Query 011735
Match_columns 478
No_of_seqs 229 out of 1001
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:39:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 5.8E-84 1.2E-88 636.8 21.5 244 207-477 1-244 (258)
2 KOG4441 Proteins containing BT 99.9 1.5E-23 3.2E-28 229.0 15.9 228 21-328 30-260 (571)
3 PHA02790 Kelch-like protein; P 99.9 3E-23 6.4E-28 222.3 9.4 126 21-156 16-146 (480)
4 PHA02713 hypothetical protein; 99.9 9.9E-23 2.1E-27 222.1 10.7 177 21-247 19-197 (557)
5 PHA03098 kelch-like protein; P 99.8 2.7E-20 5.9E-25 200.7 14.0 115 24-159 6-122 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 1.1E-17 2.5E-22 142.6 7.9 104 21-132 4-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 6E-16 1.3E-20 124.4 7.2 90 29-126 1-90 (90)
8 KOG2075 Topoisomerase TOP1-int 99.3 1.9E-11 4.2E-16 128.2 10.8 139 18-169 105-248 (521)
9 KOG4350 Uncharacterized conser 99.2 3.3E-12 7.1E-17 131.5 3.4 128 19-154 36-169 (620)
10 KOG4591 Uncharacterized conser 98.8 4.5E-09 9.8E-14 100.1 4.2 133 7-159 43-183 (280)
11 KOG4682 Uncharacterized conser 98.5 1.4E-07 3E-12 97.8 7.4 131 22-168 64-199 (488)
12 KOG0783 Uncharacterized conser 98.3 5.5E-07 1.2E-11 99.9 6.0 127 27-171 712-847 (1267)
13 KOG0783 Uncharacterized conser 98.3 1.2E-06 2.5E-11 97.4 6.7 65 26-92 557-633 (1267)
14 PF11822 DUF3342: Domain of un 97.9 1.2E-05 2.6E-10 82.1 4.2 94 30-133 1-104 (317)
15 smart00512 Skp1 Found in Skp1 97.0 0.00098 2.1E-08 57.4 5.0 80 30-112 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 96.7 0.00098 2.1E-08 56.0 2.1 82 30-114 1-88 (94)
17 KOG2716 Polymerase delta-inter 96.5 0.014 3.1E-07 57.7 9.4 95 30-133 7-105 (230)
18 KOG3473 RNA polymerase II tran 96.0 0.018 4E-07 49.6 6.1 75 35-112 25-112 (112)
19 KOG1724 SCF ubiquitin ligase, 95.0 0.05 1.1E-06 51.2 6.0 93 34-135 12-129 (162)
20 PF03931 Skp1_POZ: Skp1 family 94.6 0.11 2.4E-06 40.8 6.1 55 30-89 3-58 (62)
21 KOG2838 Uncharacterized conser 94.0 0.043 9.4E-07 55.4 3.3 87 24-112 127-218 (401)
22 KOG3840 Uncharaterized conserv 89.8 1.6 3.5E-05 45.0 8.7 112 22-135 90-222 (438)
23 KOG2838 Uncharacterized conser 88.0 0.4 8.6E-06 48.6 2.9 56 38-96 262-329 (401)
24 COG5201 SKP1 SCF ubiquitin lig 84.0 5 0.00011 36.6 7.5 90 33-133 8-122 (158)
25 KOG2714 SETA binding protein S 82.9 2.7 5.8E-05 45.1 6.2 82 30-114 13-99 (465)
26 PF01466 Skp1: Skp1 family, di 79.0 2 4.4E-05 35.2 3.1 34 95-134 11-44 (78)
27 KOG0511 Ankyrin repeat protein 72.1 3.7 8.1E-05 43.6 3.5 75 37-114 301-379 (516)
28 KOG1665 AFH1-interacting prote 68.5 21 0.00045 35.7 7.5 89 30-127 11-105 (302)
29 KOG1987 Speckle-type POZ prote 66.9 6 0.00013 39.7 3.7 90 36-133 109-201 (297)
30 KOG2016 NEDD8-activating compl 63.1 21 0.00044 38.9 6.8 110 354-471 294-434 (523)
31 KOG0511 Ankyrin repeat protein 60.4 1.5 3.2E-05 46.5 -2.1 90 18-113 138-232 (516)
32 KOG3713 Voltage-gated K+ chann 54.3 51 0.0011 36.2 8.1 93 26-127 29-134 (477)
33 PHA00617 ribbon-helix-helix do 35.2 49 0.0011 27.8 3.5 37 215-251 44-80 (80)
34 PF10929 DUF2811: Protein of u 35.0 29 0.00062 27.3 1.9 18 454-471 9-26 (57)
35 PF13764 E3_UbLigase_R4: E3 ub 33.8 28 0.00062 40.6 2.5 75 341-469 252-335 (802)
36 KOG2715 Uncharacterized conser 32.2 1.8E+02 0.0039 28.0 7.0 93 30-131 23-120 (210)
37 PF01402 RHH_1: Ribbon-helix-h 30.5 53 0.0011 22.7 2.6 35 216-250 5-39 (39)
38 PF14363 AAA_assoc: Domain ass 30.1 31 0.00066 29.5 1.6 29 443-471 29-57 (98)
39 COG3510 CmcI Cephalosporin hyd 28.9 40 0.00087 33.1 2.2 32 441-472 183-216 (237)
40 PF11123 DNA_Packaging_2: DNA 27.9 35 0.00075 28.4 1.4 16 453-468 31-46 (82)
41 PF10932 DUF2783: Protein of u 22.3 60 0.0013 25.8 1.7 20 453-475 11-30 (60)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=5.8e-84 Score=636.83 Aligned_cols=244 Identities=52% Similarity=0.783 Sum_probs=211.8
Q ss_pred CCchhhhhhccChhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhhcCCcccCCCCCCCCCCCCCCCchhhhhHHHHHHHH
Q 011735 207 KGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLE 286 (478)
Q Consensus 207 ~dWW~eDl~~L~~~lf~rvi~am~~~g~~~~~~i~~~l~~Ya~r~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llE 286 (478)
+|||||||+.|++++|+|||.+|+++|+.+ ++||++|++||+||||+..+...... ...........+||.+||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~-~~I~~~l~~Ya~k~l~~~~~~~~~~~-----~~~~~~~~~~~~~r~llE 74 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKP-EVIGEALMHYAKKWLPGLSRSSSGSS-----SSAESSTSSENEQRELLE 74 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCccccccccc-----ccccccchhHHHHHHHHH
Confidence 589999999999999999999999999965 79999999999999999865521111 111122346789999999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHHhhcCChhhHHHHHHHHHhhhcccccccccccCCCCCCCccccHHHHHHHHHHHH
Q 011735 287 SIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFK 366 (478)
Q Consensus 287 ~iv~lLP~ek~~vsc~fL~~LLr~A~~l~as~~cr~~LE~rIg~qLd~AtldDLLIPs~~~~~~tlYDVd~V~ril~~Fl 366 (478)
+||+|||.+|+++||+|||+|||+|++++||++||.+||+|||.|||||||+|||||+.....+|+||||+|+|||++||
T Consensus 75 tiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl 154 (258)
T PF03000_consen 75 TIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFL 154 (258)
T ss_pred HHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999994334359999999999999999
Q ss_pred hcCCCCCCCCCCCcccccccccccccchhhhhhhhhccCCCCchhhHHHHhhHHHHhhhhcCCCCCChhhHHHHHHhcCC
Q 011735 367 LQGQSPPTSPPRSKLGFERRRSRSAENINFELQESRRSSSASHGSKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPE 446 (478)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~nL~~~KF~~Lae~lPd 446 (478)
.+++..... +.......+.++..++.+||||||+||+|||+|+||||+||++|||++|+
T Consensus 155 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~ 213 (258)
T PF03000_consen 155 SQEEEAGEE---------------------EESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPD 213 (258)
T ss_pred hcccccccc---------------------cccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCH
Confidence 986542210 01111123356778999999999999999999999999999999999999
Q ss_pred ccccCCCchHHHHHHHHhhCCCCcHHhhccC
Q 011735 447 FSRLDHDDLYRAIDIYLKVNNELASIVFKIL 477 (478)
Q Consensus 447 ~aR~~~DgLYrAIDiYLk~Hp~ls~~Er~~l 477 (478)
+||++|||||||||||||+||+||++||++|
T Consensus 214 ~aR~~hD~LYrAID~YLk~Hp~ls~~Er~~l 244 (258)
T PF03000_consen 214 SARPSHDGLYRAIDIYLKAHPGLSEEERKRL 244 (258)
T ss_pred hhhhccchHHHHHHHHHHHcccCCHHHHHHH
Confidence 9999999999999999999999999999986
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.90 E-value=1.5e-23 Score=229.05 Aligned_cols=228 Identities=17% Similarity=0.200 Sum_probs=176.3
Q ss_pred ecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccccccH
Q 011735 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNI 100 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~NV 100 (478)
+|.++.+|||+|.|++++|++||.||||+|+|||+||++...+..+.+|+|++++ +++++++++|+||+++.|+.+||
T Consensus 30 lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i~~~nV 107 (571)
T KOG4441|consen 30 LREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYTGKLEISEDNV 107 (571)
T ss_pred HHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhcceEEechHhH
Confidence 8899999999999999999999999999999999999998766666899999987 79999999999999999999999
Q ss_pred HHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcc-hhh--HHHHhhcCCcchHHHHHhcchhHHHHHHHHhhccCCCC
Q 011735 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHG-WRD--SIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSK 177 (478)
Q Consensus 101 ~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~s-w~d--~ia~L~~C~~l~~~Ae~~~iv~rcidsla~ka~~~~~~ 177 (478)
+.|+.||.+|||++ |++.|++||.+++.++ |.+ .++..++|.+|...|+.+ |.+++.+-.
T Consensus 108 q~ll~aA~~lQi~~------v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~-i~~~F~~v~---------- 170 (571)
T KOG4441|consen 108 QELLEAASLLQIPE------VVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEY-ILQHFAEVS---------- 170 (571)
T ss_pred HHHHHHHHHhhhHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHHh----------
Confidence 99999999999997 8999999999999996 333 577888888888888774 445544311
Q ss_pred CCCccccCCCCCCCCCCCCCCcccccCCCCCchhhhhhccChhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhhcCCccc
Q 011735 178 VSLSHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISR 257 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~lf~rvi~am~~~g~~~~~~i~~~l~~Ya~r~L~~~~~ 257 (478)
=.||...||.+.+..+|..-.-. +..++-|.++ +-+|+-.=.
T Consensus 171 --------------------------------~~eefl~L~~~~l~~ll~~d~l~-v~~E~~vf~a----~~~Wv~~d~- 212 (571)
T KOG4441|consen 171 --------------------------------KTEEFLLLSLEELIGLLSSDDLN-VDSEEEVFEA----AMRWVKHDF- 212 (571)
T ss_pred --------------------------------ccHHhhCCCHHHHHhhccccCCC-cCCHHHHHHH----HHHHHhcCH-
Confidence 11677779999888888877544 3344444444 456663200
Q ss_pred CCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 011735 258 NGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRV 328 (478)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~qr~llE~iv~lLP~ek~~vsc~fL~~LLr~A~~l~as~~cr~~LE~rI 328 (478)
.....+-.-+-..|++ | .+|-.||.......-.+..+.+||.-|..=.
T Consensus 213 ------------------~~R~~~~~~ll~~vr~-~----ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 213 ------------------EEREEHLPALLEAVRL-P----LLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred ------------------hhHHHHHHHHHHhcCc-c----CCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 0000111112222222 3 3788999999999999999999999886544
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.88 E-value=3e-23 Score=222.32 Aligned_cols=126 Identities=11% Similarity=0.072 Sum_probs=104.9
Q ss_pred ecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecC--CCCCcHHHHHHHHHHHhCCccccccc
Q 011735 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP--DFPGGIDAFELCAKFCYGITITLSAY 98 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~--d~pgg~~~felv~~FcY~~~i~it~~ 98 (478)
++.+|.+|||+..+ |++|++||.|||++|+|||+||++++.+++ .+|.+. +++ +++|+.+++|+|||+|.||.+
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~--~~~l~~lldy~YTg~l~it~~ 91 (480)
T PHA02790 16 LSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLD--IHSLTSIVIYSYTGKVYIDSH 91 (480)
T ss_pred HHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcC--HHHHHHHHHhheeeeEEEecc
Confidence 57789999998855 669999999999999999999999876665 456653 776 799999999999999999999
Q ss_pred cHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcc-hhh--HHHHhhcCCcchHHHHH
Q 011735 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHG-WRD--SIVTLQSTKAFPLWSED 156 (478)
Q Consensus 99 NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~s-w~d--~ia~L~~C~~l~~~Ae~ 156 (478)
||+.|+.||.+|||++ |++.|++||.+++.++ |.+ .+|..++|.+|...|.+
T Consensus 92 nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~ 146 (480)
T PHA02790 92 NVVNLLRASILTSVEF------IIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKD 146 (480)
T ss_pred cHHHHHHHHHHhChHH------HHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999999986 8999999999999885 333 44555555555555544
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.88 E-value=9.9e-23 Score=222.11 Aligned_cols=177 Identities=14% Similarity=0.170 Sum_probs=130.2
Q ss_pred ecccCCceeEEEEEc-CEEEEecCcccccCCHHHHHhhcCCCCCC-CcceeecCCCCCcHHHHHHHHHHHhCCccccccc
Q 011735 21 SISSEVSSDLIIQVK-GTRYLLHKFPLLSKCLRLQRLCSESPESS-QHQIVQLPDFPGGIDAFELCAKFCYGITITLSAY 98 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~-g~~F~~HK~vLas~S~yfr~lf~~~~~~~-~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~ 98 (478)
+|.++.+|||+|.|+ |++|++||.|||++|+||++||++++.+. .+.+|+|++++ +++|+.+++|+||++ |+.+
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~--i~~~ 94 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH--ISSM 94 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC--CCHH
Confidence 788899999999998 89999999999999999999999986543 34789999998 799999999999997 6899
Q ss_pred cHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcchhhHHHHhhcCCcchHHHHHhcchhHHHHHHHHhhccCCCCC
Q 011735 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKV 178 (478)
Q Consensus 99 NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~sw~d~ia~L~~C~~l~~~Ae~~~iv~rcidsla~ka~~~~~~~ 178 (478)
||+.|+.||++|||+. |++.|++||.+++.++ ||.+++..++.++..+ ..+....-++.+-..
T Consensus 95 nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~~~---------NCl~i~~~~~~~~~~~-L~~~a~~~i~~~f~~- 157 (557)
T PHA02713 95 NVIDVLKCADYLLIDD------LVTDCESYIKDYTNHD---------TCIYMYHRLYEMSHIP-IVKYIKRMLMSNIPT- 157 (557)
T ss_pred HHHHHHHHHHHHCHHH------HHHHHHHHHHhhCCcc---------chHHHHHHHHhccchH-HHHHHHHHHHHHHHH-
Confidence 9999999999999986 8999999999999875 4444444444433211 112211112221100
Q ss_pred CCccccCCCCCCCCCCCCCCcccccCCCCCchhhhhhccChhHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 011735 179 SLSHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIY 247 (478)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~lf~rvi~am~~~g~~~~~~i~~~l~~Y 247 (478)
... -|++..|+.+.+..+|..=....+..++.|-++++.|
T Consensus 158 --------------------------v~~---~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W 197 (557)
T PHA02713 158 --------------------------LIT---TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKW 197 (557)
T ss_pred --------------------------HhC---ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHH
Confidence 000 1677889988888888753222244556676776444
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.83 E-value=2.7e-20 Score=200.67 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=103.4
Q ss_pred cCCceeEEEEE--cCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccccccHH
Q 011735 24 SEVSSDLIIQV--KGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIV 101 (478)
Q Consensus 24 ~~~lcDV~I~V--~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~NV~ 101 (478)
++.+|||+|.| +|++|++||.+|+++|+||++||++.+. + .+|+|++ + +++|+.+++|+|||+++|+.+||.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~-~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~ 79 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--E-NEINLNI-D--YDSFNEVIKYIYTGKINITSNNVK 79 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--C-ceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHH
Confidence 68899999998 9999999999999999999999998766 2 6899988 5 799999999999999999999999
Q ss_pred HHHHhHhhhccchhhccccHHHHHHHHHHHhhhcchhhHHHHhhcCCcchHHHHHhcc
Q 011735 102 AARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGI 159 (478)
Q Consensus 102 ~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~sw~d~ia~L~~C~~l~~~Ae~~~i 159 (478)
.|+.||++|||++ |++.|++||.+.+.. .||..++.+|+.+++
T Consensus 80 ~ll~~A~~l~~~~------l~~~C~~~l~~~l~~---------~nc~~~~~~a~~~~~ 122 (534)
T PHA03098 80 DILSIANYLIIDF------LINLCINYIIKIIDD---------NNCIDIYRFSFFYGC 122 (534)
T ss_pred HHHHHHHHhCcHH------HHHHHHHHHHHhCCH---------hHHHHHHHHHHHcCc
Confidence 9999999999986 999999999998865 367777777777653
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.72 E-value=1.1e-17 Score=142.56 Aligned_cols=104 Identities=27% Similarity=0.331 Sum_probs=90.6
Q ss_pred ecccCCceeEEEEEc-CEEEEecCcccccCCHHHHHhhcCC-CCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccc-c
Q 011735 21 SISSEVSSDLIIQVK-GTRYLLHKFPLLSKCLRLQRLCSES-PESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLS-A 97 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~-g~~F~~HK~vLas~S~yfr~lf~~~-~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it-~ 97 (478)
+..++.+||++|.|+ +++|++||.+|+++|+||++||... ..+....+|.+++++ +++|+.+++|+|++++.++ .
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-T
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHH
Confidence 455688999999999 8999999999999999999999987 343333578899998 8999999999999999998 9
Q ss_pred ccHHHHHHhHhhhccchhhccccHHHHHHHHHHHh
Q 011735 98 YNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSC 132 (478)
Q Consensus 98 ~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~ 132 (478)
+|+..++..|++|+|++ |.+.|+.||.+.
T Consensus 82 ~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 99999999999999986 999999999874
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.63 E-value=6e-16 Score=124.44 Aligned_cols=90 Identities=24% Similarity=0.300 Sum_probs=80.5
Q ss_pred eEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccccccHHHHHHhHh
Q 011735 29 DLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAE 108 (478)
Q Consensus 29 DV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~NV~~L~~AA~ 108 (478)
||++.|+|++|++||.+|+++|+||++||.+...+.....+.+++++ +++|+.+++|+|++++.++..|+..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999986543333688998876 7999999999999999999999999999999
Q ss_pred hhccchhhccccHHHHHH
Q 011735 109 YLQMTEDVEKGNLIYKIE 126 (478)
Q Consensus 109 ~LqM~e~~~~~nL~~~ce 126 (478)
+++|++ |+..|+
T Consensus 79 ~~~~~~------l~~~c~ 90 (90)
T smart00225 79 YLQIPG------LVELCE 90 (90)
T ss_pred HHCcHH------HHhhhC
Confidence 999986 677764
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.26 E-value=1.9e-11 Score=128.23 Aligned_cols=139 Identities=18% Similarity=0.239 Sum_probs=118.2
Q ss_pred ceeecccCCceeEEEEEcC-----EEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCc
Q 011735 18 AVRSISSEVSSDLIIQVKG-----TRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGIT 92 (478)
Q Consensus 18 ~~~~~~~~~lcDV~I~V~g-----~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~ 92 (478)
+.=+..+...+|+++.|++ +.||+||.+|+..|.-|.+||..+..++...+|+++|+. |.+|...++|+|+-.
T Consensus 105 ~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYsde 182 (521)
T KOG2075|consen 105 QAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYSDE 182 (521)
T ss_pred hHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhcch
Confidence 3434456789999999984 699999999999999999999987666634799999998 799999999999999
Q ss_pred cccccccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcchhhHHHHhhcCCcchHHHHHhcchhHHHHHHHH
Q 011735 93 ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIAS 169 (478)
Q Consensus 93 i~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~sw~d~ia~L~~C~~l~~~Ae~~~iv~rcidsla~ 169 (478)
+.+.++||..++.||.-.-.+. |...|.+||+..+.. .+.+..|.+|. .+.++-.++++|++.|.-
T Consensus 183 v~~~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~~--~naf~~L~q~A---~lf~ep~Li~~c~e~id~ 248 (521)
T KOG2075|consen 183 VKLAADTVITTLYAAKKYLVPA------LERQCVKFLRKNLMA--DNAFLELFQRA---KLFDEPSLISICLEVIDK 248 (521)
T ss_pred hhhhHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcCC--hHHHHHHHHHH---HhhcCHHHHHHHHHHhhh
Confidence 9999999999999999888874 899999999998866 35777777773 345666789999998864
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.24 E-value=3.3e-12 Score=131.51 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=94.2
Q ss_pred eeecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccccc
Q 011735 19 VRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAY 98 (478)
Q Consensus 19 ~~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~ 98 (478)
..++..+...||++.|++++|++||.+||++|.|||+|+-.++.+..+..|.|++-. +++|..+++|+|+|++.++..
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~--~eAF~~lLrYiYtg~~~l~~~ 113 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETN--SEAFRALLRYIYTGKIDLAGV 113 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccccc--HHHHHHHHHHHhhcceecccc
Confidence 346777889999999999999999999999999999999988777666889998754 799999999999999987653
Q ss_pred c---HHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhc-chhh--HHHHhhcCCcchHHH
Q 011735 99 N---IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILH-GWRD--SIVTLQSTKAFPLWS 154 (478)
Q Consensus 99 N---V~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~-sw~d--~ia~L~~C~~l~~~A 154 (478)
. ....+.-|...++.+ |-....+||.+.+.. +-+- -.|-|.+..+|-..+
T Consensus 114 ~ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C 169 (620)
T KOG4350|consen 114 EEDILLDYLSLAHRYGFIQ------LETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYC 169 (620)
T ss_pred hHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHH
Confidence 3 334444455555443 666777777766544 2222 334555555554443
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.78 E-value=4.5e-09 Score=100.13 Aligned_cols=133 Identities=19% Similarity=0.233 Sum_probs=104.6
Q ss_pred cCCCcccccCC---ceeecccCCceeEEEEEc---CEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHH
Q 011735 7 GSRPDTFYTSE---AVRSISSEVSSDLIIQVK---GTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDA 80 (478)
Q Consensus 7 gs~~~~f~~~~---~~~~~~~~~lcDV~I~V~---g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~ 80 (478)
.|-||.|-.+= -+-+.....++|+++.++ ++.+++||+|||++|++.+ |.++..+.. .+..+.|.. +++
T Consensus 43 eSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~dDad--~Ea 117 (280)
T KOG4591|consen 43 ESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDLDDAD--FEA 117 (280)
T ss_pred cCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhcccccC--HHH
Confidence 46688886653 112445678999999999 5689999999999999765 444443333 456677776 899
Q ss_pred HHHHHHHHhCCccccccccH--HHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcchhhHHHHhhcCCcchHHHHHhc
Q 011735 81 FELCAKFCYGITITLSAYNI--VAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLG 158 (478)
Q Consensus 81 felv~~FcY~~~i~it~~NV--~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~sw~d~ia~L~~C~~l~~~Ae~~~ 158 (478)
|..+++++||..|++..+.+ ..|+..|..+|..- |.++|+.=|...++ ..||..+...||+++
T Consensus 118 ~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l~---------V~NCIk~Ye~AEe~n 182 (280)
T KOG4591|consen 118 FHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALLH---------VDNCIKFYEFAEELN 182 (280)
T ss_pred HHHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHhh---------HhhHHHHHHHHHHhh
Confidence 99999999999999888765 56788999999874 88999998887774 469999999999987
Q ss_pred c
Q 011735 159 I 159 (478)
Q Consensus 159 i 159 (478)
.
T Consensus 183 ~ 183 (280)
T KOG4591|consen 183 A 183 (280)
T ss_pred H
Confidence 4
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.55 E-value=1.4e-07 Score=97.83 Aligned_cols=131 Identities=20% Similarity=0.246 Sum_probs=105.0
Q ss_pred cccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcce--eecCCCCCcHHHHHHHHHHHhCCcccccccc
Q 011735 22 ISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQI--VQLPDFPGGIDAFELCAKFCYGITITLSAYN 99 (478)
Q Consensus 22 ~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~--v~L~d~pgg~~~felv~~FcY~~~i~it~~N 99 (478)
..+|.-+||+|.+-|.+-++||.-| ..|+||..||.....+.+... ++|+|-.-...+|..++.=.|...|+|..+.
T Consensus 64 f~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~d 142 (488)
T KOG4682|consen 64 FLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSD 142 (488)
T ss_pred HhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHH
Confidence 3467889999999999999999866 569999999998755444344 4455433347999999999999999999999
Q ss_pred HHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcchhhHHHHhhcCCcchHHHHHhcchh---HHHHHHH
Q 011735 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITS---RCIEAIA 168 (478)
Q Consensus 100 V~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~sw~d~ia~L~~C~~l~~~Ae~~~iv~---rcidsla 168 (478)
|..++.||.+||.+ +|+++|.+-+.+.+.+. +--+....+..||+.+ .|.+=+-
T Consensus 143 v~gvlAaA~~lqld------gl~qrC~evMie~lspk---------ta~~yYea~ckYgle~vk~kc~ewl~ 199 (488)
T KOG4682|consen 143 VVGVLAAACLLQLD------GLIQRCGEVMIETLSPK---------TACGYYEAACKYGLESVKKKCLEWLL 199 (488)
T ss_pred HHHHHHHHHHHHHh------hHHHHHHHHHHHhcChh---------hhhHhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999997 49999999999999774 5556677777776543 5555443
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.34 E-value=5.5e-07 Score=99.93 Aligned_cols=127 Identities=15% Similarity=0.155 Sum_probs=96.0
Q ss_pred ceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHh-CCccccc-----cccH
Q 011735 27 SSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCY-GITITLS-----AYNI 100 (478)
Q Consensus 27 lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY-~~~i~it-----~~NV 100 (478)
.|||++. +|+.|.|||.+|++++.||..||.....+.. .+.....|-.++-++.|++|.| +-+..+- .+=+
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~s--S~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESS--SITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhc--cceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 3566665 8889999999999999999999997533222 2555556666899999999999 4455431 2225
Q ss_pred HHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcchhhHHHHhhcCCcchHHHHHhc---chhHHHHHHHHhh
Q 011735 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLG---ITSRCIEAIASKV 171 (478)
Q Consensus 101 ~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~sw~d~ia~L~~C~~l~~~Ae~~~---iv~rcidsla~ka 171 (478)
..++..|+.|=+++ |.+.|+.-|.+.+ .|++|..|+.+|.-|+ +-.+|+|=|.-.+
T Consensus 789 ~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 789 FEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNI 847 (1267)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhH
Confidence 67778888888886 8889999988888 6788988888887774 4568998665444
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.28 E-value=1.2e-06 Score=97.38 Aligned_cols=65 Identities=25% Similarity=0.364 Sum_probs=54.8
Q ss_pred CceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCC------------CCcceeecCCCCCcHHHHHHHHHHHhCCc
Q 011735 26 VSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPES------------SQHQIVQLPDFPGGIDAFELCAKFCYGIT 92 (478)
Q Consensus 26 ~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~------------~~~~~v~L~d~pgg~~~felv~~FcY~~~ 92 (478)
-.-|||+.||+.-|++||++|+++|++||+||....+. ..+.++.+.++| |.+||.++.|+||.+
T Consensus 557 s~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 557 SFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred ccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 35699999999999999999999999999999864322 113566688999 699999999999985
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.86 E-value=1.2e-05 Score=82.15 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=75.7
Q ss_pred EEEEEcC------EEEEecCcccccCCHHHHHhhcC---CCCCCCcceeecC-CCCCcHHHHHHHHHHHhCCcccccccc
Q 011735 30 LIIQVKG------TRYLLHKFPLLSKCLRLQRLCSE---SPESSQHQIVQLP-DFPGGIDAFELCAKFCYGITITLSAYN 99 (478)
Q Consensus 30 V~I~V~g------~~F~~HK~vLas~S~yfr~lf~~---~~~~~~~~~v~L~-d~pgg~~~felv~~FcY~~~i~it~~N 99 (478)
|+|+|-| +.|.|.+.+|.+.=+||+..+.. .......-.|-.+ |+ .+|+.+++|+.+..-.|+++|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 4666643 48999999999999999999964 2111111233344 66 599999999999999999999
Q ss_pred HHHHHHhHhhhccchhhccccHHHHHHHHHHHhh
Q 011735 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (478)
Q Consensus 100 V~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v 133 (478)
|+.++-.++||||++ |++.|-.|+..++
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999986 9999999987665
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.03 E-value=0.00098 Score=57.42 Aligned_cols=80 Identities=11% Similarity=0.242 Sum_probs=60.7
Q ss_pred EEEE-EcCEEEEecCcccccCCHHHHHhhcCCCC-CCCcceeecCCCCCcHHHHHHHHHHHhCCc-----------c---
Q 011735 30 LIIQ-VKGTRYLLHKFPLLSKCLRLQRLCSESPE-SSQHQIVQLPDFPGGIDAFELCAKFCYGIT-----------I--- 93 (478)
Q Consensus 30 V~I~-V~g~~F~~HK~vLas~S~yfr~lf~~~~~-~~~~~~v~L~d~pgg~~~felv~~FcY~~~-----------i--- 93 (478)
|+++ -+|+.|.+.+.+. ..|+-++.|+..... ......|.|++++ +.+++.|++||+--+ +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 4444 4788999999855 689999999986432 1122479999998 599999999998321 1
Q ss_pred -----ccccccHHHHHHhHhhhcc
Q 011735 94 -----TLSAYNIVAARCAAEYLQM 112 (478)
Q Consensus 94 -----~it~~NV~~L~~AA~~LqM 112 (478)
.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1666789999999999986
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.66 E-value=0.00098 Score=55.97 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=60.6
Q ss_pred EEEEEcCEEEEecCcccc-cCCHHHHHhhcCC---CCCCCcceeecCCCCCcHHHHHHHHHHHhC-Cccccc-cccHHHH
Q 011735 30 LIIQVKGTRYLLHKFPLL-SKCLRLQRLCSES---PESSQHQIVQLPDFPGGIDAFELCAKFCYG-ITITLS-AYNIVAA 103 (478)
Q Consensus 30 V~I~V~g~~F~~HK~vLa-s~S~yfr~lf~~~---~~~~~~~~v~L~d~pgg~~~felv~~FcY~-~~i~it-~~NV~~L 103 (478)
|++.|||+.|.+-+..|. -...+|.+|+... ........+-|. -.|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999998 4467999999853 111112455553 237999999999999 777764 6789999
Q ss_pred HHhHhhhccch
Q 011735 104 RCAAEYLQMTE 114 (478)
Q Consensus 104 ~~AA~~LqM~e 114 (478)
+.-|+|+++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999986
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.014 Score=57.66 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=76.3
Q ss_pred EEEEEcCEEEEecCcccccCCHHHHHhhcCCC--CCCCcceeecCCCCCcHHHHHHHHHHHhCCcccc--ccccHHHHHH
Q 011735 30 LIIQVKGTRYLLHKFPLLSKCLRLQRLCSESP--ESSQHQIVQLPDFPGGIDAFELCAKFCYGITITL--SAYNIVAARC 105 (478)
Q Consensus 30 V~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~--~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~i--t~~NV~~L~~ 105 (478)
|.+.|||..|..+|.-|.-..++|+.|+.... ..+....|-|.- .|.=|++|++|+=.|.+.| +..++..|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDR---SpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDR---SPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecC---ChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 45899999999999999999999999999763 222223455432 3689999999999777665 5567889999
Q ss_pred hHhhhccchhhccccHHHHHHHHHHHhh
Q 011735 106 AAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (478)
Q Consensus 106 AA~~LqM~e~~~~~nL~~~ce~FL~~~v 133 (478)
=|+|..+++ |++.|+.=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999985 9999998777654
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.01 E-value=0.018 Score=49.57 Aligned_cols=75 Identities=13% Similarity=0.231 Sum_probs=59.3
Q ss_pred cCEEEEecCcccccCCHHHHHhhcCCC--CCCCcceeecCCCCCcHHHHHHHHHHH-----hCCc------cccccccHH
Q 011735 35 KGTRYLLHKFPLLSKCLRLQRLCSESP--ESSQHQIVQLPDFPGGIDAFELCAKFC-----YGIT------ITLSAYNIV 101 (478)
Q Consensus 35 ~g~~F~~HK~vLas~S~yfr~lf~~~~--~~~~~~~v~L~d~pgg~~~felv~~Fc-----Y~~~------i~it~~NV~ 101 (478)
+|++|-+-|. .|.-|+-+|+|+.... .+.+..+|.+++|| +..+|.+..|. |++. ++|-++-+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 7789988666 6778999999999632 22333689999999 78999998876 4433 568889999
Q ss_pred HHHHhHhhhcc
Q 011735 102 AARCAAEYLQM 112 (478)
Q Consensus 102 ~L~~AA~~LqM 112 (478)
.|+.||+||+.
T Consensus 102 eLL~aAn~Lec 112 (112)
T KOG3473|consen 102 ELLMAANYLEC 112 (112)
T ss_pred HHHHHhhhhcC
Confidence 99999999973
No 19
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.05 Score=51.17 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=71.0
Q ss_pred EcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCcc--------------------
Q 011735 34 VKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITI-------------------- 93 (478)
Q Consensus 34 V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i-------------------- 93 (478)
-+|+.|.+-.. .|.+|.-++.++.+..-......|.|++|. +.+|..|++|||--+-
T Consensus 12 sDG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 12 SDGEIFEVEEE-VARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred cCCceeehhHH-HHHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 37888888766 567799999998864221111468899987 6999999999996321
Q ss_pred -----ccccccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhc
Q 011735 94 -----TLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILH 135 (478)
Q Consensus 94 -----~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~ 135 (478)
.+...++..|.-||.||+|. +|++.||..+...+--
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~------gLl~~~ck~va~mikg 129 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIK------GLLDLTCKTVANMIKG 129 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccH------HHHHHHHHHHHHHHcc
Confidence 23445889999999999998 4999999999887743
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.60 E-value=0.11 Score=40.76 Aligned_cols=55 Identities=7% Similarity=0.271 Sum_probs=42.4
Q ss_pred EEEEE-cCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHh
Q 011735 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCY 89 (478)
Q Consensus 30 V~I~V-~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY 89 (478)
|+++- ||+.|.+.+.+ |-.|+.++.|+........ .|.|++++ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~~~--~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDEDE--PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCCGT--EEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhccccc--ccccCccC--HHHHHHHHHHHH
Confidence 34443 78899998875 4589999999986543322 69999998 699999999997
No 21
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.05 E-value=0.043 Score=55.36 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=63.8
Q ss_pred cCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCC--cceeecCCCCCcHHHHHHHHHHHhCCccc---cccc
Q 011735 24 SEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQ--HQIVQLPDFPGGIDAFELCAKFCYGITIT---LSAY 98 (478)
Q Consensus 24 ~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~--~~~v~L~d~pgg~~~felv~~FcY~~~i~---it~~ 98 (478)
.....||-|......|++||+.|+++|++|+-+.....+... -..++.-+|+ -++|+..+.+.|+|..- +.-.
T Consensus 127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~tgEfgmEd~~fq 204 (401)
T KOG2838|consen 127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLITGEFGMEDLGFQ 204 (401)
T ss_pred eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHhcccchhhcCCc
Confidence 345679999999999999999999999999999887544332 1345666776 58999999999998763 3334
Q ss_pred cHHHHHHhHhhhcc
Q 011735 99 NIVAARCAAEYLQM 112 (478)
Q Consensus 99 NV~~L~~AA~~LqM 112 (478)
|+..|-.-.+-++-
T Consensus 205 n~diL~QL~edFG~ 218 (401)
T KOG2838|consen 205 NSDILEQLCEDFGC 218 (401)
T ss_pred hHHHHHHHHHhhCC
Confidence 55555444444443
No 22
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=89.83 E-value=1.6 Score=44.97 Aligned_cols=112 Identities=18% Similarity=0.235 Sum_probs=82.5
Q ss_pred cccCCceeEEEEEcCEEEEecCcccccCC-HHHHHhhcCCC---CCCCcceeecC-CCCCcHHHHHHHHHHHhCCccccc
Q 011735 22 ISSEVSSDLIIQVKGTRYLLHKFPLLSKC-LRLQRLCSESP---ESSQHQIVQLP-DFPGGIDAFELCAKFCYGITITLS 96 (478)
Q Consensus 22 ~~~~~lcDV~I~V~g~~F~~HK~vLas~S-~yfr~lf~~~~---~~~~~~~v~L~-d~pgg~~~felv~~FcY~~~i~it 96 (478)
|..|..--++..|++..|-.-+++|-+.- .-+-.||..+- ..+...+.++- ++. ...|..|++|--+|.|.--
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~--s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMT--SSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchh--HHHHHHHHHHHhcCceeCC
Confidence 44566667899999999999999988763 33456776531 22223567764 664 7999999999889988754
Q ss_pred c-ccHHHHHHhHhhhccch---------------hhccccHHHHHHHHHHHhhhc
Q 011735 97 A-YNIVAARCAAEYLQMTE---------------DVEKGNLIYKIEVFFNSCILH 135 (478)
Q Consensus 97 ~-~NV~~L~~AA~~LqM~e---------------~~~~~nL~~~ce~FL~~~v~~ 135 (478)
+ -.|..|+.|.+||-++= +++..+-.++-+.||++.+++
T Consensus 168 ~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~ILP 222 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIILP 222 (438)
T ss_pred CCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 4 56899999999998762 234455678888999998877
No 23
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=87.97 E-value=0.4 Score=48.64 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=39.1
Q ss_pred EEEecCcccccCCHHHHHhhcC----CCCC-----CCcceeecCC--CCCcHHHHHH-HHHHHhCCccccc
Q 011735 38 RYLLHKFPLLSKCLRLQRLCSE----SPES-----SQHQIVQLPD--FPGGIDAFEL-CAKFCYGITITLS 96 (478)
Q Consensus 38 ~F~~HK~vLas~S~yfr~lf~~----~~~~-----~~~~~v~L~d--~pgg~~~fel-v~~FcY~~~i~it 96 (478)
++.+||.+.+++|++||.++.. +.+. ....+|.+.. || .+|.. ++.|+||.+++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhheecccchh
Confidence 5789999999999999998753 2111 1124677653 44 66664 5688999888764
No 24
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.02 E-value=5 Score=36.62 Aligned_cols=90 Identities=11% Similarity=0.177 Sum_probs=66.1
Q ss_pred EEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccc---------c--------
Q 011735 33 QVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITIT---------L-------- 95 (478)
Q Consensus 33 ~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~---------i-------- 95 (478)
..+|+.|.+.+. .|-+|-.++.|+....+.+. .+.++++. +..|..+.+||--.+=. +
T Consensus 8 s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~--p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~ 82 (158)
T COG5201 8 SIDGEIFRVDEN-IAERSILIKNMLCDSTACNY--PIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDF 82 (158)
T ss_pred ecCCcEEEehHH-HHHHHHHHHHHhccccccCC--CCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCCccH
Confidence 468889999876 68889999999886554332 34455665 78999999999732211 1
Q ss_pred --------ccccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhh
Q 011735 96 --------SAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (478)
Q Consensus 96 --------t~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v 133 (478)
.......+.-||.||++.. |++.||.-..+.+
T Consensus 83 wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 83 WDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred HHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 2233567788999999986 8999999888877
No 25
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=82.91 E-value=2.7 Score=45.14 Aligned_cols=82 Identities=13% Similarity=0.012 Sum_probs=60.7
Q ss_pred EEEEEcCEEEEecCcccccCC--HHHHHhhcCCCCCC--CcceeecCCCCCcHHHHHHHHHHHhCCccccccccHHHHHH
Q 011735 30 LIIQVKGTRYLLHKFPLLSKC--LRLQRLCSESPESS--QHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARC 105 (478)
Q Consensus 30 V~I~V~g~~F~~HK~vLas~S--~yfr~lf~~~~~~~--~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~NV~~L~~ 105 (478)
|.+.|||+.|.--+.-|+... .+|.+|++...... ...-|-|. -.|+.|..+++|.-|+++.+..--...++-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 678999999999999887765 79999997532211 11224432 237999999999999999995544444444
Q ss_pred -hHhhhccch
Q 011735 106 -AAEYLQMTE 114 (478)
Q Consensus 106 -AA~~LqM~e 114 (478)
=|.|++++.
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 899999986
No 26
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=79.04 E-value=2 Score=35.17 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=28.2
Q ss_pred cccccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhh
Q 011735 95 LSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCIL 134 (478)
Q Consensus 95 it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~ 134 (478)
++...+..|+.||.||+|.. |++.|+.++...+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKG------LLDLCCKYIANMIK 44 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHhc
Confidence 46678999999999999985 99999999988773
No 27
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=72.13 E-value=3.7 Score=43.56 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=56.7
Q ss_pred EEEEecCcccccCCHHHHHhhcCCCCC-CCcc---eeecCCCCCcHHHHHHHHHHHhCCccccccccHHHHHHhHhhhcc
Q 011735 37 TRYLLHKFPLLSKCLRLQRLCSESPES-SQHQ---IVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQM 112 (478)
Q Consensus 37 ~~F~~HK~vLas~S~yfr~lf~~~~~~-~~~~---~v~L~d~pgg~~~felv~~FcY~~~i~it~~NV~~L~~AA~~LqM 112 (478)
..+++|..++ ++..||+.||+..-.+ +.+. ...|+++. ....|.+++|.|+.+-+|-+.-...++--|+.|-.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 3599999876 5788999999986322 2112 23344443 57899999999999999999888888888988877
Q ss_pred ch
Q 011735 113 TE 114 (478)
Q Consensus 113 ~e 114 (478)
..
T Consensus 378 ~~ 379 (516)
T KOG0511|consen 378 AD 379 (516)
T ss_pred hh
Confidence 64
No 28
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=68.49 E-value=21 Score=35.71 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=65.5
Q ss_pred EEEEEcCEEEEecCcccccC--CHHHHHhhcCCC---CCCCcceeecCCCCCcHHHHHHHHHHHhCCcc-ccccccHHHH
Q 011735 30 LIIQVKGTRYLLHKFPLLSK--CLRLQRLCSESP---ESSQHQIVQLPDFPGGIDAFELCAKFCYGITI-TLSAYNIVAA 103 (478)
Q Consensus 30 V~I~V~g~~F~~HK~vLas~--S~yfr~lf~~~~---~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i-~it~~NV~~L 103 (478)
|.+.++|+.|.-...-|.-+ =..+-+||.... +++.+.-+-|. = .|.-||-|++|.-.|.| ..+.-|+..+
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID-R--sp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID-R--SPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc-c--CchhhHHHHHHHhcCceeecCCccHHHH
Confidence 66789999999888888777 347889998642 22222334433 2 25899999999998876 4677899999
Q ss_pred HHhHhhhccchhhccccHHHHHHH
Q 011735 104 RCAAEYLQMTEDVEKGNLIYKIEV 127 (478)
Q Consensus 104 ~~AA~~LqM~e~~~~~nL~~~ce~ 127 (478)
+.+|.|+|+-. |++.-+.
T Consensus 88 LeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHhhHHhhHh------HHhHHhh
Confidence 99999999964 5555544
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.87 E-value=6 Score=39.70 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=64.6
Q ss_pred CEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccccccHH---HHHHhHhhhcc
Q 011735 36 GTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIV---AARCAAEYLQM 112 (478)
Q Consensus 36 g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~NV~---~L~~AA~~LqM 112 (478)
+..+..|+.+++++|+-|+.|+.....+.....+.+.+.. ++.++.+..|.|...-.-+..++. .+.++|...+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 4569999999999999999999875332222345666654 688999999999854433344443 66667766666
Q ss_pred chhhccccHHHHHHHHHHHhh
Q 011735 113 TEDVEKGNLIYKIEVFFNSCI 133 (478)
Q Consensus 113 ~e~~~~~nL~~~ce~FL~~~v 133 (478)
. .|...|...|.+.+
T Consensus 187 ~------~lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 R------HLKLACMPVLLSLI 201 (297)
T ss_pred H------HHHHHHHHHHHHHH
Confidence 5 48889999888766
No 30
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=63.05 E-value=21 Score=38.94 Aligned_cols=110 Identities=18% Similarity=0.254 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccchh-hhhhhhhccCCCCchhhHHHHhhHHHHhhhhcCC---
Q 011735 354 DVDIVMTILEQFKLQGQSPPTSPPRSKLGFERRRSRSAENIN-FELQESRRSSSASHGSKLKVAKLVDGYLQEIAKD--- 429 (478)
Q Consensus 354 DVd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D--- 429 (478)
|-..+.+.+++|+..++.+..+.+-..|+|+..-.. . +. +-.+.. -......+|.+.+-.+|.+++.+
T Consensus 294 ~FWim~~aLk~Fv~~e~~g~lPL~GtlPDM~ssTe~--Y-I~Lq~iY~e-----KA~~D~~~v~~~v~~vlk~lgr~~~s 365 (523)
T KOG2016|consen 294 DFWIMAAALKEFVLKEEGGFLPLRGTLPDMTSSTEH--Y-IRLQKIYHE-----KAEADALEVERRVQEVLKSLGRSPDS 365 (523)
T ss_pred HHHHHHHHHHHHHcccCCCccCCCCCCCccccCHHH--H-HHHHHHHHH-----HHHhhHHHHHHHHHHHHHHhCCCccc
Confidence 778889999999997544332223345666532110 0 00 000110 01234688999999999999988
Q ss_pred -------------CCCChhhHHHHHHhcCCccc----cC-CCc---------hHHHHHHHHhhCCCCcH
Q 011735 430 -------------VNLPLSKFITIAESVPEFSR----LD-HDD---------LYRAIDIYLKVNNELAS 471 (478)
Q Consensus 430 -------------~nL~~~KF~~Lae~lPd~aR----~~-~Dg---------LYrAIDiYLk~Hp~ls~ 471 (478)
.+|++-.|..++|-.-++.+ .+ .|. +|||+|-||+.|-....
T Consensus 366 Is~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG 434 (523)
T KOG2016|consen 366 ISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPG 434 (523)
T ss_pred cCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCC
Confidence 35777777888886554444 33 334 69999999999876543
No 31
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=60.42 E-value=1.5 Score=46.49 Aligned_cols=90 Identities=13% Similarity=-0.012 Sum_probs=55.9
Q ss_pred ceeecccCCc--eeEEEEE-cCEEEEecCcccccCCHHHHH-hhcCCCCCCCccee-ecCCCCCcHHHHHHHHHHHhCCc
Q 011735 18 AVRSISSEVS--SDLIIQV-KGTRYLLHKFPLLSKCLRLQR-LCSESPESSQHQIV-QLPDFPGGIDAFELCAKFCYGIT 92 (478)
Q Consensus 18 ~~~~~~~~~l--cDV~I~V-~g~~F~~HK~vLas~S~yfr~-lf~~~~~~~~~~~v-~L~d~pgg~~~felv~~FcY~~~ 92 (478)
++-++-+++. .|++..+ +|..|.+||+.|+++|.||.. +......+ .+| .+.-+ +.+|+..++|.|-..
T Consensus 138 ~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~---heI~~~~v~---~~~f~~flk~lyl~~ 211 (516)
T KOG0511|consen 138 QSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG---HEIEAHRVI---LSAFSPFLKQLYLNT 211 (516)
T ss_pred HHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc---Cchhhhhhh---HhhhhHHHHHHHHhh
Confidence 4445556553 3888766 667899999999999877664 33322221 234 33344 589999999999653
Q ss_pred cccccccHHHHHHhHhhhccc
Q 011735 93 ITLSAYNIVAARCAAEYLQMT 113 (478)
Q Consensus 93 i~it~~NV~~L~~AA~~LqM~ 113 (478)
=.+-+..-.+|+.-...++..
T Consensus 212 na~~~~qynallsi~~kF~~e 232 (516)
T KOG0511|consen 212 NAEWKDQYNALLSIEVKFSKE 232 (516)
T ss_pred hhhhhhHHHHHHhhhhhccHH
Confidence 223333335556655555554
No 32
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=54.25 E-value=51 Score=36.23 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=58.0
Q ss_pred CceeEEEEEcCEEEEecCcccccC-CHHHHHhhcCCCCC----------CCcceeecCCCCCcHHHHHHHHHHHhCCccc
Q 011735 26 VSSDLIIQVKGTRYLLHKFPLLSK-CLRLQRLCSESPES----------SQHQIVQLPDFPGGIDAFELCAKFCYGITIT 94 (478)
Q Consensus 26 ~lcDV~I~V~g~~F~~HK~vLas~-S~yfr~lf~~~~~~----------~~~~~v~L~d~pgg~~~felv~~FcY~~~i~ 94 (478)
...-|.|.|||..+.+-+..|... =.++.++......+ ....+.-+ +-.|.+|..|++|-+||+++
T Consensus 29 ~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF---DR~P~~F~~Vl~fYrtGkLH 105 (477)
T KOG3713|consen 29 LDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF---DRHPGAFAYVLNFYRTGKLH 105 (477)
T ss_pred cCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeee---ccChHHHHHHHHHHhcCeec
Confidence 345689999999999988877763 22344444422110 01134443 33468999999999999998
Q ss_pred cccccHHHH--HHhHhhhccchhhccccHHHHHHH
Q 011735 95 LSAYNIVAA--RCAAEYLQMTEDVEKGNLIYKIEV 127 (478)
Q Consensus 95 it~~NV~~L--~~AA~~LqM~e~~~~~nL~~~ce~ 127 (478)
.- .||..+ ..=-+|-++++ +-++.||.
T Consensus 106 ~p-~~vC~~~F~eEL~yWgI~~-----~~le~CC~ 134 (477)
T KOG3713|consen 106 VP-ADVCPLSFEEELDYWGIDE-----AHLESCCW 134 (477)
T ss_pred cc-cccchHHHHHHHHHhCCCh-----hhhhHHhH
Confidence 63 344333 33446777876 34555553
No 33
>PHA00617 ribbon-helix-helix domain containing protein
Probab=35.18 E-value=49 Score=27.76 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=33.9
Q ss_pred hccChhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhh
Q 011735 215 AELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRW 251 (478)
Q Consensus 215 ~~L~~~lf~rvi~am~~~g~~~~~~i~~~l~~Ya~r~ 251 (478)
..||.++.+++-.-.+..|...+++|-++|..|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 6799999999999999999888899999999998876
No 34
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=35.01 E-value=29 Score=27.33 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=15.9
Q ss_pred chHHHHHHHHhhCCCCcH
Q 011735 454 DLYRAIDIYLKVNNELAS 471 (478)
Q Consensus 454 gLYrAIDiYLk~Hp~ls~ 471 (478)
-||.|+.-||+.||+-.+
T Consensus 9 ~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHcCCCchH
Confidence 589999999999998754
No 35
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=33.83 E-value=28 Score=40.64 Aligned_cols=75 Identities=29% Similarity=0.450 Sum_probs=51.4
Q ss_pred cccCCCCCCCccccHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccchhhhhhhhhccCCCCchhhHHHHhhHH
Q 011735 341 LIPCLSYTSDTLYDVDIVMTILEQFKLQGQSPPTSPPRSKLGFERRRSRSAENINFELQESRRSSSASHGSKLKVAKLVD 420 (478)
Q Consensus 341 LIPs~~~~~~tlYDVd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD 420 (478)
+||...++ +.+.++.++++|-..-+ +|
T Consensus 252 iLP~Lt~G-----~~e~m~~Lv~~F~p~l~------------------------------------------------f~ 278 (802)
T PF13764_consen 252 ILPFLTYG-----NEEKMDALVEHFKPYLD------------------------------------------------FD 278 (802)
T ss_pred HhhHHhcC-----CHHHHHHHHHHHHHhcC------------------------------------------------hh
Confidence 68888877 88999999999964321 22
Q ss_pred HHhhhhcCCCCCChhhHHHHHHhcCCcc--c-----cCCCchHH-HHHHHHhh-CCCC
Q 011735 421 GYLQEIAKDVNLPLSKFITIAESVPEFS--R-----LDHDDLYR-AIDIYLKV-NNEL 469 (478)
Q Consensus 421 ~YLaEiA~D~nL~~~KF~~Lae~lPd~a--R-----~~~DgLYr-AIDiYLk~-Hp~l 469 (478)
.|=.+..+|..+.+..|..+++.+|.++ . ..+=|+.. |++ ||+. +|..
T Consensus 279 ~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~-YL~~~~P~~ 335 (802)
T PF13764_consen 279 KFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAID-YLLKHFPSL 335 (802)
T ss_pred hcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHH-HHHHhCccc
Confidence 2223444555777899999999999876 1 23456776 888 5554 4544
No 36
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=32.16 E-value=1.8e+02 Score=28.03 Aligned_cols=93 Identities=19% Similarity=0.158 Sum_probs=64.7
Q ss_pred EEEEEcCEEEEecCcccccCCHHH-HHhhcCCCC----CCCcceeecCCCCCcHHHHHHHHHHHhCCccccccccHHHHH
Q 011735 30 LIIQVKGTRYLLHKFPLLSKCLRL-QRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAAR 104 (478)
Q Consensus 30 V~I~V~g~~F~~HK~vLas~S~yf-r~lf~~~~~----~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~NV~~L~ 104 (478)
|.+.|||..|.--|.-|.--+.-| .++....+. .+. .--.|-|= .|.-|.-|++|.--|++-++.---..++
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDe-tGAYlIDR--DP~~FgpvLNylRhgklvl~~l~eeGvL 99 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDE-TGAYLIDR--DPFYFGPVLNYLRHGKLVLNKLSEEGVL 99 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccc-cCceEecc--CcchHHHHHHHHhcchhhhhhhhhhccc
Confidence 556799999999999999888444 455443321 111 11223222 3689999999999999999986677888
Q ss_pred HhHhhhccchhhccccHHHHHHHHHHH
Q 011735 105 CAAEYLQMTEDVEKGNLIYKIEVFFNS 131 (478)
Q Consensus 105 ~AA~~LqM~e~~~~~nL~~~ce~FL~~ 131 (478)
.-|+|...+. |++...+-+++
T Consensus 100 ~EAefyn~~~------li~likd~i~d 120 (210)
T KOG2715|consen 100 EEAEFYNDPS------LIQLIKDRIQD 120 (210)
T ss_pred hhhhccCChH------HHHHHHHHHHH
Confidence 8999999885 55544444443
No 37
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=30.49 E-value=53 Score=22.72 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=29.1
Q ss_pred ccChhHHHHHHHHHHhCCCCCcchHHHHHHHHHHh
Q 011735 216 ELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASR 250 (478)
Q Consensus 216 ~L~~~lf~rvi~am~~~g~~~~~~i~~~l~~Ya~r 250 (478)
.||.++++++=.-.+..|+..+++|-.+|..|..+
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 47788899988888889987778898888888764
No 38
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=30.14 E-value=31 Score=29.49 Aligned_cols=29 Identities=31% Similarity=0.598 Sum_probs=22.6
Q ss_pred hcCCccccCCCchHHHHHHHHhhCCCCcH
Q 011735 443 SVPEFSRLDHDDLYRAIDIYLKVNNELAS 471 (478)
Q Consensus 443 ~lPd~aR~~~DgLYrAIDiYLk~Hp~ls~ 471 (478)
.+|++.......+|+|+.+||-+....+-
T Consensus 29 ~I~E~~g~~~N~ly~a~~~YL~s~~s~~a 57 (98)
T PF14363_consen 29 VIPEFDGLSRNELYDAAQAYLSSKISPSA 57 (98)
T ss_pred EEEeCCCccccHHHHHHHHHHhhccCccc
Confidence 35555567788999999999999876553
No 39
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=28.89 E-value=40 Score=33.15 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=24.7
Q ss_pred HHhcC--CccccCCCchHHHHHHHHhhCCCCcHH
Q 011735 441 AESVP--EFSRLDHDDLYRAIDIYLKVNNELASI 472 (478)
Q Consensus 441 ae~lP--d~aR~~~DgLYrAIDiYLk~Hp~ls~~ 472 (478)
.+-+| +..+..-+|=|+||.-|||.||+==|.
T Consensus 183 v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEi 216 (237)
T COG3510 183 VNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEI 216 (237)
T ss_pred ccCCCCcccchhcCCChHHHHHHHHHhCCccccc
Confidence 45566 666667999999999999999954333
No 40
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.95 E-value=35 Score=28.41 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=14.1
Q ss_pred CchHHHHHHHHhhCCC
Q 011735 453 DDLYRAIDIYLKVNNE 468 (478)
Q Consensus 453 DgLYrAIDiYLk~Hp~ 468 (478)
=+||-||+-||+.|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999964
No 41
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=22.25 E-value=60 Score=25.82 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=17.5
Q ss_pred CchHHHHHHHHhhCCCCcHHhhc
Q 011735 453 DDLYRAIDIYLKVNNELASIVFK 475 (478)
Q Consensus 453 DgLYrAIDiYLk~Hp~ls~~Er~ 475 (478)
|+.|.| -+.+|-+||++|-.
T Consensus 11 D~fY~~---Li~aH~gLs~e~S~ 30 (60)
T PF10932_consen 11 DDFYEA---LIEAHRGLSDEQSA 30 (60)
T ss_pred hHHHHH---HHHHHhCCCHHHHH
Confidence 999999 58999999998854
Done!