Query 011739
Match_columns 478
No_of_seqs 233 out of 1253
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:42:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 1.3E-30 2.8E-35 275.8 23.5 304 158-471 112-448 (472)
2 KOG1338 Uncharacterized conser 99.9 1E-26 2.2E-31 227.5 13.6 238 77-335 11-272 (466)
3 PF00856 SET: SET domain; Int 99.7 7.2E-17 1.6E-21 144.5 6.6 51 267-319 110-162 (162)
4 PF09273 Rubis-subs-bind: Rubi 99.4 8.1E-13 1.8E-17 115.2 9.4 101 357-462 12-128 (128)
5 smart00317 SET SET (Su(var)3-9 98.4 4.6E-07 1E-11 76.6 5.1 50 269-318 67-116 (116)
6 KOG1085 Predicted methyltransf 96.2 0.004 8.7E-08 60.0 3.6 52 276-328 334-385 (392)
7 KOG4442 Clathrin coat binding 95.6 0.014 3.1E-07 62.8 4.9 44 276-320 194-238 (729)
8 KOG1079 Transcriptional repres 94.9 0.025 5.4E-07 60.7 4.0 46 276-321 666-711 (739)
9 KOG1080 Histone H3 (Lys4) meth 94.2 0.048 1E-06 62.3 4.5 46 275-320 939-984 (1005)
10 KOG2589 Histone tail methylase 93.5 0.054 1.2E-06 54.3 2.9 47 271-321 193-239 (453)
11 COG2940 Proteins containing SE 88.9 0.21 4.5E-06 53.5 1.8 47 275-321 405-451 (480)
12 KOG1083 Putative transcription 88.3 0.51 1.1E-05 53.4 4.2 45 277-321 1252-1296(1306)
13 KOG1082 Histone H3 (Lys9) meth 78.1 1.9 4E-05 44.5 3.2 47 275-321 272-322 (364)
14 smart00317 SET SET (Su(var)3-9 77.7 2.5 5.4E-05 34.9 3.3 30 93-125 9-38 (116)
15 KOG1338 Uncharacterized conser 58.0 14 0.0003 38.1 4.3 71 269-345 269-343 (466)
16 COG1188 Ribosome-associated he 54.6 12 0.00026 30.9 2.7 53 240-321 10-62 (100)
17 KOG1141 Predicted histone meth 41.0 16 0.00035 40.9 1.9 56 277-332 1191-1253(1262)
18 KOG2084 Predicted histone tail 41.0 32 0.0007 36.1 4.2 62 268-333 198-265 (482)
19 KOG2461 Transcription factor B 30.1 43 0.00093 35.0 2.9 32 300-332 124-155 (396)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=275.84 Aligned_cols=304 Identities=23% Similarity=0.270 Sum_probs=224.7
Q ss_pred HHHHHHHHHHh-CCCCChhHHHhhhCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHHHHHHHhhc--CCCCccc
Q 011739 158 LRLACLLLYAF-DQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWH--SGVPLKI 234 (478)
Q Consensus 158 ~~Lal~Ll~e~-~g~~S~w~pYl~~LP~~~~~~~pl~ws~~el~~L~gt~l~~~~~~~~~~~~~~~~~~~~--~~~p~~~ 234 (478)
..++++++++. .+..|.|.+|+..||..+ ++|+.|..+++..|.+++....+..++..+...+.+... ...+..+
T Consensus 112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~--~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (472)
T KOG1337|consen 112 IALALFLLLEWAHGEISKWKPYISTLPSQY--NSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQSHPSLF 189 (472)
T ss_pred HHHHHHHHHhhhccccccchhhhhhchhhc--CCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHhccccc
Confidence 78899999998 566699999999999997 689999999999999999999888777666664433221 1111111
Q ss_pred c---ccCCCHHHHHHHHHhhhhcceeeecccc---cccCCcceeeeecccCCCCCCCCceEEEeeeCCeEEEEEEecccC
Q 011739 235 K---RLAHDPERFIWAVSIAQSRCINMQVRIG---ALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHV 308 (478)
Q Consensus 235 ~---~~~~t~e~f~WA~~~V~SRaf~~~~~~~---~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i 308 (478)
. ...++++.|+||+++|.||+|+.+.... .......+|+|++||+||++.. +...++..++. +.+++.++|
T Consensus 190 ~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~--~~l~~~~~v 266 (472)
T KOG1337|consen 190 GSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEA--VELVAERDV 266 (472)
T ss_pred cccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCc--EEEEEeeee
Confidence 1 1127899999999999999999988731 1235789999999999999986 45566666666 777899999
Q ss_pred CCCcEEEEcCCCCCCcHHHHHhCCccCCCCCCCeEEeccCcccccch----hhchhhHcCCCcccccceeecCCCCccch
Q 011739 309 RRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDS----FLSVFNISGLPEEYYHNSKISSDEESFID 384 (478)
Q Consensus 309 ~~GeEv~isYG~~~sN~~LL~~YGFv~~~Np~D~v~l~~~~~~~~d~----~~~~l~~~gl~~~~~~~~~~~~~~~~~~d 384 (478)
++||||||+||++ +|++||++|||+.++||+|.|.+.+.... .+. ....+...+++...++.+.... ...-+
T Consensus 267 ~~geevfi~YG~~-~N~eLL~~YGFv~~~N~~d~v~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 342 (472)
T KOG1337|consen 267 SAGEEVFINYGPK-SNAELLLHYGFVEEDNPYDSVTLKLALPP-EDVSYLDKSDVLKKNGLPSSGEFSILLTG--EPVSE 342 (472)
T ss_pred cCCCeEEEecCCC-chHHHHHhcCCCCCCCCcceEEEeecccc-cccchhHHHHHHhhcCCCCCceEEEeecC--Cchhh
Confidence 9999999999998 79999999999999999999998775431 111 1223445555554333222211 11100
Q ss_pred HHHHHH-HHhcC------------------CCCCCCCCCCchhHHHHHHHHHHH-HHHHHHhCCCChHHHHHHHhhCCCC
Q 011739 385 GAVIAA-ARTLP------------------TWSDGDVPLVPSIERKAVKELQEE-CRQMLAEFPTTSKQDQKMLDSMKEP 444 (478)
Q Consensus 385 ~~Llaa-lR~l~------------------~~~~~~~~~s~~~E~~~~~~L~~~-~~~~L~~y~tt~eeD~~~L~~~~~~ 444 (478)
...+.. ++.+. .+.....+.+.++|.+.+..+... |...+..+.+++++|+..+.+. .+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~-~l 421 (472)
T KOG1337|consen 343 MLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDN-IL 421 (472)
T ss_pred hhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhccc-cc
Confidence 011111 11110 111223456678999999999999 9999999999999999999874 57
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011739 445 RRTLEAAIKYRLHRKLFIDKVIKALDI 471 (478)
Q Consensus 445 ~~~~~~A~~~R~~eK~iL~~~l~~L~~ 471 (478)
+.+..++.++|..+|+||.+.+..+..
T Consensus 422 ~~~~~~~~k~~~~~~~iL~~~~~~~~~ 448 (472)
T KOG1337|consen 422 SKLLELLEKLRTLEKRILEKSLKLLRS 448 (472)
T ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 789999999999999999999987773
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=1e-26 Score=227.51 Aligned_cols=238 Identities=15% Similarity=0.222 Sum_probs=180.7
Q ss_pred hHHhhcCcCC-cee------ec---C--CCccEEEEccCCCcccCCceEEEcCcccccccccccCCCCCCCCCCCCchhh
Q 011739 77 GYVRSMRAYG-VEF------KE---G--PDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIF 144 (478)
Q Consensus 77 ~~~~w~~~~g-v~i------~~---~--~~GrGl~At~dI~~~~~ge~ll~IP~~~~ls~~~~~~~~~f~~~~~lg~~~~ 144 (478)
+|+.|++.-+ ++. +. . ..|+|++|+++|++ ||.++.+|+++++++.+... +.++- ...
T Consensus 11 ~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkk---gE~Lf~~prdsvLsvtts~l------i~~lp-s~~ 80 (466)
T KOG1338|consen 11 RFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKK---GESLFAYPRDSVLSVTTSAL------ITPLP-SDI 80 (466)
T ss_pred HHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcC---CceEEEecCccEEeeehHHh------cccch-HHH
Confidence 8999998544 443 32 2 34999999999998 89999999999999987431 00111 112
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHhCC-CCChhHHHhhhCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHHHHHH
Q 011739 145 DIINSTDPETDWDLRLACLLLYAFDQ-DDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWE 223 (478)
Q Consensus 145 ~~~~~~~~~~~~~~~Lal~Ll~e~~g-~~S~w~pYl~~LP~~~~~~~pl~ws~~el~~L~gt~l~~~~~~~~~~~~~~~~ 223 (478)
+.+.. ....| ..|++.|++|..- ..|+|+||++.+|+..++++|+||+++|+..|..+.+.+...+.+..+.+.|.
T Consensus 81 rv~Ln--e~gsw-~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i 157 (466)
T KOG1338|consen 81 RVLLN--EVGSW-GMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFI 157 (466)
T ss_pred HHHhh--cCCcH-HHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHH
Confidence 22222 23468 7788999999854 44999999999999999999999999999887766666668888889998887
Q ss_pred Hhhc---CCCCccccccCCCHHHHHHHHHhhhhcceeeeccccc--------ccCCcceeeeecccCCCCCCCCceEEEe
Q 011739 224 KNWH---SGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGA--------LVQDANMLIPYADMLNHSFQPNCFFHWR 292 (478)
Q Consensus 224 ~~~~---~~~p~~~~~~~~t~e~f~WA~~~V~SRaf~~~~~~~~--------~~~~~~~LvP~~Dm~NH~~~~~~~~~~~ 292 (478)
.++. ...|..+ ..+++|+|..+++++.+.+|.+...... .+....+|+|.+||+||+.. .|+....
T Consensus 158 ~~i~pf~~~~p~vf--s~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~-k~nanl~ 234 (466)
T KOG1338|consen 158 FVIQPFKQHCPIVF--SRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGL-KANANLR 234 (466)
T ss_pred HHHHHHHHhCcchh--cccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchh-hccccee
Confidence 6542 2333222 2378999999999999999999876321 13457899999999999986 1334444
Q ss_pred eeCCeEEEEEEecccCCCCcEEEEcCCCCCCcHHHHHhCCccC
Q 011739 293 FKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSS 335 (478)
Q Consensus 293 ~~~~~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGFv~ 335 (478)
.+++| +.|+|.|+|.+|+||+++||-+ +|. |++||.+.
T Consensus 235 y~~Nc--L~mva~r~iekgdev~n~dg~~-p~~--l~~l~ka~ 272 (466)
T KOG1338|consen 235 YEDNC--LEMVADRNIEKGDEVDNSDGLK-PMG--LLKLTKAL 272 (466)
T ss_pred ccCcc--eeeeecCCCCCccccccccccC-cch--hhhhhhhc
Confidence 55788 5777999999999999999988 687 77787765
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.67 E-value=7.2e-17 Score=144.49 Aligned_cols=51 Identities=39% Similarity=0.757 Sum_probs=43.6
Q ss_pred CCcceeeeecccCCCCCCCCceEEEee--eCCeEEEEEEecccCCCCcEEEEcCC
Q 011739 267 QDANMLIPYADMLNHSFQPNCFFHWRF--KDRMLEVMVNAGQHVRRGEEMTVNYM 319 (478)
Q Consensus 267 ~~~~~LvP~~Dm~NH~~~~~~~~~~~~--~~~~~~~~l~a~r~i~~GeEv~isYG 319 (478)
....+|+|++||+||+..|||.+.++. .++. +.++|.|+|++|||||++||
T Consensus 110 ~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~--~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 110 RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGC--LVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEETGGGGSEEESSTSEEEEEEEETTTTE--EEEEESS-B-TTSBEEEEST
T ss_pred ccccccCcHhHheccccccccceeeEeecccce--EEEEECCccCCCCEEEEEEC
Confidence 467999999999999999999888875 3445 88899999999999999999
No 4
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.41 E-value=8.1e-13 Score=115.20 Aligned_cols=101 Identities=27% Similarity=0.404 Sum_probs=79.2
Q ss_pred hchhhHcCCCcccccceeecCCCCccchHHHHHHHHhcCC-------C---------CCCCCCCCchhHHHHHHHHHHHH
Q 011739 357 LSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPT-------W---------SDGDVPLVPSIERKAVKELQEEC 420 (478)
Q Consensus 357 ~~~l~~~gl~~~~~~~~~~~~~~~~~~d~~LlaalR~l~~-------~---------~~~~~~~s~~~E~~~~~~L~~~~ 420 (478)
.+.|+.+|+... ..+.+..+++ ++++|++++|++.. + .....+++..||.+++++|...|
T Consensus 12 ~~lL~~~gl~~~--~~f~l~~~~~--~~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~~~~~~~~ls~~nE~~~l~~L~~~~ 87 (128)
T PF09273_consen 12 KQLLEEHGLSGD--QTFDLRADGP--LPPELLAALRVLLMTEEELRALKSLADSSEWSDRSEPLSPENEIAALQFLIDLC 87 (128)
T ss_dssp HHHHHHTTS-SE--EEEEEECCSS--SHHHHHHHHHHHHSCHHHHHHHHHCGTTTHCCHCCC-SBHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCC--ceeeeeCCCC--CCHHHHHHHHHHHcChHHHHHHHHhhcccccccccCCCchhhHHHHHHHHHHHH
Confidence 345788999875 2355555555 67899999999721 1 11234678899999999999999
Q ss_pred HHHHHhCCCChHHHHHHHhhCCCCcHhHHHHHHHHHHHHHHH
Q 011739 421 RQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFI 462 (478)
Q Consensus 421 ~~~L~~y~tt~eeD~~~L~~~~~~~~~~~~A~~~R~~eK~iL 462 (478)
..+|+.|+||+|+|+++|++. ..+.++++|++||++||+||
T Consensus 88 ~~~L~~y~TtleeD~~~L~~~-~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 88 EARLSAYPTTLEEDEELLQSN-DLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHTTSSS-HHHHHHHCHTC-CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHhcC-CCcHHHHHHHHHHHHhHhcC
Confidence 999999999999999999984 56778999999999999997
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.37 E-value=4.6e-07 Score=76.59 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=43.0
Q ss_pred cceeeeecccCCCCCCCCceEEEeeeCCeEEEEEEecccCCCCcEEEEcC
Q 011739 269 ANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 318 (478)
Q Consensus 269 ~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isY 318 (478)
...+.|+++++||+..||+.+.+...++...+.++|.|+|++||||+++|
T Consensus 67 ~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 67 ARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 34489999999999999998888776654347888999999999999999
No 6
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=96.23 E-value=0.004 Score=60.04 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=42.9
Q ss_pred cccCCCCCCCCceEEEeeeCCeEEEEEEecccCCCCcEEEEcCCCCCCcHHHH
Q 011739 276 ADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 328 (478)
Q Consensus 276 ~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL 328 (478)
.-++||+-.+|+......-++...+++.|.++|.+|||+...||.+ |-+.++
T Consensus 334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR-Skesi~ 385 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR-SKESIA 385 (392)
T ss_pred hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc-chhHHh
Confidence 3489999999997776665665568999999999999999999998 666554
No 7
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.014 Score=62.77 Aligned_cols=44 Identities=34% Similarity=0.582 Sum_probs=36.4
Q ss_pred cccCCCCCCCCceEE-EeeeCCeEEEEEEecccCCCCcEEEEcCCC
Q 011739 276 ADMLNHSFQPNCFFH-WRFKDRMLEVMVNAGQHVRRGEEMTVNYMH 320 (478)
Q Consensus 276 ~Dm~NH~~~~~~~~~-~~~~~~~~~~~l~a~r~i~~GeEv~isYG~ 320 (478)
+=++||+.+|||.+. |.+ .+...+-+.|.+.|++||||+..|+-
T Consensus 194 aRFiNHSC~PNa~~~KWtV-~~~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 194 ARFINHSCDPNAEVQKWTV-PDELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred HHhhcCCCCCCceeeeeee-CCeeEEEEeEecccCCCceeeEeccc
Confidence 558999999999875 544 44667888899999999999998874
No 8
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=94.91 E-value=0.025 Score=60.67 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=36.7
Q ss_pred cccCCCCCCCCceEEEeeeCCeEEEEEEecccCCCCcEEEEcCCCC
Q 011739 276 ADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 321 (478)
Q Consensus 276 ~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 321 (478)
+=++||+.+|||....-...|.-.+-+.|.|.|.+|||||..|+-.
T Consensus 666 ~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 666 IRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred hhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccC
Confidence 3489999999997665554444448889999999999999999843
No 9
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=94.24 E-value=0.048 Score=62.35 Aligned_cols=46 Identities=26% Similarity=0.499 Sum_probs=39.5
Q ss_pred ecccCCCCCCCCceEEEeeeCCeEEEEEEecccCCCCcEEEEcCCC
Q 011739 275 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMH 320 (478)
Q Consensus 275 ~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~ 320 (478)
++=++||+..|||....-..+|...+++.|.|+|.+||||+.+|--
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF 984 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKF 984 (1005)
T ss_pred hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccc
Confidence 5668999999999777666666667999999999999999999974
No 10
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=93.54 E-value=0.054 Score=54.26 Aligned_cols=47 Identities=36% Similarity=0.548 Sum_probs=35.3
Q ss_pred eeeeecccCCCCCCCCceEEEeeeCCeEEEEEEecccCCCCcEEEEcCCCC
Q 011739 271 MLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 321 (478)
Q Consensus 271 ~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 321 (478)
-|=| +-++||+..|||++ ...++. ...|++.|||++||||+--||..
T Consensus 193 wLGP-aafINHDCrpnCkF--vs~g~~-tacvkvlRDIePGeEITcFYgs~ 239 (453)
T KOG2589|consen 193 WLGP-AAFINHDCRPNCKF--VSTGRD-TACVKVLRDIEPGEEITCFYGSG 239 (453)
T ss_pred eecc-HHhhcCCCCCCcee--ecCCCc-eeeeehhhcCCCCceeEEeeccc
Confidence 3444 45899999999865 333321 26788999999999999999964
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=88.93 E-value=0.21 Score=53.55 Aligned_cols=47 Identities=28% Similarity=0.421 Sum_probs=37.1
Q ss_pred ecccCCCCCCCCceEEEeeeCCeEEEEEEecccCCCCcEEEEcCCCC
Q 011739 275 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 321 (478)
Q Consensus 275 ~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 321 (478)
+.=++||+..||+........+-..+..++.++|++||||+++||..
T Consensus 405 ~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~ 451 (480)
T COG2940 405 VARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPS 451 (480)
T ss_pred ccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccc
Confidence 34489999999987665544443347788999999999999999975
No 12
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=88.30 E-value=0.51 Score=53.41 Aligned_cols=45 Identities=29% Similarity=0.411 Sum_probs=36.7
Q ss_pred ccCCCCCCCCceEEEeeeCCeEEEEEEecccCCCCcEEEEcCCCC
Q 011739 277 DMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 321 (478)
Q Consensus 277 Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 321 (478)
-+.||+..+||...--..+|.+.+.+.|.|+|.+||||+..|..+
T Consensus 1252 RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1252 RFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred cccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence 367999999997543334556778999999999999999999876
No 13
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=78.05 E-value=1.9 Score=44.55 Aligned_cols=47 Identities=32% Similarity=0.509 Sum_probs=34.7
Q ss_pred ecccCCCCCCCCceEEEeeeC----CeEEEEEEecccCCCCcEEEEcCCCC
Q 011739 275 YADMLNHSFQPNCFFHWRFKD----RMLEVMVNAGQHVRRGEEMTVNYMHG 321 (478)
Q Consensus 275 ~~Dm~NH~~~~~~~~~~~~~~----~~~~~~l~a~r~i~~GeEv~isYG~~ 321 (478)
+.=++||+..||..+..-..+ ....+.+.|.++|.+|+|++..||..
T Consensus 272 v~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~ 322 (364)
T KOG1082|consen 272 VARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKA 322 (364)
T ss_pred ccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccc
Confidence 345899999998754332222 23346778999999999999999976
No 14
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=77.65 E-value=2.5 Score=34.87 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=25.2
Q ss_pred CCccEEEEccCCCcccCCceEEEcCcccccccc
Q 011739 93 PDGFGVFASKDIEPRRRARLVMQIPLELMLTIR 125 (478)
Q Consensus 93 ~~GrGl~At~dI~~~~~ge~ll~IP~~~~ls~~ 125 (478)
..|+||+|+++|++ |++|+..+-..+....
T Consensus 9 ~~G~gl~a~~~i~~---g~~i~~~~g~~~~~~~ 38 (116)
T smart00317 9 GKGWGVRATEDIPK---GEFIGEYVGEIITSEE 38 (116)
T ss_pred CCcEEEEECCccCC---CCEEEEEEeEEECHHH
Confidence 56999999999998 8999998887766543
No 15
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.99 E-value=14 Score=38.06 Aligned_cols=71 Identities=8% Similarity=-0.068 Sum_probs=50.8
Q ss_pred cceeeeecccCCCCCCC-C-ceEEEeeeCCeEEEEEEecccCCCCcEEEEcCCCCCCcHHHHHhCCc-cC-CCCCCCeEE
Q 011739 269 ANMLIPYADMLNHSFQP-N-CFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGF-SS-PVNPWNVIQ 344 (478)
Q Consensus 269 ~~~LvP~~Dm~NH~~~~-~-~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGF-v~-~~Np~D~v~ 344 (478)
..+++|+.+|.|..-.- | +.+-++..++ ..+++.|.+ |.|+.+.|+.. .+.++...||| +- +.-|++.+-
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d---~tm~~~R~i--l~ql~nt~tel-d~~e~~~syd~ftkkE~~p~~g~l 342 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPND---DTMRNMRLI--LLQLHNTRTEL-DINEFHSSYDTFTKKEVKPAIGKL 342 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCc---chHHHHHHH--HHHhccchhhh-hhHHHHHhhhhhhhccccccceee
Confidence 68999999999887531 1 1122232222 566788888 99999999999 49999999995 44 456887655
Q ss_pred e
Q 011739 345 F 345 (478)
Q Consensus 345 l 345 (478)
+
T Consensus 343 v 343 (466)
T KOG1338|consen 343 V 343 (466)
T ss_pred e
Confidence 4
No 16
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=54.61 E-value=12 Score=30.94 Aligned_cols=53 Identities=13% Similarity=0.344 Sum_probs=40.1
Q ss_pred CHHHHHHHHHhhhhcceeeecccccccCCcceeeeecccCCCCCCCCceEEEeeeCCeEEEEEEecccCCCCcEEEEcCC
Q 011739 240 DPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYM 319 (478)
Q Consensus 240 t~e~f~WA~~~V~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG 319 (478)
-.+.|+|+.-++-+|+..-...+++ .+.++ |. ...+.+.++.|++|.+.||
T Consensus 10 RLDKwL~~aR~~KrRslAk~~~~~G-----------------------rV~vN---G~---~aKpS~~VK~GD~l~i~~~ 60 (100)
T COG1188 10 RLDKWLWAARFIKRRSLAKEMIEGG-----------------------RVKVN---GQ---RAKPSKEVKVGDILTIRFG 60 (100)
T ss_pred ehHHHHHHHHHhhhHHHHHHHHHCC-----------------------eEEEC---CE---EcccccccCCCCEEEEEeC
Confidence 4699999999999999986554321 34333 22 3368899999999999999
Q ss_pred CC
Q 011739 320 HG 321 (478)
Q Consensus 320 ~~ 321 (478)
..
T Consensus 61 ~~ 62 (100)
T COG1188 61 NK 62 (100)
T ss_pred Cc
Confidence 86
No 17
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=41.05 E-value=16 Score=40.88 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=35.6
Q ss_pred ccCCCCCCCCceEEE-eeeCCeEE---EEEEecccCCCCcEEEEcCCCC---CCcHHHHHhCC
Q 011739 277 DMLNHSFQPNCFFHW-RFKDRMLE---VMVNAGQHVRRGEEMTVNYMHG---QMNDMLMQRYG 332 (478)
Q Consensus 277 Dm~NH~~~~~~~~~~-~~~~~~~~---~~l~a~r~i~~GeEv~isYG~~---~sN~~LL~~YG 332 (478)
-++||+..||..|.- -.++.... |.+.+.+-|++|.|++-.|+-- -...+|+...|
T Consensus 1191 RfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1191 RFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCG 1253 (1262)
T ss_pred hhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecC
Confidence 389999999874421 12232211 3445789999999999999832 13445555554
No 18
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=40.97 E-value=32 Score=36.12 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=44.5
Q ss_pred CcceeeeecccCCCCCCCCceEEEeeeCCeEEEEEEecccCCCCc-EEEEcCCCCC-----CcHHHHHhCCc
Q 011739 268 DANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGE-EMTVNYMHGQ-----MNDMLMQRYGF 333 (478)
Q Consensus 268 ~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~l~a~r~i~~Ge-Ev~isYG~~~-----sN~~LL~~YGF 333 (478)
...+|.|..=++||+..||+.+.++.. . ..+.+...+.+++ +++++|-... ...+|...|.|
T Consensus 198 ~~~~l~~~~~~~~hsC~pn~~~~~~~~--~--~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 198 LGRGLFPGSSLFNHSCFPNISVIFDGR--G--LALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred ceeeecccchhcccCCCCCeEEEECCc--e--eEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 467889988899999999987655543 3 4455677777776 9999998642 13346666667
No 19
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=30.07 E-value=43 Score=34.97 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=28.3
Q ss_pred EEEEecccCCCCcEEEEcCCCCCCcHHHHHhCC
Q 011739 300 VMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYG 332 (478)
Q Consensus 300 ~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YG 332 (478)
+..+|.|+|++||||.+-||... +.+|...+|
T Consensus 124 Ifyrt~r~I~p~eELlVWY~~e~-~~~L~~~~~ 155 (396)
T KOG2461|consen 124 IFYRTIRDIRPNEELLVWYGSEY-AEELAYGHG 155 (396)
T ss_pred eEEEecccCCCCCeEEEEeccch-HhHhcccCC
Confidence 66789999999999999999984 888888887
Done!