Query 011735
Match_columns 478
No_of_seqs 229 out of 1001
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hve_A Gigaxonin; ubiquitin, c 99.9 1.1E-24 3.7E-29 212.2 6.7 227 20-326 24-256 (256)
2 3i3n_A Kelch-like protein 11; 99.9 3.7E-24 1.3E-28 211.1 8.4 228 20-327 25-264 (279)
3 2vkp_A BTB/POZ domain-containi 99.9 1.4E-22 4.7E-27 172.2 9.3 104 21-133 2-109 (109)
4 2if5_A Zinc finger and BTB dom 99.9 1.9E-22 6.4E-27 174.7 8.3 102 21-130 19-120 (120)
5 3htm_A Speckle-type POZ protei 99.9 2.5E-22 8.7E-27 183.0 9.5 125 18-159 25-149 (172)
6 1r29_A B-cell lymphoma 6 prote 99.9 4E-22 1.4E-26 174.4 9.0 102 21-131 23-125 (127)
7 3b84_A Zinc finger and BTB dom 99.9 1.5E-22 5.1E-27 175.9 6.0 100 21-132 18-117 (119)
8 4eoz_A Speckle-type POZ protei 99.9 7.8E-23 2.7E-27 181.4 4.1 124 19-159 17-140 (145)
9 2z8h_A Transcription regulator 99.9 3.2E-22 1.1E-26 178.1 7.8 107 20-136 29-136 (138)
10 2vpk_A Myoneurin; transcriptio 99.9 4.6E-22 1.6E-26 171.4 8.1 100 20-131 15-116 (116)
11 1buo_A POZ domain, protein (pr 99.9 5.2E-22 1.8E-26 172.7 8.2 100 20-132 21-120 (121)
12 2yy9_A Zinc finger and BTB dom 99.9 2.3E-22 7.7E-27 178.8 5.0 104 20-135 18-121 (135)
13 2ppi_A Gigaxonin; BTB domain, 99.8 7.3E-22 2.5E-26 177.7 7.2 103 20-130 40-144 (144)
14 2q81_A MIZ-1 protein; BTB/POZ 99.8 7.2E-22 2.5E-26 171.5 5.6 98 20-130 20-117 (119)
15 3ga1_A Nucleus accumbens-assoc 99.8 5.3E-22 1.8E-26 174.5 4.2 100 21-132 27-127 (129)
16 3ohu_A Transcription regulator 99.8 3.7E-22 1.2E-26 174.2 3.1 100 20-129 25-125 (125)
17 2ihc_A Transcription regulator 99.8 5.5E-22 1.9E-26 173.5 3.1 101 20-130 22-123 (124)
18 3m5b_A Zinc finger and BTB dom 99.8 2.2E-21 7.4E-26 169.6 6.7 94 21-131 24-117 (119)
19 3hqi_A Speckle-type POZ protei 99.8 3.9E-20 1.3E-24 184.7 8.7 132 21-169 168-302 (312)
20 3fkc_A Transcriptional regulat 99.8 2.4E-19 8.1E-24 155.4 6.5 87 21-114 25-112 (116)
21 2ast_A S-phase kinase-associat 99.5 9.7E-14 3.3E-18 127.1 9.3 97 30-135 3-128 (159)
22 4ajy_C Transcription elongatio 99.3 5E-12 1.7E-16 106.6 7.8 80 30-112 4-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.2 4.2E-11 1.4E-15 107.7 8.1 93 30-135 4-123 (141)
24 2p1m_A SKP1-like protein 1A; F 99.0 4.6E-11 1.6E-15 109.6 1.6 94 30-135 6-127 (160)
25 1hv2_A Elongin C, ELC1; protei 98.5 1.5E-07 5E-12 79.7 6.8 79 30-112 6-99 (99)
26 2fnj_C Transcription elongatio 98.5 1.6E-07 5.4E-12 79.0 6.0 80 30-112 3-96 (96)
27 3v7d_A Suppressor of kinetocho 98.4 5.2E-07 1.8E-11 83.4 8.3 97 29-134 8-134 (169)
28 1vcb_B Protein (elongin C); tu 97.9 6.9E-06 2.3E-10 71.1 4.9 81 29-112 18-112 (112)
29 3drz_A BTB/POZ domain-containi 97.8 8.4E-05 2.9E-09 63.4 8.9 94 29-131 7-106 (107)
30 3drx_A BTB/POZ domain-containi 96.4 0.011 3.7E-07 56.1 9.1 96 29-133 13-114 (202)
31 3kvt_A Potassium channel prote 95.5 0.004 1.4E-07 53.9 1.5 83 30-115 7-92 (115)
32 1s1g_A Potassium voltage-gated 93.5 0.048 1.6E-06 47.7 3.6 81 29-115 14-99 (124)
33 1t1d_A Protein (potassium chan 93.5 0.046 1.6E-06 46.0 3.3 82 30-115 3-89 (100)
34 1nn7_A Potassium channel KV4.2 92.9 0.043 1.5E-06 46.4 2.2 86 30-126 2-92 (105)
35 2nz0_B Potassium voltage-gated 91.7 0.058 2E-06 48.2 1.7 83 27-115 34-121 (140)
36 1pd7_B MAD1; PAH2, SIN3, eukar 70.2 1.3 4.3E-05 28.3 0.6 17 98-114 3-19 (26)
37 2r9r_B Paddle chimera voltage 54.2 9.6 0.00033 40.4 4.3 83 29-115 53-140 (514)
38 1vjh_A BET V I allergen family 53.8 6.9 0.00024 33.3 2.6 33 425-468 90-122 (122)
39 2eqx_A Kelch repeat and BTB do 46.3 15 0.00052 30.1 3.5 35 93-133 6-40 (105)
40 3htm_A Speckle-type POZ protei 26.0 48 0.0016 28.6 3.5 45 80-133 120-164 (172)
41 3lvg_A Clathrin heavy chain 1; 22.7 28 0.00096 37.6 1.5 31 435-470 338-368 (624)
42 2kel_A SVTR protein, uncharact 21.1 75 0.0026 23.5 3.2 36 215-250 18-53 (56)
43 2k9i_A Plasmid PRN1, complete 21.1 79 0.0027 22.2 3.3 37 215-251 14-50 (55)
No 1
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.90 E-value=1.1e-24 Score=212.19 Aligned_cols=227 Identities=13% Similarity=0.114 Sum_probs=151.3
Q ss_pred eecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCC--CCCcceeecCCCCCcHHHHHHHHHHHhCCcccccc
Q 011735 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPE--SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA 97 (478)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~--~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~ 97 (478)
.++.++.+|||+|.|+|++|++||.+|+++|+||++||+.+.. +....+|+|++++ +++|+.+++|+|||++.++.
T Consensus 24 ~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~ 101 (256)
T 3hve_A 24 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNE 101 (256)
T ss_dssp TCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-
T ss_pred HHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCcccH
Confidence 4788999999999999999999999999999999999997643 3334789999997 89999999999999999999
Q ss_pred ccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcchhhHHHHhhcCCcchHHHHHhcc---hhHHHHHHHHhhccC
Q 011735 98 YNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGI---TSRCIEAIASKVLTH 174 (478)
Q Consensus 98 ~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~sw~d~ia~L~~C~~l~~~Ae~~~i---v~rcidsla~ka~~~ 174 (478)
+||..++.||++|||++ |++.|++||.+.+.++ ||..++.+|+.+++ .+.|.+-|+.....
T Consensus 102 ~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l~~~---------n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~- 165 (256)
T 3hve_A 102 DTIQDVVQAADLLLLTD------LKTLCCEFLEGCIAAE---------NCIGIRDFALHYCLHHVHYLATEYLETHFRD- 165 (256)
T ss_dssp CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTCCSS---------TTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHChHH------HHHHHHHHHHhhCCHh---------hHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-
Confidence 99999999999999986 8999999999998664 77778888888763 34555544433210
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCcccccCCCCCchhhhhhccChhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhhcCC
Q 011735 175 PSKVSLSHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPN 254 (478)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~lf~rvi~am~~~g~~~~~~i~~~l~~Ya~r~L~~ 254 (478)
. +-.++...|+.+....++..-.-. +..+..|-.++ .+|+-+
T Consensus 166 -----------------------------v----~~~~~f~~L~~~~l~~lL~~d~L~-v~~E~~v~~av----~~W~~~ 207 (256)
T 3hve_A 166 -----------------------------V----SSTEEFLELSPQKLKEVISLEKLN-VGNERYVFEAV----IRWIAH 207 (256)
T ss_dssp -----------------------------H----TTCHHHHSSCHHHHHHHHHCC--------CTTHHHH----TTTCCC
T ss_pred -----------------------------H----hCCcchhcCCHHHHHHHHccCCCC-CCCHHHHHHHH----HHHHHc
Confidence 0 011678899999999998743221 22333444444 677753
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhhcCC-hhhHHHHHH
Q 011735 255 ISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNAS-SSSKMELAR 326 (478)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llE~iv~lLP~ek~~vsc~fL~~LLr~A~~l~as-~~cr~~LE~ 326 (478)
-.... ...-..|++.| ++ ..+|..||...++.--.+..+ +.||.-|++
T Consensus 208 ~~~~R------------------~~~~~~ll~~V-Rf-----~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~ 256 (256)
T 3hve_A 208 DTEIR------------------KVHMKDVMSAL-WV-----SGLDSSYLREQMLNEPLVREIVKECSNIPLS 256 (256)
T ss_dssp --CCS------------------TTTHHHHHHHH-HH-----HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred CHHHH------------------HHHHHHHHHhC-CC-----CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence 11000 01123556654 22 125556788888777777777 679887764
No 2
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.90 E-value=3.7e-24 Score=211.10 Aligned_cols=228 Identities=13% Similarity=0.136 Sum_probs=163.7
Q ss_pred eecccCCceeEEEEEc---CEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecC------CCCCcHHHHHHHHHHHhC
Q 011735 20 RSISSEVSSDLIIQVK---GTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP------DFPGGIDAFELCAKFCYG 90 (478)
Q Consensus 20 ~~~~~~~lcDV~I~V~---g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~------d~pgg~~~felv~~FcY~ 90 (478)
.++.+|.+|||+|.|+ |++|++||.+|+++|+||++||+++..+....+|+|+ +++ +++|+.+++|+||
T Consensus 25 ~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~--~~~f~~ll~~~Yt 102 (279)
T 3i3n_A 25 EQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPE--PDTVEAVIEYMYT 102 (279)
T ss_dssp HHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSC--HHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCC--HHHHHHHHHhhCc
Confidence 3788899999999998 9999999999999999999999987655544789998 565 8999999999999
Q ss_pred CccccccccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcchhhHHHHhhcCCcchHHHHHhc---chhHHHHHH
Q 011735 91 ITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLG---ITSRCIEAI 167 (478)
Q Consensus 91 ~~i~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~sw~d~ia~L~~C~~l~~~Ae~~~---iv~rcidsl 167 (478)
|++.++.+||..|+.||++|||++ |++.|++||.+.+..+ +|..++.+|+.++ +.+.|.+-|
T Consensus 103 g~~~i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l~~~---------n~~~i~~~A~~~~~~~L~~~~~~~i 167 (279)
T 3i3n_A 103 GRIRVSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKLHLS---------NCVAIHSLAHMYTLSQLALKAADMI 167 (279)
T ss_dssp SEEEEETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHCCTT---------THHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcCCcc---------hHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 999999999999999999999985 9999999999998664 7777888888877 344555555
Q ss_pred HHhhccCCCCCCCccccCCCCCCCCCCCCCCcccccCCCCCchhhhhhccChhHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 011735 168 ASKVLTHPSKVSLSHSYSRRGRDDISCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIY 247 (478)
Q Consensus 168 a~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~lf~rvi~am~~~g~~~~~~i~~~l~~Y 247 (478)
+..... + +-.+++..|+.+....++..-. -.+..+..|-.+++
T Consensus 168 ~~~f~~----v------------------------------~~~~~f~~L~~~~l~~lL~~d~-L~v~sE~~vf~av~-- 210 (279)
T 3i3n_A 168 RRNFHK----V------------------------------IQDEEFYTLPFHLIRDWLSDLE-ITVDSEEVLFETVL-- 210 (279)
T ss_dssp HHTHHH----H------------------------------TTSSGGGGSCHHHHHHHHTCSS-CCCSCHHHHHHHHH--
T ss_pred HHHHHH----H------------------------------hcCcChhcCCHHHHHHHhcCcC-CCCCCHHHHHHHHH--
Confidence 432210 0 0115677899998888876432 12333445555554
Q ss_pred HHhhcCCcccCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 011735 248 ASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARR 327 (478)
Q Consensus 248 a~r~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llE~iv~lLP~ek~~vsc~fL~~LLr~A~~l~as~~cr~~LE~r 327 (478)
+|+-. ...+.+..+..+...+-. ..+|..+|..+++..-.+..++.|+.-|..-
T Consensus 211 --~W~~~----------------------~~~~r~~~~~~ll~~VRf--~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea 264 (279)
T 3i3n_A 211 --KWVQR----------------------NAEERERYFEELFKLLRL--SQMKPTYLTRHVKPERLVANNEVCVKLVADA 264 (279)
T ss_dssp --HHHHT----------------------THHHHTTTHHHHHTTSCG--GGSCHHHHHHTTTTSHHHHTCHHHHHHHHHH
T ss_pred --HHHHc----------------------CHHHHHHHHHHHHHhcCC--CCCCHHHHHHHhhccchhcCCHHHHHHHHHH
Confidence 55532 011112223333333221 4589999999999888899999998877643
No 3
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=172.18 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=92.6
Q ss_pred ecccCCceeEEEEEcC----EEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccc
Q 011735 21 SISSEVSSDLIIQVKG----TRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLS 96 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~g----~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it 96 (478)
++.++.+|||+|.|+| +.|++||.+|+++|+||++||.....+.. .+|.|++++ +++|+.+++|+||+++.++
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~--~~~f~~~l~~iYt~~~~~~ 78 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVE--PAAFLILLKYMYSDEIDLE 78 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSC--HHHHHHHHHHHHHCCCCCC
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCC--HHHHHHHHHHHcCCCccCC
Confidence 5778999999999999 99999999999999999999998765555 789999997 8999999999999999999
Q ss_pred cccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhh
Q 011735 97 AYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (478)
Q Consensus 97 ~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v 133 (478)
.+||..++.+|++|||++ |.+.|++||.+.+
T Consensus 79 ~~~~~~ll~~A~~~~~~~------L~~~c~~~l~~~l 109 (109)
T 2vkp_A 79 ADTVLATLYAAKKYIVPA------LAKACVNFLETSL 109 (109)
T ss_dssp TTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHH------HHHHHHHHHHhhC
Confidence 999999999999999986 9999999998764
No 4
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.87 E-value=1.9e-22 Score=174.69 Aligned_cols=102 Identities=18% Similarity=0.264 Sum_probs=91.8
Q ss_pred ecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccccccH
Q 011735 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNI 100 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~NV 100 (478)
++.++.+|||+|.|+|++|++||.+|+++|+||++||.....+.....|+|++++ +++|+.+++|+|||++.++.+|+
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~ll~~~Yt~~~~~~~~~~ 96 (120)
T 2if5_A 19 QRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVS--AEALTALMDFAYTATLTVSTANV 96 (120)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSC--HHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCC--HHHHHHHHHHHcCCCCccCHHHH
Confidence 6778999999999999999999999999999999999987555444789999987 89999999999999999999999
Q ss_pred HHHHHhHhhhccchhhccccHHHHHHHHHH
Q 011735 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFN 130 (478)
Q Consensus 101 ~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~ 130 (478)
..|+.||++|||++ |++.|++||+
T Consensus 97 ~~ll~~A~~~~i~~------L~~~C~~~L~ 120 (120)
T 2if5_A 97 GDILSAARLLEIPA------VSHVCADLLD 120 (120)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHHHC
T ss_pred HHHHHHHHHhCCHH------HHHHHHHHhC
Confidence 99999999999986 9999999984
No 5
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=183.01 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=111.0
Q ss_pred ceeecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCcccccc
Q 011735 18 AVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA 97 (478)
Q Consensus 18 ~~~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~ 97 (478)
-..++.++.+|||+|.|+|++|++||.+|+++|+||++||.....+....+|.|++++ +++|+.+++|+||+++.++.
T Consensus 25 l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~l~~~Yt~~~~~~~ 102 (172)
T 3htm_A 25 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLD 102 (172)
T ss_dssp HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSC--HHHHHHHHHHHHHSCCTTGG
T ss_pred HHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCC--HHHHHHHHHHHhCCCCCCcH
Confidence 3457788999999999999999999999999999999999987555444799999997 89999999999999999999
Q ss_pred ccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcchhhHHHHhhcCCcchHHHHHhcc
Q 011735 98 YNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGI 159 (478)
Q Consensus 98 ~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~sw~d~ia~L~~C~~l~~~Ae~~~i 159 (478)
+|+..|+.+|++|+|++ |.+.|++||.+.+... +|..++.+|+.+++
T Consensus 103 ~~~~~ll~~A~~~~~~~------l~~~c~~~l~~~l~~~---------n~~~~~~~A~~~~~ 149 (172)
T 3htm_A 103 KMADDLLAAADKYALER------LKVMCEDALCSNLSVE---------NAAEILILADLHSA 149 (172)
T ss_dssp GTHHHHHHHHHHTTCHH------HHHHHHHHHHHTCCTT---------THHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHHHHhCCHH---------HHHHHHHHHHHhCc
Confidence 99999999999999986 9999999999988553 67777777777763
No 6
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.86 E-value=4e-22 Score=174.44 Aligned_cols=102 Identities=22% Similarity=0.372 Sum_probs=95.1
Q ss_pred ecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeec-CCCCCcHHHHHHHHHHHhCCcccccccc
Q 011735 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQL-PDFPGGIDAFELCAKFCYGITITLSAYN 99 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L-~d~pgg~~~felv~~FcY~~~i~it~~N 99 (478)
++.++.+|||+|.|+|++|++||.+|+++|+||++||.....+. ...|+| ++++ +++|+.+++|+|||++.++.+|
T Consensus 23 l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~-~~~i~l~~~~~--~~~f~~ll~~~Ytg~~~~~~~~ 99 (127)
T 1r29_A 23 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN-LSVINLDPEIN--PEGFNILLDFMYTSRLNLREGN 99 (127)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTT-CSEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCC-CCEEEeCCCCC--HHHHHHHHHHHcCCCcCcCHHH
Confidence 67889999999999999999999999999999999999876553 378999 8987 8999999999999999999999
Q ss_pred HHHHHHhHhhhccchhhccccHHHHHHHHHHH
Q 011735 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNS 131 (478)
Q Consensus 100 V~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~ 131 (478)
+..|+.+|++|||++ |++.|++||.+
T Consensus 100 ~~~ll~~A~~~~i~~------L~~~c~~~l~~ 125 (127)
T 1r29_A 100 IMAVMATAMYLQMEH------VVDTCRKFIKA 125 (127)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHH------HHHHHHHHHHh
Confidence 999999999999986 99999999975
No 7
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.86 E-value=1.5e-22 Score=175.88 Aligned_cols=100 Identities=21% Similarity=0.146 Sum_probs=91.5
Q ss_pred ecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccccccH
Q 011735 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNI 100 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~NV 100 (478)
++.++.+|||+|.|+|++|++||.+|+++|+||++||..+. ..+|+|++++ +++|+.+++|+|||++.++.+||
T Consensus 18 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~--~~~f~~ll~~iYtg~~~~~~~~v 91 (119)
T 3b84_A 18 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNR 91 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCC--HHHHHHHHHHHcCCCCccCHHHH
Confidence 67889999999999999999999999999999999999755 2679999987 79999999999999999999999
Q ss_pred HHHHHhHhhhccchhhccccHHHHHHHHHHHh
Q 011735 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFNSC 132 (478)
Q Consensus 101 ~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~ 132 (478)
..|+.||++|||++ |++.|++||.+.
T Consensus 92 ~~ll~~A~~~~i~~------L~~~C~~~l~~~ 117 (119)
T 3b84_A 92 DQVLLAARELRVPE------AVELCQSFKPKT 117 (119)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHCC---
T ss_pred HHHHHHHHHhCcHH------HHHHHHHHHHHc
Confidence 99999999999986 999999999764
No 8
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.86 E-value=7.8e-23 Score=181.43 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=93.6
Q ss_pred eeecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccccc
Q 011735 19 VRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAY 98 (478)
Q Consensus 19 ~~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~ 98 (478)
..++.++.+|||+|.|+|+.|++||.+|+++|+||++||.....+....+|.|++++ +++|+.+++|+||+++.++.+
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~~~~~l~~~Y~~~~~~~~~ 94 (145)
T 4eoz_A 17 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDK 94 (145)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSC--HHHHHHHHHHHHHSCCTTGGG
T ss_pred HHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCC--HHHHHHHHHhhccCccCCcHH
Confidence 347788999999999999999999999999999999999986544433689999997 899999999999999999999
Q ss_pred cHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcchhhHHHHhhcCCcchHHHHHhcc
Q 011735 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGI 159 (478)
Q Consensus 99 NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~sw~d~ia~L~~C~~l~~~Ae~~~i 159 (478)
|+..++.+|++|+|++ |.+.|++||.+.+.. .+|..++.+|+.+++
T Consensus 95 ~~~~ll~~A~~~~~~~------l~~~c~~~l~~~l~~---------~n~~~~l~~A~~~~~ 140 (145)
T 4eoz_A 95 MADDLLAAADKYALER------LKVMCEDALCSNLSV---------ENAAEILILADLHSA 140 (145)
T ss_dssp THHHHHHHHHHTTCHH------HHHHHHCC-------------------------------
T ss_pred HHHHHHHHHHHhCHHH------HHHHHHHHHHHhCCH---------HHHHHHHHHHHHhCH
Confidence 9999999999999986 999999999998854 488888888888875
No 9
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.86 E-value=3.2e-22 Score=178.06 Aligned_cols=107 Identities=20% Similarity=0.291 Sum_probs=97.5
Q ss_pred eecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecC-CCCCcHHHHHHHHHHHhCCccccccc
Q 011735 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP-DFPGGIDAFELCAKFCYGITITLSAY 98 (478)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~-d~pgg~~~felv~~FcY~~~i~it~~ 98 (478)
.++.++.+|||+|.|+|++|++||.+|+++|+||++||.....+. ..|.|+ +++ +++|+.+++|+|||++.++.+
T Consensus 29 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~--~~~~~~lL~~~Ytg~~~i~~~ 104 (138)
T 2z8h_A 29 DQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVT--VKGFEPLIQFAYTAKLILSKD 104 (138)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSC--HHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCC--HHHHHHHHHHhcCCCcccCHH
Confidence 477889999999999999999999999999999999999865442 578995 887 799999999999999999999
Q ss_pred cHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcc
Q 011735 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHG 136 (478)
Q Consensus 99 NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~s 136 (478)
||..|+.||++|||++ |++.|++||.+.+..+
T Consensus 105 ~v~~ll~~A~~~~i~~------L~~~C~~~l~~~l~~s 136 (138)
T 2z8h_A 105 NVDEVCRCVEFLSVHN------IEESCFQFLKFKFLDS 136 (138)
T ss_dssp THHHHHHHHHHHTCGG------GHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHHHHhCCHH------HHHHHHHHHHHhcccc
Confidence 9999999999999986 9999999999887654
No 10
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.86 E-value=4.6e-22 Score=171.44 Aligned_cols=100 Identities=20% Similarity=0.291 Sum_probs=91.1
Q ss_pred eecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecC--CCCCcHHHHHHHHHHHhCCcccccc
Q 011735 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP--DFPGGIDAFELCAKFCYGITITLSA 97 (478)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~--d~pgg~~~felv~~FcY~~~i~it~ 97 (478)
.++.++.+|||+|.|+|++|++||.+|+++|+||++||.... . ..|.|+ +++ +++|+.+++|+|||++.++.
T Consensus 15 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~---~-~~i~l~~~~~~--~~~f~~ll~~~Yt~~~~~~~ 88 (116)
T 2vpk_A 15 KQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTS---E-NNVFLDQSQVK--ADGFQKLLEFIYTGTLNLDS 88 (116)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCC---C-SCEECCTTTCC--HHHHHHHHHHHHHSCCCCCT
T ss_pred HHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCCC---C-CeEEeecCCCC--HHHHHHHHHHHcCCCcccCH
Confidence 367889999999999999999999999999999999999762 2 567777 887 89999999999999999999
Q ss_pred ccHHHHHHhHhhhccchhhccccHHHHHHHHHHH
Q 011735 98 YNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNS 131 (478)
Q Consensus 98 ~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~ 131 (478)
+||..++.||++|||++ |++.|++||.+
T Consensus 89 ~~v~~ll~~A~~~~i~~------L~~~C~~~l~~ 116 (116)
T 2vpk_A 89 WNVKEIHQAADYLKVEE------VVTKCKIKMED 116 (116)
T ss_dssp TTHHHHHHHHHHTTCHH------HHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhCCHH------HHHHHHHHHhC
Confidence 99999999999999985 99999999863
No 11
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.86 E-value=5.2e-22 Score=172.71 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=93.3
Q ss_pred eecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCcccccccc
Q 011735 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYN 99 (478)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~N 99 (478)
.++.++.+|||+|.|+|++|++||.+|+++|+||++||.++ ..+|+|++++ +++|+.+++|+|||++.++.+|
T Consensus 21 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~--~~~f~~ll~~~Ytg~~~~~~~~ 93 (121)
T 1buo_A 21 QMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLS--PKTFQQILEYAYTATLQAKAED 93 (121)
T ss_dssp HHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGG
T ss_pred HHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCC--HHHHHHHHHhhcCCCcCCCHHH
Confidence 37788999999999999999999999999999999999863 2589999998 8999999999999999999999
Q ss_pred HHHHHHhHhhhccchhhccccHHHHHHHHHHHh
Q 011735 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSC 132 (478)
Q Consensus 100 V~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~ 132 (478)
+..++.||++|||++ |.+.|++||.+.
T Consensus 94 ~~~ll~~A~~~~i~~------L~~~c~~~l~~~ 120 (121)
T 1buo_A 94 LDDLLYAAEILEIEY------LEEQCLKMLETI 120 (121)
T ss_dssp HHHHHHHHHHHTCHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHH------HHHHHHHHHHHh
Confidence 999999999999986 999999999875
No 12
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.85 E-value=2.3e-22 Score=178.78 Aligned_cols=104 Identities=20% Similarity=0.161 Sum_probs=91.0
Q ss_pred eecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCcccccccc
Q 011735 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYN 99 (478)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~N 99 (478)
.++.++.+|||+|.|+|++|++||.+|+++|+||++||.... ..+|+|++++ +++|+.+++|+||+++.++.+|
T Consensus 18 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~--~~~f~~lL~fiYtg~~~i~~~~ 91 (135)
T 2yy9_A 18 KQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGN 91 (135)
T ss_dssp HHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGG--HHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCC--HHHHHHHHHHHhCCCCCCCHHH
Confidence 378899999999999999999999999999999999999755 2579999987 7999999999999999999999
Q ss_pred HHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhc
Q 011735 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILH 135 (478)
Q Consensus 100 V~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~ 135 (478)
|..|+.||++|||++ |++.|++||.+.+..
T Consensus 92 v~~ll~~A~~l~i~~------L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 92 RDQVLLAAKELRVPE------AVELCQSFQPQTSVG 121 (135)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCcHH------HHHHHHHHHHHhccC
Confidence 999999999999986 999999999987743
No 13
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.85 E-value=7.3e-22 Score=177.66 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=90.5
Q ss_pred eecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCC--CCcceeecCCCCCcHHHHHHHHHHHhCCcccccc
Q 011735 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPES--SQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA 97 (478)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~--~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~ 97 (478)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.....+ ....+|.|++++ +++|+.+++|+|||++.++.
T Consensus 40 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~--~~~f~~lL~fiYtg~~~i~~ 117 (144)
T 2ppi_A 40 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNE 117 (144)
T ss_dssp HTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSC--HHHHHHHHHHHTTSCCCCCT
T ss_pred HHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCC--HHHHHHHHHHHhCCCCCCCH
Confidence 37788999999999999999999999999999999999875432 233689999998 89999999999999999999
Q ss_pred ccHHHHHHhHhhhccchhhccccHHHHHHHHHH
Q 011735 98 YNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFN 130 (478)
Q Consensus 98 ~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~ 130 (478)
+||..|+.||++|||++ |++.|++||+
T Consensus 118 ~~v~~ll~~A~~l~i~~------L~~~C~~~L~ 144 (144)
T 2ppi_A 118 DTIQDVVQAADLLLLTD------LKTLCCEFLE 144 (144)
T ss_dssp TTHHHHHHHHHHTTCHH------HHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHhC
Confidence 99999999999999986 9999999974
No 14
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.84 E-value=7.2e-22 Score=171.54 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=90.5
Q ss_pred eecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCcccccccc
Q 011735 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYN 99 (478)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~N 99 (478)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||++. ...|.|++++ +++|+.+++|+|||++.++.+|
T Consensus 20 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~--~~~f~~ll~~~Ytg~~~i~~~~ 92 (119)
T 2q81_A 20 QQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISN--AAGLGQVLEFMYTAKLSLSPEN 92 (119)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCC--HHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCC--HHHHHHHHHHHcCCCCccCHHH
Confidence 36778999999999999999999999999999999999863 1468888886 7999999999999999999999
Q ss_pred HHHHHHhHhhhccchhhccccHHHHHHHHHH
Q 011735 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFN 130 (478)
Q Consensus 100 V~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~ 130 (478)
|..|+.+|++|||++ |++.|++||.
T Consensus 93 ~~~ll~~A~~l~i~~------L~~~C~~~l~ 117 (119)
T 2q81_A 93 VDDVLAVATFLQMQD------IITACHALKS 117 (119)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHH------HHHHHHHHHh
Confidence 999999999999986 9999999985
No 15
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.84 E-value=5.3e-22 Score=174.51 Aligned_cols=100 Identities=22% Similarity=0.340 Sum_probs=85.9
Q ss_pred ecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecC-CCCCcHHHHHHHHHHHhCCcccccccc
Q 011735 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP-DFPGGIDAFELCAKFCYGITITLSAYN 99 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~-d~pgg~~~felv~~FcY~~~i~it~~N 99 (478)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||... . ..+|+|+ +++ +++|+.+++|+|||++.++.+|
T Consensus 27 l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---~-~~~i~l~~~~~--~~~f~~ll~~iYtg~~~i~~~~ 100 (129)
T 3ga1_A 27 QRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---R-SAVVELPAAVQ--PQSFQQILSFCYTGRLSMNVGD 100 (129)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC---C-CSEEECCTTCC--HHHHHHHHHHHHHSEEECCTTT
T ss_pred HHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC---C-CCEEEECCCCC--HHHHHHHHHHHhCCccccCHHH
Confidence 6778999999999999999999999999999999999976 2 2689997 888 8999999999999999999999
Q ss_pred HHHHHHhHhhhccchhhccccHHHHHHHHHHHh
Q 011735 100 IVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSC 132 (478)
Q Consensus 100 V~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~ 132 (478)
|..|+.||++|||++ |++.|++||.+.
T Consensus 101 ~~~ll~~A~~~~i~~------l~~~C~~~L~~~ 127 (129)
T 3ga1_A 101 QDLLMYTAGFLQIQE------IMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHHTTBTT------SSCC--------
T ss_pred HHHHHHHHHHhCCHH------HHHHHHHHHHHh
Confidence 999999999999986 889999999875
No 16
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.84 E-value=3.7e-22 Score=174.24 Aligned_cols=100 Identities=20% Similarity=0.265 Sum_probs=91.3
Q ss_pred eecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCC-CCCcHHHHHHHHHHHhCCccccccc
Q 011735 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPD-FPGGIDAFELCAKFCYGITITLSAY 98 (478)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d-~pgg~~~felv~~FcY~~~i~it~~ 98 (478)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.....+ ...|.|++ ++ +++|+.+++|+|||++.++.+
T Consensus 25 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~--~~~f~~~l~~iYtg~~~~~~~ 100 (125)
T 3ohu_A 25 DQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVT--ARGFGPLLQFAYTAKLLLSRE 100 (125)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCC--HHHHHHHHHHHTTSEEEECTT
T ss_pred HHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCC--HHHHHHHHHhHcCCceEECHH
Confidence 36788999999999999999999999999999999999986554 26899998 87 899999999999999999999
Q ss_pred cHHHHHHhHhhhccchhhccccHHHHHHHHH
Q 011735 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFF 129 (478)
Q Consensus 99 NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL 129 (478)
||..|+.||++|||++ |++.|++||
T Consensus 101 ~v~~ll~~A~~l~i~~------L~~~C~~~L 125 (125)
T 3ohu_A 101 NIREVIRCAEFLRMHN------LEDSCFSFL 125 (125)
T ss_dssp THHHHHHHHHHHTBSS------CTTSSCCCC
T ss_pred HHHHHHHHHHHhCCHH------HHHHHHHhC
Confidence 9999999999999986 788888775
No 17
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.84 E-value=5.5e-22 Score=173.50 Aligned_cols=101 Identities=20% Similarity=0.295 Sum_probs=90.2
Q ss_pred eecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecC-CCCCcHHHHHHHHHHHhCCccccccc
Q 011735 20 RSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLP-DFPGGIDAFELCAKFCYGITITLSAY 98 (478)
Q Consensus 20 ~~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~-d~pgg~~~felv~~FcY~~~i~it~~ 98 (478)
.++.++.+|||+|.|+|++|++||.+|+++|+||++||++...+. ..|.|+ +++ +++|+.+++|+|||++.++.+
T Consensus 22 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~--~~~f~~lL~~iYtg~~~i~~~ 97 (124)
T 2ihc_A 22 DQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVT--VKGFEPLIQFAYTAKLILSKE 97 (124)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSC--HHHHHHHHHHHHHSEEEEETT
T ss_pred HHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcC--HHHHHHHHHHhcCCCcccCHH
Confidence 477889999999999999999999999999999999999865432 578894 887 899999999999999999999
Q ss_pred cHHHHHHhHhhhccchhhccccHHHHHHHHHH
Q 011735 99 NIVAARCAAEYLQMTEDVEKGNLIYKIEVFFN 130 (478)
Q Consensus 99 NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~ 130 (478)
||..|+.||++|||++ |++.|++||.
T Consensus 98 ~v~~ll~~A~~~~~~~------L~~~C~~~l~ 123 (124)
T 2ihc_A 98 NVDEVCKCVEFLSVHN------IEESCFQFLK 123 (124)
T ss_dssp THHHHHHHHHHHTBSS------CCGGGGGTC-
T ss_pred HHHHHHHHHHHHCCHH------HHHHHHHHHh
Confidence 9999999999999986 8889999875
No 18
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.83 E-value=2.2e-21 Score=169.61 Aligned_cols=94 Identities=18% Similarity=0.136 Sum_probs=85.8
Q ss_pred ecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccccccH
Q 011735 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNI 100 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~NV 100 (478)
.|.++.+|||+|.|+|++|++||.+||++|+||++ . ...|+|++++ +++|+.+++|+|||++.++.+||
T Consensus 24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~--------~-~~~i~l~~v~--~~~f~~ll~fiYtg~~~i~~~~v 92 (119)
T 3m5b_A 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR--------R-GQWALGEGIS--PSTFAQLLNFVYGESVELQPGEL 92 (119)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC--------C-EEEECCSSCC--HHHHHHHHHHHTTCCEEECGGGH
T ss_pred HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc--------C-CCEEEeCCCC--HHHHHHHHHHHcCCCcCcCHHHH
Confidence 46789999999999999999999999999999985 1 2689999998 89999999999999999999999
Q ss_pred HHHHHhHhhhccchhhccccHHHHHHHHHHH
Q 011735 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFNS 131 (478)
Q Consensus 101 ~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~ 131 (478)
..|+.||++|||+. |++.|++++.+
T Consensus 93 ~~ll~aA~~l~i~~------l~~~C~~~~~~ 117 (119)
T 3m5b_A 93 RPLQEAARALGVQS------LEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHHC--
T ss_pred HHHHHHHHHhCCHH------HHHHHHHHHhh
Confidence 99999999999985 99999999876
No 19
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.80 E-value=3.9e-20 Score=184.70 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=111.7
Q ss_pred ecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCccccccccH
Q 011735 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNI 100 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~~NV 100 (478)
++.++.+|||+|.|+|++|++||.+||++|+||++||...+.+....+|+|++++ +++|+.+++|+||+++.++..|+
T Consensus 168 l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~L~~iYt~~~~~~~~~~ 245 (312)
T 3hqi_A 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMA 245 (312)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSC--HHHHHHHHHHHHHSCCTTHHHHH
T ss_pred HHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCC--HHHHHHHHHhhcCCCCCChHHHH
Confidence 5567899999999999999999999999999999999987555444799999998 89999999999999999999999
Q ss_pred HHHHHhHhhhccchhhccccHHHHHHHHHHHhhhcchhhHHHHhhcCCcchHHHHHhc---chhHHHHHHHH
Q 011735 101 VAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLG---ITSRCIEAIAS 169 (478)
Q Consensus 101 ~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~sw~d~ia~L~~C~~l~~~Ae~~~---iv~rcidsla~ 169 (478)
..|+.||++|+|+. |+..|++||.+.+.. .+|..++.+|+.++ +.++|++-|+.
T Consensus 246 ~~ll~~A~~~~~~~------l~~~c~~~l~~~~~~---------~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 302 (312)
T 3hqi_A 246 DDLLAAADKYALER------LKVMCEDALCSNLSV---------ENAAEILILADLHSADQLKTQAVDFINY 302 (312)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHHHHTTCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHH------HHHHHHHHHHccCCH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999985 999999999988754 36677777777774 45566666654
No 20
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.77 E-value=2.4e-19 Score=155.44 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=81.8
Q ss_pred ecccCCceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCcc-cccccc
Q 011735 21 SISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITI-TLSAYN 99 (478)
Q Consensus 21 ~~~~~~lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i-~it~~N 99 (478)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||... ..+|+|++++ +++|+.+++|+|||++ .++.+|
T Consensus 25 ~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~--~~~f~~~l~~~Ytg~~~~~~~~~ 97 (116)
T 3fkc_A 25 QRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIR--AEIFAEILNYIYSSKIVRVRSDL 97 (116)
T ss_dssp HHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSC--HHHHHHHHHHHTTSCCCSCCHHH
T ss_pred HHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCC--HHHHHHHHHhhcCCCcCCCCHHH
Confidence 6788999999999999999999999999999999999875 2589999998 8999999999999999 799999
Q ss_pred HHHHHHhHhhhccch
Q 011735 100 IVAARCAAEYLQMTE 114 (478)
Q Consensus 100 V~~L~~AA~~LqM~e 114 (478)
|..++.||++|||+.
T Consensus 98 ~~~ll~~A~~l~i~~ 112 (116)
T 3fkc_A 98 LDELIKSGQLLGVKF 112 (116)
T ss_dssp HHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCccc
Confidence 999999999999975
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.47 E-value=9.7e-14 Score=127.10 Aligned_cols=97 Identities=12% Similarity=0.200 Sum_probs=83.5
Q ss_pred EEEEE-cCEEEEecCcccccCCHHHHHhhcC-CCC-CCCcceeecCCCCCcHHHHHHHHHHHhCCc--------------
Q 011735 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSE-SPE-SSQHQIVQLPDFPGGIDAFELCAKFCYGIT-------------- 92 (478)
Q Consensus 30 V~I~V-~g~~F~~HK~vLas~S~yfr~lf~~-~~~-~~~~~~v~L~d~pgg~~~felv~~FcY~~~-------------- 92 (478)
|+|+. +|+.|.+||.+ |++|+||++||.. +.. +.....|.|++++ +.+++.|++|||..+
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~--~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSC--HHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCcc--HHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 67764 89999999999 9999999999997 433 3333689999998 699999999999887
Q ss_pred ------------cccccccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhc
Q 011735 93 ------------ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILH 135 (478)
Q Consensus 93 ------------i~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~ 135 (478)
+.++..|+..|+.||+||||.. |++.|+.|+..++..
T Consensus 80 ~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~------Lld~~c~~va~~i~g 128 (159)
T 2ast_A 80 RTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG------LLDVTCKTVANMIKG 128 (159)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHSS
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHcC
Confidence 8999999999999999999985 999999999998854
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.29 E-value=5e-12 Score=106.58 Aligned_cols=80 Identities=10% Similarity=0.167 Sum_probs=65.6
Q ss_pred EEEEE-cCEEEEecCcccccCCHHHHHhhcC--CCCCCCcceeecCCCCCcHHHHHHHHHHHh-----C---Cccc---c
Q 011735 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSE--SPESSQHQIVQLPDFPGGIDAFELCAKFCY-----G---ITIT---L 95 (478)
Q Consensus 30 V~I~V-~g~~F~~HK~vLas~S~yfr~lf~~--~~~~~~~~~v~L~d~pgg~~~felv~~FcY-----~---~~i~---i 95 (478)
|+++- +|++|.+||.+ |++|+||++||+. ...++....|.|++++ +.+++.|++||| + +.|. |
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~--~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSC--HHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCC--HHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 44543 78999999999 9999999999997 2233333689999998 699999999999 5 6787 9
Q ss_pred ccccHHHHHHhHhhhcc
Q 011735 96 SAYNIVAARCAAEYLQM 112 (478)
Q Consensus 96 t~~NV~~L~~AA~~LqM 112 (478)
+++|+..|+.||+||+.
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 99999999999999983
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.17 E-value=4.2e-11 Score=107.67 Aligned_cols=93 Identities=13% Similarity=0.183 Sum_probs=82.0
Q ss_pred EEEEE-cCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCc----------------
Q 011735 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGIT---------------- 92 (478)
Q Consensus 30 V~I~V-~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~---------------- 92 (478)
|+|+. +|+.|.+|+.+ |..|+||+.||.... . ..|.|++++ +.+++.|++|||..+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~-~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG---M-DPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC---C-SSEECTTCC--HHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC---C-CceecCCcC--HHHHHHHHHHHHHhccCCCccccccccccch
Confidence 66776 88999999998 899999999998632 2 579999998 699999999999755
Q ss_pred ----------cccccccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhc
Q 011735 93 ----------ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILH 135 (478)
Q Consensus 93 ----------i~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~ 135 (478)
+.++..++..|+.||+||+|.. |++.|++|+...+-.
T Consensus 77 ~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~------Lldl~c~~vA~~ikg 123 (141)
T 1fs1_B 77 DDIPVWDQEFLKVDQGTLFELILAANYLDIKG------LLDVTCKTVANMIKG 123 (141)
T ss_dssp ----HHHHHHTCSCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHcC
Confidence 7899999999999999999985 999999999998843
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.02 E-value=4.6e-11 Score=109.58 Aligned_cols=94 Identities=12% Similarity=0.215 Sum_probs=52.1
Q ss_pred EEEEE-cCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCc----------------
Q 011735 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGIT---------------- 92 (478)
Q Consensus 30 V~I~V-~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~---------------- 92 (478)
|+|+. +|+.|.+|+.+ |..|+||+.||..... . ..|.|++|+ +.+++.|++|||..+
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~--~-~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDCV--D-NGVPLPNVT--SKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCTTSC--HHHHHHHHHC---------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccCC--C-CceeCCcCc--HHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 66664 89999999998 8999999999986432 2 479999998 699999999999865
Q ss_pred -----------cccccccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhhc
Q 011735 93 -----------ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILH 135 (478)
Q Consensus 93 -----------i~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~~ 135 (478)
+.++..++..|+.||+||+|.. |++.|+.|+...+-.
T Consensus 80 ~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~------Lldl~c~~vA~~ikg 127 (160)
T 2p1m_A 80 DDDLKAWDADFMKIDQATLFELILAANYLNIKN------LLDLTCQTVADMIKG 127 (160)
T ss_dssp ---------------------CHHHHHHTTCHH------HHHHHHHHHHHTTTT
T ss_pred cchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHcC
Confidence 5789999999999999999985 999999999998844
No 25
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.52 E-value=1.5e-07 Score=79.71 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=66.2
Q ss_pred EEEEE-cCEEEEecCcccccCCHHHHHhhcCCCCCCCcceeecCCCCCcHHHHHHHHHHHhCCc--------------cc
Q 011735 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGIT--------------IT 94 (478)
Q Consensus 30 V~I~V-~g~~F~~HK~vLas~S~yfr~lf~~~~~~~~~~~v~L~d~pgg~~~felv~~FcY~~~--------------i~ 94 (478)
|++.- +|+.|.+|+.+ |..|++++.|+..+.+.. ...|.|++++ +.+++.|++|||.-+ ..
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~-~~~Iplp~V~--~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~ 81 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRES-KGRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFE 81 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTC-TTEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccC-CCceecCCcC--HHHHHHHHHHHHHhcccCCCccccccCCCcc
Confidence 66766 89999999997 899999999998744222 2589999998 699999999999532 36
Q ss_pred cccccHHHHHHhHhhhcc
Q 011735 95 LSAYNIVAARCAAEYLQM 112 (478)
Q Consensus 95 it~~NV~~L~~AA~~LqM 112 (478)
+...++..|+.||+||++
T Consensus 82 vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 82 IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 788899999999999986
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.48 E-value=1.6e-07 Score=79.03 Aligned_cols=80 Identities=9% Similarity=0.153 Sum_probs=64.2
Q ss_pred EEEEE-cCEEEEecCcccccCCHHHHHhhcCC-C-CCCCcceeecCCCCCcHHHHHHHHHHHhCCc-----------ccc
Q 011735 30 LIIQV-KGTRYLLHKFPLLSKCLRLQRLCSES-P-ESSQHQIVQLPDFPGGIDAFELCAKFCYGIT-----------ITL 95 (478)
Q Consensus 30 V~I~V-~g~~F~~HK~vLas~S~yfr~lf~~~-~-~~~~~~~v~L~d~pgg~~~felv~~FcY~~~-----------i~i 95 (478)
|+++- +|+.|.+|+.+ |..|++++.|+... . .+.....|.|++++ +.+++.|++|||.-+ ..+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCC--HHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 55665 89999999996 89999999999863 2 23223589999998 699999999999532 368
Q ss_pred ccccHHHHHHhHhhhcc
Q 011735 96 SAYNIVAARCAAEYLQM 112 (478)
Q Consensus 96 t~~NV~~L~~AA~~LqM 112 (478)
..+++..|+.||+||++
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88999999999999986
No 27
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.41 E-value=5.2e-07 Score=83.44 Aligned_cols=97 Identities=12% Similarity=0.212 Sum_probs=77.3
Q ss_pred eEEEEE-cCEEEEecCcccccCCHHHHHhhcCCCC----CCCcceeecCCCCCcHHHHHHHHHHHhCCc-----------
Q 011735 29 DLIIQV-KGTRYLLHKFPLLSKCLRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGIT----------- 92 (478)
Q Consensus 29 DV~I~V-~g~~F~~HK~vLas~S~yfr~lf~~~~~----~~~~~~v~L~d~pgg~~~felv~~FcY~~~----------- 92 (478)
-|+|+- +|+.|.+++.+ |..|++++.|+..... +.....|.|++|+ +.+++.|++|||-.+
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVR--SSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCC--HHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCC--HHHHHHHHHHHHHcccCCCccccccc
Confidence 456654 78899999997 8889999999986432 1222579999998 699999999999532
Q ss_pred --------------cccccccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhhh
Q 011735 93 --------------ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCIL 134 (478)
Q Consensus 93 --------------i~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v~ 134 (478)
+.+....+..|+.||.||+|.. |++.||.++...+-
T Consensus 85 ~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~------Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKP------LLDAGCKVVAEMIR 134 (169)
T ss_dssp ---CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHHc
Confidence 4577789999999999999985 99999999988773
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.95 E-value=6.9e-06 Score=71.05 Aligned_cols=81 Identities=9% Similarity=0.130 Sum_probs=63.8
Q ss_pred eEEEE-EcCEEEEecCcccccCCHHHHHhhcCCC--CCCCcceeecCCCCCcHHHHHHHHHHHhCCc-----------cc
Q 011735 29 DLIIQ-VKGTRYLLHKFPLLSKCLRLQRLCSESP--ESSQHQIVQLPDFPGGIDAFELCAKFCYGIT-----------IT 94 (478)
Q Consensus 29 DV~I~-V~g~~F~~HK~vLas~S~yfr~lf~~~~--~~~~~~~v~L~d~pgg~~~felv~~FcY~~~-----------i~ 94 (478)
-|+|+ -+|+.|.+++. .|..|+.++.|+.... .+.....|.|++|+ +.+++.|++|||--+ ..
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCCCC--HHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 35666 58999999999 5789999999998632 22222579999998 699999999998422 36
Q ss_pred cccccHHHHHHhHhhhcc
Q 011735 95 LSAYNIVAARCAAEYLQM 112 (478)
Q Consensus 95 it~~NV~~L~~AA~~LqM 112 (478)
+...++..|+.||+||++
T Consensus 95 vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 IAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 788999999999999986
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.78 E-value=8.4e-05 Score=63.37 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=72.5
Q ss_pred eEEEEEcCEEEEecCcccccCC-HHHHHhhcCCCC----CCCcceeecCCCCCcHHHHHHHHHHHhCCcccccc-ccHHH
Q 011735 29 DLIIQVKGTRYLLHKFPLLSKC-LRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIVA 102 (478)
Q Consensus 29 DV~I~V~g~~F~~HK~vLas~S-~yfr~lf~~~~~----~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~-~NV~~ 102 (478)
=|+|.|||+.|...+..|.... .+|.+||..... .+...++-+ |- .|..|+.|++|..+|++.+.. -++..
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DR--dp~~F~~IL~~lr~g~l~~p~~~~~~~ 83 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DR--DPTYFGPVLNYLRHGKLVINKDLAEEG 83 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CS--CHHHHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cC--ChHHHHHHHHHhCCCeeCCCCCCCHHH
Confidence 4789999999999999999885 578999875311 112234554 33 379999999999999998744 34678
Q ss_pred HHHhHhhhccchhhccccHHHHHHHHHHH
Q 011735 103 ARCAAEYLQMTEDVEKGNLIYKIEVFFNS 131 (478)
Q Consensus 103 L~~AA~~LqM~e~~~~~nL~~~ce~FL~~ 131 (478)
++..|+|+++++ |++.|++-+.+
T Consensus 84 l~~Ea~fy~l~~------L~~~l~~~i~~ 106 (107)
T 3drz_A 84 VLEEAEFYNITS------LIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHTCHH------HHHHHHHHHHH
T ss_pred HHHHHHHCCCHH------HHHHHHHHHhc
Confidence 999999999986 88888876543
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=96.41 E-value=0.011 Score=56.09 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=72.7
Q ss_pred eEEEEEcCEEEEecCcccccCC-HHHHHhhcCCCC----CCCcceeecCCCCCcHHHHHHHHHHHhCCcccccc-ccHHH
Q 011735 29 DLIIQVKGTRYLLHKFPLLSKC-LRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIVA 102 (478)
Q Consensus 29 DV~I~V~g~~F~~HK~vLas~S-~yfr~lf~~~~~----~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~-~NV~~ 102 (478)
=|+|.|||+.|...+..|.... .+|.+||..... .+...++-|. - .|..|+.|++|.-+|++.+.. -.+..
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFID-R--DP~~F~~ILnyLRtG~L~lP~~~~~~~ 89 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID-R--DPTYFGPVLNYLRHGKLVINKDLAEEG 89 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEEC-S--CSTTHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEec-C--ChHHHHHHHHHhcCCccCCCCCCCHHH
Confidence 4678999999999999998774 488999875311 1112355553 2 358999999999999998744 34578
Q ss_pred HHHhHhhhccchhhccccHHHHHHHHHHHhh
Q 011735 103 ARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (478)
Q Consensus 103 L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v 133 (478)
++.-|+|+++++ |++.|.+-+.+.-
T Consensus 90 l~eEA~FygL~~------Lv~~l~~~i~ere 114 (202)
T 3drx_A 90 VLEEAEFYNITS------LIKLVKDKIRERD 114 (202)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHH------HHHHHHHHHHHHh
Confidence 999999999986 8888888876543
No 31
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.49 E-value=0.004 Score=53.85 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=61.9
Q ss_pred EEEEEcCEEEEecCcccccCC-HHHHHhhcCCC-CCCCcceeecCCCCCcHHHHHHHHHHHhCCcccccc-ccHHHHHHh
Q 011735 30 LIIQVKGTRYLLHKFPLLSKC-LRLQRLCSESP-ESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIVAARCA 106 (478)
Q Consensus 30 V~I~V~g~~F~~HK~vLas~S-~yfr~lf~~~~-~~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~-~NV~~L~~A 106 (478)
|+|.|||+.|...+..|.... ..|.+|+.... -.....++-+. = .|..|..|++|.-+|++.+.. -.+..++.-
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD-R--dp~~F~~ILnylR~G~l~~p~~~~~~~~~~E 83 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD-R--HPGVFAQIINYYRSGKLHYPTDVCGPLFEEE 83 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC-S--CTTTHHHHHHHHHHSCBCCCSSSCHHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe-c--ChHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Confidence 789999999999999998763 34566766421 01112456553 2 358999999999999998755 367899999
Q ss_pred Hhhhccchh
Q 011735 107 AEYLQMTED 115 (478)
Q Consensus 107 A~~LqM~e~ 115 (478)
|+|+++++.
T Consensus 84 a~fy~i~~~ 92 (115)
T 3kvt_A 84 LEFWGLDSN 92 (115)
T ss_dssp HHHHTCCGG
T ss_pred HHHhCCChH
Confidence 999999974
No 32
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=93.52 E-value=0.048 Score=47.65 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=57.2
Q ss_pred eEEEEEcCEEEEecCcccccCCHHHHHhhcCCCC----CCCcceeecCCCCCcHHHHHHHHHHHhCCcccccc-ccHHHH
Q 011735 29 DLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIVAA 103 (478)
Q Consensus 29 DV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~----~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~-~NV~~L 103 (478)
=|+|.|||+.|..-+..|...-+ .|+..... .....++-|. -.|..|+.|++|.-+|++.+.. ..+..+
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnflR~G~l~~p~~~~~~~l 87 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLHYPRYECISAY 87 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEEC---SCHHHHHHHHHHHHHSCBCCCTTSCHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEEc---CChHHHHHHHHHHhcCCCCCCCCcCHHHH
Confidence 47889999999999888865432 12322100 0111345542 3479999999999999998654 357999
Q ss_pred HHhHhhhccchh
Q 011735 104 RCAAEYLQMTED 115 (478)
Q Consensus 104 ~~AA~~LqM~e~ 115 (478)
+.-|+|+++++.
T Consensus 88 ~~Ea~fy~i~~l 99 (124)
T 1s1g_A 88 DDELAFYGILPE 99 (124)
T ss_dssp HHHHHHTTCCGG
T ss_pred HHHHHHcCCChH
Confidence 999999999873
No 33
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=93.48 E-value=0.046 Score=46.03 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=58.0
Q ss_pred EEEEEcCEEEEecCcccccCC-HHHHHhhcCC--CCCCCcceeecCCCCCcHHHHHHHHHHHhC-Ccccccc-ccHHHHH
Q 011735 30 LIIQVKGTRYLLHKFPLLSKC-LRLQRLCSES--PESSQHQIVQLPDFPGGIDAFELCAKFCYG-ITITLSA-YNIVAAR 104 (478)
Q Consensus 30 V~I~V~g~~F~~HK~vLas~S-~yfr~lf~~~--~~~~~~~~v~L~d~pgg~~~felv~~FcY~-~~i~it~-~NV~~L~ 104 (478)
|+|.|||+.|...+..|...- ..+.+|+... -.... .++-+. -.|..|+.|++|.-+ |++.+.+ -.+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~-~eyFiD---Rdp~~F~~ILnflR~~G~l~~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLR-NEYFFD---RNRPSFDAILYFYQSGGRLRRPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTT-TEEEEC---SCSTTHHHHHHHHHTTSCCCCCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCc-eeEEEc---CChHHHHHHHHHHhcCCcccCCCCCCHHHHH
Confidence 789999999999999886542 2344454321 01112 456553 235899999999998 8987643 3578899
Q ss_pred HhHhhhccchh
Q 011735 105 CAAEYLQMTED 115 (478)
Q Consensus 105 ~AA~~LqM~e~ 115 (478)
.-|+|+++++.
T Consensus 79 ~Ea~fy~i~~~ 89 (100)
T 1t1d_A 79 EEIKFYELGEN 89 (100)
T ss_dssp HHHHHTTCCHH
T ss_pred HHHHHcCCCHH
Confidence 99999999873
No 34
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=92.85 E-value=0.043 Score=46.45 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=59.8
Q ss_pred EEEEEcCEEEEecCcccccCCHHHHHhhcCCCC----CCCcceeecCCCCCcHHHHHHHHHHHhCCcccccc-ccHHHHH
Q 011735 30 LIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIVAAR 104 (478)
Q Consensus 30 V~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~----~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~-~NV~~L~ 104 (478)
|+|.|||+.|...+..|....+ .|+..... .....++-+. -.|..|+.|++|.-+|++.+.+ .++..++
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~FiD---Rdp~~F~~ILnflR~g~l~~p~~~~~~~l~ 75 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKLHYPRHECISAYD 75 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEEe---CCcHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 7899999999999988865432 12322110 0112355553 2368999999999999987654 3589999
Q ss_pred HhHhhhccchhhccccHHHHHH
Q 011735 105 CAAEYLQMTEDVEKGNLIYKIE 126 (478)
Q Consensus 105 ~AA~~LqM~e~~~~~nL~~~ce 126 (478)
.-|+|+++++. +++.||
T Consensus 76 ~Ea~fy~i~~l-----~~~~cc 92 (105)
T 1nn7_A 76 EELAFFGLIPE-----IIGDCC 92 (105)
T ss_dssp HHHHHHTCCSC-----CBCHHH
T ss_pred HHHHHcCCCHH-----HHHHHH
Confidence 99999999873 455554
No 35
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=91.73 E-value=0.058 Score=48.17 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=58.7
Q ss_pred ceeEEEEEcCEEEEecCcccccCCHHHHHhhcCCCC----CCCcceeecCCCCCcHHHHHHHHHHHhCCcccccc-ccHH
Q 011735 27 SSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPE----SSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSA-YNIV 101 (478)
Q Consensus 27 lcDV~I~V~g~~F~~HK~vLas~S~yfr~lf~~~~~----~~~~~~v~L~d~pgg~~~felv~~FcY~~~i~it~-~NV~ 101 (478)
..=|+|.|||+.|...+..|...-+ .|+..... .....++-|. -.|..|+.|++|.-+|++.+.. ..+.
T Consensus 34 ~~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFiD---Rdp~~F~~ILnflR~G~l~~p~~~~~~ 107 (140)
T 2nz0_B 34 DELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLHYPRYECIS 107 (140)
T ss_dssp CCEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEEC---SCHHHHHHHHHHHHHSSBCCCTTSCHH
T ss_pred CCEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEEe---CCcHHHHHHHHHHhcCCcCCCCCcCHH
Confidence 3458899999999999988865432 23332110 0112455543 3479999999999999998654 3589
Q ss_pred HHHHhHhhhccchh
Q 011735 102 AARCAAEYLQMTED 115 (478)
Q Consensus 102 ~L~~AA~~LqM~e~ 115 (478)
.++.-|+|+++++.
T Consensus 108 ~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 108 AYDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHHTCCGG
T ss_pred HHHHHHHHcCCChH
Confidence 99999999999874
No 36
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=70.16 E-value=1.3 Score=28.29 Aligned_cols=17 Identities=41% Similarity=0.427 Sum_probs=14.5
Q ss_pred ccHHHHHHhHhhhccch
Q 011735 98 YNIVAARCAAEYLQMTE 114 (478)
Q Consensus 98 ~NV~~L~~AA~~LqM~e 114 (478)
.||+.|+.||+||+=.|
T Consensus 3 ~nvq~LLeAAeyLErrE 19 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRE 19 (26)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 59999999999998543
No 37
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=54.23 E-value=9.6 Score=40.43 Aligned_cols=83 Identities=8% Similarity=0.039 Sum_probs=56.2
Q ss_pred eEEEEEcCEEEEecCcccccCCH-HHHHhhcCC--CCCCCcceeecCCCCCcHHHHHHHHHHHhC-Ccccccc-ccHHHH
Q 011735 29 DLIIQVKGTRYLLHKFPLLSKCL-RLQRLCSES--PESSQHQIVQLPDFPGGIDAFELCAKFCYG-ITITLSA-YNIVAA 103 (478)
Q Consensus 29 DV~I~V~g~~F~~HK~vLas~S~-yfr~lf~~~--~~~~~~~~v~L~d~pgg~~~felv~~FcY~-~~i~it~-~NV~~L 103 (478)
=|+|.|||+.|...+..|...-+ .+-+++... -.... .++-+ +-.|+.|+.|++|..+ |++.+.. -.+..+
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~-~~~f~---DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~ 128 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLR-NEYFF---DRNRPSFDAILYYYQSGGRLRRPVNVPLDIF 128 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTT-TEEEE---CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCC-CCEEE---cCChHHHHHHHHHHhcCCccccCCcccHHHH
Confidence 47889999999998888764311 112222211 01111 45554 2347999999999999 9987643 356788
Q ss_pred HHhHhhhccchh
Q 011735 104 RCAAEYLQMTED 115 (478)
Q Consensus 104 ~~AA~~LqM~e~ 115 (478)
..-|+|.++.+.
T Consensus 129 ~~E~~f~~i~~~ 140 (514)
T 2r9r_B 129 SEEIRFYELGEE 140 (514)
T ss_dssp HHHHHHTTCCHH
T ss_pred HHHHHhcCCCHH
Confidence 999999999874
No 38
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=53.77 E-value=6.9 Score=33.33 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=26.2
Q ss_pred hhcCCCCCChhhHHHHHHhcCCccccCCCchHHHHHHHHhhCCC
Q 011735 425 EIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKVNNE 468 (478)
Q Consensus 425 EiA~D~nL~~~KF~~Lae~lPd~aR~~~DgLYrAIDiYLk~Hp~ 468 (478)
|...|.+.+|.++.+.+ .|+++|||-||-+||.
T Consensus 90 e~~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 90 EKVHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp EESSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred EECCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 56778888898887665 6789999999999984
No 39
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.34 E-value=15 Score=30.10 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=30.4
Q ss_pred cccccccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhh
Q 011735 93 ITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (478)
Q Consensus 93 i~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v 133 (478)
=.|+++|...++..|+.++.++ |.++|..|+.++.
T Consensus 6 ~~L~~~NCl~i~~~A~~~~~~~------L~~~a~~fi~~nF 40 (105)
T 2eqx_A 6 SGVQVGNCLQVMWLADRHSDPE------LYTAAKHCAKTHL 40 (105)
T ss_dssp CCCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHH
Confidence 3589999999999999999975 8999999988765
No 40
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=26.02 E-value=48 Score=28.58 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCccccccccHHHHHHhHhhhccchhhccccHHHHHHHHHHHhh
Q 011735 80 AFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCI 133 (478)
Q Consensus 80 ~felv~~FcY~~~i~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~v 133 (478)
..+.+.+|+- =.++++|+..++..|+..+.++ |.+.|..|+.++.
T Consensus 120 l~~~c~~~l~---~~l~~~n~~~~~~~A~~~~~~~------L~~~~~~~i~~~~ 164 (172)
T 3htm_A 120 LKVMCEDALC---SNLSVENAAEILILADLHSADQ------LKTQAVDFINYHA 164 (172)
T ss_dssp HHHHHHHHHH---HTCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHTC
T ss_pred HHHHHHHHHH---HhCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHH
Confidence 3344444443 2468899999999999999986 9999999998765
No 41
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=22.72 E-value=28 Score=37.55 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=23.1
Q ss_pred hhHHHHHHhcCCccccCCCchHHHHHHHHhhCCCCc
Q 011735 435 SKFITIAESVPEFSRLDHDDLYRAIDIYLKVNNELA 470 (478)
Q Consensus 435 ~KF~~Lae~lPd~aR~~~DgLYrAIDiYLk~Hp~ls 470 (478)
.-|.+++--|+ +-|=.||||..||+.||.|-
T Consensus 338 ~~Fkdii~KVa-----N~EiyYKAi~FYL~e~P~lL 368 (624)
T 3lvg_A 338 GQFKDIITKVA-----NVELYYRAIQFYLEFKPLLL 368 (624)
T ss_dssp GGGTTTGGGCS-----CSHHHHHHHHHHTTSCCTTS
T ss_pred HHHHHHHHHcc-----hHHHHHHHHHHHHHhChHHH
Confidence 44665555554 45778999999999999873
No 42
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=21.15 E-value=75 Score=23.46 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=30.9
Q ss_pred hccChhHHHHHHHHHHhCCCCCcchHHHHHHHHHHh
Q 011735 215 AELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASR 250 (478)
Q Consensus 215 ~~L~~~lf~rvi~am~~~g~~~~~~i~~~l~~Ya~r 250 (478)
..|++++-+|+-..-..+|.....+|.++|..|+.+
T Consensus 18 vrId~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~ 53 (56)
T 2kel_A 18 IYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_dssp EEEEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 568899999988888888887778999999999865
No 43
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=21.06 E-value=79 Score=22.15 Aligned_cols=37 Identities=19% Similarity=0.066 Sum_probs=31.4
Q ss_pred hccChhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhh
Q 011735 215 AELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRW 251 (478)
Q Consensus 215 ~~L~~~lf~rvi~am~~~g~~~~~~i~~~l~~Ya~r~ 251 (478)
..|+-++++++-...+..|+...++|-.+|..|..+.
T Consensus 14 vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~ 50 (55)
T 2k9i_A 14 VYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNH 50 (55)
T ss_dssp EEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 5788999999999888899877788989998887654
Done!