~~~W~~~~~~~~~~r~~~~~~~~~~ 300 (302)
T 2xn4_A 275 TTDKWTVVSSCMSTGRSYAGVTVIDK 300 (302)
T ss_dssp TTTEEEECSSCCSSCCBSCEEEEEEC
T ss_pred CCCeEEECCcccCcccccceEEEecc
Confidence 888888886 5566766555555543
No 173
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=86.51 E-value=17 Score=34.34 Aligned_cols=81 Identities=10% Similarity=-0.099 Sum_probs=45.0
Q ss_pred CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-EeecCC---cEEEEEEeccCceEEEEecCCCCceeEEEEe
Q 011732 206 NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VGDCRD---GILFYSYHEDARKLEQIYCDPSQRLVADCVL 281 (478)
Q Consensus 206 ~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vgD~~~---Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ 281 (478)
+.+.+|+.... ....+.....+..-.++.+.+++|+ +|-.-. .-.+..|+...++-..+..-+.+|...++..
T Consensus 184 ~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 260 (308)
T 1zgk_A 184 NSAECYYPERN---EWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV 260 (308)
T ss_dssp CCEEEEETTTT---EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEEeCCCC---eEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE
Confidence 45788877652 2333332222222233445577775 443321 2335667888888888887677777666666
Q ss_pred ecCCeEEE
Q 011732 282 MDVDTAVV 289 (478)
Q Consensus 282 ld~~~~l~ 289 (478)
+++.-++.
T Consensus 261 ~~~~i~v~ 268 (308)
T 1zgk_A 261 HQGRIYVL 268 (308)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 65544443
No 174
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=86.04 E-value=16 Score=34.66 Aligned_cols=80 Identities=8% Similarity=-0.052 Sum_probs=45.9
Q ss_pred eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-EeecCC----cEEEEEEeccCceEEEEecCCCCceeEEEEe
Q 011732 207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VGDCRD----GILFYSYHEDARKLEQIYCDPSQRLVADCVL 281 (478)
Q Consensus 207 ~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vgD~~~----Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ 281 (478)
.+++|+... ...+.++....+..-.+..+.+++|+ +|-... .-.+..|++..++-..++.-+.+|...++..
T Consensus 118 ~~~~~d~~~---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 194 (315)
T 4asc_A 118 SVMCYDRLS---FKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV 194 (315)
T ss_dssp CEEEEETTT---TEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEEECCCC---CcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE
Confidence 367777664 22443333222333334445677665 554311 1235667888888888887777887766666
Q ss_pred ecCCeEEE
Q 011732 282 MDVDTAVV 289 (478)
Q Consensus 282 ld~~~~l~ 289 (478)
+++.-++.
T Consensus 195 ~~~~iyv~ 202 (315)
T 4asc_A 195 HDGRIIVA 202 (315)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 66654443
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=85.80 E-value=25 Score=33.49 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=36.1
Q ss_pred CCcCEEEEecCCCeEEEEEEeeCC-----------------CcceeEEEEEeCCCCcEEEEEECCCCCceEEEEE
Q 011732 16 GTPKKVLYHSESRLLIVMRTELNN-----------------DTCSSDICCVDPLSGSVLSSFKLELGETGKSMEL 73 (478)
Q Consensus 16 ~tp~ki~y~~~~~~~~v~~~~~~~-----------------~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~ 73 (478)
..|.-|+++|+.++|+.......- ......|.++|+.+++++..+.-.....+..+++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE
Confidence 368899999999988654322100 0012479999999999876554333345555543
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=85.67 E-value=39 Score=35.65 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=41.6
Q ss_pred eeEEEeCCCCcCEEEEe----cCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECC
Q 011732 8 NVRKFHLGGTPKKVLYH----SESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLE 63 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~----~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~ 63 (478)
.+++|+.|..|+.|+++ |+.+.++|+... .+.+.++|..|++++..+...
T Consensus 232 ~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 232 TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECC
T ss_pred EeEEEecCCCCceeEEccccCCCCCEEEEEEcc------CCeEEEEECCCCcEEEEEecc
Confidence 46789999999999999 699888887542 357899999999999887764
No 177
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=85.28 E-value=25 Score=33.02 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=26.5
Q ss_pred eeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEE
Q 011732 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLV 83 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~ 83 (478)
...|.++|++|++.+.++..+..+.+.++.. ..+..+++
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~--~pdG~ilv 52 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAA--TKAGEILF 52 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEE--CTTSCEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEE--CCCCCEEE
Confidence 4689999999999999998876444544432 23334444
No 178
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=85.16 E-value=23 Score=33.22 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=51.1
Q ss_pred EEeeeCCceEEEEeC--------CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-EeecCC-------cEEE
Q 011732 191 AICPYLDRYFLASAG--------NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VGDCRD-------GILF 254 (478)
Q Consensus 191 ai~~~~g~~Ll~avg--------~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vgD~~~-------Sv~l 254 (478)
+++.++++ |.+.-| +.+++|+... ...+.+.....+..-.++.+.+++|+ +|-... .-.+
T Consensus 96 ~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~~~---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 171 (306)
T 3ii7_A 96 AACAAEGK-IYTSGGSEVGNSALYLFECYDTRT---ESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSC 171 (306)
T ss_dssp EEEEETTE-EEEECCBBTTBSCCCCEEEEETTT---TEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCE
T ss_pred eEEEECCE-EEEECCCCCCCcEeeeEEEEeCCC---CceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceE
Confidence 44455666 544433 2377777664 22333333222223333344577665 443211 2235
Q ss_pred EEEeccCceEEEEecCCCCceeEEEEeecCCeEEE
Q 011732 255 YSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVV 289 (478)
Q Consensus 255 l~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~ 289 (478)
..|+...++-..++.-+.+|.-.++..+++.-++.
T Consensus 172 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 206 (306)
T 3ii7_A 172 EVYDPATETWTELCPMIEARKNHGLVFVKDKIFAV 206 (306)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred EEeCCCCCeEEECCCccchhhcceEEEECCEEEEE
Confidence 56788888888888667777766666665544444
No 179
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=85.12 E-value=11 Score=39.20 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=58.6
Q ss_pred CCC-CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEee-----e
Q 011732 14 LGG-TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGT-----S 87 (478)
Q Consensus 14 L~~-tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT-----~ 87 (478)
.|. .|+.+.-.|+. +|+ .+.....+.....|-++|..|++++...+.+.+......-+|.-.+..++++-. .
T Consensus 135 ~g~s~Ph~~~~~pdG-i~V-s~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~ 212 (462)
T 2ece_A 135 SGYSRLHTVHCGPDA-IYI-SALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNT 212 (462)
T ss_dssp HCEEEEEEEEECSSC-EEE-EEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHH
T ss_pred cCCCcccceeECCCe-EEE-EcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccc
Confidence 455 78888889988 444 554444456678999999999999999887766543333344444444444432 1
Q ss_pred cCCCCCCCCCC-CCcCcceEEEEEEEE
Q 011732 88 LSSGPAIMPSG-EAESTKGRLIVLCIE 113 (478)
Q Consensus 88 ~~~g~~~~~~~-e~~~~~Gri~v~~i~ 113 (478)
+-.| .+|.+ ++ .-..+|.+|++.
T Consensus 213 ~~~g--~~~~~~~~-~~~d~V~v~D~~ 236 (462)
T 2ece_A 213 IEDG--LKLEHLKD-RYGNRIHFWDLR 236 (462)
T ss_dssp HTTC--CCTTTHHH-HSCCEEEEEETT
T ss_pred cccc--cchhhhhh-ccCCEEEEEECC
Confidence 2121 22211 01 346889999886
No 180
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=84.76 E-value=11 Score=38.04 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=43.8
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeC---CCcceeEEEEEeCCCCcEEEEEECCC
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELN---NDTCSSDICCVDPLSGSVLSSFKLEL 64 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~---~~~~~s~l~l~d~~t~~~i~~~~l~~ 64 (478)
.+.+|+.|..|+ |+++|+.+.+.|+.+... .+.....|.+||..|++++..+.++.
T Consensus 71 v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~ 129 (386)
T 3sjl_D 71 VIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD 129 (386)
T ss_dssp EEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred EEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCC
Confidence 468899999996 999999998877754211 01124689999999999999998875
No 181
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=82.83 E-value=32 Score=32.40 Aligned_cols=112 Identities=11% Similarity=0.142 Sum_probs=70.9
Q ss_pred ecCCceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEec
Q 011732 184 TWPGMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHE 259 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~ 259 (478)
...++|++++--. |.+|+.+. ..+|.+|++.. .+.+.... .....|.++.. .+++|+.|..-..+.++..
T Consensus 63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~--~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~-- 136 (319)
T 3frx_A 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--GETYQRFV--GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-- 136 (319)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEE--CCSSCEEEEEECTTSCEEEEEETTSCEEEEET--
T ss_pred CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC--CCeeEEEc--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC--
Confidence 4678999887554 56455554 56799999976 22233222 22334555554 4678999988888888653
Q ss_pred cCceEEEEecCCCCceeEEEEeecC-------CeEEEeCCCCcEEEEecCC
Q 011732 260 DARKLEQIYCDPSQRLVADCVLMDV-------DTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 260 ~~~~L~~varD~~~~~vta~~~ld~-------~~~l~aD~~gNl~vl~~~~ 303 (478)
....+..+. ....++.++.+... ..++.+..++.+.++....
T Consensus 137 ~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 185 (319)
T 3frx_A 137 KGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185 (319)
T ss_dssp TSCEEEEEC--CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred CCCeEEEEe--ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence 344444332 23456777766532 2688888999999998753
No 182
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=82.32 E-value=35 Score=32.48 Aligned_cols=117 Identities=10% Similarity=0.096 Sum_probs=77.2
Q ss_pred ceEEEEEEEecCCce--EEEeeeCCceEEEEeCC----eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeec
Q 011732 175 WQLRLAYSTTWPGMV--LAICPYLDRYFLASAGN----AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDC 248 (478)
Q Consensus 175 ~~l~l~~~~~~~G~V--~ai~~~~g~~Ll~avg~----~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~ 248 (478)
...+++.+.+.+... ..|.-.++ .|..+.|. +|.++++.. .+.++... .....+...|...+++|++.+-
T Consensus 29 ~~~~vv~~~phd~~~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~T--gkv~~~~~-l~~~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 29 YDYQIVHSYPHDTKAFTEGFFYRNG-YFYESTGLNGRSSIRKVDIES--GKTLQQIE-LGKRYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp EEEEEEEEEECCTTCEEEEEEEETT-EEEEEEEETTEEEEEEECTTT--CCEEEEEE-CCTTCCEEEEEEETTEEEEEES
T ss_pred cceEEEEEecCCCCcccceEEEECC-EEEEECCCCCCceEEEEECCC--CcEEEEEe-cCCccceeEEEEeCCEEEEEEe
Confidence 567888888887555 67765544 48888876 789988875 33344332 3445567778888999999988
Q ss_pred CCcEEEEEEeccCceEE-EEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEe
Q 011732 249 RDGILFYSYHEDARKLE-QIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 249 ~~Sv~ll~y~~~~~~L~-~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~ 300 (478)
..+. ++.|+....++. .+.-.... |..+ -|...++++|..+.|++++
T Consensus 105 ~~~~-v~v~D~~t~~~~~ti~~~~eG-~glt---~dg~~L~~SdGs~~i~~iD 152 (262)
T 3nol_A 105 KNGL-GFVWNIRNLRQVRSFNYDGEG-WGLT---HNDQYLIMSDGTPVLRFLD 152 (262)
T ss_dssp SSSE-EEEEETTTCCEEEEEECSSCC-CCEE---ECSSCEEECCSSSEEEEEC
T ss_pred eCCE-EEEEECccCcEEEEEECCCCc-eEEe---cCCCEEEEECCCCeEEEEc
Confidence 7776 556787654433 33332222 3322 2566889999877777765
No 183
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=81.73 E-value=34 Score=31.94 Aligned_cols=70 Identities=9% Similarity=0.130 Sum_probs=40.6
Q ss_pred EEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeec
Q 011732 10 RKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSL 88 (478)
Q Consensus 10 r~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~ 88 (478)
+.+.+...|..|+.+|+.++ +|+. ...|.++|+.+++.......+.+.......-+.+..+--+.+||..
T Consensus 48 ~~~~~~~~~~~i~~~~dG~l-~v~~--------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~ 117 (297)
T 3g4e_A 48 QRVTMDAPVSSVALRQSGGY-VATI--------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMA 117 (297)
T ss_dssp EEEECSSCEEEEEEBTTSSE-EEEE--------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEE
T ss_pred EEEeCCCceEEEEECCCCCE-EEEE--------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCC
Confidence 45667778889999999883 3332 1368899998876543333332222233333444433236667753
No 184
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=80.65 E-value=41 Score=32.15 Aligned_cols=115 Identities=10% Similarity=0.008 Sum_probs=76.6
Q ss_pred eEEEEEEEecCCce--EEEeeeCCceEEEEeCC--eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCc
Q 011732 176 QLRLAYSTTWPGMV--LAICPYLDRYFLASAGN--AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDG 251 (478)
Q Consensus 176 ~l~l~~~~~~~G~V--~ai~~~~g~~Ll~avg~--~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~S 251 (478)
..+++.+.+.+... ..|.-- |+.|.++.|. +|.++++.. .+.++.. ..-..+...|...+++|++.+-..+
T Consensus 42 ~~~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~T--gkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 42 VAHIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLES--AQPVWME--RLGNIFAEGLASDGERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSC--SSCSEEE--ECTTCCEEEEEECSSCEEEEESSSC
T ss_pred ceEEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCC--CcEEeEE--CCCCcceeEEEEeCCEEEEEEccCC
Confidence 45677777776544 677654 4448899877 588888875 3445544 4555567778888999999988777
Q ss_pred EEEEEEeccCceEE-EEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEe
Q 011732 252 ILFYSYHEDARKLE-QIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 252 v~ll~y~~~~~~L~-~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~ 300 (478)
. ++.|+....++. .+.-.... |..+ -|...++++|..+.|++++
T Consensus 117 ~-v~V~D~~Tl~~~~ti~~~~eG-wGLt---~Dg~~L~vSdGs~~l~~iD 161 (268)
T 3nok_A 117 L-LFTWSGMPPQRERTTRYSGEG-WGLC---YWNGKLVRSDGGTMLTFHE 161 (268)
T ss_dssp E-EEEEETTTTEEEEEEECSSCC-CCEE---EETTEEEEECSSSEEEEEC
T ss_pred E-EEEEECCcCcEEEEEeCCCce-eEEe---cCCCEEEEECCCCEEEEEc
Confidence 6 556787655444 33332222 3333 3567899999888777775
No 185
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=79.49 E-value=42 Score=33.72 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=68.6
Q ss_pred EecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCc
Q 011732 183 TTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDAR 262 (478)
Q Consensus 183 ~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~ 262 (478)
.++++ |++|+- .|.+|+++.+..|++|+...- ............+.+++...+.+++++.-.++.++.. .++
T Consensus 85 ~~lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~sl----~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl--~~~ 156 (388)
T 1xip_A 85 KEIPD-VIFVCF-HGDQVLVSTRNALYSLDLEEL----SEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDL--RTK 156 (388)
T ss_dssp EECTT-EEEEEE-ETTEEEEEESSEEEEEESSST----TCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEET--TTC
T ss_pred eeCCC-eeEEEE-CCCEEEEEcCCcEEEEEchhh----hccCccceeecceeeEEecCCCEEEEECCCCEEEEEc--cCC
Confidence 46888 999998 888899999999999998752 1111111223345677777766878887788877654 344
Q ss_pred eEEEEecCCCCceeEEEEeecCCeEEEeCCCCcEEEEec
Q 011732 263 KLEQIYCDPSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 263 ~L~~varD~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~ 301 (478)
++..++ -.|+++.. ..+..+.+-.+|++.+|.-
T Consensus 157 ~~~~~~-----~~Vs~v~W-SpkG~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 157 STKQLA-----QNVTSFDV-TNSQLAVLLKDRSFQSFAW 189 (388)
T ss_dssp CEEEEE-----ESEEEEEE-CSSEEEEEETTSCEEEEEE
T ss_pred cccccc-----CCceEEEE-cCCceEEEEcCCcEEEEcC
Confidence 444332 25665554 4334666778899988854
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=78.66 E-value=41 Score=31.00 Aligned_cols=54 Identities=11% Similarity=0.003 Sum_probs=34.1
Q ss_pred eEEEeCCC-CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEE
Q 011732 9 VRKFHLGG-TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSM 71 (478)
Q Consensus 9 ir~i~L~~-tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~ 71 (478)
++.+.-+. .|.-++|+|+.+.++++.. ....|..+|+.+. ...+... ...+.++
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~------~~~~i~~~~~~~~--~~~~~~~-~~~~~~l 74 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDV------RQNRTWAWSDDGQ--LSPEMHP-SHHQNGH 74 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEG------GGTEEEEEETTSC--EEEEESS-CSSEEEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeC------CCCEEEEEECCCC--eEEEECC-CCCccee
Confidence 34555444 7899999999994444432 2357999999876 4555543 3345444
No 187
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=78.28 E-value=71 Score=33.57 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=47.0
Q ss_pred cCEEEEecCCCeEEEEEEeeCC--------------------------CcceeEEEEEeCCCCcEEEEEECCCC-CceEE
Q 011732 18 PKKVLYHSESRLLIVMRTELNN--------------------------DTCSSDICCVDPLSGSVLSSFKLELG-ETGKS 70 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~--------------------------~~~~s~l~l~d~~t~~~i~~~~l~~~-E~~~s 70 (478)
++.+.++|+++.++++..+... ......|.++|..+++.......... ..+.+
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 4789999999998888643210 11346899999988875433222122 22332
Q ss_pred EEEEEEC-CeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 71 MELVRVG-HEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 71 ~~~~~l~-~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
+.+. +..+|+++.... ....++|+++++.
T Consensus 263 ---~~~spdg~~l~~~~~~~-----------~~~~~~v~~~d~~ 292 (706)
T 2z3z_A 263 ---LSWSPDENILYVAEVNR-----------AQNECKVNAYDAE 292 (706)
T ss_dssp ---EEECTTSSEEEEEEECT-----------TSCEEEEEEEETT
T ss_pred ---EEEECCCCEEEEEEeCC-----------CCCeeEEEEEECC
Confidence 3333 446666665421 1235677777664
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=77.65 E-value=40 Score=30.28 Aligned_cols=107 Identities=7% Similarity=-0.023 Sum_probs=54.1
Q ss_pred eEEEeee-CCceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeC-CEEEEeecCC-cEEEEEEeccCce
Q 011732 189 VLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF-TRIAVGDCRD-GILFYSYHEDARK 263 (478)
Q Consensus 189 V~ai~~~-~g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~-n~IlvgD~~~-Sv~ll~y~~~~~~ 263 (478)
+.+|+.- +|+ |.++. +..|++|+.... . ........ ...+..|.... +.++++|... .|. .|+.....
T Consensus 152 p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~--~-~~~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~--~~~~~~~~ 224 (270)
T 1rwi_B 152 PDGVAVDNSGN-VYVTDTDNNRVVKLEAESN--N-QVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVV--KLLAGSTT 224 (270)
T ss_dssp CCCEEECTTCC-EEEEEGGGTEEEEECTTTC--C-EEECCCSS-CCSEEEEEECTTCCEEEEETTTSCEE--EECTTCSC
T ss_pred ceeEEEeCCCC-EEEEECCCCEEEEEecCCC--c-eEeecccC-CCCceEEEECCCCCEEEEECCCCcEE--EEcCCCCc
Confidence 3444433 355 66654 457888877641 1 22111111 13466666654 3889998754 454 45555443
Q ss_pred EEEEecCCCCceeEEEEeecCCeEEEeCC-CCcEEEEecCC
Q 011732 264 LEQIYCDPSQRLVADCVLMDVDTAVVSDR-KGSIAVLSCSD 303 (478)
Q Consensus 264 L~~varD~~~~~vta~~~ld~~~~l~aD~-~gNl~vl~~~~ 303 (478)
....... ....+.++.+-.++.+.++|. ++.|.+++.+.
T Consensus 225 ~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 225 STVLPFT-GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CEECCCC-SCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred ceeeccC-CCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 3332211 123455555433345555554 66677776653
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=77.64 E-value=41 Score=30.47 Aligned_cols=73 Identities=4% Similarity=-0.080 Sum_probs=38.8
Q ss_pred ceEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCEEEEeecCCcEEEEEEeccCce
Q 011732 188 MVLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHEDARK 263 (478)
Q Consensus 188 ~V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~IlvgD~~~Sv~ll~y~~~~~~ 263 (478)
.+.+|+.-. |+ |.++. +..|++|+... + +...........+..|... ++.|++++...+ .++.|+. .++
T Consensus 147 ~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g---~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-~i~~~~~-~g~ 219 (300)
T 2qc5_A 147 YPAFITLGSDNA-LWFTENQNNSIGRITNTG---K-LEEYPLPTNAAAPVGITSGNDGALWFVEIMGN-KIGRITT-TGE 219 (300)
T ss_dssp CEEEEEECTTSS-EEEEETTTTEEEEECTTC---C-EEEEECSSTTCCEEEEEECTTSSEEEEETTTT-EEEEECT-TCC
T ss_pred CceeEEECCCCC-EEEEecCCCeEEEECCCC---c-EEEeeCCCCCCCcceEEECCCCCEEEEccCCC-EEEEEcC-CCc
Confidence 456665443 55 66665 56788877632 2 3322211112245566654 457888887654 2444565 445
Q ss_pred EEEE
Q 011732 264 LEQI 267 (478)
Q Consensus 264 L~~v 267 (478)
+...
T Consensus 220 ~~~~ 223 (300)
T 2qc5_A 220 ISEY 223 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 190
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=77.32 E-value=48 Score=31.10 Aligned_cols=55 Identities=7% Similarity=0.128 Sum_probs=36.7
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEE
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSME 72 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~ 72 (478)
.+..+|.+..|.-++++++.++|++-. ....|..+|+.+ +....+.+. ..+.+++
T Consensus 24 ~~~~~p~~~~pegia~~~~g~lyv~d~-------~~~~I~~~d~~g-~~~~~~~~~--~~p~gia 78 (306)
T 2p4o_A 24 IITSFPVNTFLENLASAPDGTIFVTNH-------EVGEIVSITPDG-NQQIHATVE--GKVSGLA 78 (306)
T ss_dssp EEEEECTTCCEEEEEECTTSCEEEEET-------TTTEEEEECTTC-CEEEEEECS--SEEEEEE
T ss_pred EeEeCCCCCCcceEEECCCCCEEEEeC-------CCCeEEEECCCC-ceEEEEeCC--CCceeEE
Confidence 466889999999999999888666542 135688889875 343334433 4455443
No 191
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=76.66 E-value=37 Score=34.59 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=43.9
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeC---CCcceeEEEEEeCCCCcEEEEEECC
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELN---NDTCSSDICCVDPLSGSVLSSFKLE 63 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~---~~~~~s~l~l~d~~t~~~i~~~~l~ 63 (478)
.+.+||+|..| .|+++|+.+.+.|+....+ .+.....|.+||..|++++..+.++
T Consensus 111 vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~ 168 (426)
T 3c75_H 111 ILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELP 168 (426)
T ss_dssp EEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred EEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECC
Confidence 46889999999 9999999998888764211 0122468999999999999998886
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=74.74 E-value=52 Score=30.24 Aligned_cols=41 Identities=5% Similarity=-0.133 Sum_probs=26.7
Q ss_pred EEEeCC-CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEE
Q 011732 10 RKFHLG-GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVL 57 (478)
Q Consensus 10 r~i~L~-~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i 57 (478)
+.+... ..|..|+++|+.++++.. . ....|.++|+.+++..
T Consensus 62 ~~~~~~~~~~~~l~~~~dg~l~v~~-~------~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 62 SPEMHPSHHQNGHCLNKQGHLIACS-H------GLRRLERQREPGGEWE 103 (296)
T ss_dssp EEEESSCSSEEEEEECTTCCEEEEE-T------TTTEEEEECSTTCCEE
T ss_pred EEEECCCCCcceeeECCCCcEEEEe-c------CCCeEEEEcCCCCcEE
Confidence 344433 368889999988865432 1 1257899999887653
No 193
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=74.52 E-value=86 Score=32.85 Aligned_cols=46 Identities=11% Similarity=0.027 Sum_probs=33.3
Q ss_pred EEEEecCCCeEEEEEEeeC---------CCcceeEEEEEeCCCCcEEEEEECCCC
Q 011732 20 KVLYHSESRLLIVMRTELN---------NDTCSSDICCVDPLSGSVLSSFKLELG 65 (478)
Q Consensus 20 ki~y~~~~~~~~v~~~~~~---------~~~~~s~l~l~d~~t~~~i~~~~l~~~ 65 (478)
-++|+++.+.+.+.+.... ...+..+|..+|+.|++.+.++++.++
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~ 293 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH 293 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence 4789998887777653211 122346799999999999999998754
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=74.22 E-value=57 Score=30.41 Aligned_cols=60 Identities=10% Similarity=0.214 Sum_probs=36.8
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeee
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTS 87 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~ 87 (478)
.|..++++|+.++|++.. ....|.++|+.+.+..... ......+.+++ +..+..+.|++.
T Consensus 46 ~~~~~~~~~~g~l~~~~~-------~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~---~~~dg~l~v~~~ 105 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDV-------FEGNIFKINPETKEIKRPF-VSHKANPAAIK---IHKDGRLFVCYL 105 (333)
T ss_dssp CEEEEEECTTSCEEEEET-------TTCEEEEECTTTCCEEEEE-ECSSSSEEEEE---ECTTSCEEEEEC
T ss_pred cccCcEECCCCCEEEEEC-------CCCEEEEEeCCCCcEEEEe-eCCCCCcceEE---ECCCCcEEEEeC
Confidence 678899999888666542 1357999999887754332 23345566654 333323455554
No 195
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=72.80 E-value=63 Score=30.28 Aligned_cols=119 Identities=8% Similarity=0.037 Sum_probs=69.6
Q ss_pred eEEEEEEEecCCceEEEeee-CCceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEEe-CCEEEEeecC-C
Q 011732 176 QLRLAYSTTWPGMVLAICPY-LDRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAH-FTRIAVGDCR-D 250 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~-~g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~-~n~IlvgD~~-~ 250 (478)
..+++...+...-+..++-- +|. |.++- +.+|+.++... + +.. ++..+-.+..|... ++.++|+|.. +
T Consensus 21 ~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g---~-~~~--~~~~~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 21 PAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDG---N-QQI--HATVEGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTC---C-EEE--EEECSSEEEEEEECTTSCEEEEEECTT
T ss_pred CceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCC---c-eEE--EEeCCCCceeEEEcCCCcEEEEeccCC
Confidence 35677777665566666643 456 66664 56676666543 2 222 12223346666654 3458888864 3
Q ss_pred cEEEEEEeccCceEEEEecCCCCceeEEEEeecCCeEEEeCC-CCcEEEEec
Q 011732 251 GILFYSYHEDARKLEQIYCDPSQRLVADCVLMDVDTAVVSDR-KGSIAVLSC 301 (478)
Q Consensus 251 Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~~~~l~aD~-~gNl~vl~~ 301 (478)
+..+++|+...+++..++.-+..+............++++|. .|+|+.+..
T Consensus 94 ~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred cceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence 566778887777777766543333333333344456777885 788887774
No 196
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=72.62 E-value=72 Score=30.87 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=43.0
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEeeCC---CcceeEEEEEeCCCCcEEEEEECCC
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTELNN---DTCSSDICCVDPLSGSVLSSFKLEL 64 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~---~~~~s~l~l~d~~t~~~i~~~~l~~ 64 (478)
+.+++.+..| .|+++|+.+.+.|+...... +.....|.++|..|++.+..+.+.+
T Consensus 44 ~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 44 LGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp EEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred EEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 5789999999 99999999988887643211 2234679999999999999888753
No 197
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=71.46 E-value=68 Score=30.12 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=44.9
Q ss_pred eEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEE-EeecCC---cEEEEEEeccCceEEEEecCCCCceeEEEEee
Q 011732 207 AFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIA-VGDCRD---GILFYSYHEDARKLEQIYCDPSQRLVADCVLM 282 (478)
Q Consensus 207 ~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~Il-vgD~~~---Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l 282 (478)
.+++|+... ...+.+.....+..-.++.+.++.|+ +|-.-. .-.+..|+.+.++-..++.-+.+|...++..+
T Consensus 176 ~~~~yd~~~---~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 252 (318)
T 2woz_A 176 RVFIYNPKK---GDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL 252 (318)
T ss_dssp CEEEEETTT---TEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE
T ss_pred eEEEEcCCC---CEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE
Confidence 377787765 22443332222222233445566664 553222 12456788888888888877777776666666
Q ss_pred cCCeEEE
Q 011732 283 DVDTAVV 289 (478)
Q Consensus 283 d~~~~l~ 289 (478)
++.-++.
T Consensus 253 ~~~i~v~ 259 (318)
T 2woz_A 253 AGSLYAI 259 (318)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 6544443
No 198
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=70.76 E-value=12 Score=37.44 Aligned_cols=55 Identities=7% Similarity=0.005 Sum_probs=45.1
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCC---CcceeEEEEEeCCCCcEEEEEECC
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNN---DTCSSDICCVDPLSGSVLSSFKLE 63 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~---~~~~s~l~l~d~~t~~~i~~~~l~ 63 (478)
.+.+||+|..| .|+++|+.+.+.|+...... ++....|.+||+.|++++..+.++
T Consensus 58 v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~ 115 (368)
T 1mda_H 58 TLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp EEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred EEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 46889999999 89999999988888753211 233578999999999999999876
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=70.57 E-value=84 Score=30.81 Aligned_cols=54 Identities=11% Similarity=0.141 Sum_probs=42.5
Q ss_pred eEEEeCCCCcCEEEEecCCCeEEEEEEee---CCCcceeEEEEEeCCCCcEEEEEECC
Q 011732 9 VRKFHLGGTPKKVLYHSESRLLIVMRTEL---NNDTCSSDICCVDPLSGSVLSSFKLE 63 (478)
Q Consensus 9 ir~i~L~~tp~ki~y~~~~~~~~v~~~~~---~~~~~~s~l~l~d~~t~~~i~~~~l~ 63 (478)
+.+||.|..| .|+++|+.+.+.|+.... +.+.....|.+||..|++++..+.+.
T Consensus 60 ~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~ 116 (373)
T 2mad_H 60 LGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP 116 (373)
T ss_pred EEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC
Confidence 5789999999 999999999888875321 11122467999999999999998876
No 200
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=70.22 E-value=48 Score=34.94 Aligned_cols=94 Identities=9% Similarity=0.095 Sum_probs=48.6
Q ss_pred CeEEEEeeCCCCcccceeeeec-ccceeEEEEEE--eCCEEEEeecCC---cEEEEEEeccCc-eEEEEecCCCCcee--
Q 011732 206 NAFYVCGFPNDNPQRVRRFAVG-RTRFMIMLLTA--HFTRIAVGDCRD---GILFYSYHEDAR-KLEQIYCDPSQRLV-- 276 (478)
Q Consensus 206 ~~l~v~~l~~~~~~~L~~~a~~-~~~~~i~sL~~--~~n~IlvgD~~~---Sv~ll~y~~~~~-~L~~varD~~~~~v-- 276 (478)
.+|++|++.. .+ .+.+... ....++.++.. .+++|+++..-+ ...++.|+...+ ....+.......|+
T Consensus 235 ~~l~~~d~~~--~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 235 VTVGIYHLAT--GK-TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEEEEETTT--TE-EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred eEEEEEECCC--Cc-eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 3477777754 11 2222111 12234555554 467787754332 356677777666 55555443334343
Q ss_pred -EEEEeec--CC-eEEEeCCCCcEEEEecC
Q 011732 277 -ADCVLMD--VD-TAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 277 -ta~~~ld--~~-~~l~aD~~gNl~vl~~~ 302 (478)
.++.+.. ++ .++.++++|.+.++.++
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 3445543 33 55566777766666654
No 201
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=69.96 E-value=1.1e+02 Score=32.06 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=34.6
Q ss_pred EEEEecCCCeEEEEEEeeC-----------------CCcceeEEEEEeCCCCcEEEEEECCCCC
Q 011732 20 KVLYHSESRLLIVMRTELN-----------------NDTCSSDICCVDPLSGSVLSSFKLELGE 66 (478)
Q Consensus 20 ki~y~~~~~~~~v~~~~~~-----------------~~~~~s~l~l~d~~t~~~i~~~~l~~~E 66 (478)
-.+|.|+.+.+.|.+.... +..+..+|.-+|+.|++.+.++++.+++
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d 313 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPND 313 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTC
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCC
Confidence 4688998888888764211 1223478999999999999999987553
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=69.87 E-value=67 Score=29.82 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=66.4
Q ss_pred ecCCceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceeeeecc---cceeEEEEEEe-CCEEEEeecC---------
Q 011732 184 TWPGMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGR---TRFMIMLLTAH-FTRIAVGDCR--------- 249 (478)
Q Consensus 184 ~~~G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~---~~~~i~sL~~~-~n~IlvgD~~--------- 249 (478)
...+.|.++..-. |+ |+++.+..|++|++.. ..++.+.... ....+..+.+. ++.+++|+..
T Consensus 51 ~~~~~~~~i~~~~dG~-l~v~~~~~l~~~d~~~---g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~ 126 (297)
T 3g4e_A 51 TMDAPVSSVALRQSGG-YVATIGTKFCALNWKE---QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLE 126 (297)
T ss_dssp ECSSCEEEEEEBTTSS-EEEEETTEEEEEETTT---TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCC
T ss_pred eCCCceEEEEECCCCC-EEEEECCeEEEEECCC---CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccccccc
Confidence 4567888888765 56 8888899999998864 2243333211 12345666654 3568888853
Q ss_pred -CcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCC-CCcEEEEecC
Q 011732 250 -DGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDR-KGSIAVLSCS 302 (478)
Q Consensus 250 -~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~-~gNl~vl~~~ 302 (478)
..-.++++++. +++..+..+.. ....+.+- |...++++|. .+.|+.+.++
T Consensus 127 ~~~~~l~~~d~~-g~~~~~~~~~~--~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 127 RHQGALYSLFPD-HHVKKYFDQVD--ISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp TTCEEEEEECTT-SCEEEEEEEES--BEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred CCCcEEEEEECC-CCEEEEeeccc--cccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 34578888764 44544443321 12233332 3335666665 5678888774
No 203
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=68.59 E-value=94 Score=30.59 Aligned_cols=111 Identities=11% Similarity=0.016 Sum_probs=61.5
Q ss_pred cCCceEEEeeeC-CceEEEEeC----CeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEE-EeecCCcEEEEE
Q 011732 185 WPGMVLAICPYL-DRYFLASAG----NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIA-VGDCRDGILFYS 256 (478)
Q Consensus 185 ~~G~V~ai~~~~-g~~Ll~avg----~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~Il-vgD~~~Sv~ll~ 256 (478)
..+.|.+++--. |++|+.+.. ..|++|++... + .+.+.... ..+.++.. .+.+|+ .+..-....++.
T Consensus 177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--~-~~~l~~~~--~~~~~~~~spdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--A-VRQVASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--C-EEEEECCS--SCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--c-EEEeecCC--CcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence 457788877543 565665553 37999998752 2 23222222 23444443 467777 444444556667
Q ss_pred EeccCceEEEEecCCCCceeEEEEeecCC-eE-EEeCCCC--cEEEEecC
Q 011732 257 YHEDARKLEQIYCDPSQRLVADCVLMDVD-TA-VVSDRKG--SIAVLSCS 302 (478)
Q Consensus 257 y~~~~~~L~~varD~~~~~vta~~~ld~~-~~-l~aD~~g--Nl~vl~~~ 302 (478)
|+...+++..+... ...++++.+-.++ .+ .+++.+| .|++++..
T Consensus 252 ~d~~~~~~~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 252 MDLASGQIRQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp EETTTCCEEECCCC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred EECCCCCEEeCcCC--CCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 77766666655443 3456677765343 33 3455556 55555543
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=68.33 E-value=66 Score=28.73 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=23.2
Q ss_pred eCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCc
Q 011732 13 HLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS 55 (478)
Q Consensus 13 ~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~ 55 (478)
.++..|+.|+++++.++|+++.. ....|..+|+.+..
T Consensus 21 ~~~~~p~~i~~~~~g~l~v~~~~------~~~~i~~~~~~~~~ 57 (270)
T 1rwi_B 21 DFRLSPSGVAVDSAGNVYVTSEG------MYGRVVKLATGSTG 57 (270)
T ss_dssp SSCCCEEEEEECTTCCEEEEECS------SSCEEEEECC----
T ss_pred cccCCccceEECCCCCEEEEccC------CCCcEEEecCCCcc
Confidence 34448999999999987763422 13578888887654
No 205
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=63.68 E-value=1.4e+02 Score=32.08 Aligned_cols=108 Identities=6% Similarity=0.059 Sum_probs=57.7
Q ss_pred CceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeec-ccc-eeEEEEEE-eCCEEEEeecCCcEEEEEEeccCce
Q 011732 187 GMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVG-RTR-FMIMLLTA-HFTRIAVGDCRDGILFYSYHEDARK 263 (478)
Q Consensus 187 G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~-~~~-~~i~sL~~-~~n~IlvgD~~~Sv~ll~y~~~~~~ 263 (478)
..|.+|..-.+++|-++....|..|+...+ + ++..... ..+ ..|.+|.. .++.|++|+- +++ ++|+...++
T Consensus 88 n~I~~i~~d~~g~lWigT~~Gl~~yd~~~~--~-f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~-~gl--~~~~~~~~~ 161 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWIGTRDGLSRYDEEKD--I-FQNFFYEKNGKHLQVNGIEEISPEQLLISTP-EGL--IMFDIKESK 161 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSCEEEEETTTT--E-EEEECCEETTEECCCCEEEEEETTEEEEEET-TEE--EEEETTTTE
T ss_pred cceeEEEECCCCCEEEEeCCchheeCCCCC--e-EEeccccccCCCceEEEEEECCCCCEEEEEC-Cce--EEEECCCCE
Confidence 457788766654488898888888886542 2 3322111 001 11556644 4778889886 664 567777777
Q ss_pred EEEEecCCCCce-eEEEEeecCCeEEEeCCCCcEEEEe
Q 011732 264 LEQIYCDPSQRL-VADCVLMDVDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 264 L~~varD~~~~~-vta~~~ld~~~~l~aD~~gNl~vl~ 300 (478)
+..+........ +.++..-.++.+.++-..+.|+.+.
T Consensus 162 ~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~ 199 (795)
T 4a2l_A 162 FIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYS 199 (795)
T ss_dssp EECSSSCHHHHTCCEEEEEEETTEEEEEESSSCEEEEE
T ss_pred EEeccCCCCCCcceEEEEECCCCCEEEEECCCCEEEEe
Confidence 765432111111 4444332344444443333466555
No 206
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=63.53 E-value=1e+02 Score=29.26 Aligned_cols=80 Identities=5% Similarity=-0.118 Sum_probs=39.2
Q ss_pred CeEEEEeeCCCCcccceeeeecccceeE-EEEEEeCCEEE-Eee------cCCcEEEEEEeccCceEEEEecCCCCce--
Q 011732 206 NAFYVCGFPNDNPQRVRRFAVGRTRFMI-MLLTAHFTRIA-VGD------CRDGILFYSYHEDARKLEQIYCDPSQRL-- 275 (478)
Q Consensus 206 ~~l~v~~l~~~~~~~L~~~a~~~~~~~i-~sL~~~~n~Il-vgD------~~~Sv~ll~y~~~~~~L~~varD~~~~~-- 275 (478)
+.+.+|+... ...+.++....+... .++.+.++.|+ +|- ....+..+.++++.++-..++.-+.++.
T Consensus 168 ~~v~~yd~~~---~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPST---QQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTT---TEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCC---CcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 5688888765 224444432222112 44555677765 442 2344555554457777777765555543
Q ss_pred eEEEEeecCCeEE
Q 011732 276 VADCVLMDVDTAV 288 (478)
Q Consensus 276 vta~~~ld~~~~l 288 (478)
..++..+++.-++
T Consensus 245 ~~~~~~~~~~iyv 257 (357)
T 2uvk_A 245 GGFAGISNDSLIF 257 (357)
T ss_dssp SCEEEEETTEEEE
T ss_pred cceEEEECCEEEE
Confidence 3334445554333
No 207
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=61.61 E-value=7.3 Score=39.00 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=43.8
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceE
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGK 69 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~ 69 (478)
.+++|+++..|..|+++|+.+.++|.+... ...|-+||..|++++.++.....-..+
T Consensus 306 vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~-----~~~VsVID~~t~kvv~~I~vg~~P~~i 362 (368)
T 1mda_H 306 TSGPISNGHDSDAIIAAQDGASDNYANSAG-----TEVLDIYDAASDQDQSSVELDKGPESL 362 (368)
T ss_dssp EEECCEEEEEECEEEECCSSSCEEEEEETT-----TTEEEEEESSSCEEEEECCCCSCCCEE
T ss_pred EEEEEECCCCcceEEECCCCCEEEEEccCC-----CCeEEEEECCCCcEEEEEECCCCCCEE
Confidence 478899999999999999998655554311 358999999999999887765544433
No 208
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=61.47 E-value=1e+02 Score=28.40 Aligned_cols=101 Identities=10% Similarity=0.091 Sum_probs=52.6
Q ss_pred ceEEEeee-CCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeC-CEEEEeecCCcEEEEEEeccCceEE
Q 011732 188 MVLAICPY-LDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHF-TRIAVGDCRDGILFYSYHEDARKLE 265 (478)
Q Consensus 188 ~V~ai~~~-~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~-n~IlvgD~~~Sv~ll~y~~~~~~L~ 265 (478)
.+.++..- +|. |.++. ..|+.++ .. ... +.... .....+.++...+ +.|++|+.-.++..+ ++....+.
T Consensus 178 ~~~~~~~d~~g~-l~v~t-~~l~~~d-~~-g~~-~~~~~--~~~~~~~~~~~~~~g~l~v~t~~~gl~~~--~~~g~~~~ 248 (330)
T 3hxj_A 178 ITSAASIGKDGT-IYFGS-DKVYAIN-PD-GTE-KWNFY--AGYWTVTRPAISEDGTIYVTSLDGHLYAI--NPDGTEKW 248 (330)
T ss_dssp CCSCCEECTTCC-EEEES-SSEEEEC-TT-SCE-EEEEC--CSSCCCSCCEECTTSCEEEEETTTEEEEE--CTTSCEEE
T ss_pred ceeeeEEcCCCE-EEEEe-CEEEEEC-CC-CcE-EEEEc--cCCcceeceEECCCCeEEEEcCCCeEEEE--CCCCCEeE
Confidence 34444443 455 77777 7788887 32 121 22111 1112344444454 489999887776554 55555554
Q ss_pred EEecCCCCceeEEEEeec-CCeEEEeCCCCcEEEEe
Q 011732 266 QIYCDPSQRLVADCVLMD-VDTAVVSDRKGSIAVLS 300 (478)
Q Consensus 266 ~varD~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~ 300 (478)
....... ...+. .++ ++.+.++..+|.|+.+.
T Consensus 249 ~~~~~~~--~~~~~-~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 249 RFKTGKR--IESSP-VIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEECSSC--CCSCC-EECTTSCEEEECTTCEEEEEC
T ss_pred EeeCCCC--ccccc-eEcCCCeEEEecCCCCEEEEC
Confidence 4432211 11112 234 45666677777777775
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=60.45 E-value=1.4e+02 Score=29.60 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=23.3
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEE
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLS 58 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~ 58 (478)
.|.-|+++|+.++|++-. ....|+.+|+.+.++..
T Consensus 132 ~P~~la~d~~g~lyv~d~-------~~~~I~~id~~~g~~~~ 166 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQR-------DDPRVRLISVDDNKVTT 166 (409)
T ss_dssp CEEEEEECSTTEEEEEET-------TTTEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCEEEEec-------CCCcEEEEECCCCEEEE
Confidence 577888887777555532 13578888888766543
No 210
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=60.11 E-value=1e+02 Score=30.70 Aligned_cols=117 Identities=11% Similarity=0.007 Sum_probs=70.7
Q ss_pred EecCCceEEEeeeC-CceEEE---Ee--CCeEEEEeeCCC-----Cc-ccceeeeecc-cceeEEEEEEe---CCEEEEe
Q 011732 183 TTWPGMVLAICPYL-DRYFLA---SA--GNAFYVCGFPND-----NP-QRVRRFAVGR-TRFMIMLLTAH---FTRIAVG 246 (478)
Q Consensus 183 ~~~~G~V~ai~~~~-g~~Ll~---av--g~~l~v~~l~~~-----~~-~~L~~~a~~~-~~~~i~sL~~~---~n~Ilvg 246 (478)
..+.++|++|+--. |++|++ +. ...|++|++... .. +.+....... ....|.++... +++++.|
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 45678899988554 564553 22 345899988641 00 1111122211 23457777654 5688889
Q ss_pred ecCCcEEEEEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCCCCcEEEEecC
Q 011732 247 DCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 247 D~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~~gNl~vl~~~ 302 (478)
..-..|.++..+.. ... .........++++.+- +...++++..+|.+.+++..
T Consensus 169 s~Dg~v~iwD~~~~--~~~-~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 169 LADGSIAVLQVTET--VKV-CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp ETTSCEEEEEESSS--EEE-EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred ECCCeEEEEEcCCC--cce-eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 88888888765433 222 2222344567777764 44578888899999998764
No 211
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=59.72 E-value=1.9e+02 Score=30.94 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=34.7
Q ss_pred CEEEEecCCCeEEEEEEee------------CCCcceeEEEEEeCCCCcEEEEEECCCC
Q 011732 19 KKVLYHSESRLLIVMRTEL------------NNDTCSSDICCVDPLSGSVLSSFKLELG 65 (478)
Q Consensus 19 ~ki~y~~~~~~~~v~~~~~------------~~~~~~s~l~l~d~~t~~~i~~~~l~~~ 65 (478)
..++|+|+.+.+.+.+... ....+.++|..+|+.|++.+.+|.+.++
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~ 304 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG 304 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC
Confidence 3689999998887775432 1112345799999999999999988654
No 212
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=59.20 E-value=27 Score=34.02 Aligned_cols=55 Identities=9% Similarity=0.136 Sum_probs=42.0
Q ss_pred eeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCC--cEEEEEECCCCCceEEEE
Q 011732 8 NVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSG--SVLSSFKLELGETGKSME 72 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~--~~i~~~~l~~~E~~~s~~ 72 (478)
.+++++++. |..|+++|+.+.+++.. + ..|.+||..|+ +++.++ ...++.+..+.
T Consensus 298 ~v~~i~~~~-p~~ia~spdg~~l~v~n-------~-~~v~v~D~~t~~l~~~~~i-~~~G~~P~~~~ 354 (361)
T 2oiz_A 298 RVARIPGRD-ALSMTIDQQRNLMLTLD-------G-GNVNVYDISQPEPKLLRTI-EGAAEASLQVQ 354 (361)
T ss_dssp EEEEEECTT-CCEEEEETTTTEEEEEC-------S-SCEEEEECSSSSCEEEEEE-TTSCSSEEEEE
T ss_pred EEEEEecCC-eeEEEECCCCCEEEEeC-------C-CeEEEEECCCCcceeeEEe-ccCCCCcEEEE
Confidence 467899999 99999999999666542 1 68999999999 888775 23466665543
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=55.00 E-value=1.4e+02 Score=28.09 Aligned_cols=84 Identities=20% Similarity=0.137 Sum_probs=45.6
Q ss_pred EEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecC
Q 011732 10 RKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLS 89 (478)
Q Consensus 10 r~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~ 89 (478)
+.+.+...|..|++.|+.+.++.. . ..|.++|+.+++.......+.+.....+..+.+..+--+.+|+...
T Consensus 84 ~~~~~~~~v~~i~~~~dg~l~v~~---~------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~ 154 (326)
T 2ghs_A 84 TVHALPFMGSALAKISDSKQLIAS---D------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGR 154 (326)
T ss_dssp EEEECSSCEEEEEEEETTEEEEEE---T------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEET
T ss_pred EEEECCCcceEEEEeCCCeEEEEE---C------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCC
Confidence 445666678888888887755532 1 2488899988775433333222211223334444332255676531
Q ss_pred CCCCCCCCCCCcCcceEEEEEE
Q 011732 90 SGPAIMPSGEAESTKGRLIVLC 111 (478)
Q Consensus 90 ~g~~~~~~~e~~~~~Gri~v~~ 111 (478)
. .....|+|+.++
T Consensus 155 ~---------~~~~~~~l~~~~ 167 (326)
T 2ghs_A 155 K---------AETGAGSIYHVA 167 (326)
T ss_dssp T---------CCTTCEEEEEEE
T ss_pred c---------CCCCceEEEEEe
Confidence 1 123467777776
No 214
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=54.09 E-value=1.5e+02 Score=28.00 Aligned_cols=119 Identities=8% Similarity=-0.038 Sum_probs=74.9
Q ss_pred ceEEEEEEEecCCc--eEEEeeeCCceEEEEeC----CeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeec
Q 011732 175 WQLRLAYSTTWPGM--VLAICPYLDRYFLASAG----NAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDC 248 (478)
Q Consensus 175 ~~l~l~~~~~~~G~--V~ai~~~~g~~Ll~avg----~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~ 248 (478)
...+++.+.++.+. ...|.--.++.|.++.| ++|.+++... .+.+..+.. ....+...+...++++++++-
T Consensus 7 ~~~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t--g~v~~~i~l-~~~~fgeGi~~~g~~lyv~t~ 83 (266)
T 2iwa_A 7 YIVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQT--GKVENIHKM-DDSYFGEGLTLLNEKLYQVVW 83 (266)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTT--CCEEEEEEC-CTTCCEEEEEEETTEEEEEET
T ss_pred cCceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCC--CCEEEEEec-CCCcceEEEEEeCCEEEEEEe
Confidence 56788899998865 46777555234888875 5799999875 232333222 233345567777999999998
Q ss_pred CCcEEEEEEeccCceEE-EEecC-CCCceeEEEEeecCCeEEEeCCCCcEEEEec
Q 011732 249 RDGILFYSYHEDARKLE-QIYCD-PSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 249 ~~Sv~ll~y~~~~~~L~-~varD-~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~ 301 (478)
..+. ++.|+....++. .+.-. +. -|. +. -|...++++|..+.+++++-
T Consensus 84 ~~~~-v~viD~~t~~v~~~i~~g~~~-g~g--lt-~Dg~~l~vs~gs~~l~viD~ 133 (266)
T 2iwa_A 84 LKNI-GFIYDRRTLSNIKNFTHQMKD-GWG--LA-TDGKILYGSDGTSILYEIDP 133 (266)
T ss_dssp TCSE-EEEEETTTTEEEEEEECCSSS-CCE--EE-ECSSSEEEECSSSEEEEECT
T ss_pred cCCE-EEEEECCCCcEEEEEECCCCC-eEE--EE-ECCCEEEEECCCCeEEEEEC
Confidence 7776 444777654333 33222 22 222 22 26667888898777777753
No 215
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=51.96 E-value=88 Score=33.83 Aligned_cols=105 Identities=13% Similarity=0.160 Sum_probs=55.3
Q ss_pred eEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccc-ee-EEEEEE-eCCEEEEeecCCcEEEEEEeccCceEE
Q 011732 189 VLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTR-FM-IMLLTA-HFTRIAVGDCRDGILFYSYHEDARKLE 265 (478)
Q Consensus 189 V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~-~~-i~sL~~-~~n~IlvgD~~~Sv~ll~y~~~~~~L~ 265 (478)
|.+|..-.++.|.++.++.|+.|+.+. ..++.... ..+ .. |.+|.. .++.|+||..-.++. +|+...+++.
T Consensus 133 i~~i~~d~~g~lwi~t~~gl~~~~~~~---~~~~~~~~-~~~~~~~i~~i~~d~~g~lwigt~~~Gl~--~~~~~~~~~~ 206 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEGLIMFDIKE---SKFIDDSF-STAMHKTIASTLYRQGDQIYIGTSTDGLY--TYSITQKTFE 206 (795)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTT---TEEECSSS-CHHHHTCCEEEEEEETTEEEEEESSSCEE--EEETTTCCEE
T ss_pred EEEEEECCCCCEEEEECCceEEEECCC---CEEEeccC-CCCCCcceEEEEECCCCCEEEEECCCCEE--EEeCCCCeEE
Confidence 777876644338888888888887654 22332111 011 11 555554 478899998777754 5666666665
Q ss_pred EEecCCCCceeEEEEeecCCe-EEEeCCCCcEEEEe
Q 011732 266 QIYCDPSQRLVADCVLMDVDT-AVVSDRKGSIAVLS 300 (478)
Q Consensus 266 ~varD~~~~~vta~~~ld~~~-~l~aD~~gNl~vl~ 300 (478)
.+........+.++..-.++. +++++..| |+.+.
T Consensus 207 ~~~~~~~~~~i~~i~~d~~g~lwigt~~~G-l~~~~ 241 (795)
T 4a2l_A 207 KVIPILGTKQIQAILQQSPTRIWVATEGAG-LFLIN 241 (795)
T ss_dssp ECC----CCCEEEEEEEETTEEEEEEBSSC-EEEEE
T ss_pred EecCCCCCCeeEEEEEcCCCCEEEEECCCC-eEEEe
Confidence 543222223344443323333 33433333 55544
No 216
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=51.20 E-value=2.4e+02 Score=29.58 Aligned_cols=81 Identities=9% Similarity=0.041 Sum_probs=45.8
Q ss_pred cCEEEEecCCCeEEEEEEeeCC--------------------------CcceeEEEEEeCCC-CcEEEEEECC--CCCce
Q 011732 18 PKKVLYHSESRLLIVMRTELNN--------------------------DTCSSDICCVDPLS-GSVLSSFKLE--LGETG 68 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~--------------------------~~~~s~l~l~d~~t-~~~i~~~~l~--~~E~~ 68 (478)
++.+.++|+++.++++..+... ......|.++|..+ ++.... ... ....+
T Consensus 211 ~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~ 289 (741)
T 2ecf_A 211 HTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWI-DLGKEQDIYL 289 (741)
T ss_dssp CCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEE-CCCSCSSEEE
T ss_pred ccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEe-cCCCCcceEE
Confidence 4779999999988887654311 01234888999888 775322 222 22333
Q ss_pred EEEEEEEECCeeEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 69 KSMELVRVGHEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 69 ~s~~~~~l~~~~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
.++. + -++ .+|+++..... ...++|+++++.
T Consensus 290 ~~~~-~-pDg-~~l~~~~~~~~-----------~~~~~i~~~d~~ 320 (741)
T 2ecf_A 290 ARVN-W-RDP-QHLSFQRQSRD-----------QKKLDLVEVTLA 320 (741)
T ss_dssp EEEE-E-EET-TEEEEEEEETT-----------SSEEEEEEEETT
T ss_pred EEEE-e-CCC-CEEEEEEeccc-----------CCeEEEEEEECC
Confidence 3332 3 333 56666554211 235777777764
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=48.63 E-value=1.7e+02 Score=27.05 Aligned_cols=40 Identities=8% Similarity=0.006 Sum_probs=25.1
Q ss_pred eEEEeCCC-CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCc
Q 011732 9 VRKFHLGG-TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGS 55 (478)
Q Consensus 9 ir~i~L~~-tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~ 55 (478)
++++.-+. .+.-.+|+|+.+.++++... ...|..+++ +++
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~------~~~i~~~~~-~g~ 77 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLV------GRRVLGWRE-DGT 77 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETT------TTEEEEEET-TSC
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECC------CCEEEEEeC-CCC
Confidence 44455444 57788999998855555321 246777787 444
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=47.97 E-value=17 Score=37.06 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=39.1
Q ss_pred eeEEEeCCCCcCEEEEecCCC-eEEEEEEeeCCCcceeEEEEEeCCCCcEEEEE
Q 011732 8 NVRKFHLGGTPKKVLYHSESR-LLIVMRTELNNDTCSSDICCVDPLSGSVLSSF 60 (478)
Q Consensus 8 ~ir~i~L~~tp~ki~y~~~~~-~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~ 60 (478)
.+++|+++..|..|+++|+.+ .+++... . ...|-+||..|++++.++
T Consensus 362 vv~~I~vg~~P~gia~spDg~~~lyv~n~-~-----s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 362 RINKIELGHEIDSINVSQDAEPLLYALSA-G-----TQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEEEEECEEEECCSSSCEEEEEET-T-----TTEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCcCeEEEccCCCEEEEEEcC-C-----CCeEEEEECCCCCEEEEe
Confidence 578999999999999999999 6665532 1 358999999999999886
No 219
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=47.33 E-value=2.9e+02 Score=29.52 Aligned_cols=108 Identities=10% Similarity=0.027 Sum_probs=60.8
Q ss_pred CceEEEeeeC-CceEEEEe-CCeEEEEeeCCCCcccceeee--ecccceeEEEEEEe-CCEEEEeecCCcEEEEEEeccC
Q 011732 187 GMVLAICPYL-DRYFLASA-GNAFYVCGFPNDNPQRVRRFA--VGRTRFMIMLLTAH-FTRIAVGDCRDGILFYSYHEDA 261 (478)
Q Consensus 187 G~V~ai~~~~-g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a--~~~~~~~i~sL~~~-~n~IlvgD~~~Sv~ll~y~~~~ 261 (478)
..|++|+.-+ |. |-+|. +..|+.|+... ..++... .....-.|.+|... ++.|++|....++ +.|++..
T Consensus 363 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~---~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl--~~~~~~~ 436 (781)
T 3v9f_A 363 KVVSSVCDDGQGK-LWIGTDGGGINVFENGK---RVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNI--SYYNTRL 436 (781)
T ss_dssp SCEEEEEECTTSC-EEEEEBSSCEEEEETTE---EEEECC-----CCCSBEEEEEECTTSCEEEEETTEEE--EEECSSS
T ss_pred cceEEEEEcCCCC-EEEEeCCCcEEEEECCC---CeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCE--EEEcCCC
Confidence 5689998876 55 88887 77788887653 1122110 00112246677654 6789999876765 4566766
Q ss_pred ceEEEEecC-CCCceeEEEEeecCCeEEEeCCCCcEEEEec
Q 011732 262 RKLEQIYCD-PSQRLVADCVLMDVDTAVVSDRKGSIAVLSC 301 (478)
Q Consensus 262 ~~L~~varD-~~~~~vta~~~ld~~~~l~aD~~gNl~vl~~ 301 (478)
+++..+..+ .....+.++..-.++.+.++.. +.|+.+..
T Consensus 437 ~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~ 476 (781)
T 3v9f_A 437 KKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDL 476 (781)
T ss_dssp CEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEES
T ss_pred CcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeC
Confidence 777766543 1223444443322333333333 45666653
No 220
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=46.24 E-value=2.5e+02 Score=29.27 Aligned_cols=205 Identities=9% Similarity=-0.050 Sum_probs=0.0
Q ss_pred cCEEEEecCCCeEEEEEEeeCC--CcceeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCCC
Q 011732 18 PKKVLYHSESRLLIVMRTELNN--DTCSSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAIM 95 (478)
Q Consensus 18 p~ki~y~~~~~~~~v~~~~~~~--~~~~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~~ 95 (478)
+..++++|+.+.++....+... ......+.++|..+++...-......+.......+.-+++.+..+.
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~---------- 132 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF---------- 132 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE----------
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEE----------
Q ss_pred CCCCCcCcceEEEEEEEEecccCCCCCccccccCCCCCccCCCceeeccccccccccCccCCCCCCCCcCCccccccccc
Q 011732 96 PSGEAESTKGRLIVLCIEHMQNSDCGSMTFCSKAGSSSQRTSPFREIVGYATEQLSSSSLCSSPDDASCDGIKLEETETW 175 (478)
Q Consensus 96 ~~~e~~~~~Gri~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 175 (478)
.+.|+++++. +.
T Consensus 133 --------~~~i~~~~~~------------------------------------------------------------~g 144 (723)
T 1xfd_A 133 --------ENNIYYCAHV------------------------------------------------------------GK 144 (723)
T ss_dssp --------TTEEEEESSS------------------------------------------------------------SS
T ss_pred --------CCeEEEEECC------------------------------------------------------------CC
Q ss_pred eEEEEEEEecCCc------------------eEEEeeeCCceEEEEeCC-------------------------------
Q 011732 176 QLRLAYSTTWPGM------------------VLAICPYLDRYFLASAGN------------------------------- 206 (478)
Q Consensus 176 ~l~l~~~~~~~G~------------------V~ai~~~~g~~Ll~avg~------------------------------- 206 (478)
+.+.+......+. -..--+=.|++|+++...
T Consensus 145 ~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 224 (723)
T 1xfd_A 145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE 224 (723)
T ss_dssp CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC
Q ss_pred ----eEEEEeeCCCCcccceeeeec------ccceeEEEEEEeCCEEEEeecCCc--EEEEEEeccCceEEEEecCCCCc
Q 011732 207 ----AFYVCGFPNDNPQRVRRFAVG------RTRFMIMLLTAHFTRIAVGDCRDG--ILFYSYHEDARKLEQIYCDPSQR 274 (478)
Q Consensus 207 ----~l~v~~l~~~~~~~L~~~a~~------~~~~~i~sL~~~~n~IlvgD~~~S--v~ll~y~~~~~~L~~varD~~~~ 274 (478)
+|++|+... .+..+.+... .....-...+..+.+|+++....+ ..++.|+...++...+.......
T Consensus 225 ~~~~~l~~~d~~~--~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 302 (723)
T 1xfd_A 225 NPSISLHVIGLNG--PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEA 302 (723)
T ss_dssp CCEEEEEEEESSS--SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCeeEEEEEECCC--CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCC
Q ss_pred eeE----EEEeecCCeEEE---eCCCC----cEEEEecC
Q 011732 275 LVA----DCVLMDVDTAVV---SDRKG----SIAVLSCS 302 (478)
Q Consensus 275 ~vt----a~~~ld~~~~l~---aD~~g----Nl~vl~~~ 302 (478)
|+. +..+-.++..|+ ++.+| +..++.++
T Consensus 303 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 303 WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
No 221
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=44.63 E-value=3.2e+02 Score=29.20 Aligned_cols=77 Identities=6% Similarity=0.069 Sum_probs=48.3
Q ss_pred CceEEEeeeC--CceEEEEe-CCeEEEEeeCCCCcccceeeeecc---c-ceeEEEEEE-eCCEEEEeecCCcEEEEEEe
Q 011732 187 GMVLAICPYL--DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGR---T-RFMIMLLTA-HFTRIAVGDCRDGILFYSYH 258 (478)
Q Consensus 187 G~V~ai~~~~--g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~---~-~~~i~sL~~-~~n~IlvgD~~~Sv~ll~y~ 258 (478)
..|.+|..-. ++.|.++. +..|+.|+.+. ..++...... . ...|.+|.. .++.|++|+...++ ++|+
T Consensus 115 ~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~---~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl--~~~~ 189 (781)
T 3v9f_A 115 NDVTHITSSVQAGKGLWVCTYYRGIEYLDIAT---GKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGL--SILS 189 (781)
T ss_dssp SCEEEEEECSSTTSEEEEEESSSCEEEEETTT---TEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEE--EEEE
T ss_pred CcceEEEecCccCCCEEEEECCCCeeEEECCC---CeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCe--EEEc
Confidence 3578887765 33388887 78898888754 2233321100 1 124666665 48899999877675 5577
Q ss_pred ccCceEEEEe
Q 011732 259 EDARKLEQIY 268 (478)
Q Consensus 259 ~~~~~L~~va 268 (478)
...+++..+.
T Consensus 190 ~~~~~~~~~~ 199 (781)
T 3v9f_A 190 LNDKSVKHFV 199 (781)
T ss_dssp TTTTEEEEEC
T ss_pred CCCCceEeee
Confidence 7777776654
No 222
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=44.36 E-value=3e+02 Score=28.84 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=47.2
Q ss_pred CCeeeEEEeCCCCcCEEEEec-CCCeEEEEEEeeCC----CcceeEEEEEeCCC--CcEEEEEECCCCCceEEEEEEEEC
Q 011732 5 KRLNVRKFHLGGTPKKVLYHS-ESRLLIVMRTELNN----DTCSSDICCVDPLS--GSVLSSFKLELGETGKSMELVRVG 77 (478)
Q Consensus 5 ~~l~ir~i~L~~tp~ki~y~~-~~~~~~v~~~~~~~----~~~~s~l~l~d~~t--~~~i~~~~l~~~E~~~s~~~~~l~ 77 (478)
++|.. ..|+...+...+..| ..++|+++...... ......+.++|+.+ |+.+....-+....+.+ .+.+.
T Consensus 176 ~~W~~-~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~--~~~~~ 252 (656)
T 1k3i_A 176 GRWGP-TIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG--ISMDG 252 (656)
T ss_dssp CEEEE-EEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE--EEECT
T ss_pred Ceeee-eccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcccc--ccCCC
Confidence 34553 357777888999998 77888887654321 11235799999977 45554443333333322 23334
Q ss_pred CeeEEEEe
Q 011732 78 HEQVLVVG 85 (478)
Q Consensus 78 ~~~~l~VG 85 (478)
+..++++|
T Consensus 253 ~g~lyv~G 260 (656)
T 1k3i_A 253 NGQIVVTG 260 (656)
T ss_dssp TSCEEEEC
T ss_pred CCCEEEeC
Confidence 56777777
No 223
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=43.19 E-value=1.9e+02 Score=26.17 Aligned_cols=102 Identities=4% Similarity=-0.020 Sum_probs=51.1
Q ss_pred CceEEEEe--CCeEEEEeeCCCCcccceee-eecccc----eeEEEEEEe-CCEEEEeecCCcEEEEEEeccCceEEEEe
Q 011732 197 DRYFLASA--GNAFYVCGFPNDNPQRVRRF-AVGRTR----FMIMLLTAH-FTRIAVGDCRDGILFYSYHEDARKLEQIY 268 (478)
Q Consensus 197 g~~Ll~av--g~~l~v~~l~~~~~~~L~~~-a~~~~~----~~i~sL~~~-~n~IlvgD~~~Sv~ll~y~~~~~~L~~va 268 (478)
|++|.++. +.+|++|++..+. + +... .+...+ ..+..|... ++.|++++...+ .+.+|+++.+++....
T Consensus 187 g~~l~v~~~~~~~i~~~~~~~~g-~-~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~-~i~~~d~~~g~~~~~~ 263 (314)
T 1pjx_A 187 PYQLIVAETPTKKLWSYDIKGPA-K-IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDGGQPKMRI 263 (314)
T ss_dssp EEEEEEEETTTTEEEEEEEEETT-E-EEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTCBSCSEEE
T ss_pred CCEEEEEECCCCeEEEEECCCCC-c-cccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC-EEEEEcCCCCcEeEEE
Confidence 33465653 5679999876321 1 2211 111111 345556554 357888876543 3455676633332221
Q ss_pred cCCCCceeEEEEeecCCe-EE-EeCCCCcEEEEecC
Q 011732 269 CDPSQRLVADCVLMDVDT-AV-VSDRKGSIAVLSCS 302 (478)
Q Consensus 269 rD~~~~~vta~~~ld~~~-~l-~aD~~gNl~vl~~~ 302 (478)
..+ ..+++++.+-.++. +. +...++.|+.++..
T Consensus 264 ~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 264 RCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eCC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 211 25666777622222 44 44456778887754
No 224
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=42.97 E-value=2.1e+02 Score=26.67 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=22.0
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCC
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSG 54 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~ 54 (478)
.|+-|+++|+.++|+.-. ....|+.+|+...
T Consensus 92 ~p~gia~d~~g~l~v~d~-------~~~~v~~~~~~g~ 122 (329)
T 3fvz_A 92 LPHGLSIDTDGNYWVTDV-------ALHQVFKLDPHSK 122 (329)
T ss_dssp SEEEEEECTTSCEEEEET-------TTTEEEEECTTCS
T ss_pred CceEEEECCCCCEEEEEC-------CCCEEEEEeCCCC
Confidence 688999999988665431 1357889998643
No 225
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=41.14 E-value=3.3e+02 Score=28.36 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=42.8
Q ss_pred CeeeEEEeCCCCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEEEEC
Q 011732 6 RLNVRKFHLGGTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSSFKL 62 (478)
Q Consensus 6 ~l~ir~i~L~~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~~~l 62 (478)
.+.+..|+.+..|+-+.++|+.+.++|++.. ...|.++|..|++++..+..
T Consensus 332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~------sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 332 NLKTTEISAERFLHDGGLDGSHRYFITAANA------RNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEEEEC
T ss_pred cceeeeeeccccccCceECCCCCEEEEEeCC------CCeEEEEECCCCcEEEEEec
Confidence 4678889999999999999999988888642 34799999999998888776
No 226
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=38.97 E-value=2.2e+02 Score=28.05 Aligned_cols=109 Identities=11% Similarity=0.034 Sum_probs=56.3
Q ss_pred eEEEeeeC-CceEEEEe--CCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCce-E
Q 011732 189 VLAICPYL-DRYFLASA--GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARK-L 264 (478)
Q Consensus 189 V~ai~~~~-g~~Ll~av--g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~-L 264 (478)
+..|+--. |. |.++- +++|++|+... ..+..+........ ..+...+++++++|....-.++.|+..... .
T Consensus 133 P~~la~d~~g~-lyv~d~~~~~I~~id~~~---g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 133 MWGIAAVGNNT-VLAYQRDDPRVRLISVDD---NKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp EEEEEECSTTE-EEEEETTTTEEEEEETTT---TEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred ceEEEEeCCCC-EEEEecCCCcEEEEECCC---CEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 33444333 45 65554 36788887764 22443332211122 445556789999998664355666665432 2
Q ss_pred EEEec--CCCCceeEEEEeec-CCeEEEeCCCCcEEEEecC
Q 011732 265 EQIYC--DPSQRLVADCVLMD-VDTAVVSDRKGSIAVLSCS 302 (478)
Q Consensus 265 ~~var--D~~~~~vta~~~ld-~~~~l~aD~~gNl~vl~~~ 302 (478)
..++. .....++.++.+-. ++.++++|..+.|+.+...
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~ 248 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK 248 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC
Confidence 23311 10223333444322 3466668887777777653
No 227
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=38.81 E-value=3.8e+02 Score=28.44 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=47.0
Q ss_pred CceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecCCcEEEEEEeccCceEEE
Q 011732 187 GMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQ 266 (478)
Q Consensus 187 G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~ 266 (478)
..|++|..-.+++|-++.+..|+.|+...+ + ++... ...+..|.+|...++.|++|+.- + +++|+...+++..
T Consensus 63 ~~i~~i~~d~~g~lWigT~~Gl~~yd~~~~--~-f~~~~-~~~~~~i~~i~~~~g~lWigt~~-G--l~~~~~~~~~~~~ 135 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNGILVYNYRAD--R-YEQPE-TDFPTDVRTMALQGDTLWLGALN-G--LYTYQLQSRKLTS 135 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTEEEEEETTTT--E-ECCCS-CCCCSCEEEEEEETTEEEEEETT-E--EEEEETTTCCEEE
T ss_pred ceEEEEEEcCCCcEEEEeCCCeEEEeCCCC--E-EECcc-cCCCceEEEEEecCCcEEEEcCC-c--ceeEeCCCCeEEE
Confidence 347777766655599999888988887642 1 22211 11122456666678899999854 4 5667776667765
Q ss_pred E
Q 011732 267 I 267 (478)
Q Consensus 267 v 267 (478)
+
T Consensus 136 ~ 136 (758)
T 3ott_A 136 F 136 (758)
T ss_dssp E
T ss_pred e
Confidence 5
No 228
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=38.70 E-value=2.2e+02 Score=25.67 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=26.2
Q ss_pred CcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEE
Q 011732 17 TPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVL 57 (478)
Q Consensus 17 tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i 57 (478)
.|+.++++++.++|++.............|..+|+.+++..
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 59 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT 59 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE
Confidence 68999999988888772000000112357999998887753
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=34.85 E-value=2.9e+02 Score=25.82 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=61.0
Q ss_pred cCCceEEEeeeC-CceEEEEeCCeEEEEeeCCCCcccceeeeecc---cceeEEEEEEe-CCEEEEeecC-----CcEEE
Q 011732 185 WPGMVLAICPYL-DRYFLASAGNAFYVCGFPNDNPQRVRRFAVGR---TRFMIMLLTAH-FTRIAVGDCR-----DGILF 254 (478)
Q Consensus 185 ~~G~V~ai~~~~-g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~---~~~~i~sL~~~-~n~IlvgD~~-----~Sv~l 254 (478)
.++.|.++.... |+ ++++....|++|++.. ..++.+.... ....+..+.+. ++.+++|+.. ..-.+
T Consensus 88 ~~~~v~~i~~~~dg~-l~v~~~~gl~~~d~~~---g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 88 LPFMGSALAKISDSK-QLIASDDGLFLRDTAT---GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTEEEEEETTT---CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred CCCcceEEEEeCCCe-EEEEECCCEEEEECCC---CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence 457788887554 56 7777788888888754 2233332111 12345666554 3457788753 24567
Q ss_pred EEEeccCceEEEEecCCCCceeEEEEee-cCCeEEEeCC-CCcEEEEecC
Q 011732 255 YSYHEDARKLEQIYCDPSQRLVADCVLM-DVDTAVVSDR-KGSIAVLSCS 302 (478)
Q Consensus 255 l~y~~~~~~L~~varD~~~~~vta~~~l-d~~~~l~aD~-~gNl~vl~~~ 302 (478)
++|+ ++++..+..+.. ....+.+- |...+.++|. .+.|+++.++
T Consensus 164 ~~~~--~g~~~~~~~~~~--~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 164 YHVA--KGKVTKLFADIS--IPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEE--TTEEEEEEEEES--SEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred EEEe--CCcEEEeeCCCc--ccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 7777 455655433211 12233332 2334555554 5778888864
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=34.31 E-value=2.8e+02 Score=25.46 Aligned_cols=67 Identities=7% Similarity=0.079 Sum_probs=33.4
Q ss_pred CeEEEEeeCCCCcccceeee-eccc-ceeE--EEEEEeCCEEEEeecCCcEEEEEEeccCceEEEEecCCCCceeEEEEe
Q 011732 206 NAFYVCGFPNDNPQRVRRFA-VGRT-RFMI--MLLTAHFTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQRLVADCVL 281 (478)
Q Consensus 206 ~~l~v~~l~~~~~~~L~~~a-~~~~-~~~i--~sL~~~~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ 281 (478)
+.|++|++..+ . +.... +... ...+ ..+...++ |++++ ..+ +..|+++...+..+.-. ..++++.|
T Consensus 215 ~~i~~~~~~~~--~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~-~~g--v~~~~~~g~~~~~~~~~---~~~~~~~f 284 (305)
T 3dr2_A 215 VEITAFAWRDG--A-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSS-GTG--VCVFDSDGQLLGHIPTP---GTASNCTF 284 (305)
T ss_dssp CEEEEEEEETT--E-EEEEEEEECCSSSCCCSEEECTTSC-EEECC-SSE--EEEECTTSCEEEEEECS---SCCCEEEE
T ss_pred CEEEEEEecCC--C-ccCCeEEEECCCCCCCeEEECCCCC-EEEec-CCc--EEEECCCCCEEEEEECC---CceeEEEE
Confidence 57888888652 2 32111 1111 1111 22333355 78888 455 56678866655555432 24556555
Q ss_pred e
Q 011732 282 M 282 (478)
Q Consensus 282 l 282 (478)
-
T Consensus 285 ~ 285 (305)
T 3dr2_A 285 D 285 (305)
T ss_dssp C
T ss_pred e
Confidence 3
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=33.30 E-value=2.6e+02 Score=24.94 Aligned_cols=103 Identities=11% Similarity=-0.059 Sum_probs=51.9
Q ss_pred ceEEEEeCCeEEEEeeCCCCcccceeeeecccc-eeEEEEEEe--CCEEEEeecCCcEEEEEEeccCceEEEEecCCCCc
Q 011732 198 RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTR-FMIMLLTAH--FTRIAVGDCRDGILFYSYHEDARKLEQIYCDPSQR 274 (478)
Q Consensus 198 ~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~-~~i~sL~~~--~n~IlvgD~~~Sv~ll~y~~~~~~L~~varD~~~~ 274 (478)
.+|+++....|+.+++.....+.+........+ ..+..+.+. +++|+++|....- +.+|+........+.... ..
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~-I~~~~~~g~~~~~~~~~~-~~ 79 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS-IGRASLHGGEPTTIIRQD-LG 79 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTE-EEEEESSSCCCEEEECTT-CC
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCE-EEEEecCCCCcEEEEECC-CC
Confidence 357888777888888875221111111111111 134455554 6899999987643 455665544333333211 12
Q ss_pred eeEEEEee-cCCeEEEeCCC-CcEEEEecC
Q 011732 275 LVADCVLM-DVDTAVVSDRK-GSIAVLSCS 302 (478)
Q Consensus 275 ~vta~~~l-d~~~~l~aD~~-gNl~vl~~~ 302 (478)
....+.+- +.+.+.++|.. +.|.++..+
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~ 109 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence 23333332 23466677763 456665543
No 232
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=33.17 E-value=2e+02 Score=30.65 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=43.3
Q ss_pred EEEEecCCCeEEEEEEeeC------------CCcceeEEEEEeCCCCcEEEEEECCCCC-------ceEEEEEEEECCe-
Q 011732 20 KVLYHSESRLLIVMRTELN------------NDTCSSDICCVDPLSGSVLSSFKLELGE-------TGKSMELVRVGHE- 79 (478)
Q Consensus 20 ki~y~~~~~~~~v~~~~~~------------~~~~~s~l~l~d~~t~~~i~~~~l~~~E-------~~~s~~~~~l~~~- 79 (478)
-++|.|+.+.+.+.+.... ...+..+|.-+|+.|++.+.++...++. ....+.-+.++++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 3799998887777653221 1123457999999999999999986533 2222333445664
Q ss_pred -eEEEEeee
Q 011732 80 -QVLVVGTS 87 (478)
Q Consensus 80 -~~l~VGT~ 87 (478)
.++++++.
T Consensus 314 ~~~v~~~~~ 322 (668)
T 1kv9_A 314 RKVLMQAPK 322 (668)
T ss_dssp EEEEEECCT
T ss_pred EEEEEEECC
Confidence 46776643
No 233
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=32.90 E-value=3.3e+02 Score=26.39 Aligned_cols=64 Identities=6% Similarity=-0.102 Sum_probs=38.9
Q ss_pred ceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEeccCceEEEE
Q 011732 198 RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHEDARKLEQI 267 (478)
Q Consensus 198 ~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~~~~~L~~v 267 (478)
.+|+++.++.|+.+++... ....+.. ....+..|.. .++.|++.|....- +++++.+......+
T Consensus 88 ~~l~~~~~~~I~~i~~~~~---~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~-I~r~~~~g~~~~~~ 153 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRS---EYTLLLN--NLENAIALDFHHRRELVFWSDVTLDR-ILRANLNGSNVEEV 153 (386)
T ss_dssp CEEEEECBSCEEEECTTSC---CCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCCEEEE
T ss_pred ceeEeecCccceeeccCCC---cEEEEec--CCCccEEEEEecCCCeEEEEeCCCCc-EEEEecCCCCcEEE
Confidence 3488888888888877652 1222221 1112444544 47899999988763 66777666554444
No 234
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=32.60 E-value=1.7e+02 Score=31.21 Aligned_cols=70 Identities=10% Similarity=0.095 Sum_probs=46.5
Q ss_pred eeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCCCC-CCCCCCcCcceEEEEEEEEe
Q 011732 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGPAI-MPSGEAESTKGRLIVLCIEH 114 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~~~-~~~~e~~~~~Gri~v~~i~~ 114 (478)
...|+.+|..|++++.++.+..+-...-+.. ..+++.|+++.++...-..+ ..+. .....|++++|.+..
T Consensus 497 dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y-~~~G~~~v~~~~G~~~~~~~~~~~~-~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 497 DGRLVAYHAATGEKLWEAPTGTGVVAAPSTY-MVDGRQYVSVAVGWGGVYGLAARAT-ERQGPGTVYTFVVGG 567 (677)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEEE-EETTEEEEEEEECCCHHHHHHCCSC-SCCCCCEEEEEEETC
T ss_pred CCcEEEEECCCCceeeeeeCCCCcccCCEEE-EeCCEEEEEEeccCCcccccccccc-ccCCCCeEEEEeccc
Confidence 4689999999999999999987665554433 57889999986552100000 0001 112379999999983
No 235
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=30.55 E-value=3.4e+02 Score=25.32 Aligned_cols=35 Identities=6% Similarity=-0.097 Sum_probs=24.6
Q ss_pred EEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEE
Q 011732 21 VLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSS 59 (478)
Q Consensus 21 i~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~ 59 (478)
.+++|+.+.++...... ....|.++|..+++....
T Consensus 41 ~~~SpDg~~l~~~~~~~----g~~~l~~~d~~~g~~~~l 75 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFD----GPWNYYLLDLNTQVATQL 75 (388)
T ss_dssp CCBCTTSCEEEEEECTT----SSCEEEEEETTTCEEEEC
T ss_pred ccCCCCCCEEEEEEcCC----CCceEEEEeCCCCceEEe
Confidence 56789998877775421 245799999998876543
No 236
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=29.77 E-value=3.3e+02 Score=24.91 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=60.5
Q ss_pred cCCceEEEeeeC-CceEEEEe-CC-----eEEEEeeCCCCcccceee-eecccceeEEEEEEe-CCEEEEeecCC-----
Q 011732 185 WPGMVLAICPYL-DRYFLASA-GN-----AFYVCGFPNDNPQRVRRF-AVGRTRFMIMLLTAH-FTRIAVGDCRD----- 250 (478)
Q Consensus 185 ~~G~V~ai~~~~-g~~Ll~av-g~-----~l~v~~l~~~~~~~L~~~-a~~~~~~~i~sL~~~-~n~IlvgD~~~----- 250 (478)
..+.|.+|+.-. |+ |+++. +. .|++|+... ..++.. ........+..|... ++.+++++...
T Consensus 85 ~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 85 HKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENG---DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp SSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTS---CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred CCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCC---CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 456788887654 55 66654 43 688877654 223311 111112345566554 45778888642
Q ss_pred cEEEEEEeccCceEEEEecCCCCceeEEEEeecC-CeEEEeC-CCCcEEEEecC
Q 011732 251 GILFYSYHEDARKLEQIYCDPSQRLVADCVLMDV-DTAVVSD-RKGSIAVLSCS 302 (478)
Q Consensus 251 Sv~ll~y~~~~~~L~~varD~~~~~vta~~~ld~-~~~l~aD-~~gNl~vl~~~ 302 (478)
...+++|+.+..++..+.... .....+.+-.+ ..+.++| ..+.|+++...
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQNI--SVANGIALSTDEKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp CEEEEEECTTSCCEEEEEEEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CceEEEEeCCCCEEEEeecCC--CcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence 456788887665665553321 12333333223 2344454 46778888764
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=27.26 E-value=3e+02 Score=29.32 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=49.3
Q ss_pred EEEEecCCCeEEEEEEeeC------------CCcceeEEEEEeCCCCcEEEEEECCCCC-------ceEEEEEEEECCe-
Q 011732 20 KVLYHSESRLLIVMRTELN------------NDTCSSDICCVDPLSGSVLSSFKLELGE-------TGKSMELVRVGHE- 79 (478)
Q Consensus 20 ki~y~~~~~~~~v~~~~~~------------~~~~~s~l~l~d~~t~~~i~~~~l~~~E-------~~~s~~~~~l~~~- 79 (478)
-++|+|+.+.+.+.+.... ...+..+|..+|+.|++.+.++...++. ....+.-+.++++
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5789999888777653221 1123457999999999999999876432 1122233344554
Q ss_pred -eEEEEeeecCCCCCCCCCCCCcCcceEEEEEEEE
Q 011732 80 -QVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 80 -~~l~VGT~~~~g~~~~~~~e~~~~~Gri~v~~i~ 113 (478)
+++++|+. .|.+++|+..
T Consensus 319 ~~~v~~~~~----------------~G~l~~lD~~ 337 (689)
T 1yiq_A 319 RKVLMQAPK----------------NGFFYVIDRA 337 (689)
T ss_dssp EEEEEECCT----------------TSEEEEEETT
T ss_pred EEEEEEECC----------------CCeEEEEECC
Confidence 46666643 5777777754
No 238
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=27.08 E-value=4.3e+02 Score=25.47 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=37.9
Q ss_pred eEEEeCC--------CCcCEEEEecCCCeEEEEEEeeCCCcceeEEEEEeCCCCcEEEE-EECC
Q 011732 9 VRKFHLG--------GTPKKVLYHSESRLLIVMRTELNNDTCSSDICCVDPLSGSVLSS-FKLE 63 (478)
Q Consensus 9 ir~i~L~--------~tp~ki~y~~~~~~~~v~~~~~~~~~~~s~l~l~d~~t~~~i~~-~~l~ 63 (478)
+.+|+++ ..|+.++++|+.+.+.|+.... ...|.++| .+++++.. +..+
T Consensus 110 ~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~-----~~~v~viD-~t~~~~~~~i~~~ 167 (373)
T 2mad_H 110 IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-----GPAVGLVV-QGGSSDDQLLSSP 167 (373)
T ss_pred EEEEECCCccccccCCCccceEECCCCCEEEEEecCC-----CCeEEEEE-CCCCEEeEEcCCC
Confidence 4677776 4799999999999888874321 35799999 99999877 6654
No 239
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=26.96 E-value=3.5e+02 Score=25.37 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=30.0
Q ss_pred EEEEEeccCceEEEEecCCCCcee-EEEEeecCCeEEEeC------CCCcEEEEec
Q 011732 253 LFYSYHEDARKLEQIYCDPSQRLV-ADCVLMDVDTAVVSD------RKGSIAVLSC 301 (478)
Q Consensus 253 ~ll~y~~~~~~L~~varD~~~~~v-ta~~~ld~~~~l~aD------~~gNl~vl~~ 301 (478)
.+..|++..++-..++.-+.++.. .++..+++.-++.+= ....++.|.+
T Consensus 169 ~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 169 FLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEEC
T ss_pred cEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEe
Confidence 567788888888888776666555 555555554333321 1345666655
No 240
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=23.61 E-value=4.8e+02 Score=24.82 Aligned_cols=104 Identities=10% Similarity=0.078 Sum_probs=57.5
Q ss_pred CceEEEEe-CCeEEEEeeCCCCcccceeeeeccc-ceeEEEEEEe----------CCEEEEeecCCcEEEEEEeccCceE
Q 011732 197 DRYFLASA-GNAFYVCGFPNDNPQRVRRFAVGRT-RFMIMLLTAH----------FTRIAVGDCRDGILFYSYHEDARKL 264 (478)
Q Consensus 197 g~~Ll~av-g~~l~v~~l~~~~~~~L~~~a~~~~-~~~i~sL~~~----------~n~IlvgD~~~Sv~ll~y~~~~~~L 264 (478)
+.+|+.|. .++|.+|+....+.........+.. .-.|.++... +.+|+-|-.-+.|-+..........
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 34244343 5679999987621111111122222 2256666653 4566666666677776554332222
Q ss_pred EEEecCCCCceeEEEEeecC--CeEEEeCCCCcEEEEecCC
Q 011732 265 EQIYCDPSQRLVADCVLMDV--DTAVVSDRKGSIAVLSCSD 303 (478)
Q Consensus 265 ~~varD~~~~~vta~~~ld~--~~~l~aD~~gNl~vl~~~~ 303 (478)
... .....++++.|--. ..++.+..+|.+.+++...
T Consensus 181 ~~~---~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 181 AGY---PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp EEE---ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred eec---CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence 222 23446778887533 2688889999999998654
No 241
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=23.40 E-value=4.8e+02 Score=24.76 Aligned_cols=64 Identities=6% Similarity=-0.095 Sum_probs=37.6
Q ss_pred ceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEeccCceEEEE
Q 011732 198 RYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHEDARKLEQI 267 (478)
Q Consensus 198 ~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~~~~~L~~v 267 (478)
.+|+++..+.|+.+++... . ...+.. ....+..|.. .++.|++.|....- +.+++........+
T Consensus 45 ~~ll~~~~~~I~~i~~~g~--~-~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~-I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 45 PVLLFANRIDIRQVLPHRS--E-YTLLLN--NLENAIALDFHHRRELVFWSDVTLDR-ILRANLNGSNVEEV 110 (349)
T ss_dssp CEEEEECBSCEEEECTTSC--C-EEEEEC--SCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEE
T ss_pred ceeEeecccceEEEeCCCC--e-eEEeec--CCCceEEEEEeccccEEEEEeccCCc-eEEEecCCCCceEE
Confidence 3488888888877777642 1 222211 1112444544 57999999987763 56676655443333
No 242
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=22.91 E-value=1.9e+02 Score=30.48 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=35.5
Q ss_pred eeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeec
Q 011732 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSL 88 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~ 88 (478)
...|+.+|.+|++.+.+++++.+-...-+. ...++++||++..+.
T Consensus 493 dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~-y~~~G~qyv~~~~G~ 537 (599)
T 1w6s_A 493 DGYLKARDSDTGDLLWKFKIPSGAIGYPMT-YTHKGTQYVAIYYGV 537 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTEEEEEEEECC
T ss_pred CCeEEEEECCCCCEEEEeeCCCCcEeccEE-EEeCCEEEEEEEccC
Confidence 357999999999999999998765554333 356889999998875
No 243
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=22.89 E-value=6.3e+02 Score=26.80 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=19.2
Q ss_pred EEEEEeccCce------EEEEecC-CCCceeEEEEeec
Q 011732 253 LFYSYHEDARK------LEQIYCD-PSQRLVADCVLMD 283 (478)
Q Consensus 253 ~ll~y~~~~~~------L~~varD-~~~~~vta~~~ld 283 (478)
.++.|+...++ ...++.- +.+|.-.++..++
T Consensus 569 ~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~ 606 (695)
T 2zwa_A 569 KAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT 606 (695)
T ss_dssp EEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE
T ss_pred cEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC
Confidence 35566766666 6666653 4666666666666
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=22.88 E-value=4.5e+02 Score=24.17 Aligned_cols=100 Identities=9% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCc-eEEEEeCCeEEEEeeCCCCcccceeee------------------ecccceeEEEEEEe--CCEEEEeecCCcEEE
Q 011732 196 LDR-YFLASAGNAFYVCGFPNDNPQRVRRFA------------------VGRTRFMIMLLTAH--FTRIAVGDCRDGILF 254 (478)
Q Consensus 196 ~g~-~Ll~avg~~l~v~~l~~~~~~~L~~~a------------------~~~~~~~i~sL~~~--~n~IlvgD~~~Sv~l 254 (478)
+|. +.+...+.+|+.|+... ..++... .......+..|... ++.|+|+|...+ +
T Consensus 29 ~g~~l~v~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~--i 103 (322)
T 2fp8_A 29 TNKGFYTSVQDGRVIKYEGPN---SGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYH--L 103 (322)
T ss_dssp TCSSEEEECTTSEEEEECCTT---TCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTE--E
T ss_pred CCCEEEEEcCCCeEEEECCCC---CceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCC--E
Q ss_pred EEEeccCceEEEEecCCCC---ceeEEEEeec-CCeEEEeCCC------------------CcEEEEe
Q 011732 255 YSYHEDARKLEQIYCDPSQ---RLVADCVLMD-VDTAVVSDRK------------------GSIAVLS 300 (478)
Q Consensus 255 l~y~~~~~~L~~varD~~~---~~vta~~~ld-~~~~l~aD~~------------------gNl~vl~ 300 (478)
++|+...+.+..++..... .....+.+-. ++.+.++|.. |.++.+.
T Consensus 104 ~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 104 SVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
No 245
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=22.84 E-value=31 Score=25.52 Aligned_cols=44 Identities=18% Similarity=0.015 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCcceecc-CCCCCCCCCCCHHHHHHHHHHHhhhc
Q 011732 434 QQEAVLSFTLGSFDTIKA-SSKLPPSSPIPVNQVVQLLERVHYAL 477 (478)
Q Consensus 434 ~q~~Ia~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~ 477 (478)
.+.+||+.+|-+.-|++. -.+.+.-.+.+.+.|.+.++++.|..
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY~p 55 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLP 55 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 478999999988877765 22222334556667888888888854
No 246
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=22.83 E-value=1.8e+02 Score=31.17 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=35.7
Q ss_pred eeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeec
Q 011732 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSL 88 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~ 88 (478)
-..|+.+|.+|++.+.+++++.+-...-+.. ..++++|++|.++.
T Consensus 495 dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty-~~~G~qyv~~~~G~ 539 (689)
T 1yiq_A 495 DGRVIAYAADTGEKLWEQPAASGVMAAPVTY-SVDGEQYVTFMAGW 539 (689)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEEE-EETTEEEEEEEECC
T ss_pred CCcEEEEECCCCccceeeeCCCCcccCceEE-EECCEEEEEEEecC
Confidence 3689999999999999999986655444433 57889999988774
No 247
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=22.41 E-value=1.8e+02 Score=30.47 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=45.2
Q ss_pred eeEEEEEeCCCCcEEEEEECCCCCceEEEEEEEECCeeEEEEeeecCCCC-----CCCCCCCCcCcceEEEEEEEE
Q 011732 43 SSDICCVDPLSGSVLSSFKLELGETGKSMELVRVGHEQVLVVGTSLSSGP-----AIMPSGEAESTKGRLIVLCIE 113 (478)
Q Consensus 43 ~s~l~l~d~~t~~~i~~~~l~~~E~~~s~~~~~l~~~~~l~VGT~~~~g~-----~~~~~~e~~~~~Gri~v~~i~ 113 (478)
-..|+.+|.+|++.+.+++++.+-...-+ +...+++.||++-.+..-+. ...+.....+..|+|++|.+.
T Consensus 506 dg~l~A~D~~tG~~lW~~~~~~g~~a~P~-~y~~~G~qYv~~~~G~gg~~~~~~~~~~~~~~~~~~g~~~~~f~l~ 580 (582)
T 1flg_A 506 DGYFKAFDAKSGKELWKFQTGSGIVSPPI-TWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLP 580 (582)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCE-EEEETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCCCCEEEEEECC
T ss_pred CCcEEEEECCCCCEEEEecCCCCcccCce-EEEECCEEEEEEEccCCCcccccccccccccccCCCCCEEEEEeCC
Confidence 46899999999999999999765433222 23467899999987742100 000000123457899999886
No 248
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=21.69 E-value=5.6e+02 Score=24.90 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=33.3
Q ss_pred eEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEecc
Q 011732 199 YFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHED 260 (478)
Q Consensus 199 ~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~~ 260 (478)
||+++.++.|+..++...+ ...+.. ....+..|.. .++.|++.|..... +++++..
T Consensus 85 ~ll~~~~~~I~~i~l~~~~---~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~-I~~~~~~ 142 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSE---YTSLIP--NLRNVVALDTEVASNRIYWSDLSQRM-ICSTQLD 142 (400)
T ss_dssp EEEEEETTEEEEECTTSCS---CEEEEC--SCSCEEEEEEETTTTEEEEEETTTTE-EEEEEC-
T ss_pred eeEEeccceeEEEccCCcc---eeEecc--ccCcceEEeeeeccCceEEEecCCCe-EEEEEcc
Confidence 4888888888888887521 222211 1113444444 47899999987653 4455443
No 249
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=20.80 E-value=8.3e+02 Score=26.96 Aligned_cols=120 Identities=9% Similarity=0.041 Sum_probs=59.7
Q ss_pred eEEEEEEEecCCceEEEeeeCCceEEEEeCCeEEEEeeCCCCcccceeeeecccceeEEEEEEeCCEEEEeecC----Cc
Q 011732 176 QLRLAYSTTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTAHFTRIAVGDCR----DG 251 (478)
Q Consensus 176 ~l~l~~~~~~~G~V~ai~~~~g~~Ll~avg~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~~~n~IlvgD~~----~S 251 (478)
||.-.+..-..+.+.+..-- +.+|+.+....|++|++.. ...+.+...........++..|.+|+.+... ..
T Consensus 4 kl~~~~g~~~~~~~~~~~~S-~~~iaf~~~~~l~~~~~~g---g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~ 79 (1045)
T 1k32_A 4 KLHEMHGLCMPNLLLNPDIH-GDRIIFVCCDDLWEHDLKS---GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNT 79 (1045)
T ss_dssp ---------CCCCCEEEEEE-TTEEEEEETTEEEEEETTT---CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCE
T ss_pred cccccccccccceEeCcEEe-CCEEEEEECCcEEEEECCC---CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCC
Confidence 44444444445556655534 4448888888899998865 2233333222222333334457888765332 44
Q ss_pred EEEEEEeccCceEEEEecCCCCcee-------EEEEeecCC-eEEEeCCC------CcEEEEec
Q 011732 252 ILFYSYHEDARKLEQIYCDPSQRLV-------ADCVLMDVD-TAVVSDRK------GSIAVLSC 301 (478)
Q Consensus 252 v~ll~y~~~~~~L~~varD~~~~~v-------ta~~~ld~~-~~l~aD~~------gNl~vl~~ 301 (478)
..++.|+...+....+... +..+ .++.+-.++ .++.++.+ ..|+.+..
T Consensus 80 ~~i~~~d~~~g~~~~lt~~--~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~ 141 (1045)
T 1k32_A 80 ADLYFYNGENGEIKRITYF--SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVEN 141 (1045)
T ss_dssp EEEEEEETTTTEEEECCCC--CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEG
T ss_pred CeEEEEECCCCCeEEcccC--CCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEEC
Confidence 5666677766666655433 2333 566664333 33444433 34666554
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=20.34 E-value=4.5e+02 Score=23.27 Aligned_cols=105 Identities=10% Similarity=-0.061 Sum_probs=52.6
Q ss_pred eEEEeeeC-CceEEEEe----CCeEEEEeeCCCCcccceeeeecccceeEEEEEE--eCCEEEEeecCCcEEEEEEeccC
Q 011732 189 VLAICPYL-DRYFLASA----GNAFYVCGFPNDNPQRVRRFAVGRTRFMIMLLTA--HFTRIAVGDCRDGILFYSYHEDA 261 (478)
Q Consensus 189 V~ai~~~~-g~~Ll~av----g~~l~v~~l~~~~~~~L~~~a~~~~~~~i~sL~~--~~n~IlvgD~~~Sv~ll~y~~~~ 261 (478)
+..|+--. +++|.++- +.+|+++.++... .+.+..... .....|.+ .+++++++|.... .+..|+.+.
T Consensus 124 P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~~~~-~~P~gia~d~~~~~lyv~d~~~~-~I~~~~~~g 198 (267)
T 1npe_A 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDNL-GLPNGLTFDAFSSQLCWVDAGTH-RAECLNPAQ 198 (267)
T ss_dssp EEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTTC-SCEEEEEEETTTTEEEEEETTTT-EEEEEETTE
T ss_pred ccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEEEECCC-CCCcEEEEcCCCCEEEEEECCCC-EEEEEecCC
Confidence 34554432 33366664 2467777775421 222111111 13445554 4689999998754 234455544
Q ss_pred ceEEEEecCCCCceeEEEEeecCCeEEEeCCC-CcEEEEec
Q 011732 262 RKLEQIYCDPSQRLVADCVLMDVDTAVVSDRK-GSIAVLSC 301 (478)
Q Consensus 262 ~~L~~varD~~~~~vta~~~ld~~~~l~aD~~-gNl~vl~~ 301 (478)
.....+... ..+...+. +|++.+.++|.. +.|+.+..
T Consensus 199 ~~~~~~~~~--~~~P~gi~-~d~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 199 PGRRKVLEG--LQYPFAVT-SYGKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp EEEEEEEEC--CCSEEEEE-EETTEEEEEETTTTEEEEEET
T ss_pred CceEEEecC--CCCceEEE-EeCCEEEEEECCCCeEEEEeC
Confidence 444433322 11223333 466777888865 55555543
Done!