Query 011737
Match_columns 478
No_of_seqs 129 out of 1261
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 7.2E-57 1.6E-61 447.6 34.8 404 26-467 30-437 (437)
2 KOG1304 Amino acid transporter 100.0 8.9E-57 1.9E-61 438.7 30.3 388 31-464 44-449 (449)
3 PTZ00206 amino acid transporte 100.0 4.2E-56 9.2E-61 455.0 33.8 403 33-465 59-465 (467)
4 PLN03074 auxin influx permease 100.0 8.3E-50 1.8E-54 406.6 34.9 394 31-476 43-463 (473)
5 PF01490 Aa_trans: Transmembra 100.0 2.3E-53 5.1E-58 432.5 -2.0 402 32-461 1-408 (409)
6 KOG4303 Vesicular inhibitory a 100.0 3.9E-49 8.5E-54 362.2 5.1 408 28-473 111-523 (524)
7 KOG1305 Amino acid transporter 100.0 1.4E-44 3.1E-49 358.0 27.2 402 30-467 2-408 (411)
8 COG0814 SdaC Amino acid permea 100.0 1.4E-31 3E-36 269.2 32.5 394 28-459 3-410 (415)
9 PRK10483 tryptophan permease; 99.9 7.5E-24 1.6E-28 209.7 31.6 357 28-432 5-373 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 1.3E-23 2.9E-28 210.0 32.5 353 32-434 1-367 (394)
11 PRK09664 tryptophan permease T 99.9 1.2E-23 2.6E-28 208.0 30.4 356 31-432 6-374 (415)
12 PRK15132 tyrosine transporter 99.9 3.2E-23 7E-28 206.2 31.1 348 35-433 4-363 (403)
13 TIGR00837 araaP aromatic amino 99.9 2.3E-23 5E-28 209.8 25.7 346 39-432 2-359 (381)
14 PRK13629 threonine/serine tran 99.9 1.9E-20 4.2E-25 185.3 33.8 388 37-455 22-437 (443)
15 TIGR00814 stp serine transport 99.9 6.3E-20 1.4E-24 183.2 26.3 378 36-449 5-395 (397)
16 PRK15049 L-asparagine permease 99.7 2.8E-14 6.1E-19 148.2 33.7 379 20-432 16-406 (499)
17 PRK10655 potE putrescine trans 99.7 3.9E-14 8.4E-19 145.5 33.0 240 30-296 4-245 (438)
18 PRK10249 phenylalanine transpo 99.7 5.4E-14 1.2E-18 144.9 34.1 366 29-431 18-394 (458)
19 PRK10435 cadB lysine/cadaverin 99.7 1.4E-13 3E-18 141.1 33.2 243 29-299 2-246 (435)
20 PRK10644 arginine:agmatin anti 99.7 2.4E-13 5.1E-18 139.8 35.0 241 29-298 5-249 (445)
21 PRK10238 aromatic amino acid t 99.7 1.8E-13 4E-18 140.9 31.7 368 28-432 8-386 (456)
22 PRK10580 proY putative proline 99.6 1.6E-12 3.4E-17 134.2 36.1 244 28-294 5-253 (457)
23 PRK10836 lysine transporter; P 99.6 1.4E-12 3E-17 135.7 35.7 253 23-298 6-263 (489)
24 TIGR00905 2A0302 transporter, 99.6 9.4E-13 2E-17 136.4 33.8 249 30-299 5-257 (473)
25 PRK10746 putative transport pr 99.6 1.2E-12 2.6E-17 134.9 33.8 369 29-432 7-388 (461)
26 PRK11387 S-methylmethionine tr 99.6 1.3E-12 2.7E-17 135.4 33.7 249 29-300 11-266 (471)
27 TIGR01773 GABAperm gamma-amino 99.6 1.4E-12 3E-17 134.5 33.8 247 29-298 9-259 (452)
28 TIGR00906 2A0303 cationic amin 99.6 1E-12 2.2E-17 138.0 32.7 375 27-431 23-410 (557)
29 PRK11049 D-alanine/D-serine/gl 99.6 1.7E-12 3.7E-17 134.2 33.8 247 28-296 16-267 (469)
30 COG1113 AnsP Gamma-aminobutyra 99.6 4.6E-13 1E-17 131.1 26.8 368 26-431 7-388 (462)
31 TIGR03810 arg_ornith_anti argi 99.6 9.8E-13 2.1E-17 136.1 31.0 364 32-432 1-380 (468)
32 TIGR00930 2a30 K-Cl cotranspor 99.6 1.7E-12 3.6E-17 142.7 33.4 253 30-294 74-334 (953)
33 PRK11021 putative transporter; 99.6 4.1E-12 8.9E-17 129.3 34.1 227 35-294 2-231 (410)
34 TIGR00909 2A0306 amino acid tr 99.6 2.4E-12 5.1E-17 132.0 30.4 294 31-348 2-307 (429)
35 KOG1287 Amino acid transporter 99.6 1.7E-13 3.7E-18 136.3 20.8 370 26-435 6-389 (479)
36 TIGR00913 2A0310 amino acid pe 99.6 1.1E-11 2.3E-16 128.8 34.4 245 31-294 1-251 (478)
37 PRK10197 gamma-aminobutyrate t 99.5 1.6E-11 3.5E-16 126.2 31.1 349 43-431 3-367 (446)
38 TIGR00911 2A0308 L-type amino 99.5 1.3E-11 2.8E-16 128.9 30.4 250 28-299 38-294 (501)
39 TIGR00908 2A0305 ethanolamine 99.5 3.2E-11 6.9E-16 124.1 31.6 240 28-293 3-244 (442)
40 PRK11357 frlA putative fructos 99.5 2.2E-11 4.7E-16 125.4 29.8 244 28-296 4-251 (445)
41 TIGR00912 2A0309 spore germina 99.4 4.3E-11 9.3E-16 119.7 24.2 239 32-303 1-241 (359)
42 PF13520 AA_permease_2: Amino 99.4 1.4E-10 3.1E-15 118.8 27.3 291 34-351 1-304 (426)
43 COG0833 LysP Amino acid transp 99.4 7.7E-10 1.7E-14 111.0 27.7 367 30-431 42-427 (541)
44 TIGR03428 ureacarb_perm permea 99.3 1.1E-08 2.3E-13 106.3 35.8 255 28-297 9-270 (475)
45 TIGR00907 2A0304 amino acid pe 99.3 3.8E-09 8.3E-14 109.9 31.8 249 28-290 8-267 (482)
46 COG0531 PotE Amino acid transp 99.3 5.6E-09 1.2E-13 108.2 31.6 253 26-301 6-262 (466)
47 PRK15238 inner membrane transp 99.3 2.5E-08 5.4E-13 104.0 34.8 253 30-295 5-266 (496)
48 TIGR03813 put_Glu_GABA_T putat 99.2 2.1E-08 4.6E-13 104.1 32.3 246 33-300 2-254 (474)
49 KOG1286 Amino acid transporter 99.2 5.5E-10 1.2E-14 115.5 18.8 378 28-432 26-423 (554)
50 TIGR00910 2A0307_GadC glutamat 99.2 2E-08 4.4E-13 104.7 30.1 237 31-293 3-247 (507)
51 PF00324 AA_permease: Amino ac 98.9 7.9E-09 1.7E-13 107.4 12.9 286 43-341 6-310 (478)
52 PF03845 Spore_permease: Spore 98.9 9.9E-08 2.1E-12 93.8 19.3 236 33-303 1-237 (320)
53 KOG3832 Predicted amino acid t 98.6 3.1E-07 6.7E-12 80.2 9.7 216 38-265 16-301 (319)
54 COG3949 Uncharacterized membra 98.5 4.5E-05 9.7E-10 72.3 22.9 135 37-190 6-143 (349)
55 PRK11375 allantoin permease; P 98.5 0.0019 4.1E-08 67.0 36.5 239 99-350 89-341 (484)
56 KOG1289 Amino acid transporter 98.5 0.00011 2.3E-09 74.5 25.4 255 31-302 47-314 (550)
57 TIGR00800 ncs1 NCS1 nucleoside 98.5 0.00023 5E-09 73.2 28.5 259 26-303 6-274 (442)
58 PRK12488 acetate permease; Pro 98.0 0.027 5.8E-07 59.6 34.7 148 31-198 66-216 (549)
59 TIGR02358 thia_cytX probable h 98.0 0.0068 1.5E-07 61.1 27.8 226 36-301 7-233 (386)
60 PF00474 SSF: Sodium:solute sy 98.0 0.0005 1.1E-08 70.0 19.0 150 31-199 5-157 (406)
61 TIGR02119 panF sodium/pantothe 98.0 0.031 6.8E-07 58.0 32.7 150 31-198 39-193 (471)
62 PRK09442 panF sodium/panthothe 97.9 0.041 8.8E-07 57.4 33.9 150 31-198 40-194 (483)
63 TIGR00813 sss transporter, SSS 97.8 0.012 2.6E-07 59.8 25.4 149 31-198 2-152 (407)
64 COG0591 PutP Na+/proline sympo 97.8 0.045 9.7E-07 57.1 29.1 150 31-198 37-191 (493)
65 COG1457 CodB Purine-cytosine p 97.7 0.034 7.5E-07 56.1 25.9 265 103-425 85-355 (442)
66 PRK11017 codB cytosine permeas 97.7 0.033 7.1E-07 56.6 26.2 173 99-301 71-244 (404)
67 TIGR00796 livcs branched-chain 97.6 0.11 2.3E-06 52.0 29.3 73 42-123 3-78 (378)
68 TIGR02711 symport_actP cation/ 97.5 0.21 4.6E-06 52.9 33.0 148 31-198 66-216 (549)
69 PRK09395 actP acetate permease 97.4 0.27 5.8E-06 52.2 34.3 148 31-198 68-218 (551)
70 TIGR02121 Na_Pro_sym sodium/pr 97.3 0.27 5.9E-06 51.3 30.5 153 31-198 35-192 (487)
71 COG1953 FUI1 Cytosine/uracil/t 97.2 0.34 7.5E-06 49.3 29.7 201 98-312 102-318 (497)
72 PF02133 Transp_cyt_pur: Perme 97.1 0.0059 1.3E-07 62.8 12.6 113 29-146 4-118 (440)
73 PF02554 CstA: Carbon starvati 97.1 0.011 2.3E-07 57.7 12.8 105 35-142 53-157 (376)
74 PRK15419 proline:sodium sympor 97.0 0.56 1.2E-05 49.2 29.4 152 31-198 39-196 (502)
75 TIGR03648 Na_symport_lg probab 96.9 0.81 1.7E-05 48.6 35.4 148 31-197 31-180 (552)
76 COG4147 DhlC Predicted symport 96.9 0.61 1.3E-05 47.1 26.2 224 51-297 61-293 (529)
77 TIGR00835 agcS amino acid carr 96.7 0.78 1.7E-05 46.5 24.7 85 32-120 45-138 (425)
78 COG0733 Na+-dependent transpor 96.3 1.5 3.2E-05 44.3 26.8 236 35-287 10-261 (439)
79 COG1914 MntH Mn2+ and Fe2+ tra 96.1 1.8 3.9E-05 43.8 29.7 106 32-144 15-122 (416)
80 PRK15015 carbon starvation pro 96.0 0.36 7.8E-06 50.7 16.3 101 38-141 87-187 (701)
81 KOG2082 K+/Cl- cotransporter K 95.9 1 2.2E-05 47.8 19.4 107 32-141 113-221 (1075)
82 PRK10484 putative transporter; 95.8 3.1 6.7E-05 43.9 33.0 154 31-198 37-197 (523)
83 PRK00701 manganese transport p 95.8 2.8 6E-05 43.0 31.2 44 99-142 94-137 (439)
84 KOG1288 Amino acid transporter 95.7 1.3 2.8E-05 46.6 19.0 229 53-294 88-348 (945)
85 COG1966 CstA Carbon starvation 95.0 0.19 4.2E-06 51.4 10.4 103 36-141 54-156 (575)
86 KOG2083 Na+/K+ symporter [Inor 94.5 0.26 5.7E-06 50.9 9.9 236 33-292 29-275 (643)
87 TIGR00796 livcs branched-chain 93.3 0.9 2E-05 45.5 11.1 100 41-144 197-300 (378)
88 PF01235 Na_Ala_symp: Sodium:a 92.3 6.6 0.00014 39.7 15.8 86 26-112 11-101 (416)
89 KOG2349 Na+:iodide/myo-inosito 91.9 3.9 8.6E-05 42.9 13.9 240 31-297 44-296 (585)
90 PF01566 Nramp: Natural resist 91.9 15 0.00031 36.7 25.6 82 99-194 42-125 (358)
91 PF05525 Branch_AA_trans: Bran 91.8 1.2 2.7E-05 45.1 9.9 107 55-177 220-326 (427)
92 PF00209 SNF: Sodium:neurotran 91.0 23 0.0005 37.3 29.8 102 35-146 6-112 (523)
93 COG1114 BrnQ Branched-chain am 87.4 6.8 0.00015 39.2 10.9 116 44-177 208-328 (431)
94 COG0814 SdaC Amino acid permea 78.9 17 0.00037 37.0 10.3 83 380-462 323-409 (415)
95 COG4145 PanF Na+/panthothenate 77.9 78 0.0017 31.5 24.3 244 31-304 38-301 (473)
96 PRK15433 branched-chain amino 77.8 12 0.00027 38.0 8.8 103 59-178 228-330 (439)
97 PF05525 Branch_AA_trans: Bran 77.0 91 0.002 31.8 27.1 66 35-108 4-72 (427)
98 KOG2466 Uridine permease/thiam 75.8 1E+02 0.0022 31.8 15.1 264 28-311 50-331 (572)
99 PRK04949 putative sulfate tran 61.0 1.4E+02 0.0031 28.0 11.4 47 260-312 18-64 (251)
100 PF02028 BCCT: BCCT family tra 59.4 2.3E+02 0.0049 29.6 26.9 158 35-199 76-256 (485)
101 PLN00151 potassium transporter 56.5 3.2E+02 0.007 30.4 16.4 24 240-266 347-370 (852)
102 PF05805 L6_membrane: L6 membr 51.0 35 0.00076 30.5 5.2 65 403-467 44-118 (195)
103 PHA02764 hypothetical protein; 48.8 2.7E+02 0.0058 27.3 18.3 93 29-127 9-105 (399)
104 PRK09928 choline transport pro 44.4 4.6E+02 0.0099 28.6 21.6 103 37-143 96-222 (679)
105 PF05915 DUF872: Eukaryotic pr 39.2 71 0.0015 26.0 4.9 68 33-104 38-112 (115)
106 TIGR02230 ATPase_gene1 F0F1-AT 38.5 1.1E+02 0.0024 24.2 5.7 20 440-459 75-94 (100)
107 PRK13183 psbN photosystem II r 37.9 30 0.00065 22.9 2.0 31 274-304 5-35 (46)
108 CHL00020 psbN photosystem II p 35.1 38 0.00083 22.1 2.1 29 276-304 4-32 (43)
109 PF11990 DUF3487: Protein of u 35.0 2.3E+02 0.005 23.3 7.4 64 29-94 16-81 (121)
110 PF02468 PsbN: Photosystem II 32.2 44 0.00095 21.9 2.1 29 276-304 4-32 (43)
111 KOG1289 Amino acid transporter 32.0 6.3E+02 0.014 26.7 12.4 48 99-146 325-372 (550)
112 TIGR03750 conj_TIGR03750 conju 31.1 2.9E+02 0.0062 22.4 8.0 65 29-94 13-78 (111)
113 KOG4812 Golgi-associated prote 29.1 1.2E+02 0.0025 28.1 5.0 80 387-469 161-255 (262)
114 PRK15433 branched-chain amino 28.3 6.7E+02 0.015 25.8 25.8 43 35-77 9-54 (439)
115 PF12794 MscS_TM: Mechanosensi 27.0 6.2E+02 0.013 24.9 12.1 43 269-311 42-84 (340)
116 PRK12768 CysZ-like protein; Re 26.8 5.3E+02 0.011 24.1 10.1 27 260-291 9-35 (240)
117 PLN00150 potassium ion transpo 25.7 9.5E+02 0.021 26.7 19.7 25 239-266 286-310 (779)
118 PF01235 Na_Ala_symp: Sodium:a 25.4 3.1E+02 0.0067 28.0 7.9 86 107-205 301-386 (416)
119 TIGR00909 2A0306 amino acid tr 24.2 5.8E+02 0.013 25.7 10.1 47 100-146 265-311 (429)
120 PF03134 TB2_DP1_HVA22: TB2/DP 23.4 1.9E+02 0.0041 22.3 4.9 28 407-434 2-29 (94)
121 TIGR01197 nramp NRAMP (natural 23.1 7.8E+02 0.017 24.8 28.9 95 40-141 10-106 (390)
122 PF13520 AA_permease_2: Amino 22.8 7.8E+02 0.017 24.6 12.1 46 101-146 260-305 (426)
123 COG4769 Predicted membrane pro 21.7 2.3E+02 0.0049 24.7 5.1 81 391-478 93-175 (181)
124 PLN02680 carbon-monoxide oxyge 21.6 3.6E+02 0.0078 25.0 6.9 68 271-342 76-143 (232)
125 PF01102 Glycophorin_A: Glycop 21.4 1.5E+02 0.0033 24.4 4.0 28 443-470 66-93 (122)
126 PF03977 OAD_beta: Na+-transpo 20.6 2.2E+02 0.0048 27.9 5.4 94 238-331 146-254 (360)
127 PRK09950 putative transporter; 20.5 5.1E+02 0.011 27.2 8.6 102 120-222 403-506 (506)
128 cd08765 Cyt_b561_CYBRD1 Verteb 20.0 5.5E+02 0.012 22.1 7.3 68 271-342 44-111 (153)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-57 Score=447.60 Aligned_cols=404 Identities=37% Similarity=0.607 Sum_probs=356.9
Q ss_pred CCCCCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcC--ccccccHHH
Q 011737 26 DDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNS--VKRNYTYRD 103 (478)
Q Consensus 26 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~--~~~~~sy~~ 103 (478)
++..++|++||++++++.++.++|.|+|+||||++++||+.|++++++.++++.||..+|.+|++..+. ++|.++|+|
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~d 109 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPD 109 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHH
Confidence 345668889999999999999999999999999999999999999999999999999999999876543 677899999
Q ss_pred HHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCC
Q 011737 104 AVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFH 183 (478)
Q Consensus 104 l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~ 183 (478)
+++++||+++++++.+.+.+.++|+|+.|++..+|++..+.+.+|.+.. ..+.+.|+++++++.+|++++||++
T Consensus 110 l~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~ 183 (437)
T KOG1303|consen 110 LGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFH 183 (437)
T ss_pred HHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcc
Confidence 9999999999999999999999999999999999999999988766542 2335788999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHH-HHHhHHHHHHhhcchhHHHHHHh
Q 011737 184 KLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRI-FQAIGNMAFACSYAAILIEIQDT 262 (478)
Q Consensus 184 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~faf~~~~~~~~i~~~ 262 (478)
.++++|..++++.+.+..+.+..++.++...+..+...... .+ . .. ++++|++.|+|.+|...|+|+++
T Consensus 184 ~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~------~~-~---~~~f~a~g~iaFaf~gH~v~peIq~t 253 (437)
T KOG1303|consen 184 SLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL------GT-I---PTVFTALGIIAFAYGGHAVLPEIQHT 253 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC------CC-C---cchhhhhhheeeeecCCeeeeehHhh
Confidence 99999999999999888888887777765543222111111 00 1 11 79999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccccccccccccCCchhHHHHHHHHHHHHHHHhhhhcccch
Q 011737 263 LKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPV 342 (478)
Q Consensus 263 m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 342 (478)
||+| ++|+|++.+++.+++.+|..+++.||++|||+++++++.|++ ++.|+...+|+++.+|++.+|.++..|.
T Consensus 254 Mk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl 327 (437)
T KOG1303|consen 254 MKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPL 327 (437)
T ss_pred cCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcch
Confidence 9999 779999999999999999999999999999999999999996 6889999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHhhhh
Q 011737 343 FGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFP 422 (478)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~~~~l~fi~P 422 (478)
.+.+|+....+.++ +.+ +....|...|+.+++.+.++|..+|+|+++++++||....++++++|
T Consensus 328 ~~~~E~~~~~~~~~--~~~--------------~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP 391 (437)
T KOG1303|consen 328 FDVVEKLIGVKHPD--FKK--------------RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILP 391 (437)
T ss_pred HHHHHHHhccCCcc--ccc--------------cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHH
Confidence 99999998754321 100 12368999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 011737 423 MEMYIVRKEIKRGTICWFGLHLV-NLVCLLAALAAGCGSIQGVNQA 467 (478)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~v~g~~~si~~i~~~ 467 (478)
+++|++.+|++++..+|..+|.+ .++|+++++....++++.++.+
T Consensus 392 ~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 392 CLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 99999999999998999999988 7999999999999999888753
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-57 Score=438.72 Aligned_cols=388 Identities=16% Similarity=0.245 Sum_probs=332.4
Q ss_pred cccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--CccccccHHHHHHHh
Q 011737 31 RRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPN--SVKRNYTYRDAVKNY 108 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~--~~~~~~sy~~l~~~~ 108 (478)
++..|..++..|++|+++|+|+|++|+||+++||+.|.+..++++.++.|+++.+++|.++.. .+....+|+|.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 445789999999999999999999999999999999999999999999999999999842110 011246777776654
Q ss_pred ----------ccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhC
Q 011737 109 ----------LGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQ 178 (478)
Q Consensus 109 ----------~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~ 178 (478)
+||++|++++..+++.++|.|.+|+++++++++++.+. +..+ .++.+.++.+..+..+++++
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---~~~~-----~~s~~~~i~~~~~~~lll~~ 195 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---HSPG-----VLSVRLYILIQLPPLLLLNL 195 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---cCCC-----CccHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999872 1111 45667888888889999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHH
Q 011737 179 IPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIE 258 (478)
Q Consensus 179 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 258 (478)
+||+|.|+++|.++.++.+.- +++..++..++.+. .+ +.+...+..++..++|+.+|||+|+..+.|
T Consensus 196 Ir~Lk~Lsp~Sl~Anv~~~~g----~~ii~~y~~~~~~~---~~------~~~~~~~~~~~~lf~GtaifafEGig~VLP 262 (449)
T KOG1304|consen 196 IRNLKILSPFSLFANVFILVG----LAIIMYYLVQDLPP---TS------DLPAVTGWSGLPLFFGTAIFAFEGIGMVLP 262 (449)
T ss_pred HHhhHHhhHHHHHHHHHHHHH----HHHHHHHHHhccCC---cc------ccccccchhhhHHHHHHHHHHhccceEEEe
Confidence 999999999999999988753 33333443333321 11 223334445889999999999999999999
Q ss_pred HHHhhcCCCchHHHHH---HHHHHHHHHHHHHHHhhhhhhhhcccCccccccccccccCCchhHHHHHHHHHHHHHHHhh
Q 011737 259 IQDTLKSSPPEQEVMK---KANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAY 335 (478)
Q Consensus 259 i~~~m~~p~~~~~~~~---~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 335 (478)
++++||+| ++|+ +++..++.+++++|+.+|++||+.||+++++.|+.|+| + +|+.+.+++++++.++++|
T Consensus 263 lEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~ 335 (449)
T KOG1304|consen 263 LENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTY 335 (449)
T ss_pred hhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcC
Confidence 99999999 9999 99999999999999999999999999999999999999 5 8999999999999999999
Q ss_pred hhcccchHHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhh
Q 011737 336 QVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYW 415 (478)
Q Consensus 336 pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~~~ 415 (478)
|++++|..+.+++.+.++..+. +.++..+.+|..++++++.+|..+|+++.+++++||++++
T Consensus 336 pLQ~yv~~eIi~~~i~~k~~~~------------------~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s 397 (449)
T KOG1304|consen 336 PLQFYVPIEIIEPGIRKKFSEN------------------RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCS 397 (449)
T ss_pred chhhhhhHHHHHHhHHHhcCcc------------------hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHH
Confidence 9999999999999876643210 2347888999999999999999999999999999999999
Q ss_pred hHHhhhhHHHHHHHhcCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011737 416 PMTVYFPMEMYIVRKEIK---RGTICWFGLHLVNLVCLLAALAAGCGSIQGV 464 (478)
Q Consensus 416 ~l~fi~P~l~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~v~g~~~si~~i 464 (478)
.+++++|++++++.+.++ +++++++.+..++++|++..+.|||.|+.++
T Consensus 398 ~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 398 LLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999998764 4567888899999999999999999999764
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=4.2e-56 Score=455.02 Aligned_cols=403 Identities=17% Similarity=0.179 Sum_probs=315.5
Q ss_pred cccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCc
Q 011737 33 TGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGR 112 (478)
Q Consensus 33 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~ 112 (478)
.++..++++|++|+++|+|+|+||+||+++||+.|++++++++.++.|+.+++.++.++.+ ..||+|++++++||+
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~----~~sY~~la~~~~G~~ 134 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN----IRTYEGVARVLLGPW 134 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----CCCHHHHHHHHhCHH
Confidence 3466889999999999999999999999999999999999999999999999999866432 369999999999999
Q ss_pred ceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHHHH
Q 011737 113 KYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIA 192 (478)
Q Consensus 113 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~~~ 192 (478)
+++++++.+.+.++|+|++|+++.+|.++.+++....+. ..+.. ..++..+.++..++++|++++|++++++++|.++
T Consensus 135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~-~~~~~-~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPD-FLKQK-SGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-hhhhc-cCcEEeeeehhhhHhhhcccccchHHHHHHHHHH
Confidence 999999999999999999999999999998875311000 00000 0112233445667889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCcccccccccc-cCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCCchHH
Q 011737 193 ASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIG-LDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQE 271 (478)
Q Consensus 193 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 271 (478)
+.++++..+.+++..+.+..+++..+ .....+. .+........+++.++|+++|||.||.+++++++||||| +.+
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~--~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~--t~~ 288 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKN--VSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR--SVG 288 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccc--cccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhccc--chh
Confidence 98876543333333333222211100 0000000 011111112367899999999999999999999999987 668
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccCccccccccccccCCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhh
Q 011737 272 VMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWAG 351 (478)
Q Consensus 272 ~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~ 351 (478)
|+.+++..++.+++++|.++|+.||+.||++++++|+.|++. .++....+++++++++++++||++++|+|+.+++.+.
T Consensus 289 ~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~ 367 (467)
T PTZ00206 289 KFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIG 367 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhC
Confidence 999999999999999999999999999999999999999942 2345568889999999999999999999999988763
Q ss_pred ccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHhhhhHHHHHHHh-
Q 011737 352 NRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRK- 430 (478)
Q Consensus 352 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~~~~l~fi~P~l~~~~~~- 430 (478)
. +.+ +.+ .+++...+..++++++++|+++|+++.+++++||++++.++|++|+++|++..
T Consensus 368 ~--~~~---------~~~--------~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~ 428 (467)
T PTZ00206 368 W--DAR---------KVA--------FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGG 428 (467)
T ss_pred C--Ccc---------cCc--------hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 2 110 111 14566666677778899999999999999999999999999999999999842
Q ss_pred --cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011737 431 --EIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVN 465 (478)
Q Consensus 431 --~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~i~ 465 (478)
+++....+|+.+++++++|++.+++|||.++++.+
T Consensus 429 ~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 429 FTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred ccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 12222345567899999999999999999999876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=8.3e-50 Score=406.57 Aligned_cols=394 Identities=19% Similarity=0.205 Sum_probs=318.8
Q ss_pred cccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh---c--CCcCcc--c--cccH
Q 011737 31 RRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECY---R--APNSVK--R--NYTY 101 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~---~--~~~~~~--~--~~sy 101 (478)
.+++|..++.+++++..+|.|+|+||+||+++||++|++.+++++.++.||.+++.+++ + +++++. + ..+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999863 1 111221 1 1378
Q ss_pred HHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCC
Q 011737 102 RDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPN 181 (478)
Q Consensus 102 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~ 181 (478)
.|+++..+||+++.+..+...+++++.|+.|++..++++..+-. .++.+.|++++.++.+|++++|+
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~s 189 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPS 189 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccC
Confidence 99999999999999999999999999999999988887765411 34567788888899999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHH
Q 011737 182 FHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQD 261 (478)
Q Consensus 182 l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 261 (478)
+++++++|.++..+++....+++..++.+... .+.+. ....+...++.++++++|||++|..+|++++
T Consensus 190 l~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~-~~~~~-----------~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~ 257 (473)
T PLN03074 190 FHNYRIWSFLGLLMTTYTAWYMTIAALSHGQV-EGVKH-----------SGPTKLVLYFTGATNILYTFGGHAVTVEIMH 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCC-----------CCchhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 99999999999887664332332222222110 01100 1122344677888899999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccc--ccccccccCCchhHHHHHHHHHHHHHHHhhhhcc
Q 011737 262 TLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQG--NILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLA 339 (478)
Q Consensus 262 ~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 339 (478)
|||+| ++|+++...+...++.+|+.+|+.||+.|||++++ +.+.|+| ++.+ ..+++++++++++.+||+++
T Consensus 258 ~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~~-~~~~~~~~~i~~~~sy~l~~ 330 (473)
T PLN03074 258 AMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSGW-RDAAVILMLIHQFITFGFAC 330 (473)
T ss_pred hccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--CchH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999 89999999999999999999999999999999764 5677787 3333 68999999999999999999
Q ss_pred cchHHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHh
Q 011737 340 QPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTV 419 (478)
Q Consensus 340 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~~~~l~f 419 (478)
+|+.+..|+....+ + + |....|+.+|+.+++.++++|..+|+|+.+++++||++++.++|
T Consensus 331 ~p~~~~~e~~~~~~--~-----~-------------k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~ 390 (473)
T PLN03074 331 TPLYFVWEKAIGVH--D-----T-------------KSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVY 390 (473)
T ss_pred hhHHHHHHHHhccc--c-----c-------------ccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 99999888875321 0 0 22367899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcCC-------------CchhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccccccc
Q 011737 420 YFPMEMYIVRKEIK-------------RGTIC--WFGLHLVNLVCLLA-ALAAGCGSIQGVNQALHTYKLFKF 476 (478)
Q Consensus 420 i~P~l~~~~~~~~~-------------~~~~~--~~~~~~~~~~g~~~-~v~g~~~si~~i~~~~~~~~~~~~ 476 (478)
++|+++|++.++++ .++++ .+.|+++++++.++ .+.|+|+|+.++++++++|+.|+|
T Consensus 391 i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~ 463 (473)
T PLN03074 391 IIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAK 463 (473)
T ss_pred HHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhh
Confidence 99999999865432 11222 36788888765555 589999999999999999998876
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.3e-53 Score=432.47 Aligned_cols=402 Identities=24% Similarity=0.346 Sum_probs=327.2
Q ss_pred ccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccC
Q 011737 32 RTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGG 111 (478)
Q Consensus 32 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~ 111 (478)
||+|++++++|++|+++|+|+|++|++|+++||+.|++++++++.++.||.+++.++.++.+.+++..+|+|++++++||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 68899999999999999999999999999999999999999999999999999999976532123357999999999999
Q ss_pred cceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHHH
Q 011737 112 RKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTI 191 (478)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~~ 191 (478)
++++++++++.+.++|.|++|+++.+|++.++.+....+ ...++..+.++..++++|++++|++++++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~ 153 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSIL 153 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHHhhh
Confidence 999999999999999999999999999999997653322 1345667777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCCchH-
Q 011737 192 AASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQ- 270 (478)
Q Consensus 192 ~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~- 270 (478)
+.++++....+.+... ......++.+.... +.....+.++++.++++++|||.||.++|++++|||+| ++
T Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~--~~~ 224 (409)
T PF01490_consen 154 GLFSIFYFIVIVVIYI-ISYGPGEPSGVPSP------PVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP--SKF 224 (409)
T ss_pred hhhccceeeeeeccee-eeeecccccccccc------cccccchhhHHHHhhhhhhhhhhcccccceeeeeccCC--ccc
Confidence 9998775311111111 11111111111111 11223455689999999999999999999999999998 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccccccccccccCCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHh
Q 011737 271 EVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWA 350 (478)
Q Consensus 271 ~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~ 350 (478)
++++++...++.+++++|+.+|+.||++||+++++|++.|+| ++++...++++++.++++.+||++.+|.++.+++.+
T Consensus 225 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~ 302 (409)
T PF01490_consen 225 KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLL 302 (409)
T ss_pred cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--CcccccccccccchhhhhhccccccchhHhhhhhhe
Confidence 345599999999999999999999999999999999999998 445788999999999999999999999999999987
Q ss_pred hccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHhhhhHHHHHHHh
Q 011737 351 GNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRK 430 (478)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~~~~l~fi~P~l~~~~~~ 430 (478)
.++.+.. ++...+ ..+.+++|+.+|+.+++.+.++|+.+|+++.+++++|++++..++|++|+++|+|.+
T Consensus 303 ~~~~~~~----~~~~~~------~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~ 372 (409)
T PF01490_consen 303 FKRAASS----RDSPKN------TPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLF 372 (409)
T ss_pred ecccccc----cccccc------ccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhh
Confidence 6420000 000000 012347899999999999999999999999999999999999999999999999998
Q ss_pred cCCCchhHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 011737 431 EIKRGTICW-----FGLHLVNLVCLLAALAAGCGSI 461 (478)
Q Consensus 431 ~~~~~~~~~-----~~~~~~~~~g~~~~v~g~~~si 461 (478)
++++.+.++ ..++.++++|++.++.|+|.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 373 KRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred cccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 887643333 3357778889999999999875
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-49 Score=362.25 Aligned_cols=408 Identities=16% Similarity=0.154 Sum_probs=347.6
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcC-c---cccccHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNS-V---KRNYTYRD 103 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~-~---~~~~sy~~ 103 (478)
++.+.+++-+||.+|..|++-|.-+++||+|....||+ ++..++.++.+|+||..+|++|+.+.++ | +...||.+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 55567899999999999999999999999999999985 9999999999999999999999876655 2 23479999
Q ss_pred HHHHhccCc-ceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCC
Q 011737 104 AVKNYLGGR-KYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNF 182 (478)
Q Consensus 104 l~~~~~G~~-~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l 182 (478)
+++.+++|. |++.+.+.+...+.++|+.|.+..+|.+..-+ +.. ..+...|+++....++|.+++|++
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~f-----P~~------svd~~sWm~i~~a~LLpc~FLk~L 258 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCF-----PGL------SVDKASWMMITSASLLPCSFLKDL 258 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccC-----CCC------CccccchhhhhhHHHhhhHHHHHH
Confidence 999999986 56899999999999999999999999998653 322 456778999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHh
Q 011737 183 HKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDT 262 (478)
Q Consensus 183 ~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 262 (478)
+-.+.+|++..++.++.-++++.+|.....+ ..|+ ..+...+...++.++|+++|+|..|...|++..+
T Consensus 259 k~VS~lSf~ct~sH~viN~i~v~YCLs~~~d----------W~ws-kv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN 327 (524)
T KOG4303|consen 259 KIVSRLSFFCTISHLVINLIMVLYCLSFVSD----------WSWS-KVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN 327 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------ccce-eEEEEEEcccCceEEEEEEEeeeceeeccccccc
Confidence 9999999999999988888888877664322 1121 1233444457778899999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccccccccccccCCchhHHHHHHHHHHHHHHHhhhhcccch
Q 011737 263 LKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPV 342 (478)
Q Consensus 263 m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 342 (478)
|++| .+|.-.+.++-+.+.++-..+|..||++|+++|+..|++|+| +. -...++|+++++..+++||+-.+..
T Consensus 328 M~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp--~q-sfk~~VN~fLV~KALLSYPLPfyAA 400 (524)
T KOG4303|consen 328 MKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP--NQ-SFKILVNLFLVVKALLSYPLPFYAA 400 (524)
T ss_pred cCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC--cc-chhhhhhHHHHHHHHHcCCchHHHH
Confidence 9999 899999999999999999999999999999999999999998 32 3568999999999999999999999
Q ss_pred HHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHhhhh
Q 011737 343 FGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFP 422 (478)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~~~~l~fi~P 422 (478)
.+.+|+.+.+..|+..|.+ -++ | || +.+.+.+.+|.++++.+.++|+.+|.+..+++++|++.++.++||.|
T Consensus 401 velLe~nlF~g~p~t~Fps-cys---~--Dg--~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP 472 (524)
T KOG4303|consen 401 VELLENNLFLGYPQTPFPS-CYS---P--DG--SLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWP 472 (524)
T ss_pred HHHHHHhhhcCCCCCCCce-eeC---C--Cc--chhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHH
Confidence 9999998877655544421 111 1 12 22356778899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011737 423 MEMYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQALHTYKL 473 (478)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~i~~~~~~~~~ 473 (478)
+++|+++..+.....+..++..+++.|..+++.|.|-|-.++++++.+..+
T Consensus 473 ~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 473 ALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred HHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 999999987765444556788899999999999999999999999887654
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-44 Score=358.03 Aligned_cols=402 Identities=17% Similarity=0.247 Sum_probs=324.2
Q ss_pred CcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhc
Q 011737 30 SRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYL 109 (478)
Q Consensus 30 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~ 109 (478)
.+++.|...+++|+.|+++|+|++++|+||++.|++.|++++.+++.++.++.+++.+|.+..+ + .+|++++++.+
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~--~--~ty~~l~~~~~ 77 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG--E--RTYSSLGDLIF 77 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC--C--CCHHHHHHHHc
Confidence 3556688999999999999999999999999999999999999999999999999999976542 2 39999999999
Q ss_pred cCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCC-chhHhHHHHHHHhhCCCCCCcchHH
Q 011737 110 GGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYN-PYMMALGIVEILLSQIPNFHKLSWL 188 (478)
Q Consensus 110 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~pl~~~~~l~~l~~~ 188 (478)
|+.++............| |++|+++++|.++.+.+........... ..+++ .+++...+++.||++.|+++++++.
T Consensus 78 g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~t 154 (411)
T KOG1305|consen 78 GKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIILPLSLLKNLDSLKYT 154 (411)
T ss_pred CCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHHHHHHHHhhhhHHHH
Confidence 999977777777777777 7999999999999776542211111001 12222 3567778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCCc
Q 011737 189 STIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPP 268 (478)
Q Consensus 189 s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 268 (478)
|.++..+...+.++.+...+.. ........ ++.++....++.+.++++++|||.||.|+.++++|||||
T Consensus 155 S~~s~~~~~~fv~~vv~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~-- 223 (411)
T KOG1305|consen 155 SALSLASVVYFVVLVVYKYFQG----PCALGRLS-----YLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR-- 223 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----ccccCCcc-----cccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--
Confidence 9999999886544433332221 11111111 012222333688999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccccccccccccCCch----hHHHHHHHHHHHHHHHhhhhcccchHH
Q 011737 269 EQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPF----WLIDLANFFIVVHLLGAYQVLAQPVFG 344 (478)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~~~~~~~----~~~~~~~~~~~i~~~~s~pl~~~p~~~ 344 (478)
+++++.++...+...++++|..+|..||+.||+++.+|++.++|..... +....++..+.++.+.++|+..+|+|.
T Consensus 224 s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~ 303 (411)
T KOG1305|consen 224 SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRM 303 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 8899999999999999999999999999999999999999999843222 235789999999999999999999999
Q ss_pred HHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHhhhhHH
Q 011737 345 VVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPME 424 (478)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~~~~l~fi~P~l 424 (478)
.+++...+..++. ++ ....++..++..++..+.+.|+.+|+++.+++++||+++..++||+|++
T Consensus 304 ~l~~~~~~~~~~~----~~------------~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~ 367 (411)
T KOG1305|consen 304 NLDELLFPYQPGL----TS------------FSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPAL 367 (411)
T ss_pred HHHHHhcccCCCC----CC------------ccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHH
Confidence 9888775543321 00 1225788899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011737 425 MYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQA 467 (478)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~i~~~ 467 (478)
+|++.+++ ..+.....++..++++..++.|++.-+.++..+
T Consensus 368 ~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 368 YYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred hhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999887 223445678888999999999999888887764
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-31 Score=269.21 Aligned_cols=394 Identities=15% Similarity=0.133 Sum_probs=285.7
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKN 107 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~ 107 (478)
+..+.+.+..++++++.++++|+|+|++|++++..|++++++++++.+.+++++.+++.|+..+.+.+ ..+|.+++++
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~--~~~~~~~~~~ 80 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG--KASITSLVED 80 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--cccHHHHHHH
Confidence 34556778899999999999999999999999999999999999999999999999999997654321 1499999999
Q ss_pred hccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchH
Q 011737 108 YLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSW 187 (478)
Q Consensus 108 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~ 187 (478)
.+||+++++.++.+.+.+++.+++|.+..+|.+++.++... +. + ..++....+++.+++.++++.++...++.
T Consensus 81 ~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~-~~---~---~~~r~~~~lif~~~~~~l~~~~~~~~lk~ 153 (415)
T COG0814 81 YLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQF-GL---N---PLPRKLGSLIFALVLAFLSWLGTLAVLKI 153 (415)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhc-cc---C---CcchHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 99999999999999999999999999999999999987521 11 0 13455666777788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCC
Q 011737 188 LSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSP 267 (478)
Q Consensus 188 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 267 (478)
.+.+....+.... ..+++.....++... ...+ ...+....+...++|+++|||+||+++|++++|||++
T Consensus 154 ts~l~~~~v~~~~----~l~~~~~~~~~~~~l--~~~~----~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~- 222 (415)
T COG0814 154 TSLLVFGKVIYLV----LLVVYLIPHWNPANL--FALP----SASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKN- 222 (415)
T ss_pred HHHHHHHHHHHHH----HHHHHHhcccCHHHH--hccc----ccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccc-
Confidence 9998888776532 222332222111110 0000 0001333467899999999999999999999999987
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccccccccccccCCchhHHHHHHHHHHHHHHHhhhhcccchHHH--
Q 011737 268 PEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGV-- 345 (478)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~-- 345 (478)
++++.+|+...+..+..++|..+++.+|..+|+++.++++++++ +.+. ...+......+...++|.+.++.+..
T Consensus 223 -~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~--~~~~-~l~~~~~~~~~~~~~~~~~~f~~~Ai~t 298 (415)
T COG0814 223 -SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE--QNIS-LLSALAGVINSPILSIALNIFALFAIAT 298 (415)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC--chHH-HHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 44459999999999999999999999999999999999999986 2221 12222222222334555554444433
Q ss_pred ------------HHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhh
Q 011737 346 ------------VESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIA 413 (478)
Q Consensus 346 ------------l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~ 413 (478)
+++.+.+ .++ ...|. .+.....+......+......+...+..+.++..+|+..
T Consensus 299 SFlgv~lg~~~~~~~~~~~--~~~------~~~r~------~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i 364 (415)
T COG0814 299 SFLGVYLGLFEGLADLFKK--SNS------KPGRK------KTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPI 364 (415)
T ss_pred HHhCchhhHHHhhhHHHHh--ccC------cccch------hhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 3333321 000 00000 011123333445556667777778888999999999999
Q ss_pred hhhHHhhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011737 414 YWPMTVYFPMEMYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCG 459 (478)
Q Consensus 414 ~~~l~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~ 459 (478)
...+.++.|...+.|....++.+.++....+++++|+..++...+.
T Consensus 365 ~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~ 410 (415)
T COG0814 365 IPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLA 410 (415)
T ss_pred HHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887766554432245667777777776665554
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.94 E-value=7.5e-24 Score=209.71 Aligned_cols=357 Identities=13% Similarity=0.082 Sum_probs=249.2
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKN 107 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~ 107 (478)
..++++++.+++++.+.+++||+|+|++|.+.++.|..++++++++++..+.||..++.|+..+.++ ..++..++++
T Consensus 5 ~~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~---g~~~~tma~~ 81 (414)
T PRK10483 5 TTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI---GSSFDTITKD 81 (414)
T ss_pred ccccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999998544322 3699999999
Q ss_pred hccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchH
Q 011737 108 YLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSW 187 (478)
Q Consensus 108 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~ 187 (478)
.+||+|+.+..++..+..|+.+++|+.-.++.+++.++.. +. ..+...-.+++.++.-.+... ..+...+
T Consensus 82 ~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~-------~i~~~~~~llF~~~~~~iv~~-gt~~vd~ 151 (414)
T PRK10483 82 LLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SL-------NVPARAAGFGFALLVAFVVWL-STKAVSR 151 (414)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CC-------CCcHHHHHHHHHHHHHHHHHh-hhhHHHH
Confidence 9999999999999999999999999999999999987531 00 112222223333333333222 2344445
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCC
Q 011737 188 LSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSP 267 (478)
Q Consensus 188 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 267 (478)
++..-....+...++.+. ......+. ....+.++ ...........+++++++||+.|.++|++.+++++.
T Consensus 152 ~n~~l~~~~i~~f~~~~~-~l~~~i~~----~~L~~~~~----~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d- 221 (414)
T PRK10483 152 MTAIVLGAKVITFFLTFG-SLLGHVQP----ATLFNVAE----SNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKD- 221 (414)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhhcCH----HHHhcccc----ccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcC-
Confidence 554433333221111111 11111110 00111111 011111246689999999999999999999999853
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcc-------ccc---ccccccc-CCchhHHHHHHHHHHHHHHHhhh
Q 011737 268 PEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHA-------QGN---ILTGFGF-YEPFWLIDLANFFIVVHLLGAYQ 336 (478)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~-------~~~---il~~~~~-~~~~~~~~~~~~~~~i~~~~s~p 336 (478)
.++.+|++..+..+..++|+..-.......+++. .+| .+..+.. .+..+...+..++..+.+.+||-
T Consensus 222 --~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 222 --PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999964443333322211 111 1122221 13445667788888999999998
Q ss_pred hcccchHHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHhhhhhh
Q 011737 337 VLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPF-FNEVLAFLGAIAYW 415 (478)
Q Consensus 337 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~vi~l~Ga~~~~ 415 (478)
=.....+|.+.+.++.+ ++ ...|........++.++++...|+ |-..++..|.. ..
T Consensus 300 Gv~LGL~d~l~D~~k~~--~~--------------------~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~ 356 (414)
T PRK10483 300 GVTLGLFDYLADLFGFD--DS--------------------AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-AT 356 (414)
T ss_pred HHHHHHHHHHHHHhCCC--Cc--------------------cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HH
Confidence 77777888888877532 11 012444455778899999999997 88999999966 67
Q ss_pred hHHhhhhHHHHHHHhcC
Q 011737 416 PMTVYFPMEMYIVRKEI 432 (478)
Q Consensus 416 ~l~fi~P~l~~~~~~~~ 432 (478)
.+.-++|+++.+|.||+
T Consensus 357 il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 357 IWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88899999999999976
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=1.3e-23 Score=209.98 Aligned_cols=353 Identities=15% Similarity=0.166 Sum_probs=246.0
Q ss_pred ccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccC
Q 011737 32 RTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGG 111 (478)
Q Consensus 32 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~ 111 (478)
++.+.+++++.+.++++|+|+|+||.+.+..|..++++++++++.+++++..++.|...+.++ ..+|.+++++.+||
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~---~~~~~~~a~~~lG~ 77 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE---GSSLTSMAEKYLGK 77 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCHHHHHHHHhCh
Confidence 356789999999999999999999999999999999999999999999999999998654332 36999999999999
Q ss_pred cceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHHH
Q 011737 112 RKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTI 191 (478)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~~ 191 (478)
+++++..+...+..+..+++|..-.++.+++.++..... +.+......++.++...+... ..+...+++..
T Consensus 78 ~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~--------~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~ 148 (394)
T PF03222_consen 78 KGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT--------DLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRV 148 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 999999999999999999999999999999998653210 122222222222222222222 22233344433
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCCchHH
Q 011737 192 AASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQE 271 (478)
Q Consensus 192 ~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 271 (478)
-+...+.. ....++.- .++ .+.+ .... ..+...++...+.+++++++||+.|.++|++.+.+++ ++|
T Consensus 149 lv~~~i~~---~~~l~~~~-~p~--~~~~--~L~~--~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~---d~~ 215 (394)
T PF03222_consen 149 LVFGMIIS---FIILVVYL-IPH--WNPS--NLLD--APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGG---DPK 215 (394)
T ss_pred HHHHHHHH---HHHHHHHH-hhh--cCHH--Hhhc--cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCc---cHH
Confidence 33332221 11111111 111 1100 0000 0011223336678999999999999999999999984 348
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcc-----------cCcccc--ccccccccCCchhHHHHHHHHHHHHHHHhhhhc
Q 011737 272 VMKKANTIATFTATTLYLMCGCLGYAAL-----------GNHAQG--NILTGFGFYEPFWLIDLANFFIVVHLLGAYQVL 338 (478)
Q Consensus 272 ~~~~~~~~a~~~~~~lY~~~g~~gy~~f-----------g~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 338 (478)
+.+|++..+..+..++|+..-...-... +++..+ ..+.+.. ++.+...+..++..+++.+||--.
T Consensus 216 k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv 293 (394)
T PF03222_consen 216 KIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVS--GSPWISILGSIFAFFAIATSFLGV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986433222211 111111 1122221 345667788999999999999877
Q ss_pred ccchHHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHhhhhhhhH
Q 011737 339 AQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPF-FNEVLAFLGAIAYWPM 417 (478)
Q Consensus 339 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~vi~l~Ga~~~~~l 417 (478)
..-.+|.+.+.++. +++ ...|........++.+++|...|+ |...+++.| ...+.+
T Consensus 294 ~lgl~d~l~d~~k~--~~~--------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il 350 (394)
T PF03222_consen 294 YLGLFDFLADLFKL--KNN--------------------SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAIL 350 (394)
T ss_pred HHHHHHHHHHHHcC--Ccc--------------------ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHH
Confidence 77788888887643 110 123455556667788999999996 889999999 999999
Q ss_pred HhhhhHHHHHHHhcCCC
Q 011737 418 TVYFPMEMYIVRKEIKR 434 (478)
Q Consensus 418 ~fi~P~l~~~~~~~~~~ 434 (478)
..++|+++.+|.|++++
T Consensus 351 ~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 351 LGILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHHHHHHcccC
Confidence 99999999999987654
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=1.2e-23 Score=208.03 Aligned_cols=356 Identities=14% Similarity=0.082 Sum_probs=244.2
Q ss_pred cccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhcc
Q 011737 31 RRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLG 110 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G 110 (478)
++|.+..+.++.+.+++||+|+|+||.+.++.|..++++++++++..+.||..++.|+..+.++ ..++..++++.+|
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~---g~~l~tma~~~LG 82 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV---GSSFNTITKDLIG 82 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHcC
Confidence 3444778899999999999999999999999999999999999999999999999998554332 4699999999999
Q ss_pred CcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHH
Q 011737 111 GRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLST 190 (478)
Q Consensus 111 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~ 190 (478)
|+|+.+..++..+..|+.+++|+.-.++.+++.++.. . +. +.+.....+++.++.-.+.... .+...+.+.
T Consensus 83 ~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~-~---~~----~i~~~~~~llF~~~~~~~v~~g-t~~vd~~nr 153 (415)
T PRK09664 83 NTWNIISGITVAFVLYILTYAYISANGAIISETISMN-L---GY----HANPRIVGICTAIFVASVLWIS-SLAASRITS 153 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhh-c---cC----CCcHHHHHHHHHHHHHHHHHhc-hhHHHHHHH
Confidence 9999999999999999999999999999999987531 0 00 1122222233333333333222 244444443
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhh-HHHHHhHHHHHHhhcchhHHHHHHhhcCCCch
Q 011737 191 IAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTW-RIFQAIGNMAFACSYAAILIEIQDTLKSSPPE 269 (478)
Q Consensus 191 ~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 269 (478)
+-....+... +..+.......+. ......++. ......+ ....++|++++||+.|.++|++.+.+++.
T Consensus 154 ~l~~~~ii~f-~~~~~~l~~~i~~----~~L~~~~~~---~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d--- 222 (415)
T PRK09664 154 LFLGLKIISF-VIVFGSFFFQVDY----SILRDATST---TAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR--- 222 (415)
T ss_pred HHHHHHHHHH-HHHHHHHhhcccH----HHHhcCccc---cccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc---
Confidence 3332222111 1111111111110 001111100 0001112 35679999999999999999999998753
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--hhhhhhh---------cccCccccccccccccCCchhHHHHHHHHHHHHHHHhhhhc
Q 011737 270 QEVMKKANTIATFTATTLYLM--CGCLGYA---------ALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVL 338 (478)
Q Consensus 270 ~~~~~~~~~~a~~~~~~lY~~--~g~~gy~---------~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 338 (478)
.++.+|++.....+..++|.. .+++|-. ..|+++..-+..-....+..+...+.+++..+.+.+||-=.
T Consensus 223 ~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv 302 (415)
T PRK09664 223 KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGV 302 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999889863 3333321 22323322111111112455777888899999999999887
Q ss_pred ccchHHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHhhhhhhhH
Q 011737 339 AQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPF-FNEVLAFLGAIAYWPM 417 (478)
Q Consensus 339 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~vi~l~Ga~~~~~l 417 (478)
....+|.+.+.++.+ +++ ..|........++.++.+...|+ |-..++..|.. .+++
T Consensus 303 ~LGL~D~l~D~~~~~--~~~--------------------~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il 359 (415)
T PRK09664 303 TLGLFDYLADLFKID--NSH--------------------GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIW 359 (415)
T ss_pred HHHHHHHHHHHhCCC--Ccc--------------------ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHH
Confidence 777888888877432 110 12444455778899999999997 88999999985 6799
Q ss_pred HhhhhHHHHHHHhcC
Q 011737 418 TVYFPMEMYIVRKEI 432 (478)
Q Consensus 418 ~fi~P~l~~~~~~~~ 432 (478)
.-++|+++.+|.||+
T Consensus 360 ~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 360 AVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999976
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.93 E-value=3.2e-23 Score=206.19 Aligned_cols=348 Identities=13% Similarity=0.119 Sum_probs=244.7
Q ss_pred cHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcce
Q 011737 35 TVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKY 114 (478)
Q Consensus 35 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~ 114 (478)
+..++++.+.++++|+|+|+||.+....|.+++++++++++.+..|+.+++.|+..+.++ ..++.+++++.+||+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~---~~~~~~~a~~~LG~~g~ 80 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA---DTGLGTLAKRYLGRYGQ 80 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CCCHHHHHHHHhChHHH
Confidence 678999999999999999999999999999999999999999999999999997554332 36899999999999999
Q ss_pred eehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHHHHHH
Q 011737 115 KALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAAS 194 (478)
Q Consensus 115 ~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~~~~~ 194 (478)
++..+...+..+..+++|..-.++.+.+.++.+..++ .+.....+++.++.... .....+...+++.+-+.
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~--------i~~~~~~l~F~~~~~~i-v~~g~~~v~~~n~~L~~ 151 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGIS--------MSPTAGVLLFTLVAGGV-VCVGTSSVDLFNRFLFS 151 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCC--------CChHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Confidence 9999999999999999999999999988876532221 11122222222222222 22222334444333222
Q ss_pred HHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCCchHHHHH
Q 011737 195 MSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQEVMK 274 (478)
Q Consensus 195 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 274 (478)
..+.. .+..+.. ..++-. .......+|+ .+ -...+++++.+||+.|.++|++.+.+++. .++.+
T Consensus 152 ~~ii~---~~~~~~~-l~p~~~-~~~L~~~~~~------~~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~ 215 (403)
T PRK15132 152 AKIIF---LVVMLAL-MMPHIH-KVNLLTLPLQ------QG--LALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLR 215 (403)
T ss_pred HHHHH---HHHHHHH-HHHhcC-HHHHhcCCcc------cc--HHHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHH
Confidence 22211 1111111 111100 0001100110 01 26789999999999999999999999753 48999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccCcc-----cc-----cccccccc-CCchhHHHHHHHHHHHHHHHhhhhcccchH
Q 011737 275 KANTIATFTATTLYLMCGCLGYAALGNHA-----QG-----NILTGFGF-YEPFWLIDLANFFIVVHLLGAYQVLAQPVF 343 (478)
Q Consensus 275 ~~~~~a~~~~~~lY~~~g~~gy~~fg~~~-----~~-----~il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 343 (478)
|++..+..+..++|+..-.......+.+. ++ ++++.+.. .+..+...++.++..+++.+||--.....+
T Consensus 216 k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~ 295 (403)
T PRK15132 216 WVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLF 295 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999966555555444331 11 22333221 134567788889999999999987777788
Q ss_pred HHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHhhhhhhhHHhhhh
Q 011737 344 GVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPF-FNEVLAFLGAIAYWPMTVYFP 422 (478)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~vi~l~Ga~~~~~l~fi~P 422 (478)
|.+.+.+.++ ++ ...|.....+..+++++++...|+ +...+++.|. ..+.+.+++|
T Consensus 296 d~l~d~~~~~--~~--------------------~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP 352 (403)
T PRK15132 296 DYLADLFQRR--NT--------------------VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLP 352 (403)
T ss_pred HHHHHHHccC--cc--------------------ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 8888877431 10 022555667888999999999997 7889999886 5789999999
Q ss_pred HHHHHHHhcCC
Q 011737 423 MEMYIVRKEIK 433 (478)
Q Consensus 423 ~l~~~~~~~~~ 433 (478)
+++.+|.|+++
T Consensus 353 ~~m~~~~r~~~ 363 (403)
T PRK15132 353 SLLVWQSRKQN 363 (403)
T ss_pred HHHHHHHhhcC
Confidence 99999998764
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.92 E-value=2.3e-23 Score=209.81 Aligned_cols=346 Identities=12% Similarity=0.069 Sum_probs=246.1
Q ss_pred HHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcceeehH
Q 011737 39 ASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALG 118 (478)
Q Consensus 39 a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~ 118 (478)
++...+++++|+|++++|.+++..|...+++.+++.+.++.++...+.|+..+. |+ ..++.+++++.+||++++++.
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~-p~--~~~~~~~~~~~~G~~~g~~~~ 78 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY-PG--GASFNTIAKDLLGKTGNIIAG 78 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC--CCCHHHHHHHHhCHHHHHHHH
Confidence 345678999999999999999999988899999999999999999999985432 22 359999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 011737 119 LVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFS 198 (478)
Q Consensus 119 ~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 198 (478)
+..++.++..+.+|.+..++++..+++..... ..+.....++..+++.+ ...+..+...+++.+.+...+.
T Consensus 79 ~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~v~~~-l~~~G~~~~~~v~~i~~~~~l~ 149 (381)
T TIGR00837 79 LSLLFVLYILTYAYISGGGSILSRLIGEYFGF--------PWSARAIVLIFTVLFGS-FVWLSTSAVDRITRVLIFGKII 149 (381)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887632111 11112222223333333 3455667777777776666554
Q ss_pred HHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCCchHHHHHHHHH
Q 011737 199 YAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQEVMKKANT 278 (478)
Q Consensus 199 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 278 (478)
..++.+...+.+. + . .+..+.. .......+...+++...++|++|.+++++.+|++++ +||.+|++.
T Consensus 150 ~l~~~ii~~~~~~-~--~--~~~~~~~-----~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii 216 (381)
T TIGR00837 150 AFALVFSGLLPHV-K--G--DLLLDVA-----LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSIL 216 (381)
T ss_pred HHHHHHHHHHhhc-c--H--HHHhcCc-----cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHH
Confidence 3222222222211 1 1 0011100 001122366789999999999999999999999854 489999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCcccc-------c---ccccccc-CCchhHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 011737 279 IATFTATTLYLMCGCLGYAALGNHAQG-------N---ILTGFGF-YEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVE 347 (478)
Q Consensus 279 ~a~~~~~~lY~~~g~~gy~~fg~~~~~-------~---il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~ 347 (478)
.+..+++++|+++........+.+.-. + ..+.+.. .+..+...+..++..+.+.+++.-.....++.+.
T Consensus 217 ~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~ 296 (381)
T TIGR00837 217 IGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLA 296 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876665555443211 1 1111110 1234566788889999999999988888888887
Q ss_pred HHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchH-HHHHHHhhhhhhhHHhhhhHHHH
Q 011737 348 SWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFN-EVLAFLGAIAYWPMTVYFPMEMY 426 (478)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~-~vi~l~Ga~~~~~l~fi~P~l~~ 426 (478)
+.+++. + + + .+|.....+..++..++|.+.|+.. ..++..| +....+.+++|++++
T Consensus 297 ~~~~~~--~-----~-------------~--~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~ 353 (381)
T TIGR00837 297 DLFKFD--D-----S-------------K--KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLA 353 (381)
T ss_pred HHhCCC--c-----c-------------c--CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 776441 1 0 0 1244556667788899999999755 9999999 889999999999999
Q ss_pred HHHhcC
Q 011737 427 IVRKEI 432 (478)
Q Consensus 427 ~~~~~~ 432 (478)
+|.||+
T Consensus 354 ~~~r~~ 359 (381)
T TIGR00837 354 WKARKK 359 (381)
T ss_pred HHHHhc
Confidence 998865
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.90 E-value=1.9e-20 Score=185.28 Aligned_cols=388 Identities=13% Similarity=0.099 Sum_probs=255.4
Q ss_pred HHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcceee
Q 011737 37 WTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKA 116 (478)
Q Consensus 37 ~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~ 116 (478)
......+.++.+|+|+|+||-.....|.++.++++++++.+++++.+.+.|...+.++ +..++.+++++.|||+++.+
T Consensus 22 ~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~--~~~~i~~v~~~~lG~~g~~i 99 (443)
T PRK13629 22 TTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN--PSGNITETVEEHFGKTGGVV 99 (443)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CCCCHHHHHHHHcChhHHHH
Confidence 4456999999999999999999999999999999999999999999999996433312 13699999999999999999
Q ss_pred hHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 011737 117 LGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMS 196 (478)
Q Consensus 117 ~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 196 (478)
..++.++..+..+.+|...+.+.+++.+..+ .+.. ..++....+++.+++....... -+.+-+++..-+...
T Consensus 100 ~~ilYff~ly~ll~aY~~~itn~l~sfl~~q----l~~~---~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~~ 171 (443)
T PRK13629 100 ITFLYFFAICPLLWIYGVTITNTFMTFWENQ----LGFA---PLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWPF 171 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCcC---CccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 9999999999999999998888888765432 1111 1122222233333333222222 233333433322222
Q ss_pred HHHHHHHHhhhhhhhhccCCCcccccccccc--cCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCC-------C
Q 011737 197 FSYAGIGMGLSFAKIVSGHGEKTTLTGVEIG--LDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSS-------P 267 (478)
Q Consensus 197 ~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-------~ 267 (478)
+. ..+..+++-. ++-. .......+++ ++............++|+++|||+.|+++|++...+|+. .
T Consensus 172 i~---~l~~l~~~Li-P~w~-~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~ 246 (443)
T PRK13629 172 IA---SLVLISLSLI-PYWN-SAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRD 246 (443)
T ss_pred HH---HHHHHHHHHH-HHcC-HHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccc
Confidence 21 1222222211 1100 0001111110 000000111246789999999999999999999884322 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcc-----cccc--c----cccccC-Cc-----hhHHHHHHHHHHHH
Q 011737 268 PEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHA-----QGNI--L----TGFGFY-EP-----FWLIDLANFFIVVH 330 (478)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~-----~~~i--l----~~~~~~-~~-----~~~~~~~~~~~~i~ 330 (478)
...+|.+|++.++..+..++|+..-+.+-...+++. +.|+ + +.++.. +. .+...+..++..++
T Consensus 247 ~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~A 326 (443)
T PRK13629 247 FTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVA 326 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHH
Confidence 125899999999999999999988887777766543 1122 2 222210 11 34667777777888
Q ss_pred HHHhhhhcccchHHHHHHHhhc-c-CCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHH
Q 011737 331 LLGAYQVLAQPVFGVVESWAGN-R-WPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAF 408 (478)
Q Consensus 331 ~~~s~pl~~~p~~~~l~~~~~~-~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l 408 (478)
+.+||--.....+|.+.....+ . .+++ + + .+.+..+.....++++.++..++..|++-.++.-
T Consensus 327 I~TSFlGv~LGl~E~l~gl~~~~~~~~~~----~----~-------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~ 391 (443)
T PRK13629 327 IFKSFFGHYLGTLEGLNGLILKFGYKGDK----T----K-------VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEA 391 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc----c----c-------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 8899877777788888877632 1 1110 0 0 0123456667778888999999999999999998
Q ss_pred HhhhhhhhHHhhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 011737 409 LGAIAYWPMTVYFPMEMYIVRKEIKRGTICWFGLHLVNLVCLLAALA 455 (478)
Q Consensus 409 ~Ga~~~~~l~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ 455 (478)
+|+.....+.|++|.+.-+|...-++.+.+ ..++++.+.|++....
T Consensus 392 ~~gPiia~il~l~P~y~i~kvp~l~~yr~~-~~n~fv~~~Gl~~i~~ 437 (443)
T PRK13629 392 MGAPIIASLLCLLPMYAIRKAPSLAKYRGR-LDNVFVTVIGLLTILN 437 (443)
T ss_pred hhhHHHHHHHHHHHHHHHHccHHHHHhCCC-chhHHHHHHHHHHHHH
Confidence 888888999999999999988755554332 2466666666654433
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.87 E-value=6.3e-20 Score=183.20 Aligned_cols=378 Identities=10% Similarity=0.026 Sum_probs=253.0
Q ss_pred HHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHHHhccCcce
Q 011737 36 VWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVKNYLGGRKY 114 (478)
Q Consensus 36 ~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~~~~G~~~~ 114 (478)
..+..+.+.++++|+|+|++|....+.||+..++..++...+++++.+++.|.. .+++| ..++.|++++.|||+++
T Consensus 5 d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p---~~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 5 DTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP---CEDITEVVEEHFGKNWG 81 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHcCHHHH
Confidence 356789999999999999999999999999889999999999999999999973 33333 36999999999999999
Q ss_pred eehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHHHHHH
Q 011737 115 KALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAAS 194 (478)
Q Consensus 115 ~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~~~~~ 194 (478)
.+..+..++..+..+.+|....++.+.+.+..... . + ...+....+..+++.-.......+.+.+++.+-+.
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~-~---~----~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~ 153 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLG-T---A----PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVF 153 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C---C----CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 99999999999999999999999998888754211 1 0 00111111222222222234445555555554443
Q ss_pred HHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHH----HhhcCCCchH
Q 011737 195 MSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQ----DTLKSSPPEQ 270 (478)
Q Consensus 195 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~----~~m~~p~~~~ 270 (478)
..+...++.....+.+ .+ . ......+ .......+...+++..++||.+|+++|++. +|.+||...+
T Consensus 154 ~~ii~l~~l~~~lip~-~~--~--~~L~~~p-----~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~ 223 (397)
T TIGR00814 154 PLVLILVLLSLYLIPH-WN--G--ANLTTFP-----SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAE 223 (397)
T ss_pred HHHHHHHHHHHHHHHH-cC--H--HHHhcCC-----cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHH
Confidence 3332211122211211 11 0 0011000 001122467899999999999999999998 3344332236
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccc-----ccc--ccccc-cCCchhHHHHHHHHHHHHHHHhhhhcccch
Q 011737 271 EVMKKANTIATFTATTLYLMCGCLGYAALGNHAQ-----GNI--LTGFG-FYEPFWLIDLANFFIVVHLLGAYQVLAQPV 342 (478)
Q Consensus 271 ~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~-----~~i--l~~~~-~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 342 (478)
+|.+|++..+..+.+++|+..-+.+....+++.- .|+ +..+. ..+..+...+..++..+++.+||--...-.
T Consensus 224 ~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~ 303 (397)
T TIGR00814 224 RKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGA 303 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8899999999999999999888887777765531 121 22111 012345556677777888888888888888
Q ss_pred HHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHhhhh
Q 011737 343 FGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFP 422 (478)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~~~~l~fi~P 422 (478)
+|.+.+.+.+..+.+ ++ + .+.+..+.....++++.++..+...|++-.+++-+|+...+.+.|++|
T Consensus 304 ~e~l~~l~~~~~~~~---~~----~-------~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p 369 (397)
T TIGR00814 304 REGLNGIVLNSLKMK---GK----K-------INIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMP 369 (397)
T ss_pred HHHHHHHHHHHhccc---cc----c-------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHH
Confidence 899888773211110 00 0 012244556667788899999999999999999888888899999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHH
Q 011737 423 MEMYIVRKEIKRGTICWFGLHLVNLVC 449 (478)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~~~~~~g 449 (478)
.+.-+|...-++.+.++ .++++.+.|
T Consensus 370 ~~~~~~v~~l~~~~~~~-~~~fv~~~g 395 (397)
T TIGR00814 370 MYAIYKVPALKKYRGRI-SNVFVTVIG 395 (397)
T ss_pred HHHHHccHHHHHhCCCc-chheeEeee
Confidence 99998876555443322 345444444
No 16
>PRK15049 L-asparagine permease; Provisional
Probab=99.71 E-value=2.8e-14 Score=148.24 Aligned_cols=379 Identities=13% Similarity=0.077 Sum_probs=201.7
Q ss_pred CCCCCCCCCCCcccccHHHHHHHHHhhhhhhhHhhhHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccc
Q 011737 20 ANGEVDDDGRSRRTGTVWTASAHIITAIVGSGVLSLAW-GLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKR 97 (478)
Q Consensus 20 ~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~ 97 (478)
++...+++++.+|+.+.++..+..++.+||+|++..|. +++.+|- .+++..++.+++....+..+.|.. ..++.|
T Consensus 16 ~~~~~~~~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG-- 92 (499)
T PRK15049 16 RRWLNAHEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG-- 92 (499)
T ss_pred cccccCCchhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--
Confidence 33344444456888999999999999999999998776 5667775 466777888888888888888853 333323
Q ss_pred cccHHHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhH-HHHHHHh
Q 011737 98 NYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMAL-GIVEILL 176 (478)
Q Consensus 98 ~~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~pl 176 (478)
+..+.+++.+||+.++++.+..++.....+..-....+.++... +. + + +...|.... ..++.-+
T Consensus 93 --g~y~y~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~--~---~-------~~~~~~~~~~~~~l~~~ 157 (499)
T PRK15049 93 --SFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GA--F---G-------GVPQWVFALAALTIVGT 157 (499)
T ss_pred --CHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--C---C-------CCcHHHHHHHHHHHHHH
Confidence 66777999999999999999988776544443333344333221 10 0 0 012222211 1112222
Q ss_pred hCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccc-c-ccCcchhhhhhHHHHHhHHHHHHhhcch
Q 011737 177 SQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVE-I-GLDLTAADKTWRIFQAIGNMAFACSYAA 254 (478)
Q Consensus 177 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~faf~~~~ 254 (478)
.-.+..+....+.....+..+...+..++..+......++.+....+.. + ++....+.....+..++....|+|.|.+
T Consensus 158 iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e 237 (499)
T PRK15049 158 MNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIE 237 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHH
Confidence 2233344444444333322222111111111111111111110000000 0 0000111223345666778999999999
Q ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccc----cccccccccCCchhHHHHHHHHHHHH
Q 011737 255 ILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQ----GNILTGFGFYEPFWLIDLANFFIVVH 330 (478)
Q Consensus 255 ~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~ 330 (478)
.+...-+|+||| +|+.+|++..++..+.++|+..........+.+.. +....-+......+...+.++.+.+.
T Consensus 238 ~i~~~aeE~knP---~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia 314 (499)
T PRK15049 238 MVGTAAGECKDP---QTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTA 314 (499)
T ss_pred HHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 999999999999 47899999999999999998765544433332111 11111111011233445556666666
Q ss_pred HHHhhhhcccchHHHHHHHhhc-cCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccc--hHHHHH
Q 011737 331 LLGAYQVLAQPVFGVVESWAGN-RWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPF--FNEVLA 407 (478)
Q Consensus 331 ~~~s~pl~~~p~~~~l~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~--~~~vi~ 407 (478)
.+.+..-..+...+.+...-.+ ..| ++..+.+..+.| ...+....++.++..++....|+ ++.+++
T Consensus 315 ~~ss~ns~~~~~sR~l~a~Ardg~lP--~~f~kv~k~~~P---------~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~ 383 (499)
T PRK15049 315 ALSSLNSGLYCTGRILRSMAMGGSAP--SFMAKMSRQHVP---------YAGILATLVVYVVGVFLNYLVPSRVFEIVLN 383 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcC--HHHHHhCCCCCC---------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6555544333333333333221 112 111221122334 33344444433333333333332 555666
Q ss_pred HHhhhhhhhHHhhhhHHHHHHHhcC
Q 011737 408 FLGAIAYWPMTVYFPMEMYIVRKEI 432 (478)
Q Consensus 408 l~Ga~~~~~l~fi~P~l~~~~~~~~ 432 (478)
+.+ .+..+.|++|.+.+++.|++
T Consensus 384 ~~~--~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 384 FAS--LGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHh
Confidence 555 34578899998888887653
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.70 E-value=3.9e-14 Score=145.47 Aligned_cols=240 Identities=13% Similarity=-0.015 Sum_probs=150.3
Q ss_pred CcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHHHh
Q 011737 30 SRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVKNY 108 (478)
Q Consensus 30 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~~~ 108 (478)
++|+.+.++++...+++++|+|++.+|..+++.|- .+++.+++.+++.........|.. +.+++| ...+.+++.
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G----G~y~y~~~~ 78 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG----GMGGYAEYA 78 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----chHHHHHHH
Confidence 46789999999999999999999999999888885 467777888888887777777753 222222 445568899
Q ss_pred ccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHH-HHHHHhhCCCCCCcchH
Q 011737 109 LGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALG-IVEILLSQIPNFHKLSW 187 (478)
Q Consensus 109 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~pl~~~~~l~~l~~ 187 (478)
+||+.++++.+..++.......++.....+++..+++. . ......+.+... +++.-..-.+..+....
T Consensus 79 ~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~-----~------~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~ 147 (438)
T PRK10655 79 FGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA-----T------LSPVQICLATIGVLWLCTVANFGGARITGQ 147 (438)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----c------cchHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999999999888777666666555555666554321 0 000111111111 11111222333444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCC
Q 011737 188 LSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSP 267 (478)
Q Consensus 188 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 267 (478)
+..+.+...+...+++....... .+.+... + .|.+ .......++..++....|+|.|.+....+-+|+|||
T Consensus 148 i~~i~~~~~l~~l~~~~i~~~~~-~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P- 218 (438)
T PRK10655 148 ISSVTVWGVIIPVVGLSIIGWFW-FSPSLYV---A--AWNP--HHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENP- 218 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCccccc---C--CcCc--cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCc-
Confidence 44443333332222222221221 1111110 1 1111 111112356677888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011737 268 PEQEVMKKANTIATFTATTLYLMCGCLGY 296 (478)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~lY~~~g~~gy 296 (478)
+|+.+|++..+..++.++|++......
T Consensus 219 --~r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 219 --ERNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred --cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999998665443
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=99.70 E-value=5.4e-14 Score=144.87 Aligned_cols=366 Identities=14% Similarity=0.077 Sum_probs=198.8
Q ss_pred CCcccccHHHHHHHHHhhhhhhhHhhhHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHH
Q 011737 29 RSRRTGTVWTASAHIITAIVGSGVLSLAWG-LAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVK 106 (478)
Q Consensus 29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~ 106 (478)
+.+|+.+.++..+..++.++|+|++..|-. .+++|- ..++..++.+++....+..+.|.. +.++.| +..+.++
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G----g~~~y~~ 92 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG----SFAHFAY 92 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHH
Confidence 467888999999999999999999987765 445674 466777888888888888888853 333323 6677899
Q ss_pred HhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHh-HHHHHHHhhCCCCCCcc
Q 011737 107 NYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMA-LGIVEILLSQIPNFHKL 185 (478)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~pl~~~~~l~~l 185 (478)
+.+|+..++++.+..++.......+.....+.+++.+.+ .. ..+... ....++-+.-.+..+..
T Consensus 93 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~-------------~~--~~~~~~~~~~~l~~~lN~~gv~~~ 157 (458)
T PRK10249 93 KYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFP-------------DV--PTWIWAAAFFIIINAVNLVNVRLY 157 (458)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------cC--cHHHHHHHHHHHHHHHHHhcchhh
Confidence 999999999999998887766555555555555554321 00 112211 11112222223444444
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhccCC-CcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhc
Q 011737 186 SWLSTIAASMSFSYAGIGMGLSFAKIVSGHG-EKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLK 264 (478)
Q Consensus 186 ~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 264 (478)
+.+.....+..+...++.+...+......++ .+...... |......+..+.++..++....|+|.|.+.+....+|+|
T Consensus 158 ~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 158 GETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNL-WRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhc-cCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 4444333322221111111111111111111 00001100 100000112233567899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccc----cccccccccCCchhHHHHHHHHHHHHHHHhhhhccc
Q 011737 265 SSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQ----GNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQ 340 (478)
Q Consensus 265 ~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~ 340 (478)
|| +|+.+|++..++....++|+..........+++.. +....-+.....++...+.+++.++..+.+..-...
T Consensus 237 ~P---~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 313 (458)
T PRK10249 237 DP---EKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVY 313 (458)
T ss_pred CH---hhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 58999999999999999998754443333322211 111111100112334444555555555554433322
Q ss_pred chHHHHHHHhhc-cCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHhhhhhhhH
Q 011737 341 PVFGVVESWAGN-RWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFP--FFNEVLAFLGAIAYWPM 417 (478)
Q Consensus 341 p~~~~l~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p--~~~~vi~l~Ga~~~~~l 417 (478)
...+.+...-.+ ..| ++..+.+..+.| ...+.+...+..+..++....| .++.++++.+. ...+
T Consensus 314 ~~sR~l~a~ardg~lP--~~~~kv~~~~~P---------~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~--~~~i 380 (458)
T PRK10249 314 SNSRMLFGLSVQGNAP--KFLTRVSRRGVP---------INSLMLSGAITSLVVLINYLLPQKAFGLLMALVVA--TLLL 380 (458)
T ss_pred HHHHHHHHHhcCCCcC--HHHHHhCCCCCC---------HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH--HHHH
Confidence 222333332211 112 111111111233 3344444444433333433333 24455554432 3578
Q ss_pred HhhhhHHHHHHHhc
Q 011737 418 TVYFPMEMYIVRKE 431 (478)
Q Consensus 418 ~fi~P~l~~~~~~~ 431 (478)
.|++|++.+++.++
T Consensus 381 ~y~~~~~~~l~~r~ 394 (458)
T PRK10249 381 NWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988774
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.68 E-value=1.4e-13 Score=141.07 Aligned_cols=243 Identities=13% Similarity=0.032 Sum_probs=149.9
Q ss_pred CCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHHH
Q 011737 29 RSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVKN 107 (478)
Q Consensus 29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~~ 107 (478)
+++|+.+.++.+...+++++|+|++.+|...++.|-. .+..+++.++..........|.. +.++.| ...+.+++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G----G~y~y~~~ 76 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG----GPIAYAGE 76 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----ChhHHHHH
Confidence 4678899999999999999999999999999988853 56666777777776677777742 333322 44455778
Q ss_pred hccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhH-hHHHHHHHhhCCCCCCcch
Q 011737 108 YLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM-ALGIVEILLSQIPNFHKLS 186 (478)
Q Consensus 108 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~pl~~~~~l~~l~ 186 (478)
+||..++.+.+..+........++.+...+++..+.+. .+. . ...... +..+.+.-+.-.+..+...
T Consensus 77 -~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~-----~~~----~--~~~~~~~~~i~~~~~~ln~~gvk~~~ 144 (435)
T PRK10435 77 -ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPV-----LND----P--IPAGIACIAIVWVFTFVNMLGGTWVS 144 (435)
T ss_pred -HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----cCC----h--HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 89999999998877655555555555566666655321 100 0 011111 1111112222334444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCC
Q 011737 187 WLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSS 266 (478)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 266 (478)
.++.+..+..+.. ++...+......++... ..+|.+ +...+..++..++....|+|.|.+.+....+|+|||
T Consensus 145 ~i~~i~~~~~li~---~~~~~i~g~~~~~~~~~---~~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP 216 (435)
T PRK10435 145 RLTTIGLVLVLIP---VVGTAIVGWHWFDAATY---AANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP 216 (435)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHcCHHhh---cccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc
Confidence 4444444332221 11111111111011000 011110 111234577889999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 011737 267 PPEQEVMKKANTIATFTATTLYLMCGCLGYAAL 299 (478)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~f 299 (478)
+|+.+|++..+...+.++|++..+......
T Consensus 217 ---~r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 217 ---KRTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred ---cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 479999999999999999998777554444
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.68 E-value=2.4e-13 Score=139.85 Aligned_cols=241 Identities=11% Similarity=0.006 Sum_probs=146.4
Q ss_pred CCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHHH
Q 011737 29 RSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVKN 107 (478)
Q Consensus 29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~~ 107 (478)
+++|+.+.++++...+++++|+|++.+|....+.|. ..+..+++.++........+.|.. ..++.| ...+.+++
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aG----G~y~~~~~ 79 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPG----GSYAYARR 79 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----ChhHHHHH
Confidence 467889999999999999999999999999888774 345556666666666666666742 333322 44444999
Q ss_pred hccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchh-HhHHHH--HHHhhCCCCCCc
Q 011737 108 YLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYM-MALGIV--EILLSQIPNFHK 184 (478)
Q Consensus 108 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~--~~pl~~~~~l~~ 184 (478)
.+||...+++.+..++.......+......++...+.+. . ...+.. ++..++ ++-..-.+..|.
T Consensus 80 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~ln~~gvk~ 146 (445)
T PRK10644 80 CFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----L--------KDPLVLTITCVVVLWIFVLLNIVGPKM 146 (445)
T ss_pred HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c--------CCcHHHHHHHHHHHHHHHHHHHhchHH
Confidence 999999999998888766555555554455555443221 0 011111 111111 122222334444
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhc
Q 011737 185 LSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLK 264 (478)
Q Consensus 185 l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 264 (478)
..++..+.....+...++.....+.. .+.+... . .|. .........+..++....|+|.|.+....+-+|+|
T Consensus 147 ~~~i~~i~~~~~~i~l~~~~~~~~~~-~~~~~~~---~--~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k 218 (445)
T PRK10644 147 ITRVQAVATVLALIPIVGIAVFGWFW-FRGETYM---A--AWN--VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK 218 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcc---C--Ccc--ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 44554444433332111111111111 1111000 0 011 01111223556778889999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 011737 265 SSPPEQEVMKKANTIATFTATTLYLMCGCLGYAA 298 (478)
Q Consensus 265 ~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~ 298 (478)
|| +|+.+|++..+..++.++|.+..+.....
T Consensus 219 ~P---~r~iPrai~~s~~i~~v~Y~l~~~~~~~~ 249 (445)
T PRK10644 219 NP---KRNVPIATIGGVLIAAVCYVLSSTAIMGM 249 (445)
T ss_pred Cc---ccchhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99 47999999999999999999877754333
No 21
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.66 E-value=1.8e-13 Score=140.87 Aligned_cols=368 Identities=11% Similarity=0.046 Sum_probs=199.8
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhhhHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLSLAWGLA-QLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAV 105 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~-~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~ 105 (478)
++.+|+.+.++..+..+++++|+|++..|.... ++|- ..++..++.+++.+.....+.|.. +.+.. .++.+.+
T Consensus 8 ~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~a----Gg~y~~~ 82 (456)
T PRK10238 8 EQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVA----GSFSHFA 82 (456)
T ss_pred hhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHH
Confidence 357899999999999999999999998777655 5664 456677778888888788887753 33332 3677778
Q ss_pred HHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhH-hHHHHHHHhhCCCCCCc
Q 011737 106 KNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM-ALGIVEILLSQIPNFHK 184 (478)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~pl~~~~~l~~ 184 (478)
++.+||...+++++..++.....+.......+++++...+. . ..|.. +....+.-..-....+.
T Consensus 83 ~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~--~~~~~~~i~~~~~~~lN~~gv~~ 147 (456)
T PRK10238 83 YKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------I--PTWVSAAVFFVVINAINLTNVKV 147 (456)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C--cHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999998888887777777777544210 0 11111 11111111112233344
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhccCCC-cccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhh
Q 011737 185 LSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGE-KTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTL 263 (478)
Q Consensus 185 l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 263 (478)
...+.....+..+...++++...+......++. +..... .|......+....++..+++...|+|.|-+......+|+
T Consensus 148 ~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~ 226 (456)
T PRK10238 148 FGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSN-LWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA 226 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccc-cCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 444444443333322211111111111111100 000000 000000011122356677888999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHhhhhhh--hhcccCcc--ccccccccccCCchhHHHHHHHHHHHHHHHhhhhcc
Q 011737 264 KSSPPEQEVMKKANTIATFTATTLYLMCGCLG--YAALGNHA--QGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLA 339 (478)
Q Consensus 264 ~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~g--y~~fg~~~--~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 339 (478)
||| +|+.+|++..++....++|+..-..- ...+.+-. .+....-+......+...+.++.+.+..+.+..-..
T Consensus 227 knP---~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~ 303 (456)
T PRK10238 227 DNP---EQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCV 303 (456)
T ss_pred cCh---hhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 57999999988888888887543221 11111110 111111111011233445555555555555544433
Q ss_pred cchHHHHHHHhhc-cCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHhhhhhhh
Q 011737 340 QPVFGVVESWAGN-RWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFP--FFNEVLAFLGAIAYWP 416 (478)
Q Consensus 340 ~p~~~~l~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p--~~~~vi~l~Ga~~~~~ 416 (478)
+...+.+...-.+ ..| ++..+.+..+.| ...+.+...+..+..++....| .++.++++.+ .+..
T Consensus 304 ~~~sR~l~a~ardg~lP--~~f~kv~~~~~P---------~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~ 370 (456)
T PRK10238 304 YCNSRMLFGLAQQGNAP--KALASVDKRGVP---------VNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALV 370 (456)
T ss_pred HHHHHHHHHHHhCCCcc--HHHHhhCcCCCc---------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHH
Confidence 3333343333221 112 111111111233 3333333333333333322333 2555666544 3456
Q ss_pred HHhhhhHHHHHHHhcC
Q 011737 417 MTVYFPMEMYIVRKEI 432 (478)
Q Consensus 417 l~fi~P~l~~~~~~~~ 432 (478)
+.|++|.+.+++.+|+
T Consensus 371 i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 371 INWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999987753
No 22
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.64 E-value=1.6e-12 Score=134.22 Aligned_cols=244 Identities=10% Similarity=0.021 Sum_probs=147.7
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhhhHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLSLAWG-LAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAV 105 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~ 105 (478)
++.+|+.+.++.++..+++++|+|++.+|.. .+.+|- ..++.+++.+++.......+.|.. +.+++| ...+.+
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G----g~y~y~ 79 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS----SFSRYA 79 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHH
Confidence 4567889999999999999999999998776 455674 467777888888888888888853 333322 555678
Q ss_pred HHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcc
Q 011737 106 KNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKL 185 (478)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l 185 (478)
++.+||..++++.+..++.....+.......+.+++.+.+ . .....+.+.. .++.-..-.+..+..
T Consensus 80 ~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~-~~l~~~ln~~gv~~~ 145 (457)
T PRK10580 80 QENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP-----T--------VPHWIWVLSV-VLIICAVNLMSVKVF 145 (457)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----C--------CChHHHHHHH-HHHHHHHHHccchhH
Confidence 9999999999999988877665555544555555543321 0 1111121111 122222233444555
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh--hh-hhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHh
Q 011737 186 SWLSTIAASMSFSYAGIGMGLS--FA-KIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDT 262 (478)
Q Consensus 186 ~~~s~~~~~~~~~~~~i~~~~~--i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 262 (478)
..+.....+..+...++.+... +. ....+........+ .|..+...+....++..++....|+|.|.+......+|
T Consensus 146 ~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E 224 (457)
T PRK10580 146 GELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHN-LWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE 224 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccc-cCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 5554433333222111111111 11 11111100000000 01100011122336778899999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011737 263 LKSSPPEQEVMKKANTIATFTATTLYLMCGCL 294 (478)
Q Consensus 263 m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~ 294 (478)
+||| +|+.+|++..+...+.++|+.....
T Consensus 225 ~knP---~k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 225 AKDP---EKSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred hcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 4789999998888888888866443
No 23
>PRK10836 lysine transporter; Provisional
Probab=99.64 E-value=1.4e-12 Score=135.66 Aligned_cols=253 Identities=10% Similarity=0.004 Sum_probs=143.8
Q ss_pred CCCCCCCCcccccHHHHHHHHHhhhhhhhHhhhHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCcccccc
Q 011737 23 EVDDDGRSRRTGTVWTASAHIITAIVGSGVLSLAW-GLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYT 100 (478)
Q Consensus 23 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~s 100 (478)
...|+++.+|+.+.++.+...++++||+|++.+|. +.+++|-...++..++++++....+..+.|.. +.++.| .
T Consensus 6 ~~~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG----g 81 (489)
T PRK10836 6 KTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG----S 81 (489)
T ss_pred ccCCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----C
Confidence 33445667889999999999999999999999886 56677854457788888888888888888853 333333 5
Q ss_pred HHHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCC
Q 011737 101 YRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIP 180 (478)
Q Consensus 101 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~ 180 (478)
..+.+++.+|+..++++.+..++........-.......+..+ .+. .+...+..+..+ ++-..-..
T Consensus 82 ~y~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~-----~~~--------~~~~~~~~~~~~-~~~~lN~~ 147 (489)
T PRK10836 82 FATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWW-----FPD--------TPGWIWSALFLG-VIFLLNYI 147 (489)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCC--------CchHHHHHHHHH-HHHHHHHH
Confidence 6666889999999899988877654333322222222222211 110 001111111111 11122223
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHh--hhhhhhhccCCCccccccccccc-CcchhhhhhHHHHHhHHHHHHhhcchhHH
Q 011737 181 NFHKLSWLSTIAASMSFSYAGIGMG--LSFAKIVSGHGEKTTLTGVEIGL-DLTAADKTWRIFQAIGNMAFACSYAAILI 257 (478)
Q Consensus 181 ~l~~l~~~s~~~~~~~~~~~~i~~~--~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~ 257 (478)
..+..+.+.....+..+...+..+. .........++.+.... +|.+ ..+.......+..+.....|+|.|.+.+.
T Consensus 148 gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~ 225 (489)
T PRK10836 148 SVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWS--NWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIG 225 (489)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccc--cCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHH
Confidence 3333333322222222211111111 11111111111000000 1110 00111122344555666779999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 011737 258 EIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAA 298 (478)
Q Consensus 258 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~ 298 (478)
..-+|+||| +|+.+|++..++..+.++|++....-...
T Consensus 226 ~~a~E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 226 IAAGESEDP---AKNIPRAVRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 999999999 58999999999999999999776544333
No 24
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.64 E-value=9.4e-13 Score=136.38 Aligned_cols=249 Identities=12% Similarity=0.035 Sum_probs=153.2
Q ss_pred CcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHHHHhh-cCCc-CccccccHHHHHH
Q 011737 30 SRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLG-WIIGIATLVIFSGISLYTSGLLAECY-RAPN-SVKRNYTYRDAVK 106 (478)
Q Consensus 30 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G-~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~-~~~~~~sy~~l~~ 106 (478)
.+|+.|.++++...+++++|+|++.+|....+.| -...++..++.+++.........|.. +.++ .| ...+.++
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG----G~y~y~~ 80 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG----GIYAYAR 80 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHH
Confidence 4678999999999999999999999999987644 22234556667777777777777743 3333 22 4455689
Q ss_pred HhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhH-hHHHHHHHhhCCCCCCcc
Q 011737 107 NYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM-ALGIVEILLSQIPNFHKL 185 (478)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~pl~~~~~l~~l 185 (478)
+.+||+.+++..+..++.......++.....+++..+++.+ +. ..+...+.. +...++.-..-.+..+..
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-----~~----~~~~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 81 EGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF-----GS----GNPVPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred hHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cC----CCcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999998887766666777666666666654421 00 000111111 111112222334555555
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcC
Q 011737 186 SWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKS 265 (478)
Q Consensus 186 ~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 265 (478)
.++..+.....+...++.+...+.. .+.+....+..+.. .+........+..++....|+|.|.+....+.+|+||
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 227 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHD---VPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccC---CCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 5555555544333222222222221 11111000000000 0001112335677888999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 011737 266 SPPEQEVMKKANTIATFTATTLYLMCGCLGYAAL 299 (478)
Q Consensus 266 p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~f 299 (478)
+ |+.+|++..+..++.++|++.........
T Consensus 228 ~----r~iPrai~~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 228 K----SDVGKATVLGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred c----ccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4 89999999999999999998776544433
No 25
>PRK10746 putative transport protein YifK; Provisional
Probab=99.63 E-value=1.2e-12 Score=134.86 Aligned_cols=369 Identities=8% Similarity=0.005 Sum_probs=202.2
Q ss_pred CCcccccHHHHHHHHHhhhhhhhHhhhHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHH
Q 011737 29 RSRRTGTVWTASAHIITAIVGSGVLSLAWG-LAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVK 106 (478)
Q Consensus 29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~ 106 (478)
+.+|+.+.++..+..++++||+|++..|.. .+.+|- ..++..++.+++.+..+..+.|.. ..++. .++.+.++
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~s----Gg~~~y~~ 81 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVT----GSFAVYAH 81 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHH
Confidence 467889999999999999999999986555 556775 456677778888888888888853 33332 37788899
Q ss_pred HhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcch
Q 011737 107 NYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLS 186 (478)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~ 186 (478)
+.+||+.++.+.+..++.....+.......+.+++.+.+ ..+...+..+..+ ++-+.-.+..+..+
T Consensus 82 ~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p-------------~~~~~~~~~~~~~-~~~~lN~~gv~~~~ 147 (461)
T PRK10746 82 RYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP-------------EMAQWIPALIAVA-LVALANLAAVRLYG 147 (461)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-------------CCchHHHHHHHHH-HHHHHHHHhHHHHH
Confidence 999999999999999988777777766666766654421 1111111111111 11112223333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh--h-hhhccCCCcccccccccccCc-chhhhhhHHHHHhHHHHHHhhcchhHHHHHHh
Q 011737 187 WLSTIAASMSFSYAGIGMGLSF--A-KIVSGHGEKTTLTGVEIGLDL-TAADKTWRIFQAIGNMAFACSYAAILIEIQDT 262 (478)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~i--~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 262 (478)
.+........+......+...+ . ....+++...... +|.++. ..+..+.++..++....|+|.|.+.+....+|
T Consensus 148 ~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E 225 (461)
T PRK10746 148 EIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFS--NLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGE 225 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc--cccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3332222222111111111111 1 1111110000011 111000 11122346778999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccc----ccccccccCCchhHHHHHHHHHHHHHHHhhhhc
Q 011737 263 LKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQG----NILTGFGFYEPFWLIDLANFFIVVHLLGAYQVL 338 (478)
Q Consensus 263 m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 338 (478)
+||| +|+.+|++..++..+.++|+...+......+.+..+ .....+..........+.++.+.++.+.+..-.
T Consensus 226 ~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~ 302 (461)
T PRK10746 226 AKNP---QVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSG 302 (461)
T ss_pred hcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999 589999999999888999987544433333322111 111111000122233455666666666555444
Q ss_pred ccchHHHHHHHhhc-cCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhh--h
Q 011737 339 AQPVFGVVESWAGN-RWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAY--W 415 (478)
Q Consensus 339 ~~p~~~~l~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~~--~ 415 (478)
++...+.+...-.+ ..|+ +..+.+..+.| ...+.......++........|+-+.+++.+-++++ .
T Consensus 303 ~~~~sR~l~~~a~~g~lP~--~~~~~~~~g~P---------~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~ 371 (461)
T PRK10746 303 MYSCGRMLYALAKNRQLPA--AMAKVSRHGVP---------VAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPG 371 (461)
T ss_pred HHHHHHHHHHHHhCCCcCH--HHHHhCCCCCc---------HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 33333343333221 1121 11111111233 233333333333334444455665555555443332 4
Q ss_pred hHHhhhhHHHHHHHhcC
Q 011737 416 PMTVYFPMEMYIVRKEI 432 (478)
Q Consensus 416 ~l~fi~P~l~~~~~~~~ 432 (478)
.+.++++++.++|.+++
T Consensus 372 ~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 372 MVPWFVILISQLRFRRA 388 (461)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78888888888887754
No 26
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.63 E-value=1.3e-12 Score=135.35 Aligned_cols=249 Identities=12% Similarity=0.038 Sum_probs=146.8
Q ss_pred CCcccccHHHHHHHHHhhhhhhhHhhhHHHH-HhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHH
Q 011737 29 RSRRTGTVWTASAHIITAIVGSGVLSLAWGL-AQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVK 106 (478)
Q Consensus 29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af-~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~ 106 (478)
+.+|+.+.++.+...++.++|+|++..|... +.+|-...++..++.+++.......+.|.. +.++.| .+.+.++
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG----G~y~y~~ 86 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG----AFHVYAA 86 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHH
Confidence 4678899999999999999999999877664 567743346667778888888888887753 333323 5667799
Q ss_pred HhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcch
Q 011737 107 NYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLS 186 (478)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~ 186 (478)
+.+|+..++.+.+..++.....+.......+..++.+. + ......+.++..+ ++-+.-.+..+...
T Consensus 87 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-----p--------~~~~~~~~~~~~~-~~~~in~~gvk~~~ 152 (471)
T PRK11387 87 RYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWF-----P--------QVPVWPWCLLFCA-LIFGLNVVSTRFFA 152 (471)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C--------cCcHHHHHHHHHH-HHHHHHHHhHHHHH
Confidence 99999999999998887766655444444443333221 1 0001111111111 22222233344444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh---hc-cCCCc-ccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHH
Q 011737 187 WLSTIAASMSFSYAGIGMGLSFAKI---VS-GHGEK-TTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQD 261 (478)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~i~~~---~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 261 (478)
.+........+...+..+...+... .. +++.. ......+ .+++. +....++..++....|+|.|.+.+...-+
T Consensus 153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~g~~~~~~~~~~~~faf~G~e~~~~~a~ 230 (471)
T PRK11387 153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLT-AEGWF-PHGGLPILMTMVAVNFAFSGTELIGIAAG 230 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccC-CCCCC-cccHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 3333322222221111111111111 00 00000 0000000 00111 12234567788889999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 011737 262 TLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALG 300 (478)
Q Consensus 262 ~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg 300 (478)
|+||| +|+.+|++..++..+.++|+...+..-...+
T Consensus 231 E~knP---~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 231 ETENP---AKVIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99999 5899999999999999999987664433333
No 27
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.63 E-value=1.4e-12 Score=134.46 Aligned_cols=247 Identities=11% Similarity=0.053 Sum_probs=155.3
Q ss_pred CCcccccHHHHHHHHHhhhhhhhHhhhH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHH
Q 011737 29 RSRRTGTVWTASAHIITAIVGSGVLSLA-WGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKN 107 (478)
Q Consensus 29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP-~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~ 107 (478)
+.+|+.+.++..+..+++++|+|++.+| .+++.+|- .+++..++.+++.......+.|.... .|. ..+..+.+++
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~-~P~--~Gg~~~~~~~ 84 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVA-NPD--TGSFSTYADD 84 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCHHHHHHH
Confidence 4688899999999999999999999999 66778885 46777788888888888888885332 222 1266778999
Q ss_pred hccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhH-HHHHHHhhCCCCCCcch
Q 011737 108 YLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMAL-GIVEILLSQIPNFHKLS 186 (478)
Q Consensus 108 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~pl~~~~~l~~l~ 186 (478)
.+||+..+++.+..++.....+.......+.+++.+.+. ...+.... ..++.-+.-.+..+...
T Consensus 85 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~n~~gv~~~~ 149 (452)
T TIGR01773 85 AIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD---------------IPLWLFSLILTIVLTLTNLYSVKSYG 149 (452)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------------CcHHHHHHHHHHHHHHHHHHhcchhh
Confidence 999999999999998888777777767777666654211 01222211 11112222233445555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCC-c-ccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhc
Q 011737 187 WLSTIAASMSFSYAGIGMGLSFAKIVSGHGE-K-TTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLK 264 (478)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 264 (478)
.+.....+..+...+..+...+.......+. + ....+.. ......+....++..++....|+|.|.+....+.+|+|
T Consensus 150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k 228 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLT-GKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESS 228 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccc-CCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhc
Confidence 5544444333322111111111111111110 0 0000000 00000112233678899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 011737 265 SSPPEQEVMKKANTIATFTATTLYLMCGCLGYAA 298 (478)
Q Consensus 265 ~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~ 298 (478)
|| +|+.+|++..+.....++|++........
T Consensus 229 ~P---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 229 NP---IKSITRATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred Ch---hhHHHHHHHHHHHHHHHHHHHHHHHHeeE
Confidence 99 47999999988888999999765544333
No 28
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.62 E-value=1e-12 Score=137.97 Aligned_cols=375 Identities=11% Similarity=0.016 Sum_probs=207.2
Q ss_pred CCCCcccccHHHHHHHHHhhhhhhhHhhhHHHH--HhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHH
Q 011737 27 DGRSRRTGTVWTASAHIITAIVGSGVLSLAWGL--AQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRD 103 (478)
Q Consensus 27 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af--~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~ 103 (478)
+++.+|+.+.++.+...+++++|+|++.+|-.. ..+|-. .++.+++.++.+........|.. +.++.| ..+.|
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG-g~Y~y-- 98 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG-SAYLY-- 98 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cceee--
Confidence 345689999999999999999999999998653 347743 45566667777777777777742 333333 13455
Q ss_pred HHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhcc----ccCCCCCCccccC-CchhHhHHHHHHHhhC
Q 011737 104 AVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCY----HKEGHKAPCKYSY-NPYMMALGIVEILLSQ 178 (478)
Q Consensus 104 l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~----~~~~~~~~~~~~~-~~~~~l~~~~~~pl~~ 178 (478)
+++.+|+...+++.+..++.....+.+.....++++..++..... +..+...+ .... .....+..++++-+..
T Consensus 99 -~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln 176 (557)
T TIGR00906 99 -SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLL 176 (557)
T ss_pred -HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHH
Confidence 778899999999999999888777777777777777776542100 00000000 0111 1111122222222334
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHH
Q 011737 179 IPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIE 258 (478)
Q Consensus 179 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 258 (478)
.+..+..++++.+.+...+....++++..+.+. +.+.+..... . +.+...+....+++.++....|+|.|.+.+.+
T Consensus 177 ~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~-~~~~~~~~~~-~--~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~ 252 (557)
T TIGR00906 177 SFGVKESAWVNKIFTAINILVLLFVIIAGFTKA-DVANWSITEE-K--GAGGFMPYGFTGVLSGAATCFFAFIGFDAIAT 252 (557)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhC-Cchhcccccc-c--cCCCCCCcchHHHHHHHHHHHHHHhhHHHHHH
Confidence 566677777766666555443222222222221 1111110000 0 00001112234678889999999999999999
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCc---cccccccccccCCchhHHHHHHHHHHHHHHHhh
Q 011737 259 IQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNH---AQGNILTGFGFYEPFWLIDLANFFIVVHLLGAY 335 (478)
Q Consensus 259 i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~---~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 335 (478)
.-+|.||| +|+.+|++..++.+++++|.++.+.-....+.+ .++.+...+.....++...+..++..+.++.+.
T Consensus 253 ~aeE~knP---~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl 329 (557)
T TIGR00906 253 TGEEVKNP---QRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSL 329 (557)
T ss_pred hHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999 478999999999999999997765433222211 111111111111234555555566665555554
Q ss_pred hhcccchHHHHHHHhhcc-CCCCccCCcccc-cccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhh
Q 011737 336 QVLAQPVFGVVESWAGNR-WPKSKFINDEHH-LGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIA 413 (478)
Q Consensus 336 pl~~~p~~~~l~~~~~~~-~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~ 413 (478)
...+......+...-.+. .|+ +..+-++ .+.| ..... +..+++.+++.. .+++.+.++.. .
T Consensus 330 ~~~~~~~sRil~amarDGlLP~--~fakv~~r~~tP---------~~Ail---~~~iv~~il~~~-~~~~~l~~l~s--i 392 (557)
T TIGR00906 330 LGGMFPLPRVIYAMARDGLLFK--WLAQINSKTKTP---------INATV---VSGAIAALMAFL-FDLKALVDLLS--I 392 (557)
T ss_pred HHHHHHHHHHHHHHHcCCCccH--HHhccCCCCCCc---------HHHHH---HHHHHHHHHHHH-cCHHHHHHHHH--H
Confidence 444444333443332211 121 1111110 0122 11211 122222333333 35666666543 2
Q ss_pred hhhHHhhhhHHHHHHHhc
Q 011737 414 YWPMTVYFPMEMYIVRKE 431 (478)
Q Consensus 414 ~~~l~fi~P~l~~~~~~~ 431 (478)
+..+.|+++++..+.+|+
T Consensus 393 g~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 393 GTLLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 347889999777777664
No 29
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.62 E-value=1.7e-12 Score=134.22 Aligned_cols=247 Identities=10% Similarity=0.011 Sum_probs=149.6
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhhhHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLSLAW-GLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVK 106 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~ 106 (478)
++.+|+.+.++.....++++||+|++..|. +++++|. ..+..+++++++.......+.|.... .+ +..++.+.++
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~-~~--~~~~~~~ya~ 91 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS-NL--EYKSFSDFAS 91 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cC--CCCcHHHHHH
Confidence 347889999999999999999999998655 6778886 45667777787777777777775321 12 1236678899
Q ss_pred HhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcch
Q 011737 107 NYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLS 186 (478)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~ 186 (478)
+.+||...+++.+..++.......+.....+.+++.+.+. .. .+...+....++-+.-.+..+...
T Consensus 92 ~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~-~~~~~~~~~~~~~~iN~~g~~~~~ 157 (469)
T PRK11049 92 DLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------------LS-DWVASLAVVLLLLSLNLATVKMFG 157 (469)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------Cc-HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999998877655555555566555543211 01 111111111111122233344444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcc--CCCc--ccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHh
Q 011737 187 WLSTIAASMSFSYAGIGMGLSFAKIVSG--HGEK--TTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDT 262 (478)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 262 (478)
.+..+.+...+...+++++..+.....+ .+.. ....+. |......+..+.++..++....|+|.|.+.+...-+|
T Consensus 158 ~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHL-WNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccc-CCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 4444444333322222222222111110 0000 000000 0000000122335788999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011737 263 LKSSPPEQEVMKKANTIATFTATTLYLMCGCLGY 296 (478)
Q Consensus 263 m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy 296 (478)
+||| +|+.+|++..+...+.++|.+....-.
T Consensus 237 ~knP---~r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 237 TKDP---EKSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred hcCH---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 9999 579999998888888888886665443
No 30
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.61 E-value=4.6e-13 Score=131.12 Aligned_cols=368 Identities=14% Similarity=0.171 Sum_probs=239.4
Q ss_pred CCCCCcccccHHHHHHHHHhhhhhhhHh-hhHHHHHhhChHHHH-HHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHH
Q 011737 26 DDGRSRRTGTVWTASAHIITAIVGSGVL-SLAWGLAQLGWIIGI-ATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRD 103 (478)
Q Consensus 26 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~g~-~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~ 103 (478)
++++.+|+.+.++--+.-++..||+|.+ .-..+.+.+| +++ +..+++|.+.+.-++.|.|-..+ +|. ..|+.+
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~-~p~--~gSF~~ 81 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVA-NPV--SGSFSD 81 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC--CCcHHH
Confidence 4445678889999999999999999976 5888899999 554 55677888888889999996443 343 349999
Q ss_pred HHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHH--HH--HHHhhCC
Q 011737 104 AVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALG--IV--EILLSQI 179 (478)
Q Consensus 104 l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~--~~pl~~~ 179 (478)
.+++.+|++++++.++..++.....+++-+..++.+++..+++ . +.|+.... ++ ..=+...
T Consensus 82 ~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------v--P~Wv~al~~~~l~~~~NL~sV 146 (462)
T COG1113 82 YARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------V--PQWVFALAAVVLLLAVNLISV 146 (462)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------C--cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987542 1 23332221 11 1224446
Q ss_pred CCCCcch-HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHH
Q 011737 180 PNFHKLS-WLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIE 258 (478)
Q Consensus 180 ~~l~~l~-~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 258 (478)
|...++. |++.+-++.++.+.++.+...+. ...+++.....++.. +..-..+....+++.++-+.+|||.+.+.+-.
T Consensus 147 k~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~-g~~~~~~~~g~snl~-~hGGffP~G~~g~~~~~~~v~Faf~GiElvGi 224 (462)
T COG1113 147 KVFGELEFWFALIKVAAIIAFIVVGIVLLFG-GFGGGGGAAGFSNLW-DHGGFFPNGFLGFLSALQIVMFAFGGIELVGI 224 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCCccccccc-cCCCcCCCchHHHHHHHHHHHHHHhhHHHHHH
Confidence 6666666 45666666655444333333222 223222111122111 00011234456889999999999999999999
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhcccCccccccccccccCCchhHHHHHHHHHHHHHHH
Q 011737 259 IQDTLKSSPPEQEVMKKANTIATFTATTLYL-----MCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLG 333 (478)
Q Consensus 259 i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~-----~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 333 (478)
.-+|-||| +|..+|++.--..-..++|+ ++.+..|-.++++.++.++. +..-+-.+...+.|..+..+.+.
T Consensus 225 tA~Et~dP---~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~-f~~iGi~~Aa~i~N~VVLtAa~S 300 (462)
T COG1113 225 TAAEAKDP---EKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTV-FSLIGIPFAAGIMNFVVLTAALS 300 (462)
T ss_pred HHHhhcCh---hhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHH-HHHcCCcccccceeEEEeechhh
Confidence 99999999 47788887766666666665 66777777777766654432 21112334456667666666666
Q ss_pred hhhhcccchHHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHhh
Q 011737 334 AYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPF--FNEVLAFLGA 411 (478)
Q Consensus 334 s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~--~~~vi~l~Ga 411 (478)
+.---.+.....+...-.+. ...+..++-...+.| +..+..+.+...++.++.+..|. |..+.+..+.
T Consensus 301 ~~NSglystsRmL~~la~~g-~APk~~~klsk~gVP---------~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~ 370 (462)
T COG1113 301 ALNSGLYSTSRMLYSLAKQG-DAPKAFAKLSKRGVP---------VNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGL 370 (462)
T ss_pred cccccccccchHHHHHhhcC-cccHhHhhccccCCC---------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 66555555545555443221 111111111112333 66777888888888888889993 4555555544
Q ss_pred hhhhhHHhhhhHHHHHHHhc
Q 011737 412 IAYWPMTVYFPMEMYIVRKE 431 (478)
Q Consensus 412 ~~~~~l~fi~P~l~~~~~~~ 431 (478)
.. +..+.+=.+.++|.||
T Consensus 371 ~~--l~vW~~I~~s~l~~rk 388 (462)
T COG1113 371 GL--LFVWLMILLSQLKLRK 388 (462)
T ss_pred HH--HHHHHHHHHHHHHHHh
Confidence 43 3444455677777776
No 31
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.61 E-value=9.8e-13 Score=136.06 Aligned_cols=364 Identities=12% Similarity=0.057 Sum_probs=200.9
Q ss_pred ccccHHHHHHHHHhhhhhhhHhhhHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHHHhc
Q 011737 32 RTGTVWTASAHIITAIVGSGVLSLAWGLA-QLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVKNYL 109 (478)
Q Consensus 32 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~-~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~~~~ 109 (478)
|+.+.++++...+++++|+|++.+|.... .+|....++.+++.++..........|.. +.++.+ ....+.+++.+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g---GG~y~y~~~~f 77 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELD---GGVYSYAKAGF 77 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC---CChhhhHHhHc
Confidence 57789999999999999999999998855 45633345566777777777777777753 222211 13445599999
Q ss_pred cCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCch-hHhH--HHHHHHhhCCCCCCcch
Q 011737 110 GGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPY-MMAL--GIVEILLSQIPNFHKLS 186 (478)
Q Consensus 110 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~--~~~~~pl~~~~~l~~l~ 186 (478)
||..++++.+..++.......++.....+++..+.+.+ . .....+ .++. .+..+-....+..+..+
T Consensus 78 G~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~-----~------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~ 146 (468)
T TIGR03810 78 GPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIF-----G------GGNNPPSIIGASVLLWCVHFLVLRGVEGAA 146 (468)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----c------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999888776666666666655555443211 0 001111 1111 11122222345555566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccc-cccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcC
Q 011737 187 WLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTL-TGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKS 265 (478)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 265 (478)
+++.+..+..+...++.+...+... +.+....+. .+.+ +.........++..++....|+|.|.+....+.+|.||
T Consensus 147 ~i~~i~~~~ki~~l~~~ii~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~ 223 (468)
T TIGR03810 147 FINTITTIAKLVPLFVFIVIGIFAF-KGDTFTNDFWGNAN--GGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK 223 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cHhhcCcccccccc--ccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC
Confidence 6655555444332222222112111 111100000 0000 00001111234557888999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcc----ccc----cccccccCCchhHHHHHHHHHHHHHHHhhhh
Q 011737 266 SPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHA----QGN----ILTGFGFYEPFWLIDLANFFIVVHLLGAYQV 337 (478)
Q Consensus 266 p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~----~~~----il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl 337 (478)
+ |+.+|++..+...+.++|++..+..+...+++. ++. +..+. ..++...+.+++.+++.+.+.--
T Consensus 224 ~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~---~g~~~~~~i~~~~~is~~~~~~~ 296 (468)
T TIGR03810 224 R----SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHM---VGTWGAVLINIGLIISILGAWLS 296 (468)
T ss_pred c----ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHH---cchHHHHHHHHHHHHHHHHHHHH
Confidence 6 899999999999999999988876665544321 111 11111 12345566666677766666544
Q ss_pred cccchHHHHHHHhhc-cCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHhhhhhh
Q 011737 338 LAQPVFGVVESWAGN-RWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMA-FPFFNEVLAFLGAIAYW 415 (478)
Q Consensus 338 ~~~p~~~~l~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~-~p~~~~vi~l~Ga~~~~ 415 (478)
.+...-+.+...-.+ ..|+ +..+.+..+.| ...+.....+.....++... .+.++.+.++.+. ..
T Consensus 297 ~~~~~sR~~~a~ardg~lP~--~f~k~~~~~tP---------~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~ 363 (468)
T TIGR03810 297 WTLLPAEIPLLMAKDKLMPK--YFGKENANGAP---------TNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AI 363 (468)
T ss_pred HHHHHHHHHHHHHhCCCccH--HHHhhCCCCCC---------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HH
Confidence 433333333332211 1221 11111112334 23333333332222222111 1345666665443 34
Q ss_pred hHHhhhhHHHHHHHhcC
Q 011737 416 PMTVYFPMEMYIVRKEI 432 (478)
Q Consensus 416 ~l~fi~P~l~~~~~~~~ 432 (478)
.+.|+++++.++|.+++
T Consensus 364 li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 364 LVPYLWSAAYQVKLSWR 380 (468)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78899999988888654
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.60 E-value=1.7e-12 Score=142.73 Aligned_cols=253 Identities=14% Similarity=0.095 Sum_probs=157.9
Q ss_pred CcccccHHHHHHHH-HhhhhhhhHhh-hHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHH
Q 011737 30 SRRTGTVWTASAHI-ITAIVGSGVLS-LAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKN 107 (478)
Q Consensus 30 ~~~~~s~~~a~~~l-~~~~iG~GiL~-lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~ 107 (478)
+.++.++++.++.- +.+++|+|++- +++.+.++|...+++++++.++++..+..-+.+......+. .-.-..+.++
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~--aGG~Y~yisr 151 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK--GGGAYYLISR 151 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccHHHHHHHH
Confidence 45678888888888 99999999885 88889999987788889999999999998888854331221 1133344789
Q ss_pred hccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchH
Q 011737 108 YLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSW 187 (478)
Q Consensus 108 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~ 187 (478)
.||+..+..++++.++.+..++..|.+..++++..+++..+.. .. ..+ ..+...+..+. ++++.+. ++...++
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~-~~-~~~-~~~~~iia~i~-l~ll~~I---n~~Gvk~ 224 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK-IM-VDP-INDIRIYGTVT-VVVLLGI---SFAGMEW 224 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cc-cCc-cccchHHHHHH-HHHHHHH---HHhhHHH
Confidence 9999999999999999999999999999999998876431100 00 000 00111111111 1112122 3334455
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCC-Cccccccccc---ccCc-chhhhhh-HHHHHhHHHHHHhhcchhHHHHHH
Q 011737 188 LSTIAASMSFSYAGIGMGLSFAKIVSGHG-EKTTLTGVEI---GLDL-TAADKTW-RIFQAIGNMAFACSYAAILIEIQD 261 (478)
Q Consensus 188 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~-~~~~~~~-~~~~~~~~~~faf~~~~~~~~i~~ 261 (478)
.+.+..++.+...+.++...+........ ......+.++ .... +...+.. ++...++++.+||.|......+-+
T Consensus 225 ~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sg 304 (953)
T TIGR00930 225 ENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISG 304 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544332111111111111111000 0000000000 0000 0011111 366788888899999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011737 262 TLKSSPPEQEVMKKANTIATFTATTLYLMCGCL 294 (478)
Q Consensus 262 ~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~ 294 (478)
|+||| +|+.++++..|+.+++++|+++.+.
T Consensus 305 ElKnP---~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 305 DLKDP---QKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred hccCh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 4899999999999999999988763
No 33
>PRK11021 putative transporter; Provisional
Probab=99.60 E-value=4.1e-12 Score=129.30 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=139.4
Q ss_pred cHHHHHHHHHhhhhhhhHhhhHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHHHhccCc
Q 011737 35 TVWTASAHIITAIVGSGVLSLAWGLA-QLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVKNYLGGR 112 (478)
Q Consensus 35 s~~~a~~~l~~~~iG~GiL~lP~af~-~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~~~~G~~ 112 (478)
+.++++...+++|+|+|++.+|-... .+|- ..+...++.+++.........|.. +.+++| .....+++.+||+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG----G~y~y~~~~~G~~ 76 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAG----GPAHFVGMAFGPR 76 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHhHHHHhCch
Confidence 57899999999999999999887755 4563 467777778888888888888853 333333 5556689999999
Q ss_pred ceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhH-hHHHHHHHhhCCCCCCcchHHHHH
Q 011737 113 KYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM-ALGIVEILLSQIPNFHKLSWLSTI 191 (478)
Q Consensus 113 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~pl~~~~~l~~l~~~s~~ 191 (478)
..+...+..+........+......+++..+++ .. . ...+.. +...+++-+.-.+..+...++...
T Consensus 77 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~--~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~ 143 (410)
T PRK11021 77 LGRVTGWLFLSVIPVGLPAALQIAAGFGQALFG-----WS------S--WQLLLAELLTLALLWLLNLRGASSSANLQTV 143 (410)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC-----CC------C--chHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999887765443333333344445444322 00 0 111111 111222222234444444444433
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCCchHH
Q 011737 192 AASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQE 271 (478)
Q Consensus 192 ~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 271 (478)
..+..+ .++...+... ..+..+ .++. .....+..++..++....|+|.|.+.+...-+|+||| +|
T Consensus 144 ~~~~~~----~i~~~~~~~~-~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k 208 (410)
T PRK11021 144 IALLIV----ALVVAIWWAG-DIKPAD-----IPFP--APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNP---ER 208 (410)
T ss_pred HHHHHH----HHHHHHHHHc-CCchhc-----CCCC--CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCc---cc
Confidence 222211 1111111111 101111 0110 0111233467788999999999999999999999999 48
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 011737 272 VMKKANTIATFTATTLYLMCGCL 294 (478)
Q Consensus 272 ~~~~~~~~a~~~~~~lY~~~g~~ 294 (478)
+.+|++..+..++.++|++..+.
T Consensus 209 ~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 209 DFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 34
>TIGR00909 2A0306 amino acid transporter.
Probab=99.58 E-value=2.4e-12 Score=131.96 Aligned_cols=294 Identities=11% Similarity=-0.019 Sum_probs=178.0
Q ss_pred cccccHHHHHHHHHhhhhhhhHhhhHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcCccccccHHHHHHHh
Q 011737 31 RRTGTVWTASAHIITAIVGSGVLSLAWGLA-QLGWIIGIATLVIFSGISLYTSGLLAECYR-APNSVKRNYTYRDAVKNY 108 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~-~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~-~~~~~~~~~sy~~l~~~~ 108 (478)
+|+.+.++.+...+++++|+|++.+|.... ..|. ..++.+++.+++.........|..+ .++.| ...+..++.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~ 76 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAG----SPYTYAYEA 76 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----cceeeHHHH
Confidence 578999999999999999999999997755 3453 3455566677777777777777533 22222 344558889
Q ss_pred ccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCc-cccCCch--hHhHHHHHHHhhCCCCCCcc
Q 011737 109 LGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPC-KYSYNPY--MMALGIVEILLSQIPNFHKL 185 (478)
Q Consensus 109 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~pl~~~~~l~~l 185 (478)
+||+.+++..+..++.....+..+....++++..+++... ...+....- ..++..+ ..+...++.-+...+..+..
T Consensus 77 ~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~ 155 (429)
T TIGR00909 77 MGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVG-LDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKES 155 (429)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHH
Confidence 9999999999999888888888888888888887764210 000100000 0011111 11222222333345566666
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcC
Q 011737 186 SWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKS 265 (478)
Q Consensus 186 ~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 265 (478)
.+++.+.....+...++++...+.+. +.+ +..+. .+.+..++..++....|+|.|.+......+|+||
T Consensus 156 ~~~~~v~~~~~i~~l~~~~~~~~~~~-~~~----~~~~~-------~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~ 223 (429)
T TIGR00909 156 GKVNDILVVLKVAALLLFAALGAIHF-ASN----NYTPF-------MPMGFGGVGAATALVFFAFIGFEAISTAAEEVKN 223 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhC-cHH----hcCCC-------CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccC
Confidence 66666666555443222222222211 111 11110 0122346778899999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcc--cc-c----cccccccCCchhHHHHHHHHHHHHHHHhhhhc
Q 011737 266 SPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHA--QG-N----ILTGFGFYEPFWLIDLANFFIVVHLLGAYQVL 338 (478)
Q Consensus 266 p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~--~~-~----il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 338 (478)
| +|+.+|++..++.++.++|++.........+.+. ++ . +.... ..++...+..+..+++.+.+..-.
T Consensus 224 p---~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~ 297 (429)
T TIGR00909 224 P---ERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDL---GQGIGGLILTAGAVFSIASVMLAG 297 (429)
T ss_pred c---cccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHh---CchHHHHHHHHHHHHHHHHHHHHH
Confidence 8 4789999999999999999987765443322211 11 0 11111 234445566666666666665444
Q ss_pred ccchHHHHHH
Q 011737 339 AQPVFGVVES 348 (478)
Q Consensus 339 ~~p~~~~l~~ 348 (478)
.....+.+..
T Consensus 298 ~~~~sR~~~~ 307 (429)
T TIGR00909 298 IYGTSRVLFA 307 (429)
T ss_pred HHHHHHHHHH
Confidence 4333333333
No 35
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.58 E-value=1.7e-13 Score=136.27 Aligned_cols=370 Identities=12% Similarity=0.110 Sum_probs=219.8
Q ss_pred CCCCCcccccHHHHHHHHHhhhhhhhHhhhHHHHHh-hC-hHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcCccccccHH
Q 011737 26 DDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQ-LG-WIIGIATLVIFSGISLYTSGLLAECYR-APNSVKRNYTYR 102 (478)
Q Consensus 26 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~-~G-~~~g~~~l~~~~~~~~~t~~~l~~~~~-~~~~~~~~~sy~ 102 (478)
|+...+|+.+.+.++..+++.++|+|++..|..... +| ...++++.+++++++......-.|.-- -+++|. ++.|
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg-d~ay- 83 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG-DYAY- 83 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc-chhh-
Confidence 334557889999999999999999999999999764 54 445778888999999999888888411 112221 2333
Q ss_pred HHHHHhccCcceeehHHHHHHHHhhhH-HHHHHHHhhh-HHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCC
Q 011737 103 DAVKNYLGGRKYKALGLVQYTLLCGAM-VGYTITASIS-MVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIP 180 (478)
Q Consensus 103 ~l~~~~~G~~~~~~~~~~~~~~~~g~~-i~y~i~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~ 180 (478)
..++||+...+...+.-.+...... ..+.+..+++ +++..+ . |..+....-.+..+++. +....
T Consensus 84 --i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~----------c~~p~~~~~lla~~~l~-~lt~~ 149 (479)
T KOG1287|consen 84 --ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L----------CDVPRVASKLLAAALLV-LLTLI 149 (479)
T ss_pred --HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C----------CCCchHHHHHHHHHHHH-HHHHH
Confidence 6788999888877776555555444 7777777777 555432 1 23222322233333333 33466
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhh---hhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHH
Q 011737 181 NFHKLSWLSTIAASMSFSYAGIGMGLS---FAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILI 257 (478)
Q Consensus 181 ~l~~l~~~s~~~~~~~~~~~~i~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~ 257 (478)
|..+.++.+.+..++...-.+.+.... ++....++..+....+.+ ....+.-++..++-...|||.|++.+.
T Consensus 150 n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~-----g~~~~~g~i~lafysglfa~~GWd~lN 224 (479)
T KOG1287|consen 150 NSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE-----GSDTDVGNIALAFYSGLFAFSGWDYLN 224 (479)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccc-----cCcCchHHHHHHHHHhhhcccCchhhc
Confidence 777777777777666654333333332 232222111110000010 001222357789999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccc---cccccccccC-CchhHHHHHHHHHHHHHHH
Q 011737 258 EIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQ---GNILTGFGFY-EPFWLIDLANFFIVVHLLG 333 (478)
Q Consensus 258 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~---~~il~~~~~~-~~~~~~~~~~~~~~i~~~~ 333 (478)
.+-+|+||| +|+++|++..|+.++++.|+++-+..+.+...+.- +-+.-.+... -..+. -..-+.+.++.+.
T Consensus 225 ~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G 300 (479)
T KOG1287|consen 225 YVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIG 300 (479)
T ss_pred cchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhh
Confidence 999999999 58999999999999999999998887776643321 1111112110 11222 3444455555555
Q ss_pred hhhhcccchHHHHHHHhh-ccCCCCccCCcccccc-cCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhh
Q 011737 334 AYQVLAQPVFGVVESWAG-NRWPKSKFINDEHHLG-IGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGA 411 (478)
Q Consensus 334 s~pl~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga 411 (478)
+.--.++.....+..... .+.|+. ....+..+ .| . ..++......++.....|+..+++.++=
T Consensus 301 ~~n~~ifs~SR~~~~~areG~LP~~--~s~i~~~~~TP---------~----~allf~~~~~i~~~~~~d~~~LIny~sf 365 (479)
T KOG1287|consen 301 SLNSVIFSSSRLFYAGAREGHLPAF--FSMISVRRFTP---------R----PALLFSGLLSIVLSLIGDFDQLINYVSF 365 (479)
T ss_pred hhhhHHHHHHHHHHHHHHccCccHH--HHhhcCCCCCC---------h----HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444333322222222111 011110 00000000 12 1 1233333444445556689999999887
Q ss_pred hhhhhHHhhhhHHHHHHHhcCCCc
Q 011737 412 IAYWPMTVYFPMEMYIVRKEIKRG 435 (478)
Q Consensus 412 ~~~~~l~fi~P~l~~~~~~~~~~~ 435 (478)
.-.....+.+=+++++|.++++..
T Consensus 366 ~~~l~~~l~~~gll~lR~k~p~~~ 389 (479)
T KOG1287|consen 366 AYWLFRGLSMAGLLWLRWKHPPLP 389 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCC
Confidence 777778888889999999887643
No 36
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.57 E-value=1.1e-11 Score=128.84 Aligned_cols=245 Identities=11% Similarity=0.018 Sum_probs=151.3
Q ss_pred cccccHHHHHHHHHhhhhhhhHhhhH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhc
Q 011737 31 RRTGTVWTASAHIITAIVGSGVLSLA-WGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYL 109 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~GiL~lP-~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~ 109 (478)
+|+.+.++.....++.++|+|++..| .+.+.+|-...+..+++.+++.......+.|.... .|. ..-.|.+.+++.+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~-~P~-~gG~~~~~~~~~~ 78 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATF-YPV-VSGSFATYASRFV 78 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC-CCCCHHHHHHHHc
Confidence 46788999999999999999999755 55667774334566777788888888888885332 221 0136778899999
Q ss_pred cCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHH
Q 011737 110 GGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLS 189 (478)
Q Consensus 110 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s 189 (478)
||...+++.+..++.....+.......+.++..+.+ ......+..+.. ++.-+.-.+..+..+++.
T Consensus 79 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~in~~gv~~~~~~~ 144 (478)
T TIGR00913 79 DPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFY-VFIVIINLFGVKGYGEAE 144 (478)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHH-HHHHHHHHhcchHHHHHH
Confidence 999999999999888877777777777766653211 011112222211 122222344555555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccc--cCcchh---hhhhHHHHHhHHHHHHhhcchhHHHHHHhhc
Q 011737 190 TIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIG--LDLTAA---DKTWRIFQAIGNMAFACSYAAILIEIQDTLK 264 (478)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 264 (478)
.......+...+..++..+.....+.+.+.......|. ....+. ....++..++....|+|.|.+....+-+|+|
T Consensus 145 ~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k 224 (478)
T TIGR00913 145 FWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAA 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhc
Confidence 44443322211111111111111111100000000000 001111 1234677889999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011737 265 SSPPEQEVMKKANTIATFTATTLYLMCGCL 294 (478)
Q Consensus 265 ~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~ 294 (478)
|| +|+.+|++..+...+.++|++..+.
T Consensus 225 nP---~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 225 NP---RKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred Ch---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 5899999999999999999986543
No 37
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.53 E-value=1.6e-11 Score=126.15 Aligned_cols=349 Identities=10% Similarity=0.057 Sum_probs=190.9
Q ss_pred HHhhhhhhhHhhhHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHHHhccCcceeehHHH
Q 011737 43 IITAIVGSGVLSLAW-GLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVKNYLGGRKYKALGLV 120 (478)
Q Consensus 43 l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~ 120 (478)
-++++||+|++..|- +++++|. ..++..++.+++....+....|.. +.+++| ...+.+++.+||+.++.+.+.
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G----g~y~y~~~~~G~~~gf~~gw~ 77 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG----SFSTYADKAIGRWAGYTIGWL 77 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHcChHHHHHHHHH
Confidence 367899999998777 6778885 477888888888888888888853 333322 677779999999999999999
Q ss_pred HHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhH-hHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 011737 121 QYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM-ALGIVEILLSQIPNFHKLSWLSTIAASMSFSY 199 (478)
Q Consensus 121 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 199 (478)
.++.....+.......+..++...+ . ...+.. +...+++-+.-.+..|..+.+.....+..+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~ 142 (446)
T PRK10197 78 YWWFWVLVIPLEANIAAMILHSWVP-------------G--IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIA 142 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-------------c--CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence 9887766665554444444332210 1 111111 11111122222334444444444444433332
Q ss_pred HHHHHhhhhhhhhccCCCcccccc--cccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCCchHHHHHHHH
Q 011737 200 AGIGMGLSFAKIVSGHGEKTTLTG--VEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQEVMKKAN 277 (478)
Q Consensus 200 ~~i~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 277 (478)
.+..+...+.......+.. ...+ ..|+.+...+....++..++....|+|.|.+.+....+|+||| +|+.+|++
T Consensus 143 li~~ii~~~~~~~g~~~~~-~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai 218 (446)
T PRK10197 143 ILAFIFLGAVAISGFYPYA-EVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRAT 218 (446)
T ss_pred HHHHHHHHHHHhcCCCCCC-CCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHH
Confidence 2222222121111001100 0000 0011000011223477899999999999999999999999999 57999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCccc-----c---ccccccccCCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHH
Q 011737 278 TIATFTATTLYLMCGCLGYAALGNHAQ-----G---NILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESW 349 (478)
Q Consensus 278 ~~a~~~~~~lY~~~g~~gy~~fg~~~~-----~---~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~ 349 (478)
..++..+.++|+...+.-......+.. + ...+.. ...+...+.++..+++.+.+..-.++...+.+...
T Consensus 219 ~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ 295 (446)
T PRK10197 219 NSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELL---NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSL 295 (446)
T ss_pred HHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999765543222221111 1 112222 22344456666666666666554444444444433
Q ss_pred hhc-cCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHhhhhhhhHHhhhhHHHH
Q 011737 350 AGN-RWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFP--FFNEVLAFLGAIAYWPMTVYFPMEMY 426 (478)
Q Consensus 350 ~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p--~~~~vi~l~Ga~~~~~l~fi~P~l~~ 426 (478)
-.+ ..|+ +..+.+..+.| ..-+.......++..+.....| .++.++++.+... .+.++++++.+
T Consensus 296 ardg~lP~--~~~~~~~~~~P---------~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~ 362 (446)
T PRK10197 296 SRRGDAPA--VMGKINRSKTP---------YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQ 362 (446)
T ss_pred HcCCCcCH--HHHhhCcCCCc---------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 221 1121 11111111233 3333333333333333332233 3677777776555 47888888777
Q ss_pred HHHhc
Q 011737 427 IVRKE 431 (478)
Q Consensus 427 ~~~~~ 431 (478)
++.+|
T Consensus 363 i~lr~ 367 (446)
T PRK10197 363 LRMRK 367 (446)
T ss_pred HHHHH
Confidence 77765
No 38
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.53 E-value=1.3e-11 Score=128.90 Aligned_cols=250 Identities=12% Similarity=0.077 Sum_probs=145.9
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhhhHHH-HHhhChH-HHHHHHHHHHHHHHHHHHHHHHhhc-CCcCccccccHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLSLAWG-LAQLGWI-IGIATLVIFSGISLYTSGLLAECYR-APNSVKRNYTYRDA 104 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~-~g~~~l~~~~~~~~~t~~~l~~~~~-~~~~~~~~~sy~~l 104 (478)
++.+|+.+.++++...+++++|+|++..|.. .+++|-. ..++.+++.+++.........|... .++.| ...+.
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sG----G~y~~ 113 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSG----GEYNY 113 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----chhhh
Confidence 3457889999999999999999999998876 4556632 1234556677777777777777532 22222 44555
Q ss_pred HHHhccCcceeehHHHHHHH-HhhhHHHHHHHHhhhHHH-HHhhhccccCCCCCCccccCCchhHhH--HHHHHHhhCCC
Q 011737 105 VKNYLGGRKYKALGLVQYTL-LCGAMVGYTITASISMVA-ISKSNCYHKEGHKAPCKYSYNPYMMAL--GIVEILLSQIP 180 (478)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~-~~g~~i~y~i~~~~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~pl~~~~ 180 (478)
.++.+||...++..+..+.. ..+.+..+....++++.. +.+. . ........++. .+++.-+.-.+
T Consensus 114 ~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----~------~~~~~~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 114 ILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD-----C------EVPEWAIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----C------CCchHHHHHHHHHHHHHHHHHHHh
Confidence 78899999888887765432 234444555555555422 2110 0 00011111111 11122222344
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHH
Q 011737 181 NFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQ 260 (478)
Q Consensus 181 ~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~ 260 (478)
..+...++..+.....+...++++...+.....++..+.+... .+. ....+..++..++....|+|.|.+.+..+.
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~-~f~---~~~~~~~~~~~a~~~~~~af~G~e~~~~~a 258 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKN-AFE---GTETSAGGIVLAFYSGIWAYGGWNYLNFVT 258 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCccc-ccC---CCCCcHHHHHHHHHHHHHHHHhHHHHhhhH
Confidence 4555555555554444432222222222221111111100000 000 001223467788999999999999999999
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 011737 261 DTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAAL 299 (478)
Q Consensus 261 ~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~f 299 (478)
+|+||| +|+.+|++..+..++.++|++..+.-....
T Consensus 259 ~E~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 259 EEVKNP---YRTLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHhcCc---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999 489999999999999999998865544333
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.51 E-value=3.2e-11 Score=124.07 Aligned_cols=240 Identities=13% Similarity=0.003 Sum_probs=146.9
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVK 106 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~ 106 (478)
++.+|+.|.++.+...++.++|......+.+++..|+..-+...++.+++....+..+.|.. +.++.| .....++
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G----g~y~~~~ 78 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG----GGYGFAR 78 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHH
Confidence 34678899999999999999984445678888889986445555666666666666677743 333322 5556789
Q ss_pred HhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcch
Q 011737 107 NYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLS 186 (478)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~ 186 (478)
+.+||..++++.+..++........+....++++..+.+. .. .+...+....++-+.-.+..+..+
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~-~~~~~~~~~~~~~~ln~~g~~~~~ 144 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GP-GWLAALVFYIVFIGINILGVGEAA 144 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------Cc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888888888888888765431 00 111111111112222233344444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccccccccccc-CcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcC
Q 011737 187 WLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGL-DLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKS 265 (478)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 265 (478)
++.....+..+....+.+. .. .. +....+....++.. +...+....++..++....|+|.|.+.....-+|+||
T Consensus 145 ~i~~~~~~~~~~~l~i~~~--~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~ 219 (442)
T TIGR00908 145 KLEFVVTAVAIIALGVFIG--AM--VP-HFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKN 219 (442)
T ss_pred hHHHHHHHHHHHHHHHHHH--HH--hc-cCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4443333322211111111 11 00 00000000000100 0011122336778888899999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhh
Q 011737 266 SPPEQEVMKKANTIATFTATTLYLMCGC 293 (478)
Q Consensus 266 p~~~~~~~~~~~~~a~~~~~~lY~~~g~ 293 (478)
| +|+.+|++..+..++.++|+....
T Consensus 220 P---~r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 220 P---KRDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred c---ccccCHHHHHHHHHHHHHHHHHHH
Confidence 9 478999999999999998886644
No 40
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.51 E-value=2.2e-11 Score=125.40 Aligned_cols=244 Identities=14% Similarity=0.125 Sum_probs=144.5
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhhhHHHH-HhhCh-HHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLSLAWGL-AQLGW-IIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDA 104 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af-~~~G~-~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l 104 (478)
++.+|+.+.++++...++.++|+|++..|... +..|- ...+..+++.+++.........|.. ..++.| ..+.|
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G-G~y~y--- 79 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG-ADYVY--- 79 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-Cceee---
Confidence 45678899999999999999999999988764 45563 2345566677777777777777753 223322 13455
Q ss_pred HHHhccCcceeehHHHHHH-HHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCC
Q 011737 105 VKNYLGGRKYKALGLVQYT-LLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFH 183 (478)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~-~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~ 183 (478)
.++.+||...++..+..+. ........+....++++....+ . . .. ......+..+..+-..-.+..+
T Consensus 80 ~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-----~---~---~~-~~~~~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 80 LKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP-----I---D---PL-LGKFIAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C---c---hH-HHHHHHHHHHHHHHHHHHhhhh
Confidence 6788999988888886443 3334445555666666553311 0 0 00 0011111111112222345555
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhh
Q 011737 184 KLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTL 263 (478)
Q Consensus 184 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 263 (478)
...++..+..+..+...++++...+.. ..+++...... .. .....+..++..++....|+|.|.+....+.+|+
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~-~~~~~~~~~~~-~~----~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~ 221 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFW-FKAENFAAPTT-TA----IGATGSFMALLAGISATSWSYTGMASICYMTGEI 221 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccccCCCc-cc----ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh
Confidence 555555544444333221222221211 11111110000 00 0011123356788899999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011737 264 KSSPPEQEVMKKANTIATFTATTLYLMCGCLGY 296 (478)
Q Consensus 264 ~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy 296 (478)
||| +|+.+|++..++.++.++|++......
T Consensus 222 k~P---~r~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 222 KNP---GKTMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred cCc---cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 479999999999999999998766443
No 41
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.43 E-value=4.3e-11 Score=119.66 Aligned_cols=239 Identities=13% Similarity=0.077 Sum_probs=153.1
Q ss_pred ccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccC
Q 011737 32 RTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGG 111 (478)
Q Consensus 32 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~ 111 (478)
+|.|.+|.++.++++++|+|++.+|....+.+-..+++..++.+.........+.+..++ .|+ .+..|..++.+||
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~-~p~---~~~~~~~~~~~Gk 76 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSK-FPE---KNFSEILSKYLGK 76 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHH-CCC---CCHHHHHHHHhhH
Confidence 367889999999999999999999998776443456667777888888888888886543 343 3788999999999
Q ss_pred cceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhH-hHHHHHHHhhCCCCCCcchHHHH
Q 011737 112 RKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM-ALGIVEILLSQIPNFHKLSWLST 190 (478)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~pl~~~~~l~~l~~~s~ 190 (478)
+.++++.+....+....+.......++.++... .+. .+.+.. +..+++.-....+.++...+++.
T Consensus 77 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~----------tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 77 ILGRLLSILFILYFFLIAAYLIRIFADFIKTYL----LPR----------TPIIVIIILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCC----------CCHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 999999888777776666555555566554332 111 122222 22222222223455555555555
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHh-HHHHHHhhcchhHHHHHHhhcCCCch
Q 011737 191 IAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAI-GNMAFACSYAAILIEIQDTLKSSPPE 269 (478)
Q Consensus 191 ~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~~~~i~~~m~~p~~~ 269 (478)
+.....+... .+..... ..++... .+..+. . ..+..+...+. ....++|.+.........++|||
T Consensus 143 i~~~~~i~~~--~~il~~~-~~~~~~~-~~l~P~------~-~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~--- 208 (359)
T TIGR00912 143 ILLIIFLILF--ILVLILL-APKLGNI-KNLLPV------L-ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK--- 208 (359)
T ss_pred HHHHHHHHHH--HHHHHHH-hcccccH-HHccCc------c-ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh---
Confidence 5444333210 0111111 1111101 111111 0 11223444444 47889999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcc
Q 011737 270 QEVMKKANTIATFTATTLYLMCGCLGYAALGNHA 303 (478)
Q Consensus 270 ~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~ 303 (478)
|+.+|+...+..++.++|...-+.....+|.+.
T Consensus 209 -~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 209 -KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 889999999999999999988888888888654
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.41 E-value=1.4e-10 Score=118.75 Aligned_cols=291 Identities=13% Similarity=0.085 Sum_probs=169.0
Q ss_pred ccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHHHhhcCCcCccccccHHHHHHHhccCc
Q 011737 34 GTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGIS-LYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGR 112 (478)
Q Consensus 34 ~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~-~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~ 112 (478)
.|+++++...++.++|+|++..| ...+.|.. .++..++.+.+. ........|..+. .|. .....+.+++.+||+
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p~--~GG~y~~~~~~~g~~ 75 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YPS--AGGIYVWVSRAFGPF 75 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTS--STTHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCC--cCeeeehhhhccccc
Confidence 36789999999999999999999 77777754 444444444444 4555555664331 221 236667799999999
Q ss_pred ceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccC-CchhHh---HHHHHHHhhCCCCCCcchHH
Q 011737 113 KYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSY-NPYMMA---LGIVEILLSQIPNFHKLSWL 188 (478)
Q Consensus 113 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~-~~~~~l---~~~~~~pl~~~~~l~~l~~~ 188 (478)
.+++..+...+.....+..+.....+++...++. .... .+...+ ..++.......+..|..+++
T Consensus 76 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~ 143 (426)
T PF13520_consen 76 WGFIVGWLYWVAYILSLASVASSFASYLLSLFGP------------DLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKI 143 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG------------GGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred chhcccceeEEEeeccccccccchhhhhhhcccc------------ccccccchheeeeecccccceEeeechhhhhhhh
Confidence 9999999999888888888887777777654321 1111 111111 12222223334445555555
Q ss_pred HHHHHHHHH-HHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCC
Q 011737 189 STIAASMSF-SYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSP 267 (478)
Q Consensus 189 s~~~~~~~~-~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 267 (478)
........+ ...++.+...+..... ++.... ...++ +..+ ........++....|+|.|.+....+.+|+||
T Consensus 144 ~~~~~~~~i~~~l~~~i~~~~~~~~~-~~~~~~--~~~~~-~~~~-~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-- 216 (426)
T PF13520_consen 144 QNILTVIKIVIPLLVLIILGIVSFSF-SGFNSL--SFSLS-TFFP-SGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-- 216 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTC-CHHH------SHS-CSSC-SSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--
T ss_pred hhhhhhhhhhhhhhhheeEEEeeecc-cccccc--ccccc-ccCC-ccccchhhHHHHHHhhcccccccccccccccc--
Confidence 555554444 2222222222222211 111000 00000 0000 11114578899999999999999999999774
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccc---ccccccc----ccCCchhHHHHHHHHHHHHHHHhhhhccc
Q 011737 268 PEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQ---GNILTGF----GFYEPFWLIDLANFFIVVHLLGAYQVLAQ 340 (478)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~---~~il~~~----~~~~~~~~~~~~~~~~~i~~~~s~pl~~~ 340 (478)
|+.+|++..+..++.++|.+..+.-....+++.. ++..+.. ......+...+..+...+..+.+......
T Consensus 217 ---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 293 (426)
T PF13520_consen 217 ---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIF 293 (426)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhc
Confidence 6999999999999999999987766666655322 1211001 00012355566666666666666655554
Q ss_pred chHHHHHHHhh
Q 011737 341 PVFGVVESWAG 351 (478)
Q Consensus 341 p~~~~l~~~~~ 351 (478)
...+.+...-.
T Consensus 294 ~~sR~l~~~a~ 304 (426)
T PF13520_consen 294 GASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHH
T ss_pred chhhccccccc
Confidence 44445555443
No 43
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.36 E-value=7.7e-10 Score=110.99 Aligned_cols=367 Identities=14% Similarity=0.052 Sum_probs=239.2
Q ss_pred CcccccHHHHHHHHHhhhhhhhHh-hhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHHH
Q 011737 30 SRRTGTVWTASAHIITAIVGSGVL-SLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVKN 107 (478)
Q Consensus 30 ~~~~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~~ 107 (478)
.+|+....+..+.-++..||+|++ +...+.+++|-...++..++++.+.+..+.-|.|.. ..+.. -+|.+.+.+
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~s----GsF~~ya~r 117 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVS----GSFSTYATR 117 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----Cchhhhhhh
Confidence 568888999999999999999977 699999999987778888999999999999999953 22322 378888999
Q ss_pred hccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHH--hhCCCCCCcc
Q 011737 108 YLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEIL--LSQIPNFHKL 185 (478)
Q Consensus 108 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p--l~~~~~l~~l 185 (478)
..++..++.+++..++....++..-++..+..++...+. ..+...|..++.++++. +.-.|...+.
T Consensus 118 fvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~ 185 (541)
T COG0833 118 FVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFGET 185 (541)
T ss_pred hcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhccccccee
Confidence 999999999999999999999999999888888766421 12334555555444433 3346666666
Q ss_pred h-HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhc
Q 011737 186 S-WLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLK 264 (478)
Q Consensus 186 ~-~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 264 (478)
. ++|.+-++.++.+..+.++. +..+.++++.-. .--|..+-.....+.++...+-+..|||.|.+.+--...|-+
T Consensus 186 Efw~s~iKV~~ii~Fii~gii~-~~Gg~~~~~~ig---~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~ 261 (541)
T COG0833 186 EFWFSSIKVLTIIGFIILGIII-ICGGGPTHGYIG---FNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESE 261 (541)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCcc---eeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccC
Confidence 6 45666666655443332222 222222211100 000110011123345777888889999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhh-hhhh-cccCc----------cccccccccccCCchhHHHHHHHHHHHHHH
Q 011737 265 SSPPEQEVMKKANTIATFTATTLYLMCGC-LGYA-ALGNH----------AQGNILTGFGFYEPFWLIDLANFFIVVHLL 332 (478)
Q Consensus 265 ~p~~~~~~~~~~~~~a~~~~~~lY~~~g~-~gy~-~fg~~----------~~~~il~~~~~~~~~~~~~~~~~~~~i~~~ 332 (478)
|| +|..+|++.-...-..++|+..-+ .|.+ -|.|. .+++....+...+-..+..+.|+.+.++++
T Consensus 262 nP---~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svl 338 (541)
T COG0833 262 NP---RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVL 338 (541)
T ss_pred Cc---hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHH
Confidence 99 589999999999999999984332 3332 33331 111222222222334566788888888888
Q ss_pred HhhhhcccchHHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHh
Q 011737 333 GAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFP--FFNEVLAFLG 410 (478)
Q Consensus 333 ~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p--~~~~vi~l~G 410 (478)
.+---.++.....+...-.... ..++.++-...+.| ...+.++.++-+++++.+.... -++-++++.|
T Consensus 339 Sa~NS~lYasSR~L~sLA~~g~-APk~f~~~~r~GvP---------~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg 408 (541)
T COG0833 339 SAANSGLYASSRMLYSLAKQGK-APKIFAKVDRRGVP---------LVALLVTLLFGLLAFLNSSFKETTVFNWLLNISG 408 (541)
T ss_pred HHhhccchHHHHHHHHHHhcCC-CchHHHhhCCCCCc---------hHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 7766666666666666543321 11111211112333 4556666666666666665532 2566677666
Q ss_pred hhhhhhHHhhhhHHHHHHHhc
Q 011737 411 AIAYWPMTVYFPMEMYIVRKE 431 (478)
Q Consensus 411 a~~~~~l~fi~P~l~~~~~~~ 431 (478)
... +++.+.=++.|++.||
T Consensus 409 ~s~--~i~W~~I~~shirFR~ 427 (541)
T COG0833 409 LSG--FIAWGSICLSHIRFRR 427 (541)
T ss_pred HHH--HHHHHHHHHHHHHHHH
Confidence 443 5666667888888764
No 44
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.33 E-value=1.1e-08 Score=106.29 Aligned_cols=255 Identities=12% Similarity=-0.052 Sum_probs=140.8
Q ss_pred CCCcccccHHHHHHHHHhhh-hhhhHhhhHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAI-VGSGVLSLAW-GLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDA 104 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~-iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l 104 (478)
++.+|+.|.++.+..-++.+ +|+|+.+++. +..+.|- ..+..+++.++........+.|.. +.+++| ...+.
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG----G~Y~~ 83 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG----AIYQW 83 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----CHHHH
Confidence 45678899999988888774 8999998554 4556664 345556666777777777777742 333333 55566
Q ss_pred HHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCcc-cc--CCchhHhH-HHHHHHhhCCC
Q 011737 105 VKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCK-YS--YNPYMMAL-GIVEILLSQIP 180 (478)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~-~~--~~~~~~l~-~~~~~pl~~~~ 180 (478)
+++.+||...+++.+..++.....+..........+..+.+.+ ...+.+.... .. +..+.+.. .+++.-+.-.+
T Consensus 84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~ 161 (475)
T TIGR03428 84 SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGF--QIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCI 161 (475)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhcccCccccCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999998888766555444444444444332110 0000000000 00 11111111 11122222234
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHH
Q 011737 181 NFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQ 260 (478)
Q Consensus 181 ~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~ 260 (478)
..|...++..+..+..+...++++...+.+. ++++. ..... .+.+ ........+..+.....|+|.|.+....+-
T Consensus 162 g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~-~~~~~-~~f~~-~~~~--~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 236 (475)
T TIGR03428 162 GVEWMSRVNTIGVTCEIVGVLAVIGVLFTHA-QRGPG-VVFDT-SVTG--ASPGYYGAFLVSGLMAAYVMVGFGSAGELS 236 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcc-eeeec-CCCC--CCccHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 4555555555544443322222222212111 11110 00000 0100 001112245556667889999999999999
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011737 261 DTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYA 297 (478)
Q Consensus 261 ~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~ 297 (478)
+|+||| +|+.+|++..++.+..++|.+.-+....
T Consensus 237 eE~knP---~r~iPrai~~s~~i~~~~~~~~~~~~~~ 270 (475)
T TIGR03428 237 EETKNP---RRVAPRTILTALSVSALGGGLMILGALM 270 (475)
T ss_pred HHhcCc---chhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 5899999999999888766654444333
No 45
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.32 E-value=3.8e-09 Score=109.90 Aligned_cols=249 Identities=12% Similarity=-0.006 Sum_probs=132.0
Q ss_pred CCCcccccHHHHHHHHHhhhhh--hhHhh-hHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVG--SGVLS-LAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRD 103 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG--~GiL~-lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~ 103 (478)
++.+|+.+.++.+..-+. ++| .|+.. ++.+..+.|-...+...++.+++....+..+.|.. +.++.| ...+
T Consensus 8 ~~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G----g~y~ 82 (482)
T TIGR00907 8 PELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG----GQYF 82 (482)
T ss_pred ceeecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc----cHHH
Confidence 345778888887766666 454 66654 56677778854446677778888888888888853 333322 5556
Q ss_pred HHHHhccC----cceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhH-HHHHHHhhC
Q 011737 104 AVKNYLGG----RKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMAL-GIVEILLSQ 178 (478)
Q Consensus 104 l~~~~~G~----~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~pl~~ 178 (478)
.+++++|+ ...+++.+..++.....+.+.....++++..+... .+..+... ...+....+.. ...+.-+.-
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~i~~~~~~~~~~in 158 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSL--TTPGREYI--PTRWHIFGIMIGIHLIHALIN 158 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCcc--ccCchhhhhHHHHHHHHHHHH
Confidence 67888875 45666677777776666666666666666655432 11110000 00111111111 111122222
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCCcccccccccccCcch-hhhhhHHHHHhHHHHHHhhcchhH
Q 011737 179 IPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSG-HGEKTTLTGVEIGLDLTA-ADKTWRIFQAIGNMAFACSYAAIL 256 (478)
Q Consensus 179 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~ 256 (478)
.+..|.++.+.....+..+...++++...+.....+ +..+....+. .++... ..+-+....++....|+|.|.+..
T Consensus 159 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~--~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 159 SLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNF--NNSTGGWKPGGFAFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheee--eCCCCCcCCCchhhhhhhhhhHHHhcCcchh
Confidence 333344444443333332221111111111111000 0000000000 000000 011124556666678999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011737 257 IEIQDTLKSSPPEQEVMKKANTIATFTATTLYLM 290 (478)
Q Consensus 257 ~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~ 290 (478)
..+-+|+||| +|+.+|++..++.++.++|.+
T Consensus 237 ~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~ 267 (482)
T TIGR00907 237 AHMAEEIENP---EVVGPRAIIGAVAIGIVTGFC 267 (482)
T ss_pred hHHHHhcCCh---hhhcCHHHHHHHHHHHHHHHH
Confidence 9999999999 589999999998877665443
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.30 E-value=5.6e-09 Score=108.18 Aligned_cols=253 Identities=14% Similarity=0.090 Sum_probs=155.9
Q ss_pred CCCCCcccccHHH-HHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHH
Q 011737 26 DDGRSRRTGTVWT-ASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDA 104 (478)
Q Consensus 26 ~~~~~~~~~s~~~-a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l 104 (478)
++++.+|+.+.++ ......+.++|.|++.+|......+ ......+++.+.+.........|..+ ..|. .-.+.+.
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~-~~p~--~GG~y~~ 81 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSS-AIPS--AGGAYAY 81 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC--CCCeeee
Confidence 3445556666777 7888899999999999998887665 22222244444555555555555433 2231 1245555
Q ss_pred HHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHH---HHHhhCCCC
Q 011737 105 VKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIV---EILLSQIPN 181 (478)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~pl~~~~~ 181 (478)
+++.+||+.++++.+..++.......+........+..+.+.. ... .... +...+.+.+ .+-+.-.+.
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~-~~~~~~~~~~~~~~~~ln~~G 152 (466)
T COG0531 82 AKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGP--GLL------SIGP-LLIILIALALIALLTLLNLRG 152 (466)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--hhh------cCCc-hHHHHHHHHHHHHHHHHHHhh
Confidence 8999999988999999999998888888888888776664320 000 0000 112222222 222223455
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHH
Q 011737 182 FHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQD 261 (478)
Q Consensus 182 l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 261 (478)
.+...++.....+..+...+++....+.....+. .. ...... ........+..++....++|.|-+...+.-+
T Consensus 153 ~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~ 225 (466)
T COG0531 153 IKASAKINSIITILKIIILLIFIILGLFAFGFSN-GN-LFAPFN-----PGGGSFGGILAAILLAFFAFTGFEAIATLAE 225 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-cc-cCCCcc-----cccchHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 5555555555555544433333333333322211 00 001000 0011122577889999999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 011737 262 TLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGN 301 (478)
Q Consensus 262 ~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~ 301 (478)
|+||| +|+.+|++..++..+.++|.+..+.-....++
T Consensus 226 E~knp---~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 226 EVKNP---KRTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 99998 47799999999999999999888877776665
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.27 E-value=2.5e-08 Score=104.04 Aligned_cols=253 Identities=10% Similarity=0.007 Sum_probs=130.4
Q ss_pred CcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHhh-cCCc-CccccccHHHHHH
Q 011737 30 SRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISL-YTSGLLAECY-RAPN-SVKRNYTYRDAVK 106 (478)
Q Consensus 30 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~-~t~~~l~~~~-~~~~-~~~~~~sy~~l~~ 106 (478)
.+|+.|.++.+...+++++|.+ .+|.+++..|.. +++..++.+.+.. .......|.. ..++ .| .-.+..+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG----G~Y~w~~ 77 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG----GIYSWMN 77 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHH
Confidence 3678999999999999999975 569888888853 5555555554433 3444556642 2332 22 4445589
Q ss_pred HhccCcceeehHHHHHHHHhhhHHHHHHHHhh-hHHHHHhhhccccCCCCCCccccCCchh-HhHHHH--HHHhhCCCCC
Q 011737 107 NYLGGRKYKALGLVQYTLLCGAMVGYTITASI-SMVAISKSNCYHKEGHKAPCKYSYNPYM-MALGIV--EILLSQIPNF 182 (478)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~--~~pl~~~~~l 182 (478)
+++|++.+++..+..+................ ....+......+.. +. ...+..... ++..+. +.-....|.+
T Consensus 78 ~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~a~~~~~~~t~vn~~g~ 154 (496)
T PRK15238 78 KSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTW--HF-LGLNSTQVVGILAVIWMILVTFVASKGI 154 (496)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhh--hh-hcccchHHHHHHHHHHHHHHHHHHccch
Confidence 99999988876665444333222111100000 00001000000000 00 001111111 111111 2223345666
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhh-hhhhhhccCCCcccccccccccC-cchhhhhhHHHHHhHHHHHHhhcchhHHHHH
Q 011737 183 HKLSWLSTIAASMSFSYAGIGMGL-SFAKIVSGHGEKTTLTGVEIGLD-LTAADKTWRIFQAIGNMAFACSYAAILIEIQ 260 (478)
Q Consensus 183 ~~l~~~s~~~~~~~~~~~~i~~~~-~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~ 260 (478)
+..++++.++....+...++.+.. .+.....++..+.+....++.+. .+......+...++....|+|.|.+.+....
T Consensus 155 ~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 234 (496)
T PRK15238 155 NKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLV 234 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 666666655444333211111111 11111111111000000001000 0000111356677888999999999999999
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011737 261 DTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLG 295 (478)
Q Consensus 261 ~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~g 295 (478)
+|+||| +|+.+|++..+...+.++|.+..+..
T Consensus 235 ~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 235 DKTENP---EKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HhccCC---CccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 48999999999999999999765433
No 48
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.25 E-value=2.1e-08 Score=104.08 Aligned_cols=246 Identities=12% Similarity=0.012 Sum_probs=119.0
Q ss_pred cccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHhhc-CCcCccccccHHHHHHHhcc
Q 011737 33 TGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISL-YTSGLLAECYR-APNSVKRNYTYRDAVKNYLG 110 (478)
Q Consensus 33 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~-~t~~~l~~~~~-~~~~~~~~~sy~~l~~~~~G 110 (478)
|.+.+..++..+.+++ ++..+|.+ ++.|. ..++.+++.+++.. -......|... .+++| ...+.+++.+|
T Consensus 2 ~~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G----G~y~~~~~a~G 73 (474)
T TIGR03813 2 KLTVVTLAIMNITAVV--SLRGLPAE-AEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKG----GVFRWVGEAFG 73 (474)
T ss_pred cccHHHHHHHHHHHHH--HhhcchHH-HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----CceeeHhhhcC
Confidence 4566655555555555 44566766 56884 24444444444433 34445555322 22222 44455899999
Q ss_pred CcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCC-chhHhHHHH---HHHhhCCCCCCcch
Q 011737 111 GRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYN-PYMMALGIV---EILLSQIPNFHKLS 186 (478)
Q Consensus 111 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~---~~pl~~~~~l~~l~ 186 (478)
++.++...+..++........-+......+....... ...+ ..... +......++ .+-+.-.+.+|..+
T Consensus 74 ~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~ 146 (474)
T TIGR03813 74 ARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEA--TVDE-----SLAGNKLYVLVSVLFVYWLATFIALRGVAAFT 146 (474)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--ccCc-----ccccccHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 9999999888877664322111111222221111100 0000 11112 221111211 12223345555544
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcC
Q 011737 187 WLSTIAAS-MSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKS 265 (478)
Q Consensus 187 ~~s~~~~~-~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 265 (478)
.++..... ..+...++++...+.....+++.. .+.+|....++..+......+ ..+.|+|.|.+.+....+|+||
T Consensus 147 ~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~---~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~kn 222 (474)
T TIGR03813 147 KVAKWGGIVGTIIPAAILVILGISYLLTGGESQ---IPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDN 222 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccC
Confidence 55443221 111111112222222111111111 111111000111111222323 3467899999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 011737 266 SPPEQEVMKKANTIATFTATTLYLMCGCLGYAALG 300 (478)
Q Consensus 266 p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg 300 (478)
| +|+.+|++..+..++.++|.+..+.-....+
T Consensus 223 P---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 223 P---DKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred c---ccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9 4899999999999999999876655444443
No 49
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.22 E-value=5.5e-10 Score=115.54 Aligned_cols=378 Identities=12% Similarity=0.008 Sum_probs=223.1
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhh-hHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcCccccccHHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLS-LAWGLAQLGWIIGIATLVIFSGISLYTSGLLAEC-YRAPNSVKRNYTYRDAV 105 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~-lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~-~~~~~~~~~~~sy~~l~ 105 (478)
++.+|+.+.++..+.-+++++|+|++- ...+.++.|-..-++..++++...+.++..+.|- .+.+.. .-++...+
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~---aGs~~~ya 102 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS---AGSFYTYA 102 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc---cccceeee
Confidence 356889999999999999999999885 7888888886656677777888888888888884 333331 02444458
Q ss_pred HHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchh--HhHHHHHHHhhCCCCCC
Q 011737 106 KNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYM--MALGIVEILLSQIPNFH 183 (478)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~pl~~~~~l~ 183 (478)
++..|+-.++.+.+..+++....+.+-+...+.+++.+. . ....+...+ ..+...|. .+..++++.+...|-.-
T Consensus 103 ~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~-~--~~~~~~~~~-~~~~~~~~~~fla~~v~in~~gv~~~g 178 (554)
T KOG1286|consen 103 YRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWT-G--ASLIGILVD-TVNPGGWIPDFLAFILIINLFGVLAYG 178 (554)
T ss_pred eeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-c--ccccccccc-CCCCCccHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999999999999875 0 000000000 11112222 22233333344455544
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccc-cCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHh
Q 011737 184 KLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIG-LDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDT 262 (478)
Q Consensus 184 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 262 (478)
+.+.......+....-.++...+.+..+.++++.+. .-.-.|. +....+..+.+...++-+..|+|.|-+.+-..-+|
T Consensus 179 e~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~-ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E 257 (554)
T KOG1286|consen 179 EVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNW-IGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEE 257 (554)
T ss_pred ceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCC-cCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHh
Confidence 555444444443332111222222223333221111 0001111 00111122457789999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhh--cccCc-cccccccccc------cCCchhHHHHHHHHHHHHHHH
Q 011737 263 LKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYA--ALGNH-AQGNILTGFG------FYEPFWLIDLANFFIVVHLLG 333 (478)
Q Consensus 263 m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~--~fg~~-~~~~il~~~~------~~~~~~~~~~~~~~~~i~~~~ 333 (478)
-||| ||+.++++..++..++++|....+.--+ -|.+. ..++....-| .....++..+.+++.++.++.
T Consensus 258 ~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s 334 (554)
T KOG1286|consen 258 AKNP---RKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLS 334 (554)
T ss_pred ccCC---cccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHH
Confidence 9999 5899999999999999999977663322 22221 1111111111 112223334788888888887
Q ss_pred hhhhcccchHHHHHHHhhcc-CCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccc-----hHHHHH
Q 011737 334 AYQVLAQPVFGVVESWAGNR-WPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPF-----FNEVLA 407 (478)
Q Consensus 334 s~pl~~~p~~~~l~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-----~~~vi~ 407 (478)
+---.+++.-..+...-.+. .|+ +.++-...+.| +....+..++..+.+..... ++.+++
T Consensus 335 ~~n~~~y~~sR~l~amA~~G~~Pk--~f~~v~~~g~P------------~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~ 400 (554)
T KOG1286|consen 335 SLNSSLYAGSRVLYALAKDGLAPK--FFARVDRRGVP------------LVAVLVSGLFGALAALNFSLGAATVFNWLVN 400 (554)
T ss_pred HHHHHhHHhHHHHHHHHhcCCcch--HHhhcCCCCCc------------hhHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 77777777766666654322 111 11111001122 22233333344444443332 577788
Q ss_pred HHhhhhhhhHHhhhhHHHHHHHhcC
Q 011737 408 FLGAIAYWPMTVYFPMEMYIVRKEI 432 (478)
Q Consensus 408 l~Ga~~~~~l~fi~P~l~~~~~~~~ 432 (478)
+.|.- +++++.+=++.|++.|+.
T Consensus 401 ~~si~--tl~~w~~i~~~~i~~R~a 423 (554)
T KOG1286|consen 401 LSSIG--TLFAWTLVALSHLRFRYA 423 (554)
T ss_pred HHhHH--HHHHHHHHHHHHeeeeec
Confidence 77744 366666667777776643
No 50
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.21 E-value=2e-08 Score=104.71 Aligned_cols=237 Identities=12% Similarity=0.024 Sum_probs=120.2
Q ss_pred cccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHH--HHHHHHHhhcC-C-cCccccccHHHHHH
Q 011737 31 RRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLY--TSGLLAECYRA-P-NSVKRNYTYRDAVK 106 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~--t~~~l~~~~~~-~-~~~~~~~sy~~l~~ 106 (478)
++|.|.++.++..+.... ++..+| .+++.|+ +.+...+++.+.+. ......|.... + +.| ...+.++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G----G~y~wv~ 73 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG----GIFAWVS 73 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC----Ceeeehh
Confidence 466888887777777765 557888 5778883 44444555555433 55555664221 1 222 3334489
Q ss_pred HhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHH---HHhhCCCCCC
Q 011737 107 NYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVE---ILLSQIPNFH 183 (478)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~pl~~~~~l~ 183 (478)
+++|++.++...+..++................+..+.. .+.. . .+.++..+..+++ ..+...+..+
T Consensus 74 ~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~---~~~~------~-~~~~~~~i~~l~i~~~~t~~n~~G~k 143 (507)
T TIGR00910 74 NTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK---FPAL------N-EDPIIKFIAALIIFWALAFSQFGGTK 143 (507)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cchh------c-cCcHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999999988877776665543222222111111222211 0000 0 1112222222222 2222344444
Q ss_pred cchHHHHHHHHHH-HHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHh
Q 011737 184 KLSWLSTIAASMS-FSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDT 262 (478)
Q Consensus 184 ~l~~~s~~~~~~~-~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 262 (478)
....++.++.+.. +...++++...+.....+++..... ++++ ..+..+..+....+..+.|+|.|.+.....-+|
T Consensus 144 ~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~---~~~~-~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E 219 (507)
T TIGR00910 144 RTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEI---DSHA-FFPDFSKVGTLVVFVAFIGAYMGVEASASHINE 219 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCC---cHHh-cCCCcccccHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 4444443332211 1111112221111111111111000 0000 000001112334444568999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHhhhh
Q 011737 263 LKSSPPEQEVMKKANTIATFTATTLYLMCGC 293 (478)
Q Consensus 263 m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~ 293 (478)
+||| +|+++|++..++.++.++|.+..+
T Consensus 220 ~knP---~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 220 LENP---GRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred ccCC---cccccHHHHHHHHHHHHHHHHHHH
Confidence 9999 479999999999999999986544
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.94 E-value=7.9e-09 Score=107.41 Aligned_cols=286 Identities=13% Similarity=0.058 Sum_probs=161.0
Q ss_pred HHhhhhhhhHhh-hHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcceeehHHHH
Q 011737 43 IITAIVGSGVLS-LAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALGLVQ 121 (478)
Q Consensus 43 l~~~~iG~GiL~-lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~ 121 (478)
-+..++|+|++. .+.+..+.|....++..++.+++...++.-+.|..++- |. ..++.+.+++.+|+..+..+++..
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~-p~--~Gg~y~y~~~~lg~~~Gf~~gw~y 82 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRF-PS--AGGFYAYASRGLGPALGFAAGWAY 82 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhh-cc--ccchhhhhhhccCCcCCceeeHHH
Confidence 356889999774 88889999976567777888888888888888854432 21 236777799999999999999998
Q ss_pred HHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 011737 122 YTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFSYAG 201 (478)
Q Consensus 122 ~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 201 (478)
++.............+..++..-. .+..+. .+.+.. .+..+..+++. +......+..+.+...-....+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~-~~~~i~~~~~~-~l~~~gv~~~~~~~~~~~~i~~~~li 155 (478)
T PF00324_consen 83 WLSYIAAIAAEATAAGSFLQFWGY---FPGLPS--TWVWGI-LIAIIFILLIT-LLNLFGVRVSGKIEFILTIIKLIALI 155 (478)
T ss_pred HHHHHHHHHhhhhhhhhhhccccc---cccccc--cccccc-hhhhhhhhhhh-hhhhhhhhccchHHHHHHHHhhhHhh
Confidence 888877777777666665554310 111110 000000 11222222222 12223333333332222222221111
Q ss_pred HHHhhh-hhhhhccCCCcc-----ccc---ccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCCchHHH
Q 011737 202 IGMGLS-FAKIVSGHGEKT-----TLT---GVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQEV 272 (478)
Q Consensus 202 i~~~~~-i~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 272 (478)
..+... +.....+++.+. +.. ..+-+.+.+...+..++..++....++|.|-+.+...-+|.||| +|+
T Consensus 156 ~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~ 232 (478)
T PF00324_consen 156 AFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKT 232 (478)
T ss_pred hhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCc---hhh
Confidence 111111 111112121111 000 00000001112234578899999999999999999999999999 589
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccCccccc---------cccccccCCchhHHHHHHHHHHHHHHHhhhhcccc
Q 011737 273 MKKANTIATFTATTLYLMCGCLGYAALGNHAQGN---------ILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQP 341 (478)
Q Consensus 273 ~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~---------il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 341 (478)
.+|+...++....++|+......-...+.+.... ...........++..+.+++...+.+.+.--..+.
T Consensus 233 IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~ 310 (478)
T PF00324_consen 233 IPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYA 310 (478)
T ss_pred hhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcc
Confidence 9999999999999999987776555555433211 11111111234445566666666665554433333
No 52
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.92 E-value=9.9e-08 Score=93.79 Aligned_cols=236 Identities=13% Similarity=0.047 Sum_probs=152.1
Q ss_pred cccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCc
Q 011737 33 TGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGR 112 (478)
Q Consensus 33 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~ 112 (478)
|.|..|..+.+..+++|+|++.+|....+.+- .|++..++.+........+..+..++ .| ..+..|..++.+||+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~-~p---~~~l~~~~~~~~Gk~ 75 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKR-FP---GKTLVEISEKLFGKW 75 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHH-CC---CCCHHHHHHHHhCcH
Confidence 56889999999999999999999999776531 33344444444444555555554332 23 259999999999999
Q ss_pred ceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhH-hHHHHHHHhhCCCCCCcchHHHHH
Q 011737 113 KYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM-ALGIVEILLSQIPNFHKLSWLSTI 191 (478)
Q Consensus 113 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~pl~~~~~l~~l~~~s~~ 191 (478)
.++++.+...+..+......+...++.++... .+. .+.+.+ +..++.......+.++.+.+.+.+
T Consensus 76 lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~----lp~----------TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 76 LGKIINLLYILYFLLISALVLREFSEFIKTYL----LPE----------TPIWVIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCc----------CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999998888887777777777777666542 111 122222 222222223345666666664443
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCCchHH
Q 011737 192 AASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQE 271 (478)
Q Consensus 192 ~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 271 (478)
-....+...+++. .-..++...+ +..|. ...+..+...+.....+.|.+-....-+...+|+| +
T Consensus 142 ~~~~~~i~~~~i~----~~~~~~~~~~-~l~P~-------~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~ 205 (320)
T PF03845_consen 142 LFPIFLILLLLIL----LLSIPNIDWD-NLLPV-------LESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----K 205 (320)
T ss_pred HHHHHHHHHHHHH----HHhcccCCHH-HeeCc-------ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----h
Confidence 3333222111111 1111111111 11111 12333467777777888898888888899999988 8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccCcc
Q 011737 272 VMKKANTIATFTATTLYLMCGCLGYAALGNHA 303 (478)
Q Consensus 272 ~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~ 303 (478)
+.+|....+.....++|...-+.....||.+.
T Consensus 206 ~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 206 KLKKSLLIAILISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 89999999999999999988888888888753
No 53
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.60 E-value=3.1e-07 Score=80.18 Aligned_cols=216 Identities=14% Similarity=0.252 Sum_probs=131.4
Q ss_pred HHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhc------------CCc------------
Q 011737 38 TASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYR------------APN------------ 93 (478)
Q Consensus 38 ~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~------------~~~------------ 93 (478)
....-++|-++|+|.|+||.+|+.+||+.++.++.+.+.+++.+..++++++. +.+
T Consensus 16 vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd 95 (319)
T KOG3832|consen 16 VGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASD 95 (319)
T ss_pred hhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCC
Confidence 34566789999999999999999999999999999999999999999998630 000
Q ss_pred ---------------C-------c-------cccccHHHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHH
Q 011737 94 ---------------S-------V-------KRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAIS 144 (478)
Q Consensus 94 ---------------~-------~-------~~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~ 144 (478)
| | .+....+|++...|.|.+-.+..++++++++|-...|...+-...-++.
T Consensus 96 ~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~it 175 (319)
T KOG3832|consen 96 DDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNIT 175 (319)
T ss_pred CcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhh
Confidence 0 0 0124677888888999999999999999999999999877655544442
Q ss_pred hhhccc-cCC-CCCCcccc--------------CCchhHhHH-HHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 011737 145 KSNCYH-KEG-HKAPCKYS--------------YNPYMMALG-IVEILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLS 207 (478)
Q Consensus 145 ~~~~~~-~~~-~~~~~~~~--------------~~~~~~l~~-~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~ 207 (478)
-.-... .-+ ..++|.-+ .+.++.++. ++.+|+. .-++++-+.+..+...+-.. ..+...+
T Consensus 176 caa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpft-f~diqktk~iqiltslmrw~--~~~~g~~ 252 (319)
T KOG3832|consen 176 CAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFT-FADIQKTKHIQILTSLMRWA--AFILGIS 252 (319)
T ss_pred hhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCcee-EeccccchhHHHHHHHHHHH--hccchhh
Confidence 110000 001 11222211 112223332 2233443 23455555555444433221 1122222
Q ss_pred hhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcC
Q 011737 208 FAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKS 265 (478)
Q Consensus 208 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 265 (478)
......+ .+.. +.+++....-++-..++..+|+|.+|...|.....++.
T Consensus 253 l~tmqae--edaa-------~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~ 301 (319)
T KOG3832|consen 253 LATMQAE--EDAA-------AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQT 301 (319)
T ss_pred hhhhhhc--cccc-------ccCCccccccccccccchhhHHHHhhccCCCCCCCCee
Confidence 2211000 1110 12344444446667789999999999999988877764
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.53 E-value=4.5e-05 Score=72.30 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=94.9
Q ss_pred HHHHHHHHhhhhhhhHhhhHHH---HHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcc
Q 011737 37 WTASAHIITAIVGSGVLSLAWG---LAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRK 113 (478)
Q Consensus 37 ~~a~~~l~~~~iG~GiL~lP~a---f~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~ 113 (478)
.+-.+-.+.+++|+|.-+=-.. |..-|+. |....++.+++-..++..+.+..++-+ ..+|+|+-++.+||+.
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~----a~~y~~~~~~v~~~~~ 80 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN----ATSYREILKYVSGPKF 80 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc----ccchHHHHHHHhhHHH
Confidence 3456677789999998763333 4455654 666667778887788877777654433 3699999999999999
Q ss_pred eeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHH
Q 011737 114 YKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLST 190 (478)
Q Consensus 114 ~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~ 190 (478)
.++.|+.+.+..++.++.-+...++.+++..+. +...-.++..+.+..+.+.++.+.+-.+..
T Consensus 81 ~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--------------P~wiGali~i~~v~i~lfl~~vegi~tvn~ 143 (349)
T COG3949 81 AKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--------------PYWIGALIIILLVLILLFLGRVEGIITVNG 143 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--------------cHHHHHHHHHHHHHHHHHHhcccceeeehe
Confidence 999999999999999999999999888887431 111222333334444445666666655543
No 55
>PRK11375 allantoin permease; Provisional
Probab=98.50 E-value=0.0019 Score=66.98 Aligned_cols=239 Identities=10% Similarity=0.013 Sum_probs=121.1
Q ss_pred ccHHHHHHHhccCcceeehHHHHH-HHHhhhHHHHHHHHhhhHHHHHhhhcccc--CCCCCC-ccccCCchh--HhHHHH
Q 011737 99 YTYRDAVKNYLGGRKYKALGLVQY-TLLCGAMVGYTITASISMVAISKSNCYHK--EGHKAP-CKYSYNPYM--MALGIV 172 (478)
Q Consensus 99 ~sy~~l~~~~~G~~~~~~~~~~~~-~~~~g~~i~y~i~~~~~l~~i~~~~~~~~--~~~~~~-~~~~~~~~~--~l~~~~ 172 (478)
.++.-+.|..||++|.++..+... +..+|-...-....++.+..+++....+. .+++.+ ...+...++ +++.++
T Consensus 89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV 168 (484)
T ss_pred CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence 689999999999999998888875 56677777777778888887765432111 111100 001111111 123334
Q ss_pred HHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhh-
Q 011737 173 EILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACS- 251 (478)
Q Consensus 173 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~- 251 (478)
..+.. ....+.++++..++........+......+.+. .-++. ...++. + ..+.....+.+..++...+=++.
T Consensus 169 ~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~-g~~~~-~~~~~~--~-~~~~~~~~~~~~~~i~~vig~~~~ 242 (484)
T PRK11375 169 NVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV-GIGPI-FDYIPS--G-IQKAENSGFLFLVVINAVVAVWAA 242 (484)
T ss_pred HHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchh-hccCcc--c-ccCCcchHHHHHHHHHHHHHHHHH
Confidence 44443 455677777777776665443222222222222 10000 000000 0 00111122444455544433443
Q ss_pred cchhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhh----hhcccCccc--cccccccccCCchhHHHHHHH
Q 011737 252 YAAILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLG----YAALGNHAQ--GNILTGFGFYEPFWLIDLANF 325 (478)
Q Consensus 252 ~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~g----y~~fg~~~~--~~il~~~~~~~~~~~~~~~~~ 325 (478)
.-.+.|...+..|++ |+-.+...+++.+...+...+|+.. ...||+... .+++...+ +.....++.+
T Consensus 243 ~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~---~~~~~~~a~l 315 (484)
T PRK11375 243 PAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWD---SLFASFFAVL 315 (484)
T ss_pred HHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhc---chHHHHHHHH
Confidence 445889999999987 6666666666666665554444432 345655432 22333331 2223333444
Q ss_pred HHHHHHHHh-hhhcccchHHHHHHHh
Q 011737 326 FIVVHLLGA-YQVLAQPVFGVVESWA 350 (478)
Q Consensus 326 ~~~i~~~~s-~pl~~~p~~~~l~~~~ 350 (478)
.++++...+ ...+.++.-..+.+.+
T Consensus 316 ~~v~a~~~tN~~~N~ys~~~~l~~l~ 341 (484)
T PRK11375 316 VILMTTISTNATGNIIPAGYQIAALA 341 (484)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHhC
Confidence 445544444 2345566655555554
No 56
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.47 E-value=0.00011 Score=74.50 Aligned_cols=255 Identities=12% Similarity=0.048 Sum_probs=120.6
Q ss_pred cccccHHHH---HHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcCccccccHHHHHH
Q 011737 31 RRTGTVWTA---SAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAEC-YRAPNSVKRNYTYRDAVK 106 (478)
Q Consensus 31 ~~~~s~~~a---~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~-~~~~~~~~~~~sy~~l~~ 106 (478)
+|.-|.++. .|.+.+..-|. .-++.+.....|-...+-.+++.+.++.....-|.|. ...+..|. -|--.+
T Consensus 47 ~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGg---Ly~waa- 121 (550)
T KOG1289|consen 47 KREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGG---LYFWAA- 121 (550)
T ss_pred hhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCc---HHHHHH-
Confidence 565555433 34444333322 1246666766664433334566777777777777873 33333231 232222
Q ss_pred HhccCcceeehHH----HHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCC--C
Q 011737 107 NYLGGRKYKALGL----VQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQI--P 180 (478)
Q Consensus 107 ~~~G~~~~~~~~~----~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~--~ 180 (478)
..-+|+.+.++.+ ...+.+.....+-..-.++.+...... .|+ + ....+.....+..++.+.++++ .
T Consensus 122 ~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l--~np--~---y~~~~~~~~~v~~ai~~v~~lln~~ 194 (550)
T KOG1289|consen 122 VLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSL--TNP--N---YEPTNYHQFGVFEAILFVHGLLNSL 194 (550)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhh--cCC--C---CcccceEeehHHHHHHHHHHHHhcC
Confidence 3335554444444 333222211111111222222222221 111 1 1111222222222222222211 1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccccccccccc--Ccch-hhhhhHHHHHhHHHHHHhhcchhHH
Q 011737 181 NFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGL--DLTA-ADKTWRIFQAIGNMAFACSYAAILI 257 (478)
Q Consensus 181 ~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~faf~~~~~~~ 257 (478)
--+.+++++.+++...+...++.........-++++.+.... -|+. +.+. ..+-|.+..++-.-.+.+.|-+...
T Consensus 195 p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~--iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~ 272 (550)
T KOG1289|consen 195 PTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSF--IFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAA 272 (550)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCce--eeecccccCCCCcchHHHHHhhccceeEEeccCchH
Confidence 135677777777766665433333332222222212211000 0000 0011 1133567777777888899999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCc
Q 011737 258 EIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNH 302 (478)
Q Consensus 258 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~ 302 (478)
.+.+|-||+ +++.+|.+..+..+..++=..+-+.-...-+++
T Consensus 273 H~aEE~~nA---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 273 HMAEETKNA---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred HHHHHhcch---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999998 478999988888888777554444444455543
No 57
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.46 E-value=0.00023 Score=73.16 Aligned_cols=259 Identities=13% Similarity=0.063 Sum_probs=133.8
Q ss_pred CCCCCcccccHHHHHHHHHhhhhhhhHhhhHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcCccccccHH
Q 011737 26 DDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQ--LGWIIGIATLVIFSGISLYTSGLLAEC-YRAPNSVKRNYTYR 102 (478)
Q Consensus 26 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~--~G~~~g~~~l~~~~~~~~~t~~~l~~~-~~~~~~~~~~~sy~ 102 (478)
..++++|+.++++-+..-++..+...-+.+...... .++..+++..++-..+...-+.+.... .|. ..++.
T Consensus 6 pvp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~------Gl~~~ 79 (442)
T TIGR00800 6 PVKEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKY------GLPFP 79 (442)
T ss_pred CCCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHh------CCCcc
Confidence 334555665666555555555554444444433333 233344444333333333222222221 111 25777
Q ss_pred HHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCC
Q 011737 103 DAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNF 182 (478)
Q Consensus 103 ~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l 182 (478)
-+.|..||++|..+..++..+...|-...-....++.++.+++....+.......-........+++.++.+++......
T Consensus 80 v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~ 159 (442)
T TIGR00800 80 VLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGY 159 (442)
T ss_pred hhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHH
Confidence 88999999999999999999999999999999999999888765322100000000000111123334444554445444
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCC-c-ccccccccccCcchhhhhhHHHHHhHHHHHHh-hcchhHHHH
Q 011737 183 HKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGE-K-TTLTGVEIGLDLTAADKTWRIFQAIGNMAFAC-SYAAILIEI 259 (478)
Q Consensus 183 ~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i 259 (478)
+-.+.....+........ ...+....+.++. + ....+ ..+.....+.+..++...+=.+ ..-.+.+..
T Consensus 160 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~Dy 230 (442)
T TIGR00800 160 KIRHLFEWLAVVPPFAAF----GMLIWALSKAHGKGPLGELTG-----TLHGSTGAWAFLYALSLVIGSFATWATNAPDF 230 (442)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCCccccCCC-----CCCcchhHHHHHHHHHHHHHHHHHHHcCchhh
Confidence 444455555554433211 1111111111110 0 00000 0011223345555555533333 555689999
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----ccCcc
Q 011737 260 QDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAA----LGNHA 303 (478)
Q Consensus 260 ~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~----fg~~~ 303 (478)
.+.+|+| ++-.+....++....+....+|..+-.. +|+..
T Consensus 231 sRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 231 TRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred hhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 9999987 5555557777777777777777766654 76543
No 58
>PRK12488 acetate permease; Provisional
Probab=98.05 E-value=0.027 Score=59.60 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=93.3
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHHH-HHHHHHhhcCCcCccccccHHHHHHHh
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLYT-SGLLAECYRAPNSVKRNYTYRDAVKNY 108 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~t-~~~l~~~~~~~~~~~~~~sy~~l~~~~ 108 (478)
.|+.+++...+.+..+.++++ .++.|-.....|+- +... .+...+.+.- ..++.+-.|+. + ..|.+|.-++=
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~-~~g~~~g~~~~~~~~a~~lr~~--g--~~T~~d~l~~R 139 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLY-ALGVLAGWPIILFLIAERLRNL--G--KYTFADVVSYR 139 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHH-HHHHHHHHHHHHHHHHHHHHHC--C--CcchHHHHHHH
Confidence 577888999999999988888 45799877778863 2211 1111122211 22333323322 2 47999998888
Q ss_pred cc-CcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchH
Q 011737 109 LG-GRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSW 187 (478)
Q Consensus 109 ~G-~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~ 187 (478)
|| |+.|.+..+...+....-....+...+..++.+++ ++...-+++..++....+...-++...+
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVLYVTFGGMLATTW 205 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 87 55777777766666666666666677777776642 1222334455556666667888888888
Q ss_pred HHHHHHHHHHH
Q 011737 188 LSTIAASMSFS 198 (478)
Q Consensus 188 ~s~~~~~~~~~ 198 (478)
...+..+..+.
T Consensus 206 td~iQ~~im~~ 216 (549)
T PRK12488 206 VQIIKAVLLLS 216 (549)
T ss_pred HHHHHHHHHHH
Confidence 88887666554
No 59
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.04 E-value=0.0068 Score=61.12 Aligned_cols=226 Identities=12% Similarity=0.104 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCccee
Q 011737 36 VWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYK 115 (478)
Q Consensus 36 ~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~ 115 (478)
|....+++.+-..|+.... .++..+++..++-..+...-+.+....-.+. ..++.-++|..||++|..
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~-----Gl~~~v~sR~~FG~~Gs~ 74 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGADT-----GLSAMGSLKLSLGSKGSV 74 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CcCHHHHHHHHHccchhh
Confidence 4445555555566553321 4444444444433333333333333321111 258889999999999999
Q ss_pred ehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 011737 116 ALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASM 195 (478)
Q Consensus 116 ~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~~~~~~ 195 (478)
+..+...+...|--..-....++.++.+.+... +. .+...+..+.+++..+.+ ....+.++++..++...
T Consensus 75 ~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~----~~-----~~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~~~ 144 (386)
T TIGR02358 75 LPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF----GE-----ESPMLWILIVGILVTLWL-LSGPLAFVWLNNWSVWL 144 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC-----CchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999999988888888889999998875321 10 011122333333333333 34456677777777666
Q ss_pred HHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHH-hhcchhHHHHHHhhcCCCchHHHHH
Q 011737 196 SFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFA-CSYAAILIEIQDTLKSSPPEQEVMK 274 (478)
Q Consensus 196 ~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~p~~~~~~~~ 274 (478)
.....+......+.+. +. .....+ +.. ..+..++....-. -......++..+..|+| ++..
T Consensus 145 ~~i~~~~~~~~~~~~~---~~-~~~~~~-------~~~---~s~~~~~~~~~~~~~swa~~~~DysRy~k~~----~~~~ 206 (386)
T TIGR02358 145 LLIATLWLLVVVFSKA---DL-SELWNR-------AGD---MSFAVAVELVIAMPLSWLPLIADYTRFARNP----RHVF 206 (386)
T ss_pred HHHHHHHHHHHHHhcc---ch-hhhcCC-------CCC---ccHHHHHHHHHHHHHHHHHHccchhhhcCCC----ccee
Confidence 5442222222122211 11 100000 001 1222222222111 12334478888888876 7777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccC
Q 011737 275 KANTIATFTATTLYLMCGCLGYAALGN 301 (478)
Q Consensus 275 ~~~~~a~~~~~~lY~~~g~~gy~~fg~ 301 (478)
.....+..+...+-..+|.....+.++
T Consensus 207 ~~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 207 LGTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 778888888888888888877666654
No 60
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.00 E-value=0.0005 Score=69.98 Aligned_cols=150 Identities=10% Similarity=0.160 Sum_probs=86.1
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhc
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYL 109 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~ 109 (478)
.|+.+++...+.+..+.+|++ +++.|-...+.|+. +....+............+.+-.|+. +..|.+|+-++-+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~----~~~T~~e~~~~Ry 79 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRRS----GAVTIPEYLEKRY 79 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHT----T--SHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhccc----chhhhhhhhhhhc
Confidence 366778889999999888887 55788888888863 22222222222233333444434422 2479999999999
Q ss_pred cCcc--eeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchH
Q 011737 110 GGRK--YKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSW 187 (478)
Q Consensus 110 G~~~--~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~ 187 (478)
|++. +.+..+...+.........+...+..++.+++ ++....+++..++.+......-++...+
T Consensus 80 g~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~iYt~~GGl~av~~ 145 (406)
T PF00474_consen 80 GSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVIIYTFFGGLRAVAW 145 (406)
T ss_dssp -HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT------S
T ss_pred CCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHHHhhhhhhHhhhhH
Confidence 9988 55555555666666667777777777776643 2223344555566666778888888888
Q ss_pred HHHHHHHHHHHH
Q 011737 188 LSTIAASMSFSY 199 (478)
Q Consensus 188 ~s~~~~~~~~~~ 199 (478)
...+..+..+..
T Consensus 146 td~iQ~~i~~~~ 157 (406)
T PF00474_consen 146 TDFIQGVIMIIG 157 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877765543
No 61
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.98 E-value=0.031 Score=58.02 Aligned_cols=150 Identities=11% Similarity=0.085 Sum_probs=92.9
Q ss_pred cccccHHHHHHHHHhhhhhhhH-hhhHHHHHhhChHHHHHHHH--HHHHHHH-HHHHHHHHhhcCCcCccccccHHHHHH
Q 011737 31 RRTGTVWTASAHIITAIVGSGV-LSLAWGLAQLGWIIGIATLV--IFSGISL-YTSGLLAECYRAPNSVKRNYTYRDAVK 106 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~~~l~--~~~~~~~-~t~~~l~~~~~~~~~~~~~~sy~~l~~ 106 (478)
.|+.+++.....+..+.+|++. ++.|-...+.|+........ .++.+.. .-...+.+..|+. +..|.+|+-+
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~T~~e~l~ 114 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY----NAITINDVLK 114 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCccHHHHHH
Confidence 6778899999999999999884 46887777778532111110 1111111 1111222222322 2579999999
Q ss_pred HhccCcc-eeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcc
Q 011737 107 NYLGGRK-YKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKL 185 (478)
Q Consensus 107 ~~~G~~~-~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l 185 (478)
+-||++. +.+..+...+..++...+-+...+..++.+++ ++....+++..+++........++..
T Consensus 115 ~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG~~av 180 (471)
T TIGR02119 115 ARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLIYTTFGGFRAV 180 (471)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999664 56667777777766666667777777776643 22233344455556666678888888
Q ss_pred hHHHHHHHHHHHH
Q 011737 186 SWLSTIAASMSFS 198 (478)
Q Consensus 186 ~~~s~~~~~~~~~ 198 (478)
.++..+..+..+.
T Consensus 181 ~~td~iQ~~v~~~ 193 (471)
T TIGR02119 181 ALTDAIQGIVMFT 193 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877765554
No 62
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.92 E-value=0.041 Score=57.37 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=88.5
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHH--HHHHHHH-HHHHHHHHHhhcCCcCccccccHHHHHH
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATL--VIFSGIS-LYTSGLLAECYRAPNSVKRNYTYRDAVK 106 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l--~~~~~~~-~~t~~~l~~~~~~~~~~~~~~sy~~l~~ 106 (478)
.|+.+++...+.+..+.+|++ .++.|-..-+.|+....... .....+. .+-...+.+..|+. +..|.+|+-+
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~----~~~T~~e~l~ 115 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY----NAVTLNDMLR 115 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCccHHHHHH
Confidence 667788888888888888776 55788766667753111111 1111111 11222222222322 2579999999
Q ss_pred HhccCcc-eeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcc
Q 011737 107 NYLGGRK-YKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKL 185 (478)
Q Consensus 107 ~~~G~~~-~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l 185 (478)
+-||++. +.+..+...+..+......+...+..++.+++ ++....+++..++++..+....++..
T Consensus 116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GGl~av 181 (483)
T PRK09442 116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAFGGFRAV 181 (483)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 9998764 44445545555555555666677777776643 22233344555566667778888888
Q ss_pred hHHHHHHHHHHHH
Q 011737 186 SWLSTIAASMSFS 198 (478)
Q Consensus 186 ~~~s~~~~~~~~~ 198 (478)
.+...+..+..+.
T Consensus 182 ~~TD~iQ~~i~~~ 194 (483)
T PRK09442 182 VLTDALQGIVMLV 194 (483)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877666554
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.81 E-value=0.012 Score=59.84 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=95.9
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhc
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYL 109 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~ 109 (478)
.|+.+++...+.+..+.+|++ .++.|...-+.|+. +....+..........++..+..++. +..|.+|.-++-|
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~T~~e~l~~Ry 76 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINN----GAYTMPEYLEKRF 76 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc----CCCchhHHHHHHh
Confidence 366778888888888888877 55788877777853 32222222222233344444433321 2579999999999
Q ss_pred cCc-ceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHH
Q 011737 110 GGR-KYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWL 188 (478)
Q Consensus 110 G~~-~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~ 188 (478)
|++ .+.+..+...+..+......+...+..++.+++ ++....+++.++++........++...++
T Consensus 77 g~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~Yt~~GG~~av~~T 142 (407)
T TIGR00813 77 GKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITILYTVFGGLKAVVWT 142 (407)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHHHHHcchHHHHHH
Confidence 984 666666666777777777778888888877653 11223334445555556677888888888
Q ss_pred HHHHHHHHHH
Q 011737 189 STIAASMSFS 198 (478)
Q Consensus 189 s~~~~~~~~~ 198 (478)
..+..+.++.
T Consensus 143 d~iQ~~i~~~ 152 (407)
T TIGR00813 143 DTIQAVIMIL 152 (407)
T ss_pred HHHHHHHHHH
Confidence 8887766544
No 64
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.78 E-value=0.045 Score=57.07 Aligned_cols=150 Identities=11% Similarity=0.005 Sum_probs=98.7
Q ss_pred cccccHHHHHHHHHhhhhh-hhHhhhHHHHHhhChHHHHHHHH---HHHHHHHHHHHHHHHhhcCCcCccccccHHHHHH
Q 011737 31 RRTGTVWTASAHIITAIVG-SGVLSLAWGLAQLGWIIGIATLV---IFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVK 106 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~g~~~l~---~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~ 106 (478)
.|+.+.+-..+...-+..+ .-.+.+|-..-..|+....+... .......+....+.+..++ ++..|.+|.-+
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~----~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA----RGATTIPDFLE 112 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCccHHHHHH
Confidence 4444555666666666666 66889999999999653333322 2333333334444443322 22579999999
Q ss_pred Hhcc-CcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcc
Q 011737 107 NYLG-GRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKL 185 (478)
Q Consensus 107 ~~~G-~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l 185 (478)
+=|| +..|.+..+...+..+.-+..-++..++.++.... .+...-+++.+.++..-.....++..
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------------i~~~~~~~~~~~~v~~Yt~~gG~~av 178 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------------ISYVTGILIGALIVALYTFLGGLRAV 178 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------------CCHHHHHHHHHHHHHHHHHHcChhHH
Confidence 9999 88999999999999999999999989988855432 11222334445556666677778888
Q ss_pred hHHHHHHHHHHHH
Q 011737 186 SWLSTIAASMSFS 198 (478)
Q Consensus 186 ~~~s~~~~~~~~~ 198 (478)
.++..+-......
T Consensus 179 ~~Td~iqg~im~i 191 (493)
T COG0591 179 VWTDFIQGLIMLI 191 (493)
T ss_pred HHHHHHHHHHHHH
Confidence 8887776665543
No 65
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.72 E-value=0.034 Score=56.10 Aligned_cols=265 Identities=15% Similarity=0.106 Sum_probs=133.4
Q ss_pred HHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCC
Q 011737 103 DAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNF 182 (478)
Q Consensus 103 ~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l 182 (478)
.++|..||.++.++..+.+.+.+.|-...-.+..++.... .+ ..+...+.++.+++....... -.
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~------~~--------~~~~~~~ili~g~l~~l~~if-G~ 149 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS------GT--------GLPVWAGILIIGVLMTLVTIF-GY 149 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc------CC--------CCcHHHHHHHHHHHHHHHHHH-hH
Confidence 3477889999999999999999999999888888876211 11 222344455444444333222 23
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHh-hcchhHHHHHH
Q 011737 183 HKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFAC-SYAAILIEIQD 261 (478)
Q Consensus 183 ~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~ 261 (478)
+.++.++..++...+......+...+. . .+..+.. |. ..+.+..++..+++...-.+ ..-....+..+
T Consensus 150 r~l~~l~~~a~~~~~~lf~~l~~~~~~-~--~~~~~~~-----~~---~~~~~~~~fl~a~slv~g~~~sw~~~~aDysR 218 (442)
T COG1457 150 RALHKLERIAVPLLLLLFLYLLALLFR-S--KGGLDAL-----WV---KGPTSPLSFLSALSLVIGSFASWGPYAADYSR 218 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cccccee-----ec---cCCCcchhHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 344444444444433211111111111 0 1111110 00 00111123344444333333 44456788888
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcc-ccccccccccCCchhHHHHHHHHHHHHHHHhhhhccc
Q 011737 262 TLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHA-QGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQ 340 (478)
Q Consensus 262 ~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~ 340 (478)
.+|+|. . ++.-.....+......+-...|...-.+-|+.. ..++...++ . +...+-+.+++....+=-.+++
T Consensus 219 y~~~~t-~-~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G---~--~g~~~~lil~l~~~ttN~~nlY 291 (442)
T COG1457 219 YAPSPT-P-SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG---G--FGLPAILILVLGTVTTNANNLY 291 (442)
T ss_pred hcCCCc-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc---c--HHHHHHHHHHHHHHhcCcHHHH
Confidence 898871 1 356666666777777777778888877777765 334444443 1 2344444444444444444444
Q ss_pred chHHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHH----HccchHHHHHHHhhhhhhh
Q 011737 341 PVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISM----AFPFFNEVLAFLGAIAYWP 416 (478)
Q Consensus 341 p~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~----~~p~~~~vi~l~Ga~~~~~ 416 (478)
+.--.+.+...+ ++ +..+.....+. ...++|+ +..+++..+.++|+.....
T Consensus 292 sa~ls~~~i~~~---------------l~--------k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~ 346 (442)
T COG1457 292 SAGLSFANIIPK---------------LS--------KVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPW 346 (442)
T ss_pred HHHHHHHHhhhh---------------hh--------hHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333332211 01 12233322221 2222222 4667888888888777554
Q ss_pred HHhhhhHHH
Q 011737 417 MTVYFPMEM 425 (478)
Q Consensus 417 l~fi~P~l~ 425 (478)
....+=-.+
T Consensus 347 ~~I~iad~~ 355 (442)
T COG1457 347 GGVMIADYF 355 (442)
T ss_pred HHHHHHHHH
Confidence 444443333
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=97.70 E-value=0.033 Score=56.57 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=87.9
Q ss_pred ccHHHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhC
Q 011737 99 YTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQ 178 (478)
Q Consensus 99 ~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~ 178 (478)
.++.-++|..||.+|.++..+...+...|-...-....++.++.+.+. +.....++..++..+...
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~--------------~~~~~~~i~~~l~~~~~~ 136 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL--------------DINLLIVLSGLLMTVTAY 136 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHH
Confidence 689999999999999999888887777766666666666655554321 111233344444444333
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHh-hcchhHH
Q 011737 179 IPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFAC-SYAAILI 257 (478)
Q Consensus 179 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~ 257 (478)
.+ .+.++++...+........+..+...+. +.++... .... ++ .....+..++...+=.+ ..-.+.+
T Consensus 137 ~G-~~~i~~~~~~~~p~~~~~~~~~~~~~~~---~~~g~~~-~~~~------~~-~~~~~~~~a~~~~~g~~~~~~~~~~ 204 (404)
T PRK11017 137 FG-ISALTILSRIAVPAIALLGGYSVWLAVN---DVGGLDG-LKAI------VP-AEPLDFSAALTLVVGSFISGGTLTA 204 (404)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCchhh-hhcC------CC-CCcccHHHHHHHHHHHHHHhHhcCC
Confidence 22 3445555555444433211111111111 1111110 0000 00 00123333443332222 4456788
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 011737 258 EIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGN 301 (478)
Q Consensus 258 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~ 301 (478)
+..+..|+| |+.......+..+...+-..+|...-...|+
T Consensus 205 DysRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 205 DFVRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred ChHhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888888876 5544555566656666555666555555554
No 67
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.57 E-value=0.11 Score=52.03 Aligned_cols=73 Identities=10% Similarity=-0.015 Sum_probs=45.5
Q ss_pred HHHhhhhhhhHhhhHHHHH-hhC--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcceeehH
Q 011737 42 HIITAIVGSGVLSLAWGLA-QLG--WIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALG 118 (478)
Q Consensus 42 ~l~~~~iG~GiL~lP~af~-~~G--~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~ 118 (478)
.+..-.+|+|.|-.|-... ++| |..+.+.+++.++..-..... ...+ . | .+|+++. +..||+...+..
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~--av~~-~--g---G~~~~l~-~~~g~~f~~lf~ 73 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI--ALAL-V--G---GGYDSLS-ARIGKVFGILFT 73 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh--eeee-c--C---CCHHHHH-HHhChHHHHHHH
Confidence 4566779999998887765 566 566676666666655544433 1111 1 1 2788887 556777766666
Q ss_pred HHHHH
Q 011737 119 LVQYT 123 (478)
Q Consensus 119 ~~~~~ 123 (478)
+.+.+
T Consensus 74 ~~~~l 78 (378)
T TIGR00796 74 VILYL 78 (378)
T ss_pred HHHHH
Confidence 55543
No 68
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.47 E-value=0.21 Score=52.89 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=86.5
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHhhcCCcCccccccHHHHHHHh
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISL-YTSGLLAECYRAPNSVKRNYTYRDAVKNY 108 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~sy~~l~~~~ 108 (478)
.|+.+++...+.+..+.+++. .+..|-...+.|+- +....+ ...+.+ ....++.+-.|+. + ..|.+|.-++=
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr~--g--~~T~~d~l~~R 139 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRNL--G--RYTFADVASYR 139 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHHc--C--CccHHHHHHHH
Confidence 566777888888888877765 66888777777853 222211 111111 1223333323322 2 47999998877
Q ss_pred ccC-cceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchH
Q 011737 109 LGG-RKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSW 187 (478)
Q Consensus 109 ~G~-~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~ 187 (478)
||. ..|.+..+...+....-....+...+..++.+++ ++...-+++..+++..-....-++...+
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVMYVLFGGMLATTW 205 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 874 4566655555555555555556666777766643 1122224445555555667777777788
Q ss_pred HHHHHHHHHHH
Q 011737 188 LSTIAASMSFS 198 (478)
Q Consensus 188 ~s~~~~~~~~~ 198 (478)
...+..+..+.
T Consensus 206 td~iQ~~im~~ 216 (549)
T TIGR02711 206 VQIIKAVLLLF 216 (549)
T ss_pred HHHHHHHHHHH
Confidence 87777665543
No 69
>PRK09395 actP acetate permease; Provisional
Probab=97.38 E-value=0.27 Score=52.17 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=87.8
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHhhcCCcCccccccHHHHHHHh
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISL-YTSGLLAECYRAPNSVKRNYTYRDAVKNY 108 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~sy~~l~~~~ 108 (478)
.|+.+++...+.+..+.++++ .++.|-..-..|+. +... .+...+.+ ....++.+-.|+. + ..|++|.-++=
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~-~~~~~~g~~~~~~~~~~~~r~~--g--~~T~~d~l~~R 141 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIY-SIGFLVGWPIILFLIAERLRNL--G--KYTFADVASYR 141 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHH-HHHHHHHHHHHHHHHHHHHhhC--C--CccHHHHHHHH
Confidence 567778888888888888877 55788777777863 2211 11111211 1122333323322 2 47999998888
Q ss_pred ccC-cceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchH
Q 011737 109 LGG-RKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSW 187 (478)
Q Consensus 109 ~G~-~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~ 187 (478)
||+ +.|.+..+...+..+.-....+...+..++.+++ ++...-+++..++++..+...-++...+
T Consensus 142 ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~av~~ 207 (551)
T PRK09395 142 LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLATTW 207 (551)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 884 4666666655555444445555566666666542 2223334455556666667777888777
Q ss_pred HHHHHHHHHHH
Q 011737 188 LSTIAASMSFS 198 (478)
Q Consensus 188 ~s~~~~~~~~~ 198 (478)
...+..+.++.
T Consensus 208 TD~iQ~iim~~ 218 (551)
T PRK09395 208 VQIIKAVLLLS 218 (551)
T ss_pred HHHHHHHHHHH
Confidence 77777655443
No 70
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.33 E-value=0.27 Score=51.26 Aligned_cols=153 Identities=10% Similarity=0.072 Sum_probs=81.1
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcC-ccccccHHHHHHHh
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNS-VKRNYTYRDAVKNY 108 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~-~~~~~sy~~l~~~~ 108 (478)
.|+.+++...+.+..+.+++. .++.|-..-..|+.. .................+.+-.|...+ ..+..|.+|.-++=
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENR 113 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHH
Confidence 577788888888888877766 456886666678642 211111111112222333322121100 11257999999999
Q ss_pred ccCcceee---hHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcc
Q 011737 109 LGGRKYKA---LGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKL 185 (478)
Q Consensus 109 ~G~~~~~~---~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l 185 (478)
||++.+.+ ..+...+....-...-+...+..++.+++ ++....+++..++...-....-++..
T Consensus 114 yg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGl~av 179 (487)
T TIGR02121 114 FNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALIIVIYTFFGGFLAV 179 (487)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99755443 22223322323333334455556665532 11223334445555556667777787
Q ss_pred hHHHHHHHHHHHH
Q 011737 186 SWLSTIAASMSFS 198 (478)
Q Consensus 186 ~~~s~~~~~~~~~ 198 (478)
.+...+..+..+.
T Consensus 180 ~~TD~iQ~~i~~~ 192 (487)
T TIGR02121 180 SWTDFVQGLLMFF 192 (487)
T ss_pred HHHHHHHHHHHHH
Confidence 7877777665543
No 71
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.18 E-value=0.34 Score=49.31 Aligned_cols=201 Identities=11% Similarity=0.065 Sum_probs=99.9
Q ss_pred cccHHHHHHHhccCcceeehHHH---HHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCC-CccccCCchhHhHHHH-
Q 011737 98 NYTYRDAVKNYLGGRKYKALGLV---QYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKA-PCKYSYNPYMMALGIV- 172 (478)
Q Consensus 98 ~~sy~~l~~~~~G~~~~~~~~~~---~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~- 172 (478)
..+|+.+.|..||-++..+-.+. ..+..+|.- .-..+..++-++.....+..-... .....-.....+..++
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvq---ty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~if 178 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQ---TYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIF 178 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHH
Confidence 47999999999998876654332 222222222 234455555555544332111010 0011111111222221
Q ss_pred --HHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCC--cccccccccccCcchhhhhhHHHHHhHHHHH
Q 011737 173 --EILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGE--KTTLTGVEIGLDLTAADKTWRIFQAIGNMAF 248 (478)
Q Consensus 173 --~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 248 (478)
+-.+...+.++++|++-..+..++...++-++..... +.++. -.+.+.. ........|.+..++...+=
T Consensus 179 W~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~---~a~g~~~~~~~p~~----~~~~~~~~w~~~~~~~~~v~ 251 (497)
T COG1953 179 WVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALV---KAGGSSILGELPAG----TVSGSNSSWAFLAGIAAWVG 251 (497)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHH---hcCCcCccccCCCC----CCCcchhHHHHHHHHHHHHH
Confidence 1223356778888888777777665533332222222 22221 1111100 11222333444444433333
Q ss_pred Hh-hcchhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhh----hhhhcccCcc--ccccccccc
Q 011737 249 AC-SYAAILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGC----LGYAALGNHA--QGNILTGFG 312 (478)
Q Consensus 249 af-~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~----~gy~~fg~~~--~~~il~~~~ 312 (478)
.| ...-|+|..-+.-|+| +.-.+--.++..+.+.+..++|+ .++..||+.. +.+|...++
T Consensus 252 ~~Atl~lN~~DFsRfa~s~----~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 252 FWATLALNIPDFTRFAKSQ----KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred HHHHHhcCCchhhcccCCh----hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 33 4567889998888886 44444445556666655555554 5678899985 457778775
No 72
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.10 E-value=0.0059 Score=62.81 Aligned_cols=113 Identities=14% Similarity=0.022 Sum_probs=65.5
Q ss_pred CCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhh--ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHH
Q 011737 29 RSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQL--GWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVK 106 (478)
Q Consensus 29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~--G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~ 106 (478)
+++|+.+.++.+..-.+..+....+.+....... ++..+++..++-.++...-..+....-.+. -.++..++|
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~-----Gl~~~v~sR 78 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRT-----GLPTMVLSR 78 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC--------HHHHTT
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccccc-----CCCchhcch
Confidence 4566666666666555555555555444443333 333444444433333333333332211111 257888899
Q ss_pred HhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhh
Q 011737 107 NYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKS 146 (478)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 146 (478)
..||.+|..+..+...+...|-...-....++.+..+++.
T Consensus 79 ~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~ 118 (440)
T PF02133_consen 79 ASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGI 118 (440)
T ss_dssp TTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998899999999998764
No 73
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.06 E-value=0.011 Score=57.67 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=81.6
Q ss_pred cHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcce
Q 011737 35 TVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKY 114 (478)
Q Consensus 35 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~ 114 (478)
+.+...-+=..++-|+|-+.=|-.-.+-||+++.++.++-.++..-......-...-++.| +|.+|++++..||+++
T Consensus 53 ~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G---~Si~~i~~~~lG~~~~ 129 (376)
T PF02554_consen 53 NKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKG---KSIGEIAGKYLGKRAK 129 (376)
T ss_pred chHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCC---ccHHHHHHHHHHHHHH
Confidence 3456777888899999999989888999999999888766555555544444322222223 5999999999999999
Q ss_pred eehHHHHHHHHhhhHHHHHHHHhhhHHH
Q 011737 115 KALGLVQYTLLCGAMVGYTITASISMVA 142 (478)
Q Consensus 115 ~~~~~~~~~~~~g~~i~y~i~~~~~l~~ 142 (478)
.+..+..++.+.....++.....+.+..
T Consensus 130 ~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 130 KLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998888888877776653
No 74
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.04 E-value=0.56 Score=49.16 Aligned_cols=152 Identities=15% Similarity=0.079 Sum_probs=83.9
Q ss_pred cccccHHHHHHHHHhhhhhhhH-hhhHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHHHhhcCC-cCccccccHHHHHHH
Q 011737 31 RRTGTVWTASAHIITAIVGSGV-LSLAWGLAQLGWIIGIATLVIFSGIS-LYTSGLLAECYRAP-NSVKRNYTYRDAVKN 107 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~~~l~~~~~~~-~~t~~~l~~~~~~~-~~~~~~~sy~~l~~~ 107 (478)
.|+.+++...+.+..+.+++.. ++.|-..-+.|+.. . ...+...+. .....++..-.+.. +...+..|.+|.-++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 6778889899999888888885 46888877888642 1 111111111 11112222111100 001124799999988
Q ss_pred hccCcceee---hHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCc
Q 011737 108 YLGGRKYKA---LGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHK 184 (478)
Q Consensus 108 ~~G~~~~~~---~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~ 184 (478)
=||++.+.+ ..+...+....-+..-+...+..++.+++ ++....+++.+++++.-....-++.
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GGl~a 182 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFIGGFLA 182 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 898754332 33333333333333334445566655532 2222334455566666677888888
Q ss_pred chHHHHHHHHHHHH
Q 011737 185 LSWLSTIAASMSFS 198 (478)
Q Consensus 185 l~~~s~~~~~~~~~ 198 (478)
..+.-.+..+.++.
T Consensus 183 V~~TD~iQ~~imi~ 196 (502)
T PRK15419 183 VSWTDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877766544
No 75
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.88 E-value=0.81 Score=48.58 Aligned_cols=148 Identities=13% Similarity=0.109 Sum_probs=88.3
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhc
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYL 109 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~ 109 (478)
.|+.+++...+.+..+.++++ .++.|-.....|+- +................++.+-.|+. + ..|.+|.-++=|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~--~--~~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKF--G--KYTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHC--C--CccHHHHHHHHh
Confidence 677889999999998988776 56788776677753 21111111111112233444434432 2 468999888888
Q ss_pred cCc-ceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHH
Q 011737 110 GGR-KYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWL 188 (478)
Q Consensus 110 G~~-~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~ 188 (478)
|++ .+.+..+...+....-....+...+..++.+++ ++...-+++..++...-+...-++...+.
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~i~~iYt~~GG~~aV~~T 171 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFIGMAIVFFYAVLGGMKGVTWT 171 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 865 566655566555655555666666777766643 11223334445555556667778888777
Q ss_pred HHHHHHHHH
Q 011737 189 STIAASMSF 197 (478)
Q Consensus 189 s~~~~~~~~ 197 (478)
-.+..+..+
T Consensus 172 D~iQ~iim~ 180 (552)
T TIGR03648 172 QVAQYIVLI 180 (552)
T ss_pred HHHHHHHHH
Confidence 777655443
No 76
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.88 E-value=0.61 Score=47.08 Aligned_cols=224 Identities=15% Similarity=0.078 Sum_probs=118.8
Q ss_pred hHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHH--HHHHhhcCCcCccccccHHHH-HHHhccCcceeehHHHHHHHHhh
Q 011737 51 GVLSLAWGLAQLGWIIGIATLVIFSGISLYTSG--LLAECYRAPNSVKRNYTYRDA-VKNYLGGRKYKALGLVQYTLLCG 127 (478)
Q Consensus 51 GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~--~l~~~~~~~~~~~~~~sy~~l-~~~~~G~~~~~~~~~~~~~~~~g 127 (478)
..|.++-...-.|+= |.+.. ++....|... ++.+-+|+- | .+|++|+ ++|.--++.|.+..+.-.+-.+.
T Consensus 61 SflGiag~I~~~GYd-G~~Y~--iG~~~Gy~i~~fL~A~~LRk~--G--kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~ 133 (529)
T COG4147 61 SFLGIAGLIFISGYD-GLIYS--IGWTGGYPILLFLIAEYLRKL--G--KYTFADFIADRYKSNPARLLAAIGTIIVSFL 133 (529)
T ss_pred hhhchhHhhhhcccc-hHHHH--HHHHHHHHHHHHHHHHHHHhc--C--CcchHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 455566555556642 33322 2333333322 333334543 3 4799998 45555567888777766666666
Q ss_pred hHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 011737 128 AMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLS 207 (478)
Q Consensus 128 ~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~ 207 (478)
-.++.++-.+..+..+++ ++...-+++..+++........++...|....--+..+.-..+.....
T Consensus 134 YliaQmvGaG~li~~l~g--------------v~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i 199 (529)
T COG4147 134 YLIAQMVGAGLLISLLLG--------------VPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMI 199 (529)
T ss_pred HHHHHHHhhHHHHHHHhC--------------CCceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778887777754 223344455566666666788888888887766655443222222222
Q ss_pred hhhh-hccCCC---cccccccc-cccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhh-cCCCchHHHHHHHHHHHH
Q 011737 208 FAKI-VSGHGE---KTTLTGVE-IGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTL-KSSPPEQEVMKKANTIAT 281 (478)
Q Consensus 208 i~~~-~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m-~~p~~~~~~~~~~~~~a~ 281 (478)
..+. ....+. -...++.+ ++...++.....+-...++...--..|..-+|.+.-.- .- ++-|+-++.+.++.
T Consensus 200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTv--p~~k~AR~Sv~wA~ 277 (529)
T COG4147 200 MWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTV--PDAKEARKSVFWAT 277 (529)
T ss_pred HHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEec--CcHHHHHHHHHHHH
Confidence 2221 111110 00001000 00001111111233344444333345556666664322 22 36688999999999
Q ss_pred HHHHHHHHhhhhhhhh
Q 011737 282 FTATTLYLMCGCLGYA 297 (478)
Q Consensus 282 ~~~~~lY~~~g~~gy~ 297 (478)
.+...+|+..-..|+.
T Consensus 278 ~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 278 GFIGIFYILTPIIGAG 293 (529)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999987776665
No 77
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.75 E-value=0.78 Score=46.49 Aligned_cols=85 Identities=18% Similarity=0.104 Sum_probs=54.0
Q ss_pred ccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHHHH---HHHHHhhcCCcCccccccH-----H
Q 011737 32 RTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLYTS---GLLAECYRAPNSVKRNYTY-----R 102 (478)
Q Consensus 32 ~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~t~---~~l~~~~~~~~~~~~~~sy-----~ 102 (478)
++.|.+|+.+..+.+.+|+| ++.+|.+.+..| ..+++++-+.+++..-+. ..|..-+|+.++ ..+| .
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~---~g~~~GGP~y 120 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA---DGVFRGGPMY 120 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC---CCCEecChHH
Confidence 45899999999999999998 999999987776 345444444433333332 222222332221 1235 6
Q ss_pred HHHHHhccCcceeehHHH
Q 011737 103 DAVKNYLGGRKYKALGLV 120 (478)
Q Consensus 103 ~l~~~~~G~~~~~~~~~~ 120 (478)
.+-+...|||...+..+.
T Consensus 121 yi~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 121 YIKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHHhCccHHHHHHHHH
Confidence 777777788765555555
No 78
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.29 E-value=1.5 Score=44.28 Aligned_cols=236 Identities=13% Similarity=0.045 Sum_probs=116.2
Q ss_pred cHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHHHHHhccCc
Q 011737 35 TVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDAVKNYLGGR 112 (478)
Q Consensus 35 s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l~~~~~G~~ 112 (478)
|-.+-+...+++.+|-| +.-.||-..+-|- .+.++.-++..+..=--.++.|-. .+...+....+|+++.. ++
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGG-gAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~----~~ 84 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGG-GAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP----KK 84 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCc-chHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc----Cc
Confidence 44566778899999999 7889999887662 123333333333333334444421 11111111346666654 34
Q ss_pred ceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCC-CCC------ccccCCchhHh---HHHHHHHhhCCCCC
Q 011737 113 KYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGH-KAP------CKYSYNPYMMA---LGIVEILLSQIPNF 182 (478)
Q Consensus 113 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~-~~~------~~~~~~~~~~l---~~~~~~pl~~~~~l 182 (478)
....+++......+..+.-|.++.+=.+..+...... ..++ .+. ...++....+. ...++.-+..-|.+
T Consensus 85 ~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV 163 (439)
T COG0733 85 KWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTG-ALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGV 163 (439)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhH
Confidence 4455566666677777777777777666666544221 1110 000 00111211111 11112222233444
Q ss_pred Cc-chHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccccccccc--ccCcchhhhhhHHHHHhHHHHHHh-hcchhHHH
Q 011737 183 HK-LSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEI--GLDLTAADKTWRIFQAIGNMAFAC-SYAAILIE 258 (478)
Q Consensus 183 ~~-l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~ 258 (478)
++ +.+.|.+.+-..+...++++ ++....++. .++.++ .||.....+......++|...|+- .|-..+.+
T Consensus 164 ~~GIEk~~kimMP~Lfvl~i~Lv---i~~~tLpGA----~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mit 236 (439)
T COG0733 164 KKGIEKANKIMMPLLFVLFIILV---IRAVTLPGA----MEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMIT 236 (439)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH---HHHHcCccH----HHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33 77777777766554322232 332222221 122221 223333333334568889888888 45555666
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHH
Q 011737 259 IQDTLKSSPPEQEVMKKANTIATFTATTL 287 (478)
Q Consensus 259 i~~~m~~p~~~~~~~~~~~~~a~~~~~~l 287 (478)
.-+.+++. +|..+........-+..
T Consensus 237 YsSYL~k~----~~l~~sa~~v~~~n~~~ 261 (439)
T COG0733 237 YSSYLSKK----SDLVSSALSIVLLNTLI 261 (439)
T ss_pred HHhhcCcc----cchhhhHHHHHHHHHHH
Confidence 66667765 77777644444433333
No 79
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=96.14 E-value=1.8 Score=43.82 Aligned_cols=106 Identities=11% Similarity=0.035 Sum_probs=63.6
Q ss_pred ccccHHHHHHHHHhhhhhhhHhhhHHHH-HhhChHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcCccccccHHHHHHHhc
Q 011737 32 RTGTVWTASAHIITAIVGSGVLSLAWGL-AQLGWIIGIATLVIFSGISLYTSGLLAE-CYRAPNSVKRNYTYRDAVKNYL 109 (478)
Q Consensus 32 ~~~s~~~a~~~l~~~~iG~GiL~lP~af-~~~G~~~g~~~l~~~~~~~~~t~~~l~~-~~~~~~~~~~~~sy~~l~~~~~ 109 (478)
+..+..+..+....+-+|.|=++--..+ ++-|+- .+..++...+..+-.+.+.. .-..+ | ++..|..++-+
T Consensus 15 ~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~--ll~vills~l~~~~~Q~~~arLgivT--G---~~laq~ir~~y 87 (416)
T COG1914 15 KLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYS--LLWVILLSNLMAYILQELSARLGIVT--G---KGLAEAIRERY 87 (416)
T ss_pred HHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh--C---CcHHHHHHHHc
Confidence 3345556667777777777766543333 345543 33333333333333332222 10111 2 47888888999
Q ss_pred cCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHH
Q 011737 110 GGRKYKALGLVQYTLLCGAMVGYTITASISMVAIS 144 (478)
Q Consensus 110 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~ 144 (478)
+|+..++.-+...+....++++=.+..+--++-+.
T Consensus 88 ~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 88 LPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998888888888888888888777777776553
No 80
>PRK15015 carbon starvation protein A; Provisional
Probab=95.96 E-value=0.36 Score=50.67 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=76.5
Q ss_pred HHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcceeeh
Q 011737 38 TASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKAL 117 (478)
Q Consensus 38 ~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~ 117 (478)
-.+-+=+.++-|+|-+-=|....+-||.++.++.++-.++..--..+..--...++.| +|.+|++++..|++++.+.
T Consensus 87 VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~G---rSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 87 VLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDG---RSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred chhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCC---ccHHHHHHHHhhHHHHHHH
Confidence 4566778899999999999999999999999988765555544444443322222223 5999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhHH
Q 011737 118 GLVQYTLLCGAMVGYTITASISMV 141 (478)
Q Consensus 118 ~~~~~~~~~g~~i~y~i~~~~~l~ 141 (478)
.+.+++.......++...+.+.+.
T Consensus 164 li~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 164 LVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888887777777777766653
No 81
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=95.94 E-value=1 Score=47.78 Aligned_cols=107 Identities=20% Similarity=0.160 Sum_probs=73.1
Q ss_pred ccccHHHHHHHHHhhhhhhhHh-hhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cCccccccHHHHHHHhc
Q 011737 32 RTGTVWTASAHIITAIVGSGVL-SLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAP-NSVKRNYTYRDAVKNYL 109 (478)
Q Consensus 32 ~~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~-~~~~~~~sy~~l~~~~~ 109 (478)
|-+++.+...-.+-.+.|.=++ -|-|.+..+|...+.++.++|...+..|+.-+....-+. .|. -.+|-=+. +.+
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpa--GGsYfmIS-RsL 189 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPA--GGSYFMIS-RSL 189 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC--CCeeEEEe-ccc
Confidence 3344444445555556665433 488888899999999998888888888877776642211 121 12565444 678
Q ss_pred cCcceeehHHHHHHHHhhhHHHHHHHHhhhHH
Q 011737 110 GGRKYKALGLVQYTLLCGAMVGYTITASISMV 141 (478)
Q Consensus 110 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~ 141 (478)
||-.+-.++++.++....+...|++..-+.+-
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L 221 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIFL 221 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHHH
Confidence 89888889999999888888889886655443
No 82
>PRK10484 putative transporter; Provisional
Probab=95.82 E-value=3.1 Score=43.87 Aligned_cols=154 Identities=11% Similarity=0.083 Sum_probs=79.8
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHhhcCCcCccccccHHHHHHHh
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISL-YTSGLLAECYRAPNSVKRNYTYRDAVKNY 108 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~sy~~l~~~~ 108 (478)
.|+.+++-..+.+..+.++++ .++.|-..-+.|+.. ..... .+.+.. .....+..-.++. +..|.+|+-++-
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~-~~~~~-~~~~~~~~~~~~~~p~~~r~----~~~T~~e~l~~R 110 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSV-MAWEV-TAAIALIILALIFLPRYLKS----GITTIPDFLEER 110 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHH-HHHHH-HHHHHHHHHHHHHHHHHHhc----CCccHHHHHHHh
Confidence 677888888888888888777 456887766678532 11111 111111 2222333322221 257999999999
Q ss_pred ccCcceeehHHHHHHHHhhhHHHH-HHHHhhhHHHHHhhhccccCCCCCCccccCCchhH----hHHHHHHHhhCCCCCC
Q 011737 109 LGGRKYKALGLVQYTLLCGAMVGY-TITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM----ALGIVEILLSQIPNFH 183 (478)
Q Consensus 109 ~G~~~~~~~~~~~~~~~~g~~i~y-~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~pl~~~~~l~ 183 (478)
||++.+.+......+......... +...+..++.+... .... .++....+. +.+++...-+...-++
T Consensus 111 yg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~--~~~~------gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~ 182 (523)
T PRK10484 111 YDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHV--SELL------GISYGAAIWLLVWLIGIIGAIYAVFGGLK 182 (523)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhc------CCcHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 999877766554443333322222 22223333333211 0000 111111111 1233344555677777
Q ss_pred cchHHHHHHHHHHHH
Q 011737 184 KLSWLSTIAASMSFS 198 (478)
Q Consensus 184 ~l~~~s~~~~~~~~~ 198 (478)
...++-.+..+..+.
T Consensus 183 aV~~TD~iQ~vim~i 197 (523)
T PRK10484 183 AVAVSDTINGIGLLI 197 (523)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887777665543
No 83
>PRK00701 manganese transport protein MntH; Reviewed
Probab=95.77 E-value=2.8 Score=43.02 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=29.1
Q ss_pred ccHHHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHH
Q 011737 99 YTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVA 142 (478)
Q Consensus 99 ~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~ 142 (478)
.+..|+.++-+||+..++..+...+...+..+.-....+.-++.
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~l 137 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKL 137 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999998877665555555555555555544444443
No 84
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.74 E-value=1.3 Score=46.64 Aligned_cols=229 Identities=10% Similarity=-0.008 Sum_probs=111.9
Q ss_pred hhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcCccccccHHHHHHHhccCcceeehHHHHHHHHhhhHHH
Q 011737 53 LSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRA-PNSVKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVG 131 (478)
Q Consensus 53 L~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~-~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~ 131 (478)
|-+++...++|++..+..+++.-.+...|..-+....-+ ..+|. .-|.- ..+.+|+-.+--++...++.+...|..
T Consensus 88 LR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GG--GaYym-ISRsLGpEfGGSIGllFf~anV~~~am 164 (945)
T KOG1288|consen 88 LRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGG--GAYYM-ISRSLGPEFGGSIGLLFFVANVFNCAM 164 (945)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecC--ceEEE-EEcccCcccCCeeeehhhHHHHhcchh
Confidence 457888889998877777777666666665555442111 11121 13332 235677766566677777778888887
Q ss_pred HHHHHhhhHHHHHhhhccccCCCCC-CccccCCchhHhHHHHHHH----hhCCCCCCcchHHHHHHHHHHHHHH--HHHH
Q 011737 132 YTITASISMVAISKSNCYHKEGHKA-PCKYSYNPYMMALGIVEIL----LSQIPNFHKLSWLSTIAASMSFSYA--GIGM 204 (478)
Q Consensus 132 y~i~~~~~l~~i~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~p----l~~~~~l~~l~~~s~~~~~~~~~~~--~i~~ 204 (478)
++..+.+-+-..+. ....+... ...-+.++|-++...++.. ++++. -+.++..+++..+... ...+
T Consensus 165 ~isG~vE~il~nfG---~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lG----salfAkas~i~f~~is~s~~si 237 (945)
T KOG1288|consen 165 NISGFVEPILDNFG---KEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLG----SALFAKASNILFVVISVSLFSI 237 (945)
T ss_pred hhhhhhHHHHHhcC---ccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhh----HHHHHhhhhhhhhHHHHHHhhh
Confidence 77765554433322 22211111 1122344555544333322 33333 2223333332211100 0000
Q ss_pred -hhhhhhhhccCCC-------c------cccccccccc---Cc-------chhhhhhHHHHHhHHHHHHhhcchhHHHHH
Q 011737 205 -GLSFAKIVSGHGE-------K------TTLTGVEIGL---DL-------TAADKTWRIFQAIGNMAFACSYAAILIEIQ 260 (478)
Q Consensus 205 -~~~i~~~~~~~~~-------~------~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~faf~~~~~~~~i~ 260 (478)
+..++.+..+.+. . .+..+.+|+. +. ....+..++-..++++.=+-.|.-.--.+.
T Consensus 238 ~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMS 317 (945)
T KOG1288|consen 238 PISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMS 317 (945)
T ss_pred hheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcC
Confidence 1111111111110 0 0112333321 00 000111134445555544444444455667
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011737 261 DTLKSSPPEQEVMKKANTIATFTATTLYLMCGCL 294 (478)
Q Consensus 261 ~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~ 294 (478)
.|+|+| + |..++-...|....+++|+++.++
T Consensus 318 gELk~P--S-kSIP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 318 GELKAP--S-KSIPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred ccccCc--c-ccCCccchHHHHHHHHHHHHHHHH
Confidence 899998 3 689999999999999999977664
No 85
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.01 E-value=0.19 Score=51.39 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCccee
Q 011737 36 VWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYK 115 (478)
Q Consensus 36 ~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~ 115 (478)
.+..+-+=+-++-|+|-+.=|.--.+-||.++.+++++-.++..--...+.--...++.| +|.+|++++.+|+..+.
T Consensus 54 k~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G---~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 54 KWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGG---KSIGEIAGKYLGRTAKV 130 (575)
T ss_pred chhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCC---ccHHHHHHHHhhhhHHH
Confidence 345666777789999999999999999999999887765555554444444422222223 59999999999999999
Q ss_pred ehHHHHHHHHhhhHHHHHHHHhhhHH
Q 011737 116 ALGLVQYTLLCGAMVGYTITASISMV 141 (478)
Q Consensus 116 ~~~~~~~~~~~g~~i~y~i~~~~~l~ 141 (478)
+..+...+.......++.....+.+.
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98888887777777766666665554
No 86
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.26 Score=50.86 Aligned_cols=236 Identities=15% Similarity=0.112 Sum_probs=131.1
Q ss_pred cccHHHHHHHH-Hhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-hhcCC-cCccccccHHHHHHHh
Q 011737 33 TGTVWTASAHI-ITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAE-CYRAP-NSVKRNYTYRDAVKNY 108 (478)
Q Consensus 33 ~~s~~~a~~~l-~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~-~~~~~-~~~~~~~sy~~l~~~~ 108 (478)
+-+|++.++.- +-.+.|.= .|-++|...|+|...+++++.+...++..|..--.. |-+.. +.| ..|.= ..+.
T Consensus 29 ~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G---g~yfl-is~s 104 (643)
T KOG2083|consen 29 LFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG---GVYFL-ISRS 104 (643)
T ss_pred EEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC---cEEEE-EEec
Confidence 34555554322 22233332 345999999999998988877776666666433332 21211 111 13322 3467
Q ss_pred ccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHH
Q 011737 109 LGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWL 188 (478)
Q Consensus 109 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~ 188 (478)
+|+..+-.++++..+.+.-.|..|.+-.++.+.++++.+.. ..++. .-.+..++++.. ++...+|.
T Consensus 105 lg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~--------~~i~g--i~~vt~~ill~i----~~ag~~w~ 170 (643)
T KOG2083|consen 105 LGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESK--------EMIDG--IGSVTVLILLAI----NVAGVEWE 170 (643)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH--------HHhcc--hhHHHHHHHHHh----hhccchhH
Confidence 88888888899999999999999999999999999875210 02222 111122222222 34456666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccC----CC---cccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHH
Q 011737 189 STIAASMSFSYAGIGMGLSFAKIVSGH----GE---KTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQD 261 (478)
Q Consensus 189 s~~~~~~~~~~~~i~~~~~i~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 261 (478)
+.+..++.+..++-+.-..+...+..+ +. +.....-+..++..+- -.+++.++++.=+..|.-.-..+..
T Consensus 171 ~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~---~tfF~vf~vfFpaatgilaG~nisG 247 (643)
T KOG2083|consen 171 AKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG---YTFFSVFAVFFPAATGILAGANISG 247 (643)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC---CceEeeeeeecchhhhhhccccccC
Confidence 666665543211111111111111111 10 0000000000111111 1345556666666666666777889
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHhhh
Q 011737 262 TLKSSPPEQEVMKKANTIATFTATTLYLMCG 292 (478)
Q Consensus 262 ~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g 292 (478)
++|+| ++..++....|+...+.+|+.+.
T Consensus 248 dL~~P---q~~IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 248 DLKDP---QKAIPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred CCCCc---hhhcccchhhhhhhhhhhhhhhh
Confidence 99998 47889999999999999996543
No 87
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.26 E-value=0.9 Score=45.47 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=64.5
Q ss_pred HHHHhhhhhhhHhh----hHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcceee
Q 011737 41 AHIITAIVGSGVLS----LAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKA 116 (478)
Q Consensus 41 ~~l~~~~iG~GiL~----lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~ 116 (478)
+.+++++-+-|+-. .|++. .+|.+.++.+..+...+.+....-..+..+. .++..-..+++++.||+.|..+
T Consensus 197 ~iiv~~i~~~g~~~~~~~~~~~i-~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~---~~~~~~l~~~a~~~~G~~G~~l 272 (378)
T TIGR00796 197 IIVVNAIRSRGVTKPKKITKYTI-KAGLIAAVLLAFIYLSLFYLGATSAAAAGDA---VNGAQILSAYSQHLFGSLGSFL 272 (378)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHhhhccc---CCcHHHHHHHHHHHcchhHHHH
Confidence 34444444445422 34444 3555555555555444444443222221111 0123577888999999999999
Q ss_pred hHHHHHHHHhhhHHHHHHHHhhhHHHHH
Q 011737 117 LGLVQYTLLCGAMVGYTITASISMVAIS 144 (478)
Q Consensus 117 ~~~~~~~~~~g~~i~y~i~~~~~l~~i~ 144 (478)
..+.+.+.|++++++.....+|+++++.
T Consensus 273 l~i~v~lACLtT~iGli~~~a~~f~~~~ 300 (378)
T TIGR00796 273 LGLIITLACLTTAVGLTTACSEYFHKLV 300 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998863
No 88
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=92.35 E-value=6.6 Score=39.73 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=51.8
Q ss_pred CCCCCcccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHH---HHHHHHHhhcCCcC-cccccc
Q 011737 26 DDGRSRRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLY---TSGLLAECYRAPNS-VKRNYT 100 (478)
Q Consensus 26 ~~~~~~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~---t~~~l~~~~~~~~~-~~~~~s 100 (478)
++++++++.|.+||.+.-+.+.+|+| +-...-|..-.| ..+++++-+.+++..- +=..|..-+|..++ |+-.-.
T Consensus 11 ~~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GG 89 (416)
T PF01235_consen 11 KKKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGG 89 (416)
T ss_pred CCCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeec
Confidence 34455567899999999999999999 556999998777 3456666555554443 33333333443332 111111
Q ss_pred HHHHHHHhccCc
Q 011737 101 YRDAVKNYLGGR 112 (478)
Q Consensus 101 y~~l~~~~~G~~ 112 (478)
-.-..++.+|++
T Consensus 90 P~yyi~~gl~~k 101 (416)
T PF01235_consen 90 PMYYIEKGLGSK 101 (416)
T ss_pred HHHHHHHHhccc
Confidence 222356667654
No 89
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=91.94 E-value=3.9 Score=42.91 Aligned_cols=240 Identities=12% Similarity=0.066 Sum_probs=115.1
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHh----hcCCcCccccccHHHHH
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAEC----YRAPNSVKRNYTYRDAV 105 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~----~~~~~~~~~~~sy~~l~ 105 (478)
.|+.-++.....++.+.+|++ ++++|--..+.|.-.....+ . ......++... ..+. + ..+-.|.-
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~--~---~l~~~~~~~~~f~Pvf~~~--~--v~~~~eYl 114 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEW--N---ALLSVLLLGWIFIPVFYRL--G--VTTMYEYL 114 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHH--H---HHHHHHhhheEEEEEEEec--C--eeehhHHH
Confidence 466777888888988988888 66899888777743222111 1 11112222221 1111 1 34666667
Q ss_pred HHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcc
Q 011737 106 KNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKL 185 (478)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l 185 (478)
++-||++.|....+...+..+.-...++-.-+-.+++.++ ++...-.++..++...-.....++..
T Consensus 115 ~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------------~~~~l~~~~~~~ic~~YT~~GGlkaV 180 (585)
T KOG2349|consen 115 EKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------------INLYLIVVILGLICVFYTALGGLKAV 180 (585)
T ss_pred HHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------------cCceeehHHHHHHHHHHHHhcCeeEE
Confidence 7778888666555544444332222222222222222221 11111122233333334456666666
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhh-h----hccC-CCccccccc-ccccCcchhhhhhHHHHH-hHHHHHHhhcchhHH
Q 011737 186 SWLSTIAASMSFSYAGIGMGLSFAK-I----VSGH-GEKTTLTGV-EIGLDLTAADKTWRIFQA-IGNMAFACSYAAILI 257 (478)
Q Consensus 186 ~~~s~~~~~~~~~~~~i~~~~~i~~-~----~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~faf~~~~~~~ 257 (478)
-++=.+..+.++.-...+......+ + +.+. ..+...... ++..|++.-+..|..+.+ ...-.-.|..+.+..
T Consensus 181 i~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~V 260 (585)
T KOG2349|consen 181 IWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIV 260 (585)
T ss_pred EEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHH
Confidence 6666665555443211122211111 0 0011 111111111 233334444556765433 334444456666665
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011737 258 EIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYA 297 (478)
Q Consensus 258 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~ 297 (478)
+=+-.+| +.++.++..........+........|..
T Consensus 261 QR~lsl~----slk~ak~~~~~~~~~~~l~~~~~~~~G~i 296 (585)
T KOG2349|consen 261 QRYLSLP----SLKHAKPSLLLFGYGVLLIMFIMVFVGMI 296 (585)
T ss_pred hHHhccc----cHHHhhhhhhhhhhHHHHHHHhhccccee
Confidence 5555555 44888888777777766666655554444
No 90
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=91.89 E-value=15 Score=36.66 Aligned_cols=82 Identities=10% Similarity=0.136 Sum_probs=50.5
Q ss_pred ccHHHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhC
Q 011737 99 YTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQ 178 (478)
Q Consensus 99 ~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~ 178 (478)
++..|..++-+||+..+...+...+........-+...+.-++.+.+ .+...+.++.++..+.+..
T Consensus 42 ~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g--------------~~~~~~~~~~~~~~~~ll~ 107 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG--------------IPLWIWVLLVAVIAILLLW 107 (358)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcHHHHHHHHHHHHHHHH
Confidence 47888888889998888887777777776666666666665554421 2223444444444443334
Q ss_pred --CCCCCcchHHHHHHHH
Q 011737 179 --IPNFHKLSWLSTIAAS 194 (478)
Q Consensus 179 --~~~l~~l~~~s~~~~~ 194 (478)
.++.+.+..+...-+.
T Consensus 108 ~~~~~y~~~E~~~~~lv~ 125 (358)
T PF01566_consen 108 LSSGGYRRLERILKVLVA 125 (358)
T ss_pred HHhccchHHHHHHHHHHH
Confidence 6667777666554333
No 91
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=91.79 E-value=1.2 Score=45.07 Aligned_cols=107 Identities=14% Similarity=0.278 Sum_probs=69.8
Q ss_pred hHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcceeehHHHHHHHHhhhHHHHHH
Q 011737 55 LAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTI 134 (478)
Q Consensus 55 lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i 134 (478)
.-.....+|++.++.+.++-..+.+.....-... .+..++..-..+++++.+|+.|..+..+++.+.|+.++++-..
T Consensus 220 ~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~---~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~ 296 (427)
T PF05525_consen 220 IKKYTIKAGLIAGILLALIYGGLAYLGATSSGSF---PDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLIS 296 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc---cCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666655555554444444333222211 1111223467778999999999999999999999999999999
Q ss_pred HHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhh
Q 011737 135 TASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLS 177 (478)
Q Consensus 135 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~ 177 (478)
..+|++++..+ ..+.+.|..+..++.+.++
T Consensus 297 a~a~yf~~~~~-------------kisY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 297 ACAEYFSELFP-------------KISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred HHHHHHHHHhc-------------ccChHHHHHHHHHHHHHHH
Confidence 99999999864 2445566665555555444
No 92
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=91.00 E-value=23 Score=37.30 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=49.8
Q ss_pred cHHHHHHHHHhhhhhhh-HhhhHHHHHhhC-hHH---HHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhc
Q 011737 35 TVWTASAHIITAIVGSG-VLSLAWGLAQLG-WII---GIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYL 109 (478)
Q Consensus 35 s~~~a~~~l~~~~iG~G-iL~lP~af~~~G-~~~---g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~ 109 (478)
|..+-++..++..+|.| +.-.|+-..+-| ... =.+.+++++.=..+.=..+.+-.+. .+ ..-|++++...-
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~-~~---~~~~~~~~p~~~ 81 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRS-GP---IGAWKRLCPIFK 81 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TS---HHHS-HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc---cccccccccccc
Confidence 34567888899999999 778999976554 221 1122222232222322333332222 11 234555543322
Q ss_pred cCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhh
Q 011737 110 GGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKS 146 (478)
Q Consensus 110 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 146 (478)
-+++...+..+..++-|.+..+..+..+...
T Consensus 82 ------giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s 112 (523)
T PF00209_consen 82 ------GIGYAMVLISFLIAIYYSVIVAWALYYFFQS 112 (523)
T ss_dssp ------THHHH---HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ------ccccccccccccccccccccccccccccccc
Confidence 2445555555555666666666665555443
No 93
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=87.40 E-value=6.8 Score=39.18 Aligned_cols=116 Identities=15% Similarity=0.237 Sum_probs=75.8
Q ss_pred HhhhhhhhHhhhH---HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcC--ccccccHHHHHHHhccCcceeehH
Q 011737 44 ITAIVGSGVLSLA---WGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNS--VKRNYTYRDAVKNYLGGRKYKALG 118 (478)
Q Consensus 44 ~~~~iG~GiL~lP---~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~--~~~~~sy~~l~~~~~G~~~~~~~~ 118 (478)
+|+.=.-|+-.-. ...-.+|++.++.+.++...+.+.. ...++..+ +.+..=..+.+++.||+.|..+..
T Consensus 208 v~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~ 282 (431)
T COG1114 208 VNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLG-----ATSASAAGLAANGGQILSAYSQHLFGSYGSILLG 282 (431)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchHhhcccccchHHHHHHHHHHHhchhhHHHHH
Confidence 4444444544433 3334577776666666555555554 11111011 112345677799999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhh
Q 011737 119 LVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLS 177 (478)
Q Consensus 119 ~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~ 177 (478)
.++.+.|+.++++-+...+|++++..+ ..+...|..++.++.+.++
T Consensus 283 ~iv~lACLTTaiGLi~a~aefF~~~~p-------------~~SY~~~v~if~i~sflva 328 (431)
T COG1114 283 LIVFLACLTTAVGLIVACAEFFSKLVP-------------KLSYKTWVIIFTLISFLVA 328 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998864 2445666666666655443
No 94
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=78.86 E-value=17 Score=37.03 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcc-chHHHHHHHhhhhhhhHHhhhhHHHHHHHhcCC--CchhHHHH-HHHHHHHHHHHHHH
Q 011737 380 FRLIWRTAFVAMATLISMAFP-FFNEVLAFLGAIAYWPMTVYFPMEMYIVRKEIK--RGTICWFG-LHLVNLVCLLAALA 455 (478)
Q Consensus 380 ~~~~~~~~~~~~~~~ia~~~p-~~~~vi~l~Ga~~~~~l~fi~P~l~~~~~~~~~--~~~~~~~~-~~~~~~~g~~~~v~ 455 (478)
.|..........+.+.+...| -+....+.+|++...+.+-+.|++++++-++.. ....+... ......+-++.|+.
T Consensus 323 ~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~ 402 (415)
T COG0814 323 GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGIL 402 (415)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHH
Confidence 355555566667777777777 477888889999999999999999999876543 22223222 22344444444444
Q ss_pred HHHHHHH
Q 011737 456 AGCGSIQ 462 (478)
Q Consensus 456 g~~~si~ 462 (478)
.....+.
T Consensus 403 ~~~~~~~ 409 (415)
T COG0814 403 VILSPFL 409 (415)
T ss_pred HHHHHHH
Confidence 4444443
No 95
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=77.89 E-value=78 Score=31.50 Aligned_cols=244 Identities=13% Similarity=0.064 Sum_probs=128.1
Q ss_pred cccccHHHHHHHHHhhhhhhhH-hhhHHHHHhhChHHHHHHHHHHHHHHHHHHHH-HHH----hhcCCcCccccccHHHH
Q 011737 31 RRTGTVWTASAHIITAIVGSGV-LSLAWGLAQLGWIIGIATLVIFSGISLYTSGL-LAE----CYRAPNSVKRNYTYRDA 104 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~-l~~----~~~~~~~~~~~~sy~~l 104 (478)
.|+.+-.-..+....+-+++.- ++=|-+.-..|+ |++++..+-+-+.+-... +.+ ..|+. +..|-.|+
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Gl--gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~----nAltI~D~ 111 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGL--GWVLLAMIQVPTVWLALGVLGKKFAILAREY----NALTINDL 111 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhch--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh----CCeeHHHH
Confidence 3444445566777777777763 356777777773 444444443333332222 222 11222 24677777
Q ss_pred HHHh-ccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCC
Q 011737 105 VKNY-LGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFH 183 (478)
Q Consensus 105 ~~~~-~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~ 183 (478)
-++= =++...++..+.+.+...+..++..+..++.++..+. .+...-++++++.+..-......+
T Consensus 112 l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g--------------idY~tgL~ifa~~V~iYt~fGGFR 177 (473)
T COG4145 112 LFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG--------------IDYTTGLLIFAVSVAIYTAFGGFR 177 (473)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC--------------CCchhhHHHHHHHHHHHHhhccee
Confidence 6554 3555667778888888888899999989998887653 344555667777666666677666
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhh--hcc-----CCCcccccccccccCcchhhhh--hHHHHHhH-HHHHHhhcc
Q 011737 184 KLSWLSTIAASMSFSYAGIGMGLSFAKI--VSG-----HGEKTTLTGVEIGLDLTAADKT--WRIFQAIG-NMAFACSYA 253 (478)
Q Consensus 184 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~faf~~~ 253 (478)
.....-.+.-..++.-.++.....++.. .++ +..|.....+ ++.++. .+++.++- ..+++--++
T Consensus 178 AvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P------~~~~~~l~~~Fm~Sfwilv~~gvlgl 251 (473)
T COG4145 178 AVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTP------QGADDILDPPFMASFWILVCFGVLGL 251 (473)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCC------CCCcccccchHHHHHHHHHHHHHhcC
Confidence 6665554444444433323333333321 111 0011111100 111110 12222221 122333344
Q ss_pred hhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHH---hhhhhhhhcccCccc
Q 011737 254 AILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYL---MCGCLGYAALGNHAQ 304 (478)
Q Consensus 254 ~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~---~~g~~gy~~fg~~~~ 304 (478)
+...-=+-.-||. |...+.+.++..+..++-+ +.|.+|...+.|-+.
T Consensus 252 P~t~vr~ia~kDs----kaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~ 301 (473)
T COG4145 252 PHTAVRCIAFKDS----KAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTV 301 (473)
T ss_pred cHHHHHHHhccch----hHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCc
Confidence 4333323334554 6777777666666655544 678888888877554
No 96
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=77.82 E-value=12 Score=38.03 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=66.3
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhh
Q 011737 59 LAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASI 138 (478)
Q Consensus 59 f~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~ 138 (478)
...+|.+.++.+.++-+.+.+....--.. ..+. .++..=....+++.+|+++..+..+.+++.|+.++++-....++
T Consensus 228 t~~ag~ia~~~L~~vY~gL~~lGa~s~~~-~~~~--~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~ 304 (439)
T PRK15433 228 TVWAGLMAGVGLTLLYLALFRLGSDSASL-VDQS--ANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAE 304 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccc-ccCC--CcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666655555555554321110 1100 01123445558889999999999999999999999999999999
Q ss_pred hHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhC
Q 011737 139 SMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQ 178 (478)
Q Consensus 139 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~ 178 (478)
.+++..+ .+.+.+..+..++.++++.
T Consensus 305 ~f~~~~~--------------isY~~~v~i~~l~S~~lSn 330 (439)
T PRK15433 305 FFAQYVP--------------LSYRTLVFILGGFSMVVSN 330 (439)
T ss_pred HHHhhcC--------------CcHHHHHHHHHHHHHHHHH
Confidence 9887632 2334556566666666653
No 97
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=77.03 E-value=91 Score=31.85 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=42.2
Q ss_pred cHHHHHHHHHhhhhhhhHhhhHHHHH-hhC--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHh
Q 011737 35 TVWTASAHIITAIVGSGVLSLAWGLA-QLG--WIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNY 108 (478)
Q Consensus 35 s~~~a~~~l~~~~iG~GiL~lP~af~-~~G--~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~ 108 (478)
.....-+.+..-..|+|=|=.|-... ++| |+.+.+.+++.++.--.-..+-.. +. + .+++++++++
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~--~~-~-----~~~~~l~~~v 72 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVA--KS-G-----GGIEDLASRV 72 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh--hc-C-----CCHHHHhccc
Confidence 34567788888899999888888766 466 777877777666554433322222 11 1 2777777554
No 98
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=75.80 E-value=1e+02 Score=31.80 Aligned_cols=264 Identities=14% Similarity=0.047 Sum_probs=121.0
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhC--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCcc-ccccHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLG--WIIGIATLVIFSGISLYTSGLLAECYRAPNSVK-RNYTYRDA 104 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G--~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~-~~~sy~~l 104 (478)
+..+|+=|+++-+..=....++.+..-+..+.-+.| |.-+++...+- ...+...++-. ..||. =+.+++-.
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG---~~~~~~f~~ln---s~~G~~yhIsFpv~ 123 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVG---YLFTAIFLVLN---SRPGSDYHISFPVL 123 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHH---HHHHHHHHHHc---cCCCcccccceeee
Confidence 344677788887777777777777777777777888 34344433221 11122222221 12321 13566666
Q ss_pred HHHhccCcceeehHHHHHHHHhhhHHHHHH---HHhhhHHHHHhhhccccC--CCCCC-ccccCCchh--HhHHHHHHHh
Q 011737 105 VKNYLGGRKYKALGLVQYTLLCGAMVGYTI---TASISMVAISKSNCYHKE--GHKAP-CKYSYNPYM--MALGIVEILL 176 (478)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i---~~~~~l~~i~~~~~~~~~--~~~~~-~~~~~~~~~--~l~~~~~~pl 176 (478)
.|..||-++... -+..-..++|+=|-+ +.++-.+-+++....+.. ++.-. .......++ +++-++.+|.
T Consensus 124 sR~sFGiygS~~---pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~ 200 (572)
T KOG2466|consen 124 SRSSFGIYGSLW---PIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPF 200 (572)
T ss_pred eeeehhhhHhHH---HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhe
Confidence 777777654332 233334444444422 334444444443322111 11100 011112222 2233333444
Q ss_pred hCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHh-hcchh
Q 011737 177 SQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFAC-SYAAI 255 (478)
Q Consensus 177 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~ 255 (478)
.+ ....++|.+-....+.+...++-.+ ++...+.++...-.... .........|.++.++...+=.| ...-|
T Consensus 201 ~~-~~p~~ir~lf~~ka~~t~fA~~g~L---Iw~l~kAhG~G~l~~~~---st~~gs~~aWa~~~~i~~~~~~fstl~~N 273 (572)
T KOG2466|consen 201 YW-FPPYKIRHLFTWKAVLTPFAAFGFL---IWLLKKAHGLGHLFDSK---STVSGSAHAWAFVRSIMSCIANFSTLIVN 273 (572)
T ss_pred ee-ccHHHhhhHHHHHHhhhHHHHHHHH---HHHHHhcCCccccccCC---CcccccchhHHHHHHHHHHHhccchhhcc
Confidence 33 3356666665555554433221122 22222222211000000 01223344466666555444444 45567
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHH----hhhhhhhhcccCccc--ccccccc
Q 011737 256 LIEIQDTLKSSPPEQEVMKKANTIATFTATTLYL----MCGCLGYAALGNHAQ--GNILTGF 311 (478)
Q Consensus 256 ~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~----~~g~~gy~~fg~~~~--~~il~~~ 311 (478)
.|..-+--|+| ......-.+++.+.+.+-. +.+..++-.||.+.- -+|++++
T Consensus 274 ~pDFsRF~ksp----~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 274 APDFSRFAKSP----NAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred CchhHhhcCCC----CccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 77777777776 3333333333444444444 444567888998753 3455554
No 99
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=61.01 E-value=1.4e+02 Score=28.04 Aligned_cols=47 Identities=4% Similarity=0.005 Sum_probs=30.8
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccccccccccc
Q 011737 260 QDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFG 312 (478)
Q Consensus 260 ~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~~ 312 (478)
.+.+++| ++++.+.+...+..++|...-..++..+++.. +.++..+|
T Consensus 18 ~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p 64 (251)
T PRK04949 18 WKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLP 64 (251)
T ss_pred HHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCc
Confidence 3666776 78888888888888888877555555555432 34444444
No 100
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=59.42 E-value=2.3e+02 Score=29.59 Aligned_cols=158 Identities=13% Similarity=0.068 Sum_probs=74.3
Q ss_pred cHHHHHHHHHhhhhhhhHhhhHHH-----HHh------hC----hHHHHHHHHHHHHHHHHHHHHHHHh------hcCCc
Q 011737 35 TVWTASAHIITAIVGSGVLSLAWG-----LAQ------LG----WIIGIATLVIFSGISLYTSGLLAEC------YRAPN 93 (478)
Q Consensus 35 s~~~a~~~l~~~~iG~GiL~lP~a-----f~~------~G----~~~g~~~l~~~~~~~~~t~~~l~~~------~~~~~ 93 (478)
|.++-..+++.+-+|+|++.-.-+ +.+ .+ .-.+.....+=+.+..|+.+.+.-. +++.+
T Consensus 76 S~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y~k~~ 155 (485)
T PF02028_consen 76 STFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFYNKGK 155 (485)
T ss_dssp -HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHTS--
T ss_pred CchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeeeecCC
Confidence 445667888899999998754322 111 01 1223334444444444444443332 23222
Q ss_pred C-ccccccHHHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHH
Q 011737 94 S-VKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIV 172 (478)
Q Consensus 94 ~-~~~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (478)
| ..+..-|+-++++.-|+ .+.++|+...+...+....-+-+....+..-++... .. ++ .......+++...+
T Consensus 156 ~~~~ss~l~pl~g~~~~g~-~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~-Gi-~~----~~~~~~~ii~~~~~ 228 (485)
T PF02028_consen 156 PLRISSALYPLLGDRINGP-LGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLF-GI-PN----TFGLQIIIIIVITV 228 (485)
T ss_dssp -SSGGGGCHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TS-SS----THHHHHHHHHHHHH
T ss_pred CCchhhhhhhhcCCcccCc-chhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc-CC-CC----chHHHHHHHHHHHH
Confidence 3 11222344455544443 457777776666666665555555555555544321 10 00 00011111222233
Q ss_pred HHHhhCCCCC-CcchHHHHHHHHHHHHH
Q 011737 173 EILLSQIPNF-HKLSWLSTIAASMSFSY 199 (478)
Q Consensus 173 ~~pl~~~~~l-~~l~~~s~~~~~~~~~~ 199 (478)
+...+....+ |.++++|-+.+...+..
T Consensus 229 i~~~S~~~Gl~kGIk~LS~~n~~l~~~l 256 (485)
T PF02028_consen 229 IFTISAVSGLDKGIKRLSNINVYLAFAL 256 (485)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 34777777777665543
No 101
>PLN00151 potassium transporter; Provisional
Probab=56.51 E-value=3.2e+02 Score=30.40 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=15.0
Q ss_pred HHHhHHHHHHhhcchhHHHHHHhhcCC
Q 011737 240 FQAIGNMAFACSYAAILIEIQDTLKSS 266 (478)
Q Consensus 240 ~~~~~~~~faf~~~~~~~~i~~~m~~p 266 (478)
+..+|-++.|.+|.+.+ +++|-+=
T Consensus 347 w~~LGgVvLciTGaEAL---fADLGHF 370 (852)
T PLN00151 347 WSALGGCVLCATGSEAM---FADLGYF 370 (852)
T ss_pred EEEecceeeeeccchhh---hcccCCC
Confidence 44566677777776654 5666543
No 102
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=50.95 E-value=35 Score=30.54 Aligned_cols=65 Identities=14% Similarity=0.057 Sum_probs=48.1
Q ss_pred HHHHHHHhhhhhhhHHhhhhHHHHHHHhcCCCc---------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011737 403 NEVLAFLGAIAYWPMTVYFPMEMYIVRKEIKRG---------T-ICWFGLHLVNLVCLLAALAAGCGSIQGVNQA 467 (478)
Q Consensus 403 ~~vi~l~Ga~~~~~l~fi~P~l~~~~~~~~~~~---------~-~~~~~~~~~~~~g~~~~v~g~~~si~~i~~~ 467 (478)
+.-.-..|++.+.-+..++|+...+..++++.. + .+.....+...+|++.+++....|...+.+-
T Consensus 44 s~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~G 118 (195)
T PF05805_consen 44 SCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSEG 118 (195)
T ss_pred chhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 344556778888889999999999999987432 2 2334456667888888888888888888764
No 103
>PHA02764 hypothetical protein; Provisional
Probab=48.83 E-value=2.7e+02 Score=27.26 Aligned_cols=93 Identities=11% Similarity=0.116 Sum_probs=52.4
Q ss_pred CCcccccHHHHHH-HHHhhhhhhhHhhhHHHHHhh--ChHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcCccccccHHHH
Q 011737 29 RSRRTGTVWTASA-HIITAIVGSGVLSLAWGLAQL--GWIIGIATLVIFSGISLYTSGLLAECY-RAPNSVKRNYTYRDA 104 (478)
Q Consensus 29 ~~~~~~s~~~a~~-~l~~~~iG~GiL~lP~af~~~--G~~~g~~~l~~~~~~~~~t~~~l~~~~-~~~~~~~~~~sy~~l 104 (478)
..-|..|.+.+++ |+.+...|.++ +.|+-++.. |.- .+...++.++++........+.. +.++.| ..+.|
T Consensus 9 GLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAG-GdYVY--- 82 (399)
T PHA02764 9 GIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNG-GDYAY--- 82 (399)
T ss_pred CceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ceEEE---
Confidence 3345667787877 55555555544 556544333 322 33444445555555444444432 223322 13555
Q ss_pred HHHhccCcceeehHHHHHHHHhh
Q 011737 105 VKNYLGGRKYKALGLVQYTLLCG 127 (478)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g 127 (478)
.++++||+.+.++++..+.....
T Consensus 83 ISRAFGP~~GFLvG~a~WLtl~~ 105 (399)
T PHA02764 83 IRTAFSSKFYTIFGISLWLTYVL 105 (399)
T ss_pred hHHhhCccHHHHHHHHHHHHHHh
Confidence 78999999988888877766543
No 104
>PRK09928 choline transport protein BetT; Provisional
Probab=44.41 E-value=4.6e+02 Score=28.64 Aligned_cols=103 Identities=14% Similarity=0.067 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhhhhhHhhhHHH-----HHh--hC-------hHHHHHHHHHHHHHHHHHHHHHHHh------hcCCcCcc
Q 011737 37 WTASAHIITAIVGSGVLSLAWG-----LAQ--LG-------WIIGIATLVIFSGISLYTSGLLAEC------YRAPNSVK 96 (478)
Q Consensus 37 ~~a~~~l~~~~iG~GiL~lP~a-----f~~--~G-------~~~g~~~l~~~~~~~~~t~~~l~~~------~~~~~~~~ 96 (478)
++-+.+++.+-+|+|++.-..+ +.. .| .-.+.....+=+.+..|+.+.+.-. +++..|
T Consensus 96 ~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~~~p-- 173 (679)
T PRK09928 96 LSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLP-- 173 (679)
T ss_pred chHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCCCC--
Confidence 4456788889999998753322 111 11 1234455555566666666665553 243333
Q ss_pred ccccHHHHHHHhccCc----ceeehHHHHHHHHhhhHHHHHHHHhhhHHHH
Q 011737 97 RNYTYRDAVKNYLGGR----KYKALGLVQYTLLCGAMVGYTITASISMVAI 143 (478)
Q Consensus 97 ~~~sy~~l~~~~~G~~----~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i 143 (478)
.+.+...+-++|++ .+.++++.-.+...+....-+-+....++.-
T Consensus 174 --l~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~G 222 (679)
T PRK09928 174 --LTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYG 222 (679)
T ss_pred --CchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666643 3456666555544444443333333333333
No 105
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=39.23 E-value=71 Score=26.02 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHhhhhhhhHhhhHHHHHhh---ChHHHHHHHHHHHHH----HHHHHHHHHHhhcCCcCccccccHHHH
Q 011737 33 TGTVWTASAHIITAIVGSGVLSLAWGLAQL---GWIIGIATLVIFSGI----SLYTSGLLAECYRAPNSVKRNYTYRDA 104 (478)
Q Consensus 33 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~---G~~~g~~~l~~~~~~----~~~t~~~l~~~~~~~~~~~~~~sy~~l 104 (478)
+..|...++.+.-..+|+..+.+....... |-..-...++++|++ ..|-..++..+++.. + -.+|.++
T Consensus 38 k~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~-~---Gysf~~I 112 (115)
T PF05915_consen 38 KIPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGY-K---GYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCC-C---CCCHhhC
Confidence 334666666666677777777666553311 101111222333333 345566666666542 2 3677765
No 106
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=38.51 E-value=1.1e+02 Score=24.20 Aligned_cols=20 Identities=5% Similarity=-0.165 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011737 440 FGLHLVNLVCLLAALAAGCG 459 (478)
Q Consensus 440 ~~~~~~~~~g~~~~v~g~~~ 459 (478)
.+...++++|++.++...|.
T Consensus 75 ~~tl~~lllGv~~G~~n~w~ 94 (100)
T TIGR02230 75 SWTLTMLIVGVVIGCLNAWH 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556677787777777663
No 107
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=37.86 E-value=30 Score=22.86 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCccc
Q 011737 274 KKANTIATFTATTLYLMCGCLGYAALGNHAQ 304 (478)
Q Consensus 274 ~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~ 304 (478)
..+..+++.+..++..+.|..-|.+||+..+
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 3456677778888888888888999997643
No 108
>CHL00020 psbN photosystem II protein N
Probab=35.05 E-value=38 Score=22.07 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCccc
Q 011737 276 ANTIATFTATTLYLMCGCLGYAALGNHAQ 304 (478)
Q Consensus 276 ~~~~a~~~~~~lY~~~g~~gy~~fg~~~~ 304 (478)
+..+++.+..++..+.|..-|.+||+..+
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 45667777777788888888889997643
No 109
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=35.04 E-value=2.3e+02 Score=23.28 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=35.9
Q ss_pred CCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChH-HHHHHHHHHHHHHHH-HHHHHHHhhcCCcC
Q 011737 29 RSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWI-IGIATLVIFSGISLY-TSGLLAECYRAPNS 94 (478)
Q Consensus 29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~-~g~~~l~~~~~~~~~-t~~~l~~~~~~~~~ 94 (478)
.--|+.|.-+..+...-+.+-.-++++|.++- .||+ .+..+.++..+++.+ ....+.+. +..+|
T Consensus 16 vV~rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~l~rl-KRGKP 81 (121)
T PF11990_consen 16 VVFRGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVFVGGKLLARL-KRGKP 81 (121)
T ss_pred CeecCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HcCCc
Confidence 33566666665555544444446778999987 7765 455444444444444 45555554 33455
No 110
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=32.19 E-value=44 Score=21.86 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCccc
Q 011737 276 ANTIATFTATTLYLMCGCLGYAALGNHAQ 304 (478)
Q Consensus 276 ~~~~a~~~~~~lY~~~g~~gy~~fg~~~~ 304 (478)
+..+++.+..++-.+.|..-|.+||+..+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 34566777777778888888999996543
No 111
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=32.01 E-value=6.3e+02 Score=26.66 Aligned_cols=48 Identities=13% Similarity=-0.053 Sum_probs=40.9
Q ss_pred ccHHHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhh
Q 011737 99 YTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKS 146 (478)
Q Consensus 99 ~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 146 (478)
.-..++-...+||++...+...+.+..+..+++-+...++....+.++
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 366777888899999999999999999999999999999888877654
No 112
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.09 E-value=2.9e+02 Score=22.38 Aligned_cols=65 Identities=18% Similarity=0.045 Sum_probs=36.3
Q ss_pred CCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHH-HHHHHHHHHHHhhcCCcC
Q 011737 29 RSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSG-ISLYTSGLLAECYRAPNS 94 (478)
Q Consensus 29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~-~~~~t~~~l~~~~~~~~~ 94 (478)
.--|+.|.-.......-+....-++++|.+..-.+|......+++..+ .-.++...+-+..+ .+|
T Consensus 13 vV~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKR-GrP 78 (111)
T TIGR03750 13 VVFRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKR-GKP 78 (111)
T ss_pred ceecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHc-CCC
Confidence 334556655554444433333346789987766677776555544444 44445566666544 355
No 113
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=29.05 E-value=1.2e+02 Score=28.07 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHccchHHHHHH---------HhhhhhhhHHhhhhHHHHHHHhcCCC----chhHHHHHHHHHHHHHHHH
Q 011737 387 AFVAMATLISMAFPFFNEVLAF---------LGAIAYWPMTVYFPMEMYIVRKEIKR----GTICWFGLHLVNLVCLLAA 453 (478)
Q Consensus 387 ~~~~~~~~ia~~~p~~~~vi~l---------~Ga~~~~~l~fi~P~l~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~ 453 (478)
+..+.++++|..++.++-++.. -||.++.-+.++=-.++ .+..++ .....++.|+++++|+++.
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLikwilI---v~~sd~f~~y~n~q~wLwwi~~vlG~ll~ 237 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIKWILI---VRFSDDFESYFNGQYWLWWIFLVLGLLLF 237 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhheeeEE---eecccccccccccchHHHHHHHHHHHHHH
Confidence 3344455555555555544443 47777777766651111 111111 1123355688889999888
Q ss_pred HHHHH--HHHHHHHHhcc
Q 011737 454 LAAGC--GSIQGVNQALH 469 (478)
Q Consensus 454 v~g~~--~si~~i~~~~~ 469 (478)
+-+++ ..|+.+-+.++
T Consensus 238 lr~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 238 LRGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHHHhHHHHhhHHHHHh
Confidence 88776 44555444443
No 114
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=28.34 E-value=6.7e+02 Score=25.79 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=31.7
Q ss_pred cHHHHHHHHHhhhhhhhHhhhHHHHH-hhC--hHHHHHHHHHHHHH
Q 011737 35 TVWTASAHIITAIVGSGVLSLAWGLA-QLG--WIIGIATLVIFSGI 77 (478)
Q Consensus 35 s~~~a~~~l~~~~iG~GiL~lP~af~-~~G--~~~g~~~l~~~~~~ 77 (478)
.....-+.+..-..|+|=|=.|-... ++| |..+.+.+++.++.
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vg 54 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVG 54 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45667888899999999888888776 466 66677666655443
No 115
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=27.00 E-value=6.2e+02 Score=24.94 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccc
Q 011737 269 EQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGF 311 (478)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~ 311 (478)
+...-.+++.++...+.-.-+.+...||.......++++...+
T Consensus 42 ~~~~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l 84 (340)
T PF12794_consen 42 SFSHTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVAL 84 (340)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 3456778899999999999999999999988766666665555
No 116
>PRK12768 CysZ-like protein; Reviewed
Probab=26.83 E-value=5.3e+02 Score=24.07 Aligned_cols=27 Identities=15% Similarity=-0.055 Sum_probs=19.5
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 011737 260 QDTLKSSPPEQEVMKKANTIATFTATTLYLMC 291 (478)
Q Consensus 260 ~~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~ 291 (478)
.+++.|| ++++++..++.....++...
T Consensus 9 ~~ql~~~-----~~r~vl~~~~~lt~~l~~~~ 35 (240)
T PRK12768 9 LARLLSP-----PMRSVFWKVLGLTLLLLVVL 35 (240)
T ss_pred HHHhCCH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4667776 67888777777777777664
No 117
>PLN00150 potassium ion transporter family protein; Provisional
Probab=25.75 E-value=9.5e+02 Score=26.70 Aligned_cols=25 Identities=8% Similarity=0.175 Sum_probs=15.8
Q ss_pred HHHHhHHHHHHhhcchhHHHHHHhhcCC
Q 011737 239 IFQAIGNMAFACSYAAILIEIQDTLKSS 266 (478)
Q Consensus 239 ~~~~~~~~~faf~~~~~~~~i~~~m~~p 266 (478)
.+..+|-++.|.+|.+.+ +++|-+=
T Consensus 286 g~~~LG~V~L~iTGaEAL---yADlGHF 310 (779)
T PLN00150 286 GWESLGGIVLCMTGTEAM---FADLGHF 310 (779)
T ss_pred eEEEecceeeeecchhhh---hccccCC
Confidence 345667777777777664 6677643
No 118
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=25.37 E-value=3.1e+02 Score=27.96 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=55.7
Q ss_pred HhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcch
Q 011737 107 NYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLS 186 (478)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~ 186 (478)
..+|.++.+++.+++++.-+.+.+++....-+.+..+.+. + ... ..+-+ ..++..++....+++.+.
T Consensus 301 ~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~-------~----~~~-~~~ri-~~i~~~~~G~~~~~~~vW 367 (416)
T PF01235_consen 301 TVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGG-------K----KAI-WIYRI-LFIAMVFIGAVIDLDLVW 367 (416)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------c----eEE-Eeeee-hhhhhhhhhhcccchhHH
Confidence 4467889999999999999999999999999988887521 0 111 11111 122233444556777777
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011737 187 WLSTIAASMSFSYAGIGMG 205 (478)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~ 205 (478)
.++=++..++...-.+.+.
T Consensus 368 ~~~Di~~~lmai~Nlial~ 386 (416)
T PF01235_consen 368 DLADIANGLMAIPNLIALL 386 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777666655544444
No 119
>TIGR00909 2A0306 amino acid transporter.
Probab=24.20 E-value=5.8e+02 Score=25.68 Aligned_cols=47 Identities=13% Similarity=-0.047 Sum_probs=40.5
Q ss_pred cHHHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhh
Q 011737 100 TYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKS 146 (478)
Q Consensus 100 sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 146 (478)
...++.++..|+++..++.+...+..++++.+.+...++.+..+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46677778888888889999999999999999999999999888754
No 120
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=23.36 E-value=1.9e+02 Score=22.25 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=22.1
Q ss_pred HHHhhhhhhhHHhhhhHHHHHHHhcCCC
Q 011737 407 AFLGAIAYWPMTVYFPMEMYIVRKEIKR 434 (478)
Q Consensus 407 ~l~Ga~~~~~l~fi~P~l~~~~~~~~~~ 434 (478)
++.+...+..++++.|+..-+|.-+.++
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~ 29 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKD 29 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4566777889999999999988766543
No 121
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=23.12 E-value=7.8e+02 Score=24.80 Aligned_cols=95 Identities=12% Similarity=0.035 Sum_probs=48.4
Q ss_pred HHHHHhhhhhhhHhhhHHHHHhhCh--HHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhccCcceeeh
Q 011737 40 SAHIITAIVGSGVLSLAWGLAQLGW--IIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKAL 117 (478)
Q Consensus 40 ~~~l~~~~iG~GiL~lP~af~~~G~--~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~ 117 (478)
.+....+-+|.|=+. +-.++|- -..+++.++.+.+..+..+.+..-.... . ..+..|+.++-++|+.++..
T Consensus 10 g~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~v-T---g~~l~~~~r~~~~~~~~~~~ 82 (390)
T TIGR01197 10 GFLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVV-T---GLDLAEVCREHYPKVPRITL 82 (390)
T ss_pred HHHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheee-c---CCCHHHHHHHHCCCchHHHH
Confidence 344445567777665 2234442 2344555555555555554444422111 1 24899999999998776654
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhHH
Q 011737 118 GLVQYTLLCGAMVGYTITASISMV 141 (478)
Q Consensus 118 ~~~~~~~~~g~~i~y~i~~~~~l~ 141 (478)
-+.......+....-....+.-++
T Consensus 83 ~~~~~l~ii~~~~~e~~G~a~al~ 106 (390)
T TIGR01197 83 WILAELAIIATDMAEVIGTAIALN 106 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333333333333333333333
No 122
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=22.78 E-value=7.8e+02 Score=24.64 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=41.4
Q ss_pred HHHHHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhh
Q 011737 101 YRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKS 146 (478)
Q Consensus 101 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 146 (478)
...+.+...|+++.+++.+...+..+++...++...++.+..+.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d 305 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARD 305 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhcccccccc
Confidence 5677888888999999999999999999999999999999999864
No 123
>COG4769 Predicted membrane protein [Function unknown]
Probab=21.70 E-value=2.3e+02 Score=24.70 Aligned_cols=81 Identities=14% Similarity=0.066 Sum_probs=41.2
Q ss_pred HHHHHHHHccchHHH--HHHHhhhhhhhHHhhhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011737 391 MATLISMAFPFFNEV--LAFLGAIAYWPMTVYFPMEMYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQAL 468 (478)
Q Consensus 391 ~~~~ia~~~p~~~~v--i~l~Ga~~~~~l~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~i~~~~ 468 (478)
...++.-+-|++... ++.+|+++..+...+.-..+. ... ..|...-.++++|++.+......+.+-+.+--
T Consensus 93 ~m~~l~~f~~k~~S~lgiS~mGaF~hNl~QLivas~Lv---~~~----~v~l~lPll~flGivsG~~vg~~~~~~i~~v~ 165 (181)
T COG4769 93 FMYFLYQFGPKYLSLLGISVMGAFTHNLGQLIVASFLV---FTT----SVMLYLPLLIFLGIVSGTAVGILANTLIITVK 165 (181)
T ss_pred HHHHHHHcCCceEeeeehhhHHHHHHhHHHHHHHHHHH---hcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444554422 566777777777766544332 111 12223334556677766665555555555444
Q ss_pred cccccccccC
Q 011737 469 HTYKLFKFTQ 478 (478)
Q Consensus 469 ~~~~~~~~~~ 478 (478)
..++.|.++|
T Consensus 166 ~~~~~~~~a~ 175 (181)
T COG4769 166 INLKRFKAAQ 175 (181)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 124
>PLN02680 carbon-monoxide oxygenase
Probab=21.61 E-value=3.6e+02 Score=25.01 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccccccccccccCCchhHHHHHHHHHHHHHHHhhhhcccch
Q 011737 271 EVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPV 342 (478)
Q Consensus 271 ~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 342 (478)
|+.+|.+-...-...++..++|+..-..+-++ .++.+-++ -.+|+-...-+++.++.+..+..+.+|.
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfyS--lHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYS--LHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCcccccc--HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 66778888888888888888888554444333 34444333 4788888888888888888887666653
No 125
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.44 E-value=1.5e+02 Score=24.38 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011737 443 HLVNLVCLLAALAAGCGSIQGVNQALHT 470 (478)
Q Consensus 443 ~~~~~~g~~~~v~g~~~si~~i~~~~~~ 470 (478)
+..|++|+++|+.|++.-|.-.+++++.
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667888888888888776666665543
No 126
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=20.62 E-value=2.2e+02 Score=27.90 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=54.5
Q ss_pred HHHHHhHHHHHHhhc--chhHHHHHHhh----------cCCC--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcc
Q 011737 238 RIFQAIGNMAFACSY--AAILIEIQDTL----------KSSP--PEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHA 303 (478)
Q Consensus 238 ~~~~~~~~~~faf~~--~~~~~~i~~~m----------~~p~--~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~ 303 (478)
+.+..+.+..|+|.. -...|++.+-+ ++++ .+++|.-.-+......+.++=....+.|.+.||+-.
T Consensus 146 ~LlgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv~~~~~ll~P~a~pLig~Lm~Gnl~ 225 (360)
T PF03977_consen 146 HLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVVTILVGLLLPSAAPLIGMLMFGNLL 225 (360)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 677888888899843 34456666544 2221 233344444555555565556678889999999865
Q ss_pred c-cccccccccCCchhHHHHHHHHHHHHH
Q 011737 304 Q-GNILTGFGFYEPFWLIDLANFFIVVHL 331 (478)
Q Consensus 304 ~-~~il~~~~~~~~~~~~~~~~~~~~i~~ 331 (478)
. ..+.+.+.....+-+.+++.+++.+.+
T Consensus 226 rEsgv~~rLs~taqn~l~nivTi~LGl~v 254 (360)
T PF03977_consen 226 RESGVVERLSKTAQNELMNIVTIFLGLTV 254 (360)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 456666642122334455555544443
No 127
>PRK09950 putative transporter; Provisional
Probab=20.53 E-value=5.1e+02 Score=27.20 Aligned_cols=102 Identities=6% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHhhhccccC-CCCCCccccCCchhHhHHHHHHHhhCCCC-CCcchHHHHHHHHHHH
Q 011737 120 VQYTLLCGAMVGYTITASISMVAISKSNCYHKE-GHKAPCKYSYNPYMMALGIVEILLSQIPN-FHKLSWLSTIAASMSF 197 (478)
Q Consensus 120 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~pl~~~~~-l~~l~~~s~~~~~~~~ 197 (478)
.........+..|.+...|.....+...+.+.. +++++....+..|.++.+.+-..+..... ++.++..+.++.+= +
T Consensus 403 i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~alP-~ 481 (506)
T PRK09950 403 LFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLTALP-F 481 (506)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-H
Q ss_pred HHHHHHHhhhhhhhhccCCCccccc
Q 011737 198 SYAGIGMGLSFAKIVSGHGEKTTLT 222 (478)
Q Consensus 198 ~~~~i~~~~~i~~~~~~~~~~~~~~ 222 (478)
.+..+.+.+++.|...+++.+.+.+
T Consensus 482 ~~i~~l~~~s~~k~l~~d~~~~~~~ 506 (506)
T PRK09950 482 LVILLIKVYGFIRWLKQDYADVPAH 506 (506)
T ss_pred HHHHHHHHHHHHHHHhhchhcCCCC
No 128
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=20.02 E-value=5.5e+02 Score=22.08 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccccccccccccCCchhHHHHHHHHHHHHHHHhhhhcccch
Q 011737 271 EVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPV 342 (478)
Q Consensus 271 ~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 342 (478)
|+.+|.+-...-...++-.++|+..-..+-++. ++.+-++ -..|+-.+.-+++.++.+..+..+.+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fyS--lHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYS--LHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCcccc--HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 567788888888888877888886555554433 3433333 4788888888888999999988887775
Done!