BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011736
         (478 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
           R219eE271RS262D Adapts A Second Conformational State
          Length = 874

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 20/111 (18%)

Query: 126 VQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARP--- 182
            + +FFE    +K+  +I + + VEA E E +  +I    F+   +  + + L  RP   
Sbjct: 562 TEHMFFEADRIMKIRKMILSDS-VEARE-EALNELI---PFQKGDFKAMYKALEGRPMTV 616

Query: 183 --------EGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVS 225
                   E  PH       EQ E+ + M L L E   K+D   +FNP++ 
Sbjct: 617 RYLDPPLHEFVPHTE----EEQAELAKNMGLTLAEVKAKVDELHEFNPMMG 663


>pdb|1DIK|A Chain A, Pyruvate Phosphate Dikinase
          Length = 874

 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 20/111 (18%)

Query: 126 VQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARP--- 182
            + +FFE    +K+  +I + + VEA E E +  +I    F+   +  + + L  RP   
Sbjct: 562 TEHMFFEADRIMKIRKMILSDS-VEARE-EALNELI---PFQKGDFKAMYKALEGRPMTV 616

Query: 183 --------EGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVS 225
                   E  PH       EQ E+ + M L L E   K+D   +FNP++ 
Sbjct: 617 RYLDPPLHEFVPHTE----EEQAELAKNMGLTLAEVKAKVDELHEFNPMMG 663


>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
          Length = 873

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 20/111 (18%)

Query: 126 VQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARP--- 182
            + +FFE    +K+  +I + + VEA E E +  +I    F+   +  + + L  RP   
Sbjct: 561 TEHMFFEADRIMKIRKMILSDS-VEARE-EALNELI---PFQKGDFKAMYKALEGRPMTV 615

Query: 183 --------EGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVS 225
                   E  PH       EQ E+ + M L L E   K+D   +FNP++ 
Sbjct: 616 RYLDPPLHEFVPHTE----EEQAELAKNMGLTLAEVKAKVDELHEFNPMMG 662


>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
 pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
           Mg-Phosphonopyruvate
          Length = 873

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 20/111 (18%)

Query: 126 VQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARP--- 182
            + +FFE    +K+  +I + + VEA E E +  +I    F+   +  + + L  RP   
Sbjct: 561 TEHMFFEADRIMKIRKMILSDS-VEARE-EALNELI---PFQKGDFKAMYKALEGRPMTV 615

Query: 183 --------EGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVS 225
                   E  PH       EQ E+ + M L L E   K+D   +FNP++ 
Sbjct: 616 RYLDPPLHEFVPHTE----EEQAELAKNMGLTLAEVKAKVDELHEFNPMMG 662


>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
          Length = 873

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 20/111 (18%)

Query: 126 VQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARP--- 182
            + +FFE    +K+  +I + + VEA E E +  +I    F+   +  + + L  RP   
Sbjct: 561 TEHMFFEADRIMKIRKMILSDS-VEARE-EALNELI---PFQKGDFKAMYKALEGRPMTV 615

Query: 183 --------EGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVS 225
                   E  PH       EQ E+ + M L L E   K+D   +FNP++ 
Sbjct: 616 RYLDPPLHEFVPHTE----EEQAELAKNMGLTLAEVKAKVDELHEFNPMMG 662


>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
          Length = 873

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 20/111 (18%)

Query: 126 VQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARP--- 182
            + +FFE    +K+  +I + + VEA E E +  +I    F+   +  + + L  RP   
Sbjct: 561 TEHMFFEADRIMKIRKMILSDS-VEARE-EALNELI---PFQKGDFKAMYKALEGRPMTV 615

Query: 183 --------EGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVS 225
                   E  PH       EQ E+ + M L L E   K+D   +FNP++ 
Sbjct: 616 RYLDPPLHEFVPHTE----EEQAELAKNMGLTLAEVKAKVDELHEFNPMMG 662


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,957,408
Number of Sequences: 62578
Number of extensions: 425390
Number of successful extensions: 936
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 10
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)