Query 011741
Match_columns 478
No_of_seqs 137 out of 1646
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1289 Amino acid transporter 100.0 4.7E-59 1E-63 455.8 36.1 457 1-474 63-524 (550)
2 TIGR00907 2A0304 amino acid pe 100.0 1.7E-57 3.6E-62 469.6 46.4 444 10-467 37-482 (482)
3 TIGR03428 ureacarb_perm permea 100.0 5E-51 1.1E-55 419.9 46.2 424 8-454 36-473 (475)
4 PRK15049 L-asparagine permease 100.0 6.2E-50 1.4E-54 412.3 41.4 410 9-461 51-470 (499)
5 TIGR00908 2A0305 ethanolamine 100.0 3.4E-48 7.3E-53 396.2 42.6 404 10-465 30-435 (442)
6 TIGR00906 2A0303 cationic amin 100.0 1.6E-48 3.4E-53 405.5 40.1 407 15-465 58-556 (557)
7 TIGR03813 put_Glu_GABA_T putat 100.0 2.2E-48 4.7E-53 400.5 40.5 433 13-472 24-469 (474)
8 PRK10249 phenylalanine transpo 100.0 2.3E-48 4.9E-53 397.9 40.1 407 9-460 44-456 (458)
9 TIGR00913 2A0310 amino acid pe 100.0 2.7E-48 5.9E-53 400.8 39.7 396 9-436 25-439 (478)
10 PRK11357 frlA putative fructos 100.0 6.2E-48 1.3E-52 394.5 39.4 373 10-423 32-406 (445)
11 PRK11387 S-methylmethionine tr 100.0 9.1E-48 2E-52 395.3 38.9 411 9-464 37-460 (471)
12 PRK10197 gamma-aminobutyrate t 100.0 3E-47 6.5E-52 388.3 40.2 384 9-429 15-405 (446)
13 PRK10238 aromatic amino acid t 100.0 4.4E-47 9.5E-52 388.1 39.6 382 9-428 35-422 (456)
14 PRK10655 potE putrescine trans 100.0 6.3E-47 1.4E-51 386.4 40.7 366 13-420 32-400 (438)
15 TIGR01773 GABAperm gamma-amino 100.0 4.3E-47 9.3E-52 389.0 39.4 410 9-462 35-451 (452)
16 TIGR00910 2A0307_GadC glutamat 100.0 1.4E-46 3E-51 387.8 39.5 422 13-464 27-465 (507)
17 PRK10746 putative transport pr 100.0 2E-46 4.3E-51 383.3 39.0 379 9-425 33-421 (461)
18 PRK10644 arginine:agmatin anti 100.0 4.9E-46 1.1E-50 380.3 41.8 364 16-423 37-403 (445)
19 PRK10836 lysine transporter; P 100.0 2.6E-46 5.7E-51 386.0 40.0 384 9-424 38-434 (489)
20 PRK10580 proY putative proline 100.0 3.7E-46 8E-51 382.2 39.8 405 10-460 33-447 (457)
21 TIGR00905 2A0302 transporter, 100.0 8E-46 1.7E-50 381.1 40.8 377 12-423 33-411 (473)
22 PRK11049 D-alanine/D-serine/gl 100.0 4.2E-46 9.2E-51 382.5 38.6 381 10-428 44-435 (469)
23 TIGR00911 2A0308 L-type amino 100.0 9.4E-46 2E-50 383.5 40.6 366 9-412 65-434 (501)
24 KOG1287 Amino acid transporter 100.0 6.1E-46 1.3E-50 363.7 35.8 371 10-419 36-410 (479)
25 PRK11021 putative transporter; 100.0 8.8E-45 1.9E-49 367.3 39.5 340 9-393 22-361 (410)
26 TIGR00909 2A0306 amino acid tr 100.0 1.1E-44 2.4E-49 369.4 40.4 397 10-458 27-428 (429)
27 PRK10435 cadB lysine/cadaverin 100.0 7.1E-45 1.5E-49 370.2 38.6 363 14-422 32-401 (435)
28 TIGR03810 arg_ornith_anti argi 100.0 1.8E-44 3.8E-49 370.7 38.9 379 10-423 25-406 (468)
29 COG1113 AnsP Gamma-aminobutyra 100.0 5.4E-44 1.2E-48 344.1 32.7 411 10-465 37-455 (462)
30 COG0833 LysP Amino acid transp 100.0 9.9E-44 2.2E-48 349.2 34.9 394 9-432 67-471 (541)
31 PRK15238 inner membrane transp 100.0 1.5E-42 3.3E-47 358.6 40.4 437 11-465 29-493 (496)
32 PF13520 AA_permease_2: Amino 100.0 6.6E-43 1.4E-47 356.2 34.1 387 13-438 24-416 (426)
33 TIGR00930 2a30 K-Cl cotranspor 100.0 7.3E-41 1.6E-45 362.4 41.1 395 8-425 99-517 (953)
34 KOG1286 Amino acid transporter 100.0 2.4E-41 5.3E-46 344.4 33.7 401 9-432 53-466 (554)
35 PF00324 AA_permease: Amino ac 100.0 4.5E-43 9.7E-48 361.8 18.7 396 8-427 17-430 (478)
36 COG0531 PotE Amino acid transp 100.0 1.6E-40 3.5E-45 342.8 37.1 369 22-420 47-418 (466)
37 TIGR00837 araaP aromatic amino 99.9 9.3E-25 2E-29 219.1 31.1 347 22-414 30-377 (381)
38 KOG2082 K+/Cl- cotransporter K 99.9 2.2E-23 4.7E-28 208.1 28.1 416 11-474 138-656 (1075)
39 KOG1288 Amino acid transporter 99.9 8.9E-22 1.9E-26 195.3 24.3 386 9-423 89-500 (945)
40 TIGR00796 livcs branched-chain 99.8 1.5E-16 3.3E-21 156.1 31.0 319 21-404 30-365 (378)
41 PHA02764 hypothetical protein; 99.8 3.8E-17 8.3E-22 149.5 21.8 242 16-342 43-285 (399)
42 TIGR00912 2A0309 spore germina 99.8 1.5E-15 3.3E-20 151.2 30.8 267 10-317 25-293 (359)
43 PF03222 Trp_Tyr_perm: Tryptop 99.8 9E-15 2E-19 145.9 35.4 350 10-404 24-374 (394)
44 KOG2083 Na+/K+ symporter [Inor 99.7 6.7E-16 1.5E-20 152.8 20.6 387 9-425 52-446 (643)
45 PRK10483 tryptophan permease; 99.7 2.9E-13 6.4E-18 133.9 34.3 354 10-409 32-386 (414)
46 PRK15132 tyrosine transporter 99.7 3.6E-13 7.8E-18 133.9 33.4 353 10-411 24-377 (403)
47 PRK09664 tryptophan permease T 99.6 1.9E-12 4.2E-17 128.0 34.0 359 10-410 30-388 (415)
48 TIGR00814 stp serine transport 99.6 7.3E-13 1.6E-17 132.0 30.7 272 17-320 28-311 (397)
49 COG0814 SdaC Amino acid permea 99.5 5.8E-10 1.3E-14 112.3 35.5 234 9-264 29-266 (415)
50 PRK13629 threonine/serine tran 99.5 5.4E-10 1.2E-14 110.9 33.4 352 11-389 41-410 (443)
51 PF03845 Spore_permease: Spore 98.9 1.2E-06 2.6E-11 85.8 27.4 262 14-318 28-290 (320)
52 KOG1303 Amino acid transporter 98.9 1.9E-06 4.2E-11 86.5 28.6 272 9-321 58-336 (437)
53 PF01235 Na_Ala_symp: Sodium:a 98.6 2.8E-05 6E-10 77.3 26.1 281 7-320 38-338 (416)
54 PRK11375 allantoin permease; P 98.6 0.0011 2.5E-08 68.4 36.3 209 23-241 60-274 (484)
55 PTZ00206 amino acid transporte 98.5 0.00028 6E-09 72.7 30.3 232 9-253 80-316 (467)
56 COG1115 AlsT Na+/alanine sympo 98.4 0.0001 2.2E-09 72.7 23.1 285 7-320 82-382 (452)
57 PLN03074 auxin influx permease 98.4 0.00023 4.9E-09 73.2 26.9 58 195-253 234-291 (473)
58 KOG1304 Amino acid transporter 98.3 0.00042 9.2E-09 69.0 24.6 263 8-319 66-349 (449)
59 PF05525 Branch_AA_trans: Bran 98.3 0.001 2.3E-08 66.6 26.9 229 115-385 114-349 (427)
60 COG3949 Uncharacterized membra 98.2 0.0015 3.3E-08 61.9 24.5 243 22-314 38-283 (349)
61 COG1114 BrnQ Branched-chain am 98.2 0.0059 1.3E-07 59.9 28.3 232 115-385 116-351 (431)
62 TIGR00835 agcS amino acid carr 98.1 0.0038 8.2E-08 62.6 27.3 281 7-319 66-364 (425)
63 PF01490 Aa_trans: Transmembra 98.1 2.2E-07 4.7E-12 94.3 -3.2 275 9-321 23-303 (409)
64 PF01566 Nramp: Natural resist 97.9 0.0037 7.9E-08 62.2 23.1 46 276-321 241-286 (358)
65 PRK09442 panF sodium/panthothe 97.9 0.044 9.5E-07 56.9 33.1 245 38-315 96-346 (483)
66 PRK15433 branched-chain amino 97.7 0.054 1.2E-06 54.5 27.6 223 118-384 121-351 (439)
67 TIGR02119 panF sodium/pantothe 97.7 0.086 1.9E-06 54.6 31.0 244 40-316 97-346 (471)
68 COG1457 CodB Purine-cytosine p 97.6 0.12 2.6E-06 52.1 32.2 119 24-164 56-175 (442)
69 TIGR00813 sss transporter, SSS 97.5 0.033 7.2E-07 56.4 23.6 137 8-164 26-162 (407)
70 COG0733 Na+-dependent transpor 97.5 0.14 3.1E-06 51.1 29.6 192 116-323 141-334 (439)
71 KOG1305 Amino acid transporter 97.5 0.028 6.1E-07 56.5 21.3 231 7-254 24-255 (411)
72 PF02705 K_trans: K+ potassium 97.2 0.11 2.4E-06 53.5 22.6 204 80-326 105-311 (534)
73 PRK00701 manganese transport p 97.1 0.39 8.5E-06 49.0 30.1 39 26-64 67-107 (439)
74 PF00474 SSF: Sodium:solute sy 97.1 0.037 7.9E-07 56.1 17.7 138 8-164 29-166 (406)
75 PRK12488 acetate permease; Pro 96.9 0.82 1.8E-05 48.3 34.1 96 52-164 131-226 (549)
76 PRK11017 codB cytosine permeas 96.9 0.65 1.4E-05 47.0 37.0 166 43-240 62-229 (404)
77 TIGR02711 symport_actP cation/ 96.8 0.86 1.9E-05 48.1 33.0 92 53-161 132-223 (549)
78 TIGR02121 Na_Pro_sym sodium/pr 96.6 1.1 2.5E-05 46.5 29.8 97 51-162 104-200 (487)
79 TIGR02358 thia_cytX probable h 96.6 0.94 2E-05 45.5 32.4 177 44-250 50-228 (386)
80 COG0591 PutP Na+/proline sympo 96.6 1.2 2.5E-05 46.4 33.0 137 8-160 61-200 (493)
81 PRK09395 actP acetate permease 96.5 1.4 3E-05 46.6 34.3 101 44-161 123-225 (551)
82 PF02028 BCCT: BCCT family tra 96.5 1.2 2.7E-05 45.8 27.4 102 274-390 379-480 (485)
83 COG1953 FUI1 Cytosine/uracil/t 96.3 1.6 3.4E-05 44.5 32.7 181 55-247 107-293 (497)
84 TIGR00800 ncs1 NCS1 nucleoside 96.1 2 4.4E-05 44.0 33.9 65 34-102 58-123 (442)
85 COG1914 MntH Mn2+ and Fe2+ tra 96.0 2.1 4.5E-05 43.2 31.1 43 22-64 46-90 (416)
86 TIGR00794 kup potassium uptake 95.9 0.35 7.6E-06 51.3 16.2 177 118-326 167-348 (688)
87 PRK09950 putative transporter; 95.7 3.1 6.6E-05 43.1 30.0 92 289-388 400-492 (506)
88 PLN00149 potassium transporter 95.6 0.56 1.2E-05 50.3 16.4 180 118-326 197-381 (779)
89 PRK10745 trkD potassium transp 95.6 0.4 8.7E-06 50.1 15.0 176 119-326 143-322 (622)
90 TIGR03648 Na_symport_lg probab 95.5 4.1 8.8E-05 43.1 32.8 102 36-155 81-182 (552)
91 COG4145 PanF Na+/panthothenate 95.4 1.7 3.7E-05 42.3 17.4 303 16-358 61-381 (473)
92 PRK10484 putative transporter; 95.1 5.3 0.00012 41.9 36.1 28 289-316 328-355 (523)
93 PLN00148 potassium transporter 95.1 0.56 1.2E-05 50.3 14.3 176 119-326 197-377 (785)
94 PLN00150 potassium ion transpo 95.0 0.63 1.4E-05 49.9 14.5 176 119-326 214-394 (779)
95 PF00209 SNF: Sodium:neurotran 95.0 0.51 1.1E-05 49.5 14.1 176 132-323 193-377 (523)
96 PLN00151 potassium transporter 94.8 0.59 1.3E-05 50.3 13.8 177 118-326 273-454 (852)
97 PF02133 Transp_cyt_pur: Perme 94.8 5.5 0.00012 40.8 23.3 123 33-159 52-177 (440)
98 PRK15419 proline:sodium sympor 93.1 13 0.00027 38.9 33.9 31 286-316 323-353 (502)
99 PF13906 AA_permease_C: C-term 92.4 0.44 9.6E-06 32.4 5.2 50 401-463 1-50 (51)
100 PRK03356 L-carnitine/gamma-but 92.3 16 0.00034 37.9 31.3 92 289-388 403-494 (504)
101 PRK09928 choline transport pro 92.1 20 0.00043 38.5 28.8 89 289-385 407-495 (679)
102 COG3158 Kup K+ transporter [In 92.0 7.6 0.00017 40.1 15.5 121 32-165 66-194 (627)
103 TIGR00842 bcct choline/carniti 89.0 29 0.00064 35.5 29.7 92 289-388 354-446 (453)
104 COG1292 BetT Choline-glycine b 80.3 78 0.0017 32.9 27.8 90 59-154 178-271 (537)
105 COG4147 DhlC Predicted symport 78.7 82 0.0018 32.2 26.3 116 125-247 161-289 (529)
106 PF06570 DUF1129: Protein of u 66.4 50 0.0011 29.8 9.3 13 450-462 189-201 (206)
107 COG4858 Uncharacterized membra 61.9 1.1E+02 0.0025 26.9 10.5 11 344-354 101-111 (226)
108 PF09991 DUF2232: Predicted me 58.5 1.7E+02 0.0036 27.7 16.5 63 289-357 157-219 (290)
109 PF02554 CstA: Carbon starvati 50.2 2.7E+02 0.0059 27.7 19.0 53 200-253 293-348 (376)
110 TIGR01197 nramp NRAMP (natural 49.6 2.9E+02 0.0062 27.8 28.5 41 277-318 283-323 (390)
111 KOG3659 Sodium-neurotransmitte 48.1 3.7E+02 0.0079 28.6 15.3 130 112-248 247-377 (629)
112 PRK09509 fieF ferrous iron eff 46.2 1.4E+02 0.0031 28.6 9.2 29 381-409 53-81 (299)
113 PF04235 DUF418: Protein of un 42.2 1.3E+02 0.0029 25.7 7.6 15 456-470 140-154 (163)
114 PRK03557 zinc transporter ZitB 41.8 3.3E+02 0.0072 26.3 11.4 30 382-411 62-91 (312)
115 PF11174 DUF2970: Protein of u 41.0 66 0.0014 22.3 4.3 43 198-243 3-45 (56)
116 TIGR01167 LPXTG_anchor LPXTG-m 40.1 48 0.001 19.9 3.2 17 442-459 13-29 (34)
117 PF05656 DUF805: Protein of un 39.2 2E+02 0.0044 23.0 8.6 14 341-354 14-27 (120)
118 PF05767 Pox_A14: Poxvirus vir 36.3 1.3E+02 0.0028 23.1 5.4 20 443-462 52-71 (92)
119 PTZ00206 amino acid transporte 35.1 5.2E+02 0.011 26.6 15.9 52 274-332 125-176 (467)
120 PF14256 YwiC: YwiC-like prote 34.1 1.3E+02 0.0028 24.9 5.8 10 375-384 32-41 (129)
121 cd08764 Cyt_b561_CG1275_like N 32.5 2E+02 0.0042 26.3 7.1 28 441-468 177-204 (214)
122 PF01102 Glycophorin_A: Glycop 28.9 37 0.00081 27.8 1.7 17 448-464 78-94 (122)
123 PRK09928 choline transport pro 28.4 6E+02 0.013 27.7 11.0 91 57-153 180-274 (679)
124 COG4025 Predicted membrane pro 28.3 2.4E+02 0.0053 25.9 6.8 16 311-326 55-70 (284)
125 PLN02351 cytochromes b561 fami 28.3 3.2E+02 0.0069 25.4 7.8 24 442-465 203-226 (242)
126 PRK00968 tetrahydromethanopter 27.2 78 0.0017 28.5 3.5 29 217-245 204-233 (240)
127 PF11998 DUF3493: Protein of u 26.9 1.1E+02 0.0024 22.6 3.7 37 213-249 6-42 (75)
128 COG0053 MMT1 Predicted Co/Zn/C 25.5 2.6E+02 0.0056 27.0 7.2 28 387-414 61-88 (304)
129 KOG4303 Vesicular inhibitory a 25.4 6.7E+02 0.015 24.8 14.9 210 8-248 136-355 (524)
130 TIGR01297 CDF cation diffusion 23.7 3.5E+02 0.0076 25.2 7.7 21 388-408 39-59 (268)
131 COG2271 UhpC Sugar phosphate p 23.4 8.1E+02 0.018 25.1 10.7 26 301-326 68-93 (448)
132 PF05915 DUF872: Eukaryotic pr 23.3 63 0.0014 26.2 2.1 18 439-456 76-93 (115)
133 PF15099 PIRT: Phosphoinositid 22.6 59 0.0013 26.6 1.8 31 440-470 85-116 (129)
134 PF05297 Herpes_LMP1: Herpesvi 22.4 29 0.00063 32.6 0.0 25 333-357 13-37 (381)
135 PRK06638 NADH:ubiquinone oxido 22.3 5.7E+02 0.012 22.9 10.3 8 340-347 27-34 (198)
136 KOG2325 Predicted transporter/ 21.8 7.6E+02 0.017 25.7 10.0 28 216-243 21-48 (488)
137 COG0109 CyoE Polyprenyltransfe 21.4 5.9E+02 0.013 24.6 8.4 41 340-383 97-137 (304)
138 PHA02680 ORF090 IMV phosphoryl 21.2 3.8E+02 0.0082 20.4 5.5 15 446-460 56-70 (91)
139 PF08693 SKG6: Transmembrane a 21.1 76 0.0016 20.3 1.7 16 447-462 24-39 (40)
140 TIGR00727 ISP4_OPT small oligo 20.8 1.1E+03 0.024 25.7 22.4 53 199-251 472-526 (681)
141 COG4060 MtrD Tetrahydromethano 20.6 1.3E+02 0.0028 26.1 3.4 29 217-245 194-223 (230)
142 PF10327 7TM_GPCR_Sri: Serpent 20.5 3.9E+02 0.0084 25.7 7.4 64 289-357 190-254 (303)
143 PF06609 TRI12: Fungal trichot 20.4 1.1E+03 0.023 25.4 12.8 21 441-461 275-295 (599)
144 PRK13108 prolipoprotein diacyl 20.0 4.3E+02 0.0093 27.3 7.7 21 407-427 223-243 (460)
No 1
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-59 Score=455.76 Aligned_cols=457 Identities=37% Similarity=0.713 Sum_probs=417.2
Q ss_pred CCcccCc-chhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHH
Q 011741 1 MSLVTSK-NSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETI 79 (478)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~ 79 (478)
|+++++. .++..++..+||.+++|+|++++++.++.+++++|+++.+|++||.|.|+....+|+++++.+|++||...+
T Consensus 63 ~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~ 142 (550)
T KOG1289|consen 63 MGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYL 142 (550)
T ss_pred hcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHH
Confidence 4455544 356788888898889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 011741 80 GLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVI 159 (478)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~ 159 (478)
++....++..+..++.+.......+ +++.++.++...+..++.++..++|..+.|...|++.+.+.+.++.+++.
T Consensus 143 g~~~~~aSi~~S~A~~i~~~v~l~n-----p~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~ 217 (550)
T KOG1289|consen 143 GQATGVASITYSLAQLILGAVSLTN-----PNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVIL 217 (550)
T ss_pred HHHhhchhhhHHHHHHHHHHHhhcC-----CCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765 78888899999999999999999999999999999999999999999988
Q ss_pred hhhhheecccc---cccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHH
Q 011741 160 IIMLPLVALTT---QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIG 236 (478)
Q Consensus 160 ~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~ 236 (478)
.|.......++ ++.+..|.++ +|.+||++.++++..++....|.+.|+|+++|++||+|||+|+.||+|+.++.
T Consensus 218 ~I~lla~~~~k~gFns~~~iF~~f---~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~ 294 (550)
T KOG1289|consen 218 MITLLAASSKKTGFNSGSFIFGKF---NNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIA 294 (550)
T ss_pred HHHhhhccCCCCCCCCCceeeecc---cccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHH
Confidence 88777654332 4566678888 78999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc-ChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011741 237 IISIFGWALILALCFSIQ-DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARV 315 (478)
Q Consensus 237 ~~~~~y~l~~~~~~~~~~-~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 315 (478)
+..+...+..+.+...++ |.+.+.++.. |+| +.+.+.+..++. ....+..+.++..+.+..+.+.+.||+
T Consensus 295 i~~i~gw~~~I~i~~~i~~D~~~v~ns~~---g~p-~~~i~~~~lg~k-----~~v~~~~l~ii~~f~~gi~s~~a~SR~ 365 (550)
T KOG1289|consen 295 IGFILGWIIIIGIAYTIPDDLDAVLNSSL---GQP-IVQIYYQALGKK-----GAVFLLSLIIIALFFMGISSLTASSRL 365 (550)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHhcCCC---CCh-HHHHHHHhcCCC-----ceEehhHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999996 5566666555 789 888888888765 446777888888999999999999999
Q ss_pred HHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011741 316 VYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK 395 (478)
Q Consensus 316 l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 395 (478)
.|+.||||.+|++++++|+||++|+|.+|+++..+++.++.++...+..+++.+.+.+....++.|..+.++.+..+|++
T Consensus 366 v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~ 445 (550)
T KOG1289|consen 366 VYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRDD 445 (550)
T ss_pred HhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeecccc
Confidence 99999999999999999999888999999999999999999988888899999999999999999999999888887777
Q ss_pred CCCCCcccCCchhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhcccceeeeCCccccCCC
Q 011741 396 FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNE 474 (478)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (478)
.+++||+.+|.+.+++++++++.++++++..+|...|.+.+++||+.++.+..++++.++|+..+||..++|+.+.++|
T Consensus 446 f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~~~k~f~gP~~~~~~~ 524 (550)
T KOG1289|consen 446 FRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVSARKWFKGPIPSVLEE 524 (550)
T ss_pred cCCCCccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeeecceeecCCccccccc
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999998877665
No 2
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=1.7e-57 Score=469.65 Aligned_cols=444 Identities=33% Similarity=0.661 Sum_probs=367.7
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
.+.+++.+||.+.+++|++++++.++.+++++||++++|++||.|+|++|.+|+++|+..+|++||.+++++....+..+
T Consensus 37 ~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~ 116 (482)
T TIGR00907 37 YNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTD 116 (482)
T ss_pred HHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHH
Confidence 44577789997789999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL- 168 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~- 168 (478)
...++++...+.... .++.+.+++|....+.++++++.+++|.+|.|..++++++..+++++.++++.+..+...+
T Consensus 117 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~ 193 (482)
T TIGR00907 117 LSVAQLILGIVSLTT---PGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSP 193 (482)
T ss_pred HHHHHHHHHHHHhcC---CCCCccccCchhhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 888888887665422 0011445667778888889999999999999999999999999998887765555443322
Q ss_pred cccccccccceeeccCCCC-CCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHH
Q 011741 169 TTQSASYVFTHFEMSPEAT-GISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALIL 247 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~ 247 (478)
+.++.++.++++ .++. +|.+++.+++.++....|+|.|+|.+++++||+|||||++||++..++++..+++++..+
T Consensus 194 ~~~~~~~~~~~~---~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l 270 (482)
T TIGR00907 194 KFNDGKFVFTNF---NNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNI 270 (482)
T ss_pred CCCChhhhheee---eCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 123333345555 2332 566666678888888889999999999999999999999999999999888776665555
Q ss_pred HHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcc
Q 011741 248 ALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPF 327 (478)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 327 (478)
......+|.+++.+.++ ++| ..+.+.+.+ |.+....++....+++.+++.++++.+.+|++++|||||.+|+
T Consensus 271 ~~~~~~~~~~~~~~~~~---~~p-~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~ 342 (482)
T TIGR00907 271 VLFFSMGDIDSLISSTT---GQP-IAQIFYNAL----GNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPF 342 (482)
T ss_pred HHHhcCCCHHHHhcCCC---CCh-HHHHHHHHh----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Confidence 55445535555554333 456 545555544 4444667778888899999999999999999999999999999
Q ss_pred cccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcccCCch
Q 011741 328 SSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKAS 407 (478)
Q Consensus 328 ~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 407 (478)
+++|+|+|||+|+|++|++++.+++.++.+...++.+.++.+.++++...++.|.++..+.+++||+++++||||.++++
T Consensus 343 ~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~~~~~~~~~~f~lg~~~ 422 (482)
T TIGR00907 343 SPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLAKGRNTIAPGPFWLGKYG 422 (482)
T ss_pred hHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCcch
Confidence 99999999888999999999999998877665566778999999999999999999877777666666778899997788
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhcccceeeeCC
Q 011741 408 RPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGP 467 (478)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (478)
+.++.++++++.+.++...+|...|.+.++++|....++..++++.++|..++||++++|
T Consensus 423 ~~~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~~~~~~~~~~~~~~~~~~r~~~~gp 482 (482)
T TIGR00907 423 FFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISLVYWKYKGRKEFTGP 482 (482)
T ss_pred HHHHHHHHHHHHHHHhheeCCCCCCCCcccCChHhHHHHHHHHHHHHHheEeceeeccCc
Confidence 999999999999999999999987888899999999999999999999999999999886
No 3
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=5e-51 Score=419.93 Aligned_cols=424 Identities=21% Similarity=0.308 Sum_probs=327.7
Q ss_pred chhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHH
Q 011741 8 NSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGT 87 (478)
Q Consensus 8 ~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~ 87 (478)
..++.+++.+||. .+|+|+++++.+++.+++++||++++|++||.|+|++|.+||. .||++||.+++++....+.
T Consensus 36 ~~~~~~~~~~Gp~-~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g~~----~gf~~gW~~~~~~~~~~~~ 110 (475)
T TIGR03428 36 QLFGFGYGFGGPA-FFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEV----IGWFAGWFMIIAQIVTAAA 110 (475)
T ss_pred HHHHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcCcc----ccHHHHHHHHHHHHHHHHH
Confidence 3477888999996 9999999999999999999999999999999999999996655 6999999999998877776
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcc-C-chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhe
Q 011741 88 QAYAGSQTLQSIILLCTGTNKDGGYF-A-PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPL 165 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 165 (478)
.......++..+++.......++++. + ..|+..+++++++++.+.+|++|+|..+++|++.+.++++.++++++.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~ 190 (475)
T TIGR03428 111 AAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFT 190 (475)
T ss_pred HHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555554432100000011222 1 235667888888899999999999999999999999999887777666554
Q ss_pred ecccccccccccceeeccCCCCCCCCc-hhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHH
Q 011741 166 VALTTQSASYVFTHFEMSPEATGISSK-PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWA 244 (478)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l 244 (478)
..+ ++.+..+++. .+++.++ ..++..+....+|+|.|+|.+++++||+|||+|++||++..+++++.++|.+
T Consensus 191 ~~~--~~~~~~f~~~-----~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~ 263 (475)
T TIGR03428 191 HAQ--RGPGVVFDTS-----VTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGL 263 (475)
T ss_pred hcC--CCcceeeecC-----CCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHH
Confidence 332 2222222221 0112121 3467778888899999999999999999999999999999999999988888
Q ss_pred HHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCC
Q 011741 245 LILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKG 324 (478)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 324 (478)
..++.....++.++...+.+ +.| ..+.+.. |.++. .++....+++.+++.++.+.+.+|++|++||||.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~---~~p---~~~~~~~----g~~~~-~~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~ 332 (475)
T TIGR03428 264 MILGALMAAPSLTDGRLAAE---GLP---YVLSAVL----DSPWG-TVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGK 332 (475)
T ss_pred HHHHHHHHCCCHHHhhcCCC---chH---HHHHHHh----CcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88887777644333222221 344 4444433 44433 4455666788999999999999999999999999
Q ss_pred CcccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cCC
Q 011741 325 IPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-------KFN 397 (478)
Q Consensus 325 lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~ 397 (478)
+|++++|+|+|||+|+|++|+++.++++.++.++..++.+.|+.+.++++...++.|.++....+++|++ +.+
T Consensus 333 lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~~ 412 (475)
T TIGR03428 333 LPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTDP 412 (475)
T ss_pred CcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCC
Confidence 9966699999999999999999999999888777667778999999999999999999965544443322 246
Q ss_pred CCCcccCCchhhHHHHHHHHHHHHHHHhccCCCCCCCC----CCccchHHHHHHHHHHHHH
Q 011741 398 AGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISW----DTFNYAPVALGVGLGLIML 454 (478)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~ 454 (478)
++||+.+|++++++++++++.++..+...+|...|.+. +++||....++..+++...
T Consensus 413 ~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~P~~~~~~~~~~~~~mny~~~~~~~~~~~~~~ 473 (475)
T TIGR03428 413 AGLFSLGRWGLPVNILAVVYGALMVVNLSWPRPEVYDPSGDGPIMLWSAPIFVGAVLLLGI 473 (475)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcccccchHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999998766655 6999988887777665543
No 4
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=6.2e-50 Score=412.32 Aligned_cols=410 Identities=15% Similarity=0.193 Sum_probs=316.0
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
..+.+++.+||. .+++|+++++++++.+++++||++++|++||.|.|++|.+||+ .||++||.+|+.+....+..
T Consensus 51 ~~g~~~~~aGp~-~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~----~gf~~GW~~~l~~~~~~~~~ 125 (499)
T PRK15049 51 GAGARLQMAGPA-LALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEK----AAYVAGWMYFINWAMTGIVD 125 (499)
T ss_pred hhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcH----hHHHHHHHHHHHHHHHHHHH
Confidence 456788999998 7889999999999999999999999999999999999996665 69999999999987665555
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcc-CchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYF-APKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA 167 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~ 167 (478)
....+.+.... + .+. .+. ...+++++++.+.+|++|+|.++++|++.+.+|++.++.+++.++...
T Consensus 126 ~~a~~~~~~~~-~---------~~~~~~~---~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~ 192 (499)
T PRK15049 126 ITAVALYMHYW-G---------AFGGVPQ---WVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFL 192 (499)
T ss_pred HHHHHHHHHHh-c---------cCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54455554321 1 111 122 245677888899999999999999999999999988888776665421
Q ss_pred ccccc---cccccceeeccCCCCCCCCch-hHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHH
Q 011741 168 LTTQS---ASYVFTHFEMSPEATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGW 243 (478)
Q Consensus 168 ~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~ 243 (478)
...++ ....+... .+.+++.|++ .+++.++..++|+|.|+|.+++++||+|||+|++||++..++..+.++|+
T Consensus 193 ~~~~~~~~~~~~f~~~---~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi 269 (499)
T PRK15049 193 GSGQPLDGNTTGFHLI---TDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYV 269 (499)
T ss_pred hCCCCCCCCCcccccc---cCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 11111 11112222 1222333434 35667778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCC
Q 011741 244 ALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDK 323 (478)
Q Consensus 244 l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg 323 (478)
+........+ |.+++... ++| ..+.+ ... |.++...++.++.+++.+++.++.+++.+|++|+|||||
T Consensus 270 ~~~~~~~~~~-p~~~~~~~-----~sP-~~~~~----~~~-g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg 337 (499)
T PRK15049 270 GSVVLLVMLL-PWSAYQAG-----QSP-FVTFF----SKL-GVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGG 337 (499)
T ss_pred HHHHHHheec-chhccCcC-----CCH-HHHHH----HHc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999988888 77766432 345 33333 222 555577888999999999999999999999999999999
Q ss_pred CCcccccccccccCCCChHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c---CCC
Q 011741 324 GIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-K---FNA 398 (478)
Q Consensus 324 ~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~---~~~ 398 (478)
.+| ++|+|+| |+++|++|++++.+++++..+. ...+.+.++.+.++++...++.|.++..+.+++||+ + +.+
T Consensus 338 ~lP--~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~ 414 (499)
T PRK15049 338 SAP--SFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAAD 414 (499)
T ss_pred CcC--HHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Confidence 999 9999999 8899999999999887664332 234567899999999999999999977666555443 2 235
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhcccc
Q 011741 399 GPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 461 (478)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (478)
||||.| .++..+++++++++..++...+. .+++++......++.++..+.|+.++|
T Consensus 415 ~pf~~~-~~p~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (499)
T PRK15049 415 VSFKLP-GAPFTSWLTLLFLLSVLVLMAFD------YPNGTYTIAALPIIGILLVIGWFGVRK 470 (499)
T ss_pred CCCccc-CccHHHHHHHHHHHHHHHHHHHc------CcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789999 68999999998888777666552 125677777777777777777766443
No 5
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=3.4e-48 Score=396.24 Aligned_cols=404 Identities=15% Similarity=0.120 Sum_probs=303.8
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
.+.+++.+||.+.+++|++++++.++.+++|+|+++++|++||.|.|+++.+||. .||+++|.+++.+....+..+
T Consensus 30 ~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~----~gf~~gw~~~~~~~~~~~~~a 105 (442)
T TIGR00908 30 WNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPW----GGFLAGTAILIEFAFAPPAIA 105 (442)
T ss_pred HhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999878999999999999999999999999999999999999995554 799999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccc
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~ 169 (478)
..+++|+...++. . +. ...+++++++...+|++|+|.++|++.+.+.++++.++++..... .+
T Consensus 106 ~~~~~~l~~~~p~---------~--~~---~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~---~~ 168 (442)
T TIGR00908 106 CFIGAYCESLFPV---------G--PG---WLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMV---PH 168 (442)
T ss_pred HHHHHHHHHHhcc---------C--ch---hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---cc
Confidence 9999998876531 1 22 245567778889999999999999999999998877655543322 11
Q ss_pred ccccccccceeeccCCCCCCCCchh-HHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHH
Q 011741 170 TQSASYVFTHFEMSPEATGISSKPY-AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILA 248 (478)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~ 248 (478)
.++.++..++. .+.+++.+.+. +++.++..++|+|.|+|.+++++||+|||+||+||+++.+..++.++|++....
T Consensus 169 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 169 FDSANLFNGPQ---TGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVV 245 (442)
T ss_pred CCHHHhccCCc---cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 22222221222 12234544443 788888899999999999999999999999999999999999999999988776
Q ss_pred HHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCccc
Q 011741 249 LCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFS 328 (478)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~ 328 (478)
..... +.+++.+.+ +| ..+.+.+.++. ..+...++.+..+++.+++.++.+.+.+|++++|||||.+|
T Consensus 246 ~~g~~-~~~~l~~~~-----~p-~~~~~~~~~g~---~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP-- 313 (442)
T TIGR00908 246 GPGAA-DAKELMGSN-----NP-LPEALESIYGG---STWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLP-- 313 (442)
T ss_pred HhcCC-CHHHhCCCc-----ch-HHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--
Confidence 66555 677775433 34 44555444431 22345666777788889999999999999999999999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccCCCCCcccCCch
Q 011741 329 SIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARM-VMAEQKFNAGPFYLGKAS 407 (478)
Q Consensus 329 ~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 407 (478)
++|+|+| |+|+|++|++++.+++.++.+. .+ .+.+.+++++...+.|.+...+.+ .|||+++.+||||.| .+
T Consensus 314 ~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~--~~---~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p-~~ 386 (442)
T TIGR00908 314 ESLSKVN-RKKAPVLAIVVPGVIGFGLSLT--GQ---TALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTP-GG 386 (442)
T ss_pred HHHHHhC-CCCCcHHHHHHHHHHHHHHHHh--cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCC-Cc
Confidence 9999999 9999999999999999887653 22 356778888888999998655444 555667789999998 66
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhcccceeee
Q 011741 408 RPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT 465 (478)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (478)
++.++++++.+++.++...... .........+.++..++|+.++|+|.+
T Consensus 387 ~~~~~l~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~ 435 (442)
T TIGR00908 387 ILTPGVALVLACVALVTGFYVD---------PRVVVGAVAIFVVLIGYYFLYSRHHLV 435 (442)
T ss_pred chHHHHHHHHHHHHHHHHHHcC---------hHHHHHHHHHHHHHHHHHHhhhhchhh
Confidence 6666666666555444332210 002233455566666666666555443
No 6
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=1.6e-48 Score=405.49 Aligned_cols=407 Identities=18% Similarity=0.195 Sum_probs=319.4
Q ss_pred hccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 15 LYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQ 94 (478)
Q Consensus 15 ~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~ 94 (478)
+.+||+ .+++|+++++.+++.+++|+|+++++|++||.|.|+++. +|+..||++||.+++++....+..+..++.
T Consensus 58 ~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~----~G~~~gfi~GW~~~l~~~~~~a~va~~~s~ 132 (557)
T TIGR00906 58 NDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT----VGELWAFITGWNLILEYVIGTAAVARSWSA 132 (557)
T ss_pred hccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH----hCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999 999999999999999999999999999999999999999 555579999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCC--CccCc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccc
Q 011741 95 TLQSIILLCTGTNKDG--GYFAP--KWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT 170 (478)
Q Consensus 95 ~~~~~~~~~~~~~~~~--~~~~~--~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~ 170 (478)
|+..+++...+....+ +...+ .....+++++++++.+.+|.+|+|.++|+|++.+.+|++.++++++.++.+..
T Consensus 133 yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~-- 210 (557)
T TIGR00906 133 YFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKAD-- 210 (557)
T ss_pred HHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCC--
Confidence 9988875421100000 00000 01223456777888899999999999999999999999998888888775431
Q ss_pred cccccccceeeccCCCCCCCCch-hHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHH
Q 011741 171 QSASYVFTHFEMSPEATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILAL 249 (478)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~ 249 (478)
..++..... .+.+++.|.+ .+++.++..++|+|.|+|.+++++||+|||+||+||+++.+++++.++|++.+++.
T Consensus 211 -~~~~~~~~~---~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 211 -VANWSITEE---KGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred -chhcccccc---ccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 222221111 1222344433 37888999999999999999999999999999999999999999999999999999
Q ss_pred HhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccc
Q 011741 250 CFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSS 329 (478)
Q Consensus 250 ~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~ 329 (478)
...+ |++++.++ +| ..+.+ .. .|.++...++.++.+++.+++.++.+.+.+|++|+|||||.+| +
T Consensus 287 ~~~v-p~~~l~~~------~p-~~~a~----~~-~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP--~ 351 (557)
T TIGR00906 287 TLMM-PYYLLDPD------AP-FPVAF----EY-VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLF--K 351 (557)
T ss_pred hccc-cHHHhCcC------cH-HHHHH----HH-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--H
Confidence 9998 77765322 23 33333 22 2555577888899999999999999999999999999999999 9
Q ss_pred cccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------------
Q 011741 330 IWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ--------------- 394 (478)
Q Consensus 330 ~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--------------- 394 (478)
+|+|+|+|+|+|++|+++.++++.++.++. .++.+.++.+++.++.|.+...+.++.|++
T Consensus 352 ~fakv~~r~~tP~~Ail~~~iv~~il~~~~-----~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~ 426 (557)
T TIGR00906 352 WLAQINSKTKTPINATVVSGAIAALMAFLF-----DLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKD 426 (557)
T ss_pred HHhccCCCCCCcHHHHHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 999999999999999999999998876642 246677888888889998865544333322
Q ss_pred ----------------------------------------------------------------------cCC--CCCcc
Q 011741 395 ----------------------------------------------------------------------KFN--AGPFY 402 (478)
Q Consensus 395 ----------------------------------------------------------------------~~~--~~~~~ 402 (478)
|+. +|+||
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 506 (557)
T TIGR00906 427 TLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFK 506 (557)
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 222 56788
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhcccceeee
Q 011741 403 LGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT 465 (478)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (478)
.| +.|.+++++++.+++++.-. + ..++..+++|+.++.++|+.|.+||.+
T Consensus 507 ~p-~~p~~p~~~i~~~~~l~~~l--~----------~~~~~~~~~w~~~g~~~y~~yg~~~s~ 556 (557)
T TIGR00906 507 VP-LVPFLPALSILINIFLMVQL--D----------ADTWVRFAIWMAIGFLIYFLYGIRHSL 556 (557)
T ss_pred CC-CchHHHHHHHHHHHHHHHcC--C----------HHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 88 88888888888887764322 1 226799999999999999999888764
No 7
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=2.2e-48 Score=400.47 Aligned_cols=433 Identities=15% Similarity=0.145 Sum_probs=318.1
Q ss_pred hhhccCcchhHHHHHHHHHHH-HHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 011741 13 CLLYAGPASLVWGWVVVSFFT-WFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYA 91 (478)
Q Consensus 13 ~~~~~G~~~~~l~~li~~~~~-~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~ 91 (478)
+.+..|++ .+.+|++++++. ++.+++++||++++|++||.|.|++|++||+ .||..+|.+|+++....+.....
T Consensus 24 ~~a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~----~gf~~gw~~w~~~~~~~p~~~~~ 98 (474)
T TIGR03813 24 AEAEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR----WGFLAIFMLWAQVTIWFPTVLTF 98 (474)
T ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888 888888888865 6999999999999999999999999996665 69999999999987665544333
Q ss_pred HHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHhhhhhheecccc
Q 011741 92 GSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWW-QVAGGLVIIIMLPLVALTT 170 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~i~~~~~~~i~~~~~~~~~ 170 (478)
....+....+.. ...+....+.|....+.++++++.+.+|++|+|.++|++++...+ ++++++++++.++......
T Consensus 99 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g 175 (474)
T TIGR03813 99 GAVSLAFIGPEA---TVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVGTIIPAAILVILGISYLLTG 175 (474)
T ss_pred HHHHHHHhcCcc---ccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333332221100 001122234555566777888889999999999999999987554 4555455444443321111
Q ss_pred ccc--ccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHH
Q 011741 171 QSA--SYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILA 248 (478)
Q Consensus 171 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~ 248 (478)
++. +..++++. .+..++. ++..+ ...+|+|.|+|.++..+||+|||+||+||++..+++++.++|++.+++
T Consensus 176 ~~~~~~~~~~~~~--p~~~~~~----~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~ 248 (474)
T TIGR03813 176 GESQIPLRWDDAF--PDFTNFD----NVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLA 248 (474)
T ss_pred CCCCCCCCHHHhC--CCccccc----cHHHH-HHHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 111 11112220 1111221 22222 235789999999999999999999999999999999999999999999
Q ss_pred HHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCccc
Q 011741 249 LCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFS 328 (478)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~ 328 (478)
....+ |.++...+. + ..+.+.+..+.. |.++...++.+...++.+++.++++.+.+|+++++||||.+|
T Consensus 249 ~~~~~-~~~~~~~~~------~-~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP-- 317 (474)
T TIGR03813 249 IAFII-PREDISLTQ------S-LLVAFDNAFHWA-GLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLP-- 317 (474)
T ss_pred HHhcc-CHhhccccc------c-HHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--
Confidence 98888 666653321 1 223444444332 555566777888888999999999999999999999999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHccc--ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccCCCCCcccC
Q 011741 329 SIWRQLHPKHKVPSNAVWLCAAICIILGLPI--LKV-NVVFTAITSICTIGWVGGYAVPIFARMV-MAEQKFNAGPFYLG 404 (478)
Q Consensus 329 ~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~--~~~-~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 404 (478)
++|+|+| |+|+|++|++++.+++.++.+.. ..+ .+.++.+.++++...++.|.+...+.++ |+|+++++||||.|
T Consensus 318 ~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p 396 (474)
T TIGR03813 318 TFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIP 396 (474)
T ss_pred HHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEec
Confidence 9999999 88999999999998866544322 122 4678999999999999999997665544 44667788999996
Q ss_pred --Cc-hhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhccccee--eeCCccccC
Q 011741 405 --KA-SRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKW--FTGPVRNID 472 (478)
Q Consensus 405 --~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 472 (478)
++ .++++.++.+++++.+++..+|+..+.+.++++|....++..+++..+.|+.|+||+ +++|+++.+
T Consensus 397 ~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
T TIGR03813 397 GGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLIYARRKPHWRDPNSNFE 469 (474)
T ss_pred CCccchhHHHHHHHHHHHHHHheeEeCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCcccccc
Confidence 33 467999999999999999999998888899999998998999888999898887665 667754443
No 8
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=2.3e-48 Score=397.87 Aligned_cols=407 Identities=15% Similarity=0.141 Sum_probs=316.7
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
..+.+++.+||. .+++|+++++++++.+++++|+++++|++||.|.|++|.+|| ..||++||.+|+.+....+.+
T Consensus 44 ~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~----~~gf~~gw~~~~~~~~~~~~~ 118 (458)
T PRK10249 44 GIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP----FAGFLSGWNYWVMFVLVGMAE 118 (458)
T ss_pred HHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh----HHHHHHHHHHHHHHHHHHHHH
Confidence 456788899997 999999999999999999999999999999999999999555 479999999999998777777
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec-
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA- 167 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~- 167 (478)
....+.+++.+. ++. + .....++++++...+|++|+|..+|+|...+.+|++.++.+++.++...
T Consensus 119 ~~a~~~~~~~~~---------~~~--~---~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~ 184 (458)
T PRK10249 119 LTAAGIYMQYWF---------PDV--P---TWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLF 184 (458)
T ss_pred HHHHHHHHHHcC---------CcC--c---HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666766432 111 1 2344677888899999999999999999999999987777666554321
Q ss_pred ccccccccccceeeccCCCCCCCCch-hHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHH
Q 011741 168 LTTQSASYVFTHFEMSPEATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALI 246 (478)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~ 246 (478)
...+..+..+++. .++.++.+++ .++..++...+|+|.|+|.+++++||+|||+|++||++..++..+.++|++..
T Consensus 185 ~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~ 261 (458)
T PRK10249 185 SGHGGEKASIDNL---WRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSL 261 (458)
T ss_pred cCCCCCCCChhhc---cCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122221 1111222223 36888999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 247 LALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
......+ |.+++..+ ++| ..+.+.+. +.+....++.++.+++.+++.++.+.+.+|++|+|||||.+|
T Consensus 262 ~~~~~~~-~~~~~~~~-----~~p-~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP 329 (458)
T PRK10249 262 VVLLALY-PWVEVKSN-----SSP-FVMIFHNL-----DSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAP 329 (458)
T ss_pred HHHheec-cccccCcc-----CCc-HHHHHHHc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 8888777 65554322 245 44444433 334467778888899999999999999999999999999999
Q ss_pred ccccccccccCCCChHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccCCCCCcc
Q 011741 327 FSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMA---EQKFNAGPFY 402 (478)
Q Consensus 327 ~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~ 402 (478)
++|+|+| |+|+|++|++++.+++.+..+.. ..+.+.++.+.++++...++.|.++..+.++.| ++++.++|||
T Consensus 330 --~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~ 406 (458)
T PRK10249 330 --KFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFK 406 (458)
T ss_pred --HHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 9999999 77999999999999998876643 445678999999999999999999776665544 3444578999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhccc
Q 011741 403 LGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDA 460 (478)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (478)
.| +++..++++++++...++... ..+++++.....+.+.+...+.|..++
T Consensus 407 ~~-~~p~~~~~~l~~~~~~~v~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (458)
T PRK10249 407 AL-LYPFGNYLCIAFLGMILLLMC-------TMDDMRLSAILLPVWIVFLFVAFKTLR 456 (458)
T ss_pred CC-CccHHHHHHHHHHHHHHHHHH-------HcchHHHHHHHHHHHHHHHHHHHHhee
Confidence 87 899999999998888776653 245677877777777776666665533
No 9
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=2.7e-48 Score=400.85 Aligned_cols=396 Identities=16% Similarity=0.187 Sum_probs=301.8
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPT-TGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGT 87 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~ 87 (478)
+.+.+++.+||.+.+++|+++++++++.+++++|+++++|+ +||.|.|+++.+||+ .||++||.+|+++....+.
T Consensus 25 ~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~----~gf~~gw~~~~~~~~~~~~ 100 (478)
T TIGR00913 25 GSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPA----FGFAVGWNYWLQWLIVLPL 100 (478)
T ss_pred cchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcH----HHHHHHHHHHHHHHHHHHH
Confidence 45678889999868999999999999999999999999995 557778999995555 6999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec
Q 011741 88 QAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~ 167 (478)
.+...+.++.... ++. +.+. ...+++++.+++|++|+|.++++|++.+.+|+..++.+++.++...
T Consensus 101 ~~~~~~~~~~~~~---------~~~--~~~~---~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~ 166 (478)
T TIGR00913 101 ELVTASMTIQYWT---------DKV--NPAV---WIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILN 166 (478)
T ss_pred HHHHHHHHHHHcC---------CCC--CHHH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888776431 111 1111 1234556788999999999999999999999888877766554422
Q ss_pred --ccccccccccceeeccCCCCCCCCc-----hhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHH
Q 011741 168 --LTTQSASYVFTHFEMSPEATGISSK-----PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISI 240 (478)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~ 240 (478)
+.++.....++++ .++++|.+. ..++..++...+|+|.|+|.+++++||+|||+||+||+++.+++++.+
T Consensus 167 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~ 243 (478)
T TIGR00913 167 CGGGPNHGYIGFRYW---HDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILV 243 (478)
T ss_pred HcCCCCCCCCccccc---CCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHH
Confidence 1111111122222 122334332 457888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccChhh--hhcCCC--ccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 011741 241 FGWALILALCFSIQDFSY--LYDKSN--ETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 316 (478)
Q Consensus 241 ~y~l~~~~~~~~~~~~~~--l~~~~~--~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 316 (478)
+|++..++....+ |.++ +.++.. ...++| .. .... ..|.++...++.++.+++.+++.++.+.+.+|++
T Consensus 244 ~Y~l~~~~~~~~~-p~~~~~l~~~~~~~~~~~~p-~~----~~~~-~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 316 (478)
T TIGR00913 244 FYILTLFLIGFLV-PYNDPRLLSSSSSSDSAASP-FV----IAIQ-NHGIKVLPHIFNAVILISVLSAANSSLYASSRTL 316 (478)
T ss_pred HHHHHHHHheeec-cCCChhhcccccCCCcCCCc-HH----HHHH-HcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999888877777 4433 333221 011345 22 2222 2355557788889999999999999999999999
Q ss_pred HHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 011741 317 YALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAE-- 393 (478)
Q Consensus 317 ~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-- 393 (478)
++|||||.+| ++|+|+| |+++|++|++++.+++.+..+.. ..+.+.++.+.++++...++.|.+...+.++.||
T Consensus 317 ~a~ardg~lP--~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~ 393 (478)
T TIGR00913 317 YALAHQGLAP--KIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAM 393 (478)
T ss_pred HHHHhCCccc--HHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999 78999999999999987654432 2345789999999999999999997655554433
Q ss_pred ----ccCCCCCcccCCchhhHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 011741 394 ----QKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWD 436 (478)
Q Consensus 394 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 436 (478)
+++.+||||.| .++..++++++.++..++...+|...|.+.+
T Consensus 394 ~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 439 (478)
T TIGR00913 394 KAQGRSLDELPYKSQ-TGPYGSYYALFFNILILIAQGYVAFAPVKFS 439 (478)
T ss_pred HhcCCCcccCCccCC-CcchHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 23446899998 8888888888888888777777666554433
No 10
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=6.2e-48 Score=394.46 Aligned_cols=373 Identities=16% Similarity=0.123 Sum_probs=283.8
Q ss_pred hhhhhhccC-cchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHH-HHHHHHHHH
Q 011741 10 EEKCLLYAG-PASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLET-IGLIAGMGT 87 (478)
Q Consensus 10 ~~~~~~~~G-~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~-~~~~~~~a~ 87 (478)
++...+.+| |...+++|+++++++++.+++|+|+++++|++||.|.|+++.+||. .||+++|..+ .......+.
T Consensus 32 ~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~g~~----~gf~~gw~~~~~~~~~~~a~ 107 (445)
T PRK11357 32 VGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGSRP----LAFLSGWASFWANDAPSLSI 107 (445)
T ss_pred hHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhcCCh----hHHHHHHHHHHHHHHHHHHH
Confidence 334444445 4457899999999999999999999999999999999999995554 6999999755 445666677
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec
Q 011741 88 QAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~ 167 (478)
.+....+|+.... +. ++.....+++++++++..+|.+|+|..+|+|++.+.+|++.++++++.++...
T Consensus 108 ~a~~~~~y~~~~~----------~~--~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~ 175 (445)
T PRK11357 108 MALAIVSNLGFLT----------PI--DPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWF 175 (445)
T ss_pred HHHHHHHHHHHhc----------CC--chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777777776432 11 22334566777788899999999999999999999999998877777655322
Q ss_pred ccccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHH
Q 011741 168 LTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALIL 247 (478)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~ 247 (478)
.+.+ +..... ...+..+...++..++...+|+|.|+|.+++++||+||||||+||++..++.++.++|++.+.
T Consensus 176 ~~~~---~~~~~~----~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~ 248 (445)
T PRK11357 176 KAEN---FAAPTT----TAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLAL 248 (445)
T ss_pred CCcc---ccCCCc----ccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 1111 100000 000111113468888899999999999999999999999999999999999999999999999
Q ss_pred HHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcc
Q 011741 248 ALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPF 327 (478)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 327 (478)
+..... |.+++.+++ .| ..+.+.+. ..+|.. ...++.+..+++.+++.++++.+.+|++++|+|||.+|
T Consensus 249 ~~~~~~-~~~~l~~~~-----~p-~~~~~~~~--~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp- 317 (445)
T PRK11357 249 VISGLM-PFDKLANSE-----TP-ISDALTWI--PALGST-AGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF- 317 (445)
T ss_pred HHHhcC-CHHHHhcCC-----ch-HHHHHHHH--HhcchH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCch-
Confidence 988887 888876543 24 43444332 112333 45666777888899999999999999999999999999
Q ss_pred cccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcccCCch
Q 011741 328 SSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKAS 407 (478)
Q Consensus 328 ~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 407 (478)
++|+|+|||+|+|++|++++++++.++.+. ..++.+.+..+....+.|.+.....+++||+++.+||||.| ..
T Consensus 318 -~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~~~~~~k~p-~~ 390 (445)
T PRK11357 318 -KCFGHVHPKYNTPDVSIILQGALGIFFIFV-----SDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTP-AF 390 (445)
T ss_pred -HHHHHhCCCCCCCHHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCcccC-Cc
Confidence 999999999999999999999999887653 24566777777777888887665555555666678899998 77
Q ss_pred hhHHHHHHHHHHHHHH
Q 011741 408 RPICLIAFLWICYTCS 423 (478)
Q Consensus 408 ~~~~~~~~~~~~~~~~ 423 (478)
+..++++++..+...+
T Consensus 391 ~~~~~~~~~~~~~~~~ 406 (445)
T PRK11357 391 GLMTTLAIASSLILVA 406 (445)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7777777766655543
No 11
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=9.1e-48 Score=395.33 Aligned_cols=411 Identities=16% Similarity=0.179 Sum_probs=300.5
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
..+.+++.+||.+.+++|+++++++++.+++|+||++++|++||.|.|+++.+||. .||.++|.+|+++....+..
T Consensus 37 ~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~~----~gf~~gw~~~~~~~~~~~~~ 112 (471)
T PRK11387 37 NTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGPA----TGYTVAWLYWLTWTVALGSS 112 (471)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcChH----HHHHHHHHHHHHHHHHHHHH
Confidence 45677888998668999999999999999999999999999999999999995554 79999999999998888777
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec-
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA- 167 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~- 167 (478)
+...+.+++... ++ .+.| ...++++++++.+|++|+|..++.+...+.+|++.++.+++.++...
T Consensus 113 ~~~~~~~~~~~~---------p~--~~~~---~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~ 178 (471)
T PRK11387 113 LTAAGFCMQYWF---------PQ--VPVW---PWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIF 178 (471)
T ss_pred HHHHHHHHHhcc---------Cc--CcHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655544321 11 1222 22344556788999999999999999999999998887776654321
Q ss_pred ---cc-ccccccccceeeccCCCCCCCCch-hHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHH
Q 011741 168 ---LT-TQSASYVFTHFEMSPEATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFG 242 (478)
Q Consensus 168 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y 242 (478)
+. .+.....++++ +..+|.+++ .++..++..++|+|.|+|.+++++||+|||+||+||+++.++.++.++|
T Consensus 179 ~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y 254 (471)
T PRK11387 179 GFIPMQDGSPAPGLRNL----TAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFF 254 (471)
T ss_pred cCCCCCCCCCCCccccc----CCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 00 01111122333 223454433 4788888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCC
Q 011741 243 WALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRD 322 (478)
Q Consensus 243 ~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 322 (478)
++..++....+ |.++...++ +| ..+. +.. .|.++...++.++.+++.+++.++.+++.+|++++||||
T Consensus 255 ~~~~~~~~~~~-p~~~~~~~~-----~p-~~~~----~~~-~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ard 322 (471)
T PRK11387 255 VGTVLVLAALI-PMQQAGVEK-----SP-FVLV----FEK-VGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNE 322 (471)
T ss_pred HHHHHHHheec-CccccCccC-----Ch-HHHH----HHH-cCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 99999888887 666553322 35 3333 333 255557888899999999999999999999999999999
Q ss_pred CCCcccccccccccCCCChHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccC----
Q 011741 323 KGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARM-VMAEQKF---- 396 (478)
Q Consensus 323 g~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~---- 396 (478)
|.+| ++|+|+| |+++|++|++++.+++.+..+.. ..+++.++.+.+++++..++.|.+...+.+ +||++++
T Consensus 323 g~lP--~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~ 399 (471)
T PRK11387 323 GTLP--ACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKA 399 (471)
T ss_pred CCcC--HHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999 9999999 67999999999877665544422 234567888999999999999998655444 3333332
Q ss_pred -CCCCcccCCchhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhcccceee
Q 011741 397 -NAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWF 464 (478)
Q Consensus 397 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (478)
.+||||.| ..+..++++++.++..+....+.+ ++ .........+.+++...|..++|+++
T Consensus 400 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (471)
T PRK11387 400 LSELAYRAP-WYPLTPILGFVLCLLACVGLAFDP------SQ-RIALWCGIPFVALCYGAYYLTQRLKR 460 (471)
T ss_pred CCCCCccCC-CccHHHHHHHHHHHHHHHHHHhhH------HH-HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 25789998 666777777776665544332211 11 11233334444455555555555433
No 12
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=3e-47 Score=388.28 Aligned_cols=384 Identities=17% Similarity=0.159 Sum_probs=298.9
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
+.+.+++.+||. .+++|+++++++++.+++++||++++|++||.|.|++|.+||. .||..+|.+|+.+....+.+
T Consensus 15 ~~g~~~~~aG~~-~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~----~gf~~gw~~~~~~~~~~~~~ 89 (446)
T PRK10197 15 GSSVAIAEAGPA-VLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRW----AGYTIGWLYWWFWVLVIPLE 89 (446)
T ss_pred HhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChH----HHHHHHHHHHHHHHHHHHHH
Confidence 467888999997 9999999999999999999999999999999999999995554 79999999999998888877
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecc
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~ 168 (478)
+.....++.... + ......++++++++.+.+|++|+|..+++|.+.+.+|++.++.+++.++....
T Consensus 90 ~~~~~~~~~~~~---------~-----~~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~ 155 (446)
T PRK10197 90 ANIAAMILHSWV---------P-----GIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAIS 155 (446)
T ss_pred HHHHHHHHHhcc---------c-----cCcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 766665554321 1 11234667888889999999999999999999999999988888776654221
Q ss_pred cccccc--cccceeeccCCCCCCCCchh-HHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHH
Q 011741 169 TTQSAS--YVFTHFEMSPEATGISSKPY-AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWAL 245 (478)
Q Consensus 169 ~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~ 245 (478)
+.++.. ..+++. .+..++.+++. ++..++...+|+|.|+|.++..+||+||||||+||++..+...+.++|++.
T Consensus 156 g~~~~~~~~~~~~~---~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~ 232 (446)
T PRK10197 156 GFYPYAEVSGISRL---WDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCS 232 (446)
T ss_pred CCCCCCCCCcchhc---CCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 111111 111111 11112223333 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCC
Q 011741 246 ILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGI 325 (478)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l 325 (478)
.+.....+ |+++...+. ..+ ..... +. .|.+....++.++.+++.+++.++++.+.+|++|+|||||.+
T Consensus 233 ~~~~~~~~-p~~~~~~~~----~~~-~~~~~-~~----~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~l 301 (446)
T PRK10197 233 IFVVVALI-PWNMPGLKA----VGS-YRSVL-EL----LNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDA 301 (446)
T ss_pred HHHHheec-CcCcccccc----cCc-HHHHH-HH----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99988888 665422111 112 11212 22 255557788888899999999999999999999999999999
Q ss_pred cccccccccccCCCChHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCCCc
Q 011741 326 PFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ---KFNAGPF 401 (478)
Q Consensus 326 P~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~ 401 (478)
| ++|+|+| |+|+|++|++++.+++.+..+.. ..+.+.++.+.+..+...++.|.+...+.++.||+ ++.+++|
T Consensus 302 P--~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~ 378 (446)
T PRK10197 302 P--AVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRL 378 (446)
T ss_pred C--HHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9 9999999 88999999999988887765532 23356799999999999999999976655554442 3346688
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHhccCC
Q 011741 402 YLGKASRPICLIAFLWICYTCSVFLLPT 429 (478)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 429 (478)
|.| +++..+.++++++++.++...+|+
T Consensus 379 ~~~-~~p~~~~~~i~~~~~~~~~~~~~~ 405 (446)
T PRK10197 379 RMW-LYPWLTWLVIGFITFVLVVMLFRP 405 (446)
T ss_pred cCC-CcchHHHHHHHHHHHHHHHHHHCc
Confidence 887 888888888888877776666654
No 13
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=4.4e-47 Score=388.15 Aligned_cols=382 Identities=16% Similarity=0.215 Sum_probs=301.5
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
..+.+++.+||. .+++|+++++++++.+++++|+++++|++||.|+|++|. +|+..||.+||.+++++....+..
T Consensus 35 ~~g~~~~~~Gp~-~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~----~g~~~gf~~Gw~~~~~~~~~~~~~ 109 (456)
T PRK10238 35 GSASVIQSAGPG-IILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY----WGSFAGFASGWNYWVLYVLVAMAE 109 (456)
T ss_pred hhHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH----cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899996 999999999999999999999999999999999999999 555589999999999999888888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhee-c
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV-A 167 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~-~ 167 (478)
....+++++...+ + .+.| ...++++++...+|++|+|..+++|.+.+.+|+..++++++.++.. .
T Consensus 110 ~~~~~~~~~~~~p---------~--~~~~---~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~ 175 (456)
T PRK10238 110 LTAVGKYIQFWYP---------E--IPTW---VSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLF 175 (456)
T ss_pred HHHHHHHHHHhcC---------c--CcHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888765421 1 1233 3455667789999999999999999999999998877766544321 1
Q ss_pred ccccccccccceeeccCCCCCCCCchh-HHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHH
Q 011741 168 LTTQSASYVFTHFEMSPEATGISSKPY-AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALI 246 (478)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~ 246 (478)
...+.+...++++ .+.++|.+++. ++..++..++|+|.|+|.+++++||+|||+|++||++..+...+.++|+...
T Consensus 176 ~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~ 252 (456)
T PRK10238 176 SGNGGPQATVSNL---WDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSL 252 (456)
T ss_pred cCCCCCCcccccc---CCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122332 23345644443 5667777889999999999999999999999999999999999999999987
Q ss_pred HHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 247 LALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
......+ |++++.++ ++| ..+.+.+ . |.+....++....+.+.+++.++++.+.+|++|+|||||.+|
T Consensus 253 ~~~~~~~-p~~~l~~~-----~sP-~~~~~~~----~-g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP 320 (456)
T PRK10238 253 AVLLSLM-PWTRVTAD-----TSP-FVLIFHE----L-GDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAP 320 (456)
T ss_pred HHHheec-ChhccCCC-----CCc-HHHHHHH----c-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 7766666 77776432 346 3333322 2 455567788888999999999999999999999999999999
Q ss_pred ccccccccccCCCChHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-CC--CCCcc
Q 011741 327 FSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FN--AGPFY 402 (478)
Q Consensus 327 ~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~--~~~~~ 402 (478)
++|+|+| |+|+|++|++++.+++.+..+. ...+...++.+.++++...++.|.++..+.+++||++ ++ +++||
T Consensus 321 --~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~ 397 (456)
T PRK10238 321 --KALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFP 397 (456)
T ss_pred --HHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 9999999 6799999999999998877664 3556788999999999999999999877666655443 22 34556
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhccC
Q 011741 403 LGKASRPICLIAFLWICYTCSVFLLP 428 (478)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p 428 (478)
.+ +++..++++++++...++...+.
T Consensus 398 ~~-~~p~~~~~~~~~~~~~~~~~~~~ 422 (456)
T PRK10238 398 AL-LYPLGNWICLLFMAAVLVIMLMT 422 (456)
T ss_pred CC-CccHHHHHHHHHHHHHHHHHHHc
Confidence 55 89999999999888887776553
No 14
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=6.3e-47 Score=386.40 Aligned_cols=366 Identities=14% Similarity=0.126 Sum_probs=285.8
Q ss_pred hhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 13 CLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAG 92 (478)
Q Consensus 13 ~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~ 92 (478)
.++.+|+. .+++|+++++++++.+++|+|+++++|++||.|.|++|.+||. .||+++|.+|+.+.......+...
T Consensus 32 ~~~~~G~~-~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~----~gf~~gw~~~~~~~~~~~~~a~~~ 106 (438)
T PRK10655 32 KLAQVGTI-SILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKS----GNFMANYTYGVSLLIANVAIAISA 106 (438)
T ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcc----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567887 7899999999999999999999999999999999999996665 699999999998877666666666
Q ss_pred HHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccccc
Q 011741 93 SQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQS 172 (478)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~ 172 (478)
.+|...+++ ...+++...++.++++++.+.+|++|+|..+|+|++.+..+++.++++.+.++.... +
T Consensus 107 ~~y~~~~~~----------~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~---~ 173 (438)
T PRK10655 107 VGYGTELFG----------ATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFWFS---P 173 (438)
T ss_pred HHHHHHhcc----------cccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---c
Confidence 677766542 223456666777888899999999999999999999999998888777666553221 1
Q ss_pred cccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 011741 173 ASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFS 252 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~ 252 (478)
.++ ...+ ++.+. +...++..++...+|+|.|+|.+++++||+|||+||+||+++.+..++.++|++........
T Consensus 174 ~~~-~~~~----~~~~~-~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~ 247 (438)
T PRK10655 174 SLY-VAAW----NPHHL-PFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGI 247 (438)
T ss_pred ccc-cCCc----CccCC-chHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111 0111 11122 11246777888899999999999999999999999999999999999999999999888887
Q ss_pred ccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCccccccc
Q 011741 253 IQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWR 332 (478)
Q Consensus 253 ~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~ 332 (478)
. |.+++.+++ .| ..+.+.+.+ |+. ...++.+..+++.+++.++++.+.+|++++|+|||.+| ++|+
T Consensus 248 ~-~~~~l~~~~-----~p-~~~~~~~~~----g~~-~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~ 313 (438)
T PRK10655 248 V-PNMELANST-----AP-FGLAFAQMF----NPT-VGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFP--KIFS 313 (438)
T ss_pred C-CHHHHhhcc-----ch-HHHHHHHHc----Chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--HHHH
Confidence 7 777765433 34 334444444 333 56677788888999999999999999999999999999 9999
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHcccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccCCCCCcccCCchhh
Q 011741 333 QLHPKHKVPSNAVWLCAAICIILGLPILKV--NVVFTAITSICTIGWVGGYAVPIFARM-VMAEQKFNAGPFYLGKASRP 409 (478)
Q Consensus 333 ~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~--~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 409 (478)
|+| |+|+|++|++++.+++.++.+....+ .+.++.+.+++++..++.|.+...+.+ +|||+++.+||||.+ .+
T Consensus 314 ~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~---~~ 389 (438)
T PRK10655 314 RVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVA---NF 389 (438)
T ss_pred hhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHH---HH
Confidence 999 77999999999999888766543322 467899999999999999999766554 455556667888764 24
Q ss_pred HHHHHHHHHHH
Q 011741 410 ICLIAFLWICY 420 (478)
Q Consensus 410 ~~~~~~~~~~~ 420 (478)
+++++.+.+++
T Consensus 390 ~~~~~~~~~~~ 400 (438)
T PRK10655 390 IAFVGALYSFY 400 (438)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 15
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=4.3e-47 Score=389.00 Aligned_cols=410 Identities=18% Similarity=0.211 Sum_probs=311.7
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
.++.+++.+||. .+++|+++++++++.+++++|+++++|++||.|.|+++.+|| ..||+++|.+|+++....+..
T Consensus 35 ~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~----~~gf~~gw~~~~~~~~~~~~~ 109 (452)
T TIGR01773 35 GSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGR----WAGFTIGWLYWWFWVLVIPLE 109 (452)
T ss_pred hhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHH
Confidence 455778899998 788999999999999999999999999999999999999555 479999999999999988888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecc
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~ 168 (478)
+...+.++...++ + .+ ....+++++++...+|.+|+|..+++|+..+.+|++.++.+++.++....
T Consensus 110 ~~~~~~~l~~~~~---------~--~~---~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~ 175 (452)
T TIGR01773 110 AIAAAGILQYWFP---------D--IP---LWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIF 175 (452)
T ss_pred HHHHHHHHHHhcC---------c--Cc---HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888776531 1 12 23467778888899999999999999999999999988877766543211
Q ss_pred ccccc--ccccceeeccCCCCCCCCchh-HHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHH
Q 011741 169 TTQSA--SYVFTHFEMSPEATGISSKPY-AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWAL 245 (478)
Q Consensus 169 ~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~ 245 (478)
..++. ...++++ .+.+++.+++. ++..++...+|+|.|+|.+++++||+|||+|++||++..+...+.++|++.
T Consensus 176 ~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~ 252 (452)
T TIGR01773 176 GFAPGSEVSGFSNL---TGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGS 252 (452)
T ss_pred cCCCCCCCCccccc---cCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1122333 23334444444 689999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCC
Q 011741 246 ILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGI 325 (478)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l 325 (478)
.......+ |.++....+. .| ..+.. . ..|.+....++.++.+++.+++.++.+.+.+|++++|||||.+
T Consensus 253 ~~~~~~~~-p~~~~~~~~~----~p-~~~~~----~-~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~l 321 (452)
T TIGR01773 253 IFIVVALL-PWNSPNLLEV----GS-YVAVL----E-LLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDA 321 (452)
T ss_pred HHHHeeEe-CCCCcccccC----Cc-HHHHH----H-HcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88777666 5443222111 24 22322 2 2255556778888899999999999999999999999999999
Q ss_pred cccccccccccCCCChHHHHHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCCCCccc
Q 011741 326 PFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPIL-KVNVVFTAITSICTIGWVGGYAVPIFARMVMA-EQKFNAGPFYL 403 (478)
Q Consensus 326 P~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~ 403 (478)
| ++|+|+| |+|+|++|++++.+++.+..+... .+++.++.+.+..+...++.|.+.....++.| ++++.+|+|+.
T Consensus 322 P--~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~ 398 (452)
T TIGR01773 322 P--RVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKI 398 (452)
T ss_pred C--HHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 9 9999999 789999999999999988766432 34677899999999888999999655554443 44555566655
Q ss_pred CC-chhhHHHHHHHHHHHHHHHhc-cCCCCCCCCCCccchHHHHHHHHHHHHHhhhcccce
Q 011741 404 GK-ASRPICLIAFLWICYTCSVFL-LPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARK 462 (478)
Q Consensus 404 ~~-~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (478)
+. .++..+++++.++...++... .|.. .+.......+.+....+|+.++||
T Consensus 399 ~~~~~p~~~~~~~~~~~~~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~y~~~~~~ 451 (452)
T TIGR01773 399 RMWLYPWLTWLVIIFICGILVSMLFIPSM--------RDEVLLTGLLTIIVLCSYLVFARR 451 (452)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHcccc--------cHHHHHHHHHHHHHHHHHHHhhcc
Confidence 43 578888888777777666653 3321 345555555666666666665544
No 16
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.4e-46 Score=387.83 Aligned_cols=422 Identities=13% Similarity=0.099 Sum_probs=299.7
Q ss_pred hhhccCcchhHHHHHHHHHH-HHHHHHHHHHHhhhcC-CCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 011741 13 CLLYAGPASLVWGWVVVSFF-TWFVGLAMAEICSSFP-TTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAY 90 (478)
Q Consensus 13 ~~~~~G~~~~~l~~li~~~~-~~~~a~~~~el~~~~p-~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~ 90 (478)
..+..|.. .+..|++++++ .+|.+++++||++++| ++||.|.|++|++|++ .||+++|.+|+......+....
T Consensus 27 ~~a~~G~~-~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~----~Gf~~~~~~W~~~~~~~~~~~~ 101 (507)
T TIGR00910 27 TFATSGFH-LVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGER----FGFAAIFFGWFQIAIGFIPMIY 101 (507)
T ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCcc----HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677877 66666776665 7999999999999997 9999999999997777 4999999999877654443332
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHhhhhhheeccc
Q 011741 91 AGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAG-GLVIIIMLPLVALT 169 (478)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~-~~~~~i~~~~~~~~ 169 (478)
.......+.... ++...+++...+..++++++.+++|++|.|..++++++.....++. .+++++.+......
T Consensus 102 ~~~~~~~y~~~~-------~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~ 174 (507)
T TIGR00910 102 FILGALSYILKF-------PALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIPAFILFALAAAYFHG 174 (507)
T ss_pred HHHHHHHHHhcC-------chhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 222223332211 2333456666777788889999999999999999999876654443 33333333222111
Q ss_pred ccccc--cccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHH
Q 011741 170 TQSAS--YVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALIL 247 (478)
Q Consensus 170 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~ 247 (478)
.++.+ .+.+++ .+ ++.. .+.+..+....|+|.|+|.+++++||+|||+||+||+++.+++++.++|.+..+
T Consensus 175 g~~~~~~~~~~~~---~p--~~~~--~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 175 GAPIAIEIDSHAF---FP--DFSK--VGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred CCccccCCcHHhc---CC--Cccc--ccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 11111 111222 01 1111 123444445678999999999999999999999999999999999999999888
Q ss_pred HHHhhccChhhhhcCCCccCCCccHHHHHHHHhcccc-CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 248 ALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRY-HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
+....+ |.+++..... ..+.+........ +..+...++.+..+++.+++.++++.+.+|+++++||||.+|
T Consensus 248 ~i~~~~-p~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP 319 (507)
T TIGR00910 248 SIAAVI-PGKEINLSAG-------VIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLP 319 (507)
T ss_pred HHheec-ChhhcccchH-------HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcC
Confidence 877777 6666533221 2233333222111 123456677888889999999999999999999999999999
Q ss_pred ccccccccccCCCChHHHHHHHHHHHHHHHcccc----ccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccccCCCCCc
Q 011741 327 FSSIWRQLHPKHKVPSNAVWLCAAICIILGLPIL----KVNVVFTAITSICTIGWVGGYAVPIF-ARMVMAEQKFNAGPF 401 (478)
Q Consensus 327 ~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~----~~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~ 401 (478)
++|+|+| |+++|++|++++++++.++.+... ++...++.+.++++...++.|.+... ...+|+|+++.+|||
T Consensus 320 --~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf 396 (507)
T TIGR00910 320 --AAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTF 396 (507)
T ss_pred --HHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCe
Confidence 9999999 889999999999999887544211 23456778888899999999998654 445566777889999
Q ss_pred ccCC---chhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHH---HHHHHHHHHhhhcccceee
Q 011741 402 YLGK---ASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVAL---GVGLGLIMLWWLLDARKWF 464 (478)
Q Consensus 402 ~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 464 (478)
|.|. ...+++++++++++..+++..+|+..+.+.++++|....+ .+..++..++|..++||++
T Consensus 397 ~~pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~~~~~~ 465 (507)
T TIGR00910 397 NIPGGIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKGH 465 (507)
T ss_pred EecCCccchhhHHHHHHHHHHHHHheeeeCCCccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9972 2468899999999999999989988776667777765554 3345555667766665543
No 17
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=2e-46 Score=383.26 Aligned_cols=379 Identities=18% Similarity=0.173 Sum_probs=291.9
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
+.+.+++.+||. .+++|+++++++++++++++||++++|++||.|.|++|.+||. .||.+||.+|+.+....+.+
T Consensus 33 ~~g~~l~~aGp~-~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~----~Gf~~gw~~~~~~~~~~~~~ 107 (461)
T PRK10746 33 GAASTLKWAGPS-VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPF----FGYLTAWSYWFMWMAVGISE 107 (461)
T ss_pred HhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHH
Confidence 356788899996 8999999999999999999999999999999999999996665 69999999999998887777
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhee--
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV-- 166 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~-- 166 (478)
....+.+++... ++ .+. ....++++++.+.+|++|+|..+++|...+.+|+..++++++.++..
T Consensus 108 ~~a~~~~l~~~~---------p~--~~~---~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~ 173 (461)
T PRK10746 108 ITAIGVYVQFWF---------PE--MAQ---WIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIF 173 (461)
T ss_pred HHHHHHHHHHcc---------CC--Cch---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776543 11 122 23345567788889999999999999999999998887777655421
Q ss_pred -cccccccccccceeeccCCCCCCCCch-hHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHH
Q 011741 167 -ALTTQSASYVFTHFEMSPEATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWA 244 (478)
Q Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l 244 (478)
...++.....++++ .++.++.+++ .++..++..++|+|.|+|.++..+||+|||+|++||++..+...+.++|++
T Consensus 174 ~~~~~~~~~~~~~~~---~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~ 250 (461)
T PRK10746 174 FGFGNGGQSIGFSNL---TEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVG 250 (461)
T ss_pred hCCCCCCCCCccccc---cCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 11111111223343 2223333333 478888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCC
Q 011741 245 LILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKG 324 (478)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 324 (478)
..+.....+ |++|+..+ ++| ..+.+.+. |.+....++.++.+++.+++.++.+++.+|++++|||||.
T Consensus 251 ~~~~~~~~~-p~~~~~~~-----~sp-~v~~~~~~-----g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~ 318 (461)
T PRK10746 251 AIFVIVTIF-PWNEIGSN-----GSP-FVLTFAKI-----GITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQ 318 (461)
T ss_pred HHHHHeeee-CCCCCCCC-----CCc-HHHHHHHh-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 988888887 77776542 346 33443332 4444667888889999999999999999999999999999
Q ss_pred CcccccccccccCCCChHHHHHHHHHHHHHHHc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccC--CC
Q 011741 325 IPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL---PILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAE-QKF--NA 398 (478)
Q Consensus 325 lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l---~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~--~~ 398 (478)
+| ++|+|+| |+|+|++|++++.+...+... ......+.++.+.++++...++.|.+...+.++.|| +++ ++
T Consensus 319 lP--~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~ 395 (461)
T PRK10746 319 LP--AAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIAS 395 (461)
T ss_pred cC--HHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 99 9999999 889999999988655443221 222345678999999999999999997665554443 333 46
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHh
Q 011741 399 GPFYLGKASRPICLIAFLWICYTCSVF 425 (478)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (478)
+|||.| +.+....++++.++..++..
T Consensus 396 ~~~~~~-~~p~~~~~~~~~~~~~~~~~ 421 (461)
T PRK10746 396 HPFRSI-LFPWANYLTMAFLICVLIGM 421 (461)
T ss_pred CCCcCC-CccHHHHHHHHHHHHHHHHH
Confidence 789977 77777777666666554444
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=4.9e-46 Score=380.25 Aligned_cols=364 Identities=16% Similarity=0.168 Sum_probs=283.3
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 16 YAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQT 95 (478)
Q Consensus 16 ~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~ 95 (478)
..|+. .+++|+++++.+++.+++|+|+++++|++||.|.|+++.+|| ..||+++|.+|+.+.......+.....|
T Consensus 37 ~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~----~~gf~~gw~~~~~~~~~~~~~~~~~~~~ 111 (445)
T PRK10644 37 STGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGP----FLGYQTNVLYWLACWIGNIAMVVIGVGY 111 (445)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34665 789999999999999999999999999999999999999555 4799999999998776666655556667
Q ss_pred HHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccccccccc
Q 011741 96 LQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASY 175 (478)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~ 175 (478)
...+.+ ...+++...++.++++++.+.+|.+|+|..+|+|++.+.+|++.++.+++.++..... .++
T Consensus 112 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~---~~~ 178 (445)
T PRK10644 112 LSYFFP----------ILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRG---ETY 178 (445)
T ss_pred HHHHhc----------ccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---hhc
Confidence 665542 1223556667778888899999999999999999999999998888777766542211 111
Q ss_pred ccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 011741 176 VFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQD 255 (478)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~ 255 (478)
...+ +..++ +...++..++...+|+|.|+|.+++++||+|||||++||+++.+++++.++|++..++....+ |
T Consensus 179 -~~~~----~~~~~-~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~-~ 251 (445)
T PRK10644 179 -MAAW----NVSGL-GTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMI-P 251 (445)
T ss_pred -cCCc----ccccc-chHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 0111 11122 123367777888999999999999999999999999999999999999999999999999888 7
Q ss_pred hhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccc
Q 011741 256 FSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLH 335 (478)
Q Consensus 256 ~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~ 335 (478)
.+++..++ .| ..+...+.. |+. ...++.+..+++++++.++++...+|++++|||||.+| ++|+|+|
T Consensus 252 ~~~l~~~~-----~p-~~~~~~~~~----g~~-~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP--~~~~~v~ 318 (445)
T PRK10644 252 NAALRVSA-----SP-FGDAARMAL----GDT-AGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVN 318 (445)
T ss_pred HHHHhcCC-----Ch-HHHHHHHHh----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC
Confidence 77765432 45 445444443 333 56677778888999999999999999999999999999 9999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHcccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCCCCCcccCCchhhHHH
Q 011741 336 PKHKVPSNAVWLCAAICIILGLPILKV--NVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-KFNAGPFYLGKASRPICL 412 (478)
Q Consensus 336 ~~~~~P~~A~~~~~~i~~i~~l~~~~~--~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 412 (478)
|+|+|++|++++++++.++.+....+ .+.++.+.++++...++.|.++..+.++.||| ++.+| | ..+++++
T Consensus 319 -~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~----p-~~~~~~~ 392 (445)
T PRK10644 319 -KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKAR----P-AYLAVTL 392 (445)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc----c-chhHHHH
Confidence 57999999999999998866543222 35789999999999999999977666554443 32233 3 5567788
Q ss_pred HHHHHHHHHHH
Q 011741 413 IAFLWICYTCS 423 (478)
Q Consensus 413 ~~~~~~~~~~~ 423 (478)
++++.+++.++
T Consensus 393 ~~~~~~~~~~~ 403 (445)
T PRK10644 393 IAFVYCIWAVV 403 (445)
T ss_pred HHHHHHHHHHH
Confidence 88887777653
No 19
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=2.6e-46 Score=386.03 Aligned_cols=384 Identities=15% Similarity=0.171 Sum_probs=285.1
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
..+.+++.+||.+.+++|+++++++++.+++|+|+++++|++||.|.|+++.+|+. .||.+||.+|+.+....+..
T Consensus 38 ~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~~----~gf~~Gw~~~~~~~~~~a~~ 113 (489)
T PRK10836 38 ASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEG----FGFALGWNYWYNWAVTIAVD 113 (489)
T ss_pred hhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcChH----HHHHHHHHHHHHHHHHHHHH
Confidence 35578889999768999999999999999999999999999999999999996655 69999999999887666654
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec-
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA- 167 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~- 167 (478)
......++.... ++ .+.+ ..+.+.+++...+|++|+|..++.|+..+..|+..++.+++.++...
T Consensus 114 ~~a~~~~~~~~~---------~~--~~~~---~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~ 179 (489)
T PRK10836 114 LVAAQLVMSWWF---------PD--TPGW---IWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMII 179 (489)
T ss_pred HHHHHHHhhhcC---------CC--CchH---HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433333221 11 1222 23556667788999999999999999999999988877766554321
Q ss_pred -ccccccccccceeeccCCC-CCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHH
Q 011741 168 -LTTQSASYVFTHFEMSPEA-TGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWAL 245 (478)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~ 245 (478)
..+...+..++++ .++ ..+.....++..+....+|+|.|+|.+++++||+|||+||+||+++.++..+.++|++.
T Consensus 180 ~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~ 256 (489)
T PRK10836 180 GIFKGAEPAGWSNW---TIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFA 256 (489)
T ss_pred cCCCCCCCCccccC---CCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122233 111 11211122455555566799999999999999999999999999999999999999999
Q ss_pred HHHHHhhccChhhhh---cCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCC
Q 011741 246 ILALCFSIQDFSYLY---DKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRD 322 (478)
Q Consensus 246 ~~~~~~~~~~~~~l~---~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 322 (478)
.......+ |.++.. ++..+..++| +...+++. |.+....++.++.+++.+++.++.+++.+|++|+||||
T Consensus 257 ~~~~~~~v-p~~~~~~~~~~~~~~~~sp-----~~~~~~~~-g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ard 329 (489)
T PRK10836 257 ILIISLII-PYTDPSLLRNDVKDISVSP-----FTLVFQHA-GLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACD 329 (489)
T ss_pred HHHHheec-CCCChhhhccccccccCCc-----HHHHHHHc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99888888 544322 1111112345 33333333 44446778888999999999999999999999999999
Q ss_pred CCCcccccccccccCCCChHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cC
Q 011741 323 KGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-----KF 396 (478)
Q Consensus 323 g~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-----~~ 396 (478)
|.+| ++|+|+| |+|+|++|++++.+++.+..+. ...+...++.+.++++...++.|.+...+.++.||+ ++
T Consensus 330 g~lP--~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~ 406 (489)
T PRK10836 330 GKAP--RIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHD 406 (489)
T ss_pred CCcC--HHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999 9999999 6799999999999999887664 334456788899999999999999866555554442 34
Q ss_pred C-CCCcccCCchhhHHHHHHHHHHHHHHH
Q 011741 397 N-AGPFYLGKASRPICLIAFLWICYTCSV 424 (478)
Q Consensus 397 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (478)
. +||||.| ..+..++++.+.+++.+..
T Consensus 407 ~~~~p~~~p-~~p~~~~~~~~~~~~~~~~ 434 (489)
T PRK10836 407 LNDLPYRSG-FFPLGPIFAFVLCLIITLG 434 (489)
T ss_pred cCCCCCcCC-CccHHHHHHHHHHHHHHHH
Confidence 3 4799998 7777777777777665543
No 20
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=3.7e-46 Score=382.20 Aligned_cols=405 Identities=13% Similarity=0.191 Sum_probs=302.1
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
.+.+++.+||. .+++|++++++.++.+++++|+++++|++||.|.|++|.+|| ..||++||.+++.+....+...
T Consensus 33 ~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~----~~gf~~gw~~~~~~~~~~~~~~ 107 (457)
T PRK10580 33 SADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGP----LAGYITGWTYCFEILIVAIADV 107 (457)
T ss_pred HHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889998 899999999999999999999999999999999999999555 4799999999999877777666
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhee--c
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV--A 167 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~--~ 167 (478)
...+.+.....+ + .+.+ ...++++++...+|++|+|..+++|.+.+.+|+..++++++.++.. .
T Consensus 108 ~~~~~~~~~~~~---------~--~~~~---~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~ 173 (457)
T PRK10580 108 TAFGIYMGVWFP---------T--VPHW---IWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIW 173 (457)
T ss_pred HHHHHHHHHhCC---------C--CChH---HHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666666654321 1 1122 2344566788999999999999999999999999887766554321 1
Q ss_pred ccccc-cccccce-eeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHH
Q 011741 168 LTTQS-ASYVFTH-FEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWAL 245 (478)
Q Consensus 168 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~ 245 (478)
...+. .....++ + .++..+.....+++.++..++|+|.|+|.+++++||+|||+|++||+++.+++.+.++|++.
T Consensus 174 ~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~ 250 (457)
T PRK10580 174 GIGNGGQPTGIHNLW---SNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGT 250 (457)
T ss_pred CCCCCCCCCCccccC---CCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 00110 0111111 2 12222322223788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCC
Q 011741 246 ILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGI 325 (478)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l 325 (478)
........ |.+++... ++| ....+ . ..|.++...++.+..+.+.+++.++++.+.+|++++|||||.+
T Consensus 251 ~~~~~~~~-p~~~i~~~-----~~p-~~~~~----~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~l 318 (457)
T PRK10580 251 LFVIMSIY-PWNQVGTN-----GSP-FVLTF----Q-HMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSA 318 (457)
T ss_pred HHHHheec-ccCCCCcc-----CCh-HHHHH----H-HcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88887777 77666432 345 32222 1 2255556777788888899999999999999999999999999
Q ss_pred cccccccccccCCCChHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cCCCCC
Q 011741 326 PFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ----KFNAGP 400 (478)
Q Consensus 326 P~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~ 400 (478)
| ++|+|+| |+|+|++|++++.++..+..+. ...+.+.++.+.+++++..++.|.++..+.++.||+ +.++++
T Consensus 319 P--~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~ 395 (457)
T PRK10580 319 P--KIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALK 395 (457)
T ss_pred C--HHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9 9999999 6799999999998765553332 233457789999999999999999977665554443 223458
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHh-ccCCCCCCCCCCccchHHHHHHHHHHHHHhhhccc
Q 011741 401 FYLGKASRPICLIAFLWICYTCSVF-LLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDA 460 (478)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (478)
||.| .++..+.++++++.+.++.. ..|.. .........+.++..+.|..++
T Consensus 396 f~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 396 FKVP-GGVATTIGGLIFLVFIIGLIGYHPDT--------RISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred cccC-CccHHHHHHHHHHHHHHHHHHHCccH--------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9998 88999999988888776654 33321 2233455555555666665554
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=8e-46 Score=381.12 Aligned_cols=377 Identities=16% Similarity=0.129 Sum_probs=292.9
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 011741 12 KCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPT-TGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAY 90 (478)
Q Consensus 12 ~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~ 90 (478)
...+.+||...+++|+++++.+++.+++|+|+++++|+ +||.|.|++|.+||+ .||++||.+|+.+.......+.
T Consensus 33 ~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~~----~gf~~gw~~~~~~~~~~~~~~~ 108 (473)
T TIGR00905 33 NLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGPY----IGFMSGWGYWLSAWIGNVAYAV 108 (473)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcccc----cHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788767899999999999999999999999999 999999999996655 6999999999988777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccc
Q 011741 91 AGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~ 170 (478)
...+++..+++.. +. .+++...+.+++++++...+|.+|+|..+|+|++.+.+|++.++++++.++.... .
T Consensus 109 ~~~~~l~~~~p~~-------~~-~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~-~ 179 (473)
T TIGR00905 109 LLFSALGYFFPLF-------GS-GNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFK-L 179 (473)
T ss_pred HHHHHHHHHhhhh-------cC-CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-c
Confidence 7777877776521 11 1345556777888889999999999999999999999999988888777764321 1
Q ss_pred cccccccceeeccCC-CCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHH
Q 011741 171 QSASYVFTHFEMSPE-ATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILAL 249 (478)
Q Consensus 171 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~ 249 (478)
+ ++.. ++. .+ ..++.+...++..++...+|+|.|+|.+++++||+|| +||+||+++.+++++.++|++...+.
T Consensus 180 ~--~~~~-~~~--~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~ 253 (473)
T TIGR00905 180 D--LFTA-DFW--GHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLS 253 (473)
T ss_pred h--hccc-ccC--ccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 110 01 0012222346888889999999999999999999999 99999999999999999999999998
Q ss_pred HhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccc
Q 011741 250 CFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSS 329 (478)
Q Consensus 250 ~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~ 329 (478)
...+ |.+++.+.+ +|...+...+.. |. +...++.+..+++.+++.++++.+.+|++|+|||||.+| +
T Consensus 254 ~~~~-~~~~l~~~~-----~p~~~~~~~~~~----g~-~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP--~ 320 (473)
T TIGR00905 254 LGVL-PQQELANLP-----NPSMAAVLEMIV----GK-WGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFP--K 320 (473)
T ss_pred HhCc-CHHHHhhCC-----CchHHHHHHHHh----Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--H
Confidence 8887 888876544 231223333333 33 366778888999999999999999999999999999999 9
Q ss_pred cccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcccCCchhh
Q 011741 330 IWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRP 409 (478)
Q Consensus 330 ~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (478)
+|+|+|+ +|+|++|++++.+++.++.+....+.+.++.+.+++++..++.|.+...+.++.|+|++.++ .+.| +.++
T Consensus 321 ~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~-~~~~-~~~~ 397 (473)
T TIGR00905 321 IFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPK-IKNR-KALI 397 (473)
T ss_pred HHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-cccc-hHHH
Confidence 9999995 59999999999999887665444456789999999999999999997766555444332121 2223 6778
Q ss_pred HHHHHHHHHHHHHH
Q 011741 410 ICLIAFLWICYTCS 423 (478)
Q Consensus 410 ~~~~~~~~~~~~~~ 423 (478)
+++++.+++.+...
T Consensus 398 ~~~l~~~~~~~~~~ 411 (473)
T TIGR00905 398 VGVIACVYSIWLLY 411 (473)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888776543
No 22
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=4.2e-46 Score=382.51 Aligned_cols=381 Identities=16% Similarity=0.224 Sum_probs=295.0
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
.+.+++.+||. .+++|++++++.++.+++++|+++..|..||.|.|+++.+| +..||++||.+++++....+.++
T Consensus 44 ~g~~~~~aGp~-~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g----~~~gf~~gW~~~~~~~~~~~a~~ 118 (469)
T PRK11049 44 SGKTISLAGPS-IIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLG----PWAGYFTGWTYWFCWVVTGIADV 118 (469)
T ss_pred hhHHHhhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899996 89999999999999999999999999999999999999955 45799999999999977766667
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec-c
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA-L 168 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~ 168 (478)
.....|+.... ++. +.| ..+++++++.+.+|++|+|..+++|++.+.+|+..++.+++.++... .
T Consensus 119 ~a~~~~~~~~~---------p~~--~~~---~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~ 184 (469)
T PRK11049 119 VAITAYAQFWF---------PDL--SDW---VASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAM 184 (469)
T ss_pred HHHHHHHHHhc---------CCC--cHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67777776543 121 222 33456777889999999999999999999999999998887776532 1
Q ss_pred cccccc---cccceeeccCCCCCCCCchh-HHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHH
Q 011741 169 TTQSAS---YVFTHFEMSPEATGISSKPY-AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWA 244 (478)
Q Consensus 169 ~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l 244 (478)
+.++.+ ..++++ .+..++.|++. ++..++...+|+|.|+|.+++++||+|||+|++||++..+.+.+.++|++
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l 261 (469)
T PRK11049 185 HFQSPTGVEASFAHL---WNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVF 261 (469)
T ss_pred CCCCCCCCCCccccc---CCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHH
Confidence 111111 123332 23334434443 68899999999999999999999999999999999999888899999999
Q ss_pred HHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCC
Q 011741 245 LILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKG 324 (478)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 324 (478)
...+..... |.+++.+.+ +| ..+.+.+ . |.+....++.++.+++.+++.++.+.+.+|++++|||||.
T Consensus 262 ~~~~~~~~~-~~~~~~~~~-----~p-~~~~~~~----~-g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~ 329 (469)
T PRK11049 262 ALIVIMSVT-PWSSVVPDK-----SP-FVELFVL----V-GLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGV 329 (469)
T ss_pred HHHHHeeec-CccccCccC-----Cc-HHHHHHH----c-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 988887776 777765432 34 3333322 2 4454777888889999999999999999999999999999
Q ss_pred CcccccccccccCCCChHHHHHHHHHHHHHHHc-ccccc--HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccccCCC--
Q 011741 325 IPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL-PILKV--NVVFTAITSICTIGWVGGYAVPIFAR-MVMAEQKFNA-- 398 (478)
Q Consensus 325 lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l-~~~~~--~~~~~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~-- 398 (478)
+| ++|+|+| |+|+|++|+++++++..+..+ ....+ .+.++.+.+.++...++.|.++.... .+|||+++.+
T Consensus 330 lP--~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~ 406 (469)
T PRK11049 330 AP--KAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEK 406 (469)
T ss_pred CC--HHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Confidence 99 9999999 569999999999887654222 11222 35789999999999999999865544 4444445544
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHhccC
Q 011741 399 GPFYLGKASRPICLIAFLWICYTCSVFLLP 428 (478)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 428 (478)
||||.| .+++.+++++++++..++...++
T Consensus 407 ~pf~~p-~~~~~~~~~~~~~~~~~~~~~~~ 435 (469)
T PRK11049 407 SIYKMP-LGKLMCWVCMAFFAFVLVLLTLE 435 (469)
T ss_pred CCccCc-CcchHHHHHHHHHHHHHHHHHHc
Confidence 689998 78888888888887776665544
No 23
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=9.4e-46 Score=383.52 Aligned_cols=366 Identities=16% Similarity=0.171 Sum_probs=279.9
Q ss_pred hhhhhhhccCcchh-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHH-HHHHHHH
Q 011741 9 SEEKCLLYAGPASL-VWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETI-GLIAGMG 86 (478)
Q Consensus 9 ~~~~~~~~~G~~~~-~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~-~~~~~~a 86 (478)
.++..++.+|+.+. +++|+++++++++.+++|+|+++++|++||.|.|+++.+||. .||+++|..+. .+....+
T Consensus 65 ~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g~~----~gf~~gw~~~~~~~~~~~a 140 (501)
T TIGR00911 65 SPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGPL----LAFLRLWIELLVIRPGSQA 140 (501)
T ss_pred cHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhCCH----HHHHHHHHHHHHHHHHHHH
Confidence 34566777888644 578999999999999999999999999999999999995554 69999998876 3455566
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhee
Q 011741 87 TQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 166 (478)
..+...++|+.+.+. +++..+.|...+++++++++.+.+|++|+|..+|+|++.+.+|++.++++++.++..
T Consensus 141 ~~a~~~~~y~~~~~~--------~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~ 212 (501)
T TIGR00911 141 VNALNFAIYILTPVF--------PDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQ 212 (501)
T ss_pred HHHHHHHHHHHHHhc--------CCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666533110 344455677778888999999999999999999999999999999888877776653
Q ss_pred cccccccccccc-eeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHH
Q 011741 167 ALTTQSASYVFT-HFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWAL 245 (478)
Q Consensus 167 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~ 245 (478)
....+..+.+.+ .+ + +..++..++..++..++|+|.|+|.+++++||+|||+|++||++..+++++.++|++.
T Consensus 213 ~~~~~~~~~~~~~~f----~--~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~ 286 (501)
T TIGR00911 213 LGKGGVESLNPKNAF----E--GTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLT 286 (501)
T ss_pred hcCCCccccCccccc----C--CCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHH
Confidence 221111111111 11 1 1112245788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCC
Q 011741 246 ILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGI 325 (478)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l 325 (478)
.++....+ |.+++.++.. ....+.+ ..+| ....++.++..++.+++.++.+.+.+|++++|||||.+
T Consensus 287 ~~a~~~~~-~~~~l~~~~~-------~~~~~~~---~~~g--~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~l 353 (501)
T TIGR00911 287 NIAYFTVL-SPEELLASLA-------VAVDFGE---RLLG--VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHL 353 (501)
T ss_pred HHHHHhcC-CHHHHhcChH-------HHHHHHH---HHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99988888 7777754321 1122222 2223 25667788888899999999999999999999999999
Q ss_pred cccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccCCCCCcccC
Q 011741 326 PFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPI-FARMVMAEQKFNAGPFYLG 404 (478)
Q Consensus 326 P~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 404 (478)
| ++|+|+|+|+++|++|++++++++++..+ .+ .+..+.++.++..++.|.+.. ..+..|||+++.+||||.|
T Consensus 354 P--~~~~~v~~~~~~P~~all~~~~i~~l~~~--~~---~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p 426 (501)
T TIGR00911 354 P--SLLSMIHVKRLTPLPSLLIVCTLTLLMLF--SG---DIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVP 426 (501)
T ss_pred c--HHHHHhcCCCCCCHHHHHHHHHHHHHHHc--cC---CHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCc
Confidence 9 99999999999999999999988876544 22 234466778888888999865 4555666778889999998
Q ss_pred CchhhHHH
Q 011741 405 KASRPICL 412 (478)
Q Consensus 405 ~~~~~~~~ 412 (478)
...+.+++
T Consensus 427 ~~~~~l~~ 434 (501)
T TIGR00911 427 LFFPVFFL 434 (501)
T ss_pred hHHHHHHH
Confidence 43333333
No 24
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-46 Score=363.72 Aligned_cols=371 Identities=17% Similarity=0.210 Sum_probs=303.5
Q ss_pred hhhhhhccCcchh-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHH-HHHHHH
Q 011741 10 EEKCLLYAGPASL-VWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGL-IAGMGT 87 (478)
Q Consensus 10 ~~~~~~~~G~~~~-~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~-~~~~a~ 87 (478)
+...++.+|+.+. +.-|+.+++.+++-++||+||++.+|++||+|.|.++++||. .+|...|.-++.. +...+.
T Consensus 36 p~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~afg~~----~aF~~~wvs~l~~~p~~~Ai 111 (479)
T KOG1287|consen 36 PKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEAFGPF----PAFLFLWVSLLIIVPTSAAI 111 (479)
T ss_pred cHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHhccc----hhHHHHHHHHHHHhhhHHHH
Confidence 3456677777654 555899999999999999999999999999999999996655 6999999988764 555699
Q ss_pred HHHHHHHH-HHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhee
Q 011741 88 QAYAGSQT-LQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV 166 (478)
Q Consensus 88 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 166 (478)
.+..+++| ++..+ ++...+.+...+++.+++++.+.+|+.++|...|+|++.+..|++.+.++++.++..
T Consensus 112 ~altF~~Y~l~p~f---------p~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~ 182 (479)
T KOG1287|consen 112 IALTFATYLLKPFF---------PLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYL 182 (479)
T ss_pred HHHHHHHHhhcccC---------CCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchhe
Confidence 99999998 55443 234567788899999999999999999999999999999999999999999999885
Q ss_pred cccccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHH
Q 011741 167 ALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALI 246 (478)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~ 246 (478)
...++..++...++ +.+++ +...+..++....|+|.|||.....+||+|||+||+|||+..++.++.++|++..
T Consensus 183 ~~~g~~~~~~~~~f----~g~~~--~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~N 256 (479)
T KOG1287|consen 183 LFWGSTQNFENSEF----EGSDT--DVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVN 256 (479)
T ss_pred eEeccccccccccc----ccCcC--chHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhH
Confidence 44344443322223 22223 2346888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 247 LALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
++....+ +++|+.+++. .+..+ ++..... ..+++.+.+.++++++.++.+.+.||+++++||+|++|
T Consensus 257 vAy~~vl-s~~e~l~S~a-------Vav~F----a~~~~G~-~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP 323 (479)
T KOG1287|consen 257 VAYFTVL-SPDEILSSDA-------VAVTF----ADRILGV-FAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLP 323 (479)
T ss_pred hheeEec-CHHHhcccch-------HHHHH----HHHhccc-hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCcc
Confidence 9999999 9999865542 22333 3332333 45888999999999999999999999999999999999
Q ss_pred ccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccCCCCCcccCC
Q 011741 327 FSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPI-FARMVMAEQKFNAGPFYLGK 405 (478)
Q Consensus 327 ~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 405 (478)
+.|+.+|+|+.+|..++++++.++++..+. +++++++|..++.....+.+.. ....+|+|+|+.+||+|.|.
T Consensus 324 --~~~s~i~~~~~TP~~allf~~~~~i~~~~~-----~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl 396 (479)
T KOG1287|consen 324 --AFFSMISVRRFTPRPALLFSGLLSIVLSLI-----GDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPL 396 (479)
T ss_pred --HHHHhhcCCCCCChHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeee
Confidence 999999988889999999999999998774 3678999999999999999854 45566667888999999984
Q ss_pred chhhHHHHHHHHHH
Q 011741 406 ASRPICLIAFLWIC 419 (478)
Q Consensus 406 ~~~~~~~~~~~~~~ 419 (478)
..+.+-.+..+.++
T Consensus 397 ~~p~~~~~~~i~lv 410 (479)
T KOG1287|consen 397 FIPILFLLICIFLV 410 (479)
T ss_pred ehHHHHHHHHHHHh
Confidence 44444444444443
No 25
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=8.8e-45 Score=367.31 Aligned_cols=340 Identities=18% Similarity=0.215 Sum_probs=258.5
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
.++.+.+.+||. .+++|+++++++++.+++|+|+++++|++||.|.|+++.+||+ .||.++|.++..+....+..
T Consensus 22 ~~g~~~~~aG~~-~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~----~gf~~gw~~~~~~~~~~~~~ 96 (410)
T PRK11021 22 VPALAALVAGNN-SLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPR----LGRVTGWLFLSVIPVGLPAA 96 (410)
T ss_pred hHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCch----hHHHHHHHHHHHHHhhHHHH
Confidence 356788889997 8999999999999999999999999999999999999996665 69999999998776655544
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecc
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~ 168 (478)
......+....++. +.+....++++++++.+.+|.+|+|.++|+|++++.+.+..+..+. . .+
T Consensus 97 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~~----~-~~ 159 (410)
T PRK11021 97 LQIAAGFGQALFGW------------SSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIW----W-AG 159 (410)
T ss_pred HHHHHHHHHHHcCC------------CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----H-Hc
Confidence 44455566554321 2234456677788889999999999999999998865543322221 1 11
Q ss_pred cccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHH
Q 011741 169 TTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILA 248 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~ 248 (478)
+.++.++.+.+. ++.+| .++..++...+|+|.|+|.+++++||+|||+||+||+++.+.+++.++|++.+.+
T Consensus 160 ~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 160 DIKPADIPFPAP----GSIEW----SGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred CCchhcCCCCCC----CCccH----HHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 122222222221 11122 3688889999999999999999999999999999999999999999999999888
Q ss_pred HHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCccc
Q 011741 249 LCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFS 328 (478)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~ 328 (478)
..... +.++..++ +.| ..+.+.+.+ |.. ...++.+..+++++++.++++.+.+|++++|||||.+|
T Consensus 232 ~~~~~-~~~~~~~~-----~~~-~~~~~~~~~----G~~-~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP-- 297 (410)
T PRK11021 232 VLHFP-AYGDKQAA-----AAS-LPGIFVQLF----GGY-ALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPP-- 297 (410)
T ss_pred HHhcC-CCcchhhc-----ccc-HHHHHHHHh----Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--
Confidence 76655 44443222 233 334444444 433 45667888889999999999999999999999999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011741 329 SIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAE 393 (478)
Q Consensus 329 ~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 393 (478)
++|+|+| |+|+|++|++++.+++.+..+......+.++.+.+.++...++.|.+...+..+.+|
T Consensus 298 ~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~ 361 (410)
T PRK11021 298 SYLARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLK 361 (410)
T ss_pred HHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 779999999999988887665433233567888999999999999997655554433
No 26
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=1.1e-44 Score=369.39 Aligned_cols=397 Identities=16% Similarity=0.172 Sum_probs=305.4
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
.+...+.+|+. .+++|+++++..++.+++++|+++++|++||.|.|.+|.+||+ .|++.+|.+++.+....+..+
T Consensus 27 ~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~----~g~~~gw~~~~~~~~~~a~~~ 101 (429)
T TIGR00909 27 TGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGEL----TAFIIGWSLWLEYGVAVAAVA 101 (429)
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34455667887 8899999999999999999999999999999999999995555 799999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcc-Cc---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhe
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYF-AP---KWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPL 165 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 165 (478)
...++++..+++... .+ .+... .. .....+.+++++++.+.+|++|+|..+|++.+.+.++++.++++++.++.
T Consensus 102 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~ 179 (429)
T TIGR00909 102 VGWGGYLQEFLPGVG-LD-LPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAI 179 (429)
T ss_pred HHHHHHHHHHHHHcc-cc-CchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 999999988876311 00 00000 00 00112456788899999999999999999999999999988776665553
Q ss_pred ecccccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHH
Q 011741 166 VALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWAL 245 (478)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~ 245 (478)
.. +.. +++++ .+. ...++..++...+|+|.|+|.+++++||+|||+|++||+++.+.+++.++|++.
T Consensus 180 ~~---~~~--~~~~~----~~~----~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~ 246 (429)
T TIGR00909 180 HF---ASN--NYTPF----MPM----GFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLV 246 (429)
T ss_pred hC---cHH--hcCCC----CCC----cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHH
Confidence 22 111 12222 111 123678888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCC
Q 011741 246 ILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGI 325 (478)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l 325 (478)
........ |.+++.+++ .| ..+... +. +.++...++.+..+++.+++.++++.+.+|+++++||||.+
T Consensus 247 ~~~~~~~~-~~~~~~~~~-----~~-~~~~~~----~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~l 314 (429)
T TIGR00909 247 AAVILGAV-PWRQLAGST-----AP-LSLVGY----DL-GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLL 314 (429)
T ss_pred HHHHhcCc-CHHHhCCCC-----cH-HHHHHH----Hh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99888777 777775433 24 323332 22 44457788899999999999999999999999999999999
Q ss_pred cccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccCCCCCcccC
Q 011741 326 PFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPI-FARMVMAEQKFNAGPFYLG 404 (478)
Q Consensus 326 P~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 404 (478)
| ++|+|+|+|+++|++|++++++++.++... ..++.+.++.+...++.|.+.. +...+|||+++.+||||.|
T Consensus 315 P--~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~ 387 (429)
T TIGR00909 315 P--GSLSKVHPKTGTPHMSIIIFSLTAALLASL-----VPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCP 387 (429)
T ss_pred c--HHHHHcCCCCCCcHHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 9 999999999999999999999998886542 2357788899999999999854 4445566677888999998
Q ss_pred CchhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhc
Q 011741 405 KASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLL 458 (478)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (478)
..+..+.+....+++..... . ........+++.++..+|..
T Consensus 388 -~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 388 -LVPVLPVLVVSYCIYLLLNL--G----------PGTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred -cchHHHHHHHHHHHHHHHHc--c----------HHHHHHHHHHHHHHHHHHHc
Confidence 66666666655555433211 0 11345566777777776654
No 27
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=7.1e-45 Score=370.18 Aligned_cols=363 Identities=15% Similarity=0.117 Sum_probs=279.0
Q ss_pred hhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 14 LLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGS 93 (478)
Q Consensus 14 ~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~ 93 (478)
++.+||. .+++|+++++.+++.+++++||++++|++||.|.|++| +||+ .||.++|.+|..........+....
T Consensus 32 ~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~----~gf~~gw~~~~~~~~~~~~~~~~~~ 105 (435)
T PRK10435 32 LASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPA----FGFQTGVLYYHANWIGNLAIGITAV 105 (435)
T ss_pred HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888 89999999999999999999999999999999999999 7876 5999999999865555555556666
Q ss_pred HHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccccccc
Q 011741 94 QTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSA 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~ 173 (478)
.|+..+++. . .+++...+++++++++.+.+|.+|+|..++++.+.+.++++.++.+.+.++... ++.
T Consensus 106 ~y~~~~~p~---------~-~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~---~~~ 172 (435)
T PRK10435 106 SYLSTFFPV---------L-NDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWF---DAA 172 (435)
T ss_pred HHHHHHccc---------c-CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHH
Confidence 777665432 1 123344566677888899999999999999999999888877666555444321 111
Q ss_pred ccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011741 174 SYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 253 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~ 253 (478)
++ ..++ ++.+. +...++..++...+|+|.|+|.+++++||+||||||+||++..+..++.++|++..+.....+
T Consensus 173 ~~-~~~~----~~~~~-~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 173 TY-AANW----NTSDT-TDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred hh-cccc----cCCCC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 1122 11111 224578899999999999999999999999999999999999999999999999999998888
Q ss_pred cChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccc
Q 011741 254 QDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQ 333 (478)
Q Consensus 254 ~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~ 333 (478)
|++++.+.+ +| ..+.+.+.. | ++...++.++.+++++++.++++...+|..++|||||.+| |+|+|
T Consensus 247 -p~~~~~~~~-----~p-~~~~~~~~~----g-~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP--~~f~k 312 (435)
T PRK10435 247 -PASVMAASG-----AP-FAISASTIL----G-NWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFP--KVYGE 312 (435)
T ss_pred -CHHHHhcCC-----Cc-HHHHHHHHh----c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHh
Confidence 888875433 45 434443333 3 3367778888889999999999999999999999999999 99999
Q ss_pred cccCCCChHHHHHHHHHHHHHHHcc----ccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcccCCc
Q 011741 334 LHPKHKVPSNAVWLCAAICIILGLP----ILK---VNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKA 406 (478)
Q Consensus 334 ~~~~~~~P~~A~~~~~~i~~i~~l~----~~~---~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 406 (478)
+| |+|+|++|++++.+++.++... ... ..+.++.+.++++...++.|++...+.+++|| ++ +|.+ .
T Consensus 313 ~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~-~~----~~~~-~ 385 (435)
T PRK10435 313 VD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEG-VN----IRNF-V 385 (435)
T ss_pred hC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cc----hhHH-H
Confidence 99 7899999999998877654421 111 24689999999999999999998877765533 22 2322 4
Q ss_pred hhhHHHHHHHHHHHHH
Q 011741 407 SRPICLIAFLWICYTC 422 (478)
Q Consensus 407 ~~~~~~~~~~~~~~~~ 422 (478)
.+..+.++.+++++.+
T Consensus 386 ~~~~~~~~~~~~~~~~ 401 (435)
T PRK10435 386 SLICSVLGCVFCFIAL 401 (435)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777766666654
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=1.8e-44 Score=370.68 Aligned_cols=379 Identities=17% Similarity=0.126 Sum_probs=284.6
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTT-GSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~-GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
++...+.+||...+++|+++++.+++.+++++|+++++|++ ||.|.|++|.+|| ..||+++|.+|+++.......
T Consensus 25 ~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~----~~gf~~gw~~w~~~~~~~~~~ 100 (468)
T TIGR03810 25 PSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP----FMGFISAWGYWLSAWLGNVAY 100 (468)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc----HHHHHHHHHHHHHHHHHHHHH
Confidence 34556678887688999999999999999999999999986 5999999999555 579999999999887666655
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecc
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~ 168 (478)
+.....+....++.. +. .++......+.+++++...+|.+|+|..+++|++.+.+|+++++.+++.++....
T Consensus 101 ~~~~~~~~~~~~p~~-------~~-~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~ 172 (468)
T TIGR03810 101 ATLLFSTLGYFFPIF-------GG-GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVIGIFAFK 172 (468)
T ss_pred HHHHHHHHHHhcccc-------cC-CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555556655544321 11 1223345566777888999999999999999999999999988888776654321
Q ss_pred cccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHH
Q 011741 169 TTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILA 248 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~ 248 (478)
.....+..+++. .+..++.+...++..++...+|+|.|+|.++.++||.|| +||+||++..+++.+.++|++.+..
T Consensus 173 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~ 248 (468)
T TIGR03810 173 GDTFTNDFWGNA---NGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVL 248 (468)
T ss_pred HhhcCccccccc---cccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 111000001111 001112222235667888899999999999999999999 7999999999999999999999999
Q ss_pred HHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCccc
Q 011741 249 LCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFS 328 (478)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~ 328 (478)
....+ |.+++.+.++ |...+...+.. | ++...++.++.+++.+++.++++.+.+|++++|||||.+|
T Consensus 249 ~~g~~-~~~~l~~~~~-----p~~~~~~~~~~----g-~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP-- 315 (468)
T TIGR03810 249 SYGIM-TQAQLAGLKN-----PSMAYVLEHMV----G-TWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMP-- 315 (468)
T ss_pred HHhCc-CHHHHhcCCC-----chHHHHHHHHc----c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--
Confidence 88888 8887765332 31223333332 3 3367888999999999999999999999999999999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC--CCCCcccCCc
Q 011741 329 SIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKF--NAGPFYLGKA 406 (478)
Q Consensus 329 ~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~ 406 (478)
++|+|+| |+|+|++|++++.+++.++.+....+.+.++.+.++++...++.|.+...+.++.|+|++ .+|++
T Consensus 316 ~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~----- 389 (468)
T TIGR03810 316 KYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRK----- 389 (468)
T ss_pred HHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh-----
Confidence 9999999 789999999999999877665444456899999999999999999997665555443321 12222
Q ss_pred hhhHHHHHHHHHHHHHH
Q 011741 407 SRPICLIAFLWICYTCS 423 (478)
Q Consensus 407 ~~~~~~~~~~~~~~~~~ 423 (478)
..++++++.+++++.+.
T Consensus 390 ~~~~~~l~~~~~~~~~~ 406 (468)
T TIGR03810 390 QLLIGLVALLYAVWLIY 406 (468)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 24667777777766544
No 29
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-44 Score=344.08 Aligned_cols=411 Identities=16% Similarity=0.212 Sum_probs=339.6
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
-+.+++.+||+ .+++++++++++..+.-...|+..+-|++|+..+|+++. +|++.||.+||.||+.++.......
T Consensus 37 Sg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~----lG~~Agf~tgW~YW~~wv~v~~ae~ 111 (462)
T COG1113 37 SGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKY----LGPWAGFLTGWTYWFFWVLVGIAEL 111 (462)
T ss_pred cchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999 999999999999999999999999999999999999999 5555899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL- 168 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~- 168 (478)
.+.+.|++..++ +. + ..+.+++.+++...+|..++|..+.++.....+|++.++.+++.+.....
T Consensus 112 tAi~~y~~~WfP---------~v--P---~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~ 177 (462)
T COG1113 112 TAIGIYLQFWFP---------DV--P---QWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFG 177 (462)
T ss_pred HHHHHHHHHhcC---------CC--c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999998762 32 3 34556678889999999999999999999999999999998887765321
Q ss_pred --cccccccccceeeccCCCCCCCCchh-HHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHH
Q 011741 169 --TTQSASYVFTHFEMSPEATGISSKPY-AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWAL 245 (478)
Q Consensus 169 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~ 245 (478)
+.+.....+++. .+++|+.|++. +++.++..++|+|.|.|.+...++|+|||+|.+|||+-.-..-+.++|+..
T Consensus 178 g~~~~~~~~g~snl---~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgs 254 (462)
T COG1113 178 GFGGGGGAAGFSNL---WDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGS 254 (462)
T ss_pred ccCCCCCCcccccc---ccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHH
Confidence 111223345555 46677888775 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCC
Q 011741 246 ILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGI 325 (478)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l 325 (478)
...+.... |++++.+++ +| +...+.+. |-+....++++.++.+.+++.|+.+++.+|++|.+|+||..
T Consensus 255 l~vi~~l~-PW~~~~~~~-----SP-----FV~~f~~i-Gi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~A 322 (462)
T COG1113 255 LFVILSLY-PWNQIGEDG-----SP-----FVTVFSLI-GIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDA 322 (462)
T ss_pred HHHHheec-cccccCCCC-----Cc-----HHHHHHHc-CCcccccceeEEEeechhhcccccccccchHHHHHhhcCcc
Confidence 88888888 999886644 56 44555544 77878899999999999999999999999999999999999
Q ss_pred cccccccccccCCCChHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cC--CCCCc
Q 011741 326 PFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-KF--NAGPF 401 (478)
Q Consensus 326 P~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~--~~~~~ 401 (478)
| |.++|+| |+|+|++|++++.+..++..++ +..+...|+.+.+.++.+.+..|.++..+.++.||+ ++ ++.+|
T Consensus 323 P--k~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~f 399 (462)
T COG1113 323 P--KAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKF 399 (462)
T ss_pred c--HhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCccc
Confidence 9 9999999 8899999999999988887764 334578999999999999999999987777766553 22 33468
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhcccceeee
Q 011741 402 YLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT 465 (478)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (478)
|.| +.+..+.+.++++....+...+.. +.++......++.++..++|+.++||+++
T Consensus 400 km~-~~p~~~~l~l~fl~~vlv~m~~~~-------~t~~~~~~~~~~~~~l~i~~~~~~~~~~~ 455 (462)
T COG1113 400 KMP-LYPFTNYLTLAFLAFVLVLMLFDP-------DTRISLLVGPVWLVLLGIGYLVKRKKKAR 455 (462)
T ss_pred ccc-cccHHHHHHHHHHHHHHHHHHcCc-------ccchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 888 788888888777777766665432 11345566666666666666665544433
No 30
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-44 Score=349.16 Aligned_cols=394 Identities=16% Similarity=0.222 Sum_probs=317.6
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
+.|.+++.+||+++++++++.++++.++..+..||+..+|.+|+...|++|..+ +-.||..||.||+.|....+.+
T Consensus 67 gsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd----pa~GFa~gWnYw~~w~v~~~~E 142 (541)
T COG0833 67 GSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD----PAFGFALGWNYWLNWAVTLPLE 142 (541)
T ss_pred ecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC----chHHHHHHHHHHHHHHHHhhHH
Confidence 457899999999999999999999999999999999999999999999999955 4579999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecc
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~ 168 (478)
....+..++...+ +. .+.+. ...++.+++.++|.+|+|..+-.+..+..+|++.++.+++.+++..-
T Consensus 143 l~aa~~vi~yW~p---------~~-v~~~~---w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~ 209 (541)
T COG0833 143 LTAASLVIQYWFP---------DT-VPPWI---WIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIIC 209 (541)
T ss_pred HHHHHHhhhhhcC---------CC-CChHH---HHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988888887532 11 23332 33467778899999999999999999999999999999888876421
Q ss_pred cc-cccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHH
Q 011741 169 TT-QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALIL 247 (478)
Q Consensus 169 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~ 247 (478)
+. +..++...++- .++..+.+.+.++...+..+.|+|.|.|.+...++|.|||+|++|||+.-...-+.++|++..+
T Consensus 210 Gg~~~~~~ig~~yw--~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi~si~ 287 (541)
T COG0833 210 GGGPTHGYIGFNYW--HDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIF 287 (541)
T ss_pred CCCCCCCCcceeee--cCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11 11122222220 2344454445589999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccChh--hhhcCCC-ccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCC
Q 011741 248 ALCFSIQDFS--YLYDKSN-ETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKG 324 (478)
Q Consensus 248 ~~~~~~~~~~--~l~~~~~-~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 324 (478)
.+...+ |++ ++..+++ +...+| +..++.+. |.+....+++.+++.+++++.|+.+++.+|++|+||+||.
T Consensus 288 ~ig~lv-Py~dp~Ll~~~~~~~~~SP-----Fvia~~~~-Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~ 360 (541)
T COG0833 288 VIGLLV-PYNDPRLLGNSSSGVAASP-----FVIAIKNA-GIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGK 360 (541)
T ss_pred HheEEc-cCCCcccccCCcCCccCCC-----hhHhHHhc-CCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCC
Confidence 988888 543 3332221 223456 44445444 6777899999999999999999999999999999999999
Q ss_pred CcccccccccccCCCChHHHHHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------cCC
Q 011741 325 IPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPIL-KVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ------KFN 397 (478)
Q Consensus 325 lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~------~~~ 397 (478)
.| |+|+|+| |+|+|++|++++..++++..+-.. .+...|+++.+++++..++.|+.++.+.++.||. ..+
T Consensus 361 AP--k~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG~s~~ 437 (541)
T COG0833 361 AP--KIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRSLD 437 (541)
T ss_pred Cc--hHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 99 9999999 889999999999999998776322 3345999999999999999999888777776642 233
Q ss_pred CCCcccCCchhhHHHHHHHHHHHHHHHhccCCCCC
Q 011741 398 AGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYP 432 (478)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 432 (478)
+-|||.| ..+..++.+++.+.+.++...+....|
T Consensus 438 ~L~yks~-~~p~g~~~~~~~~~li~i~q~y~af~p 471 (541)
T COG0833 438 ELPYKSP-FGPYGPIYGLILCILILIGQGYVAFFP 471 (541)
T ss_pred hcCccCC-CccHHHHHHHHHHHHHHHHcchheeec
Confidence 4689998 888888888887777766655444444
No 31
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=1.5e-42 Score=358.61 Aligned_cols=437 Identities=15% Similarity=0.140 Sum_probs=293.8
Q ss_pred hhhhhccCcchhHHHHHHHH-HHHHHHHHHHHHHhhhcCC-CCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 11 EKCLLYAGPASLVWGWVVVS-FFTWFVGLAMAEICSSFPT-TGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 11 ~~~~~~~G~~~~~l~~li~~-~~~~~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
+.+++.+|++ .+++|++++ +..++.+++++|+++++|+ +||.|+|+++++||++ ||+.+|.+|.++.......
T Consensus 29 ~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~~----gf~~~w~~~~~~~~~~~~~ 103 (496)
T PRK15238 29 PRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPKF----AFIGTFMWFASYIIWMVST 103 (496)
T ss_pred HHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCchH----HHHHHHHHHHHHHHHHHHH
Confidence 4557788998 444555544 5578999999999999997 8999999999977774 8888888777766544332
Q ss_pred HH-HHHHHHHHHHHHhcCCCC-CCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh---
Q 011741 89 AY-AGSQTLQSIILLCTGTNK-DGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIML--- 163 (478)
Q Consensus 89 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~--- 163 (478)
+. ........+++....... ..+. ..+.....+++..+++.+.+|.+|+|.++|++++.+.+++...+++++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~ 182 (496)
T PRK15238 104 ASKIWIPFSTFIFGKDTTQTWHFLGL-NSTQVVGILAVIWMILVTFVASKGINKIAKVTSIGGIAVMLLNIVLLLVSIII 182 (496)
T ss_pred HHHHHHHHHHHHcCcchhhhhhhhcc-cchHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111111111110000000 0011 11222335566666789999999999999999998887765433222211
Q ss_pred heecccccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHH
Q 011741 164 PLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGW 243 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~ 243 (478)
+...++........+++.. ....+|.+ +.+++.++..+.|+|.|+|.+++++||+|||||++||++..+.+.+.++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~ 260 (496)
T PRK15238 183 LILNGGHFAQPIGVSSFVT-SPNPAYQS-PIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYS 260 (496)
T ss_pred HHHcCCCccccccHhhccc-CCCCcccc-chHHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHH
Confidence 1111111111111122200 01113322 356777888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccChhhhhcCCCc-cCCCccHHHHHHHHhc----cccCC---------chhHHHHHHHHHHHHHHHHHHHH
Q 011741 244 ALILALCFSIQDFSYLYDKSNE-TAGAFVPAQILYDAFH----GRYHN---------STGAIILLIVIWGSFFFGGLSVT 309 (478)
Q Consensus 244 l~~~~~~~~~~~~~~l~~~~~~-~~g~p~~~~~~~~~~~----~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~ 309 (478)
+..+...... |.++..++++. ....| ....+..+ +.+|. .+...++.+..+++.+++.+.+.
T Consensus 261 l~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 336 (496)
T PRK15238 261 LAIFLWGVST-NWQQVLSNKSVNLGNIT---YVLMNNLGYTLGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFTLS 336 (496)
T ss_pred HHHHHHHhcC-chhhcCCccccchhccH---HHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887776666 76666543321 11122 11111111 11111 22444667888999999999999
Q ss_pred hhhhhhHHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHcc-ccc---cHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 310 TSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILK---VNVVFTAITSICTIGWVGGYAVPI 385 (478)
Q Consensus 310 ~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~-~~~---~~~~~~~l~~~~~~~~~~~~~l~~ 385 (478)
.+.+|.+++++|||.+| |+|+|+| |+|+|++|++++.++..+..+. ..+ .++.|+.+.++++...++.|.+..
T Consensus 337 ~~~~r~~~~~~~~g~~P--~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~ 413 (496)
T PRK15238 337 YSPLKQLIEGTPKALWP--KKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLA 413 (496)
T ss_pred HhhHHHHHhhCccCccc--HHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999 8899999999999888876542 222 244589999999999999999988
Q ss_pred HHHHhhccccCCCCCcccC---CchhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhcccce
Q 011741 386 FARMVMAEQKFNAGPFYLG---KASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARK 462 (478)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (478)
.+.+++||+++.+|||+.+ +++..++++++++++....+..+++. ..+++++....++..+++..+.|..|++|
T Consensus 414 ~a~i~~r~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 490 (496)
T PRK15238 414 GAFPFFKKKKDIDRPFVVFKTKKSTLIATIVVVLVVGFANVFTIIQPV---IEGDYQSTFWMIGGPVFFSILAWIIYQNY 490 (496)
T ss_pred HHHHHHhhccCCCCCceecCCcceehhHHHHHHHHHHHHHHHheeCCC---cCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777778888773 36677888888888777666655542 22456776666666666676767776655
Q ss_pred eee
Q 011741 463 WFT 465 (478)
Q Consensus 463 ~~~ 465 (478)
+++
T Consensus 491 ~~~ 493 (496)
T PRK15238 491 EKK 493 (496)
T ss_pred chh
Confidence 443
No 32
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=6.6e-43 Score=356.24 Aligned_cols=387 Identities=24% Similarity=0.354 Sum_probs=299.0
Q ss_pred hhhccCcchhHHHHHHHHHHH-HHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 011741 13 CLLYAGPASLVWGWVVVSFFT-WFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYA 91 (478)
Q Consensus 13 ~~~~~G~~~~~l~~li~~~~~-~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~ 91 (478)
..+.+|+. .+++|++++++. ++.+++|+|+++++|++||.|.|+++.+||+ .|++++|.+++++....+..+..
T Consensus 24 ~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~----~g~~~~~~~~~~~~~~~~~~~~~ 98 (426)
T PF13520_consen 24 AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPF----WGFIVGWLYWVAYILSLASVASS 98 (426)
T ss_dssp HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhccccc----chhcccceeEEEeeccccccccc
Confidence 45678998 888888888887 8999999999999999999999999995555 79999999999999998888888
Q ss_pred HHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHhhhhhheecccc
Q 011741 92 GSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQV-AGGLVIIIMLPLVALTT 170 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i-~~~~~~~i~~~~~~~~~ 170 (478)
..+++...++ +++.++++...+++++++++...+|++|.|..+|++++.+.+++ ..++++++.++.....+
T Consensus 99 ~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~ 170 (426)
T PF13520_consen 99 FASYLLSLFG--------PDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFS 170 (426)
T ss_dssp HHHHHTTTTT--------GGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred hhhhhhhccc--------cccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeeccc
Confidence 8888876543 23445577888999999999999999999999999999999999 56666666666543221
Q ss_pred ccc--ccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHH
Q 011741 171 QSA--SYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILA 248 (478)
Q Consensus 171 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~ 248 (478)
... +...+++ .+++++ +++.++...+|+|.|+|++++++||.|| ||+||++..+.+++.++|++..++
T Consensus 171 ~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~ 240 (426)
T PF13520_consen 171 GFNSLSFSLSTF----FPSGWP----GFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYILFSIA 240 (426)
T ss_dssp HHH----SHSCS----SCSSSS----HHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccc----CCcccc----chhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHhhhhhe
Confidence 111 0111122 222343 4778889999999999999999999877 899999999999999999999999
Q ss_pred HHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCccc
Q 011741 249 LCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFS 328 (478)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~ 328 (478)
..... |.++....++ ..+......... +.++...++.+..+++++++.++.+.+.+|++++|+|||.+|
T Consensus 241 ~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP-- 309 (426)
T PF13520_consen 241 LLGAL-PDDELANSSN-------SPSPFAVLASAV-GGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLP-- 309 (426)
T ss_dssp HHTTS-THCHHHTTTC-------HHCHHHHHHHHH-HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--
T ss_pred eeecc-cchhhhcccc-------cccccchhhccc-cccccccccccccccccccccchhhcchhhcccccccccchh--
Confidence 99998 7777754332 112233333333 333588888999999999999999999999999999999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccccCCCCCcccCCc
Q 011741 329 SIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFAR-MVMAEQKFNAGPFYLGKA 406 (478)
Q Consensus 329 ~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 406 (478)
++++|+| |+|+|++|+++.++++.++.+.. ..+.+.++.+.+..++...+.|.+..... ..|+|+++.+| .+ .
T Consensus 310 ~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r---~~-~ 384 (426)
T PF13520_consen 310 KWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR---IP-Y 384 (426)
T ss_dssp GGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH----H-H
T ss_pred hhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC---CC-c
Confidence 9999999 99999999999999997765432 22346788999999999999999865544 44444444444 11 2
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCCCCCCCc
Q 011741 407 SRPICLIAFLWICYTCSVFLLPTFYPISWDTF 438 (478)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 438 (478)
.++.++++.+..++..+....|...+...+.+
T Consensus 385 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (426)
T PF13520_consen 385 RPPVGIIGIIIILFVIIASFFPLINPATWASL 416 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHSHCCCC-HC
T ss_pred chHHHHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 35677777777777777776665444333333
No 33
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=7.3e-41 Score=362.37 Aligned_cols=395 Identities=15% Similarity=0.080 Sum_probs=293.1
Q ss_pred chhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHH
Q 011741 8 NSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSS-FPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMG 86 (478)
Q Consensus 8 ~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~-~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a 86 (478)
.+++.....+|....++.|+++++++++.+++|+|+++. +|++||.|.|++|++||+ .|+..||.+++++....+
T Consensus 99 lr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisralGp~----~Gf~iG~~~~la~~va~A 174 (953)
T TIGR00930 99 LRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSLGPE----FGGSIGLIFAFANAVAVA 174 (953)
T ss_pred eeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHH
Confidence 356788888998878899999999999999999999998 999999999999997766 599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCc-cCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhe
Q 011741 87 TQAYAGSQTLQSIILLCTGTNKDGGY-FAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPL 165 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 165 (478)
.++..+++|+..+++... ... ..+.....+++++++++++++|++|+|..+|+|.++++++++.++.+++.++.
T Consensus 175 ~~~~Gf~eyl~~lf~~~~-----~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~ 249 (953)
T TIGR00930 175 MYVVGFAETVLDLLRENG-----SKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQVLFLVIVLLSILNIFVGTII 249 (953)
T ss_pred HHHHHHHHHHHHHhhhcc-----cccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHheeee
Confidence 999999999988875311 001 11122346788899999999999999999999999999999998888776654
Q ss_pred ecccccc---cccccceeeccCC-CCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHH
Q 011741 166 VALTTQS---ASYVFTHFEMSPE-ATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIF 241 (478)
Q Consensus 166 ~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~ 241 (478)
....... .++..+.+. .+ ..++.....++...+...+++|+|+|+.++++||+|||+|++||+++.+++++.++
T Consensus 250 ~~~~~~~~g~~~~~~~~f~--~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vl 327 (953)
T TIGR00930 250 PAFDKPAKGFFGLGNEIFS--ENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVV 327 (953)
T ss_pred cCCCCCccceeeccchhhh--hccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHH
Confidence 2211100 011111120 00 01121111136666666778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccChhhhhcCCCc----cCCC---------ccHHHHHH---HHhccccCCchhHHHHHHHHHHHHHHHH
Q 011741 242 GWALILALCFSIQDFSYLYDKSNE----TAGA---------FVPAQILY---DAFHGRYHNSTGAIILLIVIWGSFFFGG 305 (478)
Q Consensus 242 y~l~~~~~~~~~~~~~~l~~~~~~----~~g~---------p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 305 (478)
|++..+...... +.+...+..+. ..|. | ....+. ..... ... ...++.++++++++++.
T Consensus 328 Yllv~~~~~~~~-~~d~~~~~~~~l~~~~~g~~~f~~~~~~p-~~~gL~~~~~~~~~--~~~-~~~lI~ig~~~stlss~ 402 (953)
T TIGR00930 328 YLGSVVLFGACV-VRDATGDKNDTLVTNCTSAACFSECAHNT-CSYGLMNNLQVMSL--VSP-FPPLITAGIFSATLSSA 402 (953)
T ss_pred HHHHHHHHHccc-cHhhhcccchhhhcccccchhhhhhcccc-hhhhhcchHHHHhh--hhh-hHHHHHHHHHHHHHHHH
Confidence 999998776666 44332211100 0000 0 000000 01111 111 45788889999999999
Q ss_pred HHHHhhhhhhHHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 306 LSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPI 385 (478)
Q Consensus 306 ~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 385 (478)
++++.+.+|++++|||||.+|+.++|+|+|+|+++|++|++++++++++++++ ..++.+..+.+..+++.|.+.+
T Consensus 403 la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili-----~~l~~ia~lis~~fLl~Y~lvn 477 (953)
T TIGR00930 403 LASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILI-----AELNTIAPIISNFFLASYALIN 477 (953)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999977899999999999999999999999988764 3568888888999999999977
Q ss_pred HHHHhhc-cccCCCCC-cccCCchhhHHHHHHHHHHHHHHHh
Q 011741 386 FARMVMA-EQKFNAGP-FYLGKASRPICLIAFLWICYTCSVF 425 (478)
Q Consensus 386 ~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (478)
++.++.| +++...|| ||. ..+.+++++.+.++.+++..
T Consensus 478 la~~~l~~~~~p~~RP~fk~--~~~~~sllG~l~c~~lmf~i 517 (953)
T TIGR00930 478 FSCFHASLLRSPGWRPRFKY--YHWWLSLLGASLCCAIMFLI 517 (953)
T ss_pred HHHHHHhhccCCCCCCcccc--chHHHHHHHHHHHHHHHHHH
Confidence 6665543 33222343 444 56778888888887776554
No 34
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=344.42 Aligned_cols=401 Identities=17% Similarity=0.161 Sum_probs=300.0
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPT-TGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGT 87 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~ 87 (478)
..|.++..+||.+.+++++++++.+++.+++|+|++.++|+ +||.|.|++|. .|+..||.++|.+++.|....+.
T Consensus 53 ~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~----i~e~~aF~~gWny~l~y~i~~a~ 128 (554)
T KOG1286|consen 53 GTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF----VGESLAFAIGWNYLLEYVIGLAA 128 (554)
T ss_pred eccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee----eCcHHHHHHHHHHHHHHHHhhhH
Confidence 35678888898889999999999999999999999999999 59999999999 66667999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC-CCCCccCchhHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHhhhhhhe
Q 011741 88 QAYAGSQTLQSIILLCTGTN-KDGGYFAPKWLFLCMYIGLTIIWAVLNT-FALEVIAFIDIISMWWQVAGGLVIIIMLPL 165 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 165 (478)
++..++.++.++... .... ...+.....|....+++.+++.++.+-. .+.|.....+++++.+.++.+.+++++|..
T Consensus 129 e~~a~s~~~~~w~~~-~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~ 207 (554)
T KOG1286|consen 129 EARAWSSYLDYWTGA-SLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGG 207 (554)
T ss_pred HHHHHHHHHHHHhcc-ccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeecCCC
Confidence 999999999997510 0000 0011222334444444333333333333 566667777777777777777777776665
Q ss_pred ecccccccccccceeeccCCCCCCCCc-hhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHH
Q 011741 166 VALTTQSASYVFTHFEMSPEATGISSK-PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWA 244 (478)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l 244 (478)
..+..+... .+.+ ++++.+.+. +.++..++..++|+|.|+|.++..+||.|||||++|+|+..++..+.++|++
T Consensus 208 ~~d~~~~ig--~~y~---~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~ 282 (554)
T KOG1286|consen 208 PADVKNWIG--FRYW---HDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYIL 282 (554)
T ss_pred cCCcCCCcC--cccc---CCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHH
Confidence 432111111 2223 344456555 3489999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccChhh--hhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCC
Q 011741 245 LILALCFSIQDFSY--LYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRD 322 (478)
Q Consensus 245 ~~~~~~~~~~~~~~--l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 322 (478)
..+.+..++ |+++ +.++. + ..+++....+.. +.+....++++++++++.++.++.+++.+|.+++||||
T Consensus 283 ~~~~l~l~v-py~~~~L~~~~------~-~~spF~iai~~~-~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~ 353 (554)
T KOG1286|consen 283 SSIVLGLLV-PYNDPRLDPGA------A-LASPFVIAIGNA-GAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKD 353 (554)
T ss_pred HHHHheEEe-ccCccccCCCC------c-cccHHHHHHhcc-CccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhc
Confidence 999999999 7766 54333 2 225555444333 33334459999999999999999999999999999999
Q ss_pred CCCcccccccccccCCCChHHHHHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------
Q 011741 323 KGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPIL-KVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK------ 395 (478)
Q Consensus 323 g~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~------ 395 (478)
|++| |+|+|+|+| |+|++|++++...+.+..+... ...+.++++.++.+.+.++.|.....+.+++|+..
T Consensus 354 G~~P--k~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~ 430 (554)
T KOG1286|consen 354 GLAP--KFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRS 430 (554)
T ss_pred CCcc--hHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeecccccCCC
Confidence 9999 999999966 9999999999999999877433 33568999999999999999999888888877653
Q ss_pred CCCCCcccCCchhhHHHHHHHHHHHHHHHhccCCCCC
Q 011741 396 FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYP 432 (478)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 432 (478)
.++.+|+.+ ..+.....+.+...+......+....|
T Consensus 431 ~~~~~~~s~-~~~~gs~~~~~~~~l~~~~~~~~~~~~ 466 (554)
T KOG1286|consen 431 LDELPYKSP-TGPYGSYYGLLVNILILLAQFYVAFFP 466 (554)
T ss_pred cccccccCC-CCCchhHHHHHHHHHHHHHHHhccccc
Confidence 234456665 344444444444444444444433333
No 35
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=4.5e-43 Score=361.84 Aligned_cols=396 Identities=21% Similarity=0.267 Sum_probs=296.7
Q ss_pred chhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHH
Q 011741 8 NSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGT 87 (478)
Q Consensus 8 ~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~ 87 (478)
.+.+.++..+||.+.+++++++++++++.+.+++|+++++|++||.|.|++|.+||+ .|+.+||.+|+.+....+.
T Consensus 17 ~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~----~Gf~~gw~y~~~~~~~~~~ 92 (478)
T PF00324_consen 17 LGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPA----LGFAAGWAYWLSYIAAIAA 92 (478)
T ss_pred HHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCc----CCceeeHHHHHHHHHHHHh
Confidence 345778889999769999999999999999999999999999999999999997776 5999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccCchhHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh-he
Q 011741 88 QAYAGSQTLQSIILLCTGTNKDGGYFAPKWLF-LCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIML-PL 165 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~-~~ 165 (478)
+....+.+++..-.. .+.. +.|.. .+++++.+++.+.+|++|+|.+++.+..+..+|++.++.+++.+ +.
T Consensus 93 ~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~ 164 (478)
T PF00324_consen 93 EATAAGSFLQFWGYF-------PGLP-STWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVGVII 164 (478)
T ss_pred hhhhhhhhhcccccc-------cccc-ccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhcccc
Confidence 888777776654110 1111 01111 15567888899999999999999999999999999999988877 32
Q ss_pred eccccccccc-----c--cceeeccCCC-CCC-CCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHH
Q 011741 166 VALTTQSASY-----V--FTHFEMSPEA-TGI-SSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIG 236 (478)
Q Consensus 166 ~~~~~~~~~~-----~--~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~ 236 (478)
...+.++.+. + +++.- .+. .+. ..+..+++.++..++++|.|+|+++..+||+|||||++||++..+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~ 242 (478)
T PF00324_consen 165 LFFGGGPSNGRYWGDPGSFANNF--PPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVL 242 (478)
T ss_pred cccccCCCccccccccccccccc--ccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhh
Confidence 2111111111 0 01110 000 000 01134799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 011741 237 IISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 316 (478)
Q Consensus 237 ~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 316 (478)
...++|++..++....+ |+++....++..+++| +....... +.++...++.++.+++++++.++.+++.+|++
T Consensus 243 ~~~v~y~~~~~~~~~~~-~~~~~~~~~~~~~~sp-----~~~~~~~~-~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l 315 (478)
T PF00324_consen 243 RIGVFYVLTSYALTLAV-PYDNLGLTAASNSASP-----FVIAAQYS-GGPWLAWIVNAGILISAFSSANASLYAASRLL 315 (478)
T ss_pred hhhhhhhhhhhhccccc-Cccchhhccccccccc-----hhhhhhhc-ccccccceecccchhhhhhhhhhhhcccceee
Confidence 99999999999999888 6666544332211223 33333332 66668889999999999999999999999999
Q ss_pred HHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-
Q 011741 317 YALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPIL-KVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ- 394 (478)
Q Consensus 317 ~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~- 394 (478)
++|||||.+| +++.++|+|+|+|++|++++.+++.+..+... ...+.++.+.+.++...+..|.+......+.||+
T Consensus 316 ~ama~dg~lP--~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~ 393 (478)
T PF00324_consen 316 YAMARDGLLP--KKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKKF 393 (478)
T ss_pred hhhhhhhhhh--hhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhh
Confidence 9999999999 99998899999999999999999998876322 2235778888999999999999876666544433
Q ss_pred cCC-----CCCcccCCchhhHHHHHHHHHHHHHHHhcc
Q 011741 395 KFN-----AGPFYLGKASRPICLIAFLWICYTCSVFLL 427 (478)
Q Consensus 395 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (478)
+.+ +.+++.+ ..+...+.+...+........+
T Consensus 394 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~~ 430 (478)
T PF00324_consen 394 KYRGRSISELPFKSP-FGPMFAILGIAALIIILIFLGF 430 (478)
T ss_pred ccccccccccChhhh-hhHHhHHHHHHHHHHHhhhhhh
Confidence 222 2345554 5555555555444444333333
No 36
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-40 Score=342.78 Aligned_cols=369 Identities=22% Similarity=0.310 Sum_probs=291.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 22 LVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIIL 101 (478)
Q Consensus 22 ~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 101 (478)
..++|++++++..+.+++++|+++++|++||.|.|+++.+||++ +|.++|.+++++....+..+.....++..+++
T Consensus 47 ~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (466)
T COG0531 47 AILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALGPRL----GFLAGWLYLLAYVIALAAIAIGAASYLSYLFP 122 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcCcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55669999999999999999999999999999999999988775 79999999999999999999999998877764
Q ss_pred HhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccceee
Q 011741 102 LCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFE 181 (478)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 181 (478)
... ....+.+....++++++++...+|.+|+|.+++.+.+.+.++++.++.+.+.++...+... .+ .+.++
T Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~-~~~~~- 193 (466)
T COG0531 123 GPG------LLSIGPLLIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN-GN-LFAPF- 193 (466)
T ss_pred cch------hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-cc-cCCCc-
Confidence 210 1222227888999999999999999999999999999999999999999888776543222 11 11122
Q ss_pred ccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhc
Q 011741 182 MSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYD 261 (478)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~ 261 (478)
+. ..+...++..++...+|+|.|+|.+++.+||+|||+|++||+++.+.+++.++|++.+.+..... +.+++..
T Consensus 194 ---~~--~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~-~~~~~~~ 267 (466)
T COG0531 194 ---NP--GGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVL-PAGDLAA 267 (466)
T ss_pred ---cc--ccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHhc
Confidence 11 11223468888999999999999999999999999999999999999999999999999999998 6655554
Q ss_pred CCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccccCCCCh
Q 011741 262 KSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 341 (478)
Q Consensus 262 ~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P 341 (478)
. . + ..| ..+...... | .+...++.+..+++++++.+++..+.+|.+++|+|||.+| ++++|+|+|+++|
T Consensus 268 ~-~-~-~~p-~~~~~~~~~----g-~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP--~~~~~~~~~~~~P 336 (466)
T COG0531 268 S-A-P-SAP-LALAALFGG----G-NWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLP--KFFAKVNPKGRTP 336 (466)
T ss_pred c-C-C-Ccc-HHHHHHHcC----c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHhCCCCCCC
Confidence 3 1 1 144 323332222 2 4478899999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccccCCCCCcccCCch--hhHHHHHHHHH
Q 011741 342 SNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFAR-MVMAEQKFNAGPFYLGKAS--RPICLIAFLWI 418 (478)
Q Consensus 342 ~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 418 (478)
+++++++.+++.++.+........++.+.++++...++.|.+...+. .+|||+++.+|++|.++.. ...+.+.....
T Consensus 337 ~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (466)
T COG0531 337 VIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLL 416 (466)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccchHHHHHHHHHHHH
Confidence 99999999999943332222245789999999999999999965544 4455556677888877432 34444444444
Q ss_pred HH
Q 011741 419 CY 420 (478)
Q Consensus 419 ~~ 420 (478)
+.
T Consensus 417 ~~ 418 (466)
T COG0531 417 LY 418 (466)
T ss_pred HH
Confidence 44
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.94 E-value=9.3e-25 Score=219.14 Aligned_cols=347 Identities=13% Similarity=0.071 Sum_probs=243.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 22 LVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIIL 101 (478)
Q Consensus 22 ~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 101 (478)
.++..+++++.+...+++++|+++++|++||.|.|.++.+||. .+++.+|.+++.+......+....++++..+++
T Consensus 30 ~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~----~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~ 105 (381)
T TIGR00837 30 TLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKT----GNIIAGLSLLFVLYILTYAYISGGGSILSRLIG 105 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 5666788899999999999999999999999999999995554 799999999998877777777777888888775
Q ss_pred HhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccceee
Q 011741 102 LCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFE 181 (478)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 181 (478)
... . ..+......+++.+++..+|.+|.|..+|+|.+.+..++..++++++.++.+. +..+ +.+..
T Consensus 106 ~~~------~---~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~---~~~~--~~~~~ 171 (381)
T TIGR00837 106 EYF------G---FPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHV---KGDL--LLDVA 171 (381)
T ss_pred Hhc------C---CCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cHHH--HhcCc
Confidence 311 1 11223445667777888999999999999999999999988888777665321 1111 11110
Q ss_pred ccCCCCCCCCchhHHHHHHHhhhhhhhccc-hhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhh
Q 011741 182 MSPEATGISSKPYAVILSFLVSQYSLYGYD-SAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLY 260 (478)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~af~G~e-~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~ 260 (478)
.++.++ .++..++...+++| |+| ..+...+|.||++|++||+++.+..++.++|++......+.+ |.+++.
T Consensus 172 --~~~~~~----~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~-~~~~l~ 243 (381)
T TIGR00837 172 --LDTSYW----PYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNL-PRSEFL 243 (381)
T ss_pred --cccccH----HHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 011122 25667777777787 675 588889999878999999999999999999999999999999 888876
Q ss_pred cCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccccCCCC
Q 011741 261 DKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKV 340 (478)
Q Consensus 261 ~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~ 340 (478)
+...+. ++ . +.+.+......+.++...++.+...+++.++.+++..+..+.+. +.+++.|++++
T Consensus 244 ~~~~~~-~~--~-~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~-----------~~~~~~~~~~~- 307 (381)
T TIGR00837 244 PIIAKG-GN--L-DGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLA-----------DLFKFDDSKKG- 307 (381)
T ss_pred HHHHcC-CC--h-HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCCCcccCC-
Confidence 432210 01 1 22333333344666678888999999999999999988885544 33444333333
Q ss_pred hHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcccCCchhhHHHHH
Q 011741 341 PSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIA 414 (478)
Q Consensus 341 P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (478)
|..+.+++.+..+++..... .+.+..+.........+...++....+..|||+ ++++||.| .++....+.
T Consensus 308 ~~~~~~~~~~~pl~~a~~~p--~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~-~~~~~~~~-~~~~~~~~~ 377 (381)
T TIGR00837 308 RFKTGLLTFLPPLVFALFYP--EGFLYAIGYAGLAATIWAVIIPALLAWKARKKF-PNAGYRVW-GGNKLLLLV 377 (381)
T ss_pred CchhhhhhHHhHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcccc-CChHHHHHH
Confidence 67788888888888765432 233455666665555455555555444444432 34589998 666655443
No 38
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.2e-23 Score=208.06 Aligned_cols=416 Identities=14% Similarity=0.108 Sum_probs=267.8
Q ss_pred hhhhhccCcchhHHHHHHHHHHHHHHHHH---HHHHhhhcC-CCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHH
Q 011741 11 EKCLLYAGPASLVWGWVVVSFFTWFVGLA---MAEICSSFP-TTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMG 86 (478)
Q Consensus 11 ~~~~~~~G~~~~~l~~li~~~~~~~~a~~---~~el~~~~p-~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a 86 (478)
.+.+..+|.. .++++..+.++|..++ ++.+++.=- .+||.|..++|.+||++|..+|. ++.++..+..+
T Consensus 138 tWvVG~AGv~---q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGl----cFYLgtT~Aaa 210 (1075)
T KOG2082|consen 138 TWVVGMAGVG---QGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGL----CFYLGTTVAAA 210 (1075)
T ss_pred HHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeee----hhhhhhHHHHH
Confidence 3444444444 5555555555555554 444444432 57999999999999998666554 66666666666
Q ss_pred HHHHHHHHHH-HHHHHHhc--CCCCC-CCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 011741 87 TQAYAGSQTL-QSIILLCT--GTNKD-GGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIM 162 (478)
Q Consensus 87 ~~~~~~~~~~-~~~~~~~~--~~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~ 162 (478)
.+.....+.+ .++++... +.+.. .+.........+.+.+++++..++.+.|+|...++..+.....++.++.+.+.
T Consensus 211 MYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlaiyaG 290 (1075)
T KOG2082|consen 211 MYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAIYAG 290 (1075)
T ss_pred HHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6666666543 33443211 00000 01111122345778899999999999999999999999999999888877665
Q ss_pred hheecccc-------------cccccc---------cce---------------------------ee------------
Q 011741 163 LPLVALTT-------------QSASYV---------FTH---------------------------FE------------ 181 (478)
Q Consensus 163 ~~~~~~~~-------------~~~~~~---------~~~---------------------------~~------------ 181 (478)
++-..... ++..++ .++ ++
T Consensus 291 ~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y~~~nnvt~i~GipG~a~g~ 370 (1075)
T KOG2082|consen 291 GIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEYFSKNNVTEIQGIPGLASGV 370 (1075)
T ss_pred hhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccccccccceeecCCcchhhhh
Confidence 55322110 000000 000 00
Q ss_pred ------cc-------CC----CCCCC-----C----c-hhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHH
Q 011741 182 ------MS-------PE----ATGIS-----S----K-PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSS 234 (478)
Q Consensus 182 ------~~-------~~----~~~~~-----~----~-~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~ 234 (478)
+. .+ ..+.. + + ...|..-+..-+-+.+|+-+.+|.+++.|||||+||.+.+.+
T Consensus 371 ~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~A 450 (1075)
T KOG2082|consen 371 FKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAA 450 (1075)
T ss_pred hhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCCCCccccchhhcCchhhhHH
Confidence 00 00 00000 0 0 011222222223488999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCh----hhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHh
Q 011741 235 IGIISIFGWALILALCFSIQDF----SYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTT 310 (478)
Q Consensus 235 ~~~~~~~y~l~~~~~~~~~~~~----~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (478)
.+....+|+...+.+..++ +. +...++.+ |. + ...... + +-.+++.++.++|.+++.+.++.
T Consensus 451 ilTTS~vYlssv~lFGa~i-~~~vLRDKfG~sv~---g~------l-Vva~la--W-PsPwVi~IGsFlST~GAgLQsLt 516 (1075)
T KOG2082|consen 451 ILTTSFVYLSSVVLFGACI-EGVVLRDKFGQSVG---GN------L-VVATLA--W-PSPWVIVIGSFLSTCGAGLQSLT 516 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhh-cchhhhhhhhhhcc---Cc------E-EEEEec--C-CCceeeehhHHHHHhHHHHhhhc
Confidence 9999999999999988888 52 22222111 11 0 001111 1 24567788999999999999999
Q ss_pred hhhhhHHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 011741 311 SAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAV---PIFA 387 (478)
Q Consensus 311 ~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l---~~~~ 387 (478)
+++|+|++.|||+.+|+-+.|++.. ++|.|.+|++++.+++...++ .++.|....++++ .++++|.. .++.
T Consensus 517 gAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gIL--igslD~iApilsm---FFLMCY~fVNLaCav 590 (1075)
T KOG2082|consen 517 GAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGIL--IGSLDLIAPILSM---FFLMCYLFVNLACAV 590 (1075)
T ss_pred CcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhhe--eechhHHHHHHHH---HHHHHHHHHhHHHHH
Confidence 9999999999999999999999987 779999999999999999988 4455555555554 55555555 3444
Q ss_pred HHhhccccCCCCCcccCCchhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhcccceeeeCC
Q 011741 388 RMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGP 467 (478)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (478)
.-+.|..+++|| ||. .+|.+..++...++.++++..| ....+...++.++| +.-++||.
T Consensus 591 qtLLrtPnWRPR-fky--yHW~LSflG~sLC~~iMF~~SW---------------yyAlvAm~~a~~IY---KYiEykGA 649 (1075)
T KOG2082|consen 591 QTLLRTPNWRPR-FKY--YHWSLSFLGASLCLAIMFISSW---------------YYALVAMLIAGVIY---KYIEYKGA 649 (1075)
T ss_pred HHHhcCCCCCcc-chh--hhhHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH---HHHhhccc
Confidence 444445444443 776 6888999999999988877743 22244444455544 44566777
Q ss_pred ccccCCC
Q 011741 468 VRNIDNE 474 (478)
Q Consensus 468 ~~~~~~~ 474 (478)
++|..+.
T Consensus 650 eKEWGDG 656 (1075)
T KOG2082|consen 650 EKEWGDG 656 (1075)
T ss_pred cchhccc
Confidence 7766543
No 39
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.90 E-value=8.9e-22 Score=195.29 Aligned_cols=386 Identities=14% Similarity=0.079 Sum_probs=276.7
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFP-TTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGT 87 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p-~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~ 87 (478)
+.|+.+.++|-...++.++++-.+.++..++...+++.=- +.||.|.+++|.+||++|.-.|. .+.++.+..++.
T Consensus 89 R~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpEfGGSIGl----lFf~anV~~~am 164 (945)
T KOG1288|consen 89 RFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPEFGGSIGL----LFFVANVFNCAM 164 (945)
T ss_pred HHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcccCCeeee----hhhHHHHhcchh
Confidence 4567777888887777778888888888888888888776 67899999999999998766655 667778877888
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhee
Q 011741 88 QAYAGSQTLQSIILLCT-GTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV 166 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 166 (478)
+...+.+-+...++... +..-+..+....|+.++.+..+..++..+.+.|....+|..+++.+...+.+..+.+-.+..
T Consensus 165 ~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~i~f~~is~s~~si~iS~ifv 244 (945)
T KOG1288|consen 165 NISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASNILFVVISVSLFSIPISFIFV 244 (945)
T ss_pred hhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHHHHHhhhhheeEEe
Confidence 88777776666554311 11111123446788889999999999999999999999999998887777666665544443
Q ss_pred ccccccc------------------ccccceeec---cCCCCCCCCch-hHHHHHHHhhhhhhhccchhhhhhhhhcCcc
Q 011741 167 ALTTQSA------------------SYVFTHFEM---SPEATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGAD 224 (478)
Q Consensus 167 ~~~~~~~------------------~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~ 224 (478)
.+...+. +++++.+.. ++-+.+....+ ..+...+...+-+-+|.-+.++|++|.|+|.
T Consensus 245 gp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PS 324 (945)
T KOG1288|consen 245 GPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKAPS 324 (945)
T ss_pred ccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccccCcc
Confidence 3222110 001111100 00000111111 1344444444557799999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHH
Q 011741 225 KTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFG 304 (478)
Q Consensus 225 k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 304 (478)
|.|||+.+.++....+.|++..+.+.... |...+.++-+ .+.+ . . ....++.++++...+.+
T Consensus 325 kSIP~GTl~ava~Tf~~Yvl~~flm~~t~-~r~~Lq~dy~----------v~~~-i--s----l~p~fi~iGi~sttlfs 386 (945)
T KOG1288|consen 325 KSIPKGTLSAVAFTFFVYVLVIFLMGCTV-PRTLLQNDYD----------VMMH-I--S----LHPPFILIGILSTTLFS 386 (945)
T ss_pred ccCCccchHHHHHHHHHHHHHHHHhccCc-chHHhhhchh----------heee-c--c----ccchHHHHHHHHHHHHH
Confidence 99999999999999999999999988888 7666644331 1211 1 1 13456667777788889
Q ss_pred HHHHHhhhhhhHHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHH
Q 011741 305 GLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVP 384 (478)
Q Consensus 305 ~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~ 384 (478)
.++.+.+++|+|.++|||+++|+-..|+|...+.+-|+.|+.++..+.-++.+. ..++.+.++.++.+++.|...
T Consensus 387 s~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~-----g~~N~iA~~it~~FLlty~~v 461 (945)
T KOG1288|consen 387 SMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLW-----GDINKIASMITMTFLLTYGAV 461 (945)
T ss_pred HHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999977788998888999999999999999988773 467888899999999999987
Q ss_pred HHHHHhhc--cccCCCCCcccCCchhhHHHHHHHHHHHHHH
Q 011741 385 IFARMVMA--EQKFNAGPFYLGKASRPICLIAFLWICYTCS 423 (478)
Q Consensus 385 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (478)
+.+.+..+ ..|+.+..||. +.+--++++.+.++.+++
T Consensus 462 NLacl~LeissAPNFRPtFky--F~w~TclvG~l~s~~mMf 500 (945)
T KOG1288|consen 462 NLACLLLEISSAPNFRPTFKY--FNWHTCLVGVLLSLGMMF 500 (945)
T ss_pred HHHHHHhhhccCCCCCchhhh--hhHHHHHHHHHHHHhhhh
Confidence 65444432 33444455776 556566666666665543
No 40
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.80 E-value=1.5e-16 Score=156.13 Aligned_cols=319 Identities=13% Similarity=0.067 Sum_probs=223.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHH-HHH----HHHHHHHHHHH
Q 011741 21 SLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGL-IAG----MGTQAYAGSQT 95 (478)
Q Consensus 21 ~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~-~~~----~a~~~~~~~~~ 95 (478)
.+.++|+++++...+.+++ +.|++||.|.+.++..||+ .|++.+|..++.. +.. .+..++..+
T Consensus 30 ~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~----f~~lf~~~~~l~iGP~~aiPRtaa~s~e~~-- 97 (378)
T TIGR00796 30 TAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKV----FGILFTVILYLTIGPLFAIPRTATVSFEMG-- 97 (378)
T ss_pred HHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChH----HHHHHHHHHHHHHHhchhhhHHHHHHHHHH--
Confidence 3577899999999888888 8899999999999995655 6888888887543 222 222222222
Q ss_pred HHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccccccccc
Q 011741 96 LQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASY 175 (478)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~ 175 (478)
+..+++ +. .+.......++++..+...+|.++.|...+++++++-++++.++.+++.++....+.. +.
T Consensus 98 i~p~~~---------~~-~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p~g~~--~~ 165 (378)
T TIGR00796 98 IAPLLH---------SP-TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKALLWPAGPI--LA 165 (378)
T ss_pred HHhccC---------cc-cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCc--CC
Confidence 222221 10 1123334566677777777999999999999999999999999999999987532111 10
Q ss_pred ccceeeccCCCCCCCCchhHHHHHHHhhhhhhh-------ccchhhhhhh-hhcCcccccchHHHHHH-HHHHHHHHHHH
Q 011741 176 VFTHFEMSPEATGISSKPYAVILSFLVSQYSLY-------GYDSAAHLTE-ETKGADKTGPIAILSSI-GIISIFGWALI 246 (478)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~-------G~e~~~~~~~-E~k~p~k~ip~ai~~~~-~~~~~~y~l~~ 246 (478)
..+++ .+ ...+..++.-..+.++ |+-.+.+..+ |.|||||+.|+.+..++ ..+.+.|+...
T Consensus 166 ~~~~~----~~------~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~ 235 (378)
T TIGR00796 166 ASGAY----AS------QQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLS 235 (378)
T ss_pred ccccc----cc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111 00 0135666666667778 8888888888 99999999999999998 77777888888
Q ss_pred HHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 247 LALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
++..+.. +.+++.+.++ |. +++.+.....+|+. +..++.+.+.++|+++.++...+.+
T Consensus 236 L~~lGa~-~~~~~~~~~~---~~----~~l~~~a~~~~G~~-G~~ll~i~v~lACLtT~iGli~~~a------------- 293 (378)
T TIGR00796 236 LFYLGAT-SAAAAGDAVN---GA----QILSAYSQHLFGSL-GSFLLGLIITLACLTTAVGLTTACS------------- 293 (378)
T ss_pred HHHHhcC-cHhhhcccCC---cH----HHHHHHHHHHcchh-HHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 8888877 5555543211 21 44445455555654 7889999999999999999988843
Q ss_pred ccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccccCCCCCccc
Q 011741 327 FSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARM---VMAEQKFNAGPFYL 403 (478)
Q Consensus 327 ~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~ 403 (478)
+.|+|+++| +|+++.++...+...++.. ..++.+.+++.-...+.|-+.....+ .||+.++.+|+||.
T Consensus 294 --~~f~~~~~k--~~y~~~v~~~~l~s~~ia~-----~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~ 364 (378)
T TIGR00796 294 --EYFHKLVPK--LSYKTWVIVFTLFSFIVAN-----LGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQI 364 (378)
T ss_pred --HHHHHhcCC--CCHHHHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeh
Confidence 667777654 9999999888877776552 46788888888888888877443322 44455566788887
Q ss_pred C
Q 011741 404 G 404 (478)
Q Consensus 404 ~ 404 (478)
+
T Consensus 365 ~ 365 (378)
T TIGR00796 365 T 365 (378)
T ss_pred H
Confidence 5
No 41
>PHA02764 hypothetical protein; Provisional
Probab=99.78 E-value=3.8e-17 Score=149.49 Aligned_cols=242 Identities=17% Similarity=0.132 Sum_probs=159.7
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 16 YAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQT 95 (478)
Q Consensus 16 ~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~ 95 (478)
..|+. .+++|+++++++++.+++|+|+++++|++||+|.|.+|++||. .|++.||..|..+....+..+-.-.
T Consensus 43 ~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFGP~----~GFLvG~a~WLtl~~G~Pal~~l~~-- 115 (399)
T PHA02764 43 LKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFSSK----FYTIFGISLWLTYVLSQPILGDLVL-- 115 (399)
T ss_pred CCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhCcc----HHHHHHHHHHHHHHhhcchhhheee--
Confidence 35666 7899999999999999999999999999999999999996654 6999999999987766554432211
Q ss_pred HHHHHHHhcCCCCCCCccCchh-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccccccc
Q 011741 96 LQSIILLCTGTNKDGGYFAPKW-LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSAS 174 (478)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~ 174 (478)
-++...+. ....+- .-...+..+-..|.|.++|...++.....+ ++.+.. ..+-+
T Consensus 116 --------------~~~~i~~~~~~f~~~-~s~~~i~~~i~~~~~~~~~~v~il~~a~~i------~aif~~---~~s~n 171 (399)
T PHA02764 116 --------------LNFNIQNQFEQFLIV-ESLFPIVLLIIANKKIYAKIVDILAIAQII------IAIFIA---FKSFN 171 (399)
T ss_pred --------------eeeeeHHHHHHHHHH-HHHHHHHHHHHcccHHHHHHHHHHHHHHHH------HHHHhh---cccee
Confidence 01111111 111111 112233344455688888887775444443 222211 12222
Q ss_pred cccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011741 175 YVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ 254 (478)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~ 254 (478)
...+++ ..+ ...+.++....-+|.=.|+....++|.||-+|....+-..+.+.+.++-+..+
T Consensus 172 ~~~~~f-------~~s---nt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~s-------- 233 (399)
T PHA02764 172 FQYQNF-------TIS---NTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILSIIDS-------- 233 (399)
T ss_pred EEEcce-------eeh---HHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHh--------
Confidence 223333 111 13556666666677778999999999999999988888777766555433222
Q ss_pred ChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCccccccccc
Q 011741 255 DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQL 334 (478)
Q Consensus 255 ~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~ 334 (478)
++.+ .+..+.+..+.++-+....--.||++++|+.|+.+| |+|+|.
T Consensus 234 -y~n~-------------------------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lp--e~f~k~ 279 (399)
T PHA02764 234 -YSNL-------------------------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLP--EKFSKI 279 (399)
T ss_pred -hhhH-------------------------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhhhch--HHHhcc
Confidence 1100 111222555667777777778999999999999999 999999
Q ss_pred ccCCCChH
Q 011741 335 HPKHKVPS 342 (478)
Q Consensus 335 ~~~~~~P~ 342 (478)
| + ++|.
T Consensus 280 ~-~-nv~~ 285 (399)
T PHA02764 280 N-P-NVLL 285 (399)
T ss_pred C-C-Ccee
Confidence 8 4 6888
No 42
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.76 E-value=1.5e-15 Score=151.24 Aligned_cols=267 Identities=12% Similarity=-0.004 Sum_probs=184.0
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
++...+.+|+. .+++++++++.+++.++++.|+++++|+. +.+.|.++.+| ++.|++.+|.++.......+...
T Consensus 25 P~~~~~~a~~~-~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~G----k~~g~~~~~~~~~~~~~~~~~~~ 98 (359)
T TIGR00912 25 PALVSQSAGQD-GWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLG----KILGRLLSILFILYFFLIAAYLI 98 (359)
T ss_pred hHHHHhccCCC-eeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567887 89999999999999999999999999987 69999999955 45799999988877776666666
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHhhhhhheecc
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGG-LVIIIMLPLVAL 168 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~-~~~~i~~~~~~~ 168 (478)
...+++++.... + .+ +...+.+.++++....+..|+|..+|.+.+...+++... +++..... +
T Consensus 99 ~~~~~~~~~~~l---------~--~t--p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~---~ 162 (359)
T TIGR00912 99 RIFADFIKTYLL---------P--RT--PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAP---K 162 (359)
T ss_pred HHHHHHHHHHhc---------C--CC--CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c
Confidence 666666654321 1 11 234556677778888999999999999999998887663 33222211 1
Q ss_pred cccccccccceeeccCCCCCCCCchhHHHHHHH-hhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHH
Q 011741 169 TTQSASYVFTHFEMSPEATGISSKPYAVILSFL-VSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALIL 247 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~ 247 (478)
..+.. .+.+. -++++. ....+.. ...++|.|+|......+|.||| |+.||++..+.+++.++|.+...
T Consensus 163 ~~~~~--~l~P~----~~~g~~----~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~ 231 (359)
T TIGR00912 163 LGNIK--NLLPV----LENGLS----PILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVLLYILTTF 231 (359)
T ss_pred cccHH--HccCc----cccCcH----HHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111 12233 122343 3555555 7788999999999999999996 56899999999999999999999
Q ss_pred HHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 011741 248 ALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVY 317 (478)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 317 (478)
...... ++++..+.. .| ..+.....-...|=.+ ...++...-..+.+......++..++.+.
T Consensus 232 ~~i~~l-g~~~~~~~~-----~P-~~~~~~~i~~~~f~eR-~e~~~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 232 VSISVF-GGNVTKNLY-----WP-TLELIKLINIGDFIER-FELIVMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHhee-cHHHhhhhc-----cc-HHHHHHHhhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888 777776544 34 2222222110000001 23344444555566666677777777665
No 43
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.75 E-value=9e-15 Score=145.93 Aligned_cols=350 Identities=14% Similarity=0.057 Sum_probs=240.0
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
++...+.+|-....+..+++..++...++.++|.+.+.++..+.-..++|.+||+ .+++.+..+.+........+.
T Consensus 24 LP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~----g~~~~~~~~~~~~y~ll~AYi 99 (394)
T PF03222_consen 24 LPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK----GGIVIGISYLFLLYALLVAYI 99 (394)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3445556676666777788888999999999999999999999999999997776 477777788877666667788
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccc
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~ 169 (478)
...++.+.+.++... +...+ .....+.+.++...+-..|.|...|.++.+...+++.++.+.+.++.+
T Consensus 100 sg~g~~~~~~l~~~~------~~~~~---~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~--- 167 (394)
T PF03222_consen 100 SGGGSILSSLLGNQL------GTDLS---PWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIILVVYLIPH--- 167 (394)
T ss_pred HccHHHHHHHHHHhc------CCCCc---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence 888888888887632 12222 234445566667777789999999999999999999888887777643
Q ss_pred ccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHH
Q 011741 170 TQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILAL 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~ 249 (478)
.+.++....+ .+..+| ...+.++...+++|.-...++.+.+..++-+|+++|+++.+..+..++|++...+.
T Consensus 168 ~~~~~L~~~~----~~~~~~----~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~ 239 (394)
T PF03222_consen 168 WNPSNLLDAP----PSPSDW----SYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSI 239 (394)
T ss_pred cCHHHhhccc----cccccH----HHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221100 011223 35778899999999999999999999997788999999999999999999999999
Q ss_pred HhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccc
Q 011741 250 CFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSS 329 (478)
Q Consensus 250 ~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~ 329 (478)
.+.+ |.+++.+..++. ++ . +.+.....+..++++......+..+++..++..+...+..+.+.+.=+.
T Consensus 240 lg~l-~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~------- 307 (394)
T PF03222_consen 240 LGSL-PREQFAEAIAQG-GN--V-SALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL------- 307 (394)
T ss_pred HhcC-CHHHHHHHHhcC-CC--h-HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------
Confidence 9988 766654322210 11 1 2233444444467777888888888888888888888877776543211
Q ss_pred cccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccccCCCCCcccC
Q 011741 330 IWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYA-VPIFARMVMAEQKFNAGPFYLG 404 (478)
Q Consensus 330 ~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 404 (478)
.+ +++++ .....++....+++...++ +.|....+.+.....+.+. ++.....+. |+++++++||.+
T Consensus 308 --~~-~~~~r--~~~~~ltf~ppl~~a~~~p---~~F~~al~~aG~~~~il~~ilP~~m~~~~-r~~~~~~~~~~~ 374 (394)
T PF03222_consen 308 --KN-NSSGR--LKTWLLTFLPPLIFALLFP---NGFLIALGYAGIGIAILLGILPALMVWKA-RKRKPKQPYRVP 374 (394)
T ss_pred --Cc-cccch--HHHHHHHHHhHHHHHHHCc---HHHHHHHHhhcHHHHHHHHHHHHHHHHHH-HcccCCCCeEEe
Confidence 11 11222 3344555666666655433 4566666666544444443 455444444 334445558876
No 44
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.71 E-value=6.7e-16 Score=152.83 Aligned_cols=387 Identities=15% Similarity=0.072 Sum_probs=264.1
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFP-TTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGT 87 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p-~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~ 87 (478)
++++...+||..-.++...+...+.+..+++-.-++++=. ++||.|..++|.+|+++|--.|. .|.++.....+.
T Consensus 52 rl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg~efggsigi----Iy~f~~aVa~am 127 (643)
T KOG2083|consen 52 RLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLGPEFGGSIGI----IYAFANAVATAM 127 (643)
T ss_pred hhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecccccccchhHH----HHHHHHHHHHHH
Confidence 4667778888886677677788889999999999988876 78999999999999998665555 566666666778
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec
Q 011741 88 QAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~ 167 (478)
+...+++.+..++... +.+...-++.+..++...+|.-|.|+..|.|.++..+.++.+.-+.+..+...
T Consensus 128 ~~vgfaEsv~~l~~~~-----------s~~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il~iai~~f~~gs~~~~ 196 (643)
T KOG2083|consen 128 YVVGFAESVAHLFETE-----------SKEMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLILLIAIADFLVGSFFSP 196 (643)
T ss_pred hhhhHHHHHHHHHHhc-----------cHHHhcchhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhhhccCh
Confidence 8888888888777531 33344448888899999999999999999999999998888888777766543
Q ss_pred cccc--ccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHH
Q 011741 168 LTTQ--SASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWAL 245 (478)
Q Consensus 168 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~ 245 (478)
.+.+ -.++.-+.+..+.++ ++.+ ...++.-+..-+-+.+|.-+..+++++.|+|++++|++-+.+......+|+..
T Consensus 197 ~~~~~g~~~~~a~~~~~n~~~-~~~~-~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 197 NEFSSGFFGYRADIFVENLNP-DIDP-GYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred hhhcccccccchhhcccCCCC-CcCC-CCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhh
Confidence 2111 111111111000011 1221 23444444444558899999999999999999999999999999999999886
Q ss_pred HHHHHhhccChhhhhcCCCccCC---CccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCC
Q 011741 246 ILALCFSIQDFSYLYDKSNETAG---AFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRD 322 (478)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~g---~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 322 (478)
..-..... ..+.+....+..+. .- . ....+....... .......+...+...+..+.+.++.++++++.+|
T Consensus 275 i~~~Ga~~-~r~~~~~~~~~~~~~c~~g-l-~~~~qv~smvS~---~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd 348 (643)
T KOG2083|consen 275 IADLGATP-VRDALENWNDTSTKSCPIG-L-TNYLQVMSMVST---FGPLITAGILAAELSSALSSLVSAPKVLQALCKD 348 (643)
T ss_pred hhhcccHH-HHHHhccchhhccCCCccc-h-HHHHHHHHhHhh---cccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 66555443 22222111110000 00 1 112222221111 3445566777778888999999999999999999
Q ss_pred CCCcccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCCCCC-
Q 011741 323 KGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAE-QKFNAGP- 400 (478)
Q Consensus 323 g~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~- 400 (478)
+..|...++.|-.++.+.|.++..++...+..++.. ++ .+.+.-..+......|.+.....+.-+- +++.+||
T Consensus 349 ~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~i--ge---ln~iapiis~FfL~syAlinf~~f~aSl~~s~~wRp~ 423 (643)
T KOG2083|consen 349 SLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAI--GE---LNIIAPIISNFFLLSYALINFSCFHASLAISEGWRPS 423 (643)
T ss_pred CCCccHHHHHccCCccccchHHHHHHHHhHheeEEe--cc---cceeccchhhhhhhhhhccchhhhhhhhccccccCch
Confidence 999977778898999999999999999999988764 22 2444555566777888887665555432 2333333
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHh
Q 011741 401 FYLGKASRPICLIAFLWICYTCSVF 425 (478)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (478)
++. .-+.+..++.+.++..++..
T Consensus 424 f~~--yn~wVSllGalKOG~ImFli 446 (643)
T KOG2083|consen 424 FKF--YNAWVSLLGALLCLAIMFLI 446 (643)
T ss_pred hhh--HHHHHHHHHHHHHHHHHHHH
Confidence 333 23455566665555554444
No 45
>PRK10483 tryptophan permease; Provisional
Probab=99.68 E-value=2.9e-13 Score=133.93 Aligned_cols=354 Identities=13% Similarity=-0.008 Sum_probs=227.0
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
++.+.+..|-.......++..+.|...++.+.|.+.++|+.-+.-..+++.+||.+ ..+++..+.+-.......+.
T Consensus 32 LP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g----~~i~~~s~lfl~Y~Ll~AYi 107 (414)
T PRK10483 32 LPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGW----NVVNGISIAFVLYILTYAYI 107 (414)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556667788889999999999999999999999999999988863 34444444444333344445
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccc
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~ 169 (478)
...++.+...++. .+...+ ...-++.+..+...+-..|.|...|.++++...+++..+..+...+.+
T Consensus 108 sg~g~il~~~l~~-------~~~~i~---~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~--- 174 (414)
T PRK10483 108 SASGSILHHTFAE-------MSLNVP---ARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGH--- 174 (414)
T ss_pred hCcHHHHHHHHHh-------cCCCCc---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 5566777776643 122223 235566777888888899999999999999999998888766654432
Q ss_pred ccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHH
Q 011741 170 TQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILAL 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~ 249 (478)
.+..+....+. .+...+ ...+.++...+++|.=...++.+.++.++-.|++.|+++.+.++..++|++...+.
T Consensus 175 i~~~~L~~~~~---~~~~~~----~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~ 247 (414)
T PRK10483 175 VQPATLFNVAE---SNASYA----PYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLAT 247 (414)
T ss_pred cCHHHHhcccc---ccchhH----HHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211110011 011112 14667888888888878889999988876556999999999999999999999999
Q ss_pred HhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccc
Q 011741 250 CFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSS 329 (478)
Q Consensus 250 ~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~ 329 (478)
.+.+ |++++.+...+ ++. + +.+.+..++..+++....+..+...++..++..+...+....+.++-|.+ +
T Consensus 248 lg~l-~~~~~~~~~~~--~~n-i-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~-----~ 317 (414)
T PRK10483 248 MGNI-PRPEFIGIAEK--GGN-I-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD-----D 317 (414)
T ss_pred hcCC-CHHHHHHHHHc--CCC-h-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----C
Confidence 9999 77765433111 111 2 33434455555666677777777777777777777777777666544322 1
Q ss_pred cccccccCCCChHHHHHHHHHHHHHHHccccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcccCCchh
Q 011741 330 IWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVF-TAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASR 408 (478)
Q Consensus 330 ~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (478)
. + + -.....+++++-.+++.+.++ +.| ..+--.........-.++....+..|||. ++++||.+ .+.
T Consensus 318 ~----~-~--~r~~~~~ltflPPl~~al~~P---~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~-~~~~y~v~-Gg~ 385 (414)
T PRK10483 318 S----A-M--GRFKTALLTFLPPVVGGLLFP---NGFLYAIGYAGLAATIWAAIVPALLARASRKRF-GSPKFRVW-GGK 385 (414)
T ss_pred c----c-c--cceeeehhhHhhHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCceec-CCH
Confidence 0 0 1 122234567777777766543 344 33333344433333344665555554432 24678887 444
Q ss_pred h
Q 011741 409 P 409 (478)
Q Consensus 409 ~ 409 (478)
.
T Consensus 386 ~ 386 (414)
T PRK10483 386 P 386 (414)
T ss_pred H
Confidence 3
No 46
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.67 E-value=3.6e-13 Score=133.89 Aligned_cols=353 Identities=10% Similarity=-0.016 Sum_probs=234.0
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
++.+.+.+|........+++..++...++.+.|.+.+.|+.-+....+++.+||+ .+++....|.+........+.
T Consensus 24 LPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~----g~~i~~~~y~fl~y~ll~AYi 99 (403)
T PRK15132 24 MPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRY----GQWLTGFSMMFLMYALTAAYI 99 (403)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666655666667777788999999999999888889999999998877 478888888877666666677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccc
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~ 169 (478)
...++.+.+.++.. .+.+.+.+ ...+.+.++...+-..|.|...|.+.++...+++.++........ +
T Consensus 100 sg~g~il~~~l~~~------~~~~i~~~---~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p---~ 167 (403)
T PRK15132 100 SGAGELLASSISDW------TGISMSPT---AGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVMLALMMP---H 167 (403)
T ss_pred hCcHHHHHHHHHHh------ccCCCChH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 77667777766431 11222222 344455556666888899999999999999999887765554442 2
Q ss_pred ccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHH
Q 011741 170 TQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILAL 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~ 249 (478)
.+.++.. +. +++. .....++...+++|.=...++.+....++-+|+++|++..+.++..++|++...+.
T Consensus 168 ~~~~~L~--~~-------~~~~--~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~ 236 (403)
T PRK15132 168 IHKVNLL--TL-------PLQQ--GLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLAT 236 (403)
T ss_pred cCHHHHh--cC-------Cccc--cHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 11 1111 13677888888999888889999999888789999999999999999999999999
Q ss_pred HhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccc
Q 011741 250 CFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSS 329 (478)
Q Consensus 250 ~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~ 329 (478)
.+.+ |.+++.+..++ +.. ..+.. +.+.+..+.++...+..+...++..++..+...+....+.++-|.+ . +
T Consensus 237 lg~l-~~~~~~~~~~~--~~~-~~~~l-~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~--~ 307 (403)
T PRK15132 237 LGSI-DSTTFMGLLAN--HAG-LNGLL-QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--N--T 307 (403)
T ss_pred HhCC-CHHHHHHHHHc--cCc-hHHHH-HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--c--c
Confidence 9999 77765432221 111 22333 3344444666677787888888888888888888888777755432 1 1
Q ss_pred cccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccCCCCCcccCCchh
Q 011741 330 IWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTI-GWVGGYAVPIFARMVMAEQKFNAGPFYLGKASR 408 (478)
Q Consensus 330 ~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (478)
++. -.....++.+..+++...++ +.|....+.+.. ...+.++++.....+.|++++ +++||.| .+.
T Consensus 308 ------~~~--r~~~~~l~flppli~a~~~P---~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~~-~~~y~v~-gg~ 374 (403)
T PRK15132 308 ------VGG--RLQTGLITFLPPLAFALFYP---RGFVMALGYAGVALAVLALLLPSLLVWQSRKQNP-QAGYRVK-GGR 374 (403)
T ss_pred ------ccC--CchhehhhHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCccCC-CCh
Confidence 011 12234566666666655433 566655555544 333455556655555544432 4678887 555
Q ss_pred hHH
Q 011741 409 PIC 411 (478)
Q Consensus 409 ~~~ 411 (478)
...
T Consensus 375 ~~~ 377 (403)
T PRK15132 375 PAL 377 (403)
T ss_pred HHH
Confidence 433
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.63 E-value=1.9e-12 Score=128.04 Aligned_cols=359 Identities=12% Similarity=-0.047 Sum_probs=222.8
Q ss_pred hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 10 EEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 10 ~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
++.+.+.+|-.......++..+.|...++.+.|.+.++|+.-+.-..+++.+||+ | ..++...+.+-.......+.
T Consensus 30 LP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~-g---~~i~~~~~~fl~Y~Ll~AYi 105 (415)
T PRK09664 30 LPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNT-W---NIISGITVAFVLYILTYAYI 105 (415)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChH-H---HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666778888999999999999999999999999999998886 2 33444444443333334445
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccc
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~ 169 (478)
...++.+.+.++.. .+...++ ...++.+.++...+-..|.|...|.++++...+++..+..+..+..+
T Consensus 106 sggG~il~~~l~~~------~~~~i~~---~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~--- 173 (415)
T PRK09664 106 SANGAIISETISMN------LGYHANP---RIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFGSFFFQ--- 173 (415)
T ss_pred hccHHHHHHHHhhh------ccCCCcH---HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhc---
Confidence 55566777766431 1222232 23457788888899999999999999999999998877766655432
Q ss_pred ccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHH
Q 011741 170 TQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILAL 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~ 249 (478)
.+.......+. ..+.+......+.++...+.+|.=...++.+....++-.|+++|+++.+..+..++|++...++
T Consensus 174 i~~~~L~~~~~-----~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~i 248 (415)
T PRK09664 174 VDYSILRDATS-----TTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCT 248 (415)
T ss_pred ccHHHHhcCcc-----ccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211111 0000000114666778788888777888888888887678899999999999999999999999
Q ss_pred HhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccc
Q 011741 250 CFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSS 329 (478)
Q Consensus 250 ~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~ 329 (478)
.+.+ |++++.+...+ |.. +.+......+. ...++...+..+...++..++-.+...+....+.++-|.+ . +
T Consensus 249 lG~l-p~~~~~~~~~~--g~n-v~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~--~ 319 (415)
T PRK09664 249 MGNI-PRESFKAIISS--GGN-VDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID--N--S 319 (415)
T ss_pred hcCC-CHHHHHHHHHc--CCC-chHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--C--c
Confidence 9988 76665322211 112 33444444433 3455566666666666666666666666666555543222 1 1
Q ss_pred cccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcccCCchhh
Q 011741 330 IWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRP 409 (478)
Q Consensus 330 ~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (478)
++-......++++..+++.+.++ +.....+-..........-+++....+.-||| +.+++||.+ .+..
T Consensus 320 --------~~~r~~~~~ltflPPl~~al~~P--~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~-~~~~~y~v~-GG~~ 387 (415)
T PRK09664 320 --------HGGRFKTVLLTFLPPALLYLIFP--NGFIYGIGGAGLCATIWAVIIPAVLAIKARKK-FPNQMFTVW-GGNL 387 (415)
T ss_pred --------cccceeeehhhHhhhHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCceee-CCHH
Confidence 11122235567777777777543 22334444434443333444466555555443 234678888 4444
Q ss_pred H
Q 011741 410 I 410 (478)
Q Consensus 410 ~ 410 (478)
.
T Consensus 388 ~ 388 (415)
T PRK09664 388 I 388 (415)
T ss_pred H
Confidence 3
No 48
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.63 E-value=7.3e-13 Score=132.02 Aligned_cols=272 Identities=12% Similarity=0.029 Sum_probs=189.5
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHH----HhhhcCC-CCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 011741 17 AGPASLVWGWVVVSFFTWFVGLAMAE----ICSSFPT-TGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYA 91 (478)
Q Consensus 17 ~G~~~~~l~~li~~~~~~~~a~~~~e----l~~~~p~-~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~ 91 (478)
+|.. .+++++++.+++++..+.+.. .....|+ +.+.+.++++.+||. .|.+.++.|++........++..
T Consensus 28 ag~~-G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~----~G~ii~~lY~~~~~~i~~aY~~~ 102 (397)
T TIGR00814 28 AGLG-GLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKN----WGILITLLYFFAIYPILLIYSVA 102 (397)
T ss_pred HHhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555 577778888877777666555 4333454 789999999996665 68888999999888887777877
Q ss_pred HHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccccc
Q 011741 92 GSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQ 171 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~ 171 (478)
.++.+.+++.... ..+.+ ...+.++.++++...++..|.|...|++.++...+++.++.+.+....+ .+
T Consensus 103 ~~~~~~~fl~~~~------~~~~p--~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~---~~ 171 (397)
T TIGR00814 103 ITNDSASFLVNQL------GTAPP--LRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPH---WN 171 (397)
T ss_pred HHHHHHHHHHHhc------CCCCc--HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC
Confidence 7777777765421 12222 2345677778888899999999999999999999988777776665522 22
Q ss_pred ccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhh----hhhcCc---ccccchHHHHHHHHHHHHHHH
Q 011741 172 SASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLT----EETKGA---DKTGPIAILSSIGIISIFGWA 244 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~----~E~k~p---~k~ip~ai~~~~~~~~~~y~l 244 (478)
.++.. .. ....+ ....+..++...+|+|.|+|..+.++ +|.||| +|+..|++..+..+..++|+.
T Consensus 172 ~~~L~--~~---p~~~~---~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~ 243 (397)
T TIGR00814 172 GANLT--TF---PSFNG---FLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMF 243 (397)
T ss_pred HHHHh--cC---Ccccc---hHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 11 01111 12368889999999999999999998 666655 577889999999999999999
Q ss_pred HHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhc
Q 011741 245 LILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 320 (478)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 320 (478)
..++..... +++++.+...+ + + +.+ ..+.+.++.+....+..+...++...+..+...+....+..+-
T Consensus 244 ~~~s~~~~l-~~~~~~~a~~~---n--i-s~L-s~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~ 311 (397)
T TIGR00814 244 FVFSCVLSL-SPAEAVAAKEQ---N--I-SIL-SYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIV 311 (397)
T ss_pred HHHHHhccC-CHHHHHHHHHc---C--c-HHH-HHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999 77776544321 1 1 223 3333444566666666666666666666666666666665555
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.47 E-value=5.8e-10 Score=112.29 Aligned_cols=234 Identities=12% Similarity=-0.030 Sum_probs=182.6
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-chhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTG-SLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGT 87 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~ 87 (478)
.++.+...+|-...++..++....+....+.+.|...+.|+.. +.++-+++.+||++ +++....+.+........
T Consensus 29 ~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~----~~li~~s~~~~~~~~~~a 104 (415)
T COG0814 29 FLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKG----GILIGLSYFFALYGLLVA 104 (415)
T ss_pred hhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcch----HHHHHHHHHHHHHHHHHH
Confidence 4566777778777777788899999999999999999999984 99999999988885 888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec
Q 011741 88 QAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~ 167 (478)
+....++.+...++... .. ++....+..+++..+...+...|.+...|.+..+...+++.++++......+.
T Consensus 105 Y~~~~g~~l~~~~~~~~------~~--~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~ 176 (415)
T COG0814 105 YIVGIGNLLASFLGNQF------GL--NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHW 176 (415)
T ss_pred HHhcchhHHHHHHHhhc------cc--CCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888888888876421 11 11445566667777788899999999999999999999988888777665432
Q ss_pred ccccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccc-cchHHHHHHHHHHHHHHHHH
Q 011741 168 LTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKT-GPIAILSSIGIISIFGWALI 246 (478)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~-ip~ai~~~~~~~~~~y~l~~ 246 (478)
+.... ... +..+ +.+...++.++...+++|.+.-..+.+..|+|++.|+ ++|++..+..+..++|+...
T Consensus 177 ---~~~~l--~~~----~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~ 246 (415)
T COG0814 177 ---NPANL--FAL----PSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVG 246 (415)
T ss_pred ---CHHHH--hcc----cccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 111 0000 1222368889999999999999999999999988887 99999999999999999999
Q ss_pred HHHHhhccC--hhhhhcCCC
Q 011741 247 LALCFSIQD--FSYLYDKSN 264 (478)
Q Consensus 247 ~~~~~~~~~--~~~l~~~~~ 264 (478)
.....++++ .+++.++..
T Consensus 247 ~~~~~~~~~~~~~~il~~~~ 266 (415)
T COG0814 247 FFVFGCFGSLVFGNILAAKE 266 (415)
T ss_pred HHHHHhcCcccHHHHHHccC
Confidence 999999953 245555543
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.45 E-value=5.4e-10 Score=110.86 Aligned_cols=352 Identities=10% Similarity=-0.001 Sum_probs=217.5
Q ss_pred hhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 011741 11 EKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSF-PTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQA 89 (478)
Q Consensus 11 ~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~-p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~ 89 (478)
+.....+|.....+..+++..++...+..+.|..... |+..+.-..+++.+||++ +.+.+..|.+........+.
T Consensus 41 PI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g----~~i~~ilYff~ly~ll~aY~ 116 (443)
T PRK13629 41 PIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTG----GVVITFLYFFAICPLLWIYG 116 (443)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhH----HHHHHHHHHHHHHHHHHHHH
Confidence 3444555666566667777888888889999999999 556678899999988875 77777788877666666666
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccc
Q 011741 90 YAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~ 169 (478)
....+.+.+++..+. +. +.....+.++.+..+...+-..|.|...|++.++...+++.++.+.+..+.+
T Consensus 117 ~~itn~l~sfl~~ql------~~--~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~--- 185 (443)
T PRK13629 117 VTITNTFMTFWENQL------GF--APLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPY--- 185 (443)
T ss_pred HHHHHHHHHHHHhhc------Cc--CCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 666777766544311 11 1113457788899999999999999999999999999999888887777643
Q ss_pred ccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhh----h------cCcccccchHHHHHHHHHH
Q 011741 170 TQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEE----T------KGADKTGPIAILSSIGIIS 239 (478)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E----~------k~p~k~ip~ai~~~~~~~~ 239 (478)
.+.++....+.+...+..+. ......+.++...+++|.=.-.++.++.. . ++.+|+..|++..+.++..
T Consensus 186 w~~~~L~~~~~~~~~~~~~~-~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~l 264 (443)
T PRK13629 186 WNSAVIDQVDLGSLSLTGHD-GILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMV 264 (443)
T ss_pred cCHHHHhcCccccccccccc-cHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Confidence 33332211111000000000 00124677788888887666666655554 3 2235888999999999999
Q ss_pred HHHHHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCC-----chhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011741 240 IFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHN-----STGAIILLIVIWGSFFFGGLSVTTSAAR 314 (478)
Q Consensus 240 ~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~sR 314 (478)
++|+...+.+.+.. +++++.+..++ +.+ +.+.+.+.++...+. +....+..+...++...+-.+...+..-
T Consensus 265 v~y~fwv~S~~gsL-s~~~l~~a~~q--n~s-~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E 340 (443)
T PRK13629 265 AVVMFFAFSCLFTL-SPQNMAEAKAQ--NIP-VLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLE 340 (443)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHh--CCc-HHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 78777544431 112 224444444432222 4456666666666666666666666666
Q ss_pred hHHHhcCC-CCCcccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 011741 315 VVYALSRD-KGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSI-CTIGWVGGYAVPIFARM 389 (478)
Q Consensus 315 ~l~~~a~d-g~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~-~~~~~~~~~~l~~~~~~ 389 (478)
.+..+.++ ..-+. +. |.| ++..-....++..+.+.+.....+ +.++-+-++ +-+...+.|+++..+..
T Consensus 341 ~l~gl~~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~w~~~~~np---~il~~i~~~~gPiia~il~l~P~y~i~ 410 (443)
T PRK13629 341 GLNGLILKFGYKGD-KT--KVS-LGKLNTISMIFIMGSTWVVAYANP---NILDLIEAMGAPIIASLLCLLPMYAIR 410 (443)
T ss_pred HHHHHHHHHHhhcc-cc--ccC-HHHHHHHHHHHHHHHHHHHHHhCc---cHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 66655532 11110 11 233 223333344444444444433322 455555444 34455566777664443
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.93 E-value=1.2e-06 Score=85.84 Aligned_cols=262 Identities=13% Similarity=0.035 Sum_probs=176.5
Q ss_pred hhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 14 LLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGS 93 (478)
Q Consensus 14 ~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~ 93 (478)
.+.+| . .+++.+++++..++..+.+..+.+++|+. ....+.++.+||. .|.+.+..+.+.+....+...-..+
T Consensus 28 ~~~~~-d-~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~----lg~ii~~~~~l~~l~~~~~~lr~~~ 100 (320)
T PF03845_consen 28 AEQAG-D-AWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKW----LGKIINLLYILYFLLISALVLREFS 100 (320)
T ss_pred HHHcC-C-cHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454 4 78999999999999999999999999975 7789999995554 6776666777766666666666666
Q ss_pred HHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccccccc
Q 011741 94 QTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSA 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~ 173 (478)
+.++...- +..+...+...++.........|.+..+|.+.....+.++..+.+..... ++.+..
T Consensus 101 ~~i~~~~l-------------p~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~---~~~~~~ 164 (320)
T PF03845_consen 101 EFIKTYLL-------------PETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLLSI---PNIDWD 164 (320)
T ss_pred HHHHHHhc-------------CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCHH
Confidence 66665432 12233455567778888889999999999887777777665555443332 111111
Q ss_pred ccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011741 174 SYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 253 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~ 253 (478)
...+. .+.|+. .++.+.....+.|.|.|.........|||+ +..|....+.....++|...........
T Consensus 165 --~l~P~----~~~g~~----~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~i~vf 233 (320)
T PF03845_consen 165 --NLLPV----LESGIK----PILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGLFLLFIIFITIGVF 233 (320)
T ss_pred --HeeCc----ccCChH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12232 222332 577788888889999999999999999975 5689999999999999999888888888
Q ss_pred cChhhhhcCCCccCCCccHHHHHHHH-hccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 011741 254 QDFSYLYDKSNETAGAFVPAQILYDA-FHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 318 (478)
Q Consensus 254 ~~~~~l~~~~~~~~g~p~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 318 (478)
++++..+.. .| .-+..... .++.+ .+ ...++...-..+.+......++..++.+..
T Consensus 234 -G~~~~~~~~-----~P-~~~~~~~i~i~~fi-eR-ld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 234 -GPELAKKLT-----YP-VLELARSIEIGDFI-ER-LDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred -CHHHHhcee-----cH-HHHHHHHhHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554433 23 21221111 01000 01 334444555555666667777777776653
No 52
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.92 E-value=1.9e-06 Score=86.50 Aligned_cols=272 Identities=10% Similarity=0.029 Sum_probs=167.9
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc-----hhhHHHhhcCCCcccchHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGS-----LYFWAAHLASPKWGPFASWCCAWLETIGLIA 83 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG-----~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~ 83 (478)
++++++++.|-.+-+...++.+++..-.++...+.-...+...| .-+-.+++||++. + .++.+........
T Consensus 58 sLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~afG~~~-~---~iv~~~~~~~~fg 133 (437)
T KOG1303|consen 58 SLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAAFGPKG-R---LLVSVLQYLELFG 133 (437)
T ss_pred hhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHHhCCCc-e---EeeeHHHHHHHHH
Confidence 56788888888854777778888888888888888888887777 7777888988864 2 3444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCc-cC-chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 011741 84 GMGTQAYAGSQTLQSIILLCTGTNKDGGY-FA-PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIII 161 (478)
Q Consensus 84 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i 161 (478)
....+....++-+..+++... .+. .. ........+++.+.... +...+...+...+.....+........
T Consensus 134 ~~v~y~il~~~~L~~~~~~~~-----~~~~~l~~~~f~iif~~i~~~~s~---lp~~~~l~~~S~~~avmS~~~a~~~~~ 205 (437)
T KOG1303|consen 134 ICVVYIILAGDNLKALFPIVS-----LNDNSLDKQYFIIIFGLIVLPLSQ---LPNFHSLSYLSLVGAVMSTLYAVILIV 205 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----CccccccceehhhhHHHHHHHHHH---CCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 556667777788888777633 111 11 12222333333333333 444455555666655555555555555
Q ss_pred hhheecccccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHH
Q 011741 162 MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIF 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~ 241 (478)
.+....-+.+......... ++. + ..+.++....|+|.|.....+....+|+|+| +.|+.+.+..++..+
T Consensus 206 ~g~~~g~~~~~~~~~~~~~------~~~-~---~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~~~~~~ 274 (437)
T KOG1303|consen 206 LGIADGVGFCAPSGGYLDL------GTI-P---TVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYIIVTFL 274 (437)
T ss_pred HhhccccccCCcccCcccC------CCC-c---chhhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHHHHHHH
Confidence 5554321111111111111 111 1 1156777788999999999999999999988 999999999999999
Q ss_pred HHHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcC
Q 011741 242 GWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSR 321 (478)
Q Consensus 242 y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 321 (478)
|+.++..-+...++..+ +-+...+. ++.+.....++.+.+-.+++......-..-....+.+
T Consensus 275 y~~vai~GY~aFG~~~~---------------~~il~s~~---~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~ 336 (437)
T KOG1303|consen 275 YFPVAIIGYWAFGDSVP---------------DNILLSLQ---PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIG 336 (437)
T ss_pred HHHHHHhhhhhhccccc---------------hhhhhccc---CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhc
Confidence 99999987777732210 11112221 2444556666777777777666555555555544443
No 53
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.64 E-value=2.8e-05 Score=77.32 Aligned_cols=281 Identities=16% Similarity=0.160 Sum_probs=159.6
Q ss_pred cchhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCC-------CCchhhHHHhhcCCCcccchHHHHHHHHHH
Q 011741 7 KNSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPT-------TGSLYFWAAHLASPKWGPFASWCCAWLETI 79 (478)
Q Consensus 7 ~~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~-------~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~ 79 (478)
+++.+.++..+||...+|.|+.+.+.+ .+.++=.-|+.+|.+ .||...|.+|.+|.|| .+.+.+.+...
T Consensus 38 I~GVa~AI~~GGPGAiFWMWi~a~~Gm-atk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~---la~~fai~~~~ 113 (416)
T PF01235_consen 38 IAGVATAIAIGGPGAIFWMWISALLGM-ATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKW---LAILFAIFLII 113 (416)
T ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccch---HHHHHHHHHHH
Confidence 456788999999998888887766544 444555556666642 3899999999999875 55444434333
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 011741 80 GLIAG-MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLV 158 (478)
Q Consensus 80 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~ 158 (478)
.+... ....+-..++.+++. +..++ ...++++.++..++-.-|+|..+++...+.=++.+..++
T Consensus 114 ~~~~~~~~~Q~nsi~~~~~~~------------f~i~~---~~~gi~l~~l~~~vi~GGikrI~~v~~~lVP~Ma~~Yi~ 178 (416)
T PF01235_consen 114 AFGIGFNMVQANSIADALSSA------------FGIPP---WITGIILAILVALVIFGGIKRIAKVSEKLVPFMAILYIL 178 (416)
T ss_pred HHHhhhhHHHHHHHHHHHHhh------------ccccH---HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Confidence 32221 222222222222221 22233 455677777888888899999999999988888887777
Q ss_pred hhhhhheeccccccccc--ccc-eeeccCCCCCCCCc--hhHHH----HHHHhhhhhh---hccchhhhhhhhhcCcccc
Q 011741 159 IIIMLPLVALTTQSASY--VFT-HFEMSPEATGISSK--PYAVI----LSFLVSQYSL---YGYDSAAHLTEETKGADKT 226 (478)
Q Consensus 159 ~~i~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~--~~~~~----~~~~~~~~af---~G~e~~~~~~~E~k~p~k~ 226 (478)
..+..+....+.-++-+ .++ .| ++...... +..+. .++.=.+|+= .|.....+-+.|+|+|.|+
T Consensus 179 ~~l~ii~~n~~~ip~~~~~If~~AF----~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~Q 254 (416)
T PF01235_consen 179 GGLIIIIINIDQIPAAFSLIFSSAF----TPKAAFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIAHAAAETDHPVRQ 254 (416)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHc----CCccchhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHHHHHhcCCCcHHH
Confidence 76666543221111111 122 23 11111110 11121 1222222221 3444456667788999888
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHH
Q 011741 227 GPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGL 306 (478)
Q Consensus 227 ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 306 (478)
=-.++.-..+=..++..+..+.+...- .++.-.+.+ | .+...+++...+| ++...++.+++++-.+++.+
T Consensus 255 Gl~~~~~vFiDTiiVCt~TalvIl~tG-~~~~~~~~~----g----~~l~~~Af~~~~g-~~g~~~v~i~l~lFafTTil 324 (416)
T PF01235_consen 255 GLVQMFEVFIDTIIVCTITALVILVTG-VWSWGSGLE----G----AALTQAAFSTVLG-SWGPYFVAIALFLFAFTTIL 324 (416)
T ss_pred eeeeeehHhHHHHHHHHHHHHHhhccC-CCCCCCcch----H----HHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHH
Confidence 655555444333333333333333221 221111111 1 1445566666555 44778889999999999999
Q ss_pred HHHhhhhhhHHHhc
Q 011741 307 SVTTSAARVVYALS 320 (478)
Q Consensus 307 ~~~~~~sR~l~~~a 320 (478)
++.+..-|-+.-+-
T Consensus 325 g~~~yge~~~~yl~ 338 (416)
T PF01235_consen 325 GWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999988777655
No 54
>PRK11375 allantoin permease; Provisional
Probab=98.55 E-value=0.0011 Score=68.39 Aligned_cols=209 Identities=11% Similarity=-0.007 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCC-chhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 23 VWGWVVVSFFTWFVGLAMAEICSSFPTTG-SLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIIL 101 (478)
Q Consensus 23 ~l~~li~~~~~~~~a~~~~el~~~~p~~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 101 (478)
.-+++...+..+..+....-.+..=++.| +.....|..||.+-.++.+++.++...++ ..+...+..++.+..++.
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~ig---W~~vqt~~~g~al~~~l~ 136 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIM---WFGLQCYAGSLALLILIG 136 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444455445665 67778888989864355555554433222 234445555555554443
Q ss_pred Hhc-CCCCCCC---ccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccccccccccc
Q 011741 102 LCT-GTNKDGG---YFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVF 177 (478)
Q Consensus 102 ~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~ 177 (478)
... ++.+-++ ....+.......+++.++...+-.+|.|...|++.+...+.++..+...+..+...+ .. ...+.
T Consensus 137 ~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g-~~-~~~~~ 214 (484)
T PRK11375 137 KIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVG-IG-PIFDY 214 (484)
T ss_pred HhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Cc-hhhcc
Confidence 221 0000000 000111122223344455666677889999998888777776655555444433221 10 00000
Q ss_pred ceeeccCCCCCCCCchhHHHHHHHhhhhhhh-ccchhhhhhhhhcCcccccchHHHHHHHHHHHH
Q 011741 178 THFEMSPEATGISSKPYAVILSFLVSQYSLY-GYDSAAHLTEETKGADKTGPIAILSSIGIISIF 241 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~-G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~ 241 (478)
.+- +.....+....+..++...+=++. +.-..+..++..||+| +.-++..++..+...+
T Consensus 215 ~~~----~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~-~~~~~~~~g~~i~~~~ 274 (484)
T PRK11375 215 IPS----GIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFR-AQALGQTLGLVVAYIL 274 (484)
T ss_pred Ccc----cccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChh-hhHHHHHHHHHHHHHH
Confidence 010 010111122345444433332333 4445678888888864 4445666555554443
No 55
>PTZ00206 amino acid transporter; Provisional
Probab=98.50 E-value=0.00028 Score=72.71 Aligned_cols=232 Identities=10% Similarity=0.018 Sum_probs=128.2
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 88 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~ 88 (478)
+++.+++.+|-....+..++.++++......+.+.+.+ ++.-+...-.++.+||+ ..+++.....+.....+..+
T Consensus 80 sLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~----g~~~v~~~~~~~~~G~cv~Y 154 (467)
T PTZ00206 80 GLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPW----GSYYVAATRAFHGFSACVAY 154 (467)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHH
Confidence 46677888887744454555555555555555555554 33445666677775554 56777777777777777778
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCchh-H-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhee
Q 011741 89 AYAGSQTLQSIILLCTGTNKDGGYFAPKW-L-FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV 166 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 166 (478)
....++.+...+..... +++..+.+ . .....+...+.+-+.-.+.++..++.+.+.....+...+.+++.....
T Consensus 155 lIiigd~l~~~l~~~~~----~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~ 230 (467)
T PTZ00206 155 VISVGDILSATLKGTNA----PDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMN 230 (467)
T ss_pred HHHHHHHHHHHhccCCc----cchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 88888888777643110 01100000 0 001111112223333455666666665444333222222222222211
Q ss_pred cccccccccccceeeccCCC--CCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcc-cccchHHHHHHHHHHHHHH
Q 011741 167 ALTTQSASYVFTHFEMSPEA--TGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGAD-KTGPIAILSSIGIISIFGW 243 (478)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~-k~ip~ai~~~~~~~~~~y~ 243 (478)
....+..+...... .+. .-++ .......++....|+|.+.......-+|+|||. |+..+....+..++.++|.
T Consensus 231 ~~~~~~~~~~~~~~---~~~~~~~f~-~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~ 306 (467)
T PTZ00206 231 GLPENIKNVSVGKD---DNAEIILFN-SGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYV 306 (467)
T ss_pred cCcccccccccCCC---CCCceEEec-CchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 10000000000000 000 0011 112467788888999999999999999999864 6778888899999999999
Q ss_pred HHHHHHHhhc
Q 011741 244 ALILALCFSI 253 (478)
Q Consensus 244 l~~~~~~~~~ 253 (478)
+..+.-+...
T Consensus 307 ~~G~~GYl~f 316 (467)
T PTZ00206 307 LTAFFGYMDF 316 (467)
T ss_pred HHHHhhhhcc
Confidence 9888866666
No 56
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=98.42 E-value=0.0001 Score=72.66 Aligned_cols=285 Identities=16% Similarity=0.177 Sum_probs=163.3
Q ss_pred cchhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCC-------CCchhhHHHhhcCCCcccchHHHHHHHHHH
Q 011741 7 KNSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPT-------TGSLYFWAAHLASPKWGPFASWCCAWLETI 79 (478)
Q Consensus 7 ~~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~-------~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~ 79 (478)
+++.+.++..+||....|.|+.+.+.+ ...+.=+-|+..|.+ .||.-.|.+|.+|.|| .+.+.+....+
T Consensus 82 IaGVAtAI~~GGPGAvFWMWi~Al~Gm-at~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~---l~v~FA~~li~ 157 (452)
T COG1115 82 IAGVATAIALGGPGAVFWMWIVALFGM-ATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMRW---LAVLFAFALIA 157 (452)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHH-HHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCcH---HHHHHHHHHHH
Confidence 356778999999998899998776654 445555557777751 4899999999999775 66665545555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 011741 80 GLI-AGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLV 158 (478)
Q Consensus 80 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~ 158 (478)
.+- ......+-..++.+++.++ .+ ....++++.++...+-+-|+|..+|+.....=++-+..++
T Consensus 158 afg~i~n~vQ~NsIa~a~~~af~------------~~---~~~~gi~la~l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~ 222 (452)
T COG1115 158 AFGFIGNGVQSNSIASALANAFG------------IP---PLVTGIVLALLVALVIFGGIKRIAKVSSKVVPFMAILYVL 222 (452)
T ss_pred HHHhhcchhhHHHHHHHHHHhcC------------Cc---HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 443 3444455555555554321 12 4567778888888899999999999988877766666555
Q ss_pred hhhhhheeccccccccc--cc-ceeeccCCCCCCCCc--hhHHHHHHHhhhhhh-hccchh--hhhhhhhcCcccccchH
Q 011741 159 IIIMLPLVALTTQSASY--VF-THFEMSPEATGISSK--PYAVILSFLVSQYSL-YGYDSA--AHLTEETKGADKTGPIA 230 (478)
Q Consensus 159 ~~i~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~af-~G~e~~--~~~~~E~k~p~k~ip~a 230 (478)
..+..+...-++-++-. .+ +.|++....+|.-.. ..++..++-=..|+= .|..++ ++.+.++++|.|+=-..
T Consensus 223 ~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGlv~ 302 (452)
T COG1115 223 VALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQ 302 (452)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhHHH
Confidence 54444432211111111 11 222110111122110 012333333333332 344444 45556778888774444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHh
Q 011741 231 ILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTT 310 (478)
Q Consensus 231 i~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (478)
+....+=..++.....+.+...- .++.-.. .+ |. +...+++...+|. ++..++.+.+++-.+++.+++.+
T Consensus 303 ~~gvfiDT~iVCt~Ta~iIL~sg-~~~~~~~-~~---G~----~ltq~A~~~~~g~-~G~~fv~i~l~lFafTTIlg~yy 372 (452)
T COG1115 303 MLGVFIDTLVVCTATAFIILLSG-AWNSGGG-LS---GA----ALTQAAFSSHLGS-WGSYFVAIALFLFAFTTILGWYY 372 (452)
T ss_pred HhhhhhhhhHHhhHHHHHHHHcC-CcccCCC-Cc---hH----HHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322213333333333322221 2211111 01 21 5556666666565 37888899999999999999999
Q ss_pred hhhhhHHHhc
Q 011741 311 SAARVVYALS 320 (478)
Q Consensus 311 ~~sR~l~~~a 320 (478)
..-|-+.-+-
T Consensus 373 yge~~~~fl~ 382 (452)
T COG1115 373 YGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHh
Confidence 8888776544
No 57
>PLN03074 auxin influx permease; Provisional
Probab=98.41 E-value=0.00023 Score=73.18 Aligned_cols=58 Identities=7% Similarity=-0.012 Sum_probs=47.5
Q ss_pred HHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011741 195 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 253 (478)
Q Consensus 195 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~ 253 (478)
.+..++...+|+|.|.-.....-.|||||+ +.++....+...+..+|+...+..+...
T Consensus 234 ~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~f 291 (473)
T PLN03074 234 LYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAF 291 (473)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHhccChh-cccchHHHHHHHHHHHHHHHHHeeeeee
Confidence 466666678899999999999999999995 5888888888888888888766655555
No 58
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.30 E-value=0.00042 Score=69.01 Aligned_cols=263 Identities=12% Similarity=0.032 Sum_probs=152.6
Q ss_pred chhhhhhhccCcchhHHHHHH-HHHH---HHHHHHHHHHHhhhcCCCC------------chhhHHHhhcCCCcccchHH
Q 011741 8 NSEEKCLLYAGPASLVWGWVV-VSFF---TWFVGLAMAEICSSFPTTG------------SLYFWAAHLASPKWGPFASW 71 (478)
Q Consensus 8 ~~~~~~~~~~G~~~~~l~~li-~~~~---~~~~a~~~~el~~~~p~~G------------G~y~~~~~~~g~~~g~~~g~ 71 (478)
-+++.++..+|-..-.+.-.+ +.+. +-...-|--++++++-+.- +.+.| .|. +|+...+
T Consensus 66 l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~~~~~-~r~----~g~~~r~ 140 (449)
T KOG1304|consen 66 LSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEGGPGW-LRK----YGPAARF 140 (449)
T ss_pred ccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCcHH-HHh----hcHHHHH
Confidence 456788888887744444333 3332 2223345566676653211 11224 222 6677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHH
Q 011741 72 CCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVL-NTFALEVIAFIDIISMW 150 (478)
Q Consensus 72 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l-~~~g~~~~~~~~~~~~~ 150 (478)
++-....+.+...+..+....++-+.++++. +....+......+.......++ ..+..|...-++.+.-+
T Consensus 141 ~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---------~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv 211 (449)
T KOG1304|consen 141 VVNFFLVITQLGFCCVYLVFVATNLKQIVDE---------HSPGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANV 211 (449)
T ss_pred HHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---------cCCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHH
Confidence 7777788888777888888888888888752 1222333333333333333333 34456665555555555
Q ss_pred HHHHHHHHhhhhhheeccccccccc-ccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccc-
Q 011741 151 WQVAGGLVIIIMLPLVALTTQSASY-VFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGP- 228 (478)
Q Consensus 151 ~~i~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip- 228 (478)
+.++.++++....+...+ +. +...+ ++|. .+...+.++.|+|-|.-.+--+=+|+|+|+ ++|
T Consensus 212 ~~~~g~~ii~~y~~~~~~-----~~~~~~~~------~~~~----~~~lf~GtaifafEGig~VLPlEn~Mk~P~-~F~g 275 (449)
T KOG1304|consen 212 FILVGLAIIMYYLVQDLP-----PTSDLPAV------TGWS----GLPLFFGTAIFAFEGIGMVLPLENSMKKPQ-KFPG 275 (449)
T ss_pred HHHHHHHHHHHHHHhccC-----Cccccccc------cchh----hhHHHHHHHHHHhccceEEEehhhcccChh-hcCC
Confidence 555555554444332211 11 11112 1222 355667778899999999999999999985 456
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHH
Q 011741 229 --IAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGL 306 (478)
Q Consensus 229 --~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 306 (478)
..+-.++.++.++|......-+...++ +..+..+ ...+..+.+..+-+...++.+-+..
T Consensus 276 ~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~--~v~~sIT-----------------LNLP~~~l~~~Vkl~~ai~I~ls~p 336 (449)
T KOG1304|consen 276 PFGVLNLGMGIVTLLYIFLGFFGYLAFGD--DVKGSIT-----------------LNLPQEILSQTVKLLLAIAIFLTYP 336 (449)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhccc--cccceEE-----------------ecCCccHHHHHHHHHHHHHHHHcCc
Confidence 888889999999998876665544421 1211111 1112233556666667777777777
Q ss_pred HHHhhhhhhHHHh
Q 011741 307 SVTTSAARVVYAL 319 (478)
Q Consensus 307 ~~~~~~sR~l~~~ 319 (478)
-+++-..++++.-
T Consensus 337 LQ~yv~~eIi~~~ 349 (449)
T KOG1304|consen 337 LQFYVPIEIIEPG 349 (449)
T ss_pred hhhhhhHHHHHHh
Confidence 7888888888753
No 59
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.27 E-value=0.001 Score=66.57 Aligned_cols=229 Identities=17% Similarity=0.128 Sum_probs=125.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccc-cccc--cccceeeccCCCCCCCC
Q 011741 115 PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT-QSAS--YVFTHFEMSPEATGISS 191 (478)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~ 191 (478)
+.+......+++..+...+..+.-|...++.++++=+.++.++++++.++....+. ++++ +..+++ ..|+.
T Consensus 114 ~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f-----~~Gf~- 187 (427)
T PF05525_consen 114 SNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPF-----FKGFL- 187 (427)
T ss_pred cccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHH-----HHHHH-
Confidence 45566777888888999999999999999999999999999999988888764221 1111 111111 00110
Q ss_pred chhHHHHHHHhhhhhhhccchhhhhhhhhcC---cccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCC
Q 011741 192 KPYAVILSFLVSQYSLYGYDSAAHLTEETKG---ADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG 268 (478)
Q Consensus 192 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~---p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g 268 (478)
+++..+=++....|+ ..-..+-.....|| -+|..-++-.++...-.++|......=... .+...++.+ |
T Consensus 188 eGY~TMD~laal~Fg--~iIi~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~---~~~~~~~~~---g 259 (427)
T PF05525_consen 188 EGYQTMDALAALAFG--IIIINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATS---SGSFPDDIN---G 259 (427)
T ss_pred HHHhhhhHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---cccccCCCC---H
Confidence 111111112211122 11111111222233 223333444444444444554433331111 111122221 2
Q ss_pred CccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccccCCCChHHH-HHH
Q 011741 269 AFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNA-VWL 347 (478)
Q Consensus 269 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A-~~~ 347 (478)
++.+.+.....+|+. +..++.+.+.++|+.+..+-..+.+....+. .| |.+++. +.+
T Consensus 260 ----~~lL~~i~~~~~G~~-G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~---------------~~--kisY~~~v~i 317 (427)
T PF05525_consen 260 ----AELLSQIANHLFGSA-GQILLGIIVFLACLTTAIGLISACAEYFSEL---------------FP--KISYKVWVII 317 (427)
T ss_pred ----HHHHHHHHHHHcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hc--ccChHHHHHH
Confidence 255556556666665 7788899999999999999999988766642 22 223322 333
Q ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 348 CAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPI 385 (478)
Q Consensus 348 ~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 385 (478)
.++++.++.- -.++.+.+.+.=...+.|=..+
T Consensus 318 ~~i~S~~ian------~Gl~~Ii~~s~PiL~~iYP~~I 349 (427)
T PF05525_consen 318 FTIFSFIIAN------LGLDQIIKISVPILMFIYPVAI 349 (427)
T ss_pred HHHHHHHHHH------hCHHHHHHHHHHHHHHHhHHHH
Confidence 4455555433 3568888888777777776543
No 60
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.20 E-value=0.0015 Score=61.87 Aligned_cols=243 Identities=12% Similarity=0.121 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 011741 22 LVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGS-QTLQSII 100 (478)
Q Consensus 22 ~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~ 100 (478)
..++.++.+++....+....|+++++ ++...-.+.++.+||++++..-.+.-... ...+....+.+ +.+.+.+
T Consensus 38 s~~gIivs~vlf~~~g~vim~ig~~f-~a~~y~~~~~~v~~~~~~ki~d~~iif~l-----f~~~vVM~AGags~~~e~~ 111 (349)
T COG3949 38 SILGIILSTVLFTLSGAVIMTIGKKF-NATSYREILKYVSGPKFAKIIDIIIIFFL-----FSTAVVMLAGAGSLLEEMF 111 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhccchhHHHHHh
Confidence 56788899999999999999999999 56677889999988876554433322111 11222222222 2444443
Q ss_pred HHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccce
Q 011741 101 LLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFA-LEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTH 179 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~ 179 (478)
+ .|.|... +.++.....+.+++ .+..-+++.+.+-+.++.+..+...... ....++.+. +
T Consensus 112 ~------------lP~wiGa---li~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~v~~~~~f-~~~~~~a~~---~ 172 (349)
T COG3949 112 G------------LPYWIGA---LIIILLVLILLFLGRVEGIITVNGIITPFLIIILVLVTLSFQF-TNLGNAAQI---V 172 (349)
T ss_pred C------------ccHHHHH---HHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHHHHHHHHH-hhccchhhh---c
Confidence 2 2444332 34455555555565 5555555555444444332222111111 011111111 1
Q ss_pred eeccCCCCCCCCchhHHHHHHHhhhh-hhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 011741 180 FEMSPEATGISSKPYAVILSFLVSQY-SLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSY 258 (478)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~ 258 (478)
. ....+|.. . +....-+ ..........+++|+|+ +|+.-++-..+-++.+++-.+......... ++
T Consensus 173 ~---~~~~~W~~----~--~~~Y~alNi~~~~avLv~lg~~~~~-~~~~~~g~l~gglIlgvl~~l~nlsLi~~~---~~ 239 (349)
T COG3949 173 L---TKQGNWKA----S--AVGYGALNILVAVAVLVPLGGRMES-RKVSGIGGLIGGLILGVLLFLINLSLIALY---DK 239 (349)
T ss_pred C---CcCCChHH----H--HHhhhhHHHHhHhHhhhhhcccccc-cchhhhhhhhhhHHHHHHHHHHHHHHHhhc---ch
Confidence 1 11223421 1 1111111 11223335667899999 567778888888887877777777766665 35
Q ss_pred hhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011741 259 LYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAAR 314 (478)
Q Consensus 259 l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 314 (478)
+.+.+ .| . .+..... + +....++.+.+....+++....+++.+|
T Consensus 240 v~~~d-----IP-~----l~i~~~~-~-~~i~lvm~vIi~~~IytT~vg~iy~l~~ 283 (349)
T COG3949 240 VVNYD-----IP-L----LTIAKNF-S-PLIGLVMSVIIWLEIYTTTVGLIYGLAS 283 (349)
T ss_pred hhccC-----Cc-H----HHHHHhc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444 34 2 2322222 2 3367777888888888888777766433
No 61
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=98.16 E-value=0.0059 Score=59.86 Aligned_cols=232 Identities=14% Similarity=0.090 Sum_probs=122.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccc-cccccc--cceeeccCCCCCCCC
Q 011741 115 PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT-QSASYV--FTHFEMSPEATGISS 191 (478)
Q Consensus 115 ~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~ 191 (478)
+.+...+..+++..+...+.+..-|...|+.++++=++++.++++.+..+....+. ++++.. .+++ ..|+.
T Consensus 116 ~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf-----~~Gfl- 189 (431)
T COG1114 116 SLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPF-----SKGFL- 189 (431)
T ss_pred cchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChH-----HHHHh-
Confidence 45556777888889999999999999999999999999999888888876643221 211111 1222 11221
Q ss_pred chhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhh-hhcCCCccCCCc
Q 011741 192 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSY-LYDKSNETAGAF 270 (478)
Q Consensus 192 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~-l~~~~~~~~g~p 270 (478)
+++..+=++... +|...-..+--..-.++ +|++.|-.+.+-++.++.-.+.-.. ..-++..++ ...+.+ . |.
T Consensus 190 eGY~TMDaLAal--~FgivIv~alk~~g~~~-~~~~~~~~~~aglIa~i~La~iY~~-L~ylGa~s~~~~~~~~-n-G~- 262 (431)
T COG1114 190 EGYLTMDALAAL--AFGIVIVNALKSKGVTT-KKQIIKYTIKAGLIAAILLALIYLS-LFYLGATSASAAGLAA-N-GG- 262 (431)
T ss_pred cchHHHHHHHHH--HHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccchHhhccccc-c-hH-
Confidence 122222222222 22222221221222233 2344455544444444332222222 222212111 111111 1 21
Q ss_pred cHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccccCCCChHHHHHHHHH
Q 011741 271 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA 350 (478)
Q Consensus 271 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~ 350 (478)
+++.+.....||+. +..+..+...++|+.+......+++... +|+-||-.-..++ .+..+
T Consensus 263 ---~IL~~~s~~~fG~~-G~~lL~~iv~lACLTTaiGLi~a~aefF---------------~~~~p~~SY~~~v-~if~i 322 (431)
T COG1114 263 ---QILSAYSQHLFGSY-GSILLGLIVFLACLTTAVGLIVACAEFF---------------SKLVPKLSYKTWV-IIFTL 322 (431)
T ss_pred ---HHHHHHHHHHhchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhcccccHHHHH-HHHHH
Confidence 45555555555654 7788899999999999999888877544 3433322222222 22233
Q ss_pred HHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 351 ICIILGLPILKVNVVFTAITSICTIGWVGGYAVPI 385 (478)
Q Consensus 351 i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 385 (478)
++..+. +..++.+..++.=.....|=..+
T Consensus 323 ~sflva------n~GL~~Ii~isvPvL~~iYPiaI 351 (431)
T COG1114 323 ISFLVA------NLGLEQIIKISVPVLTAIYPIAI 351 (431)
T ss_pred HHHHHH------HhhHHHHHHHHHHHHHHHhHHHH
Confidence 333332 24678888887777777776643
No 62
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.12 E-value=0.0038 Score=62.65 Aligned_cols=281 Identities=17% Similarity=0.181 Sum_probs=143.7
Q ss_pred cchhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcC---C----CCchhhHHHhhcCCCcccchHHHHHHHHHH
Q 011741 7 KNSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFP---T----TGSLYFWAAHLASPKWGPFASWCCAWLETI 79 (478)
Q Consensus 7 ~~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p---~----~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~ 79 (478)
+.+.+.++..+||.+.+|.|+.+.+.+ ...+.-.-++.++. + .||...|.+|.++.|| .|.+.+.. .+
T Consensus 66 I~Gva~Ai~~GGpGAvFWMWI~allGm-~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~---lg~lfa~~-~i 140 (425)
T TIGR00835 66 IVGVATAIAIGGPGAVFWMWVTAFIGM-ATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRW---LAVLFAVF-LI 140 (425)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHH-HHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccH---HHHHHHHH-HH
Confidence 456677889999998888888776655 33333334444443 2 2455588899877553 55544444 22
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 011741 80 GL-IAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLV 158 (478)
Q Consensus 80 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~ 158 (478)
.+ .......+-..++.+++. +..+ ....++.+.++...+-.-|+|..+|+...+.-++....+.
T Consensus 141 ~~f~~~~~~Q~nsi~~~~~~~------------~~~~---~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~m~~~Y~~ 205 (425)
T TIGR00835 141 ASFGIGNMVQANAIASALSNA------------FNVP---KLVTGIVLTVLTALIIFGGLKRIAKISSVVVPFMALLYVI 205 (425)
T ss_pred HHHhhhHHHHHHHHHHHHHHH------------cCCc---HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 22 222233333333333321 1122 2345556666666666669999999999988888877665
Q ss_pred hhhhhheeccccccc--ccccc-eeeccCCCCCCCCchhH----HHHHHHhhhhhh---hccchhhhhhhhhcCcccccc
Q 011741 159 IIIMLPLVALTTQSA--SYVFT-HFEMSPEATGISSKPYA----VILSFLVSQYSL---YGYDSAAHLTEETKGADKTGP 228 (478)
Q Consensus 159 ~~i~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~af---~G~e~~~~~~~E~k~p~k~ip 228 (478)
..+.......++-++ +..++ .|++..-.+|.- +.. +..++-=..|+= .|....++-+.|+++|.|+=-
T Consensus 206 ~~l~ii~~n~~~lp~~~~~If~~AF~~~a~~GG~~--G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl 283 (425)
T TIGR00835 206 MALYIIIMNIEQLPAVISLIFRSAFGGDAAAGGFA--GSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGL 283 (425)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHHhhHHHHhccccccCcHHHHHHHhcCCCcHHHHH
Confidence 544333211111111 11111 221000001100 101 111222222221 233345566777888888754
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHH
Q 011741 229 IAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSV 308 (478)
Q Consensus 229 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 308 (478)
.++.--.+=..++..+..+.+...- .+++- ++.+ |. +....+++..+|. ++..++.+..++-.+++.+++
T Consensus 284 ~~~~~vfiDTivvCt~Talvil~tg-~~~~~-~~~~---g~----~lt~~af~~~~g~-~g~~~v~i~~~lFaftTii~~ 353 (425)
T TIGR00835 284 VQMLGVFIDTMIVCTATALVILLSG-VWNNG-EGLS---GA----QLTQQALSYGLGS-FGAVFVAVALFLFAFSTIIGW 353 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-ccCCC-CCCc---HH----HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 4444333323333333333322221 22210 0101 21 3444555555443 367888999999999999999
Q ss_pred HhhhhhhHHHh
Q 011741 309 TTSAARVVYAL 319 (478)
Q Consensus 309 ~~~~sR~l~~~ 319 (478)
.+..-+-+.-+
T Consensus 354 ~yyge~~~~yl 364 (425)
T TIGR00835 354 YYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHh
Confidence 99888877655
No 63
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.10 E-value=2.2e-07 Score=94.35 Aligned_cols=275 Identities=13% Similarity=0.073 Sum_probs=145.7
Q ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHH
Q 011741 9 SEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFP---TTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGM 85 (478)
Q Consensus 9 ~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p---~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~ 85 (478)
+++++++.+|-....+..++.+++.......+.|.....| +.-...+-.++.+||+. .++......+......
T Consensus 23 ~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~~~----~~~~~~~~~~~~~g~~ 98 (409)
T PF01490_consen 23 SLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGPKG----KWFVDICIFIYLFGSC 98 (409)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc----cccccchheecccccc
Confidence 5678888888886677677777888888888888888765 33334444577777764 4443334444444444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011741 86 GTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNT-FALEVIAFIDIISMWWQVAGGLVIIIMLP 164 (478)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~i~~~~~~~i~~~ 164 (478)
..+....++.+..+++... .+...+...... ...++...+.. +..+.....+.......+..+ .+.+...
T Consensus 99 v~y~i~~~~~l~~~~~~~~-----~~~~~~~~~~~~---i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~-~~~~~~~ 169 (409)
T PF01490_consen 99 VAYLIIIGDSLSSLIPSFF-----GDLFISRYVWII---IFALIVLPLSFLKNLKSLRYLSILGLFSIFYFI-VIVVIYI 169 (409)
T ss_pred ceeEEEeeeeeeccccccc-----cccccccccccc---ccccccccccccchhhHHHHHhhhhhhccceee-eeeccee
Confidence 4455555666665553311 001111111111 12222222222 233333333322222222110 1111111
Q ss_pred eecccccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCccc--ccchHHHHHHHHHHHHH
Q 011741 165 LVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADK--TGPIAILSSIGIISIFG 242 (478)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k--~ip~ai~~~~~~~~~~y 242 (478)
......++.+.. . ++.....+..++..++....|+|.+........+|+|+|+| ++.|....+..++.++|
T Consensus 170 ~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y 242 (409)
T PF01490_consen 170 ISYGPGEPSGVP--S-----PPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIY 242 (409)
T ss_pred eeeecccccccc--c-----ccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHh
Confidence 111001111111 0 10001112246888888999999999999999999999876 46699999999999999
Q ss_pred HHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcC
Q 011741 243 WALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSR 321 (478)
Q Consensus 243 ~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 321 (478)
.+....-....++ +..+ + +...+.+. ++...+..+...+....+.........+.+...-+
T Consensus 243 ~~~g~~gy~~fg~--~~~~------------~-il~n~~~~---~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~ 303 (409)
T PF01490_consen 243 LLFGIFGYLAFGD--SVQG------------N-ILLNLPND---DVLIIIARILLVISLLLSYPLQLFPARNSLENLLF 303 (409)
T ss_pred hhhhhcccceeee--eecc------------h-hhhcCCCc---ccccccccccchhhhhhccccccchhHhhhhhhee
Confidence 9988876666521 1110 1 11222211 12344555555666666666666666666666554
No 64
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.92 E-value=0.0037 Score=62.23 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=36.0
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcC
Q 011741 276 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSR 321 (478)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 321 (478)
..+.+.+.+|.++...++.++.+.+.+++......+.+|.+.+.-+
T Consensus 241 ~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~ 286 (358)
T PF01566_consen 241 AAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLG 286 (358)
T ss_pred HHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhc
Confidence 3355566667555888999999999999999999998888876553
No 65
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.90 E-value=0.044 Score=56.92 Aligned_cols=245 Identities=11% Similarity=0.052 Sum_probs=109.9
Q ss_pred HHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchh
Q 011741 38 LAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKW 117 (478)
Q Consensus 38 ~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (478)
.-+.+++++. +.=...+|.++-+|++. ...+.+....+......+......+..++.+++. +.+
T Consensus 96 ~~~~~~~r~~-~~~T~~e~l~~Ryg~~~---~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi------------~~~ 159 (483)
T PRK09442 96 KKFAILARKY-NAVTLNDMLRARYQSRL---LVWLASLSLLVFFFAAMTAQFIGGARLLETATGI------------SYE 159 (483)
T ss_pred HHHHHHHHHc-CCccHHHHHHHHhCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CHH
Confidence 3444555554 44567778888777653 3444444444444444555555666666665422 233
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccccc--ccc---ccceeeccCCCCCCCCc
Q 011741 118 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQS--ASY---VFTHFEMSPEATGISSK 192 (478)
Q Consensus 118 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~ 192 (478)
...++. ..++....-.-|.|...+.+.+-..+.++..+++.+..+...++.+. .+. +.+.+++ .+..++.+
T Consensus 160 ~~iii~--~~iv~iYt~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~-~~~~~~~~- 235 (483)
T PRK09442 160 TGLLIF--GITVALYTAFGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTP-QGADDILS- 235 (483)
T ss_pred HHHHHH--HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCC-CCCCcccc-
Confidence 333322 22234444556777777776666666665555444433322111100 000 0000100 01112211
Q ss_pred hhHHHHH-HHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCcc
Q 011741 193 PYAVILS-FLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 271 (478)
Q Consensus 193 ~~~~~~~-~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~ 271 (478)
...... .....+...+.....+-.-..|| .|+..|+..++.+....+++.....-.....-.++..+.+ +.
T Consensus 236 -~~~~~~~~~~~~~g~~~~p~~~qR~~aaks-~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~~~~-----~~- 307 (483)
T PRK09442 236 -PPFMTSFWILVCFGVIGLPHTAVRCMSYKD-SKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLTVPD-----KV- 307 (483)
T ss_pred -HHHHHHHHHHHHHHHhCCCHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-----ch-
Confidence 111111 11112223333333333334677 4667788888776666655543332111110011111111 11
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011741 272 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARV 315 (478)
Q Consensus 272 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 315 (478)
......+. -+++..-++..+.+.+..++..+.+.+.+-.
T Consensus 308 ~p~l~~~~-----lp~~l~gl~~a~~~aA~mST~~s~l~~~ss~ 346 (483)
T PRK09442 308 IPTLMLKV-----LPPFAAGIFLAAPMAAIMSTVDSQLLQSSST 346 (483)
T ss_pred HHHHHHHH-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21333332 2344566666677777777777777666553
No 66
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.74 E-value=0.054 Score=54.53 Aligned_cols=223 Identities=11% Similarity=0.115 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccc-ccc-c-cccceeeccCCCCCCCCchh
Q 011741 118 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT-QSA-S-YVFTHFEMSPEATGISSKPY 194 (478)
Q Consensus 118 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~ 194 (478)
.....++++..+...+..+.-|...++.++++=+.++.++++++.++....+. +++ + +..+++ .+|+. +++
T Consensus 121 ~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f-----~~Gf~-eGY 194 (439)
T PRK15433 121 PLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAF-----SNGFV-NGY 194 (439)
T ss_pred HHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhH-----HHHHH-hhH
Confidence 44567888888999999999999999999999999999999888888764221 111 1 111111 01111 122
Q ss_pred HHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHH----HHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCc
Q 011741 195 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAI----LSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF 270 (478)
Q Consensus 195 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai----~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p 270 (478)
..+=++....|+..=.++. -....|| +|++.|.. .++.....++|......=... .+...+.++ |.
T Consensus 195 ~TMDalaal~Fg~iii~~i--~~~G~~~-~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s---~~~~~~~~~---g~- 264 (439)
T PRK15433 195 LTMDTLGAMVFGIVIVNAA--RSRGVTE-ARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDS---ASLVDQSAN---GA- 264 (439)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cccccCCCc---Hh-
Confidence 2222233222332212222 1222444 23334444 444444444444433332211 111211111 22
Q ss_pred cHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccccCCCChH-HHHHHHH
Q 011741 271 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPS-NAVWLCA 349 (478)
Q Consensus 271 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~-~A~~~~~ 349 (478)
++........+|+. +..++.+...++|+++..+...+.++.+.+.-+ .|+ ....+.+
T Consensus 265 ---~il~~~~~~~~G~~-G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~------------------isY~~~v~i~~ 322 (439)
T PRK15433 265 ---AILHAYVQHTFGGG-GSFLLAALIFIACLVTAVGLTCACAEFFAQYVP------------------LSYRTLVFILG 322 (439)
T ss_pred ---HHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------------CcHHHHHHHHH
Confidence 44444444555554 788889999999999999999999987654221 121 2333444
Q ss_pred HHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHH
Q 011741 350 AICIILGLPILKVNVVFTAITSICTIGWVGGYAVP 384 (478)
Q Consensus 350 ~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~ 384 (478)
+++.++.. -.++.++....=.....|=..
T Consensus 323 l~S~~lSn------~G~~~II~~s~PiL~~iYP~~ 351 (439)
T PRK15433 323 GFSMVVSN------LGLSQLIQISVPVLTAIYPPC 351 (439)
T ss_pred HHHHHHHH------hHHHHHHHHHHHHHHHHhHHH
Confidence 44444433 466788877766666666553
No 67
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.71 E-value=0.086 Score=54.57 Aligned_cols=244 Identities=13% Similarity=0.063 Sum_probs=108.8
Q ss_pred HHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHH
Q 011741 40 MAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLF 119 (478)
Q Consensus 40 ~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (478)
+.++.++. +.-...+|.++-+|++.. ..+.+....+.............+..++.+++. +.+..
T Consensus 97 ~~~~~~~~-~~~T~~e~l~~Ryg~~~~---~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi------------~~~~~ 160 (471)
T TIGR02119 97 FAIISRKY-NAITINDVLKARYNNKFL---VWLSSISLLVFFFSAMVAQFIGGARLIESLTGL------------SYLTA 160 (471)
T ss_pred HHHHHHHc-CCccHHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHH
Confidence 34444443 445788888888776542 333333333333333333444445555555422 33333
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccccc--ccc---ccceeeccCCCCCCCCchh
Q 011741 120 LCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQS--ASY---VFTHFEMSPEATGISSKPY 194 (478)
Q Consensus 120 ~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 194 (478)
.++..+ +.......-|.|...+.+.+-..+.++..+++.+..+...++... ++. ..+.+++ .+..++.. .
T Consensus 161 iii~~~--iv~iYt~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~-~~~~~~~~--~ 235 (471)
T TIGR02119 161 LFIFSS--SVLIYTTFGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITP-FGGDGGLT--K 235 (471)
T ss_pred HHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCC-CCCCcchh--h
Confidence 333222 233444456777777777666666665555544433332211100 000 0000100 01111110 0
Q ss_pred HHHHHH-HhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHH
Q 011741 195 AVILSF-LVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 273 (478)
Q Consensus 195 ~~~~~~-~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~ 273 (478)
.+...+ ....+...+.....+..-..|| +|+..|+..++.++...++....+.-.....-..++.+++ +. ..
T Consensus 236 ~~~~~~~~~~~~g~~~~p~~~~R~~aak~-~~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d-----~~-~p 308 (471)
T TIGR02119 236 PFVASFWILVGIGVIGLPQTAVRCMSYKD-SKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPD-----KV-IP 308 (471)
T ss_pred hHHHHHHHHHHHHHhCchHHHHHHHhcCC-HHHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc-----ch-HH
Confidence 111111 1111233333333344555677 5788899888877666655443332111110011221111 11 22
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 011741 274 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 316 (478)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 316 (478)
....+.+ +++..-++....+.+.+++..+.+++.+-.+
T Consensus 309 ~~~~~~l-----p~~~~gl~~a~llaA~mST~~s~l~~~ss~~ 346 (471)
T TIGR02119 309 LLAIKVL-----PPILAGIFLAAPMAAIMSTVNSLLLQSSSTI 346 (471)
T ss_pred HHHHHHc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 3345566666677777888777777776553
No 68
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.12 Score=52.09 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCC-chhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 24 WGWVVVSFFTWFVGLAMAEICSSFPTTG-SLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILL 102 (478)
Q Consensus 24 l~~li~~~~~~~~a~~~~el~~~~p~~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 102 (478)
++.+++.++........++++ |+.| ....-.|..||.+ -+.+.....+..+....+.+...+++....
T Consensus 56 ~aillG~llG~i~~A~~s~~G---a~~Glpqmi~sR~~fG~~----Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~---- 124 (442)
T COG1457 56 LAILLGNLLGGIFMAYFSYQG---ARTGLPQMILSRYPFGVK----GSILPSLLNGITLIGWFGVNVILSGIAIGS---- 124 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---cccCCChheeecccccch----hHHHHHHHHHHHHhhHHHHHHHHhcccccc----
Confidence 333444444434444444444 4444 3444456666664 445545455555554455555555544111
Q ss_pred hcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011741 103 CTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLP 164 (478)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~ 164 (478)
....+.+... +..-++.++..++|.|...+++++......+.........+
T Consensus 125 --------~~~~~~~~~i---li~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~ 175 (442)
T COG1457 125 --------GTGLPVWAGI---LIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLF 175 (442)
T ss_pred --------CCCCcHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222332222 34445677778889999999999988888876666555444
No 69
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.54 E-value=0.033 Score=56.45 Aligned_cols=137 Identities=12% Similarity=0.055 Sum_probs=72.0
Q ss_pred chhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHH
Q 011741 8 NSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGT 87 (478)
Q Consensus 8 ~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~ 87 (478)
+..+.+... |-. ..+..+...+..+..+..+.+.-++.+ .-...+|.++-+|++. ...+.+....+......+.
T Consensus 26 g~~~~~y~~-G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~~---~~~~~~~~~i~~~~~~~~~ 99 (407)
T TIGR00813 26 GLPGAIYAY-GFA-IGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKRI---LRGLSVLSLILYIFLYMSV 99 (407)
T ss_pred cCcHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCchH---HHHHHHHHHHHHHHHHHHH
Confidence 344455554 322 222223333344555666666554432 4567777888766643 3444555555555555666
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011741 88 QAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLP 164 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~ 164 (478)
.....+..++.+++. +.+...++..+ ++......-|.|...+.+.+=..+.++..+++.+..+
T Consensus 100 q~~g~~~il~~~~gi------------~~~~~~ii~~~--i~~~Yt~~GG~~av~~Td~iQ~~i~~~~~i~~~~~~~ 162 (407)
T TIGR00813 100 DLFSGALLIELITGL------------DLYLSLLLLGA--ITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVFAF 162 (407)
T ss_pred HHHHHHHHHHHHhCc------------hHHHHHHHHHH--HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677665432 33333333222 2333444567887777766666666555444444333
No 70
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.47 E-value=0.14 Score=51.12 Aligned_cols=192 Identities=11% Similarity=0.114 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHhhhhhheecccccccccccceeeccCCCCCCCCchh
Q 011741 116 KWLFLCMYIGLTIIWAVLNTFALEV-IAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPY 194 (478)
Q Consensus 116 ~~~~~~i~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (478)
++.....-+..+.+...+-.+|+|. .-|.++++.=.-.+.++++.+..+...+....-++-+++ +.+... +..
T Consensus 141 ~~~~~~~~~~~~~lt~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~P-----D~s~l~-~~~ 214 (439)
T COG0733 141 PGLAVIFHLLFLVLTALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKP-----DFSKLT-DPK 214 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcC-----CHHHcC-chh
Confidence 4444444466777777788888888 778888877777766666666655432221111111111 001111 112
Q ss_pred HHHHHHHhhhhhh-hccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHH
Q 011741 195 AVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 273 (478)
Q Consensus 195 ~~~~~~~~~~~af-~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~ 273 (478)
.+..+..-++|+. .|+...-.+++-.++ |.|+++.-....+.-..+-++..+.+.-.+ .....+.+ +.|
T Consensus 215 v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~---f~~g~~~~---~Gp--- 284 (439)
T COG0733 215 VWLAALGQAFFSLSLGFGIMITYSSYLSK-KSDLVSSALSIVLLNTLISLLAGLVIFPAL---FSFGADAS---QGP--- 284 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHH---HHhccCCC---CCC---
Confidence 3555555566665 678888888888877 788888877766666655555444433332 11111111 223
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCC
Q 011741 274 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDK 323 (478)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg 323 (478)
......+.+.|..-+.+.++.++.+.+..-+.+++..+.-..+-+.-.|+
T Consensus 285 gL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~ 334 (439)
T COG0733 285 GLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDK 334 (439)
T ss_pred eeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333322255666666665555555555555444444433333
No 71
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=97.46 E-value=0.028 Score=56.51 Aligned_cols=231 Identities=9% Similarity=-0.051 Sum_probs=115.6
Q ss_pred cchhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHH
Q 011741 7 KNSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMG 86 (478)
Q Consensus 7 ~~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a 86 (478)
+-++++++...|-...++...+.++....-.+...+.++..++. ..-.-.++.+|+. |+......-=+...+ +.
T Consensus 24 Il~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~~-g~~~~~v~~~~~~~g----~i 97 (411)
T KOG1305|consen 24 ILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGKL-GKVDAAVAVKCFGVG----MV 97 (411)
T ss_pred HHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCCC-ceeeehhhHHhhhcc----ce
Confidence 34567888888866445555566666777777778888888766 4445556666653 333322211111111 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhee
Q 011741 87 TQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 166 (478)
.+....++.+..+.....++++...+....+.. +-+....++..+.+...--.-|.....+....+.++...+.....
T Consensus 98 ~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~--ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~ 175 (411)
T KOG1305|consen 98 SYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFL--ILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQ 175 (411)
T ss_pred EEEEEEccccchhhhhcccccccccccccceeE--eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222232222222111111100000011110 112222233333333211123334444444443333333333222
Q ss_pred cccccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcc-cccchHHHHHHHHHHHHHHHH
Q 011741 167 ALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGAD-KTGPIAILSSIGIISIFGWAL 245 (478)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~-k~ip~ai~~~~~~~~~~y~l~ 245 (478)
.+. ...+. ... .+. +. ...+...++...+++|.-.+.....-.|+|||. |++-+....+...+..+|...
T Consensus 176 ~~~-~~~~~--~~~---~~~-~~--~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~ 246 (411)
T KOG1305|consen 176 GPC-ALGRL--SYL---VPN-LS--SFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLT 246 (411)
T ss_pred ccc-ccCCc--ccc---cCC-cc--hhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 00000 000 011 11 012578888999999999999999999999987 578888888999999999998
Q ss_pred HHHHHhhcc
Q 011741 246 ILALCFSIQ 254 (478)
Q Consensus 246 ~~~~~~~~~ 254 (478)
...-+...+
T Consensus 247 g~~GYL~Fg 255 (411)
T KOG1305|consen 247 GLFGYLTFG 255 (411)
T ss_pred HHhhhheec
Confidence 888777774
No 72
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.22 E-value=0.11 Score=53.47 Aligned_cols=204 Identities=10% Similarity=-0.051 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 011741 80 GLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVI 159 (478)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~ 159 (478)
+.+++++.+.....|-+.... ++.+ .....+++++++....+.-+|.+..++.-.-...+=++.+..+
T Consensus 105 DgviTPAISVlSAvEGl~v~~---------p~~~---~~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~ 172 (534)
T PF02705_consen 105 DGVITPAISVLSAVEGLEVAT---------PSLE---PYVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVL 172 (534)
T ss_pred ceeecchHHHHHHhhhhhccC---------CCCc---ceehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 355556655555555554321 2222 2236678889999999999999999888777777766666666
Q ss_pred hhhhheeccccc---ccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHH
Q 011741 160 IIMLPLVALTTQ---SASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIG 236 (478)
Q Consensus 160 ~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~ 236 (478)
.+.-+...++.- ++.+..+-+ ...++. -+..+..++.+.+|-|+.-.--+ +-.+|.+.++-..-+.
T Consensus 173 G~~~I~~~p~Vl~A~nP~yai~f~----~~~~~~-----~~~~LG~V~L~~TGaEALyADmG--Hfg~~~Ir~aw~~~V~ 241 (534)
T PF02705_consen 173 GLYNIIQHPEVLKALNPYYAIRFF----IRNGWI-----GFFVLGAVFLCVTGAEALYADMG--HFGRKPIRIAWFFLVF 241 (534)
T ss_pred HHHHHhhCHHHHHHhCHHHHHHHH----HHcCCc-----hhhhcchHHHHHhhHHHHHhhhc--cccchhhhhhHHHHHH
Confidence 555554322110 111111111 111221 12334455678899999743222 2234555444443222
Q ss_pred HHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 011741 237 IISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 316 (478)
Q Consensus 237 ~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 316 (478)
-+.++--+.+-+. +..+++ + ..+++.....+ +..+.+.+++.++..-+..+...++=-+.
T Consensus 242 PaL~LnY~GQgA~---------ll~~p~-~-----~~npFf~~~P~-----~~~~p~~ilAtlAtIIASQA~Isg~FSl~ 301 (534)
T PF02705_consen 242 PALLLNYFGQGAL---------LLSHPE-A-----VSNPFFLLIPE-----WLLWPMVILATLATIIASQAVISGAFSLT 301 (534)
T ss_pred HHHHHHHccHHHH---------HHcCcc-h-----hhhHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222 222221 0 22446555533 24455455555555555555666666677
Q ss_pred HHhcCCCCCc
Q 011741 317 YALSRDKGIP 326 (478)
Q Consensus 317 ~~~a~dg~lP 326 (478)
.+.-+-|.+|
T Consensus 302 ~Qai~Lg~~P 311 (534)
T PF02705_consen 302 RQAIQLGYFP 311 (534)
T ss_pred HHHHHhCCCC
Confidence 7777889999
No 73
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.13 E-value=0.39 Score=48.99 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-CCC-chhhHHHhhcCCC
Q 011741 26 WVVVSFFTWFVGLAMAEICSSFP-TTG-SLYFWAAHLASPK 64 (478)
Q Consensus 26 ~li~~~~~~~~a~~~~el~~~~p-~~G-G~y~~~~~~~g~~ 64 (478)
.+-..+++.+....+.|++.+.= .+| |...-.++-+||+
T Consensus 67 LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~ 107 (439)
T PRK00701 67 LLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRP 107 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCch
Confidence 34455566677778889988886 344 6777777775554
No 74
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.06 E-value=0.037 Score=56.12 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=57.6
Q ss_pred chhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHH
Q 011741 8 NSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGT 87 (478)
Q Consensus 8 ~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~ 87 (478)
+..+.+.+ .|.... |..+...+......+.++.--++ .+.-...+|.++-+|++. ....+.+....+......+.
T Consensus 29 G~~g~~y~-~G~~~~-~~~~~~~~~~~~~~~~~~~~~r~-~~~~T~~e~~~~Ryg~~~--~~~~~~~i~~i~~~~~~~~~ 103 (406)
T PF00474_consen 29 GFPGFAYS-YGISGL-WYAIGYAIGFLLFALFFAPRLRR-SGAVTIPEYLEKRYGSKA--LLRILAAIIIIVFMIPYLAA 103 (406)
T ss_dssp HHHHHHHH-T-GGGG-HHHHHHHHHHHHHHHHTHHHHHH-TT--SHHHHHHHHT-HHH---HHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHhhc-CCccee-eeccccchhHHHHHHHHHHhhcc-cchhhhhhhhhhhcCCch--hhhhhcccccchhhhhhhhc
Confidence 34445554 355523 33233333334444444443332 244578888888877763 01233333333444444555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011741 88 QAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLP 164 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~ 164 (478)
.....+..++.+++. +.+...++ ...++......-|.|...+.+.+-.++.++..+++.+..+
T Consensus 104 q~~~~~~~~~~~~gi------------~~~~~~~i--~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~~~~~~~~~~ 166 (406)
T PF00474_consen 104 QLVGGGALLSVLFGI------------PYNTAILI--VGVIVIIYTFFGGLRAVAWTDFIQGVIMIIGAIVVLIFVL 166 (406)
T ss_dssp HHHHHHHHHHHHTT--------------HHHHHHH--HHHHHHHTTCTT------SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhccch------------hhhHHHHH--HHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHhhhccc
Confidence 555555666555321 22222222 2222223444447787776666666655555444444443
No 75
>PRK12488 acetate permease; Provisional
Probab=96.86 E-value=0.82 Score=48.28 Aligned_cols=96 Identities=7% Similarity=0.013 Sum_probs=50.2
Q ss_pred chhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHH
Q 011741 52 SLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWA 131 (478)
Q Consensus 52 G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 131 (478)
..++|.++=++.+ ....+.+....+.............+..++.+++. +.+...++..++ ...
T Consensus 131 T~~d~l~~Rf~s~---~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi------------~~~~~iii~~~i--~~~ 193 (549)
T PRK12488 131 TFADVVSYRLAQG---PVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI------------SYLYAVVIVGAL--MVL 193 (549)
T ss_pred chHHHHHHHcCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHH--HHH
Confidence 4555555555533 24555555555554555555555555566655422 333333332222 223
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011741 132 VLNTFALEVIAFIDIISMWWQVAGGLVIIIMLP 164 (478)
Q Consensus 132 ~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~ 164 (478)
..-.=|.|...+.+.+=..+.++..++..+..+
T Consensus 194 Yt~~GGm~av~~td~iQ~~im~~~~i~~~~~~l 226 (549)
T PRK12488 194 YVTFGGMLATTWVQIIKAVLLLSGTSFMAFMVL 226 (549)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333558888888777777666665555444333
No 76
>PRK11017 codB cytosine permease; Provisional
Probab=96.85 E-value=0.65 Score=47.00 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=79.3
Q ss_pred HhhhcCCCC-chhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHH
Q 011741 43 ICSSFPTTG-SLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLC 121 (478)
Q Consensus 43 l~~~~p~~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (478)
.+..=++.| +.....|..||.+ -+.+.+....+..+...+......+..+.... +. +.+.
T Consensus 62 ~~~~G~k~G~~~~v~sR~~FG~~----Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~----------~~--~~~~--- 122 (404)
T PRK11017 62 LGYIGAKTGLSTHLLARFSFGEK----GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT----------GL--DINL--- 122 (404)
T ss_pred HHHHHhccCcCHHHHHHHHhchh----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----------CC--CHHH---
Confidence 333345555 5666788887775 23344434444443344444444444444432 11 1111
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccceeeccCCCCCCCCchhHHHHHHH
Q 011741 122 MYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFL 201 (478)
Q Consensus 122 i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (478)
..+++.++.......|.|...+++++...+..+..+...+......++ ..+ ..+. .+.+. .++..++.
T Consensus 123 ~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g--~~~--~~~~----~~~~~----~~~~~a~~ 190 (404)
T PRK11017 123 LIVLSGLLMTVTAYFGISALTILSRIAVPAIALLGGYSVWLAVNDVGG--LDG--LKAI----VPAEP----LDFSAALT 190 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhh--hhcC----CCCCc----ccHHHHHH
Confidence 122344555666678888888888887776665444433322221111 001 1111 11111 12333332
Q ss_pred hhh-hhhhccchhhhhhhhhcCcccccchHHHHHHHHHHH
Q 011741 202 VSQ-YSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISI 240 (478)
Q Consensus 202 ~~~-~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~ 240 (478)
... +-..+.-..+.++++.|++++. -.+...+..+...
T Consensus 191 ~~~g~~~~~~~~~~DysRy~k~~~~~-~~~~~lg~~i~~~ 229 (404)
T PRK11017 191 LVVGSFISGGTLTADFVRFGRSAKIA-VLATMVAFFLGNS 229 (404)
T ss_pred HHHHHHHHhHhcCCChHhhccCccce-eehhHHHHHHHHH
Confidence 222 1124455578888888886544 3555555444333
No 77
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.83 E-value=0.86 Score=48.12 Aligned_cols=92 Identities=9% Similarity=-0.047 Sum_probs=44.6
Q ss_pred hhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHH
Q 011741 53 LYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAV 132 (478)
Q Consensus 53 ~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (478)
..+|.++=++.| ....+.+....+.............+..++.+++. +.+...++...+ ....
T Consensus 132 ~~d~l~~Rf~s~---~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi------------~~~~~iii~~~i--~~~Y 194 (549)
T TIGR02711 132 FADVASYRLKQR---PIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL------------NYHVAVVLVGIL--MVMY 194 (549)
T ss_pred HHHHHHHHcCCc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH--HHHH
Confidence 444444444432 24455554444444444444444555555555421 333333332222 2233
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 011741 133 LNTFALEVIAFIDIISMWWQVAGGLVIII 161 (478)
Q Consensus 133 l~~~g~~~~~~~~~~~~~~~i~~~~~~~i 161 (478)
.-.-|.|...+.+.+=.++.++..++..+
T Consensus 195 t~~GGm~av~~td~iQ~~im~~g~i~~~~ 223 (549)
T TIGR02711 195 VLFGGMLATTWVQIIKAVLLLFGATFMAF 223 (549)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33558888877777776666655544433
No 78
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.61 E-value=1.1 Score=46.50 Aligned_cols=97 Identities=13% Similarity=-0.002 Sum_probs=48.0
Q ss_pred CchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHH
Q 011741 51 GSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIW 130 (478)
Q Consensus 51 GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 130 (478)
-..++|.++=+|++- +....+.+-...+......+......+..++.+++. +.+...++ ...+..
T Consensus 104 ~T~~e~l~~Ryg~~~-~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi------------~~~~~iii--~~~i~~ 168 (487)
T TIGR02121 104 ITLPDFFENRFNDKS-RLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL------------DYKTGLLI--GALIIV 168 (487)
T ss_pred ccHHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------cHHHHHHH--HHHHHH
Confidence 357888888877541 223333333333333333444444455555554321 33333333 222344
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 011741 131 AVLNTFALEVIAFIDIISMWWQVAGGLVIIIM 162 (478)
Q Consensus 131 ~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~ 162 (478)
.....-|.|...+.+.+=..+.++..+.+.+.
T Consensus 169 ~Yt~~GGl~av~~TD~iQ~~i~~~~~~~v~~~ 200 (487)
T TIGR02121 169 IYTFFGGFLAVSWTDFVQGLLMFFALVLVPIV 200 (487)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677777776666666555544444333
No 79
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.60 E-value=0.94 Score=45.51 Aligned_cols=177 Identities=14% Similarity=0.039 Sum_probs=95.2
Q ss_pred hhhcCCCC-chhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHH
Q 011741 44 CSSFPTTG-SLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCM 122 (478)
Q Consensus 44 ~~~~p~~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 122 (478)
+..=|+.| ......|..||++ -+.+......+..+...+..+...++.+..+.+... +.. ++...
T Consensus 50 ~~~G~~~Gl~~~v~sR~~FG~~----Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~------~~~-~~~~~--- 115 (386)
T TIGR02358 50 GVIGADTGLSAMGSLKLSLGSK----GSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF------GEE-SPMLW--- 115 (386)
T ss_pred HHhhcccCcCHHHHHHHHHccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCC-chHHH---
Confidence 33335555 6777888887876 344555566666666677788888888888775421 111 11111
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccceeeccCCCCCCCCchhHHHHHHHh
Q 011741 123 YIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLV 202 (478)
Q Consensus 123 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (478)
...+.++.......|.|...+++++...+..+..+...+....+.+ ... ..+ .+.+. ++..+...
T Consensus 116 ~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~--~~~------~~~~~-----s~~~~~~~ 180 (386)
T TIGR02358 116 ILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKAD--LSE--LWN------RAGDM-----SFAVAVEL 180 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhh--hcC------CCCCc-----cHHHHHHH
Confidence 1223335666667899999999999888777666555443332211 100 111 11111 12222211
Q ss_pred hhhh-hhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHH
Q 011741 203 SQYS-LYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALC 250 (478)
Q Consensus 203 ~~~a-f~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~ 250 (478)
..-. -.+....+.+++..|+| |+.-++..++..+...+..+......
T Consensus 181 ~~~~~~swa~~~~DysRy~k~~-~~~~~~~~~G~~i~~~~~~~~G~~~~ 228 (386)
T TIGR02358 181 VIAMPLSWLPLIADYTRFARNP-RHVFLGTVLGYFIGSCWMYFLGLAVT 228 (386)
T ss_pred HHHHHHHHHHHccchhhhcCCC-cceehHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12222367888888875 44556766666665555444444333
No 80
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=96.59 E-value=1.2 Score=46.42 Aligned_cols=137 Identities=9% Similarity=-0.076 Sum_probs=73.7
Q ss_pred chhhhhhhccCcchhHHHHH---HHHHHHHHHHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHH
Q 011741 8 NSEEKCLLYAGPASLVWGWV---VVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAG 84 (478)
Q Consensus 8 ~~~~~~~~~~G~~~~~l~~l---i~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~ 84 (478)
..++.+.+.+-.. .++... ...+.....+--..+++ ..++.=...+|.++-||+ +....+++....+.....
T Consensus 61 G~~g~ay~~G~~~-~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~Rf~s---~~lr~l~ali~iv~~i~y 135 (493)
T COG0591 61 GLPGLAYASGLSG-LWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEARFGS---KILRILSALIIIVFFIPY 135 (493)
T ss_pred cchHHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHHHcCC---hHHHHHHHHHHHHHHHHH
Confidence 4445555543333 333322 23333444444555555 444556788888888664 346777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 011741 85 MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVII 160 (478)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~ 160 (478)
.+..-...+..++...+ .+........+..+++....--++++..+..+|.....+.+..+....
T Consensus 136 ia~ql~~~~~~~~~~~g-----------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im~i~~~~~~i~~ 200 (493)
T COG0591 136 IALQLVAGGLLLSLLFG-----------ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQGLIMLIALIVIPILV 200 (493)
T ss_pred HHHHHHHHHHHhhhhcC-----------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777755432 122222333344444444444445555555566665555554444433
No 81
>PRK09395 actP acetate permease; Provisional
Probab=96.53 E-value=1.4 Score=46.63 Aligned_cols=101 Identities=9% Similarity=0.002 Sum_probs=50.0
Q ss_pred hhhcCCCC--chhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHH
Q 011741 44 CSSFPTTG--SLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLC 121 (478)
Q Consensus 44 ~~~~p~~G--G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (478)
+.++.+.| ..++|.++=+|++ ....+.+....+.............+..++.+++. +.+...+
T Consensus 123 ~~~~r~~g~~T~~d~l~~Rygs~---~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi------------~~~~~il 187 (551)
T PRK09395 123 AERLRNLGKYTFADVASYRLKQG---PIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL------------NYHVAVV 187 (551)
T ss_pred HHHHhhCCCccHHHHHHHHcCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CHHHHHH
Confidence 44454433 3444444554432 24555555555554444455555555555555321 3333333
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 011741 122 MYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIII 161 (478)
Q Consensus 122 i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i 161 (478)
+.. .+.......=|.|...+.+.+=.++.++..+++.+
T Consensus 188 i~~--~i~~iYt~~GGm~av~~TD~iQ~iim~~g~ii~~~ 225 (551)
T PRK09395 188 LVG--VLMMVYVLFGGMLATTWVQIIKAVLLLSGATFMAF 225 (551)
T ss_pred HHH--HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 22333444458888777777666665555444433
No 82
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=96.51 E-value=1.2 Score=45.79 Aligned_cols=102 Identities=14% Similarity=0.027 Sum_probs=61.8
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHH
Q 011741 274 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI 353 (478)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~ 353 (478)
+.....++.. | .+.++....++..+....+...+.+..+..++.+| -+ +| ..+.+..|-...-.+
T Consensus 379 ~a~~~~l~~l---P-~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-~~--------ep--~~~~ri~W~~~~~~~ 443 (485)
T PF02028_consen 379 AALFAFLEQL---P-LSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-DE--------EP--PRWLRIFWGLIIGAL 443 (485)
T ss_dssp HHHHHHHHTS---T-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-TS--------SS---HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHh---h-HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-CC--------CC--chHHHHHHHHHHHHH
Confidence 4444555432 3 66777888888888888899999999999998776 11 22 234444444443333
Q ss_pred HHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011741 354 ILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMV 390 (478)
Q Consensus 354 i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 390 (478)
...++..+..+..+.+..++.+...+...+...+..+
T Consensus 444 a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k 480 (485)
T PF02028_consen 444 AIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIK 480 (485)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445667777777777666665554444443
No 83
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.28 E-value=1.6 Score=44.49 Aligned_cols=181 Identities=10% Similarity=-0.054 Sum_probs=88.0
Q ss_pred hHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc---cCchhHHHHHHHHHHHH-H
Q 011741 55 FWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGY---FAPKWLFLCMYIGLTII-W 130 (478)
Q Consensus 55 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~-~ 130 (478)
.-.|..||-.-.++... .-.+.-+...+..++..+..+..++....+...-++. .......-+++..+.++ .
T Consensus 107 v~~RaSFGi~Ga~~p~l----~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~ 182 (497)
T COG1953 107 VLSRASFGIYGANFPAL----IRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQ 182 (497)
T ss_pred HHHHHHHhhhhhhHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHH
Confidence 45677766643232222 2233333334566666666666665543211000110 00111223344343333 3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhh--h
Q 011741 131 AVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSL--Y 208 (478)
Q Consensus 131 ~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af--~ 208 (478)
..+-..|.+...|++.....++....+.+.+....+.++.......... ..++. ...+.++.++... ..+ +
T Consensus 183 ~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~-----~~~~~-~~~w~~~~~~~~~-v~~~At 255 (497)
T COG1953 183 LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAG-----TVSGS-NSSWAFLAGIAAW-VGFWAT 255 (497)
T ss_pred HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCC-----CCCcc-hhHHHHHHHHHHH-HHHHHH
Confidence 4445569999999999999999988888888777665432211111111 11111 1122344333222 122 3
Q ss_pred ccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHH
Q 011741 209 GYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALIL 247 (478)
Q Consensus 209 G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~ 247 (478)
..-..+..+++.|+|| +.-++-.+++-+...+.-+..+
T Consensus 256 l~lN~~DFsRfa~s~~-~~~~gq~~gLPv~~~l~~ligv 293 (497)
T COG1953 256 LALNIPDFTRFAKSQK-AQIWGQLVGLPVNFALFSLIGV 293 (497)
T ss_pred HhcCCchhhcccCChh-hhhhccchhhhHHHHHHHHHHh
Confidence 3334677788888854 4345555555554444443333
No 84
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=96.09 E-value=2 Score=44.01 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhcCCCC-chhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011741 34 WFVGLAMAEICSSFPTTG-SLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILL 102 (478)
Q Consensus 34 ~~~a~~~~el~~~~p~~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 102 (478)
+..+...+-.+..=|+.| ......|..||.+ -+.+.....++..+...+..+...++.+..++..
T Consensus 58 ~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~----Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~ 123 (442)
T TIGR00800 58 LLGGIFVALNSRAGAKYGLPFPVLSRASFGIY----GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDS 123 (442)
T ss_pred HHHHHHHHHhhhhHHHhCCCcchhhhhhhhhh----HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333344335555 5677788887765 3455555666666666778888888877777655
No 85
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=95.97 E-value=2.1 Score=43.16 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcC-CCC-chhhHHHhhcCCC
Q 011741 22 LVWGWVVVSFFTWFVGLAMAEICSSFP-TTG-SLYFWAAHLASPK 64 (478)
Q Consensus 22 ~~l~~li~~~~~~~~a~~~~el~~~~p-~~G-G~y~~~~~~~g~~ 64 (478)
.-+..+...+...+..+..-|++.+.= .+| |.-.=.++-++|+
T Consensus 46 ~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~ 90 (416)
T COG1914 46 YGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPG 90 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccch
Confidence 344566677788888888999998885 333 3444455554444
No 86
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=95.89 E-value=0.35 Score=51.32 Aligned_cols=177 Identities=12% Similarity=0.004 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhee-cccc-c--ccccccceeeccCCCCCCCCch
Q 011741 118 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV-ALTT-Q--SASYVFTHFEMSPEATGISSKP 193 (478)
Q Consensus 118 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~-~~~~-~--~~~~~~~~~~~~~~~~~~~~~~ 193 (478)
....+++++++....+.-+|....++.-.-++.+=++.+..+.+..+.. .++. + ++.+..+-+. .++..+|
T Consensus 167 ~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~-~~~~~~~---- 241 (688)
T TIGR00794 167 WVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFI-EYGTVGW---- 241 (688)
T ss_pred eehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHH-HCCCcee----
Confidence 3456788899999999999999888888877777777666666666543 2211 0 1111111110 0111222
Q ss_pred hHHHHHHHhhhhhhhccchh-hhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccH
Q 011741 194 YAVILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 272 (478)
Q Consensus 194 ~~~~~~~~~~~~af~G~e~~-~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~ 272 (478)
..+..++.+.+|.|+. +.++. -.+|.+.++-..-+.-+.++--+.+-+.... +++.. .+|
T Consensus 242 ----~~LG~V~L~iTGaEALyADmGH---Fg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~--~p~~~--------~Np-- 302 (688)
T TIGR00794 242 ----VSLGGVVLSITGVEAMFADLGH---FGKLPIQLAWFTFVYPSLILCYIGQAAYLSK--HPEAI--------KNP-- 302 (688)
T ss_pred ----eeccchhheeccHhhhhcccCC---CCcccceeehHHHHHHHHHHHHcchHHHHhc--Ccchh--------cCc--
Confidence 2334455788999996 33332 2344554444333332222222222222221 11111 233
Q ss_pred HHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 273 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 273 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
+..... ++..+.+.+++.+++.-+..+.+.++=.+..+.-+-|.+|
T Consensus 303 ---Ff~~~P-----~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~P 348 (688)
T TIGR00794 303 ---FFLSIP-----DWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFP 348 (688)
T ss_pred ---HHHhCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 555443 2244555555555555555555566666667777889999
No 87
>PRK09950 putative transporter; Provisional
Probab=95.72 E-value=3.1 Score=43.11 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHcccccc-HHHHH
Q 011741 289 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKV-NVVFT 367 (478)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~-~~~~~ 367 (478)
...+...+.++.++....+..-+.+-.+-.++.+|.-+ +.||++ ..+..|-...-.+...++..+. .+..+
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~------~~~P~~--~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ 471 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLRE------GDDPDR--GLRLFWCVVITLIPLSILFTGASLDTMK 471 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCC------CCCCCc--chhHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 66777778888888888888888999998888776433 112221 2233333222222222222332 45566
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011741 368 AITSICTIGWVGGYAVPIFAR 388 (478)
Q Consensus 368 ~l~~~~~~~~~~~~~l~~~~~ 388 (478)
....++.+...+...+...+.
T Consensus 472 ~~~ii~alP~~~i~~l~~~s~ 492 (506)
T PRK09950 472 TTVVLTALPFLVILLIKVYGF 492 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555444444333
No 88
>PLN00149 potassium transporter; Provisional
Probab=95.59 E-value=0.56 Score=50.34 Aligned_cols=180 Identities=12% Similarity=-0.006 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec-ccc---cccccccceeeccCCCCCCCCch
Q 011741 118 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA-LTT---QSASYVFTHFEMSPEATGISSKP 193 (478)
Q Consensus 118 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~ 193 (478)
....+++++++....+.-+|....++.-.-++.+=++.+..+.+.-++.. ++. -++.+.++-+. .+...+|.
T Consensus 197 vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~-~~~~~g~~--- 272 (779)
T PLN00149 197 VEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLK-KTQRGGWM--- 272 (779)
T ss_pred eehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHH-HCCCceeE---
Confidence 33568889999999999999998888877777777666666666555432 111 01111111110 01223342
Q ss_pred hHHHHHHHhhhhhhhccchh-hhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccH
Q 011741 194 YAVILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 272 (478)
Q Consensus 194 ~~~~~~~~~~~~af~G~e~~-~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~ 272 (478)
.+..++.+.+|-|+. +.++. -.+|.+.++-..-+.=+.++--+.+-+..... ++... +- .+|
T Consensus 273 -----~LGgV~L~iTG~EALyADlGH---F~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~--p~~~~-~~----~~p-- 335 (779)
T PLN00149 273 -----SLGGILLCITGSEAMFADLGH---FSQLSIKIAFTSLVYPSLILAYMGQAAYLSKH--HVIES-DY----RIG-- 335 (779)
T ss_pred -----eecchhhcccchhhhhhcccC---CCccceeeeehhhHHHHHHHHhhhHHHHHhcC--cchhc-cc----cCc--
Confidence 233445688999996 33332 33455555444333333333222233322221 11111 10 123
Q ss_pred HHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 273 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 273 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
|.....+ +..+-+.+++.++..-+..+.+.++=.++.+.-+-|.+|
T Consensus 336 ---Fy~~iP~-----~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fP 381 (779)
T PLN00149 336 ---FYVSVPE-----KLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFP 381 (779)
T ss_pred ---HHHhCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5555432 244444555555555555555555556666666789999
No 89
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.59 E-value=0.4 Score=50.09 Aligned_cols=176 Identities=9% Similarity=-0.013 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccccc---ccccccceeeccCCCCCCCCchhH
Q 011741 119 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQ---SASYVFTHFEMSPEATGISSKPYA 195 (478)
Q Consensus 119 ~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 195 (478)
...+++++++....+.-+|....++.-.-.+.+=++.+..+.+..+...++.- ++.+..+-+ ...++.
T Consensus 143 Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~----~~~~~~----- 213 (622)
T PRK10745 143 IVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFF----LEYKTV----- 213 (622)
T ss_pred cHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHH----HhCCCc-----
Confidence 46678899999999999999999988888777777766666666655322110 111111111 001121
Q ss_pred HHHHHHhhhhhhhccchh-hhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHHH
Q 011741 196 VILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 274 (478)
Q Consensus 196 ~~~~~~~~~~af~G~e~~-~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~ 274 (478)
-+..+..++.+.+|-|+. +.++. -.+|.+.++-..-+.=+.++--+.+-+.... +++.. .+|
T Consensus 214 gf~~LG~V~L~vTGaEALYADmGH---FG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~--~p~~~--------~Np---- 276 (622)
T PRK10745 214 SFFALGAVVLAITGVEALYADMGH---FGKFPIRLAWFTVVLPSLVLNYFGQGALLLK--NPEAI--------KNP---- 276 (622)
T ss_pred eEEEecceeeeccchHHHhhccCC---CCccceeeeehhhHHHHHHHHhcchHHHHhc--Cchhh--------cCc----
Confidence 112334455788999986 33332 3345555444433322222222222222211 11111 233
Q ss_pred HHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 275 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
+..... ++..+.+.+++.+++.-+..+.+.++=.+..+.-+-|.+|
T Consensus 277 -Ff~~~P-----~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~P 322 (622)
T PRK10745 277 -FFLLAP-----DWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLP 322 (622)
T ss_pred -HHHhCC-----hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCC
Confidence 545443 2244444555555555555555556666666777889999
No 90
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=95.51 E-value=4.1 Score=43.13 Aligned_cols=102 Identities=5% Similarity=-0.047 Sum_probs=52.4
Q ss_pred HHHHHHHHhhhcCCCCchhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCc
Q 011741 36 VGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAP 115 (478)
Q Consensus 36 ~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (478)
.++.+++.-+++. .-..++|.++-||++. ...+++....+......+......+..++.+.+. +
T Consensus 81 ~~~~~~p~~rr~~-~~T~~e~l~~Rf~s~~---~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi------------~ 144 (552)
T TIGR03648 81 LALLLAPYLRKFG-KYTVPDFIGDRYYSNT---ARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV------------D 144 (552)
T ss_pred HHHHHHHHHHHCC-CccHHHHHHHHhCCCc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------C
Confidence 4455565555553 3478888888877553 3444444444444444444445555555555422 3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 011741 116 KWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAG 155 (478)
Q Consensus 116 ~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~ 155 (478)
.+...++..++ .....-.-|.|...+.+.+=..+.++.
T Consensus 145 ~~~~iii~~~i--~~iYt~~GG~~aV~~TD~iQ~iim~ig 182 (552)
T TIGR03648 145 FETGVFIGMAI--VFFYAVLGGMKGVTWTQVAQYIVLIVA 182 (552)
T ss_pred HHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33433333222 233333457777766655555554443
No 91
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.44 E-value=1.7 Score=42.33 Aligned_cols=303 Identities=13% Similarity=0.128 Sum_probs=140.7
Q ss_pred ccCcchh---HHHHHHHHHHHHHHHH-HHHHHhhhcCC---C-C----chhhHHHhhcCCCcccchHHHHHHHHHHHHHH
Q 011741 16 YAGPASL---VWGWVVVSFFTWFVGL-AMAEICSSFPT---T-G----SLYFWAAHLASPKWGPFASWCCAWLETIGLIA 83 (478)
Q Consensus 16 ~~G~~~~---~l~~li~~~~~~~~a~-~~~el~~~~p~---~-G----G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~ 83 (478)
.+||..+ -+.|++-+.+-.|.++ ++.-+++.+.+ . + -++-+.|. .+++..++.+....+.+..
T Consensus 61 igGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY-----~s~fl~~las~~Lifff~~ 135 (473)
T COG4145 61 IGGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARY-----QSRFLVWLASLSLIFFFVG 135 (473)
T ss_pred cCCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHh-----cchHHHHHHHHHHHHHHHH
Confidence 3566522 2346655555555544 56666655532 1 1 12222222 5667888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 011741 84 GMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIML 163 (478)
Q Consensus 84 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~ 163 (478)
.+...-...+..++..++. |+.. .....+.. +.....+-|-|.......+=..++++..++..+..
T Consensus 136 ~m~~qfiGgarLlE~~~gi--------dY~t---gL~ifa~~---V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~ 201 (473)
T COG4145 136 AMTVQFIGGARLLETALGI--------DYTT---GLLIFAVS---VAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGV 201 (473)
T ss_pred HHHHHHhhHHHHHHHHHCC--------Cchh---hHHHHHHH---HHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776543 3321 11111211 12223334566655444444444444444433333
Q ss_pred heecccccccccccceeec----cCCCCC-CCCchhHHHHH-HHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHH
Q 011741 164 PLVALTTQSASYVFTHFEM----SPEATG-ISSKPYAVILS-FLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGI 237 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~-~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~ 237 (478)
+...++.++.-...++.++ +++..+ ..+ .+... ....++.-.|--......-..|| +|.+-++|+++.++
T Consensus 202 i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~---~Fm~Sfwilv~~gvlglP~t~vr~ia~kD-skaih~gmiigt~v 277 (473)
T COG4145 202 IYAGGGLSNAVETLTTIDPGLVTPQGADDILDP---PFMASFWILVCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIV 277 (473)
T ss_pred HHhccCHHHHHHHHHhCCccccCCCCCcccccc---hHHHHHHHHHHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHH
Confidence 3222221111111122210 011111 111 12221 22333445555545555555688 68899999999999
Q ss_pred HHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHHHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 011741 238 ISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVY 317 (478)
Q Consensus 238 ~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 317 (478)
++++-+.+-.+-...---..|+...+. . +.....+.+.+. ..-++...-..+..++.++.+.-.+..+-
T Consensus 278 i~il~~gmhl~G~~graViPdlt~~D~-----V-ip~lalkvlpp~-----~agifl~apmaAiMSTIds~L~~~sstli 346 (473)
T COG4145 278 IAILMLGMHLAGALGRAVIPDLTVVDL-----V-IPTLALKVLPPF-----AAGIFLAAPMAAIMSTINSQLLQSSSTLI 346 (473)
T ss_pred HHHHHHHHHHhhhhhhhhcCCCCccch-----h-HHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888765543331111100112222221 1 224444444322 44444455555566666666655544332
Q ss_pred HhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHcc
Q 011741 318 ALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP 358 (478)
Q Consensus 318 ~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~ 358 (478)
||=++- .+=...| +++.-......+..+..+..+.
T Consensus 347 ---KdLy~~--~~~~~~~-E~ki~~is~~~t~i~~~l~~i~ 381 (473)
T COG4145 347 ---KDLYLN--VRDKLKN-ERKIKRISMIATLIFGALLLIA 381 (473)
T ss_pred ---HHHHHH--HHHHhhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 2111223 3455555555566555555443
No 92
>PRK10484 putative transporter; Provisional
Probab=95.07 E-value=5.3 Score=41.93 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 011741 289 GAIILLIVIWGSFFFGGLSVTTSAARVV 316 (478)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l 316 (478)
..-++....+.+..++..+.+++.+-.+
T Consensus 328 l~Gl~~a~ilAA~mST~~s~l~s~st~~ 355 (523)
T PRK10484 328 LVGFFAAVLFGAILSTFNGFLNSASTLF 355 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566667777777777777776554
No 93
>PLN00148 potassium transporter; Provisional
Probab=95.05 E-value=0.56 Score=50.32 Aligned_cols=176 Identities=13% Similarity=0.038 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec-ccc---cccccccceeeccCCCCCCCCchh
Q 011741 119 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA-LTT---QSASYVFTHFEMSPEATGISSKPY 194 (478)
Q Consensus 119 ~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 194 (478)
...+++++++..+.+.-+|....+++-.-+..+=++.+..+.+..++.. ++. -++.+..+-+. .++..+|.
T Consensus 197 vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~-~~~~~g~~---- 271 (785)
T PLN00148 197 LVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFR-VTGKDGWI---- 271 (785)
T ss_pred ehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHH-hCCCceEE----
Confidence 4567889999999999999999888887777777766666666665532 111 01111111110 01222342
Q ss_pred HHHHHHHhhhhhhhccchh-hhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHH
Q 011741 195 AVILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 273 (478)
Q Consensus 195 ~~~~~~~~~~~af~G~e~~-~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~ 273 (478)
.+..++.+.+|-|+. +.++. -.+|.+.++-..-+.=+.++--+.+-+...- ++++. .+|
T Consensus 272 ----~LGgV~L~iTGaEALyADlGH---Fg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~--~p~~~--------~np--- 331 (785)
T PLN00148 272 ----SLGGILLSITGTEAMFADLGH---FTAASIRLAFATVIYPCLVVQYMGQAAFLSK--NIPSI--------PNS--- 331 (785)
T ss_pred ----eecchheeccchhhhhhhccC---CCccceEEeeeehHHHHHHHHHcchHHHHhc--Ccccc--------cCc---
Confidence 233445688999996 33333 2344554444332222222222222222221 11111 233
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 274 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
|.....+ +..+-+.+++.++..-+..+.+.++=.++.+.-+-|.+|
T Consensus 332 --Ff~~iP~-----~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fP 377 (785)
T PLN00148 332 --FYDSIPD-----PVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFP 377 (785)
T ss_pred --HHHhCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5555432 244444455555555555555555556666666789999
No 94
>PLN00150 potassium ion transporter family protein; Provisional
Probab=95.00 E-value=0.63 Score=49.91 Aligned_cols=176 Identities=12% Similarity=0.035 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec-ccc---cccccccceeeccCCCCCCCCchh
Q 011741 119 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA-LTT---QSASYVFTHFEMSPEATGISSKPY 194 (478)
Q Consensus 119 ~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 194 (478)
...+++++++.+..+.-+|....++.-.-+..+=++.+..+.+.-+... ++. -++.+..+-+. .++..+|.
T Consensus 214 Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~-~~~~~g~~---- 288 (779)
T PLN00150 214 VTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFI-RNGRQGWE---- 288 (779)
T ss_pred ehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHH-hCCCceEE----
Confidence 4567889999999999999998888877777777766666666655432 111 01111111110 01222332
Q ss_pred HHHHHHHhhhhhhhccchh-hhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccHH
Q 011741 195 AVILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 273 (478)
Q Consensus 195 ~~~~~~~~~~~af~G~e~~-~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~~ 273 (478)
.+..++.+.+|-|+. +.++. -.+|.+.++-..-+.=+.++--+.+-+... .+.+ +..+|
T Consensus 289 ----~LG~V~L~iTGaEALyADlGH---Fg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll---------~~p~-~~~np--- 348 (779)
T PLN00150 289 ----SLGGIVLCMTGTEAMFADLGH---FTVKSMQIAFTSLVYPCLLLTYLGQAAYLV---------KHME-DVNDP--- 348 (779)
T ss_pred ----EecceeeeecchhhhhccccC---CCccceeeeehhhHHHHHHHHHcchHHHHh---------cCcc-cccCc---
Confidence 233445688999996 33332 234555444433332222222222222221 1111 11233
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 274 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
|.....+ +..+-+.+++.+++.-+..+.+.++=.++.+.-+-|.+|
T Consensus 349 --Ff~~iP~-----~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fP 394 (779)
T PLN00150 349 --FYRSLPK-----PIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFP 394 (779)
T ss_pred --HHHhCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5555432 244444455555555555555555556666666789999
No 95
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.97 E-value=0.51 Score=49.52 Aligned_cols=176 Identities=13% Similarity=0.101 Sum_probs=82.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhh-hcc
Q 011741 132 VLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSL-YGY 210 (478)
Q Consensus 132 ~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af-~G~ 210 (478)
....+|+|..+|+......+-.+.++++.+.++...+..+.-++-+++ +-+.. .+...+..++.-++|+. .|+
T Consensus 193 ~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~p-----d~~~l-~~~~vW~~A~~Q~ffsl~ig~ 266 (523)
T PF00209_consen 193 FGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTP-----DWSKL-LDPKVWIAALGQVFFSLSIGF 266 (523)
T ss_dssp TTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB------TTGT-TSHHHHHHHHHHHHHHTTTTS
T ss_pred HheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecC-----Ccchh-hHHHHHHHHHHHHhhccCCCc
Confidence 334579999998887776655555555444444322111111111111 11111 11234556667777776 678
Q ss_pred chhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhcc--------ChhhhhcCCCccCCCccHHHHHHHHhcc
Q 011741 211 DSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ--------DFSYLYDKSNETAGAFVPAQILYDAFHG 282 (478)
Q Consensus 211 e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~--------~~~~l~~~~~~~~g~p~~~~~~~~~~~~ 282 (478)
-....+++-.|+ ++|++|........-....++..+.+...++ +.+++.++ .| ........+
T Consensus 267 G~~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~------g~---~L~Fi~~P~ 336 (523)
T PF00209_consen 267 GIMITYGSYNKF-KNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPES------GP---GLAFIVLPE 336 (523)
T ss_dssp SHHHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-------CH---HHHHTHHHH
T ss_pred ceEEEEcCcCCC-CccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCc------CC---CchHHHHHH
Confidence 888888888777 6778886665555555444443333322220 11222211 12 332333333
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCC
Q 011741 283 RYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDK 323 (478)
Q Consensus 283 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg 323 (478)
.+..-..+.+..++.....+....+...+.-..+-+.-.|+
T Consensus 337 ~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~ 377 (523)
T PF00209_consen 337 AFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDE 377 (523)
T ss_dssp HHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeec
Confidence 33322245555555555555555555555444444444444
No 96
>PLN00151 potassium transporter; Provisional
Probab=94.85 E-value=0.59 Score=50.27 Aligned_cols=177 Identities=10% Similarity=0.014 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheec-ccc---cccccccceeeccCCCCCCCCch
Q 011741 118 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA-LTT---QSASYVFTHFEMSPEATGISSKP 193 (478)
Q Consensus 118 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~ 193 (478)
....+++++++.++.+.-+|....++.-.-+..+=++.+..+.+.-++.. ++. -++.+..+-+. .+...+|.
T Consensus 273 ~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~-~~~~~gw~--- 348 (852)
T PLN00151 273 AVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFK-RNSTKAWS--- 348 (852)
T ss_pred eehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHH-hCCCceEE---
Confidence 34568889999999999999999888887777777766666666665532 111 01111111110 01222342
Q ss_pred hHHHHHHHhhhhhhhccchh-hhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCccCCCccH
Q 011741 194 YAVILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 272 (478)
Q Consensus 194 ~~~~~~~~~~~~af~G~e~~-~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~l~~~~~~~~g~p~~ 272 (478)
.+..++.+.+|.|+. +.++. -.+|.|.++-..-+.=+.++--+.+-+..... +++ ..+|
T Consensus 349 -----~LGgVvLciTGaEALfADLGH---Fg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~--p~~--------~~np-- 408 (852)
T PLN00151 349 -----ALGGCVLCATGSEAMFADLGY---FSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKN--PDS--------AEQI-- 408 (852)
T ss_pred -----EecceeeeeccchhhhcccCC---CCccceeeeehhhHHHHHHHHHcchHHHHhcC--ccc--------ccCc--
Confidence 233345688999996 33332 23455554443333323222222222222211 111 1233
Q ss_pred HHHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 273 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 273 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
|.....+. ..+-+.+++.++..-+..+.+.++=.++.+.-+-|.+|
T Consensus 409 ---Fy~svP~~-----~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fP 454 (852)
T PLN00151 409 ---FFSSVPSS-----LFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFP 454 (852)
T ss_pred ---HHHhCCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 55554322 44444444444545455555555555666666778999
No 97
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=94.81 E-value=5.5 Score=40.76 Aligned_cols=123 Identities=12% Similarity=0.119 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhhcCCCC-chhhHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCC
Q 011741 33 TWFVGLAMAEICSSFPTTG-SLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGT-NKDG 110 (478)
Q Consensus 33 ~~~~a~~~~el~~~~p~~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~ 110 (478)
.+......+-.+..=|+.| ......|..||.+ -+.+......+..+...+......++.+..+.+...+. ...+
T Consensus 52 ~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~----Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~ 127 (440)
T PF02133_consen 52 NLLGAILVALMGIIGPRTGLPTMVLSRASFGYR----GSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIG 127 (440)
T ss_dssp HHHHHHHHHHHTHHHHCC---HHHHTTTTS-TT----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH
T ss_pred HHHHHHHHHHhcccccccCCCchhcchhccCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhh
Confidence 3333333344444446666 5677777787765 34455555556566666777888888888877542100 0000
Q ss_pred -CccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 011741 111 -GYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVI 159 (478)
Q Consensus 111 -~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~ 159 (478)
......+...+..++.-++.......|.|...+++.+...+..+..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~ 177 (440)
T PF02133_consen 128 NAIIGIALPLWVCFFIFWLIQTLFAIYGMKALRRLAVIAAPILLVVFIGM 177 (440)
T ss_dssp -----------HHHHHHHHHHHHHHCTHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHHhHHhhhhHHHHhhhhhe
Confidence 0000011111222233344555677888888888887766655443333
No 98
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=93.14 E-value=13 Score=38.92 Aligned_cols=31 Identities=19% Similarity=0.005 Sum_probs=21.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 011741 286 NSTGAIILLIVIWGSFFFGGLSVTTSAARVV 316 (478)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 316 (478)
+++..-++....+.+..++..+.+++.+-.+
T Consensus 323 p~~l~gl~~a~ilAA~mST~~s~l~a~ss~~ 353 (502)
T PRK15419 323 NPWIAGILLSAILAAVMSTLSCQLLVCSSAI 353 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666677777778888888887776543
No 99
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=92.41 E-value=0.44 Score=32.37 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=38.7
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHhhhccccee
Q 011741 401 FYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKW 463 (478)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (478)
||.| +.|.++++++...++++.-.. ..+++.++++.+++.++|+.|.+||
T Consensus 1 F~vP-~vP~~P~~si~~ni~Lm~~L~------------~~twirf~iWl~iGl~iYf~YG~~h 50 (51)
T PF13906_consen 1 FKVP-LVPFLPALSILINIYLMAQLS------------ALTWIRFGIWLAIGLVIYFGYGIRH 50 (51)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhh------------HhHHHHHHHHHHHHHHHHHheeeec
Confidence 5667 888888888888887754331 2267899999999999999988775
No 100
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=92.27 E-value=16 Score=37.94 Aligned_cols=92 Identities=7% Similarity=-0.113 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHH
Q 011741 289 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTA 368 (478)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~ 368 (478)
...+.....++.++....+...+.+-.+-.++.+|.-+ +.||+ ...+..|-...-.+...++..+..+..+.
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~------~~~p~--~~~ri~W~v~ig~ia~~Ll~~GGl~~lQt 474 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRD------GEEPP--LLVRIGWSILVGIIGIVLLALGGLKPIQT 474 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCC------CCCCC--cchhhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 56666777777777778888888888998888776433 11222 22233333222222222222333455566
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011741 369 ITSICTIGWVGGYAVPIFAR 388 (478)
Q Consensus 369 l~~~~~~~~~~~~~l~~~~~ 388 (478)
...+..+...+...+...+.
T Consensus 475 ~sii~alPf~~i~~l~~~sl 494 (504)
T PRK03356 475 AIIAGGCPLFFVNIMVTLSF 494 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66665555555444443333
No 101
>PRK09928 choline transport protein BetT; Provisional
Probab=92.06 E-value=20 Score=38.54 Aligned_cols=89 Identities=9% Similarity=-0.111 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHccccccHHHHHH
Q 011741 289 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTA 368 (478)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~~~~~~~ 368 (478)
+..+...+.++.++....+..-+.+-.+-.++..|.-| +- + .|+..-=.+++++ ++++..+++ .+..+..+.
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~--~~--~-pp~~~RifW~v~i-g~la~~LL~--~GGL~aLQt 478 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDI--NS--D-APNWLRVFWSVAI-GLLTLGMLM--TNGISALQN 478 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCC--CC--C-CCcceeeHHHHHH-HHHHHHHHH--hcCHHHHHH
Confidence 56666677777777777788888888888888766433 10 1 1122222333333 333333322 333455666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011741 369 ITSICTIGWVGGYAVPI 385 (478)
Q Consensus 369 l~~~~~~~~~~~~~l~~ 385 (478)
...++.+...+..++..
T Consensus 479 ~sii~alPf~~I~ll~~ 495 (679)
T PRK09928 479 TTVIMGLPFSFVIFFVM 495 (679)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 65555555555444433
No 102
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=92.01 E-value=7.6 Score=40.08 Aligned_cols=121 Identities=9% Similarity=-0.014 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhhcCC--CCchhhH---HHhhcCCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011741 32 FTWFVGLAMAEICSSFPT--TGSLYFW---AAHLASPKWGPF---ASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLC 103 (478)
Q Consensus 32 ~~~~~a~~~~el~~~~p~--~GG~y~~---~~~~~g~~~g~~---~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 103 (478)
+.+.+..=|.-+..+-.+ +||..+- ++|..+| +.++ .|.+-+-.+.-+-++++|.+.....+-+...-
T Consensus 66 LtlIVTiKYv~~vlRADN~GEGGilsL~aL~~~~~~~-~~~~l~~~g~iGaalf~GD~vITPAiSVlSAvEGL~iv~--- 141 (627)
T COG3158 66 LTLIVTIKYVLFVLRADNNGEGGILSLMALARRAAPR-RTALLIILGLIGAALFYGDAVITPAISVLSAVEGLEIVT--- 141 (627)
T ss_pred HHHHHHHhhheeEEecCCCCCchhhhHHHHHHhhcCC-CchhhhhHHHHhHHHHhcccccchhHHHHHHhccccccC---
Confidence 344455556666666654 4675543 4444332 2211 22222322333345555555555555444331
Q ss_pred cCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhe
Q 011741 104 TGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPL 165 (478)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 165 (478)
+... .....+++++++....+.-+|....+|+---.+.+=...+....+.-+.
T Consensus 142 ------p~~~---~~Vvpitl~IL~~LF~iQ~~GT~~Vg~~FGPVm~lWF~~l~~~Gl~~i~ 194 (627)
T COG3158 142 ------PALD---PYVVPITLIILVLLFLIQRFGTGRVGKLFGPVMLLWFLALAVLGLINII 194 (627)
T ss_pred ------cccc---CccHHHHHHHHHHHHHHhcccchhhhhhhccHHHHHHHHHHHHHHHHHh
Confidence 1111 2335677888889999999999999988877777666655555554443
No 103
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=88.98 E-value=29 Score=35.50 Aligned_cols=92 Identities=15% Similarity=-0.003 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHcccccc-HHHHH
Q 011741 289 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKV-NVVFT 367 (478)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l~~~~~-~~~~~ 367 (478)
...+.....++.++....+..-+.+-.+-.++.++.-+ +- + .+|...=.+++.. +.++..+++ .+. -+..+
T Consensus 354 ~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~--~~--e-p~~~~ri~W~v~i-g~~a~~ll~--~gG~l~~lQ 425 (453)
T TIGR00842 354 LGTITSALALIVIIIFFITSADSGALVLANTSSRGGQL--GE--E-PPKWVRVFWAVAI-GLIALVLLF--SGGSLAALQ 425 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCC--CC--C-CCcccchHHHHHH-HHHHHHHHH--hcCcHHHHH
Confidence 56677777777777778888888888888774433222 10 0 0122223333333 333333332 222 45556
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011741 368 AITSICTIGWVGGYAVPIFAR 388 (478)
Q Consensus 368 ~l~~~~~~~~~~~~~l~~~~~ 388 (478)
....+..+...+...+...+.
T Consensus 426 ~~~ii~alP~~~i~~l~~~sl 446 (453)
T TIGR00842 426 TTAIIAALPFSLVMLVVMASL 446 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555444333
No 104
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=80.35 E-value=78 Score=32.91 Aligned_cols=90 Identities=12% Similarity=0.073 Sum_probs=48.1
Q ss_pred hhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHh---
Q 011741 59 HLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNT--- 135 (478)
Q Consensus 59 ~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~--- 135 (478)
-.+|++.....|-..--+.+++.+...++..-.....++.-++.. .+..++.+.+..+-+++.++.+.-..
T Consensus 178 Pllg~~~~G~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l------~gip~~~~~q~~iI~vi~~~~~~S~~sGv 251 (537)
T COG1292 178 PLLGERIKGPIGHAVDILAIIATLFGIATSLGLGALQLTAGLSYL------FGIPNSFAVQAIIIAVITALFTISVWSGL 251 (537)
T ss_pred hhhcccccCccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------hCCCChHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444333345555556666666667776666666666655543 23344555555444444444444444
Q ss_pred -hhhhHHHHHHHHHHHHHHH
Q 011741 136 -FALEVIAFIDIISMWWQVA 154 (478)
Q Consensus 136 -~g~~~~~~~~~~~~~~~i~ 154 (478)
+|+|...+++..+....++
T Consensus 252 ~KGIr~LS~~n~~la~~lll 271 (537)
T COG1292 252 DKGIRVLSNINMVLAFLLLL 271 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655554443
No 105
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=78.70 E-value=82 Score=32.25 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheeccccccccccc----ceee---ccCCCCCCCCchhHHH
Q 011741 125 GLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVF----THFE---MSPEATGISSKPYAVI 197 (478)
Q Consensus 125 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~ 197 (478)
+.++.....-+-|.|...+.|.+=..+.+...++..+....+.+....+.+.. ++.+ ...+++....+ .+
T Consensus 161 g~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~---~i 237 (529)
T COG4147 161 GGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKD---PI 237 (529)
T ss_pred HhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccC---HH
Confidence 34444455556688888888888777777766666665555432111111111 1110 00111111111 22
Q ss_pred HHHHhhhhhhhccchhhhh------hhhhcCcccccchHHHHHHHHHHHHHHHHHH
Q 011741 198 LSFLVSQYSLYGYDSAAHL------TEETKGADKTGPIAILSSIGIISIFGWALIL 247 (478)
Q Consensus 198 ~~~~~~~~af~G~e~~~~~------~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~ 247 (478)
..+...+--..|.-..+|. ..+.|+. .++..++...++.+|+....
T Consensus 238 ~~isl~~aLm~GTAgLPHil~RFfTvp~~k~A----R~Sv~wA~~fIg~fYi~~~~ 289 (529)
T COG4147 238 DFISLGFALMVGTAGLPHILMRFFTVPDAKEA----RKSVFWATGFIGIFYILTPI 289 (529)
T ss_pred HHHHHHHHHHHccCCCCeEEEEEEecCcHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 2223222233566655554 3344444 45566778888889887544
No 106
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=66.39 E-value=50 Score=29.82 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=5.6
Q ss_pred HHHHHhhhcccce
Q 011741 450 GLIMLWWLLDARK 462 (478)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (478)
+..++.|++++|.
T Consensus 189 i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 189 IAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHh
Confidence 3334445454443
No 107
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=61.88 E-value=1.1e+02 Score=26.88 Aligned_cols=11 Identities=9% Similarity=0.431 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 011741 344 AVWLCAAICII 354 (478)
Q Consensus 344 A~~~~~~i~~i 354 (478)
++++.+.++++
T Consensus 101 sLl~lg~~aLl 111 (226)
T COG4858 101 SLLFLGAMALL 111 (226)
T ss_pred cHHHHHHHHHH
Confidence 45555555554
No 108
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=58.48 E-value=1.7e+02 Score=27.69 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHc
Q 011741 289 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL 357 (478)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~~~~P~~A~~~~~~i~~i~~l 357 (478)
....+....++..+.........+.|++....++. +.+.+.+ +.+.|.+.+++..+.......
T Consensus 157 ~~~~~P~~~~i~~~~~~~~~~~l~~~il~r~~~~~-----~~~~~~~-~~~lP~~~~~~~i~~~~~~l~ 219 (290)
T PF09991_consen 157 IKRLFPALLIISALLMSLINYYLARRILRRLGIPI-----PPLPPFR-EWRLPRWLIWLLIVALALSLV 219 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCCchH-HHhCcHHHHHHHHHHHHHHHH
Confidence 34444444555555555555566666665555442 2233444 678999998887665555433
No 109
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=50.20 E-value=2.7e+02 Score=27.68 Aligned_cols=53 Identities=8% Similarity=0.069 Sum_probs=38.8
Q ss_pred HHhhhhhhhccch---hhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011741 200 FLVSQYSLYGYDS---AAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 253 (478)
Q Consensus 200 ~~~~~~af~G~e~---~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~ 253 (478)
+..+|=+-.||.+ ....+...|| +||...--..+++.-+++-++...+.....
T Consensus 293 ITIACGAiSGFHsLv~SgttsKql~~-E~d~r~VgYGaMl~Eg~lAli~~~a~~~~~ 348 (376)
T PF02554_consen 293 ITIACGAISGFHSLVSSGTTSKQLDK-EKDARPVGYGAMLTEGFLALIWLAAAMAFF 348 (376)
T ss_pred HHHHhhhhcchhhhhcCCCcHhhHhc-ccccceeehhHHHHHHHHHHHHHHHHHHhc
Confidence 3445568899988 3555666666 788888888888888888887777766665
No 110
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=49.65 E-value=2.9e+02 Score=27.82 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=27.2
Q ss_pred HHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 011741 277 YDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 318 (478)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 318 (478)
.+.+++.+|+. ...++.++.+.+..++..+...+..-+...
T Consensus 283 ~~~L~p~~G~~-a~~lF~igLlaAG~sS~it~~~ag~~v~~g 323 (390)
T TIGR01197 283 GVLLGCLFSPA-AGYIFAVGLLAAGQSSGMVGTYSGQFVMEG 323 (390)
T ss_pred HHHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34445555553 677888888888888888877755544443
No 111
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=48.10 E-value=3.7e+02 Score=28.59 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=63.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccceeeccCCCCCCCC
Q 011741 112 YFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISS 191 (478)
Q Consensus 112 ~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (478)
..++.|...+-.+++.+++......|.|.++|+.-+++.+-.+++.++.+-+.-..+.++..++..++. .+ .+.
T Consensus 247 ~g~~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~---~~--kl~- 320 (629)
T KOG3659|consen 247 LGGPSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPD---IE--KLK- 320 (629)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheeccc---HH--HHh-
Confidence 334455555555555566667778899999998666655554444444444442222122222222211 00 010
Q ss_pred chhHHHHHHHhhhhhh-hccchhhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHH
Q 011741 192 KPYAVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILA 248 (478)
Q Consensus 192 ~~~~~~~~~~~~~~af-~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~ 248 (478)
.......+..-++++. .|+...-.+++-.|--.+-..=|++.|.+ -...+++....
T Consensus 321 ~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F~NNc~rDAll~S~i-n~~ts~~sgfv 377 (629)
T KOG3659|consen 321 EPSVWIDAATQIFFSLGPGFGVLIAFASYNKFHNNCYRDALLTSII-NCLTSFLSGFV 377 (629)
T ss_pred hHHHHHHHHHHHHhhcCccchhhhhhhhhcccccchhhhhHHHHHH-HHHHHHHHHHH
Confidence 1223444444555544 67777766666655433334444444433 33333443333
No 112
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=46.15 E-value=1.4e+02 Score=28.63 Aligned_cols=29 Identities=14% Similarity=0.025 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhccccCCCCCcccCCchhh
Q 011741 381 YAVPIFARMVMAEQKFNAGPFYLGKASRP 409 (478)
Q Consensus 381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (478)
..+......+.+|+++++.||-.+|.-..
T Consensus 53 ~~l~l~~~~~s~k~~d~~~pyG~~r~E~l 81 (299)
T PRK09509 53 SLTNLLVVRYSLQPADDEHTFGHGKAESL 81 (299)
T ss_pred HHHHHHHHHHhCCCCCCCCCCccHHHHHH
Confidence 33333344444556666666655543333
No 113
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=42.24 E-value=1.3e+02 Score=25.72 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=9.0
Q ss_pred hhcccceeeeCCccc
Q 011741 456 WLLDARKWFTGPVRN 470 (478)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (478)
-..+.|+.++||-|.
T Consensus 140 s~~W~~~f~~GPlE~ 154 (163)
T PF04235_consen 140 SYLWLRRFRRGPLEW 154 (163)
T ss_pred HHHHHHhcCcCcHHH
Confidence 334456677788653
No 114
>PRK03557 zinc transporter ZitB; Provisional
Probab=41.85 E-value=3.3e+02 Score=26.31 Aligned_cols=30 Identities=7% Similarity=-0.083 Sum_probs=15.2
Q ss_pred HHHHHHHHhhccccCCCCCcccCCchhhHH
Q 011741 382 AVPIFARMVMAEQKFNAGPFYLGKASRPIC 411 (478)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (478)
.+........+|+++++-||-.+|.-...+
T Consensus 62 ~~~l~a~~~s~kp~d~~hpyG~~r~E~l~a 91 (312)
T PRK03557 62 LFALLAVQFSRRPPTIRHTFGWLRLTTLAA 91 (312)
T ss_pred HHHHHHHHHhcCCCCCCCCCchHHHHHHHH
Confidence 333334444556666666665554444333
No 115
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=41.02 E-value=66 Score=22.31 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHHHHHHHH
Q 011741 198 LSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGW 243 (478)
Q Consensus 198 ~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~ 243 (478)
..+-...|+|.|...-.+.-+|.++.+ |.-.++.-++..++++
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV 45 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFV 45 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHH
Confidence 344556789999988887777765422 4444444433333333
No 116
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=40.09 E-value=48 Score=19.88 Aligned_cols=17 Identities=29% Similarity=0.059 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 011741 442 PVALGVGLGLIMLWWLLD 459 (478)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~ 459 (478)
....++.++.+ ..++.+
T Consensus 13 ~~~~G~~l~~~-~~~~~~ 29 (34)
T TIGR01167 13 LLLLGLLLLGL-GGLLLR 29 (34)
T ss_pred HHHHHHHHHHH-HHHHhe
Confidence 34444433333 334333
No 117
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=39.18 E-value=2e+02 Score=23.02 Aligned_cols=14 Identities=14% Similarity=-0.107 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHHH
Q 011741 341 PSNAVWLCAAICII 354 (478)
Q Consensus 341 P~~A~~~~~~i~~i 354 (478)
-....+...++..+
T Consensus 14 fw~~~l~~~~~~~~ 27 (120)
T PF05656_consen 14 FWWFFLINILIFIL 27 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 118
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=36.31 E-value=1.3e+02 Score=23.07 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhcccce
Q 011741 443 VALGVGLGLIMLWWLLDARK 462 (478)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~ 462 (478)
.++++++.++.++|-.|.|+
T Consensus 52 FI~giil~lG~~i~s~ygr~ 71 (92)
T PF05767_consen 52 FILGIILTLGIVIFSMYGRY 71 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44456666677777666554
No 119
>PTZ00206 amino acid transporter; Provisional
Probab=35.15 E-value=5.2e+02 Score=26.63 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=37.5
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCccccccc
Q 011741 274 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWR 332 (478)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~ 332 (478)
++....+ |.+ +..+..+..++..+++..+++...+..+...-++...| +++.
T Consensus 125 ~la~~~~----G~~-g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~--~~~~ 176 (467)
T PTZ00206 125 GVARVLL----GPW-GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP--DFLK 176 (467)
T ss_pred HHHHHHh----CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--chhh
Confidence 5554444 432 78888999999999999999999998887765544445 5443
No 120
>PF14256 YwiC: YwiC-like protein
Probab=34.09 E-value=1.3e+02 Score=24.93 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 011741 375 IGWVGGYAVP 384 (478)
Q Consensus 375 ~~~~~~~~l~ 384 (478)
.+.+..|...
T Consensus 32 ~aw~~~yl~~ 41 (129)
T PF14256_consen 32 LAWLFGYLAF 41 (129)
T ss_pred HHHHHHHHHH
Confidence 4444556653
No 121
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=32.46 E-value=2e+02 Score=26.26 Aligned_cols=28 Identities=4% Similarity=-0.056 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHhhhcccceeeeCCc
Q 011741 441 APVALGVGLGLIMLWWLLDARKWFTGPV 468 (478)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
....+.+++..+.+.+...+.+.+|.+.
T Consensus 177 N~~gl~~~~fg~~V~~~~~~~~~kr~~~ 204 (214)
T cd08764 177 NFIGIVLVIFGGLVVYLVTEPDYKRIEL 204 (214)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCCCCC
Confidence 3455555566666666666555444443
No 122
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.87 E-value=37 Score=27.79 Aligned_cols=17 Identities=0% Similarity=-0.140 Sum_probs=7.2
Q ss_pred HHHHHHHhhhcccceee
Q 011741 448 GLGLIMLWWLLDARKWF 464 (478)
Q Consensus 448 ~~~~~~~~~~~~~~~~~ 464 (478)
+.++.+++|+.+|++++
T Consensus 78 Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33334555555554444
No 123
>PRK09928 choline transport protein BetT; Provisional
Probab=28.41 E-value=6e+02 Score=27.66 Aligned_cols=91 Identities=12% Similarity=-0.002 Sum_probs=38.6
Q ss_pred HHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhh
Q 011741 57 AAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTF 136 (478)
Q Consensus 57 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 136 (478)
.+-.+|+|.....|-..=....++.+...++..-.....++.-+... .+...+......+-+++.++.+.-...
T Consensus 180 l~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~l------fGi~~~~~~q~~ii~vi~~i~~~S~~s 253 (679)
T PRK09928 180 LYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVL------FDIPESLAAQAALIALSVIIATISVTS 253 (679)
T ss_pred hhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 34445544323334333334444444444444444444444444432 233333333333333333333333343
Q ss_pred ----hhhHHHHHHHHHHHHHH
Q 011741 137 ----ALEVIAFIDIISMWWQV 153 (478)
Q Consensus 137 ----g~~~~~~~~~~~~~~~i 153 (478)
|+|....+|..+....+
T Consensus 254 Gl~KGIk~LS~lN~~La~~Ll 274 (679)
T PRK09928 254 GVNKGIRVLSELNVLLALGLI 274 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544333
No 124
>COG4025 Predicted membrane protein [Function unknown]
Probab=28.30 E-value=2.4e+02 Score=25.88 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=13.0
Q ss_pred hhhhhHHHhcCCCCCc
Q 011741 311 SAARVVYALSRDKGIP 326 (478)
Q Consensus 311 ~~sR~l~~~a~dg~lP 326 (478)
.--|-..++.||+.+|
T Consensus 55 ~~ve~v~e~~re~~i~ 70 (284)
T COG4025 55 SKVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 4567788999999987
No 125
>PLN02351 cytochromes b561 family protein
Probab=28.25 E-value=3.2e+02 Score=25.38 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhhcccceeee
Q 011741 442 PVALGVGLGLIMLWWLLDARKWFT 465 (478)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~ 465 (478)
...+.+++..+.+.+..-..+.+|
T Consensus 203 ~~Glliv~fG~~Vv~~~~~p~~kr 226 (242)
T PLN02351 203 GLGLGLALLSGIVILAAVLPKYQS 226 (242)
T ss_pred HHHHHHHHHHHHHHHhhcCccccC
Confidence 444455555556666664433333
No 126
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=27.18 E-value=78 Score=28.45 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=21.3
Q ss_pred hhhhcCcc-cccchHHHHHHHHHHHHHHHH
Q 011741 217 TEETKGAD-KTGPIAILSSIGIISIFGWAL 245 (478)
Q Consensus 217 ~~E~k~p~-k~ip~ai~~~~~~~~~~y~l~ 245 (478)
-|-.+||| |+.||+++.+.+...++-+..
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~ 233 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVA 233 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 34567898 999999998877666554443
No 127
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=26.93 E-value=1.1e+02 Score=22.64 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=29.2
Q ss_pred hhhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHH
Q 011741 213 AAHLTEETKGADKTGPIAILSSIGIISIFGWALILAL 249 (478)
Q Consensus 213 ~~~~~~E~k~p~k~ip~ai~~~~~~~~~~y~l~~~~~ 249 (478)
-..+-+|+|.|=|.+.+....+....+.+..++...=
T Consensus 6 ~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~r 42 (75)
T PF11998_consen 6 YARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFR 42 (75)
T ss_pred HHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999998888887766655543
No 128
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=25.55 E-value=2.6e+02 Score=27.02 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=15.6
Q ss_pred HHHhhccccCCCCCcccCCchhhHHHHH
Q 011741 387 ARMVMAEQKFNAGPFYLGKASRPICLIA 414 (478)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (478)
...+.+|+++.+-||-.+|.-.+.+.+.
T Consensus 61 ~l~~s~kp~d~~HpyGh~k~E~l~sl~~ 88 (304)
T COG0053 61 GLRISSKPPDRDHPYGHGKAETLASLIV 88 (304)
T ss_pred HHHHhcCCCCCCCCCCchhHHHHHHHHH
Confidence 4455556677767776665444443333
No 129
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=25.35 E-value=6.7e+02 Score=24.81 Aligned_cols=210 Identities=12% Similarity=0.091 Sum_probs=107.6
Q ss_pred chhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCc-------hhhHHHhh-cCCCcc-cchHHHHHHHH
Q 011741 8 NSEEKCLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSF-PTTGS-------LYFWAAHL-ASPKWG-PFASWCCAWLE 77 (478)
Q Consensus 8 ~~~~~~~~~~G~~~~~l~~li~~~~~~~~a~~~~el~~~~-p~~GG-------~y~~~~~~-~g~~~g-~~~g~~~~~~~ 77 (478)
.++++++..+|.. .+.+.+.++.++.-.+-...| ..| |..-| .|.-+.+. ++|.+| +++.. +.
T Consensus 136 vgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~--CLYE~~~dGevVrvRdsYvaIA~~C~~P~lGgr~V~~----AQ 208 (524)
T KOG4303|consen 136 VGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIE--CLYENGEDGEVVRVRDSYVAIADFCYKPGLGGRWVLA----AQ 208 (524)
T ss_pred eccceeeeEcchh-HHHHHHhhhhhhhccchhhhh--hhccCCCCCcEEEeehhHHHHHHHhcCCCcchheeeH----HH
Confidence 4566777778877 444333333333322222222 222 22122 34444444 677765 33322 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 011741 78 TIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGL 157 (478)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~ 157 (478)
.+....++-.+....++.+.+-++. .......|. ...+..++- +. -+...|...|+....+.-+++.-+
T Consensus 209 liELlmTCIlYvVv~gdLl~~~fP~-------~svd~~sWm-~i~~a~LLp-c~--FLk~Lk~VS~lSf~ct~sH~viN~ 277 (524)
T KOG4303|consen 209 LIELLMTCILYVVVAGDLLQSCFPG-------LSVDKASWM-MITSASLLP-CS--FLKDLKIVSRLSFFCTISHLVINL 277 (524)
T ss_pred HHHHHHHHHhhhheechhhhccCCC-------CCccccchh-hhhhHHHhh-hH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566666777665532 122222222 222222222 22 235678888888888888888777
Q ss_pred HhhhhhheecccccccccccceeeccCCCCCCCCchhHHHHHHHhhhhhhhccchhhhhhhhhcCcccccchHHHHHHHH
Q 011741 158 VIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGI 237 (478)
Q Consensus 158 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~ai~~~~~~ 237 (478)
+++...+..... +.++..+...+-..+ -..+..+.|+|+---..+++-+.+|||.+ +-.-+-++-+.
T Consensus 278 i~v~YCLs~~~d-----W~wskv~Fsidi~~f-------PisvG~iVFsYTSqIFLP~LEGNM~~ps~-Fn~Ml~WsHIA 344 (524)
T KOG4303|consen 278 IMVLYCLSFVSD-----WSWSKVTFSIDINTF-------PISVGMIVFSYTSQIFLPNLEGNMKNPSQ-FNVMLKWSHIA 344 (524)
T ss_pred HHHHHHHHHhhh-----ccceeEEEEEEcccC-------ceEEEEEEEeeeceeeccccccccCChhH-heeeeehHHHH
Confidence 776666543322 222221100111122 12334556888887778999999999865 34445566666
Q ss_pred HHHHHHHHHHH
Q 011741 238 ISIFGWALILA 248 (478)
Q Consensus 238 ~~~~y~l~~~~ 248 (478)
..++=.+..+.
T Consensus 345 AaVfK~~Fg~~ 355 (524)
T KOG4303|consen 345 AAVFKVVFGML 355 (524)
T ss_pred HHHHHHHHHHh
Confidence 66554444433
No 130
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=23.67 E-value=3.5e+02 Score=25.18 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=10.9
Q ss_pred HHhhccccCCCCCcccCCchh
Q 011741 388 RMVMAEQKFNAGPFYLGKASR 408 (478)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~ 408 (478)
....+|+++++.||-.+|.-.
T Consensus 39 ~~~~~~~~d~~~pyG~~r~E~ 59 (268)
T TIGR01297 39 LRISRRPADERHPFGHGRAEI 59 (268)
T ss_pred HHHhCCCCCCCCCCchHHHHH
Confidence 334445566666665554333
No 131
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=23.41 E-value=8.1e+02 Score=25.06 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhhhhHHHhcCCCCCc
Q 011741 301 FFFGGLSVTTSAARVVYALSRDKGIP 326 (478)
Q Consensus 301 ~~~~~~~~~~~~sR~l~~~a~dg~lP 326 (478)
..++.....++.|+.+..+=-||.=|
T Consensus 68 ~i~s~f~i~YG~sKf~~G~~sDr~np 93 (448)
T COG2271 68 ILGSAFSITYGVSKFVMGVLSDRSNP 93 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 34556667788899888877787555
No 132
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=23.26 E-value=63 Score=26.21 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=12.0
Q ss_pred cchHHHHHHHHHHHHHhh
Q 011741 439 NYAPVALGVGLGLIMLWW 456 (478)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~ 456 (478)
.+.+.++++++++-++|.
T Consensus 76 ~~~llilG~L~fIPG~Y~ 93 (115)
T PF05915_consen 76 GWALLILGILCFIPGFYH 93 (115)
T ss_pred cchHHHHHHHHHhccHHH
Confidence 456677777777766653
No 133
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=22.63 E-value=59 Score=26.57 Aligned_cols=31 Identities=23% Similarity=0.100 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHH-HhhhcccceeeeCCccc
Q 011741 440 YAPVALGVGLGLIM-LWWLLDARKWFTGPVRN 470 (478)
Q Consensus 440 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 470 (478)
..+...|+.+++.. +.|..+.||++++.++.
T Consensus 85 ~vlLs~GLmlL~~~alcW~~~~rkK~~kr~eS 116 (129)
T PF15099_consen 85 PVLLSLGLMLLACSALCWKPIIRKKKKKRRES 116 (129)
T ss_pred HHHHHHHHHHHHhhhheehhhhHhHHHHhhhh
Confidence 35556666666665 77777665555444443
No 134
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=22.40 E-value=29 Score=32.55 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=0.0
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHc
Q 011741 333 QLHPKHKVPSNAVWLCAAICIILGL 357 (478)
Q Consensus 333 ~~~~~~~~P~~A~~~~~~i~~i~~l 357 (478)
|++||--.|...+.+...+-++.++
T Consensus 13 ~r~pr~p~~~a~l~~~~llll~ail 37 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGLLLLLVAIL 37 (381)
T ss_dssp -------------------------
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHH
Confidence 5567755666666655544444333
No 135
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=22.25 E-value=5.7e+02 Score=22.87 Aligned_cols=8 Identities=13% Similarity=0.339 Sum_probs=4.3
Q ss_pred ChHHHHHH
Q 011741 340 VPSNAVWL 347 (478)
Q Consensus 340 ~P~~A~~~ 347 (478)
-|.++.+.
T Consensus 27 n~v~s~l~ 34 (198)
T PRK06638 27 NPVHSALF 34 (198)
T ss_pred cHHHHHHH
Confidence 36666544
No 136
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=21.77 E-value=7.6e+02 Score=25.70 Aligned_cols=28 Identities=11% Similarity=-0.148 Sum_probs=16.1
Q ss_pred hhhhhcCcccccchHHHHHHHHHHHHHH
Q 011741 216 LTEETKGADKTGPIAILSSIGIISIFGW 243 (478)
Q Consensus 216 ~~~E~k~p~k~ip~ai~~~~~~~~~~y~ 243 (478)
.++|.++.+|+=-|.+.+..+...+..+
T Consensus 21 ~~~~~~~~~~t~wrsi~l~~~~sfl~~v 48 (488)
T KOG2325|consen 21 DSLSPLDERKTNWRSIYLALLNSFLVAV 48 (488)
T ss_pred CccccccccCCchHhHHHHHHHHHHHhh
Confidence 3455556666666777766655544433
No 137
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=21.35 E-value=5.9e+02 Score=24.59 Aligned_cols=41 Identities=10% Similarity=0.018 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHH
Q 011741 340 VPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAV 383 (478)
Q Consensus 340 ~P~~A~~~~~~i~~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~l 383 (478)
.|..|+.+..+++.+-..... -..+.+...-....++.|..
T Consensus 97 ~p~~al~fgl~L~~~g~~~l~---~~vn~laa~l~~~gi~~Yv~ 137 (304)
T COG0109 97 SPREALAFGLVLGVAGFSLLW---FLVNLLAAVLGLFGIFFYVV 137 (304)
T ss_pred CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 578888888877777554321 12244444444444455554
No 138
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=21.16 E-value=3.8e+02 Score=20.44 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhhccc
Q 011741 446 GVGLGLIMLWWLLDA 460 (478)
Q Consensus 446 ~~~~~~~~~~~~~~~ 460 (478)
+.++.++.+.+-.|+
T Consensus 56 G~vl~lGilifs~y~ 70 (91)
T PHA02680 56 GAVLLLGLFVFSMYR 70 (91)
T ss_pred HHHHHHHHHHHHHhc
Confidence 333444444444443
No 139
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=21.09 E-value=76 Score=20.32 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=6.6
Q ss_pred HHHHHHHHhhhcccce
Q 011741 447 VGLGLIMLWWLLDARK 462 (478)
Q Consensus 447 ~~~~~~~~~~~~~~~~ 462 (478)
+.++++.+++++|+|+
T Consensus 24 I~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 24 IIIVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHHHhheEEecc
Confidence 3333344444444443
No 140
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=20.76 E-value=1.1e+03 Score=25.72 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=34.4
Q ss_pred HHHhhhhhhhccchhhhhhhhhcCcc--cccchHHHHHHHHHHHHHHHHHHHHHh
Q 011741 199 SFLVSQYSLYGYDSAAHLTEETKGAD--KTGPIAILSSIGIISIFGWALILALCF 251 (478)
Q Consensus 199 ~~~~~~~af~G~e~~~~~~~E~k~p~--k~ip~ai~~~~~~~~~~y~l~~~~~~~ 251 (478)
.+..-.+++.....+.++.+|.|=-+ |--||++..+-++..++-.++.+++..
T Consensus 472 ~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~ 526 (681)
T TIGR00727 472 MMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLN 526 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777777888888877322 555677666666666665555555554
No 141
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=20.56 E-value=1.3e+02 Score=26.11 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=20.8
Q ss_pred hhhhcCcc-cccchHHHHHHHHHHHHHHHH
Q 011741 217 TEETKGAD-KTGPIAILSSIGIISIFGWAL 245 (478)
Q Consensus 217 ~~E~k~p~-k~ip~ai~~~~~~~~~~y~l~ 245 (478)
-|-.+||| |+.||+.+.+.....+.-++.
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia 223 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIA 223 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHH
Confidence 34567898 899999998876665554443
No 142
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=20.48 E-value=3.9e+02 Score=25.72 Aligned_cols=64 Identities=19% Similarity=0.030 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCccccccc-ccccCCCChHHHHHHHHHHHHHHHc
Q 011741 289 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWR-QLHPKHKVPSNAVWLCAAICIILGL 357 (478)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~-~~~~~~~~P~~A~~~~~~i~~i~~l 357 (478)
...+..+..+.+.............++...+.+-+ +..+ +.-+||+.=.+.++++.+.+.++.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k-----~~iS~~ty~kHk~av~SLi~Q~~~~~i~~~ 254 (303)
T PF10327_consen 190 WFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLK-----KKISKQTYQKHKEAVRSLIAQFATSSICIL 254 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666677777777788888888887665 2222 2234678899999999988887764
No 143
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=20.37 E-value=1.1e+03 Score=25.37 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHhhhcccc
Q 011741 441 APVALGVGLGLIMLWWLLDAR 461 (478)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~ 461 (478)
..++++...+..+..|..+.+
T Consensus 275 a~lviG~~~Lv~F~~wE~~~~ 295 (599)
T PF06609_consen 275 APLVIGFVLLVAFVVWEWFGA 295 (599)
T ss_pred hhHHHHHHHHHHHHHhhhhcc
Confidence 456677777777777765543
No 144
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=20.02 E-value=4.3e+02 Score=27.26 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHHHHhcc
Q 011741 407 SRPICLIAFLWICYTCSVFLL 427 (478)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~ 427 (478)
+.+..+..+.+.+.-.++-++
T Consensus 223 G~lf~lYli~Ygi~RF~iEfl 243 (460)
T PRK13108 223 GRLFGFYVAFYCAGRFCVELL 243 (460)
T ss_pred chHHHHHHHHHHHHHHHhhhh
Confidence 455566666666665555544
Done!