Query 011736
Match_columns 478
No_of_seqs 124 out of 672
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:40:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 5E-111 1E-115 873.0 39.6 366 49-473 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.7 0.0035 7.6E-08 61.9 18.4 106 131-253 33-138 (247)
3 TIGR00740 methyltransferase, p 96.4 0.32 6.8E-06 47.5 18.1 83 156-253 53-135 (239)
4 TIGR02752 MenG_heptapren 2-hep 96.1 0.91 2E-05 43.7 19.7 57 146-208 35-91 (231)
5 TIGR02716 C20_methyl_CrtF C-20 95.0 0.47 1E-05 48.1 13.5 55 145-207 138-192 (306)
6 PLN02233 ubiquinone biosynthes 94.5 4.8 0.0001 40.2 19.2 98 144-253 61-158 (261)
7 PF13649 Methyltransf_25: Meth 93.7 0.22 4.8E-06 41.8 6.5 79 160-253 1-81 (101)
8 PRK06202 hypothetical protein; 93.6 1.6 3.4E-05 42.4 13.3 87 152-253 56-142 (232)
9 PF13489 Methyltransf_23: Meth 93.5 0.81 1.8E-05 40.7 10.4 40 154-202 20-59 (161)
10 COG2226 UbiE Methylase involve 92.6 10 0.00022 37.9 17.4 104 133-253 27-132 (238)
11 PLN02336 phosphoethanolamine N 92.5 8.6 0.00019 41.5 18.2 92 144-253 254-345 (475)
12 PRK00216 ubiE ubiquinone/menaq 92.3 5.5 0.00012 37.9 14.9 55 148-208 43-97 (239)
13 PLN02396 hexaprenyldihydroxybe 92.1 2.2 4.7E-05 44.3 12.5 78 157-253 132-211 (322)
14 PRK08317 hypothetical protein; 92.0 11 0.00023 35.6 16.4 53 148-206 11-63 (241)
15 PTZ00098 phosphoethanolamine N 92.0 6.4 0.00014 39.3 15.4 58 142-207 38-95 (263)
16 TIGR01934 MenG_MenH_UbiE ubiqu 92.0 11 0.00024 35.4 18.2 59 144-208 27-85 (223)
17 PF01209 Ubie_methyltran: ubiE 91.8 0.69 1.5E-05 45.7 8.1 92 147-253 38-129 (233)
18 PRK14103 trans-aconitate 2-met 91.7 2.3 4.9E-05 42.0 11.7 50 147-203 20-69 (255)
19 TIGR03438 probable methyltrans 91.3 2.5 5.5E-05 43.1 11.9 54 148-209 57-110 (301)
20 PF13847 Methyltransf_31: Meth 91.2 1.5 3.4E-05 39.4 9.2 84 155-253 2-86 (152)
21 TIGR03587 Pse_Me-ase pseudamin 90.9 5.1 0.00011 38.6 13.0 41 159-206 46-86 (204)
22 PF12847 Methyltransf_18: Meth 90.9 1.6 3.4E-05 36.7 8.4 45 159-210 4-48 (112)
23 smart00138 MeTrc Methyltransfe 90.5 1.5 3.2E-05 44.0 9.2 55 153-207 96-152 (264)
24 TIGR02072 BioC biotin biosynth 89.9 9.3 0.0002 36.2 13.8 46 156-208 34-79 (240)
25 PRK11207 tellurite resistance 89.8 3.3 7.1E-05 39.4 10.5 54 145-207 19-72 (197)
26 TIGR00477 tehB tellurite resis 89.3 3.5 7.6E-05 39.2 10.3 65 143-220 17-81 (195)
27 PRK01683 trans-aconitate 2-met 89.1 4.4 9.6E-05 39.7 11.2 56 144-206 19-74 (258)
28 TIGR02021 BchM-ChlM magnesium 88.0 5.9 0.00013 38.0 11.0 63 138-209 35-99 (219)
29 PRK12335 tellurite resistance 86.4 6.3 0.00014 39.8 10.6 63 146-221 110-172 (287)
30 PRK05785 hypothetical protein; 86.2 15 0.00033 35.8 12.9 72 157-253 52-123 (226)
31 PRK11036 putative S-adenosyl-L 86.1 6.1 0.00013 39.0 10.2 53 147-209 36-88 (255)
32 PF08241 Methyltransf_11: Meth 85.6 1.7 3.8E-05 34.7 5.1 73 161-253 1-73 (95)
33 COG4106 Tam Trans-aconitate me 84.3 3.1 6.6E-05 41.4 6.8 53 149-208 23-75 (257)
34 PLN02336 phosphoethanolamine N 83.0 16 0.00035 39.3 12.5 48 146-202 27-74 (475)
35 TIGR02081 metW methionine bios 81.3 18 0.00039 34.0 10.8 47 147-203 6-52 (194)
36 PF08242 Methyltransf_12: Meth 80.8 0.76 1.6E-05 38.1 1.1 43 161-210 1-43 (99)
37 PLN02585 magnesium protoporphy 80.4 14 0.00031 38.2 10.5 44 156-208 144-187 (315)
38 PLN02244 tocopherol O-methyltr 79.1 29 0.00062 36.1 12.3 80 156-253 118-199 (340)
39 PF13679 Methyltransf_32: Meth 78.3 6.5 0.00014 35.4 6.4 52 152-206 21-72 (141)
40 PRK10258 biotin biosynthesis p 77.5 63 0.0014 31.5 13.6 56 142-206 28-83 (251)
41 TIGR03439 methyl_EasF probable 75.6 35 0.00076 35.5 11.7 71 147-226 69-140 (319)
42 PF02353 CMAS: Mycolic acid cy 75.4 20 0.00043 36.3 9.7 64 146-221 52-115 (273)
43 TIGR00452 methyltransferase, p 74.9 33 0.00072 35.5 11.3 49 146-202 111-159 (314)
44 PRK00107 gidB 16S rRNA methylt 74.8 57 0.0012 31.1 12.1 52 158-220 47-99 (187)
45 PF09243 Rsm22: Mitochondrial 74.2 26 0.00056 35.4 10.2 63 140-209 13-79 (274)
46 PF03291 Pox_MCEL: mRNA cappin 73.8 25 0.00054 36.7 10.1 92 156-255 62-160 (331)
47 COG2230 Cfa Cyclopropane fatty 71.9 40 0.00087 34.6 10.8 65 141-217 57-121 (283)
48 TIGR00138 gidB 16S rRNA methyl 71.5 39 0.00085 31.9 10.1 61 158-230 44-104 (181)
49 TIGR01983 UbiG ubiquinone bios 71.2 95 0.0021 29.4 13.8 43 157-208 46-88 (224)
50 PF03848 TehB: Tellurite resis 69.5 60 0.0013 31.4 10.9 88 146-253 20-107 (192)
51 COG2227 UbiG 2-polyprenyl-3-me 68.7 22 0.00047 35.8 7.9 79 156-253 59-137 (243)
52 PRK11873 arsM arsenite S-adeno 68.5 63 0.0014 31.9 11.4 45 158-208 79-123 (272)
53 PRK11705 cyclopropane fatty ac 68.0 57 0.0012 34.6 11.5 55 145-207 156-210 (383)
54 PF00891 Methyltransf_2: O-met 67.9 38 0.00082 32.9 9.5 45 146-197 90-134 (241)
55 PRK15068 tRNA mo(5)U34 methylt 67.2 67 0.0014 33.2 11.5 47 147-201 113-159 (322)
56 smart00828 PKS_MT Methyltransf 65.9 32 0.00069 32.8 8.3 43 159-208 2-44 (224)
57 PRK15001 SAM-dependent 23S rib 65.8 37 0.00081 36.2 9.5 58 146-210 218-275 (378)
58 PRK11088 rrmA 23S rRNA methylt 65.3 42 0.00091 33.4 9.4 81 120-206 51-131 (272)
59 TIGR02469 CbiT precorrin-6Y C5 64.6 24 0.00052 29.7 6.5 44 159-209 22-65 (124)
60 PRK07580 Mg-protoporphyrin IX 62.8 70 0.0015 30.4 10.1 45 156-209 63-107 (230)
61 PRK05134 bifunctional 3-demeth 62.8 1.5E+02 0.0032 28.4 15.3 54 155-221 47-100 (233)
62 PRK09489 rsmC 16S ribosomal RN 58.2 24 0.00052 36.9 6.4 66 145-221 185-250 (342)
63 COG1341 Predicted GTPase or GT 57.7 1.4E+02 0.003 32.2 11.9 66 323-395 189-254 (398)
64 PF12147 Methyltransf_20: Puta 57.4 1.6E+02 0.0034 30.7 11.8 88 153-255 132-223 (311)
65 TIGR02085 meth_trns_rumB 23S r 57.1 1.5E+02 0.0032 31.3 12.1 41 159-208 236-276 (374)
66 PRK06922 hypothetical protein; 56.8 65 0.0014 37.0 9.8 82 158-254 420-501 (677)
67 PF05175 MTS: Methyltransferas 56.6 21 0.00046 33.0 5.1 59 144-209 19-77 (170)
68 smart00650 rADc Ribosomal RNA 56.5 29 0.00062 31.9 6.0 54 146-208 3-56 (169)
69 PLN02490 MPBQ/MSBQ methyltrans 56.0 1.2E+02 0.0025 32.0 11.0 44 156-206 113-156 (340)
70 PRK10909 rsmD 16S rRNA m(2)G96 53.0 1.8E+02 0.0039 28.0 11.1 44 158-209 55-98 (199)
71 PLN02446 (5-phosphoribosyl)-5- 49.8 20 0.00044 36.4 4.0 27 153-180 55-81 (262)
72 PRK07402 precorrin-6B methylas 49.2 51 0.0011 31.0 6.6 64 140-210 24-87 (196)
73 PLN02232 ubiquinone biosynthes 49.1 2.1E+02 0.0046 26.1 12.4 57 191-253 1-57 (160)
74 PRK00274 ksgA 16S ribosomal RN 49.0 36 0.00078 34.1 5.8 51 148-207 34-84 (272)
75 PRK14968 putative methyltransf 49.0 40 0.00088 30.7 5.7 44 156-208 23-66 (188)
76 PRK13944 protein-L-isoaspartat 48.0 49 0.0011 31.6 6.3 57 147-209 63-119 (205)
77 PRK04148 hypothetical protein; 47.8 95 0.0021 28.4 7.7 43 148-198 8-50 (134)
78 TIGR00536 hemK_fam HemK family 47.1 50 0.0011 33.3 6.4 44 158-208 116-159 (284)
79 PRK08287 cobalt-precorrin-6Y C 45.9 56 0.0012 30.4 6.2 46 157-209 32-77 (187)
80 COG2890 HemK Methylase of poly 45.7 35 0.00075 34.7 5.1 44 159-209 113-156 (280)
81 PRK09328 N5-glutamine S-adenos 43.7 58 0.0012 32.0 6.2 49 153-208 105-153 (275)
82 PRK00121 trmB tRNA (guanine-N( 43.4 47 0.001 31.7 5.3 47 156-209 40-86 (202)
83 TIGR00537 hemK_rel_arch HemK-r 41.9 67 0.0014 29.7 6.0 41 159-208 22-62 (179)
84 COG2813 RsmC 16S RNA G1207 met 41.8 48 0.001 34.3 5.4 60 143-209 145-204 (300)
85 PRK10507 bifunctional glutathi 41.1 58 0.0013 37.0 6.3 85 164-253 354-444 (619)
86 KOG2904 Predicted methyltransf 36.9 55 0.0012 33.8 4.8 45 156-207 148-192 (328)
87 PRK00517 prmA ribosomal protei 36.9 71 0.0015 31.5 5.6 61 140-208 101-163 (250)
88 TIGR00755 ksgA dimethyladenosi 36.2 82 0.0018 31.0 6.0 53 146-207 19-71 (253)
89 PRK13255 thiopurine S-methyltr 36.1 4.2E+02 0.009 25.8 11.4 37 157-202 38-74 (218)
90 TIGR03840 TMPT_Se_Te thiopurin 35.5 3.1E+02 0.0067 26.6 9.8 36 158-202 36-71 (213)
91 PRK11727 23S rRNA mA1618 methy 35.2 1E+02 0.0022 32.2 6.7 49 154-209 112-160 (321)
92 TIGR00080 pimt protein-L-isoas 34.6 1E+02 0.0023 29.4 6.3 57 147-209 68-124 (215)
93 TIGR00091 tRNA (guanine-N(7)-) 34.4 81 0.0018 29.7 5.4 47 156-209 16-62 (194)
94 PHA03411 putative methyltransf 34.4 71 0.0015 32.8 5.2 72 127-206 34-107 (279)
95 PRK00050 16S rRNA m(4)C1402 me 34.1 71 0.0015 33.0 5.2 58 146-209 9-66 (296)
96 TIGR03534 RF_mod_PrmC protein- 34.0 78 0.0017 30.4 5.3 46 156-208 87-132 (251)
97 TIGR00406 prmA ribosomal prote 33.7 88 0.0019 31.6 5.8 68 133-208 132-203 (288)
98 TIGR02129 hisA_euk phosphoribo 33.1 42 0.00091 33.9 3.3 25 153-181 50-74 (253)
99 COG2242 CobL Precorrin-6B meth 33.1 1.2E+02 0.0026 29.4 6.2 51 150-210 28-81 (187)
100 TIGR01626 ytfJ_HI0045 conserve 32.9 75 0.0016 30.5 4.8 89 156-250 59-159 (184)
101 PRK00312 pcm protein-L-isoaspa 32.9 1.1E+02 0.0024 29.0 6.1 54 148-210 70-123 (212)
102 PTZ00338 dimethyladenosine tra 31.9 1.5E+02 0.0032 30.5 7.1 54 147-209 27-80 (294)
103 PF15609 PRTase_2: Phosphoribo 31.8 1.8E+02 0.004 28.2 7.2 70 151-224 117-187 (191)
104 PRK14121 tRNA (guanine-N(7)-)- 31.5 93 0.002 33.4 5.7 54 148-208 114-167 (390)
105 PRK14966 unknown domain/N5-glu 31.1 1.1E+02 0.0023 33.4 6.1 51 159-220 254-304 (423)
106 PLN02668 indole-3-acetate carb 30.7 7.1E+02 0.015 26.8 12.3 100 156-260 63-182 (386)
107 COG0075 Serine-pyruvate aminot 30.6 3E+02 0.0065 29.6 9.3 94 330-427 179-290 (383)
108 PRK14896 ksgA 16S ribosomal RN 30.5 1.1E+02 0.0024 30.3 5.9 52 148-208 21-72 (258)
109 PF11455 DUF3018: Protein of 29.1 33 0.00071 27.7 1.4 21 409-429 3-23 (65)
110 PRK13942 protein-L-isoaspartat 28.7 1.5E+02 0.0033 28.4 6.3 56 148-209 68-123 (212)
111 PF01135 PCMT: Protein-L-isoas 28.4 1.7E+02 0.0036 28.5 6.5 58 147-210 63-120 (209)
112 KOG1270 Methyltransferases [Co 27.4 1.7E+02 0.0036 30.1 6.4 83 151-253 87-171 (282)
113 PF05401 NodS: Nodulation prot 26.2 3E+02 0.0065 27.0 7.7 65 147-223 33-98 (201)
114 TIGR03533 L3_gln_methyl protei 26.1 1.3E+02 0.0029 30.4 5.6 45 157-208 122-166 (284)
115 PRK11805 N5-glutamine S-adenos 25.9 1.3E+02 0.0028 30.9 5.5 44 158-208 135-178 (307)
116 PHA03412 putative methyltransf 24.9 86 0.0019 31.5 3.8 46 157-206 50-95 (241)
117 cd02440 AdoMet_MTases S-adenos 24.4 3.2E+02 0.0069 20.7 8.7 38 159-204 1-38 (107)
118 PF02527 GidB: rRNA small subu 23.9 1.5E+02 0.0032 28.4 5.1 59 159-229 51-109 (184)
119 PTZ00063 histone deacetylase; 23.7 57 0.0012 35.6 2.5 38 324-367 279-316 (436)
120 TIGR01716 RGG_Cterm transcript 23.5 1.4E+02 0.0029 28.4 4.9 53 49-101 127-180 (220)
121 COG1093 SUI2 Translation initi 23.4 1.6E+02 0.0034 30.1 5.4 39 184-222 219-261 (269)
122 PRK00377 cbiT cobalt-precorrin 23.3 2.4E+02 0.0053 26.5 6.5 48 156-209 40-87 (198)
123 PF02056 Glyco_hydro_4: Family 23.0 2.8E+02 0.0061 26.6 6.8 58 168-225 9-66 (183)
124 PRK03522 rumB 23S rRNA methylu 22.6 3E+02 0.0064 28.1 7.5 52 157-221 174-226 (315)
125 PF14331 ImcF-related_N: ImcF- 22.6 1.6E+02 0.0035 29.5 5.4 64 168-231 7-83 (266)
126 PRK13587 1-(5-phosphoribosyl)- 22.4 1.1E+02 0.0025 30.1 4.2 32 151-182 42-75 (234)
127 TIGR00563 rsmB ribosomal RNA s 21.8 2.1E+02 0.0045 30.6 6.4 67 143-220 225-291 (426)
128 PRK14902 16S rRNA methyltransf 21.7 2.4E+02 0.0052 30.4 6.8 63 145-217 239-301 (444)
129 TIGR03704 PrmC_rel_meth putati 21.6 1.9E+02 0.0042 28.6 5.7 46 157-209 87-132 (251)
130 cd05298 GH4_GlvA_pagL_like Gly 21.6 1.9E+02 0.0041 31.4 6.0 62 163-225 6-67 (437)
131 PRK14024 phosphoribosyl isomer 21.6 89 0.0019 30.8 3.3 29 153-182 44-74 (241)
132 KOG1165 Casein kinase (serine/ 21.4 51 0.0011 35.1 1.5 13 154-166 164-176 (449)
133 COG1500 Predicted exosome subu 21.0 3E+02 0.0065 27.6 6.6 76 364-442 74-152 (234)
134 COG5238 RNA1 Ran GTPase-activa 21.0 2.1E+02 0.0046 29.9 5.7 64 148-211 84-148 (388)
135 PRK03646 dadX alanine racemase 20.6 2E+02 0.0043 30.2 5.8 53 156-212 117-177 (355)
136 PRK14967 putative methyltransf 20.6 2.3E+02 0.005 27.2 5.9 43 158-208 38-80 (223)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=4.7e-111 Score=872.96 Aligned_cols=366 Identities=49% Similarity=0.821 Sum_probs=345.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhhccCCCCCChhhhHHHHHHHHHHHHHhhcCcccccccccCCCC--CchHHHHH
Q 011736 49 LIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNSTKIS--SITEEIIV 126 (478)
Q Consensus 49 L~~LL~~cA~Av~~g~~~~A~~~L~~L~~laS~~Gd~~qRlA~yF~eAL~~Rl~~~~~~~~~al~~~~~~--~~~~~~~a 126 (478)
|+|||++||+||++||.+.|+.+|++|++++||+|||+||||+||++||.+||.+.+++.|.++...... ...+.+.|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999988776543322 14566799
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecC----CHHHHHH
Q 011736 127 QKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLEQ 202 (478)
Q Consensus 127 ~~~f~~~~P~~kfa~~tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~----~~~~L~~ 202 (478)
++.||++|||+||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+. +.+.+++
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~ 160 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE 160 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 7889999
Q ss_pred HHHHHHHHHHhCCCceEEccc-ccccccCCccccC-CCCCeEEEEeccccccccCCCCCCcccCCCCCccCCcchhhHHH
Q 011736 203 MALRLTEEAEKLDIPFQFNPI-VSKLENVDLESLR-KTGEALAVSSVLQMHRLLATDDEMPRRTSPSASRTSSSSHLQRV 280 (478)
Q Consensus 203 tg~rL~~fA~~lgvpFeF~~V-~~~~e~l~~~~L~-~~gEalaVn~~~~Lh~Ll~~~de~~~~~~~~~~~~~~~~~~q~~ 280 (478)
||++|.+||+++||||+|++| ..++|++++++|+ ++||+|||||+++||||+..+.
T Consensus 161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~---------------------- 218 (374)
T PF03514_consen 161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESG---------------------- 218 (374)
T ss_pred HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccc----------------------
Confidence 999999999999999999995 5699999999999 9999999999999999963111
Q ss_pred HhhccccchhhhhhcccccCCCCCCcccccCCCCcccCCCchHHHHHHHHHhcCCCEEEEEeecCCCCCCChHHHHHHHH
Q 011736 281 LHMNRRTLGEWLEKDSVLMFSPSPDSASASASTPLSLAASPKMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEAL 360 (478)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~pd~s~~~~~~p~~~~~~~~~~~~L~~ir~L~P~vvvlvE~ea~hn~~~F~~RF~eaL 360 (478)
....+++.||+.||+|+|+|||++|+|+|||+++|++||.|||
T Consensus 219 -------------------------------------~~~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal 261 (374)
T PF03514_consen 219 -------------------------------------ALENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLERFREAL 261 (374)
T ss_pred -------------------------------------cccchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHHHHHHHH
Confidence 0123789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHhCCCccccCChhHHHHHHHHH
Q 011736 361 NFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEKLEKWILRLELAGFGRMPLSYHGILQARRLL 440 (478)
Q Consensus 361 ~yYsalfDsLda~l~~~~~eR~~iE~~~lg~eI~niVA~eG~~R~ERhE~~~~W~~rm~~aGF~~~~ls~~~~~qAk~LL 440 (478)
+||+++|||||+++|+++++|..+|+.+||+||+|||||||.+|+||||++++|+.||++|||+++|+|.+++.|||.||
T Consensus 262 ~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll 341 (374)
T PF03514_consen 262 HYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLL 341 (374)
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcEEEecCCEEEEEECCceeEEEeeee
Q 011736 441 QSYGYDGYKIKEENGCLVICWQDRPLFSVSAWR 473 (478)
Q Consensus 441 ~~~~~~gy~v~~~~g~L~L~Wk~~pL~~~SaW~ 473 (478)
+.|+++||+|.+++|||+||||++||+++||||
T Consensus 342 ~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 342 RKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred hccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 999878999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.68 E-value=0.0035 Score=61.87 Aligned_cols=106 Identities=9% Similarity=0.110 Sum_probs=64.7
Q ss_pred HhhcchhhhHHHHHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 011736 131 FELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEE 210 (478)
Q Consensus 131 ~~~~P~~kfa~~tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~f 210 (478)
....|.+...|-+++..+-.-+.. .-+|+|+|.|.|.--..|.+.+. .|..++|||+.+.+.++.+.+++.++
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~~--~~~vLDlGcGtG~~~~~l~~~~~-----~~~~~v~gvD~S~~ml~~A~~~~~~~ 105 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQP--GTQVYDLGCSLGAATLSVRRNIH-----HDNCKIIAIDNSPAMIERCRRHIDAY 105 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCCC--CCEEEEEcccCCHHHHHHHHhcC-----CCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 456888888887777544333322 24799999999974444433331 25589999999999998888877553
Q ss_pred HHhCCCceEEcccccccccCCccccCCCCCeEEEEeccccccc
Q 011736 211 AEKLDIPFQFNPIVSKLENVDLESLRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 211 A~~lgvpFeF~~V~~~~e~l~~~~L~~~gEalaVn~~~~Lh~L 253 (478)
.. .-.++|. ...++++.. ...+ +|-|.+.||++
T Consensus 106 ~~--~~~v~~~--~~d~~~~~~----~~~D--~vv~~~~l~~l 138 (247)
T PRK15451 106 KA--PTPVDVI--EGDIRDIAI----ENAS--MVVLNFTLQFL 138 (247)
T ss_pred CC--CCCeEEE--eCChhhCCC----CCCC--EEehhhHHHhC
Confidence 21 1134443 233333322 1223 34456778888
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.39 E-value=0.32 Score=47.49 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=50.3
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccCCcccc
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESL 235 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L 235 (478)
..-+|+|+|.|.|. ++..|+.+- ..|..++|||+.+.+.++.+.+++.++.. +..++|. ...+.++..
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~-~~p~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~--~~d~~~~~~--- 120 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEIL--CNDIRHVEI--- 120 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhc-CCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEE--ECChhhCCC---
Confidence 34579999999995 444444432 12568999999999988888887765321 2233442 233333322
Q ss_pred CCCCCeEEEEeccccccc
Q 011736 236 RKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 236 ~~~gEalaVn~~~~Lh~L 253 (478)
.+.. +|-|.+.|||+
T Consensus 121 -~~~d--~v~~~~~l~~~ 135 (239)
T TIGR00740 121 -KNAS--MVILNFTLQFL 135 (239)
T ss_pred -CCCC--EEeeecchhhC
Confidence 1223 45566778887
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.15 E-value=0.91 Score=43.68 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=38.3
Q ss_pred HHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 146 QAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 146 qAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
+.++..+.=.+.-+|+|+|.|.|.-...|.+.+ +|..++|||+.+...++.+.+++.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~------~~~~~v~gvD~s~~~~~~a~~~~~ 91 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAV------GPEGHVIGLDFSENMLSVGRQKVK 91 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHh------CCCCEEEEEECCHHHHHHHHHHHH
Confidence 455565553344589999999998333333322 245689999999888877776654
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.98 E-value=0.47 Score=48.12 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=37.8
Q ss_pred HHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHH
Q 011736 145 NQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRL 207 (478)
Q Consensus 145 NqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL 207 (478)
.+.|++.+.-.+.-+|+|+|.|.|. +...++++- |.+++|+++.+ ..++.+.+++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-~~~~~a~~~~ 192 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-GAIDLVNENA 192 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-HHHHHHHHHH
Confidence 5677787765566799999999994 344444442 67899999864 5566555443
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.54 E-value=4.8 Score=40.19 Aligned_cols=98 Identities=13% Similarity=0.045 Sum_probs=57.0
Q ss_pred HHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEccc
Q 011736 144 TNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPI 223 (478)
Q Consensus 144 ANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V 223 (478)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+- +|.-+||||+.+.+.++.+.++....++...-..+|.
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~-- 132 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWI-- 132 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEE--
Confidence 34444444443445689999999997 333455442 2345999999999999888777543222222233332
Q ss_pred ccccccCCccccCCCCCeEEEEeccccccc
Q 011736 224 VSKLENVDLESLRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 224 ~~~~e~l~~~~L~~~gEalaVn~~~~Lh~L 253 (478)
....+++.. .++..=+|.|.+.||++
T Consensus 133 ~~d~~~lp~----~~~sfD~V~~~~~l~~~ 158 (261)
T PLN02233 133 EGDATDLPF----DDCYFDAITMGYGLRNV 158 (261)
T ss_pred EcccccCCC----CCCCEeEEEEecccccC
Confidence 223333322 22333366677788887
No 7
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=93.66 E-value=0.22 Score=41.78 Aligned_cols=79 Identities=25% Similarity=0.310 Sum_probs=48.6
Q ss_pred EeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccCCccccC-CC
Q 011736 160 IIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLR-KT 238 (478)
Q Consensus 160 IIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L~-~~ 238 (478)
|+|+|.|.|.-=..|.+.+ .+ | |..++|+|+-+.+.++.+.++..+ .+++.+|. ...+.+ +. ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~-~~~~~~gvD~s~~~l~~~~~~~~~----~~~~~~~~--~~D~~~-----l~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--G-PSSRVIGVDISPEMLELAKKRFSE----DGPKVRFV--QADARD-----LPFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSHH----TTTTSEEE--ESCTTC-----HHHHS
T ss_pred CEEeecCCcHHHHHHHHHh-hh--c-ccceEEEEECCHHHHHHHHHhchh----cCCceEEE--ECCHhH-----CcccC
Confidence 7999999999888888887 22 2 669999999999988877766554 45566663 233333 33 23
Q ss_pred CCeEEEEe-ccccccc
Q 011736 239 GEALAVSS-VLQMHRL 253 (478)
Q Consensus 239 gEalaVn~-~~~Lh~L 253 (478)
+..=+|-| ...+||+
T Consensus 66 ~~~D~v~~~~~~~~~~ 81 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHL 81 (101)
T ss_dssp SSEEEEEE-TTGGGGS
T ss_pred CCeeEEEEcCCccCCC
Confidence 33444555 4458886
No 8
>PRK06202 hypothetical protein; Provisional
Probab=93.60 E-value=1.6 Score=42.36 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=49.8
Q ss_pred hcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccCC
Q 011736 152 MEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVD 231 (478)
Q Consensus 152 ~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~ 231 (478)
+...+...|+|+|.|.|. +...|...... ..|..+||||+.+.+.++.+.++.. ..++.+.... .+.+.
T Consensus 56 l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s~~~l~~a~~~~~----~~~~~~~~~~----~~~l~ 124 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPDPRAVAFARANPR----RPGVTFRQAV----SDELV 124 (232)
T ss_pred cCCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCCHHHHHHHHhccc----cCCCeEEEEe----ccccc
Confidence 333456789999999996 33333222211 2345799999999888876655432 2355554421 11221
Q ss_pred ccccCCCCCeEEEEeccccccc
Q 011736 232 LESLRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 232 ~~~L~~~gEalaVn~~~~Lh~L 253 (478)
. .++..=+|.|.+.|||+
T Consensus 125 ~----~~~~fD~V~~~~~lhh~ 142 (232)
T PRK06202 125 A----EGERFDVVTSNHFLHHL 142 (232)
T ss_pred c----cCCCccEEEECCeeecC
Confidence 1 12223356666779998
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.52 E-value=0.81 Score=40.66 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=29.4
Q ss_pred CCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHH
Q 011736 154 GEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQ 202 (478)
Q Consensus 154 g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~ 202 (478)
..+.-.|+|+|.|.| .| ++.|+.+ |. ++||++.+...++.
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECCHHHHhh
Confidence 456679999999999 44 4445554 32 99999999776655
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=92.63 E-value=10 Score=37.92 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=69.4
Q ss_pred hcchhhhHH-HHHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHH
Q 011736 133 LCPFLKLSY-VITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEA 211 (478)
Q Consensus 133 ~~P~~kfa~-~tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA 211 (478)
..+++.|+. .+=+++..+.+.-.+--+|+|.+.|.|-. .-.|+..-+ .-+||+++-+...|+...+++.+.
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~----a~~~~k~~g---~g~v~~~D~s~~ML~~a~~k~~~~- 98 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDM----ALLLAKSVG---TGEVVGLDISESMLEVAREKLKKK- 98 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHH----HHHHHHhcC---CceEEEEECCHHHHHHHHHHhhcc-
Confidence 355666653 56677777766544678999999998853 233343332 789999999999999988887753
Q ss_pred HhCCCc-eEEcccccccccCCccccCCCCCeEEEEeccccccc
Q 011736 212 EKLDIP-FQFNPIVSKLENVDLESLRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 212 ~~lgvp-FeF~~V~~~~e~l~~~~L~~~gEalaVn~~~~Lh~L 253 (478)
|+. ++| |....|+|.+. ++-.=+|.|.|.||++
T Consensus 99 ---~~~~i~f--v~~dAe~LPf~----D~sFD~vt~~fglrnv 132 (238)
T COG2226 99 ---GVQNVEF--VVGDAENLPFP----DNSFDAVTISFGLRNV 132 (238)
T ss_pred ---CccceEE--EEechhhCCCC----CCccCEEEeeehhhcC
Confidence 332 333 34455555432 3334488888999888
No 11
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=92.50 E-value=8.6 Score=41.47 Aligned_cols=92 Identities=9% Similarity=0.038 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEccc
Q 011736 144 TNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPI 223 (478)
Q Consensus 144 ANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V 223 (478)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+. | .++|||+.+.+.++.+.++. ...+...+|..
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~-~---~~v~gvDiS~~~l~~A~~~~----~~~~~~v~~~~- 320 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENF-D---VHVVGIDLSVNMISFALERA----IGRKCSVEFEV- 320 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhc-C---CEEEEEECCHHHHHHHHHHh----hcCCCceEEEE-
Confidence 34556666653445689999999995 334566554 2 48999999988777665543 23333455532
Q ss_pred ccccccCCccccCCCCCeEEEEeccccccc
Q 011736 224 VSKLENVDLESLRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 224 ~~~~e~l~~~~L~~~gEalaVn~~~~Lh~L 253 (478)
..+.++.. .++..=+|.|...++|+
T Consensus 321 -~d~~~~~~----~~~~fD~I~s~~~l~h~ 345 (475)
T PLN02336 321 -ADCTKKTY----PDNSFDVIYSRDTILHI 345 (475)
T ss_pred -cCcccCCC----CCCCEEEEEECCccccc
Confidence 12222111 12223355666667777
No 12
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=92.30 E-value=5.5 Score=37.88 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=35.8
Q ss_pred HHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 148 IVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 148 ILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
+++.+.-.+..+|+|+|.|.|.=-.. ++.+ +|+..++|+++.+...++.+.+++.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~----l~~~--~~~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIA----LAKA--VGKTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHH----HHHH--cCCCCeEEEEeCCHHHHHHHHHhhc
Confidence 34444333457899999999863222 3322 2346899999998887777666653
No 13
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=92.07 E-value=2.2 Score=44.33 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=45.9
Q ss_pred eeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCC--ceEEcccccccccCCccc
Q 011736 157 MVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDI--PFQFNPIVSKLENVDLES 234 (478)
Q Consensus 157 ~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgv--pFeF~~V~~~~e~l~~~~ 234 (478)
.-.|+|+|.|.|. +...|+.+ + .++|||+.+.+.++.+.++. +..++ ..+|.. ...+++..
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s~~~i~~Ar~~~----~~~~~~~~i~~~~--~dae~l~~-- 194 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAVDKNVKIARLHA----DMDPVTSTIEYLC--TTAEKLAD-- 194 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCCHHHHHHHHHHH----HhcCcccceeEEe--cCHHHhhh--
Confidence 3479999999998 45566643 2 48999999988777665442 22121 233332 23333321
Q ss_pred cCCCCCeEEEEeccccccc
Q 011736 235 LRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 235 L~~~gEalaVn~~~~Lh~L 253 (478)
.++..=+|.|...|||+
T Consensus 195 --~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 195 --EGRKFDAVLSLEVIEHV 211 (322)
T ss_pred --ccCCCCEEEEhhHHHhc
Confidence 11222366677788998
No 14
>PRK08317 hypothetical protein; Provisional
Probab=91.99 E-value=11 Score=35.60 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHH
Q 011736 148 IVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALR 206 (478)
Q Consensus 148 ILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~r 206 (478)
+++.+.-.+.-+|+|+|.|.|. |.. .++.+- +|.-++|+|+.+...++.+.++
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~~---~~a~~~--~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DAR---ELARRV--GPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HHH---HHHHhc--CCCcEEEEEeCCHHHHHHHHHH
Confidence 5666665566789999999875 333 333332 2456999999988877666555
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=91.97 E-value=6.4 Score=39.33 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHH
Q 011736 142 VITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRL 207 (478)
Q Consensus 142 ~tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL 207 (478)
.-+.+.|++.+.-.+.-+|+|+|.|.|.-- ..|+.+. ..++|+|+.+...++.+.++.
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~----~~~v~giD~s~~~~~~a~~~~ 95 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY----GAHVHGVDICEKMVNIAKLRN 95 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc----CCEEEEEECCHHHHHHHHHHc
Confidence 344567777776556678999999998843 3334332 258999999988777766654
No 16
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=91.96 E-value=11 Score=35.41 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 144 TNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 144 ANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
.-+.+++.+.-.+...|+|+|.|.|.- ...++.+ +|+..++|+|+.+...++.+.+++.
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~----~~~~~~~--~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDL----AIELAKS--APDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChh----HHHHHHh--cCCCceEEEEECCHHHHHHHHHHhc
Confidence 334566666555678999999998863 3333333 2334789999998887777766653
No 17
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=91.81 E-value=0.69 Score=45.71 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=51.3
Q ss_pred HHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccc
Q 011736 147 AIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSK 226 (478)
Q Consensus 147 AILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~ 226 (478)
.+++.+...+-.+|+|++.|.|.-+..| +.+- +|.-+|||++.+.+.|+.+.+++.+.... ..+| +...
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~--~~~~~v~~vD~s~~ML~~a~~k~~~~~~~---~i~~--v~~d 106 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRV--GPNGKVVGVDISPGMLEVARKKLKREGLQ---NIEF--VQGD 106 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGS--S---EEEEEES-HHHHHHHHHHHHHTT-----SEEE--EE-B
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHC--CCccEEEEecCCHHHHHHHHHHHHhhCCC---CeeE--EEcC
Confidence 3455556666679999999999655444 4332 23459999999999999999988864332 2233 2233
Q ss_pred cccCCccccCCCCCeEEEEeccccccc
Q 011736 227 LENVDLESLRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 227 ~e~l~~~~L~~~gEalaVn~~~~Lh~L 253 (478)
.|+|.. .++..=+|.|.|.||++
T Consensus 107 a~~lp~----~d~sfD~v~~~fglrn~ 129 (233)
T PF01209_consen 107 AEDLPF----PDNSFDAVTCSFGLRNF 129 (233)
T ss_dssp TTB--S-----TT-EEEEEEES-GGG-
T ss_pred HHHhcC----CCCceeEEEHHhhHHhh
Confidence 344332 34555588899999988
No 18
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=91.71 E-value=2.3 Score=41.96 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=36.0
Q ss_pred HHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHH
Q 011736 147 AIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQM 203 (478)
Q Consensus 147 AILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~t 203 (478)
.+++.+.-.+.-+|+|+|.|.|. +...|+.+- |..++|||+.+...++.+
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~~~~~~a 69 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSPEMVAAA 69 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHH
Confidence 46666654555789999999994 455666653 346899999998776654
No 19
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=91.34 E-value=2.5 Score=43.06 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=43.0
Q ss_pred HHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 148 IVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 148 ILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
|.+.+.. ...|||+|.|.|.-=..|++++.. ..++|+|+-+.+.|+.+.++|.+
T Consensus 57 ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~~ 110 (301)
T TIGR03438 57 IAAATGA--GCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALAA 110 (301)
T ss_pred HHHhhCC--CCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHHh
Confidence 5555532 247999999999887888888743 37899999999999999999874
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=91.19 E-value=1.5 Score=39.43 Aligned_cols=84 Identities=23% Similarity=0.311 Sum_probs=50.7
Q ss_pred CceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCc-eEEcccccccccCCcc
Q 011736 155 EKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIP-FQFNPIVSKLENVDLE 233 (478)
Q Consensus 155 ~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvp-FeF~~V~~~~e~l~~~ 233 (478)
.+..+|+|+|.|.|..=..|.+.+ .|..+||||+.+.+.++.+.+ .++..+++ .+|.. ..+++++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s~~~i~~a~~----~~~~~~~~ni~~~~--~d~~~l~~~ 69 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDISEEMIEYAKK----RAKELGLDNIEFIQ--GDIEDLPQE 69 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESSHHHHHHHHH----HHHHTTSTTEEEEE--SBTTCGCGC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECcHHHHHHhhc----ccccccccccceEE--eehhccccc
Confidence 356789999999997655555422 134669999999887776655 44556776 55543 445444422
Q ss_pred ccCCCCCeEEEEeccccccc
Q 011736 234 SLRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 234 ~L~~~gEalaVn~~~~Lh~L 253 (478)
+. +..=+|.+...+|++
T Consensus 70 -~~--~~~D~I~~~~~l~~~ 86 (152)
T PF13847_consen 70 -LE--EKFDIIISNGVLHHF 86 (152)
T ss_dssp -SS--TTEEEEEEESTGGGT
T ss_pred -cC--CCeeEEEEcCchhhc
Confidence 22 223345555556766
No 21
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=90.94 E-value=5.1 Score=38.63 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=30.3
Q ss_pred EEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHH
Q 011736 159 HIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALR 206 (478)
Q Consensus 159 HIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~r 206 (478)
.|+|+|.|.|..-..|.+.+ |..++|||+.+.+.++.+.++
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~-------~~~~v~giDiS~~~l~~A~~~ 86 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL-------PFKHIYGVEINEYAVEKAKAY 86 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC-------CCCeEEEEECCHHHHHHHHhh
Confidence 59999999996555554332 236899999998888876554
No 22
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.87 E-value=1.6 Score=36.67 Aligned_cols=45 Identities=29% Similarity=0.332 Sum_probs=33.9
Q ss_pred EEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 011736 159 HIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEE 210 (478)
Q Consensus 159 HIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~f 210 (478)
+|+|+|.|.|.-=..|.+. + |..+||||+.+.+.++.+.++..+.
T Consensus 4 ~vLDlGcG~G~~~~~l~~~---~----~~~~v~gvD~s~~~~~~a~~~~~~~ 48 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARL---F----PGARVVGVDISPEMLEIARERAAEE 48 (112)
T ss_dssp EEEEETTTTSHHHHHHHHH---H----TTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred EEEEEcCcCCHHHHHHHhc---C----CCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 6899999999654444441 2 4478999999999999888888543
No 23
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=90.50 E-value=1.5 Score=44.03 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=41.1
Q ss_pred cCCceeEEeecCCCCCcchHHHHHHHhcCCC--CCCeEEEeEecCCHHHHHHHHHHH
Q 011736 153 EGEKMVHIIDLNSFEPAQWINLLQTLSARPE--GPPHLRITGIHEQKEVLEQMALRL 207 (478)
Q Consensus 153 ~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~--gpP~LRIT~I~~~~~~L~~tg~rL 207 (478)
...+.++|.|.|.|.|--.-+|--.|+..-. ..+..+|+|++-+...|+.+.+..
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 3446799999999999987777655554321 234689999999999998777654
No 24
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=89.90 E-value=9.3 Score=36.18 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=31.6
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
+..+|+|+|.|.|.-...| +.+ + |..++|+|+.+...++.+.+++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l----~~~--~-~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRAL----LKR--F-PQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred CCCeEEEECCCccHHHHHH----HHh--C-CCCcEEEEeChHHHHHHHHHhcC
Confidence 3468999999999633333 333 2 45679999998877766665543
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=89.77 E-value=3.3 Score=39.43 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=36.4
Q ss_pred HHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHH
Q 011736 145 NQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRL 207 (478)
Q Consensus 145 NqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL 207 (478)
+..+++.+.....-.|+|+|.|.|. +...|+.+ | .+||||+.+.+.++.+.++.
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~--g---~~V~gvD~S~~~i~~a~~~~ 72 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G---FDVTAWDKNPMSIANLERIK 72 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC--C---CEEEEEeCCHHHHHHHHHHH
Confidence 3455555554445689999999997 23445554 3 48999999988777665543
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=89.30 E-value=3.5 Score=39.18 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEE
Q 011736 143 ITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQF 220 (478)
Q Consensus 143 tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF 220 (478)
++...|++++.-.+.-+|+|+|.|.|.--..| +.+ | .++|||+.+...++.+.++ ++.-|++.++
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~l----a~~--g---~~V~~iD~s~~~l~~a~~~----~~~~~~~v~~ 81 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSLYL----SLA--G---YDVRAWDHNPASIASVLDM----KARENLPLRT 81 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHHHH----HHC--C---CeEEEEECCHHHHHHHHHH----HHHhCCCcee
Confidence 56778888887655679999999999854444 333 2 4899999998777665543 3444666444
No 27
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=89.13 E-value=4.4 Score=39.72 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=39.4
Q ss_pred HHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHH
Q 011736 144 TNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALR 206 (478)
Q Consensus 144 ANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~r 206 (478)
-+..|++.+.-.+.-+|+|+|.|.|. +...|+.+- |..+++||+.+.+.++.+.++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~~~i~~a~~~ 74 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSPAMLAEARSR 74 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHh
Confidence 35567777665556789999999883 344555542 346999999998877766554
No 28
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=88.01 E-value=5.9 Score=37.96 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHhhc--CCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 138 KLSYVITNQAIVEAME--GEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 138 kfa~~tANqAILEA~~--g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
..++-...+.+++.+. ..+.-+|+|+|.|.|. +...|+.+. .+||||+.+.+.++.+.+++..
T Consensus 35 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s~~~i~~a~~~~~~ 99 (219)
T TIGR02021 35 REGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDISEQMVQMARNRAQG 99 (219)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECCHHHHHHHHHHHHh
Confidence 3456666777777776 2456799999999985 555666542 4899999998888877777653
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.37 E-value=6.3 Score=39.79 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=39.9
Q ss_pred HHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEc
Q 011736 146 QAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFN 221 (478)
Q Consensus 146 qAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~ 221 (478)
+.+++++.--+.-+|+|+|.|.|. +...|+.+ | .++|||+.+...++.+.++ |+..++.+++.
T Consensus 110 ~~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~--g---~~V~avD~s~~ai~~~~~~----~~~~~l~v~~~ 172 (287)
T PRK12335 110 SEVLEAVQTVKPGKALDLGCGQGR----NSLYLALL--G---FDVTAVDINQQSLENLQEI----AEKENLNIRTG 172 (287)
T ss_pred HHHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC--C---CEEEEEECCHHHHHHHHHH----HHHcCCceEEE
Confidence 345555432222389999999997 33445554 3 5899999998877765444 44556765553
No 30
>PRK05785 hypothetical protein; Provisional
Probab=86.23 E-value=15 Score=35.80 Aligned_cols=72 Identities=10% Similarity=0.072 Sum_probs=43.6
Q ss_pred eeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccCCccccC
Q 011736 157 MVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLR 236 (478)
Q Consensus 157 ~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L~ 236 (478)
.-.|+|+|.|.|.-.. .|+.+. + .+||||+.+.+.|+....+ .++ +....+++..
T Consensus 52 ~~~VLDlGcGtG~~~~----~l~~~~-~---~~v~gvD~S~~Ml~~a~~~---------~~~----~~~d~~~lp~---- 106 (226)
T PRK05785 52 PKKVLDVAAGKGELSY----HFKKVF-K---YYVVALDYAENMLKMNLVA---------DDK----VVGSFEALPF---- 106 (226)
T ss_pred CCeEEEEcCCCCHHHH----HHHHhc-C---CEEEEECCCHHHHHHHHhc---------cce----EEechhhCCC----
Confidence 3479999999995433 344442 1 4899999999888765432 111 2223333322
Q ss_pred CCCCeEEEEeccccccc
Q 011736 237 KTGEALAVSSVLQMHRL 253 (478)
Q Consensus 237 ~~gEalaVn~~~~Lh~L 253 (478)
.++..=+|.|.+.|||+
T Consensus 107 ~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 107 RDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCCEEEEEecChhhcc
Confidence 23334467777788886
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=86.14 E-value=6.1 Score=38.96 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=38.3
Q ss_pred HHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 147 AIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 147 AILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
.|++.+. .+.-+|+|+|.|.|. +...|+.+ | .++|+|+.+.+.++.+.+++.+
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~--g---~~v~~vD~s~~~l~~a~~~~~~ 88 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL--G---HQVILCDLSAEMIQRAKQAAEA 88 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc--C---CEEEEEECCHHHHHHHHHHHHh
Confidence 4666665 344699999999994 45556655 2 5899999998888877666543
No 32
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=85.64 E-value=1.7 Score=34.67 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=43.7
Q ss_pred eecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccCCccccCCCCC
Q 011736 161 IDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLRKTGE 240 (478)
Q Consensus 161 IDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L~~~gE 240 (478)
+|+|.|.|.....|.+. +-.++|+++.+.+.++.+.+++.. .++++.. ...+++.. .++-
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~----~d~~~l~~----~~~s 60 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLKN----EGVSFRQ----GDAEDLPF----PDNS 60 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTTT----STEEEEE----SBTTSSSS-----TT-
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhcccc----cCchhee----ehHHhCcc----cccc
Confidence 58899988777666655 348999999998877766665542 3344222 22333321 3344
Q ss_pred eEEEEeccccccc
Q 011736 241 ALAVSSVLQMHRL 253 (478)
Q Consensus 241 alaVn~~~~Lh~L 253 (478)
.=+|-|...+||+
T Consensus 61 fD~v~~~~~~~~~ 73 (95)
T PF08241_consen 61 FDVVFSNSVLHHL 73 (95)
T ss_dssp EEEEEEESHGGGS
T ss_pred ccccccccceeec
Confidence 4477777788887
No 33
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=84.30 E-value=3.1 Score=41.36 Aligned_cols=53 Identities=26% Similarity=0.301 Sum_probs=39.8
Q ss_pred HHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 149 VEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 149 LEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
|.-+.-+..-.|+|+|.|-|.+= +-|++|= |--.||||+.+.+.|+++.++|-
T Consensus 23 la~Vp~~~~~~v~DLGCGpGnsT----elL~~Rw---P~A~i~GiDsS~~Mla~Aa~rlp 75 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNST----ELLARRW---PDAVITGIDSSPAMLAKAAQRLP 75 (257)
T ss_pred HhhCCccccceeeecCCCCCHHH----HHHHHhC---CCCeEeeccCCHHHHHHHHHhCC
Confidence 34455566778999999999764 4455554 55789999999999988777664
No 34
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=82.99 E-value=16 Score=39.34 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=32.7
Q ss_pred HHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHH
Q 011736 146 QAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQ 202 (478)
Q Consensus 146 qAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~ 202 (478)
..|++.+...+.-+|+|+|.|.|.--.. |+.+. -+||||+.+...++.
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~----la~~~-----~~v~giD~s~~~l~~ 74 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGE----LAKKA-----GQVIALDFIESVIKK 74 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHH----HHhhC-----CEEEEEeCCHHHHHH
Confidence 4555666544444899999999955444 44442 279999998887764
No 35
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=81.32 E-value=18 Score=34.03 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=30.9
Q ss_pred HHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHH
Q 011736 147 AIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQM 203 (478)
Q Consensus 147 AILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~t 203 (478)
.|.+.+... -+|+|+|.|.|. ++..|+.+. + .+++||+.+.+.++.+
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~-~---~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEK-Q---VRGYGIEIDQDGVLAC 52 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhcc-C---CcEEEEeCCHHHHHHH
Confidence 455555433 379999999995 456666543 1 3579999887766543
No 36
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=80.85 E-value=0.76 Score=38.13 Aligned_cols=43 Identities=30% Similarity=0.382 Sum_probs=32.0
Q ss_pred eecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 011736 161 IDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEE 210 (478)
Q Consensus 161 IDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~f 210 (478)
+|+|.|.|.==..|++.+ |..++|+++.+...++.+.+++.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~l~~a~~~~~~~ 43 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSMLERARERLAEL 43 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHHHC
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhhhc
Confidence 588888887777777776 7899999999988887777776653
No 37
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=80.44 E-value=14 Score=38.21 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=33.5
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
+...|+|+|.|.|. +...|+.+ | .+||||+-+...++...++..
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~--g---~~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE--G---AIVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC--C---CEEEEEECCHHHHHHHHHHHH
Confidence 45689999999987 44555554 3 489999999998888777654
No 38
>PLN02244 tocopherol O-methyltransferase
Probab=79.06 E-value=29 Score=36.06 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=46.3
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCC--ceEEcccccccccCCcc
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDI--PFQFNPIVSKLENVDLE 233 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgv--pFeF~~V~~~~e~l~~~ 233 (478)
+.-+|+|+|.|.|. +...|+.+- | .++|||+.+...++.+.++ ++..|+ ..+|.. ...+++..
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~-g---~~v~gvD~s~~~i~~a~~~----~~~~g~~~~v~~~~--~D~~~~~~- 182 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKY-G---ANVKGITLSPVQAARANAL----AAAQGLSDKVSFQV--ADALNQPF- 182 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhc-C---CEEEEEECCHHHHHHHHHH----HHhcCCCCceEEEE--cCcccCCC-
Confidence 34579999999986 445556543 2 4899999987766655443 333354 244432 22222211
Q ss_pred ccCCCCCeEEEEeccccccc
Q 011736 234 SLRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 234 ~L~~~gEalaVn~~~~Lh~L 253 (478)
.++..=+|-|...+||+
T Consensus 183 ---~~~~FD~V~s~~~~~h~ 199 (340)
T PLN02244 183 ---EDGQFDLVWSMESGEHM 199 (340)
T ss_pred ---CCCCccEEEECCchhcc
Confidence 22333356667778887
No 39
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=78.28 E-value=6.5 Score=35.40 Aligned_cols=52 Identities=25% Similarity=0.345 Sum_probs=34.6
Q ss_pred hcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHH
Q 011736 152 MEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALR 206 (478)
Q Consensus 152 ~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~r 206 (478)
-...+..+|||||-|.|.==..|-..|... .|.++|++|+.+....+..-.+
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCcHHHHHHHHH
Confidence 345789999999999885333333333323 2779999999887655444333
No 40
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=77.48 E-value=63 Score=31.48 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHH
Q 011736 142 VITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALR 206 (478)
Q Consensus 142 ~tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~r 206 (478)
...-+.+++.+...+.-+|+|+|.|.|. +.+.|+.+ | -++|+|+.+.+.++...++
T Consensus 28 ~~~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~--~---~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 28 RQSADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER--G---SQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc--C---CeEEEEECCHHHHHHHHhh
Confidence 3344556666654445579999999994 55666654 2 4899999998877665544
No 41
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=75.63 E-value=35 Score=35.50 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=52.9
Q ss_pred HHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCc-eEEccccc
Q 011736 147 AIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIP-FQFNPIVS 225 (478)
Q Consensus 147 AILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvp-FeF~~V~~ 225 (478)
.|..++. ....|||||.|.|..=..||++|..+. ...+-.+|+-+.+.|+++.++|.. -..| +++.+|..
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~---~~~~Y~plDIS~~~L~~a~~~L~~----~~~p~l~v~~l~g 139 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQK---KSVDYYALDVSRSELQRTLAELPL----GNFSHVRCAGLLG 139 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcC---CCceEEEEECCHHHHHHHHHhhhh----ccCCCeEEEEEEe
Confidence 4444443 224799999999999999999997432 236789999999999999999971 1355 77777764
Q ss_pred c
Q 011736 226 K 226 (478)
Q Consensus 226 ~ 226 (478)
.
T Consensus 140 d 140 (319)
T TIGR03439 140 T 140 (319)
T ss_pred c
Confidence 3
No 42
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=75.39 E-value=20 Score=36.31 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=40.5
Q ss_pred HHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEc
Q 011736 146 QAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFN 221 (478)
Q Consensus 146 qAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~ 221 (478)
..|+|.+.=++-=||+|+|.| |=.+...+|++- | .++|||..+.+-.+.+.++ ++..|++-...
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~-g---~~v~gitlS~~Q~~~a~~~----~~~~gl~~~v~ 115 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERY-G---CHVTGITLSEEQAEYARER----IREAGLEDRVE 115 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HHHHHHHHHH----HHCSTSSSTEE
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHc-C---cEEEEEECCHHHHHHHHHH----HHhcCCCCceE
Confidence 456676654455589999776 778888898885 3 7999999987766655444 44567763333
No 43
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=74.87 E-value=33 Score=35.54 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=31.4
Q ss_pred HHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHH
Q 011736 146 QAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQ 202 (478)
Q Consensus 146 qAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~ 202 (478)
.+|++.+...+.=+|+|+|.|.|. ++..++.+ |+- +++||+.+...+.+
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~~--~v~GiDpS~~ml~q 159 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GAK--SLVGIDPTVLFLCQ 159 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CCC--EEEEEcCCHHHHHH
Confidence 345555443333489999999997 33444433 432 78999998876654
No 44
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=74.77 E-value=57 Score=31.09 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=33.4
Q ss_pred eEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCc-eEE
Q 011736 158 VHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIP-FQF 220 (478)
Q Consensus 158 VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvp-FeF 220 (478)
-.|+|+|.|.|..=..+.+ +. |..++|+|+.+.+.++.+.+++. ..|++ ++|
T Consensus 47 ~~VLDiGcGtG~~al~la~----~~---~~~~V~giD~s~~~l~~A~~~~~----~~~l~~i~~ 99 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAI----AR---PELKVTLVDSLGKKIAFLREVAA----ELGLKNVTV 99 (187)
T ss_pred CeEEEEcCCCCHHHHHHHH----HC---CCCeEEEEeCcHHHHHHHHHHHH----HcCCCCEEE
Confidence 4699999999943222222 21 34699999999887777665544 34554 444
No 45
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=74.23 E-value=26 Score=35.38 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhc----CCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 140 SYVITNQAIVEAME----GEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 140 a~~tANqAILEA~~----g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
+++++-..||+.+. +-+--+|+|||.|-|.-=-+..+.+ +-...+|.|+.+...+ ++|++|.+
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~------~~~~~~~~vd~s~~~~-~l~~~l~~ 79 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVW------PSLKEYTCVDRSPEML-ELAKRLLR 79 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHh------cCceeeeeecCCHHHH-HHHHHHHh
Confidence 45666667777664 3455699999998775322222322 2237899999887755 57777765
No 46
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=73.83 E-value=25 Score=36.74 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=51.2
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhC---CCceEEcccccccccCCc
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKL---DIPFQFNPIVSKLENVDL 232 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~l---gvpFeF~~V~~~~e~l~~ 232 (478)
...+|+|++.|.|.=-.--.. .+ -=++.||+.+.+.++++.+|..+.-+.. ...+.|.......+....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~---~~-----i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~ 133 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK---AK-----IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE 133 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH---TT------SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS
T ss_pred CCCeEEEecCCCchhHHHHHh---cC-----CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc
Confidence 678999999998863222222 22 2467899999999999999985554321 223334322111111111
Q ss_pred --c-ccC-CCCCeEEEEeccccccccC
Q 011736 233 --E-SLR-KTGEALAVSSVLQMHRLLA 255 (478)
Q Consensus 233 --~-~L~-~~gEalaVn~~~~Lh~Ll~ 255 (478)
. .+. .....=+|+|+|.||+...
T Consensus 134 ~l~~~~~~~~~~FDvVScQFalHY~Fe 160 (331)
T PF03291_consen 134 SLREKLPPRSRKFDVVSCQFALHYAFE 160 (331)
T ss_dssp HHHCTSSSTTS-EEEEEEES-GGGGGS
T ss_pred hhhhhccccCCCcceeehHHHHHHhcC
Confidence 1 122 2346669999999999973
No 47
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=71.90 E-value=40 Score=34.64 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCc
Q 011736 141 YVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIP 217 (478)
Q Consensus 141 ~~tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvp 217 (478)
.+..=..|++-+.=+.--||+|||.| |=.|+.-.|++- | .++|||+.+.+-++...+++.+ .|++
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y-~---v~V~GvTlS~~Q~~~~~~r~~~----~gl~ 121 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEY-G---VTVVGVTLSEEQLAYAEKRIAA----RGLE 121 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHc-C---CEEEEeeCCHHHHHHHHHHHHH----cCCC
Confidence 34444566666665677899999655 889999999886 3 8999999998877776666553 4665
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=71.49 E-value=39 Score=31.87 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=35.5
Q ss_pred eEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccC
Q 011736 158 VHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENV 230 (478)
Q Consensus 158 VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l 230 (478)
-+|+|+|.|.|.-=..| +... |..++|+|+.+...++.+.+++ ++.|++ .+..+...++++
T Consensus 44 ~~vLDiGcGtG~~s~~l----a~~~---~~~~V~~iD~s~~~~~~a~~~~----~~~~~~-~i~~i~~d~~~~ 104 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPL----AIAR---PELKLTLLESNHKKVAFLREVK----AELGLN-NVEIVNGRAEDF 104 (181)
T ss_pred CeEEEecCCCCccHHHH----HHHC---CCCeEEEEeCcHHHHHHHHHHH----HHhCCC-CeEEEecchhhc
Confidence 48999999999422221 2111 3468999999987766555444 345654 233333444443
No 49
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=71.16 E-value=95 Score=29.37 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=29.7
Q ss_pred eeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 157 MVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 157 ~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
...|+|+|.|.|. +...++.. + .++|+|+.+...++....++.
T Consensus 46 ~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s~~~~~~a~~~~~ 88 (224)
T TIGR01983 46 GLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDASEENIEVAKLHAK 88 (224)
T ss_pred CCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCCHHHHHHHHHHHH
Confidence 5689999999884 33344443 2 249999998887777666554
No 50
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=69.50 E-value=60 Score=31.39 Aligned_cols=88 Identities=20% Similarity=0.178 Sum_probs=54.9
Q ss_pred HHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEccccc
Q 011736 146 QAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVS 225 (478)
Q Consensus 146 qAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~ 225 (478)
..|++|++--+.-.++|+|.|.|.== --||++. ..+|+|+.+...++. |.+.|+.-+++++....
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRNa----lyLA~~G-----~~VtAvD~s~~al~~----l~~~a~~~~l~i~~~~~-- 84 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRNA----LYLASQG-----FDVTAVDISPVALEK----LQRLAEEEGLDIRTRVA-- 84 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHHH----HHHHHTT------EEEEEESSHHHHHH----HHHHHHHTT-TEEEEE---
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHHH----HHHHHCC-----CeEEEEECCHHHHHH----HHHHHhhcCceeEEEEe--
Confidence 45777777666678999999998632 2355553 899999999777665 56677888888666532
Q ss_pred ccccCCccccCCCCCeEEEEeccccccc
Q 011736 226 KLENVDLESLRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 226 ~~e~l~~~~L~~~gEalaVn~~~~Lh~L 253 (478)
.+++.++ +++.=+|.+...+|+|
T Consensus 85 Dl~~~~~-----~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 85 DLNDFDF-----PEEYDFIVSTVVFMFL 107 (192)
T ss_dssp BGCCBS------TTTEEEEEEESSGGGS
T ss_pred cchhccc-----cCCcCEEEEEEEeccC
Confidence 3333222 2333356676778888
No 51
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=68.70 E-value=22 Score=35.76 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=54.8
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccCCcccc
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESL 235 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L 235 (478)
...-|+|+|.|.| .|-+.+|+.. ..+|||+.+...++.+.. .|.+-|+..+|... ..|+|...
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~G-----a~VtgiD~se~~I~~Ak~----ha~e~gv~i~y~~~--~~edl~~~-- 121 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARLG-----ASVTGIDASEKPIEVAKL----HALESGVNIDYRQA--TVEDLASA-- 121 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHCC-----CeeEEecCChHHHHHHHH----hhhhccccccchhh--hHHHHHhc--
Confidence 3467899999988 7788888874 999999998887765533 45566777666653 23333221
Q ss_pred CCCCCeEEEEeccccccc
Q 011736 236 RKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 236 ~~~gEalaVn~~~~Lh~L 253 (478)
.+-.=+|.|+=-|+|+
T Consensus 122 --~~~FDvV~cmEVlEHv 137 (243)
T COG2227 122 --GGQFDVVTCMEVLEHV 137 (243)
T ss_pred --CCCccEEEEhhHHHcc
Confidence 1233388899889998
No 52
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=68.52 E-value=63 Score=31.92 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=29.6
Q ss_pred eEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 158 VHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 158 VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
=+|+|+|.|.|.-...+.+.. | +.-+||+|+.+.+.++.+.++..
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~-----g-~~~~v~gvD~s~~~l~~A~~~~~ 123 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRV-----G-PTGKVIGVDMTPEMLAKARANAR 123 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHh-----C-CCCEEEEECCCHHHHHHHHHHHH
Confidence 389999999874322222211 2 34589999999887777666543
No 53
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=67.98 E-value=57 Score=34.64 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHH
Q 011736 145 NQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRL 207 (478)
Q Consensus 145 NqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL 207 (478)
-..|++.+.-...=+|+|+|.|.|. +...++.+.+ .+||||+.+.+.++.+.++.
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~~~l~~A~~~~ 210 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISAEQQKLAQERC 210 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCHHHHHHHHHHh
Confidence 3456665543344589999998775 4444555432 48999999988887776665
No 54
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=67.86 E-value=38 Score=32.86 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=29.5
Q ss_pred HHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCH
Q 011736 146 QAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQK 197 (478)
Q Consensus 146 qAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~ 197 (478)
..++++..=.+.-+|||+|-|.|..= .+|+.+- |+||+|..+.+.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~----~~l~~~~---P~l~~~v~Dlp~ 134 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFA----IALARAY---PNLRATVFDLPE 134 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHH----HHHHHHS---TTSEEEEEE-HH
T ss_pred hhhhccccccCccEEEeccCcchHHH----HHHHHHC---CCCcceeeccHh
Confidence 45566665555568999999999443 3444333 789999998864
No 55
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=67.17 E-value=67 Score=33.23 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=28.3
Q ss_pred HHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHH
Q 011736 147 AIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLE 201 (478)
Q Consensus 147 AILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~ 201 (478)
.|++.+..-+.-+|+|+|.|.|..= ..++.+ |+- +++||+.+...+.
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~----~~la~~--g~~--~V~GiD~S~~~l~ 159 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHM----WRMLGA--GAK--LVVGIDPSQLFLC 159 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHH----HHHHHc--CCC--EEEEEcCCHHHHH
Confidence 3444543222247999999998542 234444 322 5999998876553
No 56
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=65.85 E-value=32 Score=32.79 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=30.4
Q ss_pred EEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 159 HIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 159 HIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
+|+|+|.|.|. +...++.+- |..++|||+.+.+.++...+++.
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~~~~~a~~~~~ 44 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPEQAEVGRERIR 44 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 68999999886 233445443 34689999998887777666653
No 57
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=65.78 E-value=37 Score=36.16 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 011736 146 QAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEE 210 (478)
Q Consensus 146 qAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~f 210 (478)
+.+++.+.....=+|+|+|.|.|. +--.|+.+. |..+||+|+.+...++.+.+++...
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~Av~~A~~N~~~n 275 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPMAVASSRLNVETN 275 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHc
Confidence 445555543222279999999997 334455543 6689999999998888887776543
No 58
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=65.27 E-value=42 Score=33.45 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHH
Q 011736 120 ITEEIIVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEV 199 (478)
Q Consensus 120 ~~~~~~a~~~f~~~~P~~kfa~~tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~ 199 (478)
..+.+.+++.|.+.-=|-.+... .++.|.+.+. .+.-+|+|+|.|.|.--..|.+.+... ....++||+.+...
T Consensus 51 ~~~~~~ar~~fl~~g~y~~l~~~-i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~~~ 124 (272)
T PRK11088 51 NKEMMQARRAFLDAGHYQPLRDA-VANLLAERLD-EKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISKVA 124 (272)
T ss_pred CHHHHHHHHHHHHCCChHHHHHH-HHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCHHH
Confidence 45566777777654322222222 2223333332 344679999999997554554444221 12579999999887
Q ss_pred HHHHHHH
Q 011736 200 LEQMALR 206 (478)
Q Consensus 200 L~~tg~r 206 (478)
++.+.++
T Consensus 125 l~~A~~~ 131 (272)
T PRK11088 125 IKYAAKR 131 (272)
T ss_pred HHHHHHh
Confidence 7765443
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=64.57 E-value=24 Score=29.66 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=31.1
Q ss_pred EEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 159 HIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 159 HIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
+|+|+|.|.|..=.. |+.+. |..++|+|+.+...++.+.+++.+
T Consensus 22 ~vldlG~G~G~~~~~----l~~~~---~~~~v~~vD~s~~~~~~a~~~~~~ 65 (124)
T TIGR02469 22 VLWDIGAGSGSITIE----AARLV---PNGRVYAIERNPEALRLIERNARR 65 (124)
T ss_pred EEEEeCCCCCHHHHH----HHHHC---CCceEEEEcCCHHHHHHHHHHHHH
Confidence 899999998765333 33332 337899999998877777666544
No 60
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=62.76 E-value=70 Score=30.36 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=32.0
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
+.-.|+|+|.|.|.-- ..|+.+ + .++|+|+.+...++.+.+++.+
T Consensus 63 ~~~~vLDvGcG~G~~~----~~l~~~--~---~~v~~~D~s~~~i~~a~~~~~~ 107 (230)
T PRK07580 63 TGLRILDAGCGVGSLS----IPLARR--G---AKVVASDISPQMVEEARERAPE 107 (230)
T ss_pred CCCEEEEEeCCCCHHH----HHHHHc--C---CEEEEEECCHHHHHHHHHHHHh
Confidence 4568999999999643 344443 2 3499999998888877766543
No 61
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=62.76 E-value=1.5e+02 Score=28.43 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=35.2
Q ss_pred CceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEc
Q 011736 155 EKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFN 221 (478)
Q Consensus 155 ~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~ 221 (478)
.+..+|+|+|.|.|.- ...++.+ + .++|+|+.+...++.+.+++.. .++..+|.
T Consensus 47 ~~~~~vLdiG~G~G~~----~~~l~~~--~---~~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~ 100 (233)
T PRK05134 47 LFGKRVLDVGCGGGIL----SESMARL--G---ADVTGIDASEENIEVARLHALE----SGLKIDYR 100 (233)
T ss_pred CCCCeEEEeCCCCCHH----HHHHHHc--C---CeEEEEcCCHHHHHHHHHHHHH----cCCceEEE
Confidence 3456899999998863 2344443 2 4699999988877776665532 34444443
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=58.19 E-value=24 Score=36.92 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=44.3
Q ss_pred HHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEc
Q 011736 145 NQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFN 221 (478)
Q Consensus 145 NqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~ 221 (478)
.+.+++.+.....=+|+|||.|.|. +-..++.+. |..++|+|+.+...++.+.+++.+ .++..+|.
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~Al~~A~~nl~~----n~l~~~~~ 250 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAAALESSRATLAA----NGLEGEVF 250 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHH----cCCCCEEE
Confidence 3455665653323379999999997 334455442 457899999999989888777654 35555543
No 63
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=57.75 E-value=1.4e+02 Score=32.23 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 011736 323 MGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKN 395 (478)
Q Consensus 323 ~~~~L~~ir~L~P~vvvlvE~ea~hn~~~F~~RF~eaL~yYsalfDsLda~l~~~~~eR~~iE~~~lg~eI~n 395 (478)
++--...|...+|..|+..|.+ |..+++.+=.+...| ...-|...++.-.||...=.+-+++.+.+
T Consensus 189 ~elk~~li~~ikP~~Ii~l~~~---~~~~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 189 LELKRALIDAIKPDLIIALERA---NELSPLLEGVESIVY----LKVPDAVAPRSREERKELREEKYRRYFEG 254 (398)
T ss_pred HHHHHHHHhhcCCCEEEEeccc---cccchhhhcccCceE----EeccccccccChhHHHHHHHHHHHHhccC
Confidence 3455667889999999999876 334434443344433 33334444555566665533345555554
No 64
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=57.37 E-value=1.6e+02 Score=30.73 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=55.8
Q ss_pred cCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCc--eEEcccccccccC
Q 011736 153 EGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIP--FQFNPIVSKLENV 230 (478)
Q Consensus 153 ~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvp--FeF~~V~~~~e~l 230 (478)
+..+.|||+|+-.|+|. -++++|..-|..|-+++ -.+-+...+ +-|+.|.+ +.|+. ++|+. -+.+
T Consensus 132 ~~g~pvrIlDIAaG~GR---YvlDal~~~~~~~~~i~--LrDys~~Nv-~~g~~li~---~~gL~~i~~f~~----~dAf 198 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGR---YVLDALEKHPERPDSIL--LRDYSPINV-EKGRALIA---ERGLEDIARFEQ----GDAF 198 (311)
T ss_pred hcCCceEEEEeccCCcH---HHHHHHHhCCCCCceEE--EEeCCHHHH-HHHHHHHH---HcCCccceEEEe----cCCC
Confidence 34588999999999996 48999998887655544 344444433 45666664 44553 35553 3345
Q ss_pred CccccC--CCCCeEEEEeccccccccC
Q 011736 231 DLESLR--KTGEALAVSSVLQMHRLLA 255 (478)
Q Consensus 231 ~~~~L~--~~gEalaVn~~~~Lh~Ll~ 255 (478)
+.+++. .+.-.|+|.| .|+-|+.
T Consensus 199 d~~~l~~l~p~P~l~iVs--GL~ElF~ 223 (311)
T PF12147_consen 199 DRDSLAALDPAPTLAIVS--GLYELFP 223 (311)
T ss_pred CHhHhhccCCCCCEEEEe--cchhhCC
Confidence 566665 4445677766 5677763
No 65
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=57.10 E-value=1.5e+02 Score=31.33 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=29.0
Q ss_pred EEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 159 HIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 159 HIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
+|+|++.|.|. +--.|+.+ + -+++||+-+...++.+.+++.
T Consensus 236 ~vLDL~cG~G~----~~l~la~~--~---~~v~~vE~~~~av~~a~~N~~ 276 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP--D---TQLTGIEIESEAIACAQQSAQ 276 (374)
T ss_pred EEEEccCCccH----HHHHHhhc--C---CeEEEEECCHHHHHHHHHHHH
Confidence 68999998883 33344433 2 379999999888887776653
No 66
>PRK06922 hypothetical protein; Provisional
Probab=56.80 E-value=65 Score=37.00 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=49.1
Q ss_pred eEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccCCccccCC
Q 011736 158 VHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLRK 237 (478)
Q Consensus 158 VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L~~ 237 (478)
-.|+|+|.|.|. ++..|+.+- |..++|||+.+...++.+.+++. ..+.+++| +.....++. ..+ .
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~~MLe~Ararl~----~~g~~ie~--I~gDa~dLp-~~f-e 484 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISENVIDTLKKKKQ----NEGRSWNV--IKGDAINLS-SSF-E 484 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhh----hcCCCeEE--EEcchHhCc-ccc-C
Confidence 479999999984 345566542 56899999999998888776643 23444444 222222221 001 2
Q ss_pred CCCeEEEEecccccccc
Q 011736 238 TGEALAVSSVLQMHRLL 254 (478)
Q Consensus 238 ~gEalaVn~~~~Lh~Ll 254 (478)
++.+=+|-+.+.+|++.
T Consensus 485 deSFDvVVsn~vLH~L~ 501 (677)
T PRK06922 485 KESVDTIVYSSILHELF 501 (677)
T ss_pred CCCEEEEEEchHHHhhh
Confidence 23333555666788874
No 67
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=56.62 E-value=21 Score=32.99 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 144 TNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 144 ANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
+-..+++.+...+.=+|+|+|.|.|.-=. .|+.+ -|..+||+++-+.+.++.+.+++..
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~----~la~~---~~~~~v~~vDi~~~a~~~a~~n~~~ 77 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVISL----ALAKR---GPDAKVTAVDINPDALELAKRNAER 77 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHHHH----HHHHT---STCEEEEEEESBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHHHH----HHHHh---CCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 44466677765566679999999995333 33333 2678899999998888877666543
No 68
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=56.47 E-value=29 Score=31.91 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=37.2
Q ss_pred HHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 146 QAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 146 qAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
+.|++.+.-...=+|+|+|.|.|. |...|+.+ + -++|+|+.+...++.+.+++.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCHHHHHHHHHHhc
Confidence 346666653333489999999886 44555555 2 489999999887777766653
No 69
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=56.04 E-value=1.2e+02 Score=31.97 Aligned_cols=44 Identities=7% Similarity=0.178 Sum_probs=31.0
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHH
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALR 206 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~r 206 (478)
...+|+|+|.|.|.-...+.+ +-++ .++|+|+.+.+.++.+.++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~----~~~~---~~VtgVD~S~~mL~~A~~k 156 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVK----HVDA---KNVTILDQSPHQLAKAKQK 156 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHH----HCCC---CEEEEEECCHHHHHHHHHh
Confidence 456899999999974444433 3212 5899999998877776655
No 70
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=52.95 E-value=1.8e+02 Score=28.02 Aligned_cols=44 Identities=20% Similarity=0.105 Sum_probs=30.1
Q ss_pred eEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 158 VHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 158 VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
-.|+|++.|.|. --+.+|+... -+||+|+.+.+.++.+.+++..
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~a-----~~V~~vE~~~~a~~~a~~Nl~~ 98 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRYA-----AGATLLEMDRAVAQQLIKNLAT 98 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcCC-----CEEEEEECCHHHHHHHHHHHHH
Confidence 368999999883 2334565431 4899999988877766655443
No 71
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=49.78 E-value=20 Score=36.36 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=22.6
Q ss_pred cCCceeEEeecCCCCCcchHHHHHHHhc
Q 011736 153 EGEKMVHIIDLNSFEPAQWINLLQTLSA 180 (478)
Q Consensus 153 ~g~~~VHIIDf~i~~G~QWp~LlqaLa~ 180 (478)
.|.+.+||||||.+.+.+ ..+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999999888888 566777777
No 72
>PRK07402 precorrin-6B methylase; Provisional
Probab=49.18 E-value=51 Score=30.95 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 011736 140 SYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEE 210 (478)
Q Consensus 140 a~~tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~f 210 (478)
..--..+.|++.+.-.+.=.|+|+|.|.|.- . ..++... |.-+||+|+.+.+.++.+.+++.++
T Consensus 24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~-~---~~la~~~---~~~~V~~vD~s~~~~~~a~~n~~~~ 87 (196)
T PRK07402 24 TKREVRLLLISQLRLEPDSVLWDIGAGTGTI-P---VEAGLLC---PKGRVIAIERDEEVVNLIRRNCDRF 87 (196)
T ss_pred CHHHHHHHHHHhcCCCCCCEEEEeCCCCCHH-H---HHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 3444455566666533444699999999972 2 2223221 2258999999988888777776543
No 73
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=49.12 E-value=2.1e+02 Score=26.10 Aligned_cols=57 Identities=16% Similarity=0.083 Sum_probs=30.1
Q ss_pred eEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccCCccccCCCCCeEEEEeccccccc
Q 011736 191 TGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 191 T~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L~~~gEalaVn~~~~Lh~L 253 (478)
|||+.+.+.|+...++....+....-..+|. ....+++.. .++..=+|.+.+.||++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~--~~d~~~lp~----~~~~fD~v~~~~~l~~~ 57 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWI--EGDAIDLPF----DDCEFDAVTMGYGLRNV 57 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEE--EechhhCCC----CCCCeeEEEecchhhcC
Confidence 6899999988887766543222111123332 233333322 22222355567788887
No 74
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=49.05 E-value=36 Score=34.12 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=34.9
Q ss_pred HHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHH
Q 011736 148 IVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRL 207 (478)
Q Consensus 148 ILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL 207 (478)
|++.+.-.+.-+|+|+|.|.|. +...|+.+ ++ ++|+|+.+.+.++.+.+++
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~d~~~~~~~~~~~ 84 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEIDRDLAPILAETF 84 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEECCHHHHHHHHHhh
Confidence 3344443445689999999885 55666666 32 8999999988777665544
No 75
>PRK14968 putative methyltransferase; Provisional
Probab=48.99 E-value=40 Score=30.72 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=32.8
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
+.-.|+|+|.|.|. +...|+.+ + .+||+++.+.+.++.+.+++.
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~--~---~~v~~~D~s~~~~~~a~~~~~ 66 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN--G---KKVVGVDINPYAVECAKCNAK 66 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh--c---ceEEEEECCHHHHHHHHHHHH
Confidence 33469999999998 45555555 2 589999999888877766654
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=48.03 E-value=49 Score=31.56 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=38.9
Q ss_pred HHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 147 AIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 147 AILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
.+++.++-.+.-+|+|+|.|.|..=..|.+.+. +.-++++|+.+.+.++.+.+++.+
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~------~~g~V~~iD~~~~~~~~a~~~l~~ 119 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIE------RRGKVYTVEIVKELAIYAAQNIER 119 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcC------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 455666544445799999999885544444431 113799999998888877777753
No 77
>PRK04148 hypothetical protein; Provisional
Probab=47.80 E-value=95 Score=28.38 Aligned_cols=43 Identities=21% Similarity=0.174 Sum_probs=27.7
Q ss_pred HHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHH
Q 011736 148 IVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKE 198 (478)
Q Consensus 148 ILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~ 198 (478)
|.+....++.-.|+|.|+|.|..- -+.|++. | ..+|+|+-+..
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~v---A~~L~~~--G---~~ViaIDi~~~ 50 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKV---AKKLKES--G---FDVIVIDINEK 50 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHH---HHHHHHC--C---CEEEEEECCHH
Confidence 445555555567999999977543 4455543 3 58888886644
No 78
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=47.06 E-value=50 Score=33.27 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=32.3
Q ss_pred eEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 158 VHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 158 VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
.+|+|+|.|.|.--..|.+.+ |..+||+++.+.+.++.+.+++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-------~~~~v~avDis~~al~~a~~n~~ 159 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-------PNAEVIAVDISPDALAVAEENAE 159 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-------CCCEEEEEECCHHHHHHHHHHHH
Confidence 589999999996554444432 34699999999888877766643
No 79
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=45.88 E-value=56 Score=30.38 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=31.5
Q ss_pred eeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 157 MVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 157 ~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
.-.|+|+|.|.|.- --.++.+ + |..+||+|+.+.+.++.+.++..+
T Consensus 32 ~~~vLDiG~G~G~~----~~~la~~--~-~~~~v~~vD~s~~~~~~a~~n~~~ 77 (187)
T PRK08287 32 AKHLIDVGAGTGSV----SIEAALQ--F-PSLQVTAIERNPDALRLIKENRQR 77 (187)
T ss_pred CCEEEEECCcCCHH----HHHHHHH--C-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 34799999998843 2333333 2 458999999998877776655543
No 80
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=45.72 E-value=35 Score=34.69 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=34.7
Q ss_pred EEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 159 HIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 159 HIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
||+|+|.|.|+.=..|.... |..+|+|++-+.+.|+-+.++...
T Consensus 113 ~ilDlGTGSG~iai~la~~~-------~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-------PDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-------cCCeEEEEECCHHHHHHHHHHHHH
Confidence 99999999998665555444 558999999999988887776544
No 81
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=43.68 E-value=58 Score=31.99 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=34.8
Q ss_pred cCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 153 EGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 153 ~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
...+..+|+|+|.|.|.=-..|.+.+ |..++|+++.+...++.+.+++.
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~-------~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER-------PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC-------CCCEEEEEECCHHHHHHHHHHHH
Confidence 34456789999999996444443333 45789999999888877776655
No 82
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=43.38 E-value=47 Score=31.69 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=35.0
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
+.-.|+|+|.|.|.-...|.+.+ |.-+||+|+.+.+.++.+.+++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-------p~~~v~gVD~s~~~i~~a~~~~~~ 86 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-------PDINFIGIEVHEPGVGKALKKIEE 86 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-------CCccEEEEEechHHHHHHHHHHHH
Confidence 44579999999997766554432 446899999998888877766643
No 83
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=41.88 E-value=67 Score=29.67 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=31.9
Q ss_pred EEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 159 HIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 159 HIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
.|+|+|.|.|. +...++.+ ++ ++|+|+.+.+.++.+.+++.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s~~~~~~a~~~~~ 62 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDINPFAVKELRENAK 62 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECCHHHHHHHHHHHH
Confidence 49999999994 45556654 33 89999999998888877775
No 84
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=41.81 E-value=48 Score=34.32 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 143 ITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 143 tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
..-+.+||-+.....-+|+|||.|+|.==.. |+.+. |..+||-++-+...++-..+.|..
T Consensus 145 ~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~----la~~~---p~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 145 KGSRLLLETLPPDLGGKVLDLGCGYGVLGLV----LAKKS---PQAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred hHHHHHHHhCCccCCCcEEEeCCCccHHHHH----HHHhC---CCCeEEEEecCHHHHHHHHHhHHH
Confidence 3567889999877666999999999864333 33332 689999999998888887777764
No 85
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=41.08 E-value=58 Score=37.05 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=57.2
Q ss_pred CCCCC-cchHHHHHHHhc---CCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccccccCCccccC--C
Q 011736 164 NSFEP-AQWINLLQTLSA---RPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVDLESLR--K 237 (478)
Q Consensus 164 ~i~~G-~QWp~LlqaLa~---R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L~--~ 237 (478)
|+..| -||-+|.++|.. +.++.|.+.|+..++..+.. |.+-|.+.|+..|++-+|.. .+++|..+.=+ .
T Consensus 354 g~~~~~dq~n~L~e~Lv~aw~~~~~~~~vhf~~~~d~eED~--T~~YL~d~a~qAG~~t~~~~---~iedL~~d~~G~~~ 428 (619)
T PRK10507 354 YKGNGHNPAEGLINELAGAWKHSRARPFVHIMQDKDIEENY--HAQFMQQALHQAGFETKILR---GLDELRWDAAGQLI 428 (619)
T ss_pred CCCCcccHHHHHHHHHHHHHHhcCCCCcEEEEECCCCCcHH--HHHHHHHHHHHCCCceEEec---CHHHeEECCCCcEE
Confidence 34443 688888777754 23344789999887765544 66779999999999998873 23444433112 3
Q ss_pred CCCeEEEEeccccccc
Q 011736 238 TGEALAVSSVLQMHRL 253 (478)
Q Consensus 238 ~gEalaVn~~~~Lh~L 253 (478)
++|...|.++|+|+..
T Consensus 429 D~dg~~I~~vfKlyPW 444 (619)
T PRK10507 429 DGDGRLVNCVWKTWAW 444 (619)
T ss_pred CCCCCEeeeeeecccH
Confidence 4456789999998865
No 86
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=36.94 E-value=55 Score=33.84 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=36.4
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHH
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRL 207 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL 207 (478)
+.-||.|+|.|.|.==.+|+..|. .-|+|+|+.++..+.-++++-
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-------~~~v~AiD~S~~Ai~La~eN~ 192 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-------QCTVTAIDVSKAAIKLAKENA 192 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-------CceEEEEeccHHHHHHHHHHH
Confidence 445899999999998788887773 489999999988777776653
No 87
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=36.89 E-value=71 Score=31.49 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhcC--CceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 140 SYVITNQAIVEAMEG--EKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 140 a~~tANqAILEA~~g--~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
++..+.+..+++++. .+.-.|+|+|.|.|. |.-.++.. |+. +|+||+.+...++.+.+++.
T Consensus 101 g~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~----l~i~~~~~--g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 101 GTHPTTRLCLEALEKLVLPGKTVLDVGCGSGI----LAIAAAKL--GAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHH----HHHHHHHc--CCC--eEEEEECCHHHHHHHHHHHH
Confidence 344445556666652 244579999999884 23334433 433 59999999888888777654
No 88
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=36.20 E-value=82 Score=31.05 Aligned_cols=53 Identities=25% Similarity=0.212 Sum_probs=36.4
Q ss_pred HHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHH
Q 011736 146 QAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRL 207 (478)
Q Consensus 146 qAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL 207 (478)
+.|++++...+.=.|+|+|.|.|. |...|+.+. + ++++|+.+.+.++.+.+++
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d~~~~~~l~~~~ 71 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEIDPRLAEILRKLL 71 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECCHHHHHHHHHHh
Confidence 455555554555689999999997 555666553 2 3999999887776655444
No 89
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=36.11 E-value=4.2e+02 Score=25.77 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=27.0
Q ss_pred eeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHH
Q 011736 157 MVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQ 202 (478)
Q Consensus 157 ~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~ 202 (478)
.-.|+|.|.|.|.- +..||.+. ..+|||+.+...++.
T Consensus 38 ~~rvL~~gCG~G~d----a~~LA~~G-----~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 38 GSRVLVPLCGKSLD----MLWLAEQG-----HEVLGVELSELAVEQ 74 (218)
T ss_pred CCeEEEeCCCChHh----HHHHHhCC-----CeEEEEccCHHHHHH
Confidence 34789999888842 34456553 789999999887775
No 90
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=35.54 E-value=3.1e+02 Score=26.56 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=26.5
Q ss_pred eEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHH
Q 011736 158 VHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQ 202 (478)
Q Consensus 158 VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~ 202 (478)
=.|+|+|.|.|.- ...||.+ | ..+|||+-+...++.
T Consensus 36 ~rvLd~GCG~G~d----a~~LA~~--G---~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 36 ARVFVPLCGKSLD----LAWLAEQ--G---HRVLGVELSEIAVEQ 71 (213)
T ss_pred CeEEEeCCCchhH----HHHHHhC--C---CeEEEEeCCHHHHHH
Confidence 4899999988842 3345555 3 789999999887774
No 91
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=35.24 E-value=1e+02 Score=32.17 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=35.4
Q ss_pred CCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 154 GEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 154 g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
..+.+.|+|+|.|.|+=-+-| +.|. +..++||++-+...++.+.+.+..
T Consensus 112 ~~~~~~vLDIGtGag~I~~lL----a~~~---~~~~~~atDId~~Al~~A~~Nv~~ 160 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLI----GVHE---YGWRFVGSDIDPQALASAQAIISA 160 (321)
T ss_pred CCCCceEEEecCCccHHHHHH----HhhC---CCCEEEEEeCCHHHHHHHHHHHHh
Confidence 346799999999988544444 3333 247899999998888887776653
No 92
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=34.57 E-value=1e+02 Score=29.41 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=38.1
Q ss_pred HHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 147 AIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 147 AILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
.+++++.=.+.-+|+|+|.|.|..=.. |+.+ .++.-++++|+.+.+.++.+.+++.+
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~----la~~--~~~~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAV----LAEI--VGRDGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHH----HHHH--hCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 455666544556899999998875433 3332 12335899999998888777776654
No 93
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=34.44 E-value=81 Score=29.75 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=33.8
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
+.-.|+|+|.|.|.=... |+.+- |...++||+.+.+.++.+.+++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~----la~~~---p~~~v~gvD~~~~~l~~a~~~~~~ 62 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLID----MAKQN---PDKNFLGIEIHTPIVLAANNKANK 62 (194)
T ss_pred CCceEEEeCCCccHHHHH----HHHhC---CCCCEEEEEeeHHHHHHHHHHHHH
Confidence 334799999998865444 44432 557899999998888877766643
No 94
>PHA03411 putative methyltransferase; Provisional
Probab=34.41 E-value=71 Score=32.80 Aligned_cols=72 Identities=10% Similarity=-0.049 Sum_probs=44.7
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHHhh--cCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHH
Q 011736 127 QKLFFELCPFLKLSYVITNQAIVEAM--EGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMA 204 (478)
Q Consensus 127 ~~~f~~~~P~~kfa~~tANqAILEA~--~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg 204 (478)
+..|..-+ +...+.|++.+.|+..+ .....-+|+|+|.|.|. +...++.+.. ..+||+|+-+...++.+.
T Consensus 34 ~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGi----lsl~la~r~~---~~~V~gVDisp~al~~Ar 105 (279)
T PHA03411 34 YNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGR----LSFCMLHRCK---PEKIVCVELNPEFARIGK 105 (279)
T ss_pred HHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCH----HHHHHHHhCC---CCEEEEEECCHHHHHHHH
Confidence 44444444 55567777777777443 22233479999999994 3333444422 269999999987776554
Q ss_pred HH
Q 011736 205 LR 206 (478)
Q Consensus 205 ~r 206 (478)
++
T Consensus 106 ~n 107 (279)
T PHA03411 106 RL 107 (279)
T ss_pred Hh
Confidence 43
No 95
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=34.11 E-value=71 Score=32.97 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=44.9
Q ss_pred HHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 146 QAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 146 qAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
+.+++++.-...-.+||...|.|..=..+++.+ ||..+|.||+-+.+.++.+.++|.+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~------~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERL------GPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 356677753444479999999998877777655 4457999999999999999988865
No 96
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=34.02 E-value=78 Score=30.41 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=32.0
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
+..+|+|+|.|.|.- ...++.+. |..++|||+.+...++.+.+++.
T Consensus 87 ~~~~ilDig~G~G~~----~~~l~~~~---~~~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 87 GPLRVLDLGTGSGAI----ALALAKER---PDARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred CCCeEEEEeCcHhHH----HHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 345899999999843 33444332 45799999999887777666553
No 97
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=33.72 E-value=88 Score=31.62 Aligned_cols=68 Identities=21% Similarity=0.143 Sum_probs=43.2
Q ss_pred hcchhhhH--HHHHHHHHHHhhc--CCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 133 LCPFLKLS--YVITNQAIVEAME--GEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 133 ~~P~~kfa--~~tANqAILEA~~--g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
+-|-.-|+ +..+.+..++.++ ..+.-.|+|+|.|.|. |...++.. |. -++++|+.+...++.+.+++.
T Consensus 132 ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~--g~--~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 132 LDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL--GA--AKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred ECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc--CC--CeEEEEECCHHHHHHHHHHHH
Confidence 34444443 4455566666654 2234579999999985 33344443 22 389999999888888776654
No 98
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=33.15 E-value=42 Score=33.93 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=18.3
Q ss_pred cCCceeEEeecCCCCCcchHHHHHHHhcC
Q 011736 153 EGEKMVHIIDLNSFEPAQWINLLQTLSAR 181 (478)
Q Consensus 153 ~g~~~VHIIDf~i~~G~QWp~LlqaLa~R 181 (478)
.|.+.+||||| +.+ +. .+|..+...
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~ 74 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHA 74 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHh
Confidence 58999999999 555 66 556666554
No 99
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=33.09 E-value=1.2e+02 Score=29.42 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=37.7
Q ss_pred HhhcCCceeEEeecCCCCC---cchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 011736 150 EAMEGEKMVHIIDLNSFEP---AQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEE 210 (478)
Q Consensus 150 EA~~g~~~VHIIDf~i~~G---~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~f 210 (478)
-+++=.+.=|++|+|.|.| ++|. + -.|+.|+++|+.+.+.++.+.++..+|
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a-~---------~~p~~~v~AIe~~~~a~~~~~~N~~~f 81 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWA-L---------AGPSGRVIAIERDEEALELIERNAARF 81 (187)
T ss_pred HhhCCCCCCEEEEeCCCccHHHHHHH-H---------hCCCceEEEEecCHHHHHHHHHHHHHh
Confidence 3444333349999998876 4554 1 247899999999999999998888776
No 100
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=32.91 E-value=75 Score=30.53 Aligned_cols=89 Identities=10% Similarity=0.080 Sum_probs=58.0
Q ss_pred ceeEEeecCCC---CCcchHHHHHHHhcCCCCCCeEEE------eEecCCHHHHHHHHHHHHHHHHhCCCceEEcccccc
Q 011736 156 KMVHIIDLNSF---EPAQWINLLQTLSARPEGPPHLRI------TGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSK 226 (478)
Q Consensus 156 ~~VHIIDf~i~---~G~QWp~LlqaLa~R~~gpP~LRI------T~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~ 226 (478)
.+|+||.|=.+ -+..=.++|.+|+.+. +.+ |+|+.+.+ ...++.-+.+|+++.++.|-|.++...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~-----~~~~~y~~t~~IN~dd~-~~~~~~fVk~fie~~~~~~P~~~vllD 132 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAK-----FPPVKYQTTTIINADDA-IVGTGMFVKSSAKKGKKENPWSQVVLD 132 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcC-----CCcccccceEEEECccc-hhhHHHHHHHHHHHhcccCCcceEEEC
Confidence 47999998643 4566678999996653 667 88875433 667888999999999988876665432
Q ss_pred cccCCccccC--CCCCe-EEEEecccc
Q 011736 227 LENVDLESLR--KTGEA-LAVSSVLQM 250 (478)
Q Consensus 227 ~e~l~~~~L~--~~gEa-laVn~~~~L 250 (478)
-+......++ ...++ ++||-.-.+
T Consensus 133 ~~g~v~~~~gv~~~P~T~fVIDk~GkV 159 (184)
T TIGR01626 133 DKGAVKNAWQLNSEDSAIIVLDKTGKV 159 (184)
T ss_pred CcchHHHhcCCCCCCceEEEECCCCcE
Confidence 1221122333 34466 577654443
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=32.85 E-value=1.1e+02 Score=29.02 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=36.1
Q ss_pred HHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 011736 148 IVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEE 210 (478)
Q Consensus 148 ILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~f 210 (478)
+++.+.-.+.-.|+|+|.|.|.... +|..+. + ++++|+.+.+.++.+.+++.++
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~-~la~~~----~----~v~~vd~~~~~~~~a~~~~~~~ 123 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAA-VLAHLV----R----RVFSVERIKTLQWEAKRRLKQL 123 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHH-HHHHHh----C----EEEEEeCCHHHHHHHHHHHHHC
Confidence 3445554555689999999997543 333332 1 6999999887777777666643
No 102
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=31.91 E-value=1.5e+02 Score=30.46 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 147 AIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 147 AILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
.|++++.-.+.=.|+|+|.|.|.--. .|+.+. -++++|+-+.+.++.+.+++..
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~----~Ll~~~-----~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTE----KLLQLA-----KKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHH----HHHHhC-----CcEEEEECCHHHHHHHHHHHHh
Confidence 34444443333469999999887444 444432 2699999998887777766654
No 103
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=31.79 E-value=1.8e+02 Score=28.25 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=49.5
Q ss_pred hhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEE-eEecCCHHHHHHHHHHHHHHHHhCCCceEEcccc
Q 011736 151 AMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRI-TGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIV 224 (478)
Q Consensus 151 A~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRI-T~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~ 224 (478)
.+.+.+.|-+||=.|+.|.--.++|++|-..-. -.+.-+ |-+++.. ++-..+..+.++.+|+|.+|..+.
T Consensus 117 ~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~---~~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 117 LLRNARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRS---EEDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred HhcCCCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCC---HHHHHHHHHHHHHcCCcEEEEEee
Confidence 345577999999999999999999999987742 222222 2334432 233556678889999999997654
No 104
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=31.52 E-value=93 Score=33.44 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=40.5
Q ss_pred HHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 148 IVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 148 ILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
+++.+.+.+.-.|||+|.|.|. ++-.+|.+- |...++||+-....++.+.++..
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~----~ll~lA~~~---P~~~~iGIEI~~~~i~~a~~ka~ 167 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGR----HLLYQAKNN---PNKLFIGIEIHTPSIEQVLKQIE 167 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccH----HHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHH
Confidence 5566677666789999999994 455566653 56799999999888877766654
No 105
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=31.05 E-value=1.1e+02 Score=33.37 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=36.3
Q ss_pred EEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEE
Q 011736 159 HIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQF 220 (478)
Q Consensus 159 HIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF 220 (478)
+|+|+|.|.|..=..|.+. + |..++|+|+.+.+.++.+.+++.+ .++..+|
T Consensus 254 rVLDLGcGSG~IaiaLA~~---~----p~a~VtAVDiS~~ALe~AreNa~~----~g~rV~f 304 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALE---R----PDAFVRASDISPPALETARKNAAD----LGARVEF 304 (423)
T ss_pred EEEEEeChhhHHHHHHHHh---C----CCCEEEEEECCHHHHHHHHHHHHH----cCCcEEE
Confidence 7999999999754444332 1 447899999999988888777653 4554444
No 106
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=30.68 E-value=7.1e+02 Score=26.80 Aligned_cols=100 Identities=11% Similarity=0.042 Sum_probs=53.0
Q ss_pred ceeEEeecCCCCC----cchHHHHHHHhcCC----CCCCeEEEeEecCCHHHHHHHHHHHHHHHHhC----------CC-
Q 011736 156 KMVHIIDLNSFEP----AQWINLLQTLSARP----EGPPHLRITGIHEQKEVLEQMALRLTEEAEKL----------DI- 216 (478)
Q Consensus 156 ~~VHIIDf~i~~G----~QWp~LlqaLa~R~----~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~l----------gv- 216 (478)
+.+-|.|+|.+.| .=+-.+|+++..+. ..+|.+.+--=+.+.-..+.+-+.|..|-+.+ +-
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 5789999999999 56777788887653 23666666533434323344444444332211 10
Q ss_pred ceEEccccccc-ccCCccccCCCCCeEEEEeccccccccCCCCCC
Q 011736 217 PFQFNPIVSKL-ENVDLESLRKTGEALAVSSVLQMHRLLATDDEM 260 (478)
Q Consensus 217 pFeF~~V~~~~-e~l~~~~L~~~gEalaVn~~~~Lh~Ll~~~de~ 260 (478)
|.=.-.|..+. ..|= -++-.=.|.+.+.||-|-..+++.
T Consensus 143 ~~f~~gvpGSFY~RLf-----P~~Slh~~~Ss~slHWLS~vP~~l 182 (386)
T PLN02668 143 SYFAAGVPGSFYRRLF-----PARSIDVFHSAFSLHWLSQVPESV 182 (386)
T ss_pred ceEEEecCcccccccc-----CCCceEEEEeeccceecccCchhh
Confidence 11111111111 1111 123334788889999997766653
No 107
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=30.59 E-value=3e+02 Score=29.56 Aligned_cols=94 Identities=22% Similarity=0.311 Sum_probs=54.2
Q ss_pred HHhcCCCEEEEEeecCCCCCC-----ChHHHHHHHHH------HHHHHHHHHh---h--cCCCCCHHHHHHHHHHHHHHH
Q 011736 330 LWSLSPKVVVVTEQESNHNGP-----SLMERVMEALN------FYAAMFDCLE---S--TMSRASIERQKVEKMLFGEEI 393 (478)
Q Consensus 330 ir~L~P~vvvlvE~ea~hn~~-----~F~~RF~eaL~------yYsalfDsLd---a--~l~~~~~eR~~iE~~~lg~eI 393 (478)
+.++.=+++|-.=|-+--..| .+.+|..+++. ||--+.+-++ . ..|-.++- ..+=. | ++-
T Consensus 179 vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv-~~i~a--L-~~a 254 (383)
T COG0075 179 VDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPV-NLIYA--L-REA 254 (383)
T ss_pred hhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCH-HHHHH--H-HHH
Confidence 455666666666666532222 45566666665 6655544433 2 12211211 12201 2 344
Q ss_pred HHHhhhcc-ccccccccchhHHH-HHHHhCCCcccc
Q 011736 394 KNIIACEG-IERRERHEKLEKWI-LRLELAGFGRMP 427 (478)
Q Consensus 394 ~niVA~eG-~~R~ERhE~~~~W~-~rm~~aGF~~~~ 427 (478)
.+.|..|| ..|.+||.....+- ..|+..||+.+.
T Consensus 255 l~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~ 290 (383)
T COG0075 255 LDLILEEGLEARIARHRRLAEALRAGLEALGLELFA 290 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 56677788 78999999877664 458999999776
No 108
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=30.51 E-value=1.1e+02 Score=30.34 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=34.6
Q ss_pred HHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 148 IVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 148 ILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
|++++.-.+.=+|+|+|.|.|. |...|+.+. .++|+|+.+.+.++...+++.
T Consensus 21 iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~~-----~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 21 IVEYAEDTDGDPVLEIGPGKGA----LTDELAKRA-----KKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred HHHhcCCCCcCeEEEEeCccCH----HHHHHHHhC-----CEEEEEECCHHHHHHHHHHhc
Confidence 3333332344579999999987 444555552 379999999887777666553
No 109
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=29.14 E-value=33 Score=27.69 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=17.0
Q ss_pred cchhHHHHHHHhCCCccccCC
Q 011736 409 EKLEKWILRLELAGFGRMPLS 429 (478)
Q Consensus 409 E~~~~W~~rm~~aGF~~~~ls 429 (478)
|+..+-+++|+++|++|+.+.
T Consensus 3 ~RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHHcCCCcceee
Confidence 345566899999999999884
No 110
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=28.69 E-value=1.5e+02 Score=28.42 Aligned_cols=56 Identities=9% Similarity=0.140 Sum_probs=36.7
Q ss_pred HHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 148 IVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 148 ILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
+++++.=.+.=+|+|+|.|.|..=..|.+.+ . +.-++|+|+.+.+.++.+.+++.+
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~-~-----~~~~V~~vE~~~~~~~~a~~~l~~ 123 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIV-G-----KSGKVVTIERIPELAEKAKKTLKK 123 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhc-C-----CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4444443344579999999888432222222 1 235899999999888888777764
No 111
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=28.36 E-value=1.7e+02 Score=28.52 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=41.9
Q ss_pred HHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHH
Q 011736 147 AIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEE 210 (478)
Q Consensus 147 AILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~f 210 (478)
.++++++=++.-.|+|+|.|.|.+ .++|-.|..+. -++++|+...+..+...++|.+.
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~-aAlla~lvg~~-----g~Vv~vE~~~~l~~~A~~~l~~~ 120 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQ-AALLAHLVGPV-----GRVVSVERDPELAERARRNLARL 120 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHH-HHHHHHHHSTT-----EEEEEEESBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEecCCCcHH-HHHHHHhcCcc-----ceEEEECccHHHHHHHHHHHHHh
Confidence 466777645556789999998887 56666676543 38999999988888888888865
No 112
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=27.44 E-value=1.7e+02 Score=30.14 Aligned_cols=83 Identities=23% Similarity=0.319 Sum_probs=48.9
Q ss_pred hhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEccccc--ccc
Q 011736 151 AMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVS--KLE 228 (478)
Q Consensus 151 A~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~--~~e 228 (478)
-++|.+ |+|+|.|-|. |=+-||.-. --||||+...+.++.+.++ .+ ++.+.+ .++.- +.|
T Consensus 87 ~~~g~~---ilDvGCGgGL----LSepLArlg-----a~V~GID~s~~~V~vA~~h-~~----~dP~~~-~~~~y~l~~~ 148 (282)
T KOG1270|consen 87 PLLGMK---ILDVGCGGGL----LSEPLARLG-----AQVTGIDASDDMVEVANEH-KK----MDPVLE-GAIAYRLEYE 148 (282)
T ss_pred ccCCce---EEEeccCccc----cchhhHhhC-----CeeEeecccHHHHHHHHHh-hh----cCchhc-cccceeeehh
Confidence 334444 9999999885 335555432 6799999998888776665 22 222211 11111 123
Q ss_pred cCCccccCCCCCeEEEEeccccccc
Q 011736 229 NVDLESLRKTGEALAVSSVLQMHRL 253 (478)
Q Consensus 229 ~l~~~~L~~~gEalaVn~~~~Lh~L 253 (478)
+.+.+.+. +..=||.|+-.|||.
T Consensus 149 ~~~~E~~~--~~fDaVvcsevleHV 171 (282)
T KOG1270|consen 149 DTDVEGLT--GKFDAVVCSEVLEHV 171 (282)
T ss_pred hcchhhcc--cccceeeeHHHHHHH
Confidence 33333333 224488999999998
No 113
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=26.16 E-value=3e+02 Score=27.01 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=47.3
Q ss_pred HHHH-hhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEccc
Q 011736 147 AIVE-AMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPI 223 (478)
Q Consensus 147 AILE-A~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V 223 (478)
++|. ++...+.=+++|.|.+.| .|-+.||.|- =|+|+++-+...++.+.+||...+ +|.|.--.|
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G----~lT~~LA~rC-----d~LlavDis~~Al~~Ar~Rl~~~~---~V~~~~~dv 98 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIG----VLTERLAPRC-----DRLLAVDISPRALARARERLAGLP---HVEWIQADV 98 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTS----HHHHHHGGGE-----EEEEEEES-HHHHHHHHHHTTT-S---SEEEEES-T
T ss_pred HHHHHhcCccccceeEecCCCcc----HHHHHHHHhh-----CceEEEeCCHHHHHHHHHhcCCCC---CeEEEECcC
Confidence 4555 578888889999998887 4788999885 799999999999999999998653 454444433
No 114
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=26.12 E-value=1.3e+02 Score=30.40 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=33.1
Q ss_pred eeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 157 MVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 157 ~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
..+|+|+|.|.|. +.-.|+.+. |..++|+|+-+...++.+.++..
T Consensus 122 ~~~vLDlG~GsG~----i~~~la~~~---~~~~v~avDis~~al~~A~~n~~ 166 (284)
T TIGR03533 122 VKRILDLCTGSGC----IAIACAYAF---PEAEVDAVDISPDALAVAEINIE 166 (284)
T ss_pred CCEEEEEeCchhH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 3589999999986 333444432 44799999999888888777654
No 115
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=25.87 E-value=1.3e+02 Score=30.91 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=32.7
Q ss_pred eEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 158 VHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 158 VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
.+|+|+|.|.|. +.-.|+.+. |..++|+++-+...++.+.+++.
T Consensus 135 ~~VLDlG~GsG~----iai~la~~~---p~~~V~avDis~~al~~A~~n~~ 178 (307)
T PRK11805 135 TRILDLCTGSGC----IAIACAYAF---PDAEVDAVDISPDALAVAEINIE 178 (307)
T ss_pred CEEEEEechhhH----HHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHH
Confidence 579999999996 333444432 45899999999888887777654
No 116
>PHA03412 putative methyltransferase; Provisional
Probab=24.87 E-value=86 Score=31.52 Aligned_cols=46 Identities=7% Similarity=-0.169 Sum_probs=30.4
Q ss_pred eeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHH
Q 011736 157 MVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALR 206 (478)
Q Consensus 157 ~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~r 206 (478)
...|+|+|.|.|.= .-+++.+-..++..+||+|+-+...++.+.++
T Consensus 50 ~grVLDlG~GSG~L----alala~~~~~~~~~~V~aVEID~~Al~~Ar~n 95 (241)
T PHA03412 50 SGSVVDLCAGIGGL----SFAMVHMMMYAKPREIVCVELNHTYYKLGKRI 95 (241)
T ss_pred CCEEEEccChHHHH----HHHHHHhcccCCCcEEEEEECCHHHHHHHHhh
Confidence 45899999998843 33333332222357999999988877666544
No 117
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=24.41 E-value=3.2e+02 Score=20.73 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=26.4
Q ss_pred EEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHH
Q 011736 159 HIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMA 204 (478)
Q Consensus 159 HIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg 204 (478)
+|+|+|.|.|. +...++. .+..++++++.+...++.+.
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeCCHHHHHHHH
Confidence 47999988874 4555554 24579999998877665544
No 118
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=23.91 E-value=1.5e+02 Score=28.39 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=38.8
Q ss_pred EEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEccccccccc
Q 011736 159 HIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVSKLEN 229 (478)
Q Consensus 159 HIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~ 229 (478)
.|+|+|.|-|+ |.+.=+++. |.+++|-|+...... .-|...++.+|++ .++++..+.|+
T Consensus 51 ~~lDiGSGaGf--PGipLaI~~-----p~~~~~LvEs~~KK~----~FL~~~~~~L~L~-nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGF--PGIPLAIAR-----PDLQVTLVESVGKKV----AFLKEVVRELGLS-NVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTT--THHHHHHH------TTSEEEEEESSHHHH----HHHHHHHHHHT-S-SEEEEES-HHH
T ss_pred eEEecCCCCCC--hhHHHHHhC-----CCCcEEEEeCCchHH----HHHHHHHHHhCCC-CEEEEEeeecc
Confidence 59999987776 788777765 679999999875432 2345556677887 34445556666
No 119
>PTZ00063 histone deacetylase; Provisional
Probab=23.70 E-value=57 Score=35.56 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCEEEEEeecCCCCCCChHHHHHHHHHHHHHHH
Q 011736 324 GSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEALNFYAAMF 367 (478)
Q Consensus 324 ~~~L~~ir~L~P~vvvlvE~ea~hn~~~F~~RF~eaL~yYsalf 367 (478)
..+++.+++++..++++.| ..+| +.....|+.|..++.
T Consensus 279 ~~~~~~~~~~~~pil~l~g--GGY~----~~~lar~w~~~t~~~ 316 (436)
T PTZ00063 279 AACVEFVRSLNIPLLVLGG--GGYT----IRNVARCWAYETGVI 316 (436)
T ss_pred HHHHHHHHhcCCCEEEEeC--ccCC----chHHHHHHHHHHHHH
Confidence 4567788888888888776 3343 345566777776665
No 120
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=23.55 E-value=1.4e+02 Score=28.38 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=44.0
Q ss_pred HHHHHHHHH-HHhhcCCHHHHHHHHHHhhccCCCCCChhhhHHHHHHHHHHHHH
Q 011736 49 LIHLLVACA-NHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRM 101 (478)
Q Consensus 49 L~~LL~~cA-~Av~~g~~~~A~~~L~~L~~laS~~Gd~~qRlA~yF~eAL~~Rl 101 (478)
+..+|+.+. ..+..++...|..++..|..+..|..+-..|+..-|.+|+..=.
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~ 180 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYK 180 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHH
Confidence 555666655 77888999999999999999988777788999999999987544
No 121
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=23.38 E-value=1.6e+02 Score=30.08 Aligned_cols=39 Identities=31% Similarity=0.291 Sum_probs=34.3
Q ss_pred CCCeEEEeEecCC----HHHHHHHHHHHHHHHHhCCCceEEcc
Q 011736 184 GPPHLRITGIHEQ----KEVLEQMALRLTEEAEKLDIPFQFNP 222 (478)
Q Consensus 184 gpP~LRIT~I~~~----~~~L~~tg~rL~~fA~~lgvpFeF~~ 222 (478)
|+|.-|||...++ .+.|+++.+.+.+-++.+|....|+.
T Consensus 219 gaPrYri~v~a~dykkaee~l~~a~~~~~~~ikk~gg~~~~~r 261 (269)
T COG1093 219 GAPRYRIDVQAPDYKKAEEVLEKAAEAAIKTIKKLGGEGTFIR 261 (269)
T ss_pred cCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 7899999988876 35799999999999999999999985
No 122
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=23.27 E-value=2.4e+02 Score=26.48 Aligned_cols=48 Identities=8% Similarity=0.006 Sum_probs=31.3
Q ss_pred ceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 156 KMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 156 ~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
..-.|+|+|.|.|.- .-.++.+. ++..+|++|+.+.+.++.+.+++.+
T Consensus 40 ~~~~vlDlG~GtG~~----s~~~a~~~--~~~~~v~avD~~~~~~~~a~~n~~~ 87 (198)
T PRK00377 40 KGDMILDIGCGTGSV----TVEASLLV--GETGKVYAVDKDEKAINLTRRNAEK 87 (198)
T ss_pred CcCEEEEeCCcCCHH----HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHH
Confidence 334899999998732 22222221 1336899999998888877766554
No 123
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=22.97 E-value=2.8e+02 Score=26.61 Aligned_cols=58 Identities=16% Similarity=0.050 Sum_probs=45.9
Q ss_pred CcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEccccc
Q 011736 168 PAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVS 225 (478)
Q Consensus 168 G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~ 225 (478)
...||-++..+..+.+.-+.-.|+=.+-+.+.|+.++.-..++++..|.+++|..-..
T Consensus 9 S~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd 66 (183)
T PF02056_consen 9 STYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTD 66 (183)
T ss_dssp SCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESS
T ss_pred hHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 6789988877766665656567777777889999999999999999999999976543
No 124
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=22.62 E-value=3e+02 Score=28.14 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=35.2
Q ss_pred eeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCc-eEEc
Q 011736 157 MVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIP-FQFN 221 (478)
Q Consensus 157 ~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvp-FeF~ 221 (478)
.-+|+|++.|.|. +--.|+.+ + -+++||+.+...++.+.++. +..|++ .+|.
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~--~---~~V~gvD~s~~av~~A~~n~----~~~~l~~v~~~ 226 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP--G---MQLTGIEISAEAIACAKQSA----AELGLTNVQFQ 226 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc--C---CEEEEEeCCHHHHHHHHHHH----HHcCCCceEEE
Confidence 3589999999986 33445553 2 38999999988888766554 344553 4453
No 125
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=22.56 E-value=1.6e+02 Score=29.54 Aligned_cols=64 Identities=20% Similarity=0.364 Sum_probs=44.1
Q ss_pred CcchHHHHHHHhc-CCCCCCe-EEEeEe-----cCC------HHHHHHHHHHHHHHHHhCCCceEEcccccccccCC
Q 011736 168 PAQWINLLQTLSA-RPEGPPH-LRITGI-----HEQ------KEVLEQMALRLTEEAEKLDIPFQFNPIVSKLENVD 231 (478)
Q Consensus 168 G~QWp~LlqaLa~-R~~gpP~-LRIT~I-----~~~------~~~L~~tg~rL~~fA~~lgvpFeF~~V~~~~e~l~ 231 (478)
..-|..|++.|.+ ||.-|.. +=||.= +.+ ...-..+.+||.+.-+.+|+.|-+..|.++++.|.
T Consensus 7 ~~~W~~~L~lL~~~R~r~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 7 AAEWQAFLDLLRRHRPRQPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLP 83 (266)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCccc
Confidence 3469999999986 4444433 323211 112 12245688999999999999999999998877763
No 126
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.39 E-value=1.1e+02 Score=30.07 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=22.9
Q ss_pred hhcCCceeEEeecCCC--CCcchHHHHHHHhcCC
Q 011736 151 AMEGEKMVHIIDLNSF--EPAQWINLLQTLSARP 182 (478)
Q Consensus 151 A~~g~~~VHIIDf~i~--~G~QWp~LlqaLa~R~ 182 (478)
...|.+.+||+|++.. ....=..+|..+++..
T Consensus 42 ~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~ 75 (234)
T PRK13587 42 QFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLT 75 (234)
T ss_pred hccCCCEEEEEECcccccCCcchHHHHHHHHhhc
Confidence 3458999999999944 2223467888888744
No 127
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=21.75 E-value=2.1e+02 Score=30.63 Aligned_cols=67 Identities=10% Similarity=0.167 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEE
Q 011736 143 ITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQF 220 (478)
Q Consensus 143 tANqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF 220 (478)
.+-+.+..++.-.+.-.|+|+|.|.|.--..+.+.+- .-+|++++.+...++.+.+++. ++|+..++
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-------~~~v~a~D~~~~~l~~~~~n~~----r~g~~~~v 291 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-------QAQVVALDIHEHRLKRVYENLK----RLGLTIKA 291 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-------CCeEEEEeCCHHHHHHHHHHHH----HcCCCeEE
Confidence 3456666767644455899999999987777766541 2489999999888888776664 46776443
No 128
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=21.67 E-value=2.4e+02 Score=30.35 Aligned_cols=63 Identities=8% Similarity=0.131 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCceeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCc
Q 011736 145 NQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIP 217 (478)
Q Consensus 145 NqAILEA~~g~~~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvp 217 (478)
.+.+.+++.-.+.-+|+|+|.|.|.-=..+.+.+ .+.-+||+|+.+...++.+.+++. +.|+.
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~------~~~~~v~avDi~~~~l~~~~~n~~----~~g~~ 301 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELL------KNTGKVVALDIHEHKLKLIEENAK----RLGLT 301 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHh------CCCCEEEEEeCCHHHHHHHHHHHH----HcCCC
Confidence 3455556654444579999999887544444433 122499999999888887766654 45664
No 129
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=21.65 E-value=1.9e+02 Score=28.64 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=32.3
Q ss_pred eeEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHH
Q 011736 157 MVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTE 209 (478)
Q Consensus 157 ~VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~ 209 (478)
..+|+|+|.|.|.-=.. |+.+. |..++|+|+.+.+.++.+.+++..
T Consensus 87 ~~~vLDlg~GsG~i~l~----la~~~---~~~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAA----LAAAL---DGIELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred CCEEEEecCchHHHHHH----HHHhC---CCCEEEEEECCHHHHHHHHHHHHH
Confidence 35799999998853333 33322 236899999998888887777643
No 130
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=21.58 E-value=1.9e+02 Score=31.44 Aligned_cols=62 Identities=13% Similarity=-0.007 Sum_probs=45.0
Q ss_pred cCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHhCCCceEEccccc
Q 011736 163 LNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNPIVS 225 (478)
Q Consensus 163 f~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA~~lgvpFeF~~V~~ 225 (478)
+|.|. .-=|.||+.|..++..-|--.|+=++-+.+.|+.++....++++..|.+++|.....
T Consensus 6 IGaGS-~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttd 67 (437)
T cd05298 6 AGGGS-TYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTD 67 (437)
T ss_pred ECCcH-HHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 35454 233588999999975544444555566667788899999999999999999887554
No 131
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=21.56 E-value=89 Score=30.80 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=21.2
Q ss_pred cCCceeEEeecCC--CCCcchHHHHHHHhcCC
Q 011736 153 EGEKMVHIIDLNS--FEPAQWINLLQTLSARP 182 (478)
Q Consensus 153 ~g~~~VHIIDf~i--~~G~QWp~LlqaLa~R~ 182 (478)
.|.+.+||||++. +.+.+. .+|..+++.-
T Consensus 44 ~g~~~l~ivDLd~~~g~~~n~-~~i~~i~~~~ 74 (241)
T PRK14024 44 DGAEWIHLVDLDAAFGRGSNR-ELLAEVVGKL 74 (241)
T ss_pred CCCCEEEEEeccccCCCCccH-HHHHHHHHHc
Confidence 6889999999983 445554 6777777654
No 132
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=21.38 E-value=51 Score=35.12 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=10.6
Q ss_pred CCceeEEeecCCC
Q 011736 154 GEKMVHIIDLNSF 166 (478)
Q Consensus 154 g~~~VHIIDf~i~ 166 (478)
.+..|||||||+.
T Consensus 164 ~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 164 DANVIHIIDFGMA 176 (449)
T ss_pred CCceEEEEeccch
Confidence 3468999999975
No 133
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=21.03 E-value=3e+02 Score=27.59 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=52.3
Q ss_pred HHHHHHHhhc-CCCCCHHHHHH-HHHHHHHHHHHHhhhcccccccc-ccchhHHHHHHHhCCCccccCChhHHHHHHHHH
Q 011736 364 AAMFDCLEST-MSRASIERQKV-EKMLFGEEIKNIIACEGIERRER-HEKLEKWILRLELAGFGRMPLSYHGILQARRLL 440 (478)
Q Consensus 364 salfDsLda~-l~~~~~eR~~i-E~~~lg~eI~niVA~eG~~R~ER-hE~~~~W~~rm~~aGF~~~~ls~~~~~qAk~LL 440 (478)
.-.-+-|... ++-..++|..+ |+ -.++|.|+|+....+..-+ +-.-..=...|+.|||..-|+.+ +..|+...|
T Consensus 74 eI~~eIl~kGeiQlTaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~evl 150 (234)
T COG1500 74 EIAEEILKKGEIQLTAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQEVL 150 (234)
T ss_pred HHHHHHHhcCceeccHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHHHHH
Confidence 3344444432 23345666654 54 5799999999998776665 66677788889999999998854 566777665
Q ss_pred hh
Q 011736 441 QS 442 (478)
Q Consensus 441 ~~ 442 (478)
+.
T Consensus 151 K~ 152 (234)
T COG1500 151 KA 152 (234)
T ss_pred HH
Confidence 53
No 134
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=20.97 E-value=2.1e+02 Score=29.89 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=42.0
Q ss_pred HHHhhcCCceeEEeecC-CCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHHHHH
Q 011736 148 IVEAMEGEKMVHIIDLN-SFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLTEEA 211 (478)
Q Consensus 148 ILEA~~g~~~VHIIDf~-i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~~fA 211 (478)
++.|+-++.++|+||++ -..|.-.|..+.+|-+..-.--||++.--+...-.-..+|+.|-..|
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la 148 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA 148 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH
Confidence 56788899999999998 66777777777776655545557887755443333344454444433
No 135
>PRK03646 dadX alanine racemase; Reviewed
Probab=20.60 E-value=2e+02 Score=30.17 Aligned_cols=53 Identities=6% Similarity=-0.012 Sum_probs=32.2
Q ss_pred ceeEE-eecCCC-CCc---chHHHHHHHhcCCCCCCeEEEeEecCC---HHHHHHHHHHHHHHHH
Q 011736 156 KMVHI-IDLNSF-EPA---QWINLLQTLSARPEGPPHLRITGIHEQ---KEVLEQMALRLTEEAE 212 (478)
Q Consensus 156 ~~VHI-IDf~i~-~G~---QWp~LlqaLa~R~~gpP~LRIT~I~~~---~~~L~~tg~rL~~fA~ 212 (478)
-.||| ||-|++ .|+ +++.+++.+.. .|.|+|+||-.. .+....+.+.+.+|.+
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~ 177 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMSHFARADHPDGISEAMARIEQ 177 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcCCCCCCCCCHHHHHHHHHHH
Confidence 36898 998854 565 45666666644 356999999532 1111235666666644
No 136
>PRK14967 putative methyltransferase; Provisional
Probab=20.56 E-value=2.3e+02 Score=27.15 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=29.6
Q ss_pred eEEeecCCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCHHHHHHHHHHHH
Q 011736 158 VHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVLEQMALRLT 208 (478)
Q Consensus 158 VHIIDf~i~~G~QWp~LlqaLa~R~~gpP~LRIT~I~~~~~~L~~tg~rL~ 208 (478)
-+|+|+|.|.|.- . ..++.. +. -+||+|+.+...++.+.+++.
T Consensus 38 ~~vLDlGcG~G~~-~---~~la~~--~~--~~v~~vD~s~~~l~~a~~n~~ 80 (223)
T PRK14967 38 RRVLDLCTGSGAL-A---VAAAAA--GA--GSVTAVDISRRAVRSARLNAL 80 (223)
T ss_pred CeEEEecCCHHHH-H---HHHHHc--CC--CeEEEEECCHHHHHHHHHHHH
Confidence 5899999998873 2 223333 21 489999999887776665553
Done!