Query 011733
Match_columns 478
No_of_seqs 310 out of 1955
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:38:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 1.4E-67 3E-72 555.9 10.7 211 260-470 31-370 (524)
2 PLN02998 beta-glucosidase 100.0 1.3E-57 2.9E-62 484.0 13.1 191 261-451 26-341 (497)
3 PLN02814 beta-glucosidase 100.0 1.1E-57 2.4E-62 485.4 11.9 190 261-451 23-335 (504)
4 PLN02849 beta-glucosidase 100.0 3.5E-57 7.6E-62 481.4 11.4 190 260-450 24-336 (503)
5 PRK09593 arb 6-phospho-beta-gl 100.0 1.7E-56 3.6E-61 473.7 12.0 189 263-451 3-322 (478)
6 PF00232 Glyco_hydro_1: Glycos 100.0 3.1E-56 6.7E-61 467.6 6.1 189 263-452 2-306 (455)
7 PRK13511 6-phospho-beta-galact 100.0 3.2E-55 6.9E-60 462.7 12.5 185 263-450 2-306 (469)
8 TIGR01233 lacG 6-phospho-beta- 100.0 7.6E-55 1.7E-59 459.8 12.1 185 264-450 2-305 (467)
9 PRK15014 6-phospho-beta-glucos 100.0 2.1E-54 4.4E-59 457.7 13.9 189 262-450 2-322 (477)
10 PRK09852 cryptic 6-phospho-bet 100.0 2.9E-53 6.2E-58 448.7 13.2 187 264-450 2-318 (474)
11 PRK09589 celA 6-phospho-beta-g 100.0 2.8E-53 6.1E-58 448.9 8.6 164 265-432 3-180 (476)
12 COG2723 BglB Beta-glucosidase/ 100.0 2E-51 4.4E-56 429.9 9.8 172 264-439 2-179 (460)
13 TIGR03356 BGL beta-galactosida 100.0 7.4E-51 1.6E-55 425.0 11.4 184 266-451 1-296 (427)
14 PF00232 Glyco_hydro_1: Glycos 99.8 1.6E-19 3.4E-24 190.5 4.7 78 167-249 378-455 (455)
15 KOG0626 Beta-glucosidase, lact 99.8 7.3E-19 1.6E-23 187.1 8.0 132 89-250 380-512 (524)
16 PLN02849 beta-glucosidase 99.8 5.1E-19 1.1E-23 189.5 6.8 79 166-248 406-484 (503)
17 TIGR01233 lacG 6-phospho-beta- 99.8 5.5E-19 1.2E-23 187.7 5.9 78 167-250 390-467 (467)
18 PLN02814 beta-glucosidase 99.8 8.3E-19 1.8E-23 187.9 6.9 82 166-251 406-487 (504)
19 PLN02998 beta-glucosidase 99.8 7.7E-19 1.7E-23 187.9 6.4 78 166-247 411-488 (497)
20 PRK09852 cryptic 6-phospho-bet 99.7 1.9E-18 4.1E-23 183.9 6.0 80 167-250 389-472 (474)
21 PRK13511 6-phospho-beta-galact 99.7 1.8E-18 3.8E-23 183.8 5.7 77 167-249 392-468 (469)
22 PRK09589 celA 6-phospho-beta-g 99.7 3E-18 6.5E-23 182.5 5.9 78 167-248 391-473 (476)
23 PRK15014 6-phospho-beta-glucos 99.7 3.9E-18 8.4E-23 181.7 5.3 79 167-249 392-475 (477)
24 PRK09593 arb 6-phospho-beta-gl 99.7 4.9E-18 1.1E-22 180.9 5.6 80 167-250 392-476 (478)
25 COG2723 BglB Beta-glucosidase/ 99.6 5.8E-17 1.3E-21 171.1 3.4 77 167-248 378-454 (460)
26 TIGR03356 BGL beta-galactosida 99.6 3E-16 6.5E-21 165.0 3.0 69 166-240 359-427 (427)
27 PF02449 Glyco_hydro_42: Beta- 98.5 1E-07 2.2E-12 98.4 4.0 74 316-393 10-84 (374)
28 PF00150 Cellulase: Cellulase 97.6 0.0001 2.2E-09 71.0 6.6 66 317-384 22-88 (281)
29 PF07021 MetW: Methionine bios 97.6 7.5E-05 1.6E-09 72.1 4.6 101 92-199 14-116 (193)
30 COG1874 LacA Beta-galactosidas 97.6 4.4E-05 9.5E-10 85.3 3.4 74 316-393 30-106 (673)
31 smart00633 Glyco_10 Glycosyl h 94.6 0.022 4.7E-07 56.3 2.5 85 337-433 1-87 (254)
32 PLN02161 beta-amylase 93.3 0.16 3.5E-06 55.7 6.2 73 312-387 113-197 (531)
33 PLN02803 beta-amylase 92.8 0.25 5.5E-06 54.5 6.9 69 316-387 107-187 (548)
34 PLN02801 beta-amylase 92.6 0.3 6.5E-06 53.6 7.1 69 316-387 37-117 (517)
35 PLN00197 beta-amylase; Provisi 92.3 0.33 7.2E-06 53.7 7.1 68 317-387 128-207 (573)
36 PLN02705 beta-amylase 92.2 0.32 6.8E-06 54.5 6.8 71 314-387 266-348 (681)
37 PLN02905 beta-amylase 91.3 0.41 8.8E-06 53.8 6.4 73 312-387 282-366 (702)
38 PF01373 Glyco_hydro_14: Glyco 91.0 0.18 3.9E-06 54.0 3.2 70 315-387 15-96 (402)
39 PF08241 Methyltransf_11: Meth 90.9 0.4 8.8E-06 38.0 4.5 89 96-189 1-91 (95)
40 PF01301 Glyco_hydro_35: Glyco 88.3 0.41 9E-06 49.4 3.3 72 317-389 25-104 (319)
41 COG2730 BglC Endoglucanase [Ca 88.1 1.4 3.1E-05 46.8 7.3 74 311-384 63-144 (407)
42 TIGR03587 Pse_Me-ase pseudamin 86.7 1.1 2.4E-05 43.1 5.0 99 93-196 45-144 (204)
43 TIGR02081 metW methionine bios 83.4 2.9 6.3E-05 39.2 6.1 100 93-199 15-116 (194)
44 PTZ00098 phosphoethanolamine N 82.1 3.3 7.1E-05 41.3 6.3 119 70-192 31-153 (263)
45 PF13489 Methyltransf_23: Meth 78.0 2.4 5.2E-05 37.2 3.4 89 90-192 21-113 (161)
46 TIGR00740 methyltransferase, p 71.4 24 0.00051 34.2 8.7 114 74-192 36-158 (239)
47 PF08242 Methyltransf_12: Meth 69.8 5.4 0.00012 32.8 3.4 92 96-189 1-97 (99)
48 TIGR02469 CbiT precorrin-6Y C5 68.7 15 0.00033 30.7 6.0 100 92-195 20-123 (124)
49 PRK11207 tellurite resistance 66.2 21 0.00046 33.8 7.0 108 72-190 17-129 (197)
50 PF00331 Glyco_hydro_10: Glyco 63.7 4.6 9.9E-05 41.6 2.2 90 336-433 43-138 (320)
51 PRK15451 tRNA cmo(5)U34 methyl 62.4 24 0.00053 34.6 6.9 118 70-192 35-161 (247)
52 PRK10258 biotin biosynthesis p 62.0 18 0.0004 35.1 5.9 122 64-191 13-136 (251)
53 TIGR02021 BchM-ChlM magnesium 61.8 17 0.00037 34.6 5.5 92 93-192 57-155 (219)
54 PLN03059 beta-galactosidase; P 61.3 11 0.00024 44.2 4.8 72 316-388 59-138 (840)
55 PRK07580 Mg-protoporphyrin IX 60.3 28 0.00061 32.9 6.7 102 79-189 51-160 (230)
56 PF14488 DUF4434: Domain of un 59.8 17 0.00037 34.3 5.1 62 316-379 20-88 (166)
57 PF01229 Glyco_hydro_39: Glyco 59.7 9.9 0.00022 41.3 4.0 59 317-378 40-106 (486)
58 PRK05785 hypothetical protein; 58.9 36 0.00079 33.2 7.4 90 92-189 52-141 (226)
59 PF02836 Glyco_hydro_2_C: Glyc 57.3 5.9 0.00013 39.8 1.6 24 314-337 34-57 (298)
60 PF13204 DUF4038: Protein of u 57.0 22 0.00048 36.2 5.7 60 319-378 33-110 (289)
61 cd02440 AdoMet_MTases S-adenos 53.7 26 0.00056 26.9 4.4 94 94-192 1-102 (107)
62 PF07745 Glyco_hydro_53: Glyco 52.2 34 0.00073 36.1 6.3 70 319-395 27-99 (332)
63 PLN02233 ubiquinone biosynthes 51.8 39 0.00085 33.6 6.4 126 64-192 22-179 (261)
64 PRK11036 putative S-adenosyl-L 50.2 37 0.00079 33.3 5.9 98 89-192 42-146 (255)
65 PLN02244 tocopherol O-methyltr 48.2 39 0.00085 35.0 6.0 97 91-192 118-220 (340)
66 PF12847 Methyltransf_18: Meth 47.4 25 0.00054 29.1 3.6 98 93-191 3-107 (112)
67 TIGR02072 BioC biotin biosynth 47.3 57 0.0012 30.5 6.5 95 93-192 36-133 (240)
68 PLN02336 phosphoethanolamine N 46.4 38 0.00082 36.3 5.7 97 93-192 39-139 (475)
69 TIGR02752 MenG_heptapren 2-hep 45.7 31 0.00067 32.8 4.5 97 93-192 47-148 (231)
70 PF14871 GHL6: Hypothetical gl 44.8 44 0.00095 30.5 5.1 66 320-386 4-81 (132)
71 PRK08317 hypothetical protein; 44.2 39 0.00084 31.4 4.8 97 93-192 21-121 (241)
72 TIGR00433 bioB biotin syntheta 42.1 57 0.0012 32.5 5.9 53 319-374 123-176 (296)
73 PRK12335 tellurite resistance 42.0 47 0.001 33.4 5.3 106 73-189 108-217 (287)
74 PRK10150 beta-D-glucuronidase; 41.9 16 0.00034 40.8 2.0 21 316-336 313-333 (604)
75 PF10717 ODV-E18: Occlusion-de 41.6 23 0.00049 30.6 2.5 32 29-60 23-54 (85)
76 TIGR00477 tehB tellurite resis 41.0 48 0.001 31.4 4.9 106 74-190 19-128 (195)
77 TIGR00452 methyltransferase, p 40.0 42 0.00091 34.9 4.7 96 93-192 123-222 (314)
78 KOG0496 Beta-galactosidase [Ca 39.6 65 0.0014 37.0 6.3 72 316-388 49-128 (649)
79 COG3250 LacZ Beta-galactosidas 38.4 18 0.00039 42.4 1.9 26 311-336 316-341 (808)
80 PF13649 Methyltransf_25: Meth 35.0 38 0.00083 28.0 2.9 90 95-187 1-99 (101)
81 COG2764 PhnB Uncharacterized p 34.4 1.3E+02 0.0029 27.8 6.5 116 77-227 12-131 (136)
82 smart00642 Aamy Alpha-amylase 32.4 98 0.0021 29.0 5.5 67 315-381 18-97 (166)
83 PRK10340 ebgA cryptic beta-D-g 32.4 24 0.00053 42.2 1.7 24 314-337 353-376 (1021)
84 PRK01683 trans-aconitate 2-met 32.2 1.2E+02 0.0026 29.5 6.2 96 90-191 30-126 (258)
85 PRK09525 lacZ beta-D-galactosi 31.2 26 0.00057 42.0 1.7 24 314-337 369-392 (1027)
86 TIGR00417 speE spermidine synt 29.4 1.3E+02 0.0027 30.2 6.0 53 69-129 53-105 (270)
87 PF03198 Glyco_hydro_72: Gluca 27.8 77 0.0017 33.4 4.2 49 317-379 54-102 (314)
88 PRK15068 tRNA mo(5)U34 methylt 27.8 93 0.002 32.2 4.9 96 93-192 124-223 (322)
89 smart00828 PKS_MT Methyltransf 26.3 87 0.0019 29.6 4.1 96 93-192 1-102 (224)
90 COG0312 TldD Predicted Zn-depe 26.3 22 0.00047 38.3 -0.1 121 81-222 260-395 (454)
91 TIGR03581 EF_0839 conserved hy 26.0 1.1E+02 0.0023 31.1 4.7 51 316-374 135-207 (236)
92 PF06040 Adeno_E3: Adenovirus 26.0 55 0.0012 30.0 2.4 45 8-52 58-108 (127)
93 COG2226 UbiE Methylase involve 25.9 98 0.0021 31.2 4.5 97 92-192 52-153 (238)
94 PRK10150 beta-D-glucuronidase; 25.4 1.2E+02 0.0025 34.0 5.4 66 171-252 531-600 (604)
95 PF02638 DUF187: Glycosyl hydr 25.4 1.3E+02 0.0029 31.1 5.5 77 316-394 19-119 (311)
96 TIGR01934 MenG_MenH_UbiE ubiqu 25.2 1.1E+02 0.0025 28.2 4.6 95 93-192 41-140 (223)
97 PRK00121 trmB tRNA (guanine-N( 25.2 72 0.0016 30.4 3.3 85 79-163 28-118 (202)
98 PF13847 Methyltransf_31: Meth 25.1 83 0.0018 28.0 3.5 97 90-192 2-107 (152)
99 PRK10148 hypothetical protein; 24.5 2.4E+02 0.0052 25.9 6.4 121 76-222 12-137 (147)
100 TIGR00539 hemN_rel putative ox 24.4 91 0.002 32.4 4.1 61 319-382 100-162 (360)
101 smart00138 MeTrc Methyltransfe 24.1 3.9E+02 0.0085 26.7 8.4 114 79-194 86-241 (264)
102 PF04639 Baculo_E56: Baculovir 24.1 61 0.0013 33.9 2.7 34 12-46 257-290 (305)
103 PLN02389 biotin synthase 24.1 1.8E+02 0.0038 31.2 6.2 55 318-375 177-232 (379)
104 PRK11088 rrmA 23S rRNA methylt 23.9 1.8E+02 0.0038 28.9 5.9 96 83-192 77-178 (272)
105 PRK07094 biotin synthase; Prov 23.8 1.2E+02 0.0026 30.8 4.8 53 318-373 128-182 (323)
106 PF11899 DUF3419: Protein of u 23.6 98 0.0021 33.2 4.2 39 154-192 293-331 (380)
107 PHA01812 hypothetical protein 23.4 74 0.0016 28.1 2.7 58 159-220 60-120 (122)
108 cd07948 DRE_TIM_HCS Saccharomy 23.3 1.2E+02 0.0025 30.7 4.5 60 319-378 74-134 (262)
109 PF00128 Alpha-amylase: Alpha 23.3 1.5E+02 0.0033 28.4 5.2 57 319-377 7-73 (316)
110 PLN02336 phosphoethanolamine N 22.7 1.4E+02 0.0031 31.9 5.3 95 93-192 268-366 (475)
111 PRK06202 hypothetical protein; 22.5 2.7E+02 0.0059 26.7 6.7 99 90-192 59-164 (232)
112 PRK04161 tagatose 1,6-diphosph 22.2 1.7E+02 0.0038 31.1 5.6 61 321-384 112-172 (329)
113 PF03848 TehB: Tellurite resis 21.7 83 0.0018 30.7 3.0 101 75-188 20-126 (192)
114 PLN02396 hexaprenyldihydroxybe 20.9 1.6E+02 0.0035 30.7 5.1 94 93-192 133-232 (322)
115 PF05089 NAGLU: Alpha-N-acetyl 20.6 36 0.00079 36.0 0.3 35 355-389 94-128 (333)
116 PLN02361 alpha-amylase 20.3 1.6E+02 0.0034 31.9 4.9 67 313-379 26-101 (401)
117 KOG4836 Uncharacterized conser 20.0 37 0.0008 33.9 0.2 69 19-91 67-140 (215)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-67 Score=555.88 Aligned_cols=211 Identities=58% Similarity=1.061 Sum_probs=193.7
Q ss_pred cccCCCCCCCceehhhhhhhhhcCccCCCCCCCceeeecccCCc--c--cCCCCccccccccChHHHHHHHHcCCCeeee
Q 011733 260 EYTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGN--V--LGNGDIACDEYHKYKEDVKLMAKTGLDAYRF 335 (478)
Q Consensus 260 s~~~~~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~~~~~--~--~~~gdvA~D~Y~rykeDi~Lmk~lGvnayRF 335 (478)
++.+..||++|+||+||||||+|||++++||++|+||.|+|..+ + .+++|+|||+||||+|||+|||+||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 67899999999999999999999999999999999999998632 2 2468999999999999999999999999999
Q ss_pred ccccceeecCCC--CCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee---------------
Q 011733 336 SISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV--------------- 398 (478)
Q Consensus 336 SIsWsRI~P~G~--G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv--------------- 398 (478)
|||||||+|.|+ +.||++|++||+++|++|+++||+|+|||+|||+||+|+|+||||+|++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999997 689999999999999999999999999999999999999999999999885
Q ss_pred --------------------------------------------------------------------------------
Q 011733 399 -------------------------------------------------------------------------------- 398 (478)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (478)
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence
Q ss_pred ----------------------------ecCCcccCCchHHhhhhhCCCCCccchhhhhhhcccccceeeccceeeeeec
Q 011733 399 ----------------------------VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKD 450 (478)
Q Consensus 399 ----------------------------~~~P~~fgdYp~~m~~~~GdRLP~FT~eE~~~lkGS~DF~gln~Y~t~y~~~ 450 (478)
+++|+.+||||+.|++.+|+|||.||++|+++||||+||+|||||||+|+++
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 1688899999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCcccCcceeE
Q 011733 451 NPSSLKQKHRDWSADTATKF 470 (478)
Q Consensus 451 ~~~~~~~~~~~~~~D~~~~~ 470 (478)
.+.+.+.....+..|..+.+
T Consensus 351 ~~~~~~~~~~~~~~d~~~~~ 370 (524)
T KOG0626|consen 351 LKPPPDPSQPGWSTDSGVDW 370 (524)
T ss_pred cCCCCCCCCcccccccceee
Confidence 77555444455777776665
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.3e-57 Score=484.04 Aligned_cols=191 Identities=76% Similarity=1.350 Sum_probs=175.1
Q ss_pred ccCCCCCCCceehhhhhhhhhcCccCCCCCCCceeeecccCCccc-CCCCccccccccChHHHHHHHHcCCCeeeecccc
Q 011733 261 YTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVL-GNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISW 339 (478)
Q Consensus 261 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~~~~~~~-~~gdvA~D~Y~rykeDi~Lmk~lGvnayRFSIsW 339 (478)
..+.+||++|+||+|||||||||+++++||++|+||.|.+.+... .++++||||||||+|||+|||+||+|+|||||+|
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsW 105 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSISW 105 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeeccH
Confidence 456789999999999999999999999999999999999854222 3789999999999999999999999999999999
Q ss_pred ceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceeee--------------------
Q 011733 340 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIVV-------------------- 399 (478)
Q Consensus 340 sRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv~-------------------- 399 (478)
|||+|+|.|.+|++|++||+++||+|+++||||+|||+|||+|+||+++||||+|+++++
T Consensus 106 sRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~W 185 (497)
T PLN02998 106 SRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHW 185 (497)
T ss_pred HhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEE
Confidence 999999988999999999999999999999999999999999999999999999988640
Q ss_pred --------------------------------------------------------------------------------
Q 011733 400 -------------------------------------------------------------------------------- 399 (478)
Q Consensus 400 -------------------------------------------------------------------------------- 399 (478)
T Consensus 186 iT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~ 265 (497)
T PLN02998 186 TTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGA 265 (497)
T ss_pred EEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCee
Confidence
Q ss_pred ------------------------cCCcccCCchHHhhhhhCCCCCccchhhhhhhcccccceeeccceeeeeecC
Q 011733 400 ------------------------ANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKDN 451 (478)
Q Consensus 400 ------------------------~~P~~fgdYp~~m~~~~GdRLP~FT~eE~~~lkGS~DF~gln~Y~t~y~~~~ 451 (478)
+||+..|+||+.|++.+++++|.||++|.++|+|++||+|||+|++.++++.
T Consensus 266 ~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~ 341 (497)
T PLN02998 266 VPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDN 341 (497)
T ss_pred ecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccC
Confidence 1344579999999999999999999999999999999999999999999753
No 3
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.1e-57 Score=485.39 Aligned_cols=190 Identities=67% Similarity=1.194 Sum_probs=174.5
Q ss_pred ccCCCCCCCceehhhhhhhhhcCccCCCCCCCceeeecccCCcccCCCCccccccccChHHHHHHHHcCCCeeeeccccc
Q 011733 261 YTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWS 340 (478)
Q Consensus 261 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~~~~~~~~~gdvA~D~Y~rykeDi~Lmk~lGvnayRFSIsWs 340 (478)
+.+.+||++|+||+|||||||||+++++||++|+||.+++... ..++++||||||||+|||+|||+||+|+|||||+||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~~~-~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWs 101 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHCYN-GGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWS 101 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeeccC-CCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHh
Confidence 4456899999999999999999999999999999999987421 137899999999999999999999999999999999
Q ss_pred eeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee----------------------
Q 011733 341 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV---------------------- 398 (478)
Q Consensus 341 RI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv---------------------- 398 (478)
||+|+|+|.+|++|++||+++||+|+++||+|||||+|||+|+||+++||||+|++++
T Consensus 102 RI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~Wi 181 (504)
T PLN02814 102 RLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWT 181 (504)
T ss_pred hcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEE
Confidence 9999998899999999999999999999999999999999999999999999998763
Q ss_pred --------------------------------------------------------------------------------
Q 011733 399 -------------------------------------------------------------------------------- 398 (478)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (478)
T Consensus 182 T~NEP~~~~~~gy~~G~~pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P 261 (504)
T PLN02814 182 TINEATIFAIGSYGQGIRYGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSP 261 (504)
T ss_pred eccccchhhhcccccCcCCCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeec
Confidence
Q ss_pred ---------------------ecCCcccCCchHHhhhhhCCCCCccchhhhhhhcccccceeeccceeeeeecC
Q 011733 399 ---------------------VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKDN 451 (478)
Q Consensus 399 ---------------------~~~P~~fgdYp~~m~~~~GdRLP~FT~eE~~~lkGS~DF~gln~Y~t~y~~~~ 451 (478)
++||+..|+||+.|++.+++++|.||++|.+.|+|++||+|||+|++.++++.
T Consensus 262 ~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~ 335 (504)
T PLN02814 262 YTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNR 335 (504)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccC
Confidence 01444579999999999999999999999999999999999999999999753
No 4
>PLN02849 beta-glucosidase
Probab=100.00 E-value=3.5e-57 Score=481.39 Aligned_cols=190 Identities=67% Similarity=1.237 Sum_probs=175.1
Q ss_pred cccCCCCCCCceehhhhhhhhhcCccCCCCCCCceeeecccCCcccCCCCccccccccChHHHHHHHHcCCCeeeecccc
Q 011733 260 EYTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISW 339 (478)
Q Consensus 260 s~~~~~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~~~~~~~~~gdvA~D~Y~rykeDi~Lmk~lGvnayRFSIsW 339 (478)
++.+.+||++|+||+|||||||||+++++||++|+||.|.+.+.. .++++||||||||+|||+|||+||+|+|||||+|
T Consensus 24 ~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~~-~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsW 102 (503)
T PLN02849 24 DYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRNM-SNGDIACDGYHKYKEDVKLMVETGLDAFRFSISW 102 (503)
T ss_pred CCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCCC-CCCCccccHHHhHHHHHHHHHHcCCCeEEEeccH
Confidence 356678999999999999999999999999999999999875432 4788999999999999999999999999999999
Q ss_pred ceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee---------------------
Q 011733 340 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV--------------------- 398 (478)
Q Consensus 340 sRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv--------------------- 398 (478)
|||+|+|.|.+|++|++||+++|++|+++||+|||||+|||+|+||+++||||+|++++
T Consensus 103 sRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~W 182 (503)
T PLN02849 103 SRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFW 182 (503)
T ss_pred HhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEE
Confidence 99999988899999999999999999999999999999999999999999999999864
Q ss_pred --------------------------------------------------------------------------------
Q 011733 399 -------------------------------------------------------------------------------- 398 (478)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (478)
T Consensus 183 iT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~ 262 (503)
T PLN02849 183 TTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFT 262 (503)
T ss_pred EEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceee
Confidence
Q ss_pred ----------------------ecCCcccCCchHHhhhhhCCCCCccchhhhhhhcccccceeeccceeeeeec
Q 011733 399 ----------------------VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKD 450 (478)
Q Consensus 399 ----------------------~~~P~~fgdYp~~m~~~~GdRLP~FT~eE~~~lkGS~DF~gln~Y~t~y~~~ 450 (478)
++||+..|+||+.|++.+++++|.||++|.+.|+|+.||+|||+|++.+++.
T Consensus 263 P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~ 336 (503)
T PLN02849 263 PSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTN 336 (503)
T ss_pred cCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhccc
Confidence 0234457999999999999999999999999999999999999999999875
No 5
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.7e-56 Score=473.68 Aligned_cols=189 Identities=37% Similarity=0.645 Sum_probs=170.5
Q ss_pred CCCCCCCceehhhhhhhhhcCccCCCCCCCceeeecccC-Ccc---c-------------CCCCccccccccChHHHHHH
Q 011733 263 KNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNV---L-------------GNGDIACDEYHKYKEDVKLM 325 (478)
Q Consensus 263 ~~~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~~~-~~~---~-------------~~gdvA~D~Y~rykeDi~Lm 325 (478)
..+||++|+||+|||||||||+++++||++|+||.|.+. +++ . .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 356999999999999999999999999999999998873 222 1 14788999999999999999
Q ss_pred HHcCCCeeeeccccceeecCCC-CCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee------
Q 011733 326 AKTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------ 398 (478)
Q Consensus 326 k~lGvnayRFSIsWsRI~P~G~-G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv------ 398 (478)
|+||+|+||||||||||+|+|. +.+|++|++||+++||+|+++||+|+|||+|||+|+||+++||||+|++++
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 9999999999999999999984 569999999999999999999999999999999999999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q 011733 399 -------------------------------------------------------------------------------- 398 (478)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (478)
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~~~~~ 242 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCMLAAG 242 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence
Q ss_pred ------------------------ecCCcccCCchHHhhhhhCC--CCCccchhhhhhhc-ccccceeeccceeeeeecC
Q 011733 399 ------------------------VANPLVYGDYPKIMKQNAGS--RLPAFTDHESQQIK-GSADFIGVINYYTVYIKDN 451 (478)
Q Consensus 399 ------------------------~~~P~~fgdYp~~m~~~~Gd--RLP~FT~eE~~~lk-GS~DF~gln~Y~t~y~~~~ 451 (478)
+++|+..|+||+.|++.+++ .+|.||++|.++|| |++||+|||+||+.+++..
T Consensus 243 ~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~ 322 (478)
T PRK09593 243 QYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASGD 322 (478)
T ss_pred eeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccC
Confidence 13677789999999999864 46789999999996 9999999999999999753
No 6
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=3.1e-56 Score=467.63 Aligned_cols=189 Identities=55% Similarity=1.057 Sum_probs=166.2
Q ss_pred CCCCCCCceehhhhhhhhhcCccCCCCCCCceeeecccCC-ccc--CCCCccccccccChHHHHHHHHcCCCeeeecccc
Q 011733 263 KNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAG-NVL--GNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISW 339 (478)
Q Consensus 263 ~~~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~~~~-~~~--~~gdvA~D~Y~rykeDi~Lmk~lGvnayRFSIsW 339 (478)
+.+||++|+||+|||||||||++++|||++|+||.|++.+ ++. .++++||||||||+|||+|||+||+|+|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 4689999999999999999999999999999999999973 332 3588999999999999999999999999999999
Q ss_pred ceeecCC-CCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee--------------------
Q 011733 340 SRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV-------------------- 398 (478)
Q Consensus 340 sRI~P~G-~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv-------------------- 398 (478)
+||+|+| .|.+|++|++||+++|++|+++||+|||||+|||+|+||++ +|||+|++++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999999 89999999999999999999999999999999999999998 8999999975
Q ss_pred --------------------------------------------------------------------------------
Q 011733 399 -------------------------------------------------------------------------------- 398 (478)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (478)
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~~Aa 240 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLSPSPEDDVAAA 240 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESSSSHHHHHHHH
T ss_pred EEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCCccchhhHHHH
Confidence
Q ss_pred ----------ecCCcccCCchHHhhhhhCCC--CCccchhhhhhhcccccceeeccceeeeeecCC
Q 011733 399 ----------VANPLVYGDYPKIMKQNAGSR--LPAFTDHESQQIKGSADFIGVINYYTVYIKDNP 452 (478)
Q Consensus 399 ----------~~~P~~fgdYp~~m~~~~GdR--LP~FT~eE~~~lkGS~DF~gln~Y~t~y~~~~~ 452 (478)
++||+..|+||..|++.++.+ +|.||++|++.|+|+.||+|||+|++.+++..+
T Consensus 241 ~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~ 306 (455)
T PF00232_consen 241 ERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADP 306 (455)
T ss_dssp HHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESS
T ss_pred HHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCc
Confidence 158888999999999999887 999999999999999999999999999998766
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=3.2e-55 Score=462.73 Aligned_cols=185 Identities=38% Similarity=0.738 Sum_probs=168.3
Q ss_pred CCCCCCCceehhhhhhhhhcCccCCCCCCCceeeecccCCcccCCCCccccccccChHHHHHHHHcCCCeeeecccccee
Q 011733 263 KNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRL 342 (478)
Q Consensus 263 ~~~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~~~~~~~~~gdvA~D~Y~rykeDi~Lmk~lGvnayRFSIsWsRI 342 (478)
..+||++|+||+|||||||||+++++||++|+||.|++.... .++++||||||||+|||+|||+||+|+|||||+||||
T Consensus 2 ~~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~-~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI 80 (469)
T PRK13511 2 TKTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYW-FTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRI 80 (469)
T ss_pred CCCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCC-CCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhc
Confidence 356999999999999999999999999999999999874322 2789999999999999999999999999999999999
Q ss_pred ecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee------------------------
Q 011733 343 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------------------------ 398 (478)
Q Consensus 343 ~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv------------------------ 398 (478)
+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++
T Consensus 81 ~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgdVk~W~T~N 159 (469)
T PRK13511 81 FPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPEVKYWTTFN 159 (469)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 9998889999999999999999999999999999999999999986 999999864
Q ss_pred --------------------------------------------------------------------------------
Q 011733 399 -------------------------------------------------------------------------------- 398 (478)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (478)
T Consensus 160 EP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~ 239 (469)
T PRK13511 160 EIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNPEDVRAAELED 239 (469)
T ss_pred chhhhhhcchhhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCHHHHHHHHHHH
Confidence
Q ss_pred ------ecCCcccCCchHHhhhhh-------CCCCCccchhhhhhhcc---cccceeeccceeeeeec
Q 011733 399 ------VANPLVYGDYPKIMKQNA-------GSRLPAFTDHESQQIKG---SADFIGVINYYTVYIKD 450 (478)
Q Consensus 399 ------~~~P~~fgdYp~~m~~~~-------GdRLP~FT~eE~~~lkG---S~DF~gln~Y~t~y~~~ 450 (478)
++||++.|+||+.|++.+ |.++ .||++|.++||+ ++||+|||+|++.+++.
T Consensus 240 ~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l-~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~ 306 (469)
T PRK13511 240 IIHNKFILDATYLGYYSEETMEGVNHILEANGGSL-DIRDEDFEILKAAKDLNDFLGINYYMSDWMRA 306 (469)
T ss_pred HHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCC-CCCHHHHHHHhcCCCCCCEEEechhhcceeec
Confidence 147788999999999865 4556 899999999974 68999999999999875
No 8
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=7.6e-55 Score=459.83 Aligned_cols=185 Identities=35% Similarity=0.664 Sum_probs=168.2
Q ss_pred CCCCCCceehhhhhhhhhcCccCCCCCCCceeeecccCCcccCCCCccccccccChHHHHHHHHcCCCeeeeccccceee
Q 011733 264 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRLI 343 (478)
Q Consensus 264 ~~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~~~~~~~~~gdvA~D~Y~rykeDi~Lmk~lGvnayRFSIsWsRI~ 343 (478)
.+||++|+||+|||||||||+++++||++|+||.+.+.... .++++||||||||+|||+||++||+|+||||||||||+
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~-~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~ 80 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW-YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIF 80 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC-CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhcc
Confidence 46999999999999999999999999999999998864221 26789999999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee-------------------------
Q 011733 344 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------------------------- 398 (478)
Q Consensus 344 P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv------------------------- 398 (478)
|+|.|.+|++|++||+++|++|+++||+|||||+|||+|+||+++ |||+|++++
T Consensus 81 P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgdVk~WiT~NE 159 (467)
T TIGR01233 81 PTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPEVNYWTTFNE 159 (467)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 998889999999999999999999999999999999999999986 999999864
Q ss_pred --------------------------------------------------------------------------------
Q 011733 399 -------------------------------------------------------------------------------- 398 (478)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (478)
T Consensus 160 P~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~ 239 (467)
T TIGR01233 160 IGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDI 239 (467)
T ss_pred hhhhhhccchhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCHHHHHHHHHHHH
Confidence
Q ss_pred -----ecCCcccCCchHHhhhhhCCC------CCccchhhhhhh---cccccceeeccceeeeeec
Q 011733 399 -----VANPLVYGDYPKIMKQNAGSR------LPAFTDHESQQI---KGSADFIGVINYYTVYIKD 450 (478)
Q Consensus 399 -----~~~P~~fgdYp~~m~~~~GdR------LP~FT~eE~~~l---kGS~DF~gln~Y~t~y~~~ 450 (478)
++||+..|+||+.|++.++.+ .|.||++|.+.| +|+.||+|||+|++.+++.
T Consensus 240 ~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~ 305 (467)
T TIGR01233 240 IHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQA 305 (467)
T ss_pred HhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeecc
Confidence 147778899999999977633 377999999999 5999999999999999874
No 9
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=2.1e-54 Score=457.71 Aligned_cols=189 Identities=35% Similarity=0.692 Sum_probs=168.7
Q ss_pred cCCCCCCCceehhhhhhhhhcCccCCCCCCCceeeecc---cC--Ccc-----cC---CCCccccccccChHHHHHHHHc
Q 011733 262 TKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV-----LG---NGDIACDEYHKYKEDVKLMAKT 328 (478)
Q Consensus 262 ~~~~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~---~~--~~~-----~~---~gdvA~D~Y~rykeDi~Lmk~l 328 (478)
.+.+||++|+||+|||||||||+++++||++|+||.|+ +. +++ .+ ++++||||||||+|||+||++|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999998 31 222 11 5689999999999999999999
Q ss_pred CCCeeeeccccceeecCCC-CCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee---------
Q 011733 329 GLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV--------- 398 (478)
Q Consensus 329 GvnayRFSIsWsRI~P~G~-G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv--------- 398 (478)
|+|+|||||+||||+|+|. +.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999984 568999999999999999999999999999999999999999999998763
Q ss_pred --------------------------------------------------------------------------------
Q 011733 399 -------------------------------------------------------------------------------- 398 (478)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (478)
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~~IGi~~~ 241 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLA 241 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence
Q ss_pred --------------------------ecCCcccCCchHHhhhhhCCCC--Cccchhhhhhh-cccccceeeccceeeeee
Q 011733 399 --------------------------VANPLVYGDYPKIMKQNAGSRL--PAFTDHESQQI-KGSADFIGVINYYTVYIK 449 (478)
Q Consensus 399 --------------------------~~~P~~fgdYp~~m~~~~GdRL--P~FT~eE~~~l-kGS~DF~gln~Y~t~y~~ 449 (478)
++||+..|+||+.|++.++++. |.+|++|.+.| +|++||+|||+|++.+++
T Consensus 242 ~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~ 321 (477)
T PRK15014 242 MVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVK 321 (477)
T ss_pred CceeccCCCCHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeec
Confidence 0255567999999999888765 78999999988 599999999999999987
Q ss_pred c
Q 011733 450 D 450 (478)
Q Consensus 450 ~ 450 (478)
.
T Consensus 322 ~ 322 (477)
T PRK15014 322 A 322 (477)
T ss_pred c
Confidence 5
No 10
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=2.9e-53 Score=448.70 Aligned_cols=187 Identities=34% Similarity=0.592 Sum_probs=170.2
Q ss_pred CCCCCCceehhhhhhhhhcCccCCCCCCCceeeecccC-Ccc-------------c---CCCCccccccccChHHHHHHH
Q 011733 264 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNV-------------L---GNGDIACDEYHKYKEDVKLMA 326 (478)
Q Consensus 264 ~~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~~~-~~~-------------~---~~gdvA~D~Y~rykeDi~Lmk 326 (478)
.+||++|+||+|||||||||+++++||++|+||.+++. +++ . .++++||||||||+|||+||+
T Consensus 2 ~~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~ 81 (474)
T PRK09852 2 SVFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMA 81 (474)
T ss_pred CCCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHH
Confidence 46999999999999999999999999999999999883 222 1 146889999999999999999
Q ss_pred HcCCCeeeeccccceeecCCC-CCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee-------
Q 011733 327 KTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------- 398 (478)
Q Consensus 327 ~lGvnayRFSIsWsRI~P~G~-G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv------- 398 (478)
+||+|+|||||+|+||+|+|. +.+|++|++||+++|++|+++||+|||||+|||+|+||+++||||+|++++
T Consensus 82 ~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya 161 (474)
T PRK09852 82 EMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYA 161 (474)
T ss_pred HcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999984 468999999999999999999999999999999999999999999999864
Q ss_pred --------------------------------------------------------------------------------
Q 011733 399 -------------------------------------------------------------------------------- 398 (478)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (478)
T Consensus 162 ~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~~~~~~ 241 (474)
T PRK09852 162 RTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGN 241 (474)
T ss_pred HHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCe
Confidence
Q ss_pred -----------------------ecCCcccCCchHHhhhhhCCC--CCccchhhhhhhcccccceeeccceeeeeec
Q 011733 399 -----------------------VANPLVYGDYPKIMKQNAGSR--LPAFTDHESQQIKGSADFIGVINYYTVYIKD 450 (478)
Q Consensus 399 -----------------------~~~P~~fgdYp~~m~~~~GdR--LP~FT~eE~~~lkGS~DF~gln~Y~t~y~~~ 450 (478)
+++|+..|+||+.|++.++++ +|.||++|.+.|+|+.||+|||+|++.+++.
T Consensus 242 ~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~ 318 (474)
T PRK09852 242 FYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASA 318 (474)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeeccc
Confidence 137777899999999999754 7999999999999999999999999999875
No 11
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.8e-53 Score=448.90 Aligned_cols=164 Identities=34% Similarity=0.674 Sum_probs=152.3
Q ss_pred CCCCCceehhhhhhhhhcCccCCCCCCCceeeecc---cC--Cccc-----C---CCCccccccccChHHHHHHHHcCCC
Q 011733 265 DFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFA---HA--GNVL-----G---NGDIACDEYHKYKEDVKLMAKTGLD 331 (478)
Q Consensus 265 ~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~---~~--~~~~-----~---~gdvA~D~Y~rykeDi~Lmk~lGvn 331 (478)
+||++|+||+|||||||||+++++||++|+||.|. +. +++. + ++++||||||||+|||+|||+||+|
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 69999999999999999999999999999999998 31 2221 1 4688999999999999999999999
Q ss_pred eeeeccccceeecCCC-CCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceeeecCCcccCCchH
Q 011733 332 AYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIVVANPLVYGDYPK 410 (478)
Q Consensus 332 ayRFSIsWsRI~P~G~-G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv~~~P~~fgdYp~ 410 (478)
+|||||+||||+|+|. +.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++ .|.+|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~----~F~~YA~ 158 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLID----FFVRFAE 158 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHH----HHHHHHH
Confidence 9999999999999985 4689999999999999999999999999999999999999999999999986 6999999
Q ss_pred HhhhhhCCCCCccchhhhhhhc
Q 011733 411 IMKQNAGSRLPAFTDHESQQIK 432 (478)
Q Consensus 411 ~m~~~~GdRLP~FT~eE~~~lk 432 (478)
.|+++|||||+.|+|.|++.+-
T Consensus 159 ~~f~~fgdrVk~WiT~NEp~~~ 180 (476)
T PRK09589 159 VVFTRYKDKVKYWMTFNEINNQ 180 (476)
T ss_pred HHHHHhcCCCCEEEEecchhhh
Confidence 9999999999999999998764
No 12
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-51 Score=429.94 Aligned_cols=172 Identities=41% Similarity=0.768 Sum_probs=160.1
Q ss_pred CCCCCCceehhhhhhhhhcCccCCCCCCCceeeecccCC---ccc--CCCCccccccccChHHHHHHHHcCCCeeeeccc
Q 011733 264 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAG---NVL--GNGDIACDEYHKYKEDVKLMAKTGLDAYRFSIS 338 (478)
Q Consensus 264 ~~FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~~~~---~~~--~~gdvA~D~Y~rykeDi~Lmk~lGvnayRFSIs 338 (478)
.+||++|+||+||||+|+||+++.|||++|+||.|.+.. ... .+++.|+||||||+|||+||++||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 579999999999999999999999999999999999943 222 368899999999999999999999999999999
Q ss_pred cceeecCCCC-CCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceeeecCCcccCCchHHhhhhhC
Q 011733 339 WSRLIPNGRG-PVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIVVANPLVYGDYPKIMKQNAG 417 (478)
Q Consensus 339 WsRI~P~G~G-~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv~~~P~~fgdYp~~m~~~~G 417 (478)
||||+|+|.+ .+|++|++||+++||+|+++||+|+|||+|||+|+||+++||||+||++|. .|.+|++.|++++|
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~----~F~~ya~~vf~~f~ 157 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVD----AFARYAATVFERFG 157 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHH----HHHHHHHHHHHHhc
Confidence 9999999865 899999999999999999999999999999999999999999999999997 69999999999999
Q ss_pred CCCCccchhhhhhhccccccee
Q 011733 418 SRLPAFTDHESQQIKGSADFIG 439 (478)
Q Consensus 418 dRLP~FT~eE~~~lkGS~DF~g 439 (478)
|+|..|+|.|++.+-...-|+.
T Consensus 158 dkVk~W~TFNE~n~~~~~~y~~ 179 (460)
T COG2723 158 DKVKYWFTFNEPNVVVELGYLY 179 (460)
T ss_pred CcceEEEEecchhhhhcccccc
Confidence 9999999999998876654443
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=7.4e-51 Score=425.05 Aligned_cols=184 Identities=52% Similarity=1.008 Sum_probs=169.7
Q ss_pred CCCCceehhhhhhhhhcCccCCCCCCCceeeecccC-Ccc-c-CCCCccccccccChHHHHHHHHcCCCeeeecccccee
Q 011733 266 FPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNV-L-GNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRL 342 (478)
Q Consensus 266 FP~~FlwG~AtSA~QvEGa~~~~Grg~SiWD~~~~~-~~~-~-~~gdvA~D~Y~rykeDi~Lmk~lGvnayRFSIsWsRI 342 (478)
||++|+||+||||||+||+++++||++|+||.+.+. +++ . .++++||||||+|+|||++|++||+|+|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 899999999999999999999999999999999874 332 2 2678999999999999999999999999999999999
Q ss_pred ecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCccceee------------------------
Q 011733 343 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------------------------ 398 (478)
Q Consensus 343 ~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~n~~iv------------------------ 398 (478)
+|+|.+.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9998889999999999999999999999999999999999999987 999998753
Q ss_pred --------------------------------------------------------------------------------
Q 011733 399 -------------------------------------------------------------------------------- 398 (478)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (478)
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~ 239 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSPEDVAAARRADG 239 (427)
T ss_pred cCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHH
Confidence
Q ss_pred -----ecCCcccCCchHHhhhhhCCCCCccchhhhhhhcccccceeeccceeeeeecC
Q 011733 399 -----VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKDN 451 (478)
Q Consensus 399 -----~~~P~~fgdYp~~m~~~~GdRLP~FT~eE~~~lkGS~DF~gln~Y~t~y~~~~ 451 (478)
++||+..|+||+.|++.++. +|.||++|.+.|+|++||+|||+|++.+++..
T Consensus 240 ~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 240 LLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAAD 296 (427)
T ss_pred HHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccC
Confidence 13777889999999999984 79999999999999999999999999998753
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.77 E-value=1.6e-19 Score=190.47 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=67.4
Q ss_pred hhchHHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccCCcceeeeEEEecccCCccccchHHHHHHHHhhhc
Q 011733 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVK 246 (478)
Q Consensus 167 Dyl~~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy~~RfGl~~Vdf~~~~~~RtpK~Sak~f~~ii~~ 246 (478)
|-.++.||.+||.+|.+|++|||+|+ ||++|||||| |||+.||++||||++||| .++..|+||+|++||+++|++
T Consensus 378 D~~Ri~yl~~hl~~v~~Ai~dGv~V~-GY~~WSl~Dn---~Ew~~Gy~~rfGl~~VD~-~~~~~R~pK~S~~~y~~~i~~ 452 (455)
T PF00232_consen 378 DDYRIDYLQDHLNQVLKAIEDGVNVR-GYFAWSLLDN---FEWAEGYKKRFGLVYVDF-FDTLKRTPKKSAYWYKDFIRS 452 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EEE-EEEEETSB------BGGGGGGSE--SEEEET-TTTTEEEEBHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhccCCCee-eEeeeccccc---cccccCccCccCceEEcC-CCCcCeeeccHHHHHHHHHHh
Confidence 66789999999999999999999999 9999999999 999999999999999997 666889999999999999999
Q ss_pred cCC
Q 011733 247 RSY 249 (478)
Q Consensus 247 ~~f 249 (478)
|+|
T Consensus 453 ng~ 455 (455)
T PF00232_consen 453 NGF 455 (455)
T ss_dssp TEE
T ss_pred cCC
Confidence 875
No 15
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.76 E-value=7.3e-19 Score=187.12 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=108.5
Q ss_pred cccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcceeeccccCCCCCCCCCCceeEEeccchh
Q 011733 89 GDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (478)
Q Consensus 89 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (478)
...+.+.|+|=|.+-.-|.+-+|+. +|.+|.=|+++ | +.|.-.+. ++... .-.|+
T Consensus 380 ~~~~~~~~~v~P~Glr~~L~yiK~~----Y~np~iyItEN----------G---~~d~~~~~------~~~~~--~l~D~ 434 (524)
T KOG0626|consen 380 PKAGSDWLPVYPWGLRKLLNYIKDK----YGNPPIYITEN----------G---FDDLDGGT------KSLEV--ALKDT 434 (524)
T ss_pred ccccccceeeccHHHHHHHHHHHhh----cCCCcEEEEeC----------C---CCcccccc------cchhh--hhcch
Confidence 3457889999999999999999999 99999888877 2 23332221 11111 12477
Q ss_pred chHHHHHHHHHHHHhccc-CCcEEEeccccceecccccccccccCCcceeeeEEEecccCCccccchHHHHHHHHhhhcc
Q 011733 169 LSPKYLNRTLPELARVSV-DGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVKR 247 (478)
Q Consensus 169 l~~~YLn~~L~ai~r~~~-DGv~V~~GY~~WSlmDn~~~fEW~~Gy~~RfGl~~Vdf~~~~~~RtpK~Sak~f~~ii~~~ 247 (478)
.++.|+..+|.++++|+. |||||+ ||++|||||| |||..||+.|||+++|||.++ ++|.||.|++||++.++.+
T Consensus 435 ~Ri~Y~~~~L~~~~kAi~~dgvnv~-GYf~WSLmDn---fEw~~Gy~~RFGlyyVDf~d~-l~R~pK~Sa~wy~~fl~~~ 509 (524)
T KOG0626|consen 435 KRIEYLQNHLQAVLKAIKEDGVNVK-GYFVWSLLDN---FEWLDGYKVRFGLYYVDFKDP-LKRYPKLSAKWYKKFLKGK 509 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcee-eEEEeEcccc---hhhhcCcccccccEEEeCCCC-CcCCchhHHHHHHHHHcCC
Confidence 778888888888888875 999999 9999999999 999999999999999999998 9999999999999999877
Q ss_pred CCC
Q 011733 248 SYK 250 (478)
Q Consensus 248 ~fp 250 (478)
..+
T Consensus 510 ~~~ 512 (524)
T KOG0626|consen 510 VKP 512 (524)
T ss_pred CCC
Confidence 654
No 16
>PLN02849 beta-glucosidase
Probab=99.76 E-value=5.1e-19 Score=189.50 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=75.1
Q ss_pred chhchHHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccCCcceeeeEEEecccCCccccchHHHHHHHHhhh
Q 011733 166 VDYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASV 245 (478)
Q Consensus 166 ~Dyl~~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy~~RfGl~~Vdf~~~~~~RtpK~Sak~f~~ii~ 245 (478)
.|..++.||.+||.++++|++|||+|+ ||++|||||| |||..||++|||+++|||.+++.+|+||+|++||+++|+
T Consensus 406 ~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~-GY~~WSl~Dn---fEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~ 481 (503)
T PLN02849 406 KDTPRIEYLHAYIGAVLKAVRNGSDTR-GYFVWSFMDL---YELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLK 481 (503)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchhh---hchhccccCccceEEECCCCCCcceecccHHHHHHHHHH
Confidence 477789999999999999999999999 9999999999 999999999999999999988778999999999999999
Q ss_pred ccC
Q 011733 246 KRS 248 (478)
Q Consensus 246 ~~~ 248 (478)
+++
T Consensus 482 ~~~ 484 (503)
T PLN02849 482 GNS 484 (503)
T ss_pred hCC
Confidence 875
No 17
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.75 E-value=5.5e-19 Score=187.66 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=73.6
Q ss_pred hhchHHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccCCcceeeeEEEecccCCccccchHHHHHHHHhhhc
Q 011733 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVK 246 (478)
Q Consensus 167 Dyl~~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy~~RfGl~~Vdf~~~~~~RtpK~Sak~f~~ii~~ 246 (478)
|.+++.||.+||.++.+|++|||+|+ ||++|||||| |||..||++||||++|||.++ .|+||+|++||+++|++
T Consensus 390 D~~Ri~Yl~~hl~~~~~Ai~dGv~v~-GY~~WSl~Dn---~Ew~~Gy~~RfGLv~VD~~t~--~R~~K~S~~wy~~ii~~ 463 (467)
T TIGR01233 390 DDGRIDYVKQHLEVLSDAIADGANVK-GYFIWSLMDV---FSWSNGYEKRYGLFYVDFDTQ--ERYPKKSAHWYKKLAET 463 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchhh---hchhccccCccceEEECCCCC--ccccccHHHHHHHHHHh
Confidence 66789999999999999999999999 9999999999 999999999999999999885 59999999999999998
Q ss_pred cCCC
Q 011733 247 RSYK 250 (478)
Q Consensus 247 ~~fp 250 (478)
+.++
T Consensus 464 ~~~~ 467 (467)
T TIGR01233 464 QVIE 467 (467)
T ss_pred cCCC
Confidence 8764
No 18
>PLN02814 beta-glucosidase
Probab=99.75 E-value=8.3e-19 Score=187.93 Aligned_cols=82 Identities=6% Similarity=-0.010 Sum_probs=76.8
Q ss_pred chhchHHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccCCcceeeeEEEecccCCccccchHHHHHHHHhhh
Q 011733 166 VDYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASV 245 (478)
Q Consensus 166 ~Dyl~~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy~~RfGl~~Vdf~~~~~~RtpK~Sak~f~~ii~ 245 (478)
.|..++.||.+||.++.+|++|||+|+ ||++|||||| |||..||++||||++|||.+++.+|+||+|++||+++|+
T Consensus 406 ~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~-GY~~WSllDn---fEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~ 481 (504)
T PLN02814 406 QDTPRVEFIQAYIGAVLNAIKNGSDTR-GYFVWSMIDL---YELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLN 481 (504)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchhh---hchhccccCccceEEECCCCCCcceeeecHHHHHHHHHh
Confidence 377789999999999999999999999 9999999999 999999999999999999988788999999999999998
Q ss_pred ccCCCC
Q 011733 246 KRSYKP 251 (478)
Q Consensus 246 ~~~fpp 251 (478)
+...+.
T Consensus 482 ~~~~~~ 487 (504)
T PLN02814 482 GTIDVA 487 (504)
T ss_pred cCCChh
Confidence 775555
No 19
>PLN02998 beta-glucosidase
Probab=99.75 E-value=7.7e-19 Score=187.90 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=74.2
Q ss_pred chhchHHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccCCcceeeeEEEecccCCccccchHHHHHHHHhhh
Q 011733 166 VDYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASV 245 (478)
Q Consensus 166 ~Dyl~~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy~~RfGl~~Vdf~~~~~~RtpK~Sak~f~~ii~ 245 (478)
.|..++.||.+||.++.+|++|||+|+ ||++|||||| |||..||++||||++|||.+++..|+||+|++||+++|+
T Consensus 411 ~D~~Ri~Yl~~hl~~~~kAi~dGv~V~-GY~~WSl~Dn---fEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~ 486 (497)
T PLN02998 411 VDTTRVKYLSSYIKAVLHSLRKGSDVK-GYFQWSLMDV---FELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLK 486 (497)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchhh---hchhccccCccceEEECCCCCCcceecccHHHHHHHHHh
Confidence 366789999999999999999999999 9999999999 999999999999999999987788999999999999998
Q ss_pred cc
Q 011733 246 KR 247 (478)
Q Consensus 246 ~~ 247 (478)
++
T Consensus 487 ~~ 488 (497)
T PLN02998 487 GT 488 (497)
T ss_pred cc
Confidence 76
No 20
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.73 E-value=1.9e-18 Score=183.95 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=75.4
Q ss_pred hhchHHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccC-CcceeeeEEEecccC---CccccchHHHHHHHH
Q 011733 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRP-AKLRSSTWWIRYFLQ---NSLEENEVAAKKFDQ 242 (478)
Q Consensus 167 Dyl~~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~G-y~~RfGl~~Vdf~~~---~~~RtpK~Sak~f~~ 242 (478)
|.+++.||++||.++.+|++|||+|+ ||++|||||| |||..| |++||||++|||.++ +..|+||+|++||++
T Consensus 389 D~~Ri~Yl~~hl~~~~~Ai~dGv~V~-GY~~WSl~Dn---~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ 464 (474)
T PRK09852 389 DDYRISYLREHIRAMGEAIADGIPLM-GYTTWGCIDL---VSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKK 464 (474)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEE-EEEeeccccc---ccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHH
Confidence 66789999999999999999999999 9999999999 999999 999999999999986 678999999999999
Q ss_pred hhhccCCC
Q 011733 243 ASVKRSYK 250 (478)
Q Consensus 243 ii~~~~fp 250 (478)
+|++++.+
T Consensus 465 ii~~ng~~ 472 (474)
T PRK09852 465 VIASNGED 472 (474)
T ss_pred HHHhCCcc
Confidence 99987753
No 21
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.73 E-value=1.8e-18 Score=183.78 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=73.3
Q ss_pred hhchHHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccCCcceeeeEEEecccCCccccchHHHHHHHHhhhc
Q 011733 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVK 246 (478)
Q Consensus 167 Dyl~~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy~~RfGl~~Vdf~~~~~~RtpK~Sak~f~~ii~~ 246 (478)
|..++.||.+||.++.+|++|||+|+ ||++|||||| |||+.||+.||||++|||.++ .|+||+|++||+++|++
T Consensus 392 D~~Ri~yl~~hl~~~~~Ai~dGv~v~-GY~~WSl~Dn---fEW~~Gy~~RfGl~~VD~~~~--~R~pK~S~~wy~~~i~~ 465 (469)
T PRK13511 392 DDKRIDYVKQHLEVISDAISDGANVK-GYFIWSLMDV---FSWSNGYEKRYGLFYVDFETQ--ERYPKKSAYWYKKLAET 465 (469)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEE-EEeecccccc---cchhcCccCccceEEECCCcC--ccccccHHHHHHHHHHh
Confidence 66789999999999999999999999 9999999999 999999999999999999885 59999999999999998
Q ss_pred cCC
Q 011733 247 RSY 249 (478)
Q Consensus 247 ~~f 249 (478)
+++
T Consensus 466 ~~~ 468 (469)
T PRK13511 466 KVI 468 (469)
T ss_pred CCC
Confidence 875
No 22
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.72 E-value=3e-18 Score=182.49 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=73.7
Q ss_pred hhchHHHHHHHHHHHHhcc-cCCcEEEeccccceecccccccccccC-CcceeeeEEEecccC---CccccchHHHHHHH
Q 011733 167 DYLSPKYLNRTLPELARVS-VDGVVIFAGYPGQHRAKVSELSKFGRP-AKLRSSTWWIRYFLQ---NSLEENEVAAKKFD 241 (478)
Q Consensus 167 Dyl~~~YLn~~L~ai~r~~-~DGv~V~~GY~~WSlmDn~~~fEW~~G-y~~RfGl~~Vdf~~~---~~~RtpK~Sak~f~ 241 (478)
|..++.||.+||.++.+|+ +|||+|+ ||++|||||| |||..| |++||||++|||.++ ++.|+||+|++||+
T Consensus 391 D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~-GY~~WSl~Dn---~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~ 466 (476)
T PRK09589 391 DHYRIDYLAAHIREMKKAVVEDGVDLM-GYTPWGCIDL---VSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYR 466 (476)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeE-EEeecccccc---ccccCCccccceeeEEEcCCCCCCcccccccccHHHHHH
Confidence 6678999999999999999 8999999 9999999999 999999 999999999999987 67899999999999
Q ss_pred HhhhccC
Q 011733 242 QASVKRS 248 (478)
Q Consensus 242 ~ii~~~~ 248 (478)
++|++++
T Consensus 467 ~~i~~ng 473 (476)
T PRK09589 467 DVIANNG 473 (476)
T ss_pred HHHHhcC
Confidence 9998764
No 23
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.71 E-value=3.9e-18 Score=181.69 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=73.9
Q ss_pred hhchHHHHHHHHHHHHhccc-CCcEEEeccccceecccccccccccC-CcceeeeEEEecccC---CccccchHHHHHHH
Q 011733 167 DYLSPKYLNRTLPELARVSV-DGVVIFAGYPGQHRAKVSELSKFGRP-AKLRSSTWWIRYFLQ---NSLEENEVAAKKFD 241 (478)
Q Consensus 167 Dyl~~~YLn~~L~ai~r~~~-DGv~V~~GY~~WSlmDn~~~fEW~~G-y~~RfGl~~Vdf~~~---~~~RtpK~Sak~f~ 241 (478)
|..++.||.+||.+|.+|++ |||+|+ ||++|||||| |||..| |++||||++|||.++ +.+|+||+|++||+
T Consensus 392 D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~-GY~~WSl~Dn---fEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~ 467 (477)
T PRK15014 392 DDYRIDYLRAHIEEMKKAVTYDGVDLM-GYTPWGCIDC---VSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYK 467 (477)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchhh---hcccCCCccCccceEEECCCCCCCcccceecccHHHHHH
Confidence 67789999999999999995 999999 9999999999 999999 999999999999987 56899999999999
Q ss_pred HhhhccCC
Q 011733 242 QASVKRSY 249 (478)
Q Consensus 242 ~ii~~~~f 249 (478)
++|++++.
T Consensus 468 ~ii~~ng~ 475 (477)
T PRK15014 468 EVIASNGE 475 (477)
T ss_pred HHHHhcCC
Confidence 99987653
No 24
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.71 E-value=4.9e-18 Score=180.91 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=74.8
Q ss_pred hhchHHHHHHHHHHHHhccc-CCcEEEeccccceecccccccccccC-CcceeeeEEEecccC---CccccchHHHHHHH
Q 011733 167 DYLSPKYLNRTLPELARVSV-DGVVIFAGYPGQHRAKVSELSKFGRP-AKLRSSTWWIRYFLQ---NSLEENEVAAKKFD 241 (478)
Q Consensus 167 Dyl~~~YLn~~L~ai~r~~~-DGv~V~~GY~~WSlmDn~~~fEW~~G-y~~RfGl~~Vdf~~~---~~~RtpK~Sak~f~ 241 (478)
|.+++.||.+||.++.+|++ |||+|+ ||++|||||| |||..| |++||||++|||.++ +++|+||+|++||+
T Consensus 392 D~~Ri~yl~~hl~~~~~Ai~~dGv~v~-GY~~WSl~Dn---~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~ 467 (478)
T PRK09593 392 DDYRIDYLAAHIKAMRDAINEDGVELL-GYTTWGCIDL---VSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYK 467 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEE-EEeeccchHh---hcccCCCccCeeceEEECCCCCCCcccceecccHHHHHH
Confidence 67789999999999999995 999999 9999999999 999999 999999999999876 67899999999999
Q ss_pred HhhhccCCC
Q 011733 242 QASVKRSYK 250 (478)
Q Consensus 242 ~ii~~~~fp 250 (478)
++|++++.+
T Consensus 468 ~ii~~~~~~ 476 (478)
T PRK09593 468 KVIASNGED 476 (478)
T ss_pred HHHHhCCcC
Confidence 999887653
No 25
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=5.8e-17 Score=171.15 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=73.5
Q ss_pred hhchHHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccCCcceeeeEEEecccCCccccchHHHHHHHHhhhc
Q 011733 167 DYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKFDQASVK 246 (478)
Q Consensus 167 Dyl~~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy~~RfGl~~Vdf~~~~~~RtpK~Sak~f~~ii~~ 246 (478)
|.++++||.+||.+|++|++|||+|+ ||+.|++||| ++|..||++|||+++||+.++ ..|++|+|+.||+++|++
T Consensus 378 DdyRI~Yl~~Hl~~v~~AI~dGv~v~-GY~~Ws~iD~---~sw~~gy~kRYGli~VD~~~~-~~R~~KkS~~WyK~vi~s 452 (460)
T COG2723 378 DDYRIDYLKEHLKAVKKAIEDGVDVR-GYFAWSLIDN---YSWANGYKKRYGLVYVDYDTD-LERTPKKSFYWYKEVIES 452 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCcc-cceecccccc---cchhhccccccccEEEccccc-ceeeecCceeeeHHHHhc
Confidence 56689999999999999999999999 9999999999 999999999999999999886 569999999999999998
Q ss_pred cC
Q 011733 247 RS 248 (478)
Q Consensus 247 ~~ 248 (478)
|+
T Consensus 453 ng 454 (460)
T COG2723 453 NG 454 (460)
T ss_pred CC
Confidence 87
No 26
>TIGR03356 BGL beta-galactosidase.
Probab=99.60 E-value=3e-16 Score=165.03 Aligned_cols=69 Identities=23% Similarity=0.160 Sum_probs=65.0
Q ss_pred chhchHHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccCCcceeeeEEEecccCCccccchHHHHHH
Q 011733 166 VDYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEENEVAAKKF 240 (478)
Q Consensus 166 ~Dyl~~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy~~RfGl~~Vdf~~~~~~RtpK~Sak~f 240 (478)
.|..++.||.+||.++++|++|||+|+ ||++||+||| |||..||++||||++|||.++ .|+||+|++||
T Consensus 359 ~D~~Ri~yl~~hl~~~~~Ai~dGv~v~-GY~~Wsl~Dn---~ew~~gy~~rfGl~~VD~~~~--~R~~K~S~~wy 427 (427)
T TIGR03356 359 HDPERIAYLRDHLAALARAIEEGVDVR-GYFVWSLLDN---FEWAEGYSKRFGLVHVDYETQ--KRTPKDSAKWY 427 (427)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEE-EEEecccccc---cchhcccccccceEEECCCCC--cccccceeeeC
Confidence 377789999999999999999999999 9999999999 999999999999999999875 59999999886
No 27
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=98.47 E-value=1e-07 Score=98.37 Aligned_cols=74 Identities=24% Similarity=0.505 Sum_probs=60.5
Q ss_pred ccChHHHHHHHHcCCCeeee-ccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcccccccCCCc
Q 011733 316 HKYKEDVKLMAKTGLDAYRF-SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWI 393 (478)
Q Consensus 316 ~rykeDi~Lmk~lGvnayRF-SIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~yGGW~ 393 (478)
..+++|+++|+++|+|..|+ .++|++|+|. +|.+| +.+++++|+.+.++||+.++.+.+...|.||.++++..+
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 56899999999999999996 5799999999 79998 788999999999999999999999999999988765443
No 28
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.64 E-value=0.0001 Score=71.00 Aligned_cols=66 Identities=20% Similarity=0.377 Sum_probs=57.9
Q ss_pred cChHHHHHHHHcCCCeeeeccccceee-cCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcc
Q 011733 317 KYKEDVKLMAKTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQA 384 (478)
Q Consensus 317 rykeDi~Lmk~lGvnayRFSIsWsRI~-P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~w 384 (478)
..++|++.|+++|+|+.|+-+.|..++ |...+.++...++.++++|+.+.++||.++|++++. |.|
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w 88 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGW 88 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTC
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccc
Confidence 578999999999999999999998888 443346899999999999999999999999999986 555
No 29
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.57 E-value=7.5e-05 Score=72.14 Aligned_cols=101 Identities=25% Similarity=0.395 Sum_probs=88.0
Q ss_pred ccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcc-eeeccccCCCC-CCCCCCceeEEeccchhc
Q 011733 92 MLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGI-VRVADIKFPLP-YRAKSFSLVIVSDAVDYL 169 (478)
Q Consensus 92 ~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~-~~~~d~~~~~~-~r~~sfs~~~vsd~~Dyl 169 (478)
-.+||.+|-......+.|.++.+++++|||- .+.+..+-|+||+ |--.|+.-.|+ |--+||..||.|.++..+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEi-----d~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEI-----DPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEec-----CHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 4799999999999999999999999999872 2345778899999 99999999997 999999999999999886
Q ss_pred hHHHHHHHHHHHHhcccCCcEEEeccccce
Q 011733 170 SPKYLNRTLPELARVSVDGVVIFAGYPGQH 199 (478)
Q Consensus 170 ~~~YLn~~L~ai~r~~~DGv~V~~GY~~WS 199 (478)
++-.++|.++.|+-..+++.|+-+-.|.
T Consensus 89 --~~P~~vL~EmlRVgr~~IVsFPNFg~W~ 116 (193)
T PF07021_consen 89 --RRPDEVLEEMLRVGRRAIVSFPNFGHWR 116 (193)
T ss_pred --hHHHHHHHHHHHhcCeEEEEecChHHHH
Confidence 5678899999999999999886666664
No 30
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=4.4e-05 Score=85.34 Aligned_cols=74 Identities=16% Similarity=0.371 Sum_probs=64.2
Q ss_pred ccChHHHHHHHHcCCCeeeecc-ccceeecCCCCCCChhHHHHHHHH-HHHHHHCCCcceEee-ccCCCCcccccccCCC
Q 011733 316 HKYKEDVKLMAKTGLDAYRFSI-SWSRLIPNGRGPVNPKGLQYYNNL-INELISYGIQPHVTL-HHSDLPQALEDEYGGW 392 (478)
Q Consensus 316 ~rykeDi~Lmk~lGvnayRFSI-sWsRI~P~G~G~vN~egv~~Y~~l-Id~L~~~GIeP~VTL-~H~dlP~wL~d~yGGW 392 (478)
..|++|++.||++|+|..|.++ +|++++|+ +|.+|- .+.+.. ++.+.+.||..++.. .....|.|+.++|+-|
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fdf---~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFDF---TWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccCc---ccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 4589999999999999999966 99999999 799984 477777 999999999999988 7799999998776444
Q ss_pred c
Q 011733 393 I 393 (478)
Q Consensus 393 ~ 393 (478)
+
T Consensus 106 L 106 (673)
T COG1874 106 L 106 (673)
T ss_pred e
Confidence 3
No 31
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=94.61 E-value=0.022 Score=56.26 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=65.9
Q ss_pred cccceeecCCCCCCChhHHHHHHHHHHHHHHCCCc--ceEeeccCCCCcccccccCCCccceeeecCCcccCCchHHhhh
Q 011733 337 ISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQ--PHVTLHHSDLPQALEDEYGGWINRMIVVANPLVYGDYPKIMKQ 414 (478)
Q Consensus 337 IsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIe--P~VTL~H~dlP~wL~d~yGGW~n~~iv~~~P~~fgdYp~~m~~ 414 (478)
+.|++++|. +|.+| .+-.+.+++.++++||+ ..+.+.|...|.|+... + .++.. -.+.+|-+.+.+
T Consensus 1 ~kW~~~ep~-~G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~----~~~~~~i~~v~~ 68 (254)
T smart00633 1 MKWDSTEPS-RGQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLL----ARLENHIKTVVG 68 (254)
T ss_pred CCcccccCC-CCccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHH----HHHHHHHHHHHH
Confidence 369999998 78999 56677799999999999 56667888999998642 2 12221 146789999999
Q ss_pred hhCCCCCccchhhhhhhcc
Q 011733 415 NAGSRLPAFTDHESQQIKG 433 (478)
Q Consensus 415 ~~GdRLP~FT~eE~~~lkG 433 (478)
++++++..|..-|++.-.+
T Consensus 69 ry~g~i~~wdV~NE~~~~~ 87 (254)
T smart00633 69 RYKGKIYAWDVVNEALHDN 87 (254)
T ss_pred HhCCcceEEEEeeecccCC
Confidence 9999999998888876543
No 32
>PLN02161 beta-amylase
Probab=93.27 E-value=0.16 Score=55.73 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=62.8
Q ss_pred ccccccChHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-cC-----------
Q 011733 312 CDEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-HS----------- 379 (478)
Q Consensus 312 ~D~Y~rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H~----------- 379 (478)
..+....+..++.+|.+||+..-.-+=|.-+++.+++++| ...|+++++..++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 3556668889999999999999999999999999889999 68899999999999988766664 53
Q ss_pred CCCccccc
Q 011733 380 DLPQALED 387 (478)
Q Consensus 380 dlP~wL~d 387 (478)
.||+|+.+
T Consensus 190 pLP~WV~~ 197 (531)
T PLN02161 190 SLPLWIRE 197 (531)
T ss_pred cCCHHHHh
Confidence 49999875
No 33
>PLN02803 beta-amylase
Probab=92.79 E-value=0.25 Score=54.46 Aligned_cols=69 Identities=16% Similarity=0.310 Sum_probs=59.8
Q ss_pred ccChHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-c-----------CCCCc
Q 011733 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------SDLPQ 383 (478)
Q Consensus 316 ~rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H-----------~dlP~ 383 (478)
...+..++.+|.+||+..-.-+=|.-+++.+++++| ...|+++++..++.|++..+.|. | -.||+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 346789999999999999999999999999889999 68899999999999988766653 4 35999
Q ss_pred cccc
Q 011733 384 ALED 387 (478)
Q Consensus 384 wL~d 387 (478)
|+.+
T Consensus 184 WV~e 187 (548)
T PLN02803 184 WVLE 187 (548)
T ss_pred HHHH
Confidence 9875
No 34
>PLN02801 beta-amylase
Probab=92.58 E-value=0.3 Score=53.60 Aligned_cols=69 Identities=19% Similarity=0.421 Sum_probs=59.6
Q ss_pred ccChHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-c-----------CCCCc
Q 011733 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------SDLPQ 383 (478)
Q Consensus 316 ~rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H-----------~dlP~ 383 (478)
...+..++.+|.+||+..-.-+=|.-++..+++++| ...|+++++.++++|++..+.+. | ..||+
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 113 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQ 113 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 347889999999999999999999999999888999 68899999999999988666553 4 35999
Q ss_pred cccc
Q 011733 384 ALED 387 (478)
Q Consensus 384 wL~d 387 (478)
|+.+
T Consensus 114 WV~~ 117 (517)
T PLN02801 114 WVRD 117 (517)
T ss_pred HHHH
Confidence 9875
No 35
>PLN00197 beta-amylase; Provisional
Probab=92.34 E-value=0.33 Score=53.73 Aligned_cols=68 Identities=18% Similarity=0.361 Sum_probs=59.7
Q ss_pred cChHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-c-----------CCCCcc
Q 011733 317 KYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------SDLPQA 384 (478)
Q Consensus 317 rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H-----------~dlP~w 384 (478)
..+..++.+|.+||+..-.-+=|.-+++.+++++| ...|+++++..++.|++..+.+. | ..||+|
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~W 204 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKW 204 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHH
Confidence 47889999999999999999999999999889999 68899999999999988766653 4 359999
Q ss_pred ccc
Q 011733 385 LED 387 (478)
Q Consensus 385 L~d 387 (478)
+.+
T Consensus 205 V~~ 207 (573)
T PLN00197 205 VVE 207 (573)
T ss_pred HHH
Confidence 875
No 36
>PLN02705 beta-amylase
Probab=92.24 E-value=0.32 Score=54.52 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=60.7
Q ss_pred ccccChHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-c-----------CCC
Q 011733 314 EYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------SDL 381 (478)
Q Consensus 314 ~Y~rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H-----------~dl 381 (478)
+-...+..++-+|.+||+..-.-+=|.-++..+++++| ...|+++++..++.|++..+.|. | ..|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 33457889999999999999999999999999888999 68899999999999988766553 4 259
Q ss_pred Cccccc
Q 011733 382 PQALED 387 (478)
Q Consensus 382 P~wL~d 387 (478)
|+|+.+
T Consensus 343 P~WV~e 348 (681)
T PLN02705 343 PQWVLE 348 (681)
T ss_pred CHHHHH
Confidence 999875
No 37
>PLN02905 beta-amylase
Probab=91.35 E-value=0.41 Score=53.83 Aligned_cols=73 Identities=12% Similarity=0.269 Sum_probs=62.6
Q ss_pred ccccccChHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec-c-----------C
Q 011733 312 CDEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------S 379 (478)
Q Consensus 312 ~D~Y~rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~-H-----------~ 379 (478)
.......+..+..+|.+||+..-.-+=|.-+++.+++++| ...|+++++..++.|++..+.|. | .
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3556668889999999999999999999999999889999 68899999999999988766653 4 3
Q ss_pred CCCccccc
Q 011733 380 DLPQALED 387 (478)
Q Consensus 380 dlP~wL~d 387 (478)
.||+|+.+
T Consensus 359 PLP~WV~e 366 (702)
T PLN02905 359 PLPHWVAE 366 (702)
T ss_pred cCCHHHHH
Confidence 69999875
No 38
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=90.97 E-value=0.18 Score=54.00 Aligned_cols=70 Identities=16% Similarity=0.357 Sum_probs=55.9
Q ss_pred cccChHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEee-cc-----------CCCC
Q 011733 315 YHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------SDLP 382 (478)
Q Consensus 315 Y~rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL-~H-----------~dlP 382 (478)
++..+.+++.+|.+||+..-.-+-|.-+++.|++++| ...|+++++.+++.|++..+.| +| ..||
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 4478899999999999999999999999999888898 7889999999999999877766 34 3689
Q ss_pred ccccc
Q 011733 383 QALED 387 (478)
Q Consensus 383 ~wL~d 387 (478)
.|+.+
T Consensus 92 ~Wv~~ 96 (402)
T PF01373_consen 92 SWVWE 96 (402)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
No 39
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=90.89 E-value=0.4 Score=38.04 Aligned_cols=89 Identities=22% Similarity=0.292 Sum_probs=64.0
Q ss_pred eEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcc--eeeccccCCCCCCCCCCceeEEeccchhchHHH
Q 011733 96 LHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGI--VRVADIKFPLPYRAKSFSLVIVSDAVDYLSPKY 173 (478)
Q Consensus 96 l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~--~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~~Y 173 (478)
|-+|..+......|.+....+.+|+|+..- .-..|+...++.- ++.+|+. .||+...||..|+......++ .-
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~--~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~~--~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE--MLEQARKRLKNEGVSFRQGDAE-DLPFPDNSFDVVFSNSVLHHL--ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH--HHHHHHHHTTTSTEEEEESBTT-SSSS-TT-EEEEEEESHGGGS--SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH--HHHHHHhcccccCchheeehHH-hCccccccccccccccceeec--cC
Confidence 567888888888888887888999988652 3445555554443 7888865 459999999999999999887 66
Q ss_pred HHHHHHHHHhcccCCc
Q 011733 174 LNRTLPELARVSVDGV 189 (478)
Q Consensus 174 Ln~~L~ai~r~~~DGv 189 (478)
..+.+.++.|+...|-
T Consensus 76 ~~~~l~e~~rvLk~gG 91 (95)
T PF08241_consen 76 PEAALREIYRVLKPGG 91 (95)
T ss_dssp HHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHcCcCe
Confidence 6777888887776653
No 40
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=88.26 E-value=0.41 Score=49.38 Aligned_cols=72 Identities=15% Similarity=0.284 Sum_probs=51.6
Q ss_pred cChHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeec--------cCCCCcccccc
Q 011733 317 KYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HSDLPQALEDE 388 (478)
Q Consensus 317 rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~--------H~dlP~wL~d~ 388 (478)
.|++-++.||++|+|+.-+=+.|.-.+|. +|.+|-+|..=.+.+|+.+.++|+..++-.= --.+|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 47788999999999999999999999999 7999999887888999999999998655432 12389999875
Q ss_pred c
Q 011733 389 Y 389 (478)
Q Consensus 389 y 389 (478)
.
T Consensus 104 ~ 104 (319)
T PF01301_consen 104 P 104 (319)
T ss_dssp T
T ss_pred c
Confidence 3
No 41
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=88.11 E-value=1.4 Score=46.76 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=55.7
Q ss_pred cccccccC-----hHHHHHHHHcCCCeeeeccccceeecCC--CCCCC-hhHHHHHHHHHHHHHHCCCcceEeeccCCCC
Q 011733 311 ACDEYHKY-----KEDVKLMAKTGLDAYRFSISWSRLIPNG--RGPVN-PKGLQYYNNLINELISYGIQPHVTLHHSDLP 382 (478)
Q Consensus 311 A~D~Y~ry-----keDi~Lmk~lGvnayRFSIsWsRI~P~G--~G~vN-~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP 382 (478)
.--....| ++|+..||+.|+|+.|.-|.|-.+.+.+ ...+. ...+++-+++|+...+.||..++.||+..-.
T Consensus 63 ~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~ 142 (407)
T COG2730 63 QGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGG 142 (407)
T ss_pred cccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCC
Confidence 33445566 8999999999999999999855555432 22232 3445588999999999999999999998844
Q ss_pred cc
Q 011733 383 QA 384 (478)
Q Consensus 383 ~w 384 (478)
+-
T Consensus 143 ~~ 144 (407)
T COG2730 143 NN 144 (407)
T ss_pred CC
Confidence 33
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=86.65 E-value=1.1 Score=43.15 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=70.5
Q ss_pred cceeEeCCchhHHHhhhhcc-ccccccCCCccccccchhhhhhhhhhcceeeccccCCCCCCCCCCceeEEeccchhchH
Q 011733 93 LKVLHVGPETCSVVSKLLKE-EDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYLSP 171 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~-~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~ 171 (478)
.+||-||-.|-.....|.+. ...+..|||+.+ ++-..|+.-..+--+..+|+.- |+...+|.+|+....+-++.+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhhCCH
Confidence 57999999999888888765 457788887653 1222333322333456778765 788899999998888888888
Q ss_pred HHHHHHHHHHHhcccCCcEEEeccc
Q 011733 172 KYLNRTLPELARVSVDGVVIFAGYP 196 (478)
Q Consensus 172 ~YLn~~L~ai~r~~~DGv~V~~GY~ 196 (478)
..+.+.+.++.|+.. +..+...+.
T Consensus 121 ~~~~~~l~el~r~~~-~~v~i~e~~ 144 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-RYILIAEYY 144 (204)
T ss_pred HHHHHHHHHHHhhcC-cEEEEEEee
Confidence 999999999988873 444442443
No 43
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=83.37 E-value=2.9 Score=39.24 Aligned_cols=100 Identities=25% Similarity=0.387 Sum_probs=62.3
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcc-eeeccccCCC-CCCCCCCceeEEeccchhch
Q 011733 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGI-VRVADIKFPL-PYRAKSFSLVIVSDAVDYLS 170 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~-~~~~d~~~~~-~~r~~sfs~~~vsd~~Dyl~ 170 (478)
.+||.||..+..+...|.+.-...++|||+-+ +.-..|+ ++|+ +..+|+.-.+ |+...+|..++....+.++.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~---~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACV---ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHH---HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 37999999999887766655556678887642 1111121 2332 3457775445 47778999999998877762
Q ss_pred HHHHHHHHHHHHhcccCCcEEEeccccce
Q 011733 171 PKYLNRTLPELARVSVDGVVIFAGYPGQH 199 (478)
Q Consensus 171 ~~YLn~~L~ai~r~~~DGv~V~~GY~~WS 199 (478)
-..++|+++.|+...++..+..+..|+
T Consensus 90 --d~~~~l~e~~r~~~~~ii~~p~~~~~~ 116 (194)
T TIGR02081 90 --NPEEILDEMLRVGRHAIVSFPNFGYWR 116 (194)
T ss_pred --CHHHHHHHHHHhCCeEEEEcCChhHHH
Confidence 255677777776555544433344444
No 44
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=82.10 E-value=3.3 Score=41.29 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=65.5
Q ss_pred cccchHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccc--cccchhhhhhhhhhcce--eecc
Q 011733 70 VVSCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGIV--RVAD 145 (478)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~--~~~~~~~~~~~~~~g~~--~~~d 145 (478)
++-=+.++..+.-+|++.-=+.-.+||.||..+=.....|.+.-..+..||++-+ ++.+..+++. ...| ..+|
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D 107 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEAND 107 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECC
Confidence 3334444444444444432234468999999876654444433334666666532 2223332221 1223 3467
Q ss_pred ccCCCCCCCCCCceeEEeccchhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 146 IKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 146 ~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
+. .+|+...+|.+++..+.+-+....-..++|..+.++...|-.+.
T Consensus 108 ~~-~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 108 IL-KKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred cc-cCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 64 57787889999998777655433334566666666666664444
No 45
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=78.02 E-value=2.4 Score=37.16 Aligned_cols=89 Identities=27% Similarity=0.311 Sum_probs=59.9
Q ss_pred ccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcceeeccccC---CCCCCCCCCceeEEeccc
Q 011733 90 DSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKF---PLPYRAKSFSLVIVSDAV 166 (478)
Q Consensus 90 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~r~~sfs~~~vsd~~ 166 (478)
+.=.+||-||+.+...+..| ++...+..|++|.+-.-. + ..+....| -.+....+|.+|+..+.+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIE---------K--RNVVFDNFDAQDPPFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHH---------H--TTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred CCCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHh---------h--hhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence 55679999999999655555 677778888888752211 1 11222222 344567899999999999
Q ss_pred hhchHHHHHHHHHHHHhcccCC-cEEE
Q 011733 167 DYLSPKYLNRTLPELARVSVDG-VVIF 192 (478)
Q Consensus 167 Dyl~~~YLn~~L~ai~r~~~DG-v~V~ 192 (478)
.|+. -..++|..|.++...| .-++
T Consensus 89 ~~~~--d~~~~l~~l~~~LkpgG~l~~ 113 (161)
T PF13489_consen 89 EHLP--DPEEFLKELSRLLKPGGYLVI 113 (161)
T ss_dssp GGSS--HHHHHHHHHHHCEEEEEEEEE
T ss_pred hhcc--cHHHHHHHHHHhcCCCCEEEE
Confidence 9984 3777888887777654 4444
No 46
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=71.40 E-value=24 Score=34.16 Aligned_cols=114 Identities=15% Similarity=0.203 Sum_probs=69.4
Q ss_pred hHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhc---cccccccCCCccccccchhhhhhhhhh-c-----ceeec
Q 011733 74 TLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLK---EEDTEAWGVEPYDLDDADANCRSLVRK-G-----IVRVA 144 (478)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~---~~~~~~~g~~p~~~~~~~~~~~~~~~~-g-----~~~~~ 144 (478)
-.++...|=-|++.+...-.+||.+|-.+=.....|++ ..+.+..||++.+ +.-..|+..+++ + -+...
T Consensus 36 y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~ 113 (239)
T TIGR00740 36 YSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCN 113 (239)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEEC
Confidence 33444445456666766667899999887666555554 3467788888753 233334433332 1 23455
Q ss_pred cccCCCCCCCCCCceeEEeccchhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 145 DIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 145 d~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
|+. .+| .++++.++.+..+.++...-..+.|+.+.++...|-.+.
T Consensus 114 d~~-~~~--~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~ 158 (239)
T TIGR00740 114 DIR-HVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLV 158 (239)
T ss_pred Chh-hCC--CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 663 233 246888887788777765555677777777777654444
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=69.82 E-value=5.4 Score=32.84 Aligned_cols=92 Identities=24% Similarity=0.287 Sum_probs=48.7
Q ss_pred eEeCCchhHHHhhhhcc-ccccccCCCccc--cccchhhhhhhhhhcc--eeeccccCCCCCCCCCCceeEEeccchhch
Q 011733 96 LHVGPETCSVVSKLLKE-EDTEAWGVEPYD--LDDADANCRSLVRKGI--VRVADIKFPLPYRAKSFSLVIVSDAVDYLS 170 (478)
Q Consensus 96 l~~~p~~~~~~~~~~~~-~~~~~~g~~p~~--~~~~~~~~~~~~~~g~--~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~ 170 (478)
|-||+.|......|+++ ...+-.|+++.. |+.+...-+....... +++.+.....+.-..+|.+|+.+..+.++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 67899999888888876 567777877653 4444444444433332 33333333222233799999999999998
Q ss_pred HHHHHHHHHHHHhcccCCc
Q 011733 171 PKYLNRTLPELARVSVDGV 189 (478)
Q Consensus 171 ~~YLn~~L~ai~r~~~DGv 189 (478)
..+.++|..+.++...|-
T Consensus 80 -~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-
T ss_pred -hhHHHHHHHHHHHcCCCC
Confidence 677788888877777663
No 48
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=68.69 E-value=15 Score=30.69 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=53.7
Q ss_pred ccceeEeCCchhHHHhhhhcc-ccccccCCCccc--cccchhhhhhhh-hhcceeeccccCCCCCCCCCCceeEEeccch
Q 011733 92 MLKVLHVGPETCSVVSKLLKE-EDTEAWGVEPYD--LDDADANCRSLV-RKGIVRVADIKFPLPYRAKSFSLVIVSDAVD 167 (478)
Q Consensus 92 ~~~~l~~~p~~~~~~~~~~~~-~~~~~~g~~p~~--~~~~~~~~~~~~-~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~D 167 (478)
-.+||-+|..+=.....+++. .+.+.+|+|+-+ ++.+..+++.+- .+=-+...|+...++.-.++|..+++.....
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 358999999885555556654 247888988743 222333333331 1111223454433555456899998865433
Q ss_pred hchHHHHHHHHHHHHhcccCCcEEEecc
Q 011733 168 YLSPKYLNRTLPELARVSVDGVVIFAGY 195 (478)
Q Consensus 168 yl~~~YLn~~L~ai~r~~~DGv~V~~GY 195 (478)
- ....+++..+.+ ..+|.-+..+|
T Consensus 100 ~-~~~~l~~~~~~L---k~gG~li~~~~ 123 (124)
T TIGR02469 100 L-LQEILEAIWRRL---RPGGRIVLNAI 123 (124)
T ss_pred h-HHHHHHHHHHHc---CCCCEEEEEec
Confidence 2 244555555544 34555554333
No 49
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=66.22 E-value=21 Score=33.84 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=67.3
Q ss_pred cchHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhh-cc----eeeccc
Q 011733 72 SCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI----VRVADI 146 (478)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~----~~~~d~ 146 (478)
+-+.++++.++.++ -.+||-+|=.+......|.+ ...+..||++.+ ++-..++.++++ |+ +.++|+
T Consensus 17 ~~~~~l~~~l~~~~------~~~vLDiGcG~G~~a~~La~-~g~~V~gvD~S~--~~i~~a~~~~~~~~~~~v~~~~~d~ 87 (197)
T PRK11207 17 RTHSEVLEAVKVVK------PGKTLDLGCGNGRNSLYLAA-NGFDVTAWDKNP--MSIANLERIKAAENLDNLHTAVVDL 87 (197)
T ss_pred CChHHHHHhcccCC------CCcEEEECCCCCHHHHHHHH-CCCEEEEEeCCH--HHHHHHHHHHHHcCCCcceEEecCh
Confidence 44566777776542 26899999888776655654 455677776542 233345554443 22 345676
Q ss_pred cCCCCCCCCCCceeEEeccchhchHHHHHHHHHHHHhcccCCcE
Q 011733 147 KFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVV 190 (478)
Q Consensus 147 ~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~ 190 (478)
. .+|. ..+|.+|+.+....++.+.-+.+.+..+.++...|-.
T Consensus 88 ~-~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 88 N-NLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred h-hCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 4 2333 3679999988777666555566667777666676655
No 50
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=63.68 E-value=4.6 Score=41.62 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=60.0
Q ss_pred ccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcce--EeeccCCCCcccccccCCCccce--eeecCCcccCCchHH
Q 011733 336 SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH--VTLHHSDLPQALEDEYGGWINRM--IVVANPLVYGDYPKI 411 (478)
Q Consensus 336 SIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~--VTL~H~dlP~wL~d~yGGW~n~~--iv~~~P~~fgdYp~~ 411 (478)
.+.|..++|. .|.+| .+--+++++-+.++||++- .-+.|--+|.|+... .-+...+ ... -..-+|-+.
T Consensus 43 ~~Kw~~~e~~-~g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~---~~l~~~I~~ 114 (320)
T PF00331_consen 43 EMKWGSIEPE-PGRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELR---ARLENHIKT 114 (320)
T ss_dssp TTSHHHHESB-TTBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHH---HHHHHHHHH
T ss_pred ccchhhhcCC-CCccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHH---HHHHHHHHH
Confidence 3679999998 68888 5668899999999999985 455688899999753 1122111 110 023467777
Q ss_pred hhhhhC--CCCCccchhhhhhhcc
Q 011733 412 MKQNAG--SRLPAFTDHESQQIKG 433 (478)
Q Consensus 412 m~~~~G--dRLP~FT~eE~~~lkG 433 (478)
|.++++ .++..|---|+..-.+
T Consensus 115 v~~~y~~~g~i~~WDVvNE~i~~~ 138 (320)
T PF00331_consen 115 VVTRYKDKGRIYAWDVVNEAIDDD 138 (320)
T ss_dssp HHHHTTTTTTESEEEEEES-B-TT
T ss_pred HHhHhccccceEEEEEeeecccCC
Confidence 888888 4899998877765544
No 51
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=62.45 E-value=24 Score=34.57 Aligned_cols=118 Identities=13% Similarity=0.198 Sum_probs=70.9
Q ss_pred cccchHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhc---cccccccCCCccccccchhhhhhhhhh-cc---e-
Q 011733 70 VVSCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLK---EEDTEAWGVEPYDLDDADANCRSLVRK-GI---V- 141 (478)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~---~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~---~- 141 (478)
..-|-.++++.+-.+-+.+-..-.+||.||-.|-.....|++ ....+..||+|.. +.-..|+..+++ |. |
T Consensus 35 ~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~ 112 (247)
T PRK15451 35 SVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVD 112 (247)
T ss_pred cCCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeE
Confidence 345556666666555544433446799999988776665654 3567888888743 122233333321 21 2
Q ss_pred -eeccccCCCCCCCCCCceeEEeccchhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 142 -RVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 142 -~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
..+|+. .+|. ++|+.++....+.++......++++.|.++...|-.+.
T Consensus 113 ~~~~d~~-~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~ 161 (247)
T PRK15451 113 VIEGDIR-DIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALV 161 (247)
T ss_pred EEeCChh-hCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 334542 2333 45888777777777766666678888888877765555
No 52
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=61.97 E-value=18 Score=35.06 Aligned_cols=122 Identities=21% Similarity=0.208 Sum_probs=66.3
Q ss_pred hhcccCcccchHhhHhhhh-HHHHHhcc-cccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcce
Q 011733 64 LSKVEGVVSCTLEVQRALP-VLKKAYGD-SMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIV 141 (478)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~ 141 (478)
+++....+.-.+++|+.+- .|.+.... .-.+||.+|-.|..+.. .|.+...+..|+++.. +.-..|+.....--+
T Consensus 13 F~~aa~~Y~~~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~-~l~~~~~~v~~~D~s~--~~l~~a~~~~~~~~~ 89 (251)
T PRK10258 13 FGRAAAHYEQHAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSR-YWRERGSQVTALDLSP--PMLAQARQKDAADHY 89 (251)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHH-HHHHcCCeEEEEECCH--HHHHHHHhhCCCCCE
Confidence 4444433333445554332 12233332 34679999999976544 4444456677776532 111222222211134
Q ss_pred eeccccCCCCCCCCCCceeEEeccchhchHHHHHHHHHHHHhcccCCcEE
Q 011733 142 RVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVI 191 (478)
Q Consensus 142 ~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V 191 (478)
.++|+.- +|+...+|.+|+....+.+. .-+.++|.++.++...|-.+
T Consensus 90 ~~~d~~~-~~~~~~~fD~V~s~~~l~~~--~d~~~~l~~~~~~Lk~gG~l 136 (251)
T PRK10258 90 LAGDIES-LPLATATFDLAWSNLAVQWC--GNLSTALRELYRVVRPGGVV 136 (251)
T ss_pred EEcCccc-CcCCCCcEEEEEECchhhhc--CCHHHHHHHHHHHcCCCeEE
Confidence 5678743 67778899999876655442 22456677777776765333
No 53
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=61.85 E-value=17 Score=34.60 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=61.6
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccc--cccchhhhhhhhhhcc-----eeeccccCCCCCCCCCCceeEEecc
Q 011733 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGI-----VRVADIKFPLPYRAKSFSLVIVSDA 165 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~--~~~~~~~~~~~~~~g~-----~~~~d~~~~~~~r~~sfs~~~vsd~ 165 (478)
.+||-+|-.+-.+...|.+. ..+..|||+-+ ++.+. +.+-..+. ..++|+... | ++|..++.++.
T Consensus 57 ~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~---~~~~~~~~~~~i~~~~~d~~~~-~---~~fD~ii~~~~ 128 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMAR---NRAQGRDVAGNVEFEVNDLLSL-C---GEFDIVVCMDV 128 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHH---HHHHhcCCCCceEEEECChhhC-C---CCcCEEEEhhH
Confidence 57999999998887777754 45778887532 22222 22222332 456777653 4 89999999888
Q ss_pred chhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 166 VDYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 166 ~Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
+.++.+.-+.+++..+.++...|+.+.
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 877756667888888877766665444
No 54
>PLN03059 beta-galactosidase; Provisional
Probab=61.32 E-value=11 Score=44.22 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=60.6
Q ss_pred ccChHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceE------ee--ccCCCCccccc
Q 011733 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV------TL--HHSDLPQALED 387 (478)
Q Consensus 316 ~rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~V------TL--~H~dlP~wL~d 387 (478)
..|++=++.||++|+|+.-+=+-|.-.+|. +|.+|-+|..=..+.|+...+.|+-.++ +- ..-.+|.||.+
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 357778999999999999999999999999 7999999988889999999999976444 32 25568999975
Q ss_pred c
Q 011733 388 E 388 (478)
Q Consensus 388 ~ 388 (478)
.
T Consensus 138 ~ 138 (840)
T PLN03059 138 V 138 (840)
T ss_pred C
Confidence 3
No 55
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=60.26 E-value=28 Score=32.88 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=60.5
Q ss_pred hhhhHHHHHhc-ccccceeEeCCchhHHHhhhhccccccccCCCccc--cccchhhhhhhhhhcc-----eeeccccCCC
Q 011733 79 RALPVLKKAYG-DSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGI-----VRVADIKFPL 150 (478)
Q Consensus 79 ~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~--~~~~~~~~~~~~~~g~-----~~~~d~~~~~ 150 (478)
.++..|+. +| ..-.+||-||..+-.....|.+.. .+..|+++-. ++.+..+++ +.|+ ..++| +
T Consensus 51 ~~~~~l~~-~~~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~---~~~~~~~i~~~~~d----~ 121 (230)
T PRK07580 51 TVLSWLPA-DGDLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAP---EAGLAGNITFEVGD----L 121 (230)
T ss_pred HHHHHHHh-cCCCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHH---hcCCccCcEEEEcC----c
Confidence 34444543 22 234689999999988777776543 4456655421 122222222 1222 33455 3
Q ss_pred CCCCCCCceeEEeccchhchHHHHHHHHHHHHhcccCCc
Q 011733 151 PYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGV 189 (478)
Q Consensus 151 ~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv 189 (478)
+.-..+|.+++..+.+.+....-+.+++..+.+....|+
T Consensus 122 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 122 ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 344688999999888877656677888888876654444
No 56
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=59.82 E-value=17 Score=34.32 Aligned_cols=62 Identities=18% Similarity=0.398 Sum_probs=44.7
Q ss_pred ccChHHHHHHHHcCCCeeeeccccceee-----cCC--CCCCChhHHHHHHHHHHHHHHCCCcceEeeccC
Q 011733 316 HKYKEDVKLMAKTGLDAYRFSISWSRLI-----PNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHS 379 (478)
Q Consensus 316 ~rykeDi~Lmk~lGvnayRFSIsWsRI~-----P~G--~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~ 379 (478)
.+|+++++.|+++|++..=+ .|+..- |.. .+.......+....++++.-+.||+.+|.|+..
T Consensus 20 ~~W~~~~~~m~~~GidtlIl--q~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLIL--QWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEE--EEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 46999999999999998632 244432 221 012233456788999999999999999999965
No 57
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=59.70 E-value=9.9 Score=41.34 Aligned_cols=59 Identities=22% Similarity=0.512 Sum_probs=36.7
Q ss_pred cChHHHHHHH-HcCCCeeeec--c--ccceeec-CCCC--CCChhHHHHHHHHHHHHHHCCCcceEeecc
Q 011733 317 KYKEDVKLMA-KTGLDAYRFS--I--SWSRLIP-NGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHH 378 (478)
Q Consensus 317 rykeDi~Lmk-~lGvnayRFS--I--sWsRI~P-~G~G--~vN~egv~~Y~~lId~L~~~GIeP~VTL~H 378 (478)
.+++.+..++ ++|+...||- + +..-..+ ++.| .+| +.+-++++|.|+++||+|+|.|-.
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f 106 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF 106 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe
Confidence 3666666665 9999999974 2 3332333 2222 256 788999999999999999999864
No 58
>PRK05785 hypothetical protein; Provisional
Probab=58.87 E-value=36 Score=33.18 Aligned_cols=90 Identities=22% Similarity=0.196 Sum_probs=58.8
Q ss_pred ccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcceeeccccCCCCCCCCCCceeEEeccchhchH
Q 011733 92 MLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYLSP 171 (478)
Q Consensus 92 ~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~ 171 (478)
-.+||-||-.|..+...|.+.-+.+..||++-. +.=..++ +|.-..++|.. .||+...||..++.+..+.+. .
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~---~~~~~~~~d~~-~lp~~d~sfD~v~~~~~l~~~-~ 124 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNL---VADDKVVGSFE-ALPFRDKSFDVVMSSFALHAS-D 124 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHH---hccceEEechh-hCCCCCCCEEEEEecChhhcc-C
Confidence 468999999999776655544346788887632 0000111 12223345654 579999999999999876543 2
Q ss_pred HHHHHHHHHHHhcccCCc
Q 011733 172 KYLNRTLPELARVSVDGV 189 (478)
Q Consensus 172 ~YLn~~L~ai~r~~~DGv 189 (478)
=+.+.|.++.|+....+
T Consensus 125 -d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 -NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CHHHHHHHHHHHhcCce
Confidence 25678888888887643
No 59
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=57.30 E-value=5.9 Score=39.78 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=19.7
Q ss_pred ccccChHHHHHHHHcCCCeeeecc
Q 011733 314 EYHKYKEDVKLMAKTGLDAYRFSI 337 (478)
Q Consensus 314 ~Y~rykeDi~Lmk~lGvnayRFSI 337 (478)
....++.|+++||++|+|+.|++.
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h 57 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH 57 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT
T ss_pred CHHHHHHHHHHHHhcCcceEEccc
Confidence 356789999999999999999864
No 60
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=56.95 E-value=22 Score=36.19 Aligned_cols=60 Identities=13% Similarity=0.314 Sum_probs=39.0
Q ss_pred hHHHHHHHHcCCCeeeecc--cccee--------ec--CCC------CCCChhHHHHHHHHHHHHHHCCCcceEeecc
Q 011733 319 KEDVKLMAKTGLDAYRFSI--SWSRL--------IP--NGR------GPVNPKGLQYYNNLINELISYGIQPHVTLHH 378 (478)
Q Consensus 319 keDi~Lmk~lGvnayRFSI--sWsRI--------~P--~G~------G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H 378 (478)
++=++..++-|+|..|+.+ .|-.. .| ..+ ..+|++-+++.+++|+.|.++||+|.+.+.|
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w 110 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW 110 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 3347788899999999998 55544 11 111 1389999999999999999999999887777
No 61
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=53.69 E-value=26 Score=26.85 Aligned_cols=94 Identities=21% Similarity=0.223 Sum_probs=51.2
Q ss_pred ceeEeCCchhHHHhhhhccccccccCCCccccccchhhhh-----hhhhhcceeeccccCCCCCCCCCCceeEEeccchh
Q 011733 94 KVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCR-----SLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (478)
Q Consensus 94 ~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~-----~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (478)
++|++|..+-.....+++....+.+|+|+-+. +-..++ ....+--+...|+.-+.+....+|.+++......+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPV--ALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 47889988877777777645566677664321 111111 11122233445665554445678888888766544
Q ss_pred ---chHHHHHHHHHHHHhcccCCcEEE
Q 011733 169 ---LSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 169 ---l~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
....+++.....+ ...|..+.
T Consensus 79 ~~~~~~~~l~~~~~~l---~~~g~~~~ 102 (107)
T cd02440 79 LVEDLARFLEEARRLL---KPGGVLVL 102 (107)
T ss_pred hhhHHHHHHHHHHHHc---CCCCEEEE
Confidence 3344454444444 44555444
No 62
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=52.19 E-value=34 Score=36.07 Aligned_cols=70 Identities=23% Similarity=0.442 Sum_probs=43.0
Q ss_pred hHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCC---CCcccccccCCCccc
Q 011733 319 KEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSD---LPQALEDEYGGWINR 395 (478)
Q Consensus 319 keDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~d---lP~wL~d~yGGW~n~ 395 (478)
++=+++||+.|+|+.|+-+ | +-|...|..| ++.=.++..+.+++|++.++++|--| =|.- |.....|.+.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~-Q~~P~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGK-QNKPAAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB--B--TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCC-CCCCccCCCC
Confidence 3347999999999999977 4 3455224444 67777888899999999999998544 2322 2223578774
No 63
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=51.83 E-value=39 Score=33.62 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=73.7
Q ss_pred hhcccCcccchHhhHhhhhHHHHHhcc------------------------cccceeEeCCchhHHHhhhhcc--ccccc
Q 011733 64 LSKVEGVVSCTLEVQRALPVLKKAYGD------------------------SMLKVLHVGPETCSVVSKLLKE--EDTEA 117 (478)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~l~~~p~~~~~~~~~~~~--~~~~~ 117 (478)
-||-.+-++|+.+|++.-.-.-+.|-. .-.+||-||=.|-.....|.+. ...+.
T Consensus 22 ~~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V 101 (261)
T PLN02233 22 RSRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKV 101 (261)
T ss_pred hhhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEE
Confidence 345556778888888766555555531 1236888888887754444332 23578
Q ss_pred cCCCccc--cccchhhhhhhhhh---c-ceeeccccCCCCCCCCCCceeEEeccchhchHHHHHHHHHHHHhcccCCcEE
Q 011733 118 WGVEPYD--LDDADANCRSLVRK---G-IVRVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVI 191 (478)
Q Consensus 118 ~g~~p~~--~~~~~~~~~~~~~~---g-~~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V 191 (478)
.|||+.+ ++-+..+.+..-+. . -+..+|+. .||+...||..|+.+..+-+.. -..+.|.++.|+...|-.+
T Consensus 102 ~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~-~lp~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l 178 (261)
T PLN02233 102 MGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT-DLPFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRV 178 (261)
T ss_pred EEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc-cCCCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEE
Confidence 8888753 12121111000001 1 13456653 5788888999999987755542 2456777888887877554
Q ss_pred E
Q 011733 192 F 192 (478)
Q Consensus 192 ~ 192 (478)
.
T Consensus 179 ~ 179 (261)
T PLN02233 179 S 179 (261)
T ss_pred E
Confidence 4
No 64
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=50.18 E-value=37 Score=33.30 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=59.7
Q ss_pred cccccceeEeCCchhHHHhhhhccccccccCCCccc--cccchhhhhhhhhhcc-----eeeccccCCCCCCCCCCceeE
Q 011733 89 GDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGI-----VRVADIKFPLPYRAKSFSLVI 161 (478)
Q Consensus 89 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~--~~~~~~~~~~~~~~g~-----~~~~d~~~~~~~r~~sfs~~~ 161 (478)
+..-.+||-+|-.+......|.+. ..+..|||+.. ++-+..+|+ +.|+ +..+|+.--.|.-..+|.+|+
T Consensus 42 ~~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~---~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 42 PPRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAE---AKGVSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHH---hcCCccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 344468999999999877777654 57888887753 222333332 2342 344565432234457999999
Q ss_pred EeccchhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 162 VSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 162 vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
....+.|+... .++|..+.++...|-.+.
T Consensus 118 ~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 118 FHAVLEWVADP--KSVLQTLWSVLRPGGALS 146 (255)
T ss_pred ehhHHHhhCCH--HHHHHHHHHHcCCCeEEE
Confidence 88777766221 245556666666665554
No 65
>PLN02244 tocopherol O-methyltransferase
Probab=48.20 E-value=39 Score=34.99 Aligned_cols=97 Identities=22% Similarity=0.312 Sum_probs=60.6
Q ss_pred cccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhh-cc-----eeeccccCCCCCCCCCCceeEEec
Q 011733 91 SMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI-----VRVADIKFPLPYRAKSFSLVIVSD 164 (478)
Q Consensus 91 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~-----~~~~d~~~~~~~r~~sfs~~~vsd 164 (478)
.-.+||-||=.+-.....|.+.-+.+.-||++.+- .-..++.+.++ |+ +.++|+ ..+|+...+|.+|+...
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~--~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPV--QAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECC
Confidence 34679999999888776666554556777765331 12234444332 32 456776 45788889999999887
Q ss_pred cchhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 165 AVDYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 165 ~~Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
...++.. ..+.+.++.|+...|-.+.
T Consensus 195 ~~~h~~d--~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 195 SGEHMPD--KRKFVQELARVAAPGGRII 220 (340)
T ss_pred chhccCC--HHHHHHHHHHHcCCCcEEE
Confidence 7666521 2355566666666654444
No 66
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=47.43 E-value=25 Score=29.14 Aligned_cols=98 Identities=23% Similarity=0.224 Sum_probs=60.5
Q ss_pred cceeEeCCchhHHHhhhhc-cccccccCCCccc--cccchhhhh--hhhhhcceeeccccCCCCCCCCCCceeEEec-cc
Q 011733 93 LKVLHVGPETCSVVSKLLK-EEDTEAWGVEPYD--LDDADANCR--SLVRKGIVRVADIKFPLPYRAKSFSLVIVSD-AV 166 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~-~~~~~~~g~~p~~--~~~~~~~~~--~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd-~~ 166 (478)
.+||.+|-.+=...-.|++ ....+..|||+.+ ++-+..+.+ .+-.+=-+..+|+ ...+--...|..++... ..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCcc
Confidence 4799999999888888887 4778889998743 223333331 1122223566888 44444555599999988 55
Q ss_pred hhchH-HHHHHHHHHHHhcccCCcEE
Q 011733 167 DYLSP-KYLNRTLPELARVSVDGVVI 191 (478)
Q Consensus 167 Dyl~~-~YLn~~L~ai~r~~~DGv~V 191 (478)
+.+.. ....++|..+.+....|-.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~l 107 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRL 107 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEE
Confidence 53323 45555666665555555443
No 67
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=47.28 E-value=57 Score=30.46 Aligned_cols=95 Identities=26% Similarity=0.338 Sum_probs=52.3
Q ss_pred cceeEeCCchhHHHhhhhccc-cccccCCCccccccchhhhhhhhhh-cceeeccccCCCCCCCCCCceeEEeccchhch
Q 011733 93 LKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVRK-GIVRVADIKFPLPYRAKSFSLVIVSDAVDYLS 170 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~-~~~~~g~~p~~~~~~~~~~~~~~~~-g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~ 170 (478)
.+||.+|..+-.....|++.. .....|+++-. +.-..++..... -.+-++|+. .+|.-.++|.+++....+.+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWC- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhc-
Confidence 579999999988776666543 12235665531 111122222211 123456665 456566889999887665443
Q ss_pred HHHHHHHHHHHHhcccCC-cEEE
Q 011733 171 PKYLNRTLPELARVSVDG-VVIF 192 (478)
Q Consensus 171 ~~YLn~~L~ai~r~~~DG-v~V~ 192 (478)
. -..++|..+.++...| .-++
T Consensus 112 ~-~~~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 112 D-DLSQALSELARVLKPGGLLAF 133 (240)
T ss_pred c-CHHHHHHHHHHHcCCCcEEEE
Confidence 1 1345566665555554 4444
No 68
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=46.37 E-value=38 Score=36.31 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=63.9
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhh---hhhcceeecccc-CCCCCCCCCCceeEEeccchh
Q 011733 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSL---VRKGIVRVADIK-FPLPYRAKSFSLVIVSDAVDY 168 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~---~~~g~~~~~d~~-~~~~~r~~sfs~~~vsd~~Dy 168 (478)
.+||-+|..+..+...|.+. ..+..|||+..- .=..++.+ ..+--+..+|+. ..+|.-..+|.+++....+.+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~--~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK-AGQVIALDFIES--VIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHH--HHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 47999999999888777765 457788876431 11111211 111124446663 345555789999999888888
Q ss_pred chHHHHHHHHHHHHhcccCCcEEE
Q 011733 169 LSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 169 l~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
+...-+.+.|..+.|+...|-.+.
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~ 139 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIF 139 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEE
Confidence 866667788888888777665554
No 69
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=45.69 E-value=31 Score=32.83 Aligned_cols=97 Identities=19% Similarity=0.236 Sum_probs=57.4
Q ss_pred cceeEeCCchhHHHhhhhcc--ccccccCCCccc--cccchhhhhhhhhhc-ceeeccccCCCCCCCCCCceeEEeccch
Q 011733 93 LKVLHVGPETCSVVSKLLKE--EDTEAWGVEPYD--LDDADANCRSLVRKG-IVRVADIKFPLPYRAKSFSLVIVSDAVD 167 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~--~~~~~~g~~p~~--~~~~~~~~~~~~~~g-~~~~~d~~~~~~~r~~sfs~~~vsd~~D 167 (478)
.+||-+|-.+......|.+. ...+..|||+.+ ++-+..+++..--.. -+..+|+. .+|+...+|..|+.+..+.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM-ELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh-cCCCCCCCccEEEEecccc
Confidence 58999999999977766654 345788888642 222333333211111 12335552 3566678999998876655
Q ss_pred hchHHHHHHHHHHHHhcccCCcEEE
Q 011733 168 YLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 168 yl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
++ +++ .+.|.++.++...|-.+.
T Consensus 126 ~~-~~~-~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 126 NV-PDY-MQVLREMYRVVKPGGKVV 148 (231)
T ss_pred cC-CCH-HHHHHHHHHHcCcCeEEE
Confidence 53 222 356666666666664443
No 70
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=44.80 E-value=44 Score=30.53 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCCeeeeccc--cce-eecCCCC--CCChhHHHHHHHHHHHHHHCCCcceEeecc-CC------CCcccc
Q 011733 320 EDVKLMAKTGLDAYRFSIS--WSR-LIPNGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHH-SD------LPQALE 386 (478)
Q Consensus 320 eDi~Lmk~lGvnayRFSIs--WsR-I~P~G~G--~vN~egv~~Y~~lId~L~~~GIeP~VTL~H-~d------lP~wL~ 386 (478)
+=++.+|++|+|+.-+... +-- ..|+..+ ....+ -+...++|+.+.++||+.++=+-+ || .|.|+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~ 81 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFV 81 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceee
Confidence 3368899999999988332 211 1344222 22333 589999999999999998875542 44 466665
No 71
>PRK08317 hypothetical protein; Provisional
Probab=44.25 E-value=39 Score=31.43 Aligned_cols=97 Identities=24% Similarity=0.259 Sum_probs=53.4
Q ss_pred cceeEeCCchhHHHhhhhcc--ccccccCCCccc--cccchhhhhhhhhhcceeeccccCCCCCCCCCCceeEEeccchh
Q 011733 93 LKVLHVGPETCSVVSKLLKE--EDTEAWGVEPYD--LDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~--~~~~~~g~~p~~--~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (478)
.+||.+|..+-.....+.+. ...+..|+++-. ++.+..+......+--+..+|+. .+|+...+|.+++....+.+
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechhhc
Confidence 47999999886655555433 234677777642 12222221111222234556763 35677789999998877665
Q ss_pred chHHHHHHHHHHHHhcccCCcEEE
Q 011733 169 LSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 169 l~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
... ..+.++.+.++...|-.+.
T Consensus 100 ~~~--~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 100 LED--PARALAEIARVLRPGGRVV 121 (241)
T ss_pred cCC--HHHHHHHHHHHhcCCcEEE
Confidence 421 2334444544455554444
No 72
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=42.13 E-value=57 Score=32.45 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=38.0
Q ss_pred hHHHHHHHHcCCCeeeeccccc-eeecCCCCCCChhHHHHHHHHHHHHHHCCCcceE
Q 011733 319 KEDVKLMAKTGLDAYRFSISWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 374 (478)
Q Consensus 319 keDi~Lmk~lGvnayRFSIsWs-RI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~V 374 (478)
+|.++.|+++|++.+-++++-+ .+++.-.+. ...+-+.+.++.+.++||+..+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~---~s~~~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIIST---HTYDDRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCC---CCHHHHHHHHHHHHHcCCEEEE
Confidence 7899999999999999999821 123321121 2356777889999999998543
No 73
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=42.02 E-value=47 Score=33.38 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=62.9
Q ss_pred chHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhh-cc---eeeccccC
Q 011733 73 CTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI---VRVADIKF 148 (478)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~---~~~~d~~~ 148 (478)
-..++..+++.++. .+||.+|=.+.....-|.+. ..+..||+.-. .+-..++...++ |+ +.+.|+.-
T Consensus 108 ~~~~~~~~~~~~~~------~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~--~ai~~~~~~~~~~~l~v~~~~~D~~~ 178 (287)
T PRK12335 108 THSEVLEAVQTVKP------GKALDLGCGQGRNSLYLALL-GFDVTAVDINQ--QSLENLQEIAEKENLNIRTGLYDINS 178 (287)
T ss_pred ccHHHHHHhhccCC------CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEechhc
Confidence 35566677665431 38999999999877777664 35566664421 122233333332 32 33456643
Q ss_pred CCCCCCCCCceeEEeccchhchHHHHHHHHHHHHhcccCCc
Q 011733 149 PLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGV 189 (478)
Q Consensus 149 ~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv 189 (478)
.-+ ..+|..++....+-++.+.-+.+.|..+.++...|-
T Consensus 179 ~~~--~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG 217 (287)
T PRK12335 179 ASI--QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGG 217 (287)
T ss_pred ccc--cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCc
Confidence 222 678999888877666655566666776666666553
No 74
>PRK10150 beta-D-glucuronidase; Provisional
Probab=41.89 E-value=16 Score=40.77 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=18.8
Q ss_pred ccChHHHHHHHHcCCCeeeec
Q 011733 316 HKYKEDVKLMAKTGLDAYRFS 336 (478)
Q Consensus 316 ~rykeDi~Lmk~lGvnayRFS 336 (478)
..+..|+++||++|+|+.|+|
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~s 333 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTS 333 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEec
Confidence 347889999999999999996
No 75
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=41.62 E-value=23 Score=30.61 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=25.5
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhcCCCCcchh
Q 011733 29 RSSPLLSVILLAVGAVLLIGYLYSGSGKTTIE 60 (478)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (478)
..+-|++|.+++|-.||||..+-++|++-.+.
T Consensus 23 ~pn~lMtILivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 23 NPNTLMTILIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34568888888888899999998888876653
No 76
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=40.96 E-value=48 Score=31.36 Aligned_cols=106 Identities=10% Similarity=0.112 Sum_probs=63.2
Q ss_pred hHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhh-cc---eeeccccCC
Q 011733 74 TLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI---VRVADIKFP 149 (478)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~---~~~~d~~~~ 149 (478)
..++.++++.++ -.+||-+|-.+.....-|.+. ..+..|+++.+ ++-..++...++ |+ +.++|+. .
T Consensus 19 ~~~l~~~~~~~~------~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~-~ 88 (195)
T TIGR00477 19 HSAVREAVKTVA------PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDIN-A 88 (195)
T ss_pred hHHHHHHhccCC------CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccch-h
Confidence 346777777654 248999999999877666653 44556655432 233333333322 32 3345664 2
Q ss_pred CCCCCCCCceeEEeccchhchHHHHHHHHHHHHhcccCCcE
Q 011733 150 LPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVV 190 (478)
Q Consensus 150 ~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~ 190 (478)
+|. .++|.+++.+...-++.+..+.+++.++.++...|-.
T Consensus 89 ~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 89 AAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred ccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcE
Confidence 233 3689999888766665555566666666666666644
No 77
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=40.02 E-value=42 Score=34.92 Aligned_cols=96 Identities=18% Similarity=0.096 Sum_probs=59.4
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccccccch-hhhhhhh-hhccee--eccccCCCCCCCCCCceeEEeccchh
Q 011733 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDAD-ANCRSLV-RKGIVR--VADIKFPLPYRAKSFSLVIVSDAVDY 168 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~-~~~~~~~-~~g~~~--~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (478)
++||-||=.+-.....++++......||+|...--.. ..++.+. ..+.+. ..|+. -||.. .+|..|+....+-+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCCC-CCcCEEEEcchhhc
Confidence 5899999999988888888766678999997732110 1122221 122222 22332 12332 48999888766655
Q ss_pred chHHHHHHHHHHHHhcccCCcEEE
Q 011733 169 LSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 169 l~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
. ....++|.++.++...|-.+.
T Consensus 201 ~--~dp~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 201 R--KSPLEHLKQLKHQLVIKGELV 222 (314)
T ss_pred c--CCHHHHHHHHHHhcCCCCEEE
Confidence 3 344577888888888775555
No 78
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=39.57 E-value=65 Score=36.97 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=55.9
Q ss_pred ccChHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCC------cceEee--ccCCCCccccc
Q 011733 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGI------QPHVTL--HHSDLPQALED 387 (478)
Q Consensus 316 ~rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GI------eP~VTL--~H~dlP~wL~d 387 (478)
..|++=|+.+|++|+|+...=+-|.-.+|. .|+.|-+|.-=.-+.|....++|+ =|+|+- .|-.+|.||..
T Consensus 49 e~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 49 EMWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 358888999999999999999999999999 677777775555555666667774 366663 47789988876
Q ss_pred c
Q 011733 388 E 388 (478)
Q Consensus 388 ~ 388 (478)
.
T Consensus 128 ~ 128 (649)
T KOG0496|consen 128 V 128 (649)
T ss_pred C
Confidence 4
No 79
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=38.42 E-value=18 Score=42.35 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.8
Q ss_pred cccccccChHHHHHHHHcCCCeeeec
Q 011733 311 ACDEYHKYKEDVKLMAKTGLDAYRFS 336 (478)
Q Consensus 311 A~D~Y~rykeDi~Lmk~lGvnayRFS 336 (478)
.+..+..+..|+++||++|+|++|.|
T Consensus 316 ~~~~~~~~~~dl~lmk~~n~N~vRts 341 (808)
T COG3250 316 RVTDEDAMERDLKLMKEANMNSVRTS 341 (808)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEec
Confidence 45566779999999999999999998
No 80
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=34.98 E-value=38 Score=28.03 Aligned_cols=90 Identities=26% Similarity=0.324 Sum_probs=57.3
Q ss_pred eeEeCCchhHHHhhhhccc----cccccCCCccccccchhhhhhhhh-hc---ceeeccccCCCCCCCCCCceeEEecc-
Q 011733 95 VLHVGPETCSVVSKLLKEE----DTEAWGVEPYDLDDADANCRSLVR-KG---IVRVADIKFPLPYRAKSFSLVIVSDA- 165 (478)
Q Consensus 95 ~l~~~p~~~~~~~~~~~~~----~~~~~g~~p~~~~~~~~~~~~~~~-~g---~~~~~d~~~~~~~r~~sfs~~~vsd~- 165 (478)
||-+|..+-.+...|++-- +...+||+.-. +.=..|+...+ +| -..++|+.. ||+...+|.+|+.+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~--~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP--EMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H--HHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH--HHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEEEEcCCc
Confidence 4667777766666665431 25566654321 12233444443 22 356788865 8888889999999755
Q ss_pred chhchHHHHHHHHHHHHhcccC
Q 011733 166 VDYLSPKYLNRTLPELARVSVD 187 (478)
Q Consensus 166 ~Dyl~~~YLn~~L~ai~r~~~D 187 (478)
++|+.+.-+.+.+..++++...
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999998776654
No 81
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.41 E-value=1.3e+02 Score=27.82 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=67.3
Q ss_pred hHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhcceeeccccCCCC-CCCC
Q 011733 77 VQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLP-YRAK 155 (478)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~~~~-~r~~ 155 (478)
-+.||-.+|+++|-...+.++.|= ...++ +|+ ..+.-.|+.==+--..|.++|..-.-+ =..+
T Consensus 12 ~~~Al~fY~~vFgae~~~~~~~~d------------~~~~~--~~~--~~~~i~HA~l~i~g~~im~sd~~~~~~~~~~~ 75 (136)
T COG2764 12 AREALAFYKEVFGAEELKRVPFGD------------MPSSA--GEP--PGGRIMHAELRIGGSTIMLSDAFPDMGATEGG 75 (136)
T ss_pred HHHHHHHHHHHhCceEEEEEEcCc------------cCccc--ccc--ccCceEEEEEEECCEEEEEecCCCccCcccCC
Confidence 368999999999999888887652 11111 111 122212221112233455666544333 1234
Q ss_pred CCceeEEeccchhchHHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccCC---cceeeeEEEecccC
Q 011733 156 SFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPA---KLRSSTWWIRYFLQ 227 (478)
Q Consensus 156 sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy---~~RfGl~~Vdf~~~ 227 (478)
..|+.|-.+..| +..+...+ .+.|+.|. |.-.+.| |+.-| +-|||..|- ++.+
T Consensus 76 ~~s~~l~~~~~d------~da~f~~a---~~aGa~v~--------mpl~~~f-wG~r~G~v~D~fGv~W~-l~~~ 131 (136)
T COG2764 76 GTSLSLDLYVED------VDAVFERA---AAAGATVV--------MPLEDTF-WGDRYGQVTDPFGVVWM-LNTP 131 (136)
T ss_pred CeeEEEEEEehH------HHHHHHHH---HhcCCeEE--------ecchhcC-cccceEEEECCCCCEEE-EecC
Confidence 566776665555 34444444 68898888 6654555 88877 678998887 5554
No 82
>smart00642 Aamy Alpha-amylase domain.
Probab=32.45 E-value=98 Score=29.00 Aligned_cols=67 Identities=13% Similarity=0.248 Sum_probs=43.9
Q ss_pred cccChHHHHHHHHcCCCeeeeccccceee---------cCCCCCCCh--hHHHHHHHHHHHHHHCCCcceEee--ccCCC
Q 011733 315 YHKYKEDVKLMAKTGLDAYRFSISWSRLI---------PNGRGPVNP--KGLQYYNNLINELISYGIQPHVTL--HHSDL 381 (478)
Q Consensus 315 Y~rykeDi~Lmk~lGvnayRFSIsWsRI~---------P~G~G~vN~--egv~~Y~~lId~L~~~GIeP~VTL--~H~dl 381 (478)
+....+-++-+++||+++.-++=-+.... |..--.+|+ -..+=++++|+++.++||++++-+ .|-.-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 44456677889999999987655433332 111012221 134668899999999999999865 47554
No 83
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=32.35 E-value=24 Score=42.24 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=21.1
Q ss_pred ccccChHHHHHHHHcCCCeeeecc
Q 011733 314 EYHKYKEDVKLMAKTGLDAYRFSI 337 (478)
Q Consensus 314 ~Y~rykeDi~Lmk~lGvnayRFSI 337 (478)
....+++|+++||++|+|+.|+|.
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~sH 376 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTAH 376 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC
Confidence 356789999999999999999974
No 84
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=32.21 E-value=1.2e+02 Score=29.48 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=55.3
Q ss_pred ccccceeEeCCchhHHHhhhhccc-cccccCCCccccccchhhhhhhhhhcceeeccccCCCCCCCCCCceeEEeccchh
Q 011733 90 DSMLKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (478)
Q Consensus 90 ~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~g~~p~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (478)
+.-.+||.||-.+......|.+.- ..+..||++.+ +.-..|+....+--+..+|+.-..| ..+|.+++.+..+.+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRLPDCQFVEADIASWQP--PQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhCCCCeEEECchhccCC--CCCccEEEEccChhh
Confidence 344689999999988766665442 46788888764 1111222222222355677753222 358999988877766
Q ss_pred chHHHHHHHHHHHHhcccCCcEE
Q 011733 169 LSPKYLNRTLPELARVSVDGVVI 191 (478)
Q Consensus 169 l~~~YLn~~L~ai~r~~~DGv~V 191 (478)
+ ++ ..+.|+.+.++...|-.+
T Consensus 106 ~-~d-~~~~l~~~~~~LkpgG~~ 126 (258)
T PRK01683 106 L-PD-HLELFPRLVSLLAPGGVL 126 (258)
T ss_pred C-CC-HHHHHHHHHHhcCCCcEE
Confidence 5 22 234555555555644333
No 85
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=31.18 E-value=26 Score=42.05 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred ccccChHHHHHHHHcCCCeeeecc
Q 011733 314 EYHKYKEDVKLMAKTGLDAYRFSI 337 (478)
Q Consensus 314 ~Y~rykeDi~Lmk~lGvnayRFSI 337 (478)
....+++||++||++|+|+.|+|.
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~sH 392 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCSH 392 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC
Confidence 456789999999999999999964
No 86
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=29.43 E-value=1.3e+02 Score=30.15 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=33.9
Q ss_pred CcccchHhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccch
Q 011733 69 GVVSCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDAD 129 (478)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ 129 (478)
.+.-+--|.+-.+|.+... .-++||.+|..+..+...+++.. +++-+++-|.|
T Consensus 53 ~~e~~y~e~l~~~~l~~~~---~p~~VL~iG~G~G~~~~~ll~~~-----~~~~v~~veid 105 (270)
T TIGR00417 53 RDEFIYHEMIAHVPLFTHP---NPKHVLVIGGGDGGVLREVLKHK-----SVEKATLVDID 105 (270)
T ss_pred chHHHHHHHhhhhHhhcCC---CCCEEEEEcCCchHHHHHHHhCC-----CcceEEEEeCC
Confidence 3444455666667766532 23499999999999888888754 23444444444
No 87
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=27.77 E-value=77 Score=33.40 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=33.7
Q ss_pred cChHHHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccC
Q 011733 317 KYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHS 379 (478)
Q Consensus 317 rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~ 379 (478)
..+.|+.+|++||+|+.|.= -|-|. .| .+..+..|-++||-.++.|...
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~----~n------Hd~CM~~~~~aGIYvi~Dl~~p 102 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPS----KN------HDECMSAFADAGIYVILDLNTP 102 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT----S--------HHHHHHHHHTT-EEEEES-BT
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCC----CC------HHHHHHHHHhCCCEEEEecCCC
Confidence 68999999999999999862 23343 22 3567788999999999988744
No 88
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=27.76 E-value=93 Score=32.21 Aligned_cols=96 Identities=21% Similarity=0.146 Sum_probs=59.0
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccccccch--hhhhhhhhh--cceeeccccCCCCCCCCCCceeEEeccchh
Q 011733 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDAD--ANCRSLVRK--GIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~--~~~~~~~~~--g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (478)
++||-||-.+-.....+++.......||+|....-.. ...+.+-.. --+...|+. .||+ ..+|..|+....+-+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCC-cCCcCEEEECChhhc
Confidence 6899999999888888887765569999987643221 111111001 113334543 4566 788999887666544
Q ss_pred chHHHHHHHHHHHHhcccCCcEEE
Q 011733 169 LSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 169 l~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
. . -..++|+.+.++...|-.+.
T Consensus 202 ~-~-dp~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 202 R-R-SPLDHLKQLKDQLVPGGELV 223 (322)
T ss_pred c-C-CHHHHHHHHHHhcCCCcEEE
Confidence 3 2 23456777777766665444
No 89
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=26.34 E-value=87 Score=29.62 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=47.9
Q ss_pred cceeEeCCchhHHHhhhhccc-cccccCCCccc--cccchhhhhhh--hhhcceeeccccCCCCCCCCCCceeEEeccch
Q 011733 93 LKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYD--LDDADANCRSL--VRKGIVRVADIKFPLPYRAKSFSLVIVSDAVD 167 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~-~~~~~g~~p~~--~~~~~~~~~~~--~~~g~~~~~d~~~~~~~r~~sfs~~~vsd~~D 167 (478)
++||.||..+......+.++- ..+..|+++-. ++.+..+|+.. -.+=-+...|+.- .|+ ..+|.+++....+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~~~-~~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-DPF-PDTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-CCC-CCCCCEeehHHHHH
Confidence 479999999888776666553 34566665521 12222222221 1111344567622 233 35798887654443
Q ss_pred hchHHHHHHHHHHHHhcccCC-cEEE
Q 011733 168 YLSPKYLNRTLPELARVSVDG-VVIF 192 (478)
Q Consensus 168 yl~~~YLn~~L~ai~r~~~DG-v~V~ 192 (478)
+. .+ ..+.|..+.++...| .-++
T Consensus 79 ~~-~~-~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 79 HI-KD-KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred hC-CC-HHHHHHHHHHHcCCCCEEEE
Confidence 32 11 234444444444544 4443
No 90
>COG0312 TldD Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]
Probab=26.28 E-value=22 Score=38.27 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=78.4
Q ss_pred hhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhhccee--eccc----cCCCCC--
Q 011733 81 LPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVR--VADI----KFPLPY-- 152 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~~--~~d~----~~~~~~-- 152 (478)
-++|+..+|+ .|+|+-|+|+-.=.-+ ..+|--|||=|=+-+.++.||++|+++ +.|. |..++-
T Consensus 260 s~~~~~~~G~------~v~se~lti~Ddp~~~---~~~gs~~fDdEGv~t~~~~lIe~GvL~~yl~~~~sA~~~G~~~TG 330 (454)
T COG0312 260 SSLLADKLGK------RVASELLTIIDDPTLP---GGLGSYPFDDEGVPTRRTVLIENGVLKGYLHDRYSARKLGLESTG 330 (454)
T ss_pred chHhhhhhhh------hhcCceeEEEeCCCCC---CCccCcccCCCCCccceeEEEEcCEEeehhcchhhHHHhCCCcCc
Confidence 3446666666 7899999987443322 369999999999999999999999986 4454 345665
Q ss_pred --CCCCCceeEEe-ccchhchHH--HHHHHHHHHHhcccCCcEEEeccccceecccccccccccCCcc--eeeeEEE
Q 011733 153 --RAKSFSLVIVS-DAVDYLSPK--YLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAKL--RSSTWWI 222 (478)
Q Consensus 153 --r~~sfs~~~vs-d~~Dyl~~~--YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy~~--RfGl~~V 222 (478)
|..|++.+... -+.-|+.+. =+.++|..+ .+|+-|. +...|+-... .|+.. +..-|||
T Consensus 331 nar~~~~~~~p~~rm~N~~i~~G~~s~eeli~~~----~~Giyv~-~~~gg~~~~~-------~~~f~~~~~~gy~I 395 (454)
T COG0312 331 NARRGSYAHVPIPRMTNTYIEPGDYSFEELIEDV----KRGLYVT-NLWGGQNDIT-------GGFFRFSGAEGYLI 395 (454)
T ss_pred ccccccCCcCCccceecccccCCCCCHHHHHHhh----CcEEEEe-cccCceeccC-------CceEEEEeeEEEEE
Confidence 44555433332 223333333 134566665 7899998 8777885554 23333 4556666
No 91
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=26.01 E-value=1.1e+02 Score=31.06 Aligned_cols=51 Identities=12% Similarity=0.406 Sum_probs=38.2
Q ss_pred ccChHHHHHHHHcCCCeee----------------------eccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcce
Q 011733 316 HKYKEDVKLMAKTGLDAYR----------------------FSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 373 (478)
Q Consensus 316 ~rykeDi~Lmk~lGvnayR----------------------FSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~ 373 (478)
-.-+.=|+++++||.++.. -.+ | ++|. |.++ ++.+..++..+++.|++-+
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT--GGId---l~Nf~~I~~i~ldaGv~kv 206 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT--GGID---LDNFEEIVQIALDAGVEKV 206 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC--CCcc---HHhHHHHHHHHHHcCCCee
Confidence 3456778999999999864 333 3 5776 4676 6788889999999998755
Q ss_pred E
Q 011733 374 V 374 (478)
Q Consensus 374 V 374 (478)
+
T Consensus 207 i 207 (236)
T TIGR03581 207 I 207 (236)
T ss_pred c
Confidence 3
No 92
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=25.95 E-value=55 Score=29.99 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=27.8
Q ss_pred CCccCCCCCCc-cccccccccCCCCCchhHHHHHHHHH-----hhhhhhhc
Q 011733 8 PARRLADGGSI-PFVGSAHSKSRSSPLLSVILLAVGAV-----LLIGYLYS 52 (478)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 52 (478)
.+|..-+.-.. -+.|-+...+.++|..-++++++|.+ +...|+|-
T Consensus 58 ~~R~l~~tNtt~~tGGELr~~pte~p~evvG~l~LGvV~GG~i~vLcylyl 108 (127)
T PF06040_consen 58 HSRSLSDTNTTTKTGGELRGPPTESPWEVVGYLILGVVAGGLIAVLCYLYL 108 (127)
T ss_pred hcccccccCCccccCceEeCCCCCCCeeeeehhhHHHHhccHHHHHHHHhc
Confidence 33443443333 45577888888899877777766544 45557663
No 93
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=25.88 E-value=98 Score=31.20 Aligned_cols=97 Identities=26% Similarity=0.263 Sum_probs=59.0
Q ss_pred ccceeEeCCchhHHHhhhhccc-cccccCCCccc--cccchhhhhhhhhhcce--eeccccCCCCCCCCCCceeEEeccc
Q 011733 92 MLKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYD--LDDADANCRSLVRKGIV--RVADIKFPLPYRAKSFSLVIVSDAV 166 (478)
Q Consensus 92 ~~~~l~~~p~~~~~~~~~~~~~-~~~~~g~~p~~--~~~~~~~~~~~~~~g~~--~~~d~~~~~~~r~~sfs~~~vsd~~ 166 (478)
=.+||-||=.|=-+--+|.|+- ..+.+|+++.+ ++-+-..|+.+=-++ | -++|. --||+.-.||..+.++..+
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA-e~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA-ENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEech-hhCCCCCCccCEEEeeehh
Confidence 3579999988866555554433 25666665432 222222222211111 1 13443 3599999999999999775
Q ss_pred hhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 167 DYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 167 Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
-.. ....+.|.++.||..-|..+.
T Consensus 130 rnv--~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 130 RNV--TDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred hcC--CCHHHHHHHHHHhhcCCeEEE
Confidence 544 145688999999988887444
No 94
>PRK10150 beta-D-glucuronidase; Provisional
Probab=25.44 E-value=1.2e+02 Score=33.98 Aligned_cols=66 Identities=8% Similarity=-0.092 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccCCc----ceeeeEEEecccCCccccchHHHHHHHHhhhc
Q 011733 171 PKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPAK----LRSSTWWIRYFLQNSLEENEVAAKKFDQASVK 246 (478)
Q Consensus 171 ~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy~----~RfGl~~Vdf~~~~~~RtpK~Sak~f~~ii~~ 246 (478)
..|+.+++..+ ++-=.|. |-+.|...| |....|.. ...|++-- -|+||+++..|+++-++
T Consensus 531 ~~~~~~~~~~~----~~~p~~~-G~~iW~~~D----~~~~~g~~~~~g~~~Gl~~~-------dr~~k~~~~~~k~~~~~ 594 (604)
T PRK10150 531 CAFLDMYHRVF----DRVPAVV-GEQVWNFAD----FATSQGILRVGGNKKGIFTR-------DRQPKSAAFLLKKRWTG 594 (604)
T ss_pred HHHHHHHHHHH----hcCCceE-EEEEEeeec----cCCCCCCcccCCCcceeEcC-------CCCChHHHHHHHHHhhc
Confidence 34566666555 3333555 999999999 43333321 35677422 28999999999998865
Q ss_pred cCCCCc
Q 011733 247 RSYKPA 252 (478)
Q Consensus 247 ~~fpp~ 252 (478)
..+..+
T Consensus 595 ~~~~~~ 600 (604)
T PRK10150 595 IPFGEK 600 (604)
T ss_pred Cccccc
Confidence 544433
No 95
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=25.41 E-value=1.3e+02 Score=31.06 Aligned_cols=77 Identities=21% Similarity=0.429 Sum_probs=49.9
Q ss_pred ccChHHHHHHHHcCCCee------------eecc-ccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEee----c-
Q 011733 316 HKYKEDVKLMAKTGLDAY------------RFSI-SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL----H- 377 (478)
Q Consensus 316 ~rykeDi~Lmk~lGvnay------------RFSI-sWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL----~- 377 (478)
...++=++.++++|+|+. +=++ .|++.++.-.+ .+ .|.+....+|++..++||+..--+ -
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~-~~-pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQG-KD-PGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCC-CC-CCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 446777899999999984 3333 56666543111 12 367889999999999999987554 1
Q ss_pred ----c--CCCCcccccccCCCcc
Q 011733 378 ----H--SDLPQALEDEYGGWIN 394 (478)
Q Consensus 378 ----H--~dlP~wL~d~yGGW~n 394 (478)
| -..|.|+..+..||.-
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~ 119 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVR 119 (311)
T ss_pred CchhhhhhcCchhheecCCCcee
Confidence 1 1256776533456553
No 96
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=25.22 E-value=1.1e+02 Score=28.24 Aligned_cols=95 Identities=22% Similarity=0.232 Sum_probs=51.1
Q ss_pred cceeEeCCchhHHHhhhhcccc--ccccCCCccccccchhhhhhhhh---hcceeeccccCCCCCCCCCCceeEEeccch
Q 011733 93 LKVLHVGPETCSVVSKLLKEED--TEAWGVEPYDLDDADANCRSLVR---KGIVRVADIKFPLPYRAKSFSLVIVSDAVD 167 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~--~~~~g~~p~~~~~~~~~~~~~~~---~g~~~~~d~~~~~~~r~~sfs~~~vsd~~D 167 (478)
..||.+|..+-.....+++.-. .+..|+++-+ +.-..|+.-.. +--+...|+. .+|+...+|.+++.+..+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeC
Confidence 4799999888776666655443 2556665421 11122222211 1234456664 4667778899998875543
Q ss_pred hchHHHHHHHHHHHHhcccCCcEEE
Q 011733 168 YLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 168 yl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
+. ..+.++|+.+.+....|-.+.
T Consensus 118 ~~--~~~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 118 NV--TDIQKALREMYRVLKPGGRLV 140 (223)
T ss_pred Cc--ccHHHHHHHHHHHcCCCcEEE
Confidence 32 123355555555555554433
No 97
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=25.22 E-value=72 Score=30.39 Aligned_cols=85 Identities=14% Similarity=0.098 Sum_probs=55.1
Q ss_pred hhhhHHHHHhcccccceeEeCCchhHHHhhhhcc-ccccccCCCccc--cccchhhhhhhh-hhcceeeccccCCCC--C
Q 011733 79 RALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKE-EDTEAWGVEPYD--LDDADANCRSLV-RKGIVRVADIKFPLP--Y 152 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~-~~~~~~g~~p~~--~~~~~~~~~~~~-~~g~~~~~d~~~~~~--~ 152 (478)
...+-..+.+++.-.+||-+|-.+-.....|.+. ...+.+|||+.. ++.+..+++..- .+--+..+|+.--+| +
T Consensus 28 ~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~ 107 (202)
T PRK00121 28 PAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF 107 (202)
T ss_pred CCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc
Confidence 4455567888888899999999998887777654 346789998875 444444443221 111245567711233 5
Q ss_pred CCCCCceeEEe
Q 011733 153 RAKSFSLVIVS 163 (478)
Q Consensus 153 r~~sfs~~~vs 163 (478)
...+|..+++.
T Consensus 108 ~~~~~D~V~~~ 118 (202)
T PRK00121 108 PDGSLDRIYLN 118 (202)
T ss_pred CccccceEEEE
Confidence 56789988875
No 98
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=25.15 E-value=83 Score=28.03 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=60.9
Q ss_pred ccccceeEeCCchhHHHhhhhccc--cccccCCCccccccchhhhhhhhh-hcc----eeeccccCCCC--CCCCCCcee
Q 011733 90 DSMLKVLHVGPETCSVVSKLLKEE--DTEAWGVEPYDLDDADANCRSLVR-KGI----VRVADIKFPLP--YRAKSFSLV 160 (478)
Q Consensus 90 ~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~g~~p~~~~~~~~~~~~~~~-~g~----~~~~d~~~~~~--~r~~sfs~~ 160 (478)
++-.+||.+|-.|-...-.|+++- ..+..||+.-+ +.=..+|...+ .|+ +.++||.- || +. ..|.++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEE
Confidence 355789999999999988888532 55677776432 22233444332 333 35678776 77 66 999999
Q ss_pred EEeccchhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 161 IVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 161 ~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
+....+.+. ....++|+.+.++..+|-.++
T Consensus 78 ~~~~~l~~~--~~~~~~l~~~~~~lk~~G~~i 107 (152)
T PF13847_consen 78 ISNGVLHHF--PDPEKVLKNIIRLLKPGGILI 107 (152)
T ss_dssp EEESTGGGT--SHHHHHHHHHHHHEEEEEEEE
T ss_pred EEcCchhhc--cCHHHHHHHHHHHcCCCcEEE
Confidence 998777544 223456666666666554444
No 99
>PRK10148 hypothetical protein; Provisional
Probab=24.47 E-value=2.4e+02 Score=25.86 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=58.1
Q ss_pred hhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccc--cccchhhhhhhhhhcceeeccccCCCCCC
Q 011733 76 EVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGIVRVADIKFPLPYR 153 (478)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~--~~~~~~~~~~~~~~g~~~~~d~~~~~~~r 153 (478)
....||-+.++++|.....+...|. .-.+.+-+..++++=. -++.=-++.=-+--+.+-++|---.-+-.
T Consensus 12 ~a~eAi~FY~~~Fgae~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~~~~ 83 (147)
T PRK10148 12 NCADAIAYYQQTLGAELLYKISFGE--------MPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSGKAH 83 (147)
T ss_pred CHHHHHHHHHHHhCCEEEEEEEccc--------CCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCcCCC
Confidence 4678999999999987666655441 1111111122322100 01111122112223445556642111212
Q ss_pred CCCCceeEEeccchhchHHHHHHHHHHHHhcccCCcEEEeccccceecccccccccccCC---cceeeeEEE
Q 011733 154 AKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKVSELSKFGRPA---KLRSSTWWI 222 (478)
Q Consensus 154 ~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~~GY~~WSlmDn~~~fEW~~Gy---~~RfGl~~V 222 (478)
..++|+.+..+..|-. .++..+| ++|..|. |.-++ .-|+.-| +-|||.-|.
T Consensus 84 ~~~~~l~l~~~d~ee~-----~~~~~aL----a~gg~v~--------mpl~~-~~wg~~~g~v~D~fGi~W~ 137 (147)
T PRK10148 84 YSGFTLVLDTQDVEEG-----KRWFDNL----AANGKIE--------MAWQE-TFWAHGFGKVTDKFGVPWM 137 (147)
T ss_pred CCeEEEEEECCCHHHH-----HHHHHHh----hCCCEEE--------ecchh-cchhhccEEEECCCCCEEE
Confidence 2367776655444332 2344455 5676766 43322 3466554 678998775
No 100
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=24.39 E-value=91 Score=32.44 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=37.3
Q ss_pred hHHHHHHHHcCCCeeeecc-ccc-eeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCC
Q 011733 319 KEDVKLMAKTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLP 382 (478)
Q Consensus 319 keDi~Lmk~lGvnayRFSI-sWs-RI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP 382 (478)
++.++.|+++|++...+++ +-. +++.. -|.. ...+-+.+.|+.+++.|++++-.-.-+.+|
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~-lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlP 162 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLF-LGRQ--HSAKNIAPAIETALKSGIENISLDLMYGLP 162 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHH-hCCC--CCHHHHHHHHHHHHHcCCCeEEEeccCCCC
Confidence 6889999999998555555 332 22222 1211 124566778889999999865443344454
No 101
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=24.10 E-value=3.9e+02 Score=26.73 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=67.4
Q ss_pred hhhhHHHHHh-cccccceeEeCCchhHH---Hhhhhccccc--cccCCCccccccchhhhhhhhhhcc------------
Q 011733 79 RALPVLKKAY-GDSMLKVLHVGPETCSV---VSKLLKEEDT--EAWGVEPYDLDDADANCRSLVRKGI------------ 140 (478)
Q Consensus 79 ~~~~~~~~~~-~~~~~~~l~~~p~~~~~---~~~~~~~~~~--~~~g~~p~~~~~~~~~~~~~~~~g~------------ 140 (478)
..+|-|.+.= ...-.+||-+|=.|-.- ++-+|.|... ..|+++ ..-.|.+..+-...|+|+
T Consensus 86 ~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~ 164 (264)
T smart00138 86 KVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEKARAGIYPERELEDLPKA 164 (264)
T ss_pred HHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHHHHcCCCCHHHHhcCCHH
Confidence 3467665431 22336899998776642 3444444321 234433 222344555555555554
Q ss_pred ----------------------e--eeccccCCCCCCCCCCceeEEeccchhchHHHHHHHHHHHHhcccCCcEEEec
Q 011733 141 ----------------------V--RVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIFAG 194 (478)
Q Consensus 141 ----------------------~--~~~d~~~~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~~G 194 (478)
| ++.|+-- +|+...+|.+|...+-+-|+.+.-..+++..++++...|-.+..|
T Consensus 165 ~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~-~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 165 LLARYFSRVEDKYRVKPELKERVRFAKHNLLA-ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHhhhEEeCCCeEEEChHHhCcCEEeeccCCC-CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 1 2344433 344567899988888888887777778888888888888776645
No 102
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=24.08 E-value=61 Score=33.85 Aligned_cols=34 Identities=41% Similarity=0.555 Sum_probs=21.3
Q ss_pred CCCCCCccccccccccCCCCCchhHHHHHHHHHhh
Q 011733 12 LADGGSIPFVGSAHSKSRSSPLLSVILLAVGAVLL 46 (478)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (478)
.|+.|.+ -..+-.|||-|+.|++|.|++-+.+|+
T Consensus 257 LGe~Gl~-~~SSnss~S~s~~l~piil~IG~vl~i 290 (305)
T PF04639_consen 257 LGENGLI-TKSSNSSKSVSDSLLPIILIIGGVLLI 290 (305)
T ss_pred cCccccc-ccccCccchhhhhhhHHHHHHHHHHHH
Confidence 4566633 333556788888999987766444443
No 103
>PLN02389 biotin synthase
Probab=24.06 E-value=1.8e+02 Score=31.17 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=40.4
Q ss_pred ChHHHHHHHHcCCCeeeeccccce-eecCCCCCCChhHHHHHHHHHHHHHHCCCcceEe
Q 011733 318 YKEDVKLMAKTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 375 (478)
Q Consensus 318 ykeDi~Lmk~lGvnayRFSIsWsR-I~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VT 375 (478)
-+|.++.||++|++.|-.+++=++ ++|.-... ...+.+-+.++.+.+.||+...+
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~---~s~e~rl~ti~~a~~~Gi~v~sg 232 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITT---RSYDDRLETLEAVREAGISVCSG 232 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCC---CCHHHHHHHHHHHHHcCCeEeEE
Confidence 588999999999999999885233 55542111 13677778899999999987555
No 104
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=23.87 E-value=1.8e+02 Score=28.92 Aligned_cols=96 Identities=21% Similarity=0.268 Sum_probs=54.4
Q ss_pred HHHHHhcccccceeEeCCchhHHHhhhhccc----cccccCCCccc--cccchhhhhhhhhhcceeeccccCCCCCCCCC
Q 011733 83 VLKKAYGDSMLKVLHVGPETCSVVSKLLKEE----DTEAWGVEPYD--LDDADANCRSLVRKGIVRVADIKFPLPYRAKS 156 (478)
Q Consensus 83 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~----~~~~~g~~p~~--~~~~~~~~~~~~~~g~~~~~d~~~~~~~r~~s 156 (478)
.|.+.....-.+||.||-.|-.....|.+.- ..+..|+++.. ++-+..+. ..--+.++|+. .||+...|
T Consensus 77 ~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~-~lp~~~~s 151 (272)
T PRK11088 77 LLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSH-RLPFADQS 151 (272)
T ss_pred HHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecc-cCCCcCCc
Confidence 3444434444679999999998777665431 12567777642 11111110 01124677875 57888889
Q ss_pred CceeEEeccchhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 157 FSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 157 fs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
|.+++.... +. .++++.|+...|-.+.
T Consensus 152 fD~I~~~~~-----~~----~~~e~~rvLkpgG~li 178 (272)
T PRK11088 152 LDAIIRIYA-----PC----KAEELARVVKPGGIVI 178 (272)
T ss_pred eeEEEEecC-----CC----CHHHHHhhccCCCEEE
Confidence 999986533 22 2345566666553333
No 105
>PRK07094 biotin synthase; Provisional
Probab=23.79 E-value=1.2e+02 Score=30.76 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=36.5
Q ss_pred ChHHHHHHHHcCCCeeeeccc-c-ceeecCCCCCCChhHHHHHHHHHHHHHHCCCcce
Q 011733 318 YKEDVKLMAKTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 373 (478)
Q Consensus 318 ykeDi~Lmk~lGvnayRFSIs-W-sRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~ 373 (478)
-+|+++.|+++|++.+-++++ - .+++..-.... ..+-+.+.++.+++.||.+.
T Consensus 128 ~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~---s~~~~~~~i~~l~~~Gi~v~ 182 (323)
T PRK07094 128 SYEEYKAWKEAGADRYLLRHETADKELYAKLHPGM---SFENRIACLKDLKELGYEVG 182 (323)
T ss_pred CHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCC---CHHHHHHHHHHHHHcCCeec
Confidence 378899999999999988883 3 24443311112 24667778899999998643
No 106
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=23.65 E-value=98 Score=33.22 Aligned_cols=39 Identities=33% Similarity=0.588 Sum_probs=37.3
Q ss_pred CCCCceeEEeccchhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 154 AKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 154 ~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
..||+..+++|.-||+.+.-+++.+.+|.++...|..|.
T Consensus 293 ~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~ 331 (380)
T PF11899_consen 293 PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVL 331 (380)
T ss_pred CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 578999999999999999999999999999999999998
No 107
>PHA01812 hypothetical protein
Probab=23.36 E-value=74 Score=28.06 Aligned_cols=58 Identities=24% Similarity=0.146 Sum_probs=37.1
Q ss_pred eeEEeccchhchHHHHHHHHHHHHhcccCCcEEE-ecccccee--cccccccccccCCcceeeeE
Q 011733 159 LVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIF-AGYPGQHR--AKVSELSKFGRPAKLRSSTW 220 (478)
Q Consensus 159 ~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~-~GY~~WSl--mDn~~~fEW~~Gy~~RfGl~ 220 (478)
.|||.|...--.|..|.++++++ ||-+|=++|. +|-..... -.| -+=..||+..||-+
T Consensus 60 gvivtddynvnlpnhltelikem-radedvvdiinagevqftiyeyen---kkgqkgysinfgqv 120 (122)
T PHA01812 60 GVIVTDDYNVNLPNHLTELIKEM-RADEDVVDIINAGEVQFTIYEYEN---KKGQKGYSINFGQV 120 (122)
T ss_pred ceEEecCcccCCchHHHHHHHHH-hccchHhhhcccceEEEEEEeeec---cCCcccceeecccc
Confidence 46666554445688899999986 6777766665 34322222 234 55678888888853
No 108
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=23.33 E-value=1.2e+02 Score=30.71 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=45.1
Q ss_pred hHHHHHHHHcCCCeeeeccccceeecCC-CCCCChhHHHHHHHHHHHHHHCCCcceEeecc
Q 011733 319 KEDVKLMAKTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH 378 (478)
Q Consensus 319 keDi~Lmk~lGvnayRFSIsWsRI~P~G-~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H 378 (478)
.+|++.+.+.|++..|+.++=|...-.. .+.=-++.++-..+++...+++|++..+++-.
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 6799999999999999988544332221 11112567899999999999999999998853
No 109
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=23.30 E-value=1.5e+02 Score=28.38 Aligned_cols=57 Identities=21% Similarity=0.470 Sum_probs=38.1
Q ss_pred hHHHHHHHHcCCCeeeeccccceeecCC-CC-------CCChh--HHHHHHHHHHHHHHCCCcceEeec
Q 011733 319 KEDVKLMAKTGLDAYRFSISWSRLIPNG-RG-------PVNPK--GLQYYNNLINELISYGIQPHVTLH 377 (478)
Q Consensus 319 keDi~Lmk~lGvnayRFSIsWsRI~P~G-~G-------~vN~e--gv~~Y~~lId~L~~~GIeP~VTL~ 377 (478)
.+-|+-+++||+++.-++=-+. -|.+ .| .+|++ ..+=+++||+++.++||++++.+-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4668899999999987653332 1101 11 12221 356688999999999999998763
No 110
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=22.70 E-value=1.4e+02 Score=31.94 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=57.1
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhh----hcceeeccccCCCCCCCCCCceeEEeccchh
Q 011733 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVR----KGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~r~~sfs~~~vsd~~Dy 168 (478)
.+||-||-.+-.....|.++-..+..||++.. ++-..++.-.. +--+.++|+. .+|+...+|.+++....+.+
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~~A~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMISFALERAIGRKCSVEFEVADCT-KKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhhcCCCceEEEEcCcc-cCCCCCCCEEEEEECCcccc
Confidence 47999999886655555555466788888752 22222222111 1124457764 35666678999988777766
Q ss_pred chHHHHHHHHHHHHhcccCCcEEE
Q 011733 169 LSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 169 l~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
+. + ..++|.++.|+...|-.+.
T Consensus 345 ~~-d-~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 345 IQ-D-KPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred cC-C-HHHHHHHHHHHcCCCeEEE
Confidence 52 1 2355666666666665555
No 111
>PRK06202 hypothetical protein; Provisional
Probab=22.47 E-value=2.7e+02 Score=26.70 Aligned_cols=99 Identities=22% Similarity=0.239 Sum_probs=60.6
Q ss_pred ccccceeEeCCchhHHHhhhhcc---c--cccccCCCccccccchhhhhhhhh-hc-ceeeccccCCCCCCCCCCceeEE
Q 011733 90 DSMLKVLHVGPETCSVVSKLLKE---E--DTEAWGVEPYDLDDADANCRSLVR-KG-IVRVADIKFPLPYRAKSFSLVIV 162 (478)
Q Consensus 90 ~~~~~~l~~~p~~~~~~~~~~~~---~--~~~~~g~~p~~~~~~~~~~~~~~~-~g-~~~~~d~~~~~~~r~~sfs~~~v 162 (478)
..-.+||-+|-.|-.+...|.+. . ..+..||++.. +.-..++.... .+ -+++.|.. -+|....+|.+|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~-~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGVTFRQAVSD-ELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCCeEEEEecc-cccccCCCccEEEE
Confidence 34568999999987765555432 1 23677777743 22222333221 12 13333321 12334679999999
Q ss_pred eccchhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 163 SDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 163 sd~~Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
+..+.++....+.++|.++.|+.. |..++
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC-eeEEE
Confidence 999988877778889999988775 44444
No 112
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=22.16 E-value=1.7e+02 Score=31.07 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=52.8
Q ss_pred HHHHHHHcCCCeeeeccccceeecCCCCCCChhHHHHHHHHHHHHHHCCCcceEeeccCCCCcc
Q 011733 321 DVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQA 384 (478)
Q Consensus 321 Di~Lmk~lGvnayRFSIsWsRI~P~G~G~vN~egv~~Y~~lId~L~~~GIeP~VTL~H~dlP~w 384 (478)
+++.+|++|.++..|=+=|. |+++..+|..-.+|-+++.++|.+++|--|+-+..+|.+..
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~ 172 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERIS 172 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCccc
Confidence 56889999999999988665 77667899999999999999999999999999988875543
No 113
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=21.67 E-value=83 Score=30.67 Aligned_cols=101 Identities=22% Similarity=0.381 Sum_probs=61.3
Q ss_pred HhhHhhhhHHHHHhcccccceeEeCCchhHHHhhhhccccccccCCCccccccc-hhhhhhhhhh-cc---eeecccc-C
Q 011733 75 LEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDA-DANCRSLVRK-GI---VRVADIK-F 148 (478)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~-~~~~~~~~~~-g~---~~~~d~~-~ 148 (478)
.||.+|+++++. .++|-+|=....=-.=|-+.+ |-|.-.|+.++ -.+.+.+.++ ++ .+++||. +
T Consensus 20 s~v~~a~~~~~~------g~~LDlgcG~GRNalyLA~~G----~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 20 SEVLEAVPLLKP------GKALDLGCGEGRNALYLASQG----FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF 89 (192)
T ss_dssp HHHHHHCTTS-S------SEEEEES-TTSHHHHHHHHTT-----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB
T ss_pred HHHHHHHhhcCC------CcEEEcCCCCcHHHHHHHHCC----CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhc
Confidence 679999999863 499999977776554455444 66777777763 3345666543 32 2567773 4
Q ss_pred CCCCCCCCCceeEEeccchhchHHHHHHHHHHHHhcccCC
Q 011733 149 PLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDG 188 (478)
Q Consensus 149 ~~~~r~~sfs~~~vsd~~Dyl~~~YLn~~L~ai~r~~~DG 188 (478)
.+| ..|.+++-+....|+.+..+.+++..|..+..-|
T Consensus 90 ~~~---~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 90 DFP---EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp S-T---TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred ccc---CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCc
Confidence 433 4566544335678888888888888885554443
No 114
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=20.90 E-value=1.6e+02 Score=30.73 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=55.6
Q ss_pred cceeEeCCchhHHHhhhhccccccccCCCccccccchhhhhhhhhh-cc-----eeeccccCCCCCCCCCCceeEEeccc
Q 011733 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI-----VRVADIKFPLPYRAKSFSLVIVSDAV 166 (478)
Q Consensus 93 ~~~l~~~p~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~-g~-----~~~~d~~~~~~~r~~sfs~~~vsd~~ 166 (478)
.+||-||-.+-... ..|.+.+.+.+|||+..- .-..++.-.+. +. +..+|+. .||....+|..|+..+.+
T Consensus 133 ~~ILDIGCG~G~~s-~~La~~g~~V~GID~s~~--~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 133 LKFIDIGCGGGLLS-EPLARMGATVTGVDAVDK--NVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CEEEEeeCCCCHHH-HHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhHH
Confidence 37999999887754 445555678899987641 11122211111 11 2334432 355556799999998887
Q ss_pred hhchHHHHHHHHHHHHhcccCCcEEE
Q 011733 167 DYLSPKYLNRTLPELARVSVDGVVIF 192 (478)
Q Consensus 167 Dyl~~~YLn~~L~ai~r~~~DGv~V~ 192 (478)
.++.. ..+.|.+++++...|-.++
T Consensus 209 eHv~d--~~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 209 EHVAN--PAEFCKSLSALTIPNGATV 232 (322)
T ss_pred HhcCC--HHHHHHHHHHHcCCCcEEE
Confidence 76632 2456666666666665555
No 115
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=20.61 E-value=36 Score=36.03 Aligned_cols=35 Identities=14% Similarity=0.474 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHCCCcceEeeccCCCCccccccc
Q 011733 355 LQYYNNLINELISYGIQPHVTLHHSDLPQALEDEY 389 (478)
Q Consensus 355 v~~Y~~lId~L~~~GIeP~VTL~H~dlP~wL~d~y 389 (478)
.+-=+++++.+++.||+|++==+---.|..|.+++
T Consensus 94 ~~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~ 128 (333)
T PF05089_consen 94 AELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKY 128 (333)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHS
T ss_pred HHHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcC
Confidence 45567899999999999999998888999998876
No 116
>PLN02361 alpha-amylase
Probab=20.33 E-value=1.6e+02 Score=31.94 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=45.7
Q ss_pred cccccChHHHHHHHHcCCCeeeeccccceeecCCCC-----CCChh--HHHHHHHHHHHHHHCCCcceEee--ccC
Q 011733 313 DEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRG-----PVNPK--GLQYYNNLINELISYGIQPHVTL--HHS 379 (478)
Q Consensus 313 D~Y~rykeDi~Lmk~lGvnayRFSIsWsRI~P~G~G-----~vN~e--gv~~Y~~lId~L~~~GIeP~VTL--~H~ 379 (478)
.+|....+.++-+++||+++.=++=.....-+.|-. .+|+. ..+=++++|+++.++||++++-+ +|-
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~ 101 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHR 101 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccc
Confidence 478889999999999999998665433322222200 12211 23458999999999999998754 563
No 117
>KOG4836 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.05 E-value=37 Score=33.85 Aligned_cols=69 Identities=25% Similarity=0.320 Sum_probs=38.6
Q ss_pred cccccccccCCCCCchhHHHHHHHHHhhhhh-----hhcCCCCcchhhhhhhcccCcccchHhhHhhhhHHHHHhccc
Q 011733 19 PFVGSAHSKSRSSPLLSVILLAVGAVLLIGY-----LYSGSGKTTIEKEALSKVEGVVSCTLEVQRALPVLKKAYGDS 91 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (478)
++.|...++|+.--..+|.+.-+|.+-+++| +|++||-..---+|+++++.+.. ||.++--=-|+||..
T Consensus 67 ~~~gkVke~s~nt~~~~iVI~GiGv~g~~iY~i~~ElFs~~sp~~ifn~Al~~v~~~~~----~~~ifG~~iKgfGE~ 140 (215)
T KOG4836|consen 67 TFGGKVKEASSNTFYYIIVIAGIGVTGAFIYAIFGELFSSSSPQTIFNRALELVRANPE----VQGIFGESIKGFGEE 140 (215)
T ss_pred CCccchhhccccceeeeeeeeeccHHHHhHHHHHHHHhcCCCcHHHHHHHHHHHhcChH----HhhHhhhhhhhhhhh
Confidence 3445656666665555554444444444444 67877755555578888887655 444443333555543
Done!