Query 011737
Match_columns 478
No_of_seqs 129 out of 1261
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:18:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.8 8.1E-17 2.8E-21 164.3 27.0 366 29-434 5-380 (445)
2 3gia_A Uncharacterized protein 99.6 1.7E-13 5.9E-18 139.5 30.1 356 29-433 3-369 (444)
3 4djk_A Probable glutamate/gamm 99.5 2E-11 6.7E-16 126.6 26.9 290 26-337 5-307 (511)
4 2jln_A MHP1; hydantoin, transp 98.7 7.1E-06 2.4E-10 84.2 26.4 156 28-198 21-177 (501)
5 3dh4_A Sodium/glucose cotransp 98.2 0.0034 1.1E-07 64.7 30.9 150 31-199 19-170 (530)
6 2xq2_A Sodium/glucose cotransp 97.7 0.024 8.2E-07 59.2 28.5 150 31-199 48-199 (593)
7 2a65_A Leutaa, Na(+):neurotran 91.7 12 0.00042 37.8 31.6 255 35-302 10-309 (519)
8 4ain_A Glycine betaine transpo 57.0 1.7E+02 0.0057 29.5 18.7 107 35-142 97-223 (539)
9 1afo_A Glycophorin A; integral 29.3 94 0.0032 18.9 4.0 26 443-468 12-37 (40)
10 3tx3_A Uncharacterized protein 29.3 1.6E+02 0.0055 26.3 7.7 30 261-295 22-51 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.77 E-value=8.1e-17 Score=164.27 Aligned_cols=366 Identities=11% Similarity=-0.006 Sum_probs=206.3
Q ss_pred CCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHh
Q 011737 29 RSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNY 108 (478)
Q Consensus 29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~ 108 (478)
+++|+.+.+++++..+++++|+|++.+|....+.|. .+++.+++.+++.........|.... .|. ..++.+..++.
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~-~p~--~Gg~y~~~~~~ 80 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFL-DPS--PGGSYAYARRC 80 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHH-CCC--TTTHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHcc-CCC--CCCchhhHHhH
Confidence 456889999999999999999999999999888896 37777788888888888887775332 221 23677789999
Q ss_pred ccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhH-hHHHHHHHhhCCCCCCcchH
Q 011737 109 LGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM-ALGIVEILLSQIPNFHKLSW 187 (478)
Q Consensus 109 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~pl~~~~~l~~l~~ 187 (478)
+||+.+++..+..++........+....++++..+.+. . ..+...+.+ +..+++.-....+..+...+
T Consensus 81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----L------KDPWVLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG-----G------GSHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc-----c------cccHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 99999999999999888777777777777766544321 0 000111111 11111222222344444445
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCC
Q 011737 188 LSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSP 267 (478)
Q Consensus 188 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 267 (478)
++.+.....+...++++...+.+ .++... .+ +|.+ ....+..++..++....|+|.|.+....+.+|+|||
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~---~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p- 220 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFW---FRGETY-MA--AWNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP- 220 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTT---CCCCCC-CC--C-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hChhhc-cc--ccCc--cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc-
Confidence 54444433332221121211111 111110 01 1110 111223467889999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccc----ccccccccCCchhHHHHHHHHHHHHHHHhhhhcccchH
Q 011737 268 PEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQG----NILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVF 343 (478)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 343 (478)
+|+.+|++..+..++.++|+...+......+.+... ....-+......+...+..+...+..+.+.--......
T Consensus 221 --~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s 298 (445)
T 3l1l_A 221 --KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAG 298 (445)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred --cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999998887766666543211 11111100012334445555555555554433333333
Q ss_pred HHHHHHhhc-cCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHhhhhhhhHH
Q 011737 344 GVVESWAGN-RWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAF----PFFNEVLAFLGAIAYWPMT 418 (478)
Q Consensus 344 ~~l~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~----p~~~~vi~l~Ga~~~~~l~ 418 (478)
+.+...-.+ ..| ++..+.+..+.| ...+.+..++..+ ..+.... ..++.+.++.+ ....+.
T Consensus 299 R~~~~~a~dg~lP--~~~~~~~~~~~P---------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ 364 (445)
T 3l1l_A 299 QTAKAAADDGLFP--PIFARVNKAGTP---------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSV--IFTLVP 364 (445)
T ss_dssp HHHHHHHHTTSSC--GGGGCCCTTCCC---------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHH--HHHHHH
T ss_pred HHHHHHHhCCCCc--HHHHhcCCCCCC---------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHH--HHHHHH
Confidence 333332221 122 111221111233 2222222222111 1111112 34566666655 345788
Q ss_pred hhhhHHHHHHHhcCCC
Q 011737 419 VYFPMEMYIVRKEIKR 434 (478)
Q Consensus 419 fi~P~l~~~~~~~~~~ 434 (478)
|+++++.+++.++++.
T Consensus 365 y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 365 YLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHhhcCc
Confidence 9999999888876543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.64 E-value=1.7e-13 Score=139.50 Aligned_cols=356 Identities=10% Similarity=0.016 Sum_probs=200.8
Q ss_pred CCcccccHHHHHHHHHhhhhhhhHhhhHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHH
Q 011737 29 RSRRTGTVWTASAHIITAIVGSGVLSLAWG-LAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKN 107 (478)
Q Consensus 29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~ 107 (478)
+++|+.+.++.++..+++++|+|++.+|.. ...+|. .+++.+++.+++.......+.|.... .|. .....+.+++
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~-~P~--~Gg~y~~~~~ 78 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAK-IVS--NAGPIAFIHK 78 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTT-CCC--TTTHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCC--CCcHHHhHHH
Confidence 357889999999999999999999987644 556675 56777788888888888888885432 231 1366788999
Q ss_pred hccCcc-eeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhH---hHHHHHHHhhCCCCCC
Q 011737 108 YLGGRK-YKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM---ALGIVEILLSQIPNFH 183 (478)
Q Consensus 108 ~~G~~~-~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~pl~~~~~l~ 183 (478)
.+|++. ...+.+..++.....+..+....++++..+++. .+..++.. +...++.-+...+..+
T Consensus 79 ~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~in~~g~~ 145 (444)
T 3gia_A 79 AIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA-------------PINTFNIAITEIGIVAFFTALNFFGSK 145 (444)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------CCCHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999962 223456667777777777777888888766431 01111211 1111222222334445
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhh
Q 011737 184 KLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTL 263 (478)
Q Consensus 184 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 263 (478)
...++........+...++.+...+.+. ++.+ ..+ . ..+.++.+++.++....|+|.|.+.+....+|+
T Consensus 146 ~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~--~~~-----~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~ 214 (444)
T 3gia_A 146 AVGRAEFFIVLVKLLILGLFIFAGLITI---HPSY--VIP-----D-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHI 214 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGG--TSC-----C-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc---Chhh--cCC-----C-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc
Confidence 5555554444433332222222222221 1111 111 0 112333467788888999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccc----cc-cccccccCCchhHHHHHHHHHHHHHHHhhhhc
Q 011737 264 KSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQ----GN-ILTGFGFYEPFWLIDLANFFIVVHLLGAYQVL 338 (478)
Q Consensus 264 ~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~----~~-il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 338 (478)
||| +|+.+|++..+..++.++|+...+......+.+.- ++ +..........+...+..+...+..+.+..-.
T Consensus 215 k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 291 (444)
T 3gia_A 215 ENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNAT 291 (444)
T ss_dssp SSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 47899999999999999999877765555443210 10 10000000012333344555555555544433
Q ss_pred ccchHHHHHHHhhc-cCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhH
Q 011737 339 AQPVFGVVESWAGN-RWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPM 417 (478)
Q Consensus 339 ~~p~~~~l~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~~~~l 417 (478)
.....+.+...-.+ ..|+ .+ .+.+ .+.| ...+.... +++.++... .+++.+.++.+. +..+
T Consensus 292 ~~~~sR~l~a~a~dg~lP~-~f-~~~~-~~~P---------~~a~~~~~---~~~~~~~~~-~~~~~l~~~~~~--~~~~ 353 (444)
T 3gia_A 292 IYGGANVAYSLAKDGELPE-FF-ERKV-WFKS---------TEGLYITS---ALGVLFALL-FNMEGVASITSA--VFMV 353 (444)
T ss_dssp HTTTHHHHHHHHHHSSCCS-SC-CTTS-CCSC---------THHHHHHH---HHHHHHHHH-SCHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHCCCCCH-HH-hCCC-CCCC---------cHHHHHHH---HHHHHHHHH-cCHHHHHHHHHH--HHHH
Confidence 33333333333222 2232 11 1111 1123 22222221 122222222 367777776553 3478
Q ss_pred HhhhhHHHHHHHhcCC
Q 011737 418 TVYFPMEMYIVRKEIK 433 (478)
Q Consensus 418 ~fi~P~l~~~~~~~~~ 433 (478)
.|.++.+.+++.++++
T Consensus 354 ~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 354 IYLFVILSHYILIDEV 369 (444)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhhhcC
Confidence 8888888888877654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.46 E-value=2e-11 Score=126.55 Aligned_cols=290 Identities=10% Similarity=-0.014 Sum_probs=154.5
Q ss_pred CCCCCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHhhc-CCcCccccccHHH
Q 011737 26 DDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISL-YTSGLLAECYR-APNSVKRNYTYRD 103 (478)
Q Consensus 26 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~-~t~~~l~~~~~-~~~~~~~~~sy~~ 103 (478)
++++.+|+.+.++.+...++.++| +..+|. ....|.. .++..++.+.+.. .....+.|... +..| . .....
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~--GG~y~ 77 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-E--GGVFA 77 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-C--CChhh
Confidence 345567889999999999999996 567775 4667743 3333333333322 25555666422 0122 1 26677
Q ss_pred HHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhH-hHHHHHHHhhCCCCC
Q 011737 104 AVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM-ALGIVEILLSQIPNF 182 (478)
Q Consensus 104 l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~pl~~~~~l 182 (478)
.+++.+||+.+++..+..++.......++....++.+..++. .+..+ ..++..+.+ +..+++.-+...+..
T Consensus 78 ~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~-----~~~~~~~~~~~~~~~~~~~in~~g~ 149 (511)
T 4djk_A 78 WVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK---WPALN-----EDPITKTIAALIILWALALTQFGGT 149 (511)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT---CGGGT-----SCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred hHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Ccccc-----cCcHHHHHHHHHHHHHHHHHHHhCh
Confidence 899999999999999998888877777777766666654321 01100 001111111 111222223334556
Q ss_pred CcchHHHHHHHHHH-HHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHH
Q 011737 183 HKLSWLSTIAASMS-FSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQD 261 (478)
Q Consensus 183 ~~l~~~s~~~~~~~-~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 261 (478)
+....+..+..... +...++++...+.....+++...+ .++++ ..+.....+...++....|+|.|.+....+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~ 225 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIE---MDSKT-FFPDFSKVGTLVVFVAFILSYMGVEASATHVN 225 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC---------------C-CCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---Ccccc-cCCCcccchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66666655443321 111111222222221111111000 00000 00000111233456778999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccc---ccc----cccccCC--chhHHHHHHHHHHHHHH
Q 011737 262 TLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQG---NIL----TGFGFYE--PFWLIDLANFFIVVHLL 332 (478)
Q Consensus 262 ~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~---~il----~~~~~~~--~~~~~~~~~~~~~i~~~ 332 (478)
|+||| +|+.+|++..++.++.++|++..+.-....+++... ... .-+.... ..+...+..+...+..+
T Consensus 226 E~k~P---~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 302 (511)
T 4djk_A 226 EMSNP---GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVL 302 (511)
T ss_dssp SSSCC---TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHH
T ss_pred hccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 99999 478999999999999999998887766666554321 110 0011111 24555666666666666
Q ss_pred Hhhhh
Q 011737 333 GAYQV 337 (478)
Q Consensus 333 ~s~pl 337 (478)
.+...
T Consensus 303 ~~~~~ 307 (511)
T 4djk_A 303 AEIAS 307 (511)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.68 E-value=7.1e-06 Score=84.21 Aligned_cols=156 Identities=9% Similarity=0.033 Sum_probs=98.2
Q ss_pred CCCcccccHHHHHHHHHhhhhhhhHhhhHHHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHH
Q 011737 28 GRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQ-LGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVK 106 (478)
Q Consensus 28 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~-~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~ 106 (478)
++++|+.++++-+..-++..++.+.+.+...+.. .++..+++..++-.++....+.++...-.+. ..+|.++.|
T Consensus 21 p~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~-----Gl~~~v~~R 95 (501)
T 2jln_A 21 RYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW-----GINFTVAAR 95 (501)
T ss_dssp CGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-----CCCHHHHTT
T ss_pred ChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-----CCChhhhhH
Confidence 3445667778777777777777777766655544 2344455554444444443333333321111 257999999
Q ss_pred HhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcch
Q 011737 107 NYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLS 186 (478)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~ 186 (478)
..||+++..+..+...+.++|-...-....++.++.+++... +. .+.....+++.++.++.. ...++.++
T Consensus 96 ~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g~--------~~~~v~~~i~~~l~~~~~-~~G~~~i~ 165 (501)
T 2jln_A 96 MPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-GF--------TNLPLWIVIFGAIQVVTT-FYGITFIR 165 (501)
T ss_dssp TTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc--------chHHHHHHHHHHHHHHHH-HhCHHHHH
Confidence 999999999999999999999998888888999988764321 10 001123344455555554 55577777
Q ss_pred HHHHHHHHHHHH
Q 011737 187 WLSTIAASMSFS 198 (478)
Q Consensus 187 ~~s~~~~~~~~~ 198 (478)
++..+.....+.
T Consensus 166 ~~~~~~~p~~~i 177 (501)
T 2jln_A 166 WMNVFASPVLLA 177 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776665544
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.15 E-value=0.0034 Score=64.73 Aligned_cols=150 Identities=11% Similarity=0.145 Sum_probs=81.9
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhc
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYL 109 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~ 109 (478)
.|+.+++...+.+..+.+++. .+++|-..-..|+......+. .++........+..-.++. +..|.+|.-++-|
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~----~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK----GIYTIPEFVEKRF 93 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT----TCCSHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHc----CCccHHHHHHHHc
Confidence 567788999999988888887 557998887788632211111 1111111122222222222 2579999999999
Q ss_pred cCcceeehHHHHHHH-HhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHH
Q 011737 110 GGRKYKALGLVQYTL-LCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWL 188 (478)
Q Consensus 110 G~~~~~~~~~~~~~~-~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~ 188 (478)
|++.+.+..+...+. .+..+.+-+...+..++.+++ ++....+++.+++....+....++...+.
T Consensus 94 g~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~aV~~T 159 (530)
T 3dh4_A 94 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVVWT 159 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHHHHTTC------CCSH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 998877666543322 222222333334555555432 22223344455555667778889999988
Q ss_pred HHHHHHHHHHH
Q 011737 189 STIAASMSFSY 199 (478)
Q Consensus 189 s~~~~~~~~~~ 199 (478)
-.+..+.++.-
T Consensus 160 D~iQ~~im~~g 170 (530)
T 3dh4_A 160 DVIQVFFLVLG 170 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887776543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.73 E-value=0.024 Score=59.20 Aligned_cols=150 Identities=10% Similarity=0.136 Sum_probs=80.4
Q ss_pred cccccHHHHHHHHHhhhhhhh-HhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhc
Q 011737 31 RRTGTVWTASAHIITAIVGSG-VLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYL 109 (478)
Q Consensus 31 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~ 109 (478)
.|+.+++...+.+..+.+++. .++.|-...+.|+......+. ...........+..-.++. +..|.+|.-++=|
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~----~~~T~~e~l~~Rf 122 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK----GIYTIPEFVEKRF 122 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT----TCCSHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC----CCCCcHHHHHHHc
Confidence 467788889999988888777 457888777788532211111 0100111112222222222 2479999999999
Q ss_pred cCcceeehHHHHHH-HHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCCcchHH
Q 011737 110 GGRKYKALGLVQYT-LLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWL 188 (478)
Q Consensus 110 G~~~~~~~~~~~~~-~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~~l~~~ 188 (478)
|++.+.+..+...+ ..+.....-+...+..++.+++ ++....+++.++++...+....++...+.
T Consensus 123 g~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~av~~T 188 (593)
T 2xq2_A 123 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVVWT 188 (593)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHTTC---CCHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 98877666544332 2222223333344556665542 11222334455555666778888888888
Q ss_pred HHHHHHHHHHH
Q 011737 189 STIAASMSFSY 199 (478)
Q Consensus 189 s~~~~~~~~~~ 199 (478)
-.+..+..+..
T Consensus 189 D~iQ~iiml~~ 199 (593)
T 2xq2_A 189 DVIQVFFLVLG 199 (593)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777765543
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=91.73 E-value=12 Score=37.78 Aligned_cols=255 Identities=13% Similarity=0.030 Sum_probs=117.1
Q ss_pred cHHHHHHHHHhhhhhhh-HhhhHHHHHhhCh----HHHHHHHHHHHHHHHHHHHHHHHhhc-CCcCccccccHHHHHHHh
Q 011737 35 TVWTASAHIITAIVGSG-VLSLAWGLAQLGW----IIGIATLVIFSGISLYTSGLLAECYR-APNSVKRNYTYRDAVKNY 108 (478)
Q Consensus 35 s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~----~~g~~~l~~~~~~~~~t~~~l~~~~~-~~~~~~~~~sy~~l~~~~ 108 (478)
|-.+-++..+++.+|-| +.-.||-..+-|- ++=+++++++++=..+.=..+.+-.. +.+.+ ....|+++
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~-~i~a~~~l---- 84 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGT-TPAIFYLL---- 84 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCS-HHHHHHHH----
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCC-HHHHHHHh----
Confidence 44677888899999999 8889999877662 11122222222222222222222000 11111 01233333
Q ss_pred ccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCC---C-CC--Cc--------------------cccC
Q 011737 109 LGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEG---H-KA--PC--------------------KYSY 162 (478)
Q Consensus 109 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~---~-~~--~~--------------------~~~~ 162 (478)
..++....+++...+..+..++-|.++.+-.+..+...+..+ .+ . .. .+ +...
T Consensus 85 ~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~-lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~ 163 (519)
T 2a65_A 85 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGL-VPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILK 163 (519)
T ss_dssp SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCC
T ss_pred cCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccccCCcccccCcHHHHHHHHHCCCCCcccccC
Confidence 222122334555566666666667776666666555443211 11 0 00 00 0000
Q ss_pred -CchhHh---HHHHHHHhhCCCCC-CcchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCccccccccc--ccCcchhhh
Q 011737 163 -NPYMMA---LGIVEILLSQIPNF-HKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEI--GLDLTAADK 235 (478)
Q Consensus 163 -~~~~~l---~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 235 (478)
++.+++ ...++.-++..|.+ +...+.+.+...+.+...++++ +....-++|......+..+ .||+....+
T Consensus 164 ~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~---ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~ 240 (519)
T 2a65_A 164 PSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLV---IRVFLLETPNGTAADGLNFLWTPDFEKLKD 240 (519)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHH---HHHTTCEETTEEHHHHHHHHHSCCTTSTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHhcCCCCchhHHHHHHHHhcCCHHHhCC
Confidence 112221 12223345567888 6688888777665443322222 2222111210001111111 112222211
Q ss_pred hhHHHHHhHHHHHHhh-cchhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHH-----HhhhhhhhhcccCc
Q 011737 236 TWRIFQAIGNMAFACS-YAAILIEIQDTLKSSPPEQEVMKKANTIATFTATTLY-----LMCGCLGYAALGNH 302 (478)
Q Consensus 236 ~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~lY-----~~~g~~gy~~fg~~ 302 (478)
..-...|.+...|+.+ |...+.+.-+.+++. +|..|........-+..- .+++.+||.++|.+
T Consensus 241 ~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~----~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~ 309 (519)
T 2a65_A 241 PGVWIAAVGQIFFTLSLGFGAIITYASYVRKD----QDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 309 (519)
T ss_dssp HHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTT----SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHhhhhcccCCC----cChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1234788999999994 556666666666654 566665433333333222 23444566555544
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=57.00 E-value=1.7e+02 Score=29.54 Aligned_cols=107 Identities=8% Similarity=0.001 Sum_probs=55.9
Q ss_pred cHHHHHHHHHhhhhhhhHhhhH----HHH-Hh--hC-----hHHHHHHHHHHHHHHHHHHHHHHHh------hcCCcC-c
Q 011737 35 TVWTASAHIITAIVGSGVLSLA----WGL-AQ--LG-----WIIGIATLVIFSGISLYTSGLLAEC------YRAPNS-V 95 (478)
Q Consensus 35 s~~~a~~~l~~~~iG~GiL~lP----~af-~~--~G-----~~~g~~~l~~~~~~~~~t~~~l~~~------~~~~~~-~ 95 (478)
|.++-+.+++.+-+|.|++.-. ..- .+ .| .-.+....++=+.+..|+.+.+.-. +|+..| .
T Consensus 97 S~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~~pl~ 176 (539)
T 4ain_A 97 RTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGRKQL 176 (539)
T ss_dssp CHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTCCCSC
T ss_pred cchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4456678899999999988422 211 10 01 2234555555555555555554442 333333 2
Q ss_pred cccccHHHHHHH-hccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHH
Q 011737 96 KRNYTYRDAVKN-YLGGRKYKALGLVQYTLLCGAMVGYTITASISMVA 142 (478)
Q Consensus 96 ~~~~sy~~l~~~-~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~ 142 (478)
-|..-|+=++++ .-|+.| .++|+.-.+...+....-+-+....++.
T Consensus 177 iss~l~PllG~r~~~G~~G-~~IDilav~atv~GvatSLGlg~~Qi~~ 223 (539)
T 4ain_A 177 LSSAFVPLIGEKGAEGWLG-KLIDILAIIATVFGTACSLGLGALQIGA 223 (539)
T ss_dssp TTGGGHHHHHHHHTTSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhhcCCCccCCcch-hhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 233456677777 666655 5667755554444444344443333433
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=29.34 E-value=94 Score=18.89 Aligned_cols=26 Identities=12% Similarity=-0.052 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011737 443 HLVNLVCLLAALAAGCGSIQGVNQAL 468 (478)
Q Consensus 443 ~~~~~~g~~~~v~g~~~si~~i~~~~ 468 (478)
...+++|+..|+.|+...|.-.++.+
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999887776666554
No 10
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=29.33 E-value=1.6e+02 Score=26.27 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=20.2
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011737 261 DTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLG 295 (478)
Q Consensus 261 ~~m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~g 295 (478)
+.+.+| ++++.+.....+..++|.......
T Consensus 22 ~~i~~p-----~lr~~vl~Pllinl~L~~~~~~~~ 51 (249)
T 3tx3_A 22 ELIRTK-----GLRRYVVVPILTNLILFSLAFTWL 51 (249)
T ss_dssp HHHTST-----TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455776 677777788888877776554433
Done!