BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011737
         (478 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|B Chain B, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|C Chain C, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|D Chain D, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
          Length = 573

 Score = 37.4 bits (85), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 12/181 (6%)

Query: 71  LVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNY-----LGGRKYK-ALGLVQYTL 124
           L ++  IS Y  G+++  Y+   SVK ++  +   + +     LG +     + L     
Sbjct: 376 LRLWEVISRYVEGIVSLHYKTDESVKEDFELQAWCREFTEIGLLGAQDRGFPVSLQSKEQ 435

Query: 125 LCG--AMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNF 182
           LC    M  +T T   S   + + + Y    + APC     P       +E +++ +PNF
Sbjct: 436 LCHFVTMCIFTCTGQHSSNHLGQLDWYTWVPN-APCTMRLPPPTTKDATLETVMATLPNF 494

Query: 183 HKLSWLSTIAASMSFSYAG-IGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQ 241
           H+ S   +I   +       + +G    +  SG G K  LT  +   +L A DK   +  
Sbjct: 495 HQASLQMSITWQLGRCQPTMVALGQHEEEYFSGPGPKAVLT--KFREELAALDKDIEVRN 552

Query: 242 A 242
           A
Sbjct: 553 A 553


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,614,631
Number of Sequences: 62578
Number of extensions: 537155
Number of successful extensions: 1391
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 2
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)