Query 011743
Match_columns 478
No_of_seqs 165 out of 1864
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 14:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 1.6E-29 5.5E-34 263.2 25.3 406 8-477 6-435 (491)
2 2xut_A Proton/peptide symporte 100.0 5.5E-29 1.9E-33 261.5 19.1 420 11-477 8-454 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 3.2E-24 1.1E-28 220.0 17.6 363 14-477 27-396 (451)
4 3o7q_A L-fucose-proton symport 99.9 1.8E-22 6.2E-27 206.3 27.7 343 12-476 23-393 (438)
5 2gfp_A EMRD, multidrug resista 99.9 7E-23 2.4E-27 205.5 15.8 167 18-211 3-169 (375)
6 4gc0_A D-xylose-proton symport 99.8 1.8E-20 6.1E-25 194.7 18.1 154 49-210 53-214 (491)
7 2cfq_A Lactose permease; trans 99.8 1.1E-20 3.8E-25 192.9 4.0 168 15-206 7-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 9.7E-14 3.3E-18 141.8 13.0 178 15-216 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 6.9E-12 2.4E-16 127.5 15.5 169 15-212 258-428 (438)
10 2cfq_A Lactose permease; trans 99.3 2.1E-12 7.3E-17 131.4 10.4 176 17-218 222-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 3.1E-11 1E-15 124.9 11.5 184 17-218 285-473 (491)
12 4gc0_A D-xylose-proton symport 99.0 3.2E-09 1.1E-13 109.6 16.2 177 20-218 281-464 (491)
13 2gfp_A EMRD, multidrug resista 98.9 3.7E-10 1.3E-14 112.4 2.3 162 15-203 199-363 (375)
14 2xut_A Proton/peptide symporte 98.2 4.7E-07 1.6E-11 94.1 2.9 150 52-218 336-504 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=1.6e-29 Score=263.22 Aligned_cols=406 Identities=17% Similarity=0.242 Sum_probs=280.1
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccc-----cCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchh
Q 011743 8 IKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNE-----MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF 82 (478)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~ 82 (478)
+..++++|..+.+++..+++++++|++..+++.|+.++ +|++..+++++.+++.++..++.+++|+++|||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r 85 (491)
T 4aps_A 6 KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR 85 (491)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 34566889999999999999999999999999999988 9999999999999999999999999999999955999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhh
Q 011743 83 ATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAK 162 (478)
Q Consensus 83 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~ 162 (478)
+++.++.++.+++.+++..+. +.+.++++|+++|+|.+...|+..++++|++|+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--- 143 (491)
T 4aps_A 86 PAVFWGGVLIMLGHIVLALPF-------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR--- 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH---
T ss_pred HHHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc---
Confidence 999999999999998887653 6778899999999999999999999999999987632
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeec---CCCC-CchhHHHHHHH
Q 011743 163 ALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQ---QPGE-SPLVRVAQVIV 238 (478)
Q Consensus 163 ~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~ 238 (478)
|++++++++...++|..++|.+++++.+..||++.|++.++..+++.+.+++..++..++ +++. .+..+..+...
T Consensus 144 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
T 4aps_A 144 -RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV 222 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred -ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence 678888899999999999999999999889999999998887776666655443322221 1111 11111111000
Q ss_pred --------------HHHHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhH
Q 011743 239 --------------VAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVE 304 (478)
Q Consensus 239 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 304 (478)
........+ .++.......... . .+ ..+... ..+.+ + ....
T Consensus 223 ~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~-----~~----~~~~~~-~~~~~------~------~~~~ 277 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLVGWNS--LPAYINLLTIVAI-A-----IP----VFYFAW-MISSV------K------VTST 277 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHHSSCC--TTHHHHHHHHHHH-H-----HH----HHHHHH-HC--------------------
T ss_pred HHHHHHHHHHHHHHHHHhccCcc--cccchhhhhHHHH-H-----HH----HHHHHH-Hhhcc------c------ccHH
Confidence 000111100 0000000000000 0 00 000000 00000 0 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhhcc-cCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCC
Q 011743 305 EVKILARMMPILASTIIMNTCLAQLQTLSVTQGAY-MDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGH 383 (478)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~ 383 (478)
++++......++.....++..+.+..+.+...... .+.+ ....+.+...+.+..++..++.+++.+++.||.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~--- 350 (491)
T 4aps_A 278 EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ--- 350 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC---
Confidence 23333344555656666677776666544333322 2222 245677888889999999999999888776663
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhH
Q 011743 384 PAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT 463 (478)
Q Consensus 384 ~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g 463 (478)
....+++.+|.++.++++.+....... ..++ ...+.+++++.+++.+++++...|..++++.+..|+++||
T Consensus 351 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 351 ---PSSPTKFAVGLMFAGLSFLLMAIPGAL---YGTS---GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS 421 (491)
T ss_dssp -----CHHHHHHHHHHHHHHHTTTHHHHHH---CCCC---TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHHh---cCCC---CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence 355677888999998888877765422 1111 1246778888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccC
Q 011743 464 LLLHLHFCHCHLAT 477 (478)
Q Consensus 464 ~~~g~~~~~~~lg~ 477 (478)
+++|+.++..++|+
T Consensus 422 ~~~g~~~~~~~~g~ 435 (491)
T 4aps_A 422 QMMSMWFLSSSVGS 435 (491)
T ss_dssp SSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888764
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=5.5e-29 Score=261.46 Aligned_cols=420 Identities=17% Similarity=0.295 Sum_probs=272.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccC------CchhhHhHHHHHHHHHHHHHhhHHHHHhhhcc-chhH
Q 011743 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMH------FDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-SRFA 83 (478)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg------~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Gr~~ 83 (478)
+.++|.++.+.+..++.++++|++.++++.|+.+++| ++..+++++.+++.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~ 86 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN 86 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence 4567888999999999999999999999999999999 999999999999999999999999999999 8 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhh
Q 011743 84 TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA 163 (478)
Q Consensus 84 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~ 163 (478)
++.++.++.+++.+++..+. .+.+.++++|++.|++.+...|+..++++|++|+++ |..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~ 145 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFE------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSL 145 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTS------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTH
T ss_pred HHHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHH
Confidence 99999999999988877652 156788899999999999999999999999999877 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHh
Q 011743 164 LASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKN 243 (478)
Q Consensus 164 r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (478)
+...+++.+...++|..++|.+++++.+..||++.|++.++..+++.+.+++.+++.+++++++++..+..+.+....++
T Consensus 146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (524)
T 2xut_A 146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT 225 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhh
Confidence 23455668899999999999999999888899999999888877766666555444333333222222222222222222
Q ss_pred cCCCCCCCchhhhhhhhh----hccCccccc--------------CCCCccch--hhhhccCCCCCCCCCCcccccchhh
Q 011743 244 RKLSLPDNPEELYEINKI----ERVGTEERI--------------PHTNQFRC--LDKAAIVPKDSTAAAPWRVCTVTQV 303 (478)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v 303 (478)
++.+.+ ......+.+.. ...+..... +.++..+| +++.+... +..+.
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 292 (524)
T 2xut_A 226 KVEGKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH------------PDAAV 292 (524)
T ss_dssp -CTTHH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSC------------CSSSS
T ss_pred hhcccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccc------------cHhHH
Confidence 211000 00000000000 000000000 00000112 22111100 00112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCC
Q 011743 304 EEVKILARMMPILASTIIMNTCLAQLQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGH 383 (478)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~ 383 (478)
+++++......++.....++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..++.+|+.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 368 (524)
T 2xut_A 293 DGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV- 368 (524)
T ss_dssp TTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC-
Confidence 33444555555666666667777777666665554444321 1 2445566777788888899998876555555422
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhH
Q 011743 384 PAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT 463 (478)
Q Consensus 384 ~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g 463 (478)
+.++.+++.+|+++.+++++...+.+... +.+ ...+.+++++.+++.++++++..|..++++.+.+|+++||
T Consensus 369 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 440 (524)
T 2xut_A 369 --KLTALRKMGAGIAITGLSWIVVGTIQLMM----DGG--SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG 440 (524)
T ss_dssp ----CCHHHHHTHHHHHHHHHHTTTTTTTTT----TTT--CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCT
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHHHHHh----cCC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHh
Confidence 14566778888888888877666542110 000 1246777888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccC
Q 011743 464 LLLHLHFCHCHLAT 477 (478)
Q Consensus 464 ~~~g~~~~~~~lg~ 477 (478)
+++|++++..++|+
T Consensus 441 ~~~g~~~~~~~~g~ 454 (524)
T 2xut_A 441 TIMSFWTLSVTVGN 454 (524)
T ss_dssp TTHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888764
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.91 E-value=3.2e-24 Score=220.03 Aligned_cols=363 Identities=8% Similarity=-0.078 Sum_probs=228.8
Q ss_pred cchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743 14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (478)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 93 (478)
++.++.+++..++..+..+.+.+.++.+ .+++ .+..+.+++.+++.++..++.++.|+++|| +|||+++.++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHH
Confidence 3445555666666666666555666544 5567 999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHH----HhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHH
Q 011743 94 LSLVMLTI----QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN 169 (478)
Q Consensus 94 i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~ 169 (478)
++.+++.+ +. +.+.++++|++.|++.+...++..++++|++|+++ |+++++
T Consensus 104 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~ 158 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS 158 (451)
T ss_dssp HHHHHHHHCHHHHS-------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHH
T ss_pred HHHHHHHhhhhccc-------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHH
Confidence 99998887 54 66788899999999999999999999999999877 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcCCCC
Q 011743 170 FYLFATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNRKLSL 248 (478)
Q Consensus 170 ~~~~~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (478)
+.....++|..++|.+++++.+..| ||+.|++.+++.++..++.++..++.++.+...+. . . .
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~--~ 222 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E-------------E--Y 222 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-------------T--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-------------h--h
Confidence 9999999999999999999888788 99999998887766555544433321111100000 0 0 0
Q ss_pred CCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhh
Q 011743 249 PDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEEVKILARMMPILASTIIMNTCLAQ 328 (478)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~ 328 (478)
.... +++.+ .+ ..+ +.+++..........+.++..................
T Consensus 223 ~~~~----~~~~~------~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 223 KNDY----PDDYN------EK--AEQ-----------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp CCC------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc----cccch------hh--hhc-----------------ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 00 000 0000000000000012222222111111111111222
Q ss_pred cchhhhhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCCCCCCChhHHHHHHHHHHH-HHHHHH
Q 011743 329 LQTLSVTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGHPAGITQLQRVGVGLVLSV-ISMTIA 407 (478)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~~~~~~~~~~i~~G~~~~~-~~~~~~ 407 (478)
+.+.+..+..+.+ ....+.+.....+..++..++.+++.+++.+ ++++.+.++.++.+ ++++..
T Consensus 274 ~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 1pw4_A 274 WSPTYLKEVKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVY 338 (451)
T ss_dssp HHHHHBTTBSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHH
Confidence 2222222211111 1122344555566677777777765554300 22233445544443 444433
Q ss_pred HHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhHHHHHHHHHHhhc-cC
Q 011743 408 GFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRTLLLHLHFCHCHL-AT 477 (478)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~~~~~l-g~ 477 (478)
.+.. ..+.+......++.|++.....+....++.+..|+++||+++|+.+...++ |+
T Consensus 339 ~~~~-------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 396 (451)
T 1pw4_A 339 WMNP-------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396 (451)
T ss_dssp TSCC-------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhc-------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence 3220 125566677778888888888888899999999999999999999998877 53
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.91 E-value=1.8e-22 Score=206.32 Aligned_cols=343 Identities=11% Similarity=0.005 Sum_probs=223.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH
Q 011743 12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (478)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 91 (478)
++++.+..+....++..+....+.+.++ ++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHH
Confidence 3445555556666666666554555554 5778899999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (478)
Q Consensus 92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~ 171 (478)
.+++.+++..... ..+.+.++++|++.|+|.+...+...++++|.+|+++ |++++++.
T Consensus 101 ~~~~~~~~~~~~~----------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 158 (438)
T 3o7q_A 101 YALGAALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLA 158 (438)
T ss_dssp HHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHH
T ss_pred HHHHHHHHHhccc----------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHH
Confidence 9999988843221 1278899999999999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhh-ccch-------------------------hHHHHHHHHHHHHHHHHHHHhcCcceeecCC
Q 011743 172 LFATTLAAMIGVTAIVYVF-IDQG-------------------------WWLGFLISSVATLIGLIALAIGKPFYRIQQP 225 (478)
Q Consensus 172 ~~~~~~g~~~~p~i~~~l~-~~~~-------------------------~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~ 225 (478)
....++|..++|.+++++. +..+ |++.|++.++..++..+..++.+.+ +.++
T Consensus 159 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p--~~~~ 236 (438)
T 3o7q_A 159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP--ALQS 236 (438)
T ss_dssp HHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCC--cccc
Confidence 9999999999999999887 5444 9999987776655554444432211 1110
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhccCcccccCCCCccchhhhhccCCCCCCCCCCcccccchhhHH
Q 011743 226 GESPLVRVAQVIVVAIKNRKLSLPDNPEELYEINKIERVGTEERIPHTNQFRCLDKAAIVPKDSTAAAPWRVCTVTQVEE 305 (478)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 305 (478)
+.++ . +.+ .....++.+ +-.
T Consensus 237 ~~~~------------------~-~~~-------------------~~~~~~~~~----------------------~~~ 256 (438)
T 3o7q_A 237 DNHS------------------D-AKQ-------------------GSFSASLSR----------------------LAR 256 (438)
T ss_dssp TCCC------------------C-SST-------------------TSHHHHHHH----------------------HTT
T ss_pred cccc------------------c-ccc-------------------cchhhhHHH----------------------HHh
Confidence 0000 0 000 000000000 000
Q ss_pred HHHHHHH-HHHHHHHHHHHHhHhhcchhh-hhhhcccCCCCCCcccCCCCccCchhHHHHHHHHhhhhHHHHHhhhhcCC
Q 011743 306 VKILARM-MPILASTIIMNTCLAQLQTLS-VTQGAYMDPRLGSIKVPTPSIPVLPLLFMAILIPIYEFLFVPFARKITGH 383 (478)
Q Consensus 306 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~r~~~~ 383 (478)
.+.++.. +..++....+.... .+.+.+ ..+..+.+ ....+.+.....+..++..++.+++.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~------- 322 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACW-SYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWLISRF------- 322 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------
T ss_pred ChHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 1111111 22222222222222 222223 32222222 11223444455566666676666655543
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCcchhH
Q 011743 384 PAGITQLQRVGVGLVLSVISMTIAGFVEVKRRNAFNQSPPKQISLFWLSFQYCIFGIADMFTFVGLLEFFYKEAPAGMRT 463 (478)
Q Consensus 384 ~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ge~~~~p~~~~~~~~~aP~~~~g 463 (478)
++++.+.++.++.+++++...+. .+.+ ....+++.+++.....|..+++..+..|++ ++
T Consensus 323 ----~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 381 (438)
T 3o7q_A 323 ----APHKVLAAYALIAMALCLISAFA---------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK 381 (438)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC---------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHc---------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc
Confidence 34455677777777766655543 2222 344557888899999999999999999977 88
Q ss_pred HHHHHHHHHhhcc
Q 011743 464 LLLHLHFCHCHLA 476 (478)
Q Consensus 464 ~~~g~~~~~~~lg 476 (478)
.++++.. ...+|
T Consensus 382 ~~~~~~~-~~~~g 393 (438)
T 3o7q_A 382 YGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHHHH-HTTHH
T ss_pred chhhHHH-HHHHH
Confidence 8888776 33343
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=7e-23 Score=205.47 Aligned_cols=167 Identities=11% Similarity=0.074 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 011743 18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV 97 (478)
Q Consensus 18 ~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 97 (478)
+.+.+..++..+......+.++.+ .+++|.++.+.+++.+.+.+...++.++.|+++|| +||||++..+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHH
Confidence 445566667777766666666654 67899999999999999999999999999999999 8999999999999999998
Q ss_pred HHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHH
Q 011743 98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL 177 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (478)
++..+. +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.....++
T Consensus 81 ~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 81 VAVTTS-------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV 135 (375)
T ss_dssp HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 888765 78889999999999999999999999999999888 99999999999999
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 011743 178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (478)
Q Consensus 178 g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~ 211 (478)
|..++|.+++++.+..+|++.|++.++..++..+
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999998888999999987776554443
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.85 E-value=1.8e-20 Score=194.68 Aligned_cols=154 Identities=14% Similarity=0.107 Sum_probs=116.2
Q ss_pred chhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHH
Q 011743 49 DIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY 128 (478)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (478)
+..+.+++.+++.++..++++++|+++|| +|||+++.++.+++.++.++++.+........... .-...-..+.+.++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-TVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-SCCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-HHHHHHhhhHHHHH
Confidence 34567889999999999999999999999 89999999999999999998875321000000000 00000023788999
Q ss_pred HHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc--------chhHHHHH
Q 011743 129 GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID--------QGWWLGFL 200 (478)
Q Consensus 129 ~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~--------~~~~~~f~ 200 (478)
++|+++|+|.|+..+..+++++|..|+++ |++..++...+..+|..+++.++..+... .+|+..+.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 99999999999999999999999999887 99999999999999999888877655432 35777766
Q ss_pred HHHHHHHHHH
Q 011743 201 ISSVATLIGL 210 (478)
Q Consensus 201 i~~~~~~~~~ 210 (478)
+..+..++..
T Consensus 205 ~~~~~~~~~~ 214 (491)
T 4gc0_A 205 SECIPALLFL 214 (491)
T ss_dssp TTHHHHHHHH
T ss_pred hhhhhhhhhh
Confidence 6555444333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.80 E-value=1.1e-20 Score=192.91 Aligned_cols=168 Identities=9% Similarity=-0.046 Sum_probs=119.4
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHH
Q 011743 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (478)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 94 (478)
|..+.+....++..+++..+.++++.|+++++|++..++|++.+.+.++..+++++.|+++|| +||||++.++..+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence 456666666677777777778999999999999999999999999999999999999999999 8999999999887765
Q ss_pred HHHHH---HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743 95 SLVML---TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (478)
Q Consensus 95 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~ 171 (478)
+...+ ..+.. ....++.++.+.+++.|...+...+...++.++.. ++++..++..
T Consensus 86 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~ 143 (417)
T 2cfq_A 86 MFAPFFIFIFGPL------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRA 143 (417)
T ss_dssp CHHHHHHHTHHHH------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCHHHH
T ss_pred HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccchHHH
Confidence 33211 11110 00112344555555555544444444444433211 1256667777
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 011743 172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVAT 206 (478)
Q Consensus 172 ~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~ 206 (478)
+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 144 ~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 144 RMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp SSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 77788999999999998876 68999998766553
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.50 E-value=9.7e-14 Score=141.78 Aligned_cols=178 Identities=12% Similarity=0.068 Sum_probs=152.2
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhcc--chhHHHHHHHHHH
Q 011743 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL--SRFATCLVFGTLE 92 (478)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Gr~~~~~~~~~~~ 92 (478)
|..+.+++..++..++++++..+++.|+++.+|++..+++.+.+...++..++.++.|+++|| + |||+.+.++..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 567778888888889999999999999999999999999999999999999999999999999 8 9999988887776
Q ss_pred H-HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743 93 V-LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (478)
Q Consensus 93 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~ 171 (478)
. ++.+++.... ..+.+.+.+..++.|++.+...+...+++.|.+|+++ |++++++.
T Consensus 331 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~ 387 (451)
T 1pw4_A 331 VTIATIVYWMNP-----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT 387 (451)
T ss_dssp HHHHHHHTTSCC-----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred HHHHHHHHHHhc-----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHH
Confidence 6 5554443321 1256667777888899888888888899999999887 99999999
Q ss_pred HHHHHH-HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011743 172 LFATTL-AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG 216 (478)
Q Consensus 172 ~~~~~~-g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 216 (478)
....++ |..++|.+.|++.+..||+..|++.+++.+++.+..+..
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999998899999999888877776665543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.36 E-value=6.9e-12 Score=127.53 Aligned_cols=169 Identities=14% Similarity=0.050 Sum_probs=136.8
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHH-cccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743 15 RACTFVFVLSALENMGFIANGISMVLY-FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (478)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~v~~~l~~y-l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 93 (478)
|..+..++..++....++++..+++.| +++.+|++..+++...+.+.++..++.+++|+++|| +|||+++..+.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 456777777788888888888999999 888889999999999999999999999999999999 899999999998888
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHH
Q 011743 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (478)
Q Consensus 94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~ 173 (478)
++.+++.... +... .+..++.+++.+...|...++..|.+|++ ++.+.++..
T Consensus 337 ~~~~~~~~~~-------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~- 388 (438)
T 3o7q_A 337 ALCLISAFAG-------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV- 388 (438)
T ss_dssp HHHHHHHHCC-------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-
T ss_pred HHHHHHHHcC-------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-
Confidence 8877666543 3333 34457888999999999999989998843 345555544
Q ss_pred HHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHH
Q 011743 174 ATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIA 212 (478)
Q Consensus 174 ~~~~g~~~~p~i~~~l~~~~~-~~~~f~i~~~~~~~~~~~ 212 (478)
...+|..++|.+.|++.+..| ++..|++.+++.++..+.
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 556999999999999999888 999998776655544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=2.1e-12 Score=131.37 Aligned_cols=176 Identities=10% Similarity=-0.046 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHcccccCC---chhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHH
Q 011743 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHF---DIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (478)
Q Consensus 17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~---~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 93 (478)
.+...+..++....++....+++.|+.+.++. +..+.+....+..+...++.++.|+++|| +|||+++..+.++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHH
Confidence 44444443444445554555678888766653 34455777777778888899999999999 899999998888877
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH-H
Q 011743 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY-L 172 (478)
Q Consensus 94 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~-~ 172 (478)
++.+++.... +.+.+++...+.+++.+...+...+++.|.+|++. |++++++. .
T Consensus 301 ~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~ 355 (417)
T 2cfq_A 301 VRIIGSSFAT-------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFC 355 (417)
T ss_dssp HHHHHHTTCC-------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHT
T ss_pred HHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHH
Confidence 7655554322 44555666666777777666777889999999766 88888884 5
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP 218 (478)
Q Consensus 173 ~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 218 (478)
...++|..++|.++|++.+..|++..|.+.+++.+++.++.+...+
T Consensus 356 ~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 356 FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp TTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6778999999999999988889999999888877777666554433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.22 E-value=3.1e-11 Score=124.92 Aligned_cols=184 Identities=9% Similarity=-0.027 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHH-----HHHHH
Q 011743 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL-----VFGTL 91 (478)
Q Consensus 17 ~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-----~~~~~ 91 (478)
.+.+.+...+....+.....+++.|..+.++.+..+.+.+.....+...++.++.|+++|| +|||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHH
Confidence 4445555666666677777888999999899888888999999999999999999999999 89987655 67777
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (478)
Q Consensus 92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~ 171 (478)
.+++.+++....... +. ....+.+.+++..++.+++.+...|...+++.|.+|+++ |+++.++.
T Consensus 364 ~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 427 (491)
T 4aps_A 364 AGLSFLLMAIPGALY-------GT---SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMW 427 (491)
T ss_dssp HHHHHTTTHHHHHHC-------CC---CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHH
T ss_pred HHHHHHHHHHHHHhc-------CC---CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHH
Confidence 777766655532100 00 001255667788889999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743 172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP 218 (478)
Q Consensus 172 ~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 218 (478)
+...++|..++|.+.+++.+ .++...|.+.+++.+++.+..++..+
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 47777888777777666666655544
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.03 E-value=3.2e-09 Score=109.59 Aligned_cols=177 Identities=10% Similarity=-0.073 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 011743 20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML 99 (478)
Q Consensus 20 l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~ 99 (478)
......+..+..+....+...++.+..+.+............+...++.++++++.|| +|||+.++.+.....++.+.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l 359 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSL 359 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHH
Confidence 3333334434333333344445566788888888888888889999999999999999 899999999998888877666
Q ss_pred HHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhcc-ccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHH
Q 011743 100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGC-GGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA 178 (478)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~-g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 178 (478)
...... .......++...+...+. ....|....+.+|.+|.+. |+++.++.....++|
T Consensus 360 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~ 418 (491)
T 4gc0_A 360 GTAFYT---------------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLA 418 (491)
T ss_dssp HHHHHT---------------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHH
T ss_pred HHHHhc---------------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHH
Confidence 544310 001112222222222222 2234566788999999998 999999999999999
Q ss_pred HHHHHHHHHhhhc------cchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011743 179 AMIGVTAIVYVFI------DQGWWLGFLISSVATLIGLIALAIGKP 218 (478)
Q Consensus 179 ~~~~p~i~~~l~~------~~~~~~~f~i~~~~~~~~~~~~~~~~~ 218 (478)
+.+++.+.+.+.+ ..++...|++.+++.+++.+..++..|
T Consensus 419 ~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 419 NYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 9988887766543 234556777777777777766655544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.88 E-value=3.7e-10 Score=112.43 Aligned_cols=162 Identities=9% Similarity=-0.070 Sum_probs=128.0
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhhHhHHHHHHHHHHHHHhhHHHHHhhhccchhHHHHHHHHH-HH
Q 011743 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL-EV 93 (478)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~v~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~-~~ 93 (478)
|..+...+..++....++++..+++.|+++++|.++.+++.+.....++..++.++.|+++|| +|++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence 456677777788888888888999999998899999999999999999999999999999999 7873 2333333 23
Q ss_pred HHHHH--HHHHhhcccCCCCCCCCCccccchhHHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHH
Q 011743 94 LSLVM--LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (478)
Q Consensus 94 i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~ 171 (478)
.+..+ ..... ..+.+.+++..++.+++.+...+...+++.|.+| ++ |++++++.
T Consensus 276 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~ 331 (375)
T 2gfp_A 276 AGLLMWIPDWFG-----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALV 331 (375)
T ss_dssp TSSSSSHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHH
T ss_pred HHHHHHHHhhhc-----------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHH
Confidence 33221 11111 1255666778888999999999999999999987 55 89999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 011743 172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISS 203 (478)
Q Consensus 172 ~~~~~~g~~~~p~i~~~l~~~~~~~~~f~i~~ 203 (478)
....++|..++|.+.+.+.+..+|...+++.+
T Consensus 332 ~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 332 GGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999887777888777643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.19 E-value=4.7e-07 Score=94.13 Aligned_cols=150 Identities=11% Similarity=-0.001 Sum_probs=96.3
Q ss_pred hHhHHHHHHHHHHHHHhhHHHHHh----hhccch----hHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccchh
Q 011743 52 GASNTLTNFFGSTFLLCLVGGFIS----DTYLSR----FATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI 123 (478)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~G~la----Dr~~Gr----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (478)
..+.+.....+...+..++.+++. || .|+ ++.+.++.++.+++.+++..... .. +.+ ...+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~----~~~---~~~~ 404 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIER-MGVKLTALRKMGAGIAITGLSWIVVGTIQL---MM----DGG---SALS 404 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTT---TT----TTT---CCCC
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHH---Hh----cCC---CCcC
Confidence 345555555555666666666654 44 343 34566677777776665544310 00 000 0125
Q ss_pred HHHHHHHHHHHHhccccccccccccccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc--hh------
Q 011743 124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ--GW------ 195 (478)
Q Consensus 124 ~~~~~~~~~l~gig~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~--~~------ 195 (478)
.+.+++..++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++|.+.+.+.+.. +|
T Consensus 405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~ 478 (524)
T 2xut_A 405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGM 478 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 5667778889999999999999999999999988 999999999999999999999999887632 23
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhcCc
Q 011743 196 ---WLGFLISSVATLIGLIALAIGKP 218 (478)
Q Consensus 196 ---~~~f~i~~~~~~~~~~~~~~~~~ 218 (478)
+..|++.+++.+++.++.++..+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 479 SVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33366666666666655554433
Done!