BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011738
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 260 bits (665), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 133/263 (50%), Positives = 173/263 (65%), Gaps = 4/263 (1%)
Query: 42 SSENEDLVTNLPGQPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGP 101
S D + LPGQP VDF Y+GY+TV+E GR+LFY EA Q PLVLWLNGGP
Sbjct: 4 SGHAADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGP 63
Query: 102 GCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEM 161
GCSSV YGA++E+G F V G GL N Y WNK AN+LFL+SP GVGFSY+NT++D
Sbjct: 64 GCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYT 123
Query: 162 LGDDFTANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPSLYID 221
GD+ TA+DSY FL KWF +FP Y+ R FYIAGESYAG Y+PEL++L+H R+K+P I+
Sbjct: 124 SGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSKNP--VIN 180
Query: 222 LKGILLGNPETSTAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECSDAVA 281
LKG ++GN D+ G ++ W+H +VSD+T++ + C + S S C A
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATD 239
Query: 282 EVLKQYKEIDIYSIYTSVCSSNS 304
+ ID+YS+YT VC+ S
Sbjct: 240 VATAEQGNIDMYSLYTPVCNITS 262
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/260 (50%), Positives = 172/260 (66%), Gaps = 4/260 (1%)
Query: 42 SSENEDLVTNLPGQPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGP 101
S D + LPGQP VDF Y+GY+TV+E GR+LFY EA Q PLVLWLNGGP
Sbjct: 4 SGHAADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGP 63
Query: 102 GCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEM 161
GCSSV YGA++E+G F V G GL N Y WNK AN+LFL+SP GVGFSY+NT++D
Sbjct: 64 GCSSVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYT 123
Query: 162 LGDDFTANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPSLYID 221
GD+ TA+DSY FL KWF +FP Y+ R FYIAGESYAG Y+PEL++L+H R+K+P I+
Sbjct: 124 SGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSKNP--VIN 180
Query: 222 LKGILLGNPETSTAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECSDAVA 281
LKG ++GN D+ G ++ W+H +VSD+T++ + C + S S C A
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATD 239
Query: 282 EVLKQYKEIDIYSIYTSVCS 301
+ ID+YS+YT VC+
Sbjct: 240 VATAEQGNIDMYSLYTPVCN 259
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 171/255 (67%), Gaps = 4/255 (1%)
Query: 47 DLVTNLPGQPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGPGCSSV 106
D + LPGQP VDF Y+GY+TV+E GR+LFY EA Q PLVLWLNGGPGCSSV
Sbjct: 5 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 64
Query: 107 GYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEMLGDDF 166
YGA++E+G F V G GL N Y WNK AN+LFL+SP GVGFSY+NT++D GD+
Sbjct: 65 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 124
Query: 167 TANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPSLYIDLKGIL 226
TA+DSY FL KWF +FP Y+ R FYIAGESYAG Y+PEL++L+H R+K+P I+LKG +
Sbjct: 125 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSKNPV--INLKGFM 181
Query: 227 LGNPETSTAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECSDAVAEVLKQ 286
+GN D+ G ++ W+H +VSD+T++ + C + S S C A +
Sbjct: 182 VGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVATAE 240
Query: 287 YKEIDIYSIYTSVCS 301
ID+YS+YT VC+
Sbjct: 241 QGNIDMYSLYTPVCN 255
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 171/255 (67%), Gaps = 4/255 (1%)
Query: 47 DLVTNLPGQPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGPGCSSV 106
D + LPGQP VDF Y+GY+TV+E GR+LFY EA Q PLVLWLNGGPGCSSV
Sbjct: 4 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 63
Query: 107 GYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEMLGDDF 166
YGA++E+G F V G GL N Y WNK AN+LFL+SP GVGFSY+NT++D GD+
Sbjct: 64 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 123
Query: 167 TANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPSLYIDLKGIL 226
TA+DSY FL KWF +FP Y+ R FYIAGESYAG Y+PEL++L+H R+K+P I+LKG +
Sbjct: 124 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSKNPV--INLKGFM 180
Query: 227 LGNPETSTAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECSDAVAEVLKQ 286
+GN D+ G ++ W+H +VSD+T++ + C + S S C A +
Sbjct: 181 VGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVATAE 239
Query: 287 YKEIDIYSIYTSVCS 301
ID+YS+YT VC+
Sbjct: 240 QGNIDMYSLYTPVCN 254
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 129/262 (49%), Positives = 174/262 (66%), Gaps = 7/262 (2%)
Query: 41 LSSENEDLVTNLPGQPN-VDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKP-LVLWLN 98
L + +D + LPGQPN V F Y GYVT++++NGRAL+YWF EA T LVLWLN
Sbjct: 2 LQQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLN 61
Query: 99 GGPGCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTND 158
GGPGCSS+G GA QE+G F V T+G L N YAWNK AN+LF ESP GVGFSYSNT++D
Sbjct: 62 GGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSD 121
Query: 159 YEMLGDDFTANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPSL 218
M GDD A D+YTFL KWF +FP Y R FYIAGES G +IP+L+++++ RN++ S
Sbjct: 122 LSM-GDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVY-RNRNNSP 177
Query: 219 YIDLKGILLGNPETSTAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECSD 278
+I+ +G+L+ + T+ ED G+ + W H ++SDET L+ C +S + EC++
Sbjct: 178 FINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCP-GTSFMHPTPECTE 236
Query: 279 AVAEVLKQYKEIDIYSIYTSVC 300
+ L + I+ Y+IYT C
Sbjct: 237 VWNKALAEQGNINPYTIYTPTC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 211 bits (538), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 150/455 (32%), Positives = 236/455 (51%), Gaps = 63/455 (13%)
Query: 45 NEDLVTNLPG---QPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGP 101
++D + LPG QP+ FR Y+GY+ + L YWF E+ P+ P+VLWLNGGP
Sbjct: 3 DQDEIQRLPGLAKQPS--FRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGP 58
Query: 102 GCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSN----TTN 157
GCSS+ G E GPFLV DG L++NPY+WN AN+L+LESP GVGFSYS+ TN
Sbjct: 59 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN 117
Query: 158 DYEMLGDDFTANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPS 217
D E+ +F A L +F FP Y+ ++ GESYAG YIP L L+ +DPS
Sbjct: 118 DTEVAQSNFEA------LQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM---QDPS 168
Query: 218 LYIDLKGILLGNPETSTAEDWQGLVDYAWSHAVVSD------ETHKIILRTCDFNSSDPW 271
+ +L+G+ +GN +S ++ LV +A+ H ++ + +TH C+F +
Sbjct: 169 M--NLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 226
Query: 272 SSDECSDAVAEVLKQYKE--IDIYSIYT----SVCSSNSLESSQLLMKRTSKMMPR---- 321
EC + EV + ++IY++Y V S E ++++ + R
Sbjct: 227 ---ECVTNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLK 283
Query: 322 ------IMGGYD------PCLDNYAKAFY-NRLDVQKALHVSDGHLLRNWSICNTTMYEG 368
++ D PC + A + Y N V+KAL++ + L W +CN +
Sbjct: 284 RMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQ--LPQWDMCNFLVNLQ 341
Query: 369 WPQPKPSVLPIYTKLIEA-GLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWYHQ 427
+ + S+ Y KL+ + +I +Y+GD D + + ++SL + RPW +
Sbjct: 342 YRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVK 401
Query: 428 -----KQVGGWVQEYAGLTFVTVRGAGHAVPVFKP 457
+Q+ G+V+E++ + F+T++GAGH VP KP
Sbjct: 402 YGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKP 436
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 152/268 (56%), Gaps = 34/268 (12%)
Query: 45 NEDLVTNLPG---QPNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGP 101
++D + LPG QP+ FR Y+GY+ + + L YWF E+ P+ P+VLWLNGGP
Sbjct: 5 DQDEIQRLPGLAKQPS--FRQYSGYLKGS--GSKHLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 102 GCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSN----TTN 157
GCSS+ G E GPFLV DG L++NPY+WN AN+L+LESP GVGFSYS+ TN
Sbjct: 61 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN 119
Query: 158 DYEMLGDDFTANDSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRNKDPS 217
D E+ +F A L +F FP Y+ ++ GESYAG YIP L L+ +DPS
Sbjct: 120 DTEVAQSNFEA------LQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM---QDPS 170
Query: 218 LYIDLKGILLGNPETSTAEDWQGLVDYAWSHAVVSD------ETHKIILRTCDFNSSDPW 271
+ +L+G+ +GN +S ++ LV +A+ H ++ + +TH C+F +
Sbjct: 171 M--NLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 228
Query: 272 SSDECSDAVAEVLKQYKE--IDIYSIYT 297
EC + EV + ++IY++Y
Sbjct: 229 ---ECVTNLQEVARIVGNSGLNIYNLYA 253
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 324 GGYDPCLDNYAKAFYNRLDVQKALHVS-DGHLLRNWSICNTTMYEGWPQPKPSVLPIYTK 382
G YDPC + Y+ A+YNR DVQ ALH + G + W+ C+ T+ W S+LPIY +
Sbjct: 2 GSYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRE 61
Query: 383 LIEAGLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWYHQKQVGGWVQEYAGLTF 442
LI AGLRIW++SGDTD VP+ +TRY + +LGL T SW PWY ++VGGW Q Y GLT
Sbjct: 62 LIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTL 121
Query: 443 VTVRGAGHAVPVFKPXXXXXXXXXXXXGDPLP 474
V+VRGAGH VP+ +P G P+P
Sbjct: 122 VSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Query: 326 YDPCLDNYAKAFYNRLDVQKALHVS-DGHLLRNWSICNTTMYEGWPQPKPSVLPIYTKLI 384
YDPC + Y+ A+YNR DVQ ALH + G + W+ C+ T+ W S+LPIY +LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 385 EAGLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWYHQKQVGGWVQEYAGLTFVT 444
AGLRIW++SGDTD VP+ +TRY + +LGL T SW PWY ++VGGW Q Y GLT V+
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 445 VRGAGHAVPVFKPXXXXXXXXXXXXGDPLP 474
VRGAGH VP+ +P G P+P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Query: 326 YDPCLDNYAKAFYNRLDVQKALHVS-DGHLLRNWSICNTTMYEGWPQPKPSVLPIYTKLI 384
YDPC + Y+ A+YNR DVQ ALH + G + W+ C+ T+ W S+LPIY +LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 385 EAGLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWYHQKQVGGWVQEYAGLTFVT 444
AGLRIW++SGDTD VP+ +TRY + +LGL T SW PWY ++VGGW Q Y GLT V+
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 445 VRGAGHAVPVFKPXXXXXXXXXXXXGDPLP 474
VRGAGH VP+ +P G P+P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Query: 326 YDPCLDNYAKAFYNRLDVQKALHVS-DGHLLRNWSICNTTMYEGWPQPKPSVLPIYTKLI 384
YDPC + Y+ A+YNR DVQ ALH + G + W+ C+ T+ W S+LPIY +LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 385 EAGLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWYHQKQVGGWVQEYAGLTFVT 444
AGLRIW++SGDTD VP+ +TRY + +LGL T SW PWY ++VGGW Q Y GLT V+
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 445 VRGAGHAVPVFKPXXXXXXXXXXXXGDPLP 474
VRGAGH VP+ +P G P+P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 97/154 (62%), Gaps = 4/154 (2%)
Query: 326 YDPCLDNYAKAFYNRLDVQKALHVS-DGHLLRNWSICNTTMYEGWPQPKPSVLPIYTKLI 384
YDPC + + N +VQ ALH + G + W++C+ T+++ W Q +LP+Y +LI
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 385 EAGLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWYH---QKQVGGWVQEYAGLT 441
+AGLR+W+YSGDTD VPV STR L +L L + SW PWY +++VGGW +Y GLT
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLT 123
Query: 442 FVTVRGAGHAVPVFKPXXXXXXXXXXXXGDPLPS 475
+VTVRGAGH VPV +P G+P+P+
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMPA 157
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/437 (28%), Positives = 200/437 (45%), Gaps = 79/437 (18%)
Query: 56 PNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGPGCSSVGYGATQEIG 115
PNV Y GY+ V E + F+W +E+ P + P++LWLNGGPGCSS+ G E+G
Sbjct: 12 PNV--TQYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELG 67
Query: 116 PFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEMLGDDFTANDSYTFL 175
P + D + + NPY+WN A ++FL+ P+ VGFSYS ++ + D Y FL
Sbjct: 68 PSSIGPDLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVA---AGKDVYNFL 123
Query: 176 HKWFLKFPSY--RRRTFYIAGESYAGRYIPEL-TELIHDRNKDPSLYIDLKGILLGNPET 232
+F +FP Y + + F+IAGESYAG YIP +E++ ++++ +L +L+GN T
Sbjct: 124 ELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLT 179
Query: 233 STAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECS---DAVAEVLKQYKE 289
L Y + + E + + S+ECS D++ L +
Sbjct: 180 DP------LTQYNYYEPMACGEGGEPSVL----------PSEECSAMEDSLERCLGLIES 223
Query: 290 I-DIYSIYTSVCSSNSLESSQLL-MKRTSKMMPRIMG---GYDPC------LDNYAKAFY 338
D S+++ V ++ ++QL +RT + + I G + C +D+Y Y
Sbjct: 224 CYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDY 283
Query: 339 NRLDVQKALHVSDGHLLR-NWSICNTTMYEG-WPQPKPSVLPIYTKLIEAGLRIWIYSGD 396
V++A+ H N+ I ++ G W +P + + T L+ L I +Y+GD
Sbjct: 284 ----VKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAV---TDLLNQDLPILVYAGD 336
Query: 397 TDGRVPVLSTRYCLNSLGLSITKSWRPWYHQK----------------QVGGWVQEYAGL 440
D + N LG PW + + +V G V+ Y
Sbjct: 337 KD---------FICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHF 387
Query: 441 TFVTVRGAGHAVPVFKP 457
T++ V GH VP P
Sbjct: 388 TYLRVFNGGHMVPFDVP 404
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 198/437 (45%), Gaps = 79/437 (18%)
Query: 56 PNVDFRHYAGYVTVNEHNGRALFYWFYEAMTRPQEKPLVLWLNGGPGCSSVGYGATQEIG 115
PNV Y GY+ V E + F+W +E+ P + P++LWLNGGPGCSS+ G +G
Sbjct: 12 PNV--TQYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALG 67
Query: 116 PFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDYEMLGDDFTANDSYTFL 175
P + D + + NPY+WN A ++FL+ P+ VGFSYS ++ + D Y FL
Sbjct: 68 PSSIGPDLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVA---AGKDVYNFL 123
Query: 176 HKWFLKFPSY--RRRTFYIAGESYAGRYIPEL-TELIHDRNKDPSLYIDLKGILLGNPET 232
+F +FP Y + + F+IAG SYAG YIP +E++ ++++ +L +L+GN T
Sbjct: 124 ELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLT 179
Query: 233 STAEDWQGLVDYAWSHAVVSDETHKIILRTCDFNSSDPWSSDECS---DAVAEVLKQYKE 289
L Y + + E + + S+ECS D++ L +
Sbjct: 180 DP------LTQYNYYEPMACGEGGEPSVL----------PSEECSAMEDSLERCLGLIES 223
Query: 290 I-DIYSIYTSVCSSNSLESSQLL-MKRTSKMMPRIMG---GYDPC------LDNYAKAFY 338
D S+++ V ++ ++QL +RT + + I G + C +D+Y Y
Sbjct: 224 CYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDY 283
Query: 339 NRLDVQKALHVSDGHLLR-NWSICNTTMYEG-WPQPKPSVLPIYTKLIEAGLRIWIYSGD 396
V++A+ H N+ I ++ G W +P + + T L+ L I +Y+GD
Sbjct: 284 ----VKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAV---TDLLNQDLPILVYAGD 336
Query: 397 TDGRVPVLSTRYCLNSLGLSITKSWRPWYHQK----------------QVGGWVQEYAGL 440
D + N LG PW + + +V G V+ Y
Sbjct: 337 KD---------FICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHF 387
Query: 441 TFVTVRGAGHAVPVFKP 457
T++ V GH VP P
Sbjct: 388 TYLRVFNGGHMVPFDVP 404
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 122/464 (26%), Positives = 208/464 (44%), Gaps = 82/464 (17%)
Query: 49 VTNLPGQPNVDFRHYAGYVTV-----NEHNGRALFYWFYEAMTRPQ----EKPLVLWLNG 99
++ +P N+ H AG++ + +E + L Y+F++ ++PL++WLNG
Sbjct: 17 LSEVPDPSNIPQMH-AGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNG 75
Query: 100 GPGCSSVGYGATQEIGPFLVDTDGRGLQFNPYAWNKEANMLFLESPIGVGFSYSNTTNDY 159
GPGCSS+ GA E GPF V++DG+ L N +W + ++LF++ P G GFS ++
Sbjct: 76 GPGCSSMD-GALVESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEG 133
Query: 160 EMLGDDFTAN------DSYTFLHKWFLKFPSYRRRTFYIAGESYAGRYIPELTELIHDRN 213
++ + F + FL +F FP R ++GESYAG+YIP I + N
Sbjct: 134 KIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHN 193
Query: 214 K----DPSLYIDLKGILLGN----PETSTAEDW-----QGLVDYA---WSHAVVSDETHK 257
K D Y DLK +L+GN P T + + L+D + + H + E +
Sbjct: 194 KFSKIDGDTY-DLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQ 252
Query: 258 IILRTCDFNSSDPWSSDECSDAVAEVLKQYKEIDIYSIYTSVCSSNSLESSQLLMKRTSK 317
++ + + + +S EC + + +L S + ESSQ
Sbjct: 253 NLINSASTDEAAHFSYQECENILNLLL-----------------SYTRESSQKGTADCLN 295
Query: 318 MMP-RIMGGYDPCLDNYAK------AFYNRLDVQKALHVSDGHLLRNWSICNTTMYEGWP 370
M + Y C N+ K F++ V +LH+ D + +W C ++
Sbjct: 296 MYNFNLKDSYPSCGMNWPKDISFVSKFFSTPGVIDSLHL-DSDKIDHWKECTNSVGTKLS 354
Query: 371 QP--KPSVLPIYTKLIEAGLRIWIYSGDTDGRVPVLSTRYCLNSL---------GLSITK 419
P KPS+ + L+E+G+ I +++GD D + + + L+++ G S
Sbjct: 355 NPISKPSI-HLLPGLLESGIEIVLFNGDKD---LICNNKGVLDTIDNLKWGGIKGFSDDA 410
Query: 420 SWRPWYHQKQVGGWVQEYAG-------LTFVTVRGAGHAVPVFK 456
W H+ + +E++G LTFV+V A H VP K
Sbjct: 411 VSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSVYNASHMVPFDK 454
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 328 PCLDNYAKAFY-NRLDVQKALHVSDGHLLRNWSICNTTMYEGWPQPKPSVLPIYTKLIEA 386
PC + A + Y N V+KAL++ + L W +CN + + + S+ Y KL+ +
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNIPEQ--LPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSS 61
Query: 387 -GLRIWIYSGDTDGRVPVLSTRYCLNSLGLSITKSWRPWYHQ-----KQVGGWVQEYAGL 440
+I +Y+GD D + + ++SL + RPW + +Q+ G+V+E++ +
Sbjct: 62 QKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI 121
Query: 441 TFVTVRGAGHAVPVFKP 457
F+T++GAGH VP KP
Sbjct: 122 AFLTIKGAGHMVPTDKP 138
>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
Length = 670
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 257 KIILRTCDFNSSDPWSSDECSDAVAEVLKQYKEIDIYSIYTSVCSSNS 304
++I R +N + PW+ D D + V Y+ +S+Y S S NS
Sbjct: 101 ELIERLGGWNITGPWAKDNFQDTLQVVTAHYRTSPFFSVYVSADSKNS 148
>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed
Conformation
Length = 530
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 368 GWPQPKPSVLPIYTKLIEAG---LRIW---IYSGDTDGRVPVLSTRYCLNSLGLSITKSW 421
WPQP + K IE G +R+W IY+ D R+PV++ Y +IT+S
Sbjct: 267 NWPQP------VILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITEST 320
Query: 422 RPWYHQKQVGG 432
+ Q+ V G
Sbjct: 321 KKVILQEFVRG 331
>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed
State
pdb|2O1P|B Chain B, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed
State
Length = 546
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 368 GWPQPKPSVLPIYTKLIEAG---LRIW---IYSGDTDGRVPVLSTRYCLNSLGLSITKSW 421
WPQP + K IE G +R+W IY+ D R+PV++ Y +IT+S
Sbjct: 267 NWPQP------VILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITEST 320
Query: 422 RPWYHQKQVGG 432
+ Q+ V G
Sbjct: 321 KKVILQEFVRG 331
>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
pdb|3C66|A Chain A, Yeast Poly(A) Polymerase In Complex With Fip1 Residues
80-105
pdb|3C66|B Chain B, Yeast Poly(A) Polymerase In Complex With Fip1 Residues
80-105
Length = 537
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 368 GWPQPKPSVLPIYTKLIEAG---LRIW---IYSGDTDGRVPVLSTRYCLNSLGLSITKSW 421
WPQP + K IE G +R+W IY+ D R+PV++ Y +IT+S
Sbjct: 267 NWPQP------VILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITEST 320
Query: 422 RPWYHQKQVGG 432
+ Q+ V G
Sbjct: 321 KKVILQEFVRG 331
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And
Oligo(A)
Length = 525
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 368 GWPQPKPSVLPIYTKLIEAG---LRIW---IYSGDTDGRVPVLSTRYCLNSLGLSITKSW 421
WPQP + K IE G +R+W IY+ D R+PV++ Y +IT+S
Sbjct: 263 NWPQP------VILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITEST 316
Query: 422 RPWYHQKQVGG 432
+ Q+ V G
Sbjct: 317 KKVILQEFVRG 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,766,493
Number of Sequences: 62578
Number of extensions: 725066
Number of successful extensions: 1516
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1454
Number of HSP's gapped (non-prelim): 29
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)