Query 011744
Match_columns 478
No_of_seqs 179 out of 1628
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:45:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00429 beta-adaptin; Provisi 100.0 7.9E-79 1.7E-83 633.9 49.2 466 1-472 60-527 (746)
2 KOG1062 Vesicle coat complex A 100.0 2.1E-71 4.6E-76 551.6 34.2 455 2-469 63-560 (866)
3 KOG1077 Vesicle coat complex A 100.0 5E-70 1.1E-74 532.6 34.5 461 2-471 67-568 (938)
4 KOG1061 Vesicle coat complex A 100.0 3.2E-68 6.9E-73 531.1 37.8 467 1-471 41-508 (734)
5 PF01602 Adaptin_N: Adaptin N 100.0 3.3E-68 7.1E-73 555.9 36.9 461 1-470 34-503 (526)
6 KOG1060 Vesicle coat complex A 100.0 5.5E-66 1.2E-70 510.2 34.0 455 1-470 63-551 (968)
7 KOG1059 Vesicle coat complex A 100.0 2.6E-54 5.6E-59 424.1 34.1 444 2-453 65-529 (877)
8 COG5096 Vesicle coat complex, 100.0 4.6E-48 1E-52 394.3 34.6 452 1-456 47-524 (757)
9 KOG1058 Vesicle coat complex C 100.0 3.7E-44 8.1E-49 353.8 28.2 400 1-419 48-467 (948)
10 KOG1078 Vesicle coat complex C 100.0 4E-33 8.8E-38 277.9 30.9 443 6-469 61-511 (865)
11 COG5240 SEC21 Vesicle coat com 100.0 2.4E-32 5.2E-37 263.3 31.1 446 7-470 63-535 (898)
12 PF01602 Adaptin_N: Adaptin N 99.7 2.1E-14 4.5E-19 150.3 27.3 414 13-443 83-516 (526)
13 KOG0166 Karyopherin (importin) 99.7 3E-14 6.6E-19 140.8 23.8 326 49-376 69-435 (514)
14 PRK09687 putative lyase; Provi 99.6 2.6E-14 5.7E-19 135.2 20.1 251 47-372 24-277 (280)
15 PRK13800 putative oxidoreducta 99.6 3.4E-13 7.5E-18 148.2 26.8 271 48-372 623-894 (897)
16 PTZ00429 beta-adaptin; Provisi 99.6 4.8E-12 1E-16 133.6 33.0 391 49-455 35-437 (746)
17 PRK13800 putative oxidoreducta 99.6 2.8E-12 6E-17 141.1 29.3 288 59-411 607-895 (897)
18 KOG0212 Uncharacterized conser 99.5 3.2E-11 6.9E-16 118.0 31.1 363 13-378 4-407 (675)
19 PRK09687 putative lyase; Provi 99.5 1.8E-12 3.9E-17 122.8 22.1 221 13-268 27-249 (280)
20 PLN03200 cellulose synthase-in 99.5 1E-10 2.2E-15 132.7 38.6 439 10-456 232-769 (2102)
21 PLN03200 cellulose synthase-in 99.5 3E-11 6.5E-16 137.0 33.2 417 13-439 408-893 (2102)
22 KOG2171 Karyopherin (importin) 99.5 9.5E-10 2E-14 116.6 39.4 436 10-454 5-507 (1075)
23 KOG2023 Nuclear transport rece 99.5 2.8E-11 6.1E-16 120.4 26.2 272 198-475 174-527 (885)
24 KOG2023 Nuclear transport rece 99.4 2E-11 4.3E-16 121.5 19.1 371 64-463 376-786 (885)
25 KOG2171 Karyopherin (importin) 99.4 2.3E-09 5.1E-14 113.7 34.6 410 50-467 8-477 (1075)
26 KOG1058 Vesicle coat complex C 99.4 5.2E-11 1.1E-15 120.0 21.3 360 49-432 60-443 (948)
27 COG5064 SRP1 Karyopherin (impo 99.3 8.6E-11 1.9E-15 108.5 17.7 295 81-377 114-443 (526)
28 KOG0213 Splicing factor 3b, su 99.3 4.3E-09 9.3E-14 106.2 30.8 394 17-453 449-872 (1172)
29 KOG0166 Karyopherin (importin) 99.3 5.4E-10 1.2E-14 111.0 23.3 297 11-309 68-397 (514)
30 KOG1060 Vesicle coat complex A 99.2 5E-08 1.1E-12 99.4 30.0 397 50-468 39-474 (968)
31 PF10508 Proteasom_PSMB: Prote 99.1 3.3E-07 7.1E-12 94.6 33.7 380 51-451 43-465 (503)
32 PF10508 Proteasom_PSMB: Prote 99.1 1.9E-07 4.1E-12 96.4 28.2 319 10-353 78-428 (503)
33 KOG1059 Vesicle coat complex A 99.0 8.3E-07 1.8E-11 90.0 29.7 372 5-393 104-505 (877)
34 PF12717 Cnd1: non-SMC mitotic 98.8 1.6E-07 3.4E-12 83.3 15.7 114 59-176 1-116 (178)
35 COG5181 HSH155 U2 snRNP splice 98.8 2.2E-07 4.7E-12 92.4 17.4 364 47-452 282-676 (975)
36 KOG1241 Karyopherin (importin) 98.8 1.1E-05 2.5E-10 82.5 28.5 363 81-465 319-724 (859)
37 COG5240 SEC21 Vesicle coat com 98.8 4.2E-06 9.2E-11 82.9 24.5 290 108-413 254-553 (898)
38 KOG1062 Vesicle coat complex A 98.7 8.2E-06 1.8E-10 84.0 25.8 315 87-415 76-414 (866)
39 COG5064 SRP1 Karyopherin (impo 98.7 2.2E-07 4.9E-12 86.3 12.7 221 47-270 158-399 (526)
40 KOG2259 Uncharacterized conser 98.6 7.5E-06 1.6E-10 82.5 22.4 340 43-391 118-525 (823)
41 KOG1078 Vesicle coat complex C 98.6 1.6E-05 3.4E-10 81.8 24.3 275 120-411 245-528 (865)
42 KOG1242 Protein containing ada 98.6 1.6E-05 3.5E-10 80.1 23.9 397 2-444 127-557 (569)
43 KOG4224 Armadillo repeat prote 98.6 6.3E-06 1.4E-10 77.6 19.4 352 18-377 56-446 (550)
44 COG1413 FOG: HEAT repeat [Ener 98.6 3.3E-05 7.1E-10 76.0 25.6 258 46-375 43-302 (335)
45 TIGR02270 conserved hypothetic 98.6 9.9E-06 2.1E-10 80.7 21.7 150 10-188 55-205 (410)
46 KOG1824 TATA-binding protein-i 98.6 0.00029 6.3E-09 74.1 32.6 332 4-341 249-681 (1233)
47 TIGR02270 conserved hypothetic 98.6 5E-05 1.1E-09 75.7 25.7 188 6-224 12-204 (410)
48 KOG4224 Armadillo repeat prote 98.6 2.2E-06 4.8E-11 80.5 15.0 325 14-342 90-448 (550)
49 KOG0213 Splicing factor 3b, su 98.6 0.00022 4.8E-09 73.1 30.1 436 13-465 640-1118(1172)
50 PF13646 HEAT_2: HEAT repeats; 98.5 5.1E-07 1.1E-11 70.0 9.0 86 48-145 1-88 (88)
51 COG5215 KAP95 Karyopherin (imp 98.5 5.6E-05 1.2E-09 75.2 24.8 417 14-454 226-714 (858)
52 KOG0212 Uncharacterized conser 98.5 0.00017 3.6E-09 71.9 27.8 179 87-269 49-237 (675)
53 COG5096 Vesicle coat complex, 98.5 0.0002 4.3E-09 75.3 29.4 171 48-226 20-194 (757)
54 PF05804 KAP: Kinesin-associat 98.5 0.00021 4.5E-09 75.6 29.5 320 48-416 292-653 (708)
55 COG1413 FOG: HEAT repeat [Ener 98.5 6.1E-05 1.3E-09 74.1 24.4 110 10-136 44-153 (335)
56 KOG1824 TATA-binding protein-i 98.4 0.00025 5.4E-09 74.6 27.2 299 46-358 817-1151(1233)
57 PF04826 Arm_2: Armadillo-like 98.4 2.3E-05 4.9E-10 73.0 17.8 180 86-270 17-206 (254)
58 KOG1242 Protein containing ada 98.4 0.00042 9E-09 70.2 27.5 327 46-378 96-445 (569)
59 KOG1061 Vesicle coat complex A 98.4 2.1E-05 4.5E-10 81.2 18.4 172 48-227 15-189 (734)
60 PF12717 Cnd1: non-SMC mitotic 98.4 5.8E-06 1.3E-10 73.3 12.9 157 253-410 1-174 (178)
61 KOG1020 Sister chromatid cohes 98.4 0.00086 1.9E-08 74.0 30.8 123 49-175 819-945 (1692)
62 KOG1241 Karyopherin (importin) 98.3 0.0057 1.2E-07 63.4 36.2 404 50-466 60-544 (859)
63 KOG0915 Uncharacterized conser 98.3 0.0037 8.1E-08 69.3 33.9 272 4-280 813-1171(1702)
64 KOG0211 Protein phosphatase 2A 98.3 0.00017 3.8E-09 76.4 22.6 325 44-378 119-509 (759)
65 COG5215 KAP95 Karyopherin (imp 98.2 0.00026 5.6E-09 70.6 21.0 357 55-418 14-440 (858)
66 KOG2259 Uncharacterized conser 98.2 0.0018 3.9E-08 65.9 26.0 258 196-469 196-528 (823)
67 PF05804 KAP: Kinesin-associat 98.2 0.0014 3E-08 69.5 26.2 325 10-340 291-649 (708)
68 cd00256 VATPase_H VATPase_H, r 98.1 0.00065 1.4E-08 67.7 22.0 283 163-452 103-426 (429)
69 KOG1077 Vesicle coat complex A 98.1 0.018 4E-07 59.3 31.1 329 61-407 92-466 (938)
70 PF04826 Arm_2: Armadillo-like 98.1 0.00027 5.8E-09 65.9 16.6 174 50-228 16-206 (254)
71 COG5181 HSH155 U2 snRNP splice 98.0 0.0055 1.2E-07 62.0 25.3 437 3-454 435-915 (975)
72 KOG0211 Protein phosphatase 2A 98.0 0.01 2.2E-07 63.4 28.9 372 76-452 232-626 (759)
73 KOG1943 Beta-tubulin folding c 98.0 0.045 9.8E-07 59.2 34.3 413 4-453 332-789 (1133)
74 PF13646 HEAT_2: HEAT repeats; 97.9 7.4E-05 1.6E-09 57.7 8.7 85 12-106 2-88 (88)
75 KOG1020 Sister chromatid cohes 97.9 0.033 7.2E-07 62.2 30.9 326 85-470 820-1167(1692)
76 cd00020 ARM Armadillo/beta-cat 97.9 3.9E-05 8.4E-10 62.8 7.1 102 47-148 8-119 (120)
77 KOG1943 Beta-tubulin folding c 97.9 0.011 2.5E-07 63.5 26.5 249 76-362 336-596 (1133)
78 KOG1240 Protein kinase contain 97.8 0.0043 9.3E-08 67.3 22.5 279 82-379 423-727 (1431)
79 PF05918 API5: Apoptosis inhib 97.8 0.016 3.4E-07 59.6 25.7 132 10-146 24-159 (556)
80 PF12348 CLASP_N: CLASP N term 97.8 0.00066 1.4E-08 62.8 14.8 183 90-274 16-211 (228)
81 PF12755 Vac14_Fab1_bd: Vacuol 97.8 7.5E-05 1.6E-09 58.5 6.6 67 75-141 21-89 (97)
82 cd00020 ARM Armadillo/beta-cat 97.7 0.00015 3.2E-09 59.3 7.0 70 82-151 8-80 (120)
83 PF12348 CLASP_N: CLASP N term 97.6 0.0021 4.7E-08 59.3 14.3 179 207-385 16-214 (228)
84 KOG1240 Protein kinase contain 97.5 0.0099 2.1E-07 64.6 19.9 237 24-270 438-726 (1431)
85 KOG0414 Chromosome condensatio 97.5 0.00098 2.1E-08 72.0 11.3 140 10-151 920-1066(1251)
86 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00018 3.9E-09 50.1 3.4 52 95-146 1-54 (55)
87 KOG0567 HEAT repeat-containing 97.4 0.052 1.1E-06 49.7 19.7 91 48-150 38-130 (289)
88 KOG0915 Uncharacterized conser 97.4 0.072 1.6E-06 59.6 24.1 296 57-396 1009-1327(1702)
89 KOG0168 Putative ubiquitin fus 97.4 0.048 1E-06 57.5 21.6 223 48-272 169-416 (1051)
90 KOG0414 Chromosome condensatio 97.3 0.0037 7.9E-08 67.8 13.3 148 56-210 933-1083(1251)
91 PF14500 MMS19_N: Dos2-interac 97.3 0.14 2.9E-06 48.2 22.2 232 86-356 4-254 (262)
92 PF05918 API5: Apoptosis inhib 97.3 0.13 2.8E-06 53.1 23.4 121 58-187 34-159 (556)
93 PF13513 HEAT_EZ: HEAT-like re 97.2 0.001 2.2E-08 46.2 5.7 49 60-108 1-55 (55)
94 KOG2759 Vacuolar H+-ATPase V1 97.2 0.26 5.6E-06 48.3 29.3 357 56-451 60-438 (442)
95 PF14764 SPG48: AP-5 complex s 97.2 0.3 6.5E-06 48.9 27.2 97 364-462 284-405 (459)
96 PF12460 MMS19_C: RNAPII trans 97.2 0.031 6.7E-07 56.6 18.3 227 24-281 163-406 (415)
97 PF02985 HEAT: HEAT repeat; I 97.1 0.0009 1.9E-08 40.3 3.8 29 82-110 1-29 (31)
98 PF12460 MMS19_C: RNAPII trans 97.1 0.41 8.9E-06 48.5 28.2 208 162-392 190-409 (415)
99 KOG4413 26S proteasome regulat 97.1 0.28 6E-06 46.4 24.1 210 17-226 90-332 (524)
100 KOG0946 ER-Golgi vesicle-tethe 97.0 0.68 1.5E-05 48.9 26.0 133 17-151 31-197 (970)
101 KOG2062 26S proteasome regulat 97.0 0.012 2.7E-07 60.8 12.7 126 12-147 522-651 (929)
102 KOG1525 Sister chromatid cohes 97.0 0.24 5.1E-06 56.0 23.7 161 290-452 236-406 (1266)
103 KOG1517 Guanine nucleotide bin 96.8 0.04 8.6E-07 59.3 15.5 137 10-151 513-673 (1387)
104 PF12755 Vac14_Fab1_bd: Vacuol 96.8 0.0032 7E-08 49.3 5.8 78 97-174 2-81 (97)
105 KOG1248 Uncharacterized conser 96.8 1.2 2.6E-05 49.2 29.3 295 79-380 565-901 (1176)
106 smart00638 LPD_N Lipoprotein N 96.8 0.021 4.5E-07 60.6 13.5 121 21-147 409-543 (574)
107 KOG0567 HEAT repeat-containing 96.7 0.016 3.4E-07 53.0 10.0 91 47-149 188-280 (289)
108 KOG1525 Sister chromatid cohes 96.7 1.2 2.6E-05 50.7 26.6 195 198-396 259-472 (1266)
109 PF12830 Nipped-B_C: Sister ch 96.7 0.029 6.3E-07 50.0 11.7 80 47-127 9-90 (187)
110 COG5098 Chromosome condensatio 96.6 0.023 4.9E-07 58.5 11.3 129 21-149 274-415 (1128)
111 KOG1820 Microtubule-associated 96.6 0.063 1.4E-06 57.9 15.2 193 77-271 249-445 (815)
112 PF12719 Cnd3: Nuclear condens 96.4 0.22 4.8E-06 48.0 17.1 94 284-377 35-143 (298)
113 KOG1949 Uncharacterized conser 96.4 0.33 7.1E-06 50.5 18.3 207 205-414 181-405 (1005)
114 KOG4500 Rho/Rac GTPase guanine 96.2 0.73 1.6E-05 45.4 18.8 262 10-272 224-522 (604)
115 KOG1822 Uncharacterized conser 96.2 1.1 2.3E-05 52.0 22.4 225 43-272 873-1130(2067)
116 PF12719 Cnd3: Nuclear condens 96.2 0.17 3.6E-06 48.9 14.7 106 45-150 26-144 (298)
117 COG5098 Chromosome condensatio 96.1 0.057 1.2E-06 55.7 11.2 138 12-151 895-1039(1128)
118 PF02985 HEAT: HEAT repeat; I 96.1 0.012 2.6E-07 35.3 4.0 29 121-149 1-29 (31)
119 KOG1991 Nuclear transport rece 96.0 2.9 6.4E-05 45.5 27.8 113 56-170 428-556 (1010)
120 KOG0168 Putative ubiquitin fus 96.0 1.7 3.8E-05 46.4 21.4 176 202-378 171-365 (1051)
121 PF14664 RICTOR_N: Rapamycin-i 96.0 0.51 1.1E-05 46.8 17.1 144 5-150 19-177 (371)
122 COG5116 RPN2 26S proteasome re 95.9 0.071 1.5E-06 53.8 10.5 125 15-147 522-648 (926)
123 KOG1248 Uncharacterized conser 95.7 4.4 9.4E-05 45.1 25.2 208 174-382 629-861 (1176)
124 KOG1293 Proteins containing ar 95.5 1.3 2.8E-05 45.9 18.0 173 53-226 338-532 (678)
125 PF10363 DUF2435: Protein of u 95.5 0.12 2.5E-06 40.1 8.4 66 86-151 8-74 (92)
126 smart00638 LPD_N Lipoprotein N 95.5 1.1 2.3E-05 47.6 18.6 220 60-331 340-569 (574)
127 KOG2062 26S proteasome regulat 95.4 0.07 1.5E-06 55.5 8.6 121 18-145 564-692 (929)
128 KOG1949 Uncharacterized conser 95.4 0.71 1.5E-05 48.1 15.6 139 44-188 172-329 (1005)
129 PF01347 Vitellogenin_N: Lipop 95.3 0.05 1.1E-06 58.3 8.0 118 21-147 447-587 (618)
130 PF14664 RICTOR_N: Rapamycin-i 95.2 1.9 4.1E-05 42.8 18.0 206 248-454 33-272 (371)
131 PF10363 DUF2435: Protein of u 95.1 0.24 5.2E-06 38.3 8.8 79 313-394 5-86 (92)
132 KOG0413 Uncharacterized conser 95.0 3.9 8.5E-05 44.5 20.1 131 22-153 944-1077(1529)
133 KOG2213 Apoptosis inhibitor 5/ 95.0 4 8.6E-05 39.9 18.8 217 248-468 32-287 (460)
134 COG5218 YCG1 Chromosome conden 94.8 2.3 5E-05 43.6 17.0 122 27-149 30-161 (885)
135 KOG2032 Uncharacterized conser 94.8 5.2 0.00011 40.3 19.2 129 49-177 261-403 (533)
136 KOG2025 Chromosome condensatio 94.8 6.5 0.00014 41.4 24.1 100 123-222 88-188 (892)
137 KOG2160 Armadillo/beta-catenin 94.8 1.9 4.1E-05 41.6 15.8 138 318-455 131-286 (342)
138 PF13251 DUF4042: Domain of un 94.7 0.53 1.1E-05 41.5 11.2 150 97-271 2-176 (182)
139 KOG4413 26S proteasome regulat 94.7 4.1 9E-05 38.8 25.6 149 75-226 76-242 (524)
140 KOG2274 Predicted importin 9 [ 94.5 1.6 3.5E-05 46.9 15.8 273 174-454 463-783 (1005)
141 PF05536 Neurochondrin: Neuroc 94.4 7.6 0.00017 40.8 25.9 237 7-271 3-263 (543)
142 PF05004 IFRD: Interferon-rela 94.3 4.9 0.00011 38.9 18.0 98 11-108 45-158 (309)
143 KOG2274 Predicted importin 9 [ 94.3 9.6 0.00021 41.3 25.6 297 77-380 445-783 (1005)
144 PF12830 Nipped-B_C: Sister ch 94.2 3.7 8.1E-05 36.5 15.9 152 310-473 7-166 (187)
145 KOG2160 Armadillo/beta-catenin 94.0 1.3 2.8E-05 42.7 12.9 137 200-338 126-280 (342)
146 PF08713 DNA_alkylation: DNA a 94.0 0.28 6E-06 44.6 8.4 132 12-152 54-187 (213)
147 PF03224 V-ATPase_H_N: V-ATPas 94.0 1.2 2.6E-05 43.2 13.2 172 132-308 69-272 (312)
148 PF12765 Cohesin_HEAT: HEAT re 93.9 0.082 1.8E-06 34.2 3.3 40 104-143 2-41 (42)
149 PF08167 RIX1: rRNA processing 93.8 1.2 2.5E-05 38.8 11.4 125 120-280 25-154 (165)
150 PF01347 Vitellogenin_N: Lipop 93.6 10 0.00022 40.7 20.7 137 75-225 429-587 (618)
151 KOG1991 Nuclear transport rece 93.5 14 0.0003 40.5 34.0 169 258-426 390-589 (1010)
152 KOG2956 CLIP-associating prote 93.5 6.8 0.00015 39.3 16.9 183 92-281 298-490 (516)
153 KOG2032 Uncharacterized conser 93.5 9.6 0.00021 38.5 22.8 146 80-225 257-414 (533)
154 PF11698 V-ATPase_H_C: V-ATPas 93.4 0.14 3E-06 41.4 4.6 92 357-451 18-115 (119)
155 KOG0946 ER-Golgi vesicle-tethe 93.2 7.7 0.00017 41.4 17.7 178 198-395 22-218 (970)
156 KOG1820 Microtubule-associated 93.1 7.6 0.00016 42.5 18.3 174 203-380 258-446 (815)
157 PF05004 IFRD: Interferon-rela 92.9 9.4 0.0002 36.9 18.9 186 84-270 46-258 (309)
158 KOG1967 DNA repair/transcripti 92.9 1.6 3.5E-05 47.0 12.6 172 51-227 801-982 (1030)
159 KOG4653 Uncharacterized conser 92.9 16 0.00035 39.5 20.3 70 83-152 729-800 (982)
160 KOG0413 Uncharacterized conser 92.9 17 0.00038 39.8 26.9 122 290-413 945-1071(1529)
161 KOG2956 CLIP-associating prote 92.9 4.3 9.2E-05 40.7 14.6 174 288-465 299-491 (516)
162 COG5116 RPN2 26S proteasome re 92.7 0.39 8.4E-06 48.8 7.3 114 18-134 561-676 (926)
163 PF11935 DUF3453: Domain of un 92.1 3.6 7.9E-05 38.1 12.8 128 89-226 1-144 (239)
164 KOG1992 Nuclear export recepto 92.0 21 0.00045 38.6 31.5 74 232-305 225-322 (960)
165 KOG4653 Uncharacterized conser 91.9 7.4 0.00016 41.9 15.8 175 11-187 729-915 (982)
166 KOG1243 Protein kinase [Genera 91.8 1.6 3.6E-05 45.6 10.8 172 47-225 331-513 (690)
167 PF13001 Ecm29: Proteasome sta 91.8 3.1 6.7E-05 43.2 13.2 129 19-150 295-444 (501)
168 KOG2933 Uncharacterized conser 91.7 2.5 5.4E-05 40.0 10.9 118 27-148 71-198 (334)
169 cd03561 VHS VHS domain family; 91.5 2.8 6E-05 35.0 10.3 86 28-113 19-115 (133)
170 PF08167 RIX1: rRNA processing 91.3 2.8 6.1E-05 36.4 10.6 103 48-152 27-146 (165)
171 PF11698 V-ATPase_H_C: V-ATPas 91.2 0.63 1.4E-05 37.7 5.8 68 82-149 44-115 (119)
172 PF12231 Rif1_N: Rap1-interact 90.9 18 0.0004 36.0 23.0 174 93-268 146-351 (372)
173 PF08389 Xpo1: Exportin 1-like 90.2 4.3 9.4E-05 34.0 10.7 53 95-150 2-55 (148)
174 PF11865 DUF3385: Domain of un 89.5 1.8 4E-05 37.3 7.7 32 40-74 8-39 (160)
175 cd03569 VHS_Hrs_Vps27p VHS dom 89.5 4.8 0.0001 34.0 10.0 80 31-110 26-114 (142)
176 PF12074 DUF3554: Domain of un 89.2 22 0.00047 34.9 16.1 82 27-110 5-90 (339)
177 cd06561 AlkD_like A new struct 89.0 13 0.00028 33.1 13.3 66 84-152 108-173 (197)
178 smart00288 VHS Domain present 89.0 9 0.0002 31.9 11.3 88 23-110 14-111 (133)
179 PF03224 V-ATPase_H_N: V-ATPas 88.9 7.2 0.00016 37.8 12.3 200 58-271 52-271 (312)
180 PF00514 Arm: Armadillo/beta-c 88.9 0.87 1.9E-05 29.0 4.0 28 82-109 13-40 (41)
181 PF00790 VHS: VHS domain; Int 88.6 3.2 6.9E-05 34.9 8.5 94 17-110 13-118 (140)
182 PF00514 Arm: Armadillo/beta-c 88.6 0.92 2E-05 28.9 4.0 30 119-148 11-40 (41)
183 KOG2025 Chromosome condensatio 88.5 37 0.00081 36.1 32.3 89 52-142 91-186 (892)
184 KOG1243 Protein kinase [Genera 88.4 29 0.00062 36.8 16.5 134 17-151 262-400 (690)
185 PF08713 DNA_alkylation: DNA a 88.4 0.75 1.6E-05 41.7 4.9 69 49-117 123-191 (213)
186 KOG1992 Nuclear export recepto 88.4 41 0.00089 36.4 22.3 196 45-271 455-670 (960)
187 KOG1967 DNA repair/transcripti 87.9 4.3 9.4E-05 43.9 10.4 130 241-370 867-1017(1030)
188 KOG2933 Uncharacterized conser 87.7 7.6 0.00016 36.9 10.7 142 198-341 88-235 (334)
189 PF12530 DUF3730: Protein of u 87.5 23 0.00051 32.6 17.2 59 56-114 11-71 (234)
190 KOG2137 Protein kinase [Signal 87.2 14 0.0003 39.2 13.4 203 251-455 284-500 (700)
191 PF10274 ParcG: Parkin co-regu 86.5 6.7 0.00014 34.5 9.3 71 80-150 37-110 (183)
192 PF10274 ParcG: Parkin co-regu 86.4 2.7 5.8E-05 36.9 6.8 52 77-130 76-127 (183)
193 cd03568 VHS_STAM VHS domain fa 86.4 6.4 0.00014 33.3 9.0 80 31-110 22-110 (144)
194 PF01603 B56: Protein phosphat 86.0 33 0.00071 34.7 15.4 160 312-471 134-304 (409)
195 PF13251 DUF4042: Domain of un 84.6 2.5 5.5E-05 37.2 5.8 124 25-150 18-175 (182)
196 PF08506 Cse1: Cse1; InterPro 83.8 9.9 0.00022 37.8 10.3 128 94-222 223-370 (370)
197 KOG2213 Apoptosis inhibitor 5/ 83.5 49 0.0011 32.7 26.2 71 21-91 36-106 (460)
198 KOG2973 Uncharacterized conser 83.3 43 0.00094 32.0 19.3 60 50-111 7-72 (353)
199 PF12074 DUF3554: Domain of un 83.0 49 0.0011 32.4 18.1 88 61-149 2-90 (339)
200 KOG4535 HEAT and armadillo rep 82.9 1.6 3.6E-05 43.6 4.3 129 18-149 21-179 (728)
201 cd07064 AlkD_like_1 A new stru 82.6 29 0.00064 31.3 12.2 65 84-152 118-182 (208)
202 cd03567 VHS_GGA VHS domain fam 82.1 11 0.00023 31.7 8.4 79 31-109 23-115 (139)
203 PF08506 Cse1: Cse1; InterPro 81.7 4.3 9.2E-05 40.3 6.8 49 57-105 319-370 (370)
204 KOG1293 Proteins containing ar 81.2 77 0.0017 33.4 32.5 142 287-432 388-547 (678)
205 PF10521 DUF2454: Protein of u 80.8 16 0.00034 34.8 10.2 74 76-149 114-203 (282)
206 cd06561 AlkD_like A new struct 80.5 5.2 0.00011 35.7 6.5 65 53-117 112-177 (197)
207 PF11865 DUF3385: Domain of un 80.3 23 0.00049 30.6 10.1 33 244-276 13-47 (160)
208 cd08050 TAF6 TATA Binding Prot 80.3 43 0.00094 32.9 13.3 143 5-148 174-339 (343)
209 PF08623 TIP120: TATA-binding 80.0 5 0.00011 34.8 5.8 58 93-151 39-96 (169)
210 KOG4199 Uncharacterized conser 79.6 63 0.0014 31.4 25.5 142 244-386 244-412 (461)
211 KOG2137 Protein kinase [Signal 79.2 91 0.002 33.4 15.5 135 240-376 348-495 (700)
212 PF14500 MMS19_N: Dos2-interac 79.2 57 0.0012 30.7 23.7 44 420-463 206-249 (262)
213 KOG1222 Kinesin associated pro 79.0 79 0.0017 32.2 24.7 85 48-133 306-399 (791)
214 KOG4500 Rho/Rac GTPase guanine 78.9 23 0.00049 35.4 10.4 142 10-151 316-477 (604)
215 cd00256 VATPase_H VATPase_H, r 78.8 79 0.0017 32.1 27.2 329 60-411 52-421 (429)
216 COG5231 VMA13 Vacuolar H+-ATPa 78.1 32 0.00069 33.0 10.8 240 202-448 153-425 (432)
217 KOG1517 Guanine nucleotide bin 78.0 53 0.0011 36.7 13.6 159 257-416 487-672 (1387)
218 smart00567 EZ_HEAT E-Z type HE 77.7 2.7 5.9E-05 24.6 2.6 21 61-81 2-22 (30)
219 COG5110 RPN1 26S proteasome re 76.7 86 0.0019 32.5 13.9 137 47-189 414-556 (881)
220 PF12765 Cohesin_HEAT: HEAT re 76.7 4.1 8.8E-05 26.3 3.3 24 81-104 18-41 (42)
221 PF01603 B56: Protein phosphat 76.4 91 0.002 31.5 20.0 71 80-150 132-205 (409)
222 cd00197 VHS_ENTH_ANTH VHS, ENT 75.8 16 0.00036 29.3 7.6 45 29-73 20-64 (115)
223 PF05536 Neurochondrin: Neuroc 75.7 1.1E+02 0.0024 32.2 16.6 170 10-191 25-214 (543)
224 PF05327 RRN3: RNA polymerase 75.7 80 0.0017 33.4 14.6 141 329-470 54-211 (563)
225 KOG1222 Kinesin associated pro 73.6 1.1E+02 0.0024 31.2 24.1 281 48-341 347-664 (791)
226 PF14631 FancD2: Fanconi anaem 72.7 2.1E+02 0.0046 34.1 22.5 59 347-405 472-533 (1426)
227 smart00185 ARM Armadillo/beta- 72.4 6.3 0.00014 24.5 3.5 28 82-109 13-40 (41)
228 COG5218 YCG1 Chromosome conden 71.7 1.4E+02 0.003 31.4 22.7 136 198-335 49-194 (885)
229 PF04388 Hamartin: Hamartin pr 71.6 98 0.0021 33.5 14.1 151 312-474 5-162 (668)
230 PF03130 HEAT_PBS: PBS lyase H 71.3 6 0.00013 22.6 2.8 24 62-85 1-24 (27)
231 PF14668 RICTOR_V: Rapamycin-i 70.9 11 0.00025 27.6 4.9 53 98-150 4-59 (73)
232 KOG2005 26S proteasome regulat 70.7 1.5E+02 0.0033 31.6 17.4 273 48-340 417-743 (878)
233 smart00185 ARM Armadillo/beta- 70.5 7.4 0.00016 24.2 3.5 29 120-148 12-40 (41)
234 PF12530 DUF3730: Protein of u 69.6 93 0.002 28.6 19.5 133 17-151 9-153 (234)
235 COG5656 SXM1 Importin, protein 68.8 1.8E+02 0.0038 31.6 30.1 94 58-151 428-530 (970)
236 KOG2038 CAATT-binding transcri 68.4 1.8E+02 0.0039 31.5 19.1 123 20-147 281-407 (988)
237 PF11701 UNC45-central: Myosin 68.3 20 0.00044 30.7 6.8 96 92-189 16-116 (157)
238 cd03568 VHS_STAM VHS domain fa 67.5 75 0.0016 26.8 11.9 62 205-276 11-73 (144)
239 PF10165 Ric8: Guanine nucleot 67.4 1.5E+02 0.0033 30.3 16.5 65 207-273 41-112 (446)
240 PF09324 DUF1981: Domain of un 65.6 29 0.00064 26.3 6.4 64 80-144 16-83 (86)
241 PF07571 DUF1546: Protein of u 64.5 31 0.00068 26.6 6.5 59 91-149 16-78 (92)
242 PF11838 ERAP1_C: ERAP1-like C 64.4 1.4E+02 0.003 28.7 14.3 95 289-392 168-262 (324)
243 KOG2759 Vacuolar H+-ATPase V1 63.7 1.7E+02 0.0036 29.4 23.7 68 84-151 117-188 (442)
244 KOG2005 26S proteasome regulat 63.6 44 0.00095 35.3 8.9 83 60-149 622-704 (878)
245 PF09759 Atx10homo_assoc: Spin 63.6 32 0.00069 27.1 6.4 59 327-385 2-67 (102)
246 KOG1993 Nuclear transport rece 62.2 2.4E+02 0.0053 30.8 24.2 70 79-150 486-557 (978)
247 KOG4524 Uncharacterized conser 61.6 2.7E+02 0.0058 31.1 16.4 53 59-111 561-619 (1014)
248 KOG0392 SNF2 family DNA-depend 61.3 99 0.0022 35.4 11.5 65 80-146 815-880 (1549)
249 KOG2011 Sister chromatid cohes 60.9 87 0.0019 35.3 11.1 146 77-224 278-432 (1048)
250 KOG0392 SNF2 family DNA-depend 60.7 3.2E+02 0.0069 31.7 17.3 99 199-302 817-922 (1549)
251 PF12397 U3snoRNP10: U3 small 60.6 38 0.00081 27.5 6.7 66 45-112 5-76 (121)
252 COG4912 Predicted DNA alkylati 60.3 26 0.00056 31.7 5.9 69 80-151 117-185 (222)
253 KOG3723 PH domain protein Melt 60.2 2.2E+02 0.0048 29.7 13.1 81 259-339 181-265 (851)
254 PF12397 U3snoRNP10: U3 small 59.7 92 0.002 25.1 10.8 88 77-168 2-92 (121)
255 KOG2149 Uncharacterized conser 59.2 64 0.0014 31.9 8.9 69 84-152 61-131 (393)
256 KOG2022 Nuclear transport rece 59.2 86 0.0019 34.4 10.4 144 325-469 438-593 (982)
257 KOG2199 Signal transducing ada 58.8 1E+02 0.0022 30.4 10.0 92 15-106 14-114 (462)
258 PF12231 Rif1_N: Rap1-interact 58.0 2E+02 0.0044 28.6 21.3 180 252-451 146-352 (372)
259 KOG4535 HEAT and armadillo rep 56.7 1.8E+02 0.0038 29.9 11.4 156 91-270 6-180 (728)
260 PF14676 FANCI_S2: FANCI solen 56.4 1.1E+02 0.0024 26.2 9.1 49 100-151 37-86 (158)
261 KOG1993 Nuclear transport rece 56.2 3.1E+02 0.0067 30.1 19.2 74 198-271 526-603 (978)
262 COG5231 VMA13 Vacuolar H+-ATPa 55.7 27 0.00059 33.5 5.5 70 198-269 356-428 (432)
263 PF08389 Xpo1: Exportin 1-like 55.6 36 0.00079 28.2 6.1 64 79-144 80-148 (148)
264 PF06685 DUF1186: Protein of u 55.6 1.8E+02 0.0039 27.2 12.8 146 308-467 28-195 (249)
265 PF08569 Mo25: Mo25-like; Int 54.7 2.2E+02 0.0047 27.9 14.1 184 81-270 76-284 (335)
266 COG5110 RPN1 26S proteasome re 54.5 71 0.0015 33.0 8.5 87 59-149 617-705 (881)
267 PF07539 DRIM: Down-regulated 53.9 29 0.00064 29.2 5.0 48 80-132 16-63 (141)
268 cd08050 TAF6 TATA Binding Prot 53.4 2.3E+02 0.005 27.8 14.0 40 53-92 185-225 (343)
269 KOG1988 Uncharacterized conser 53.0 3.3E+02 0.0072 30.1 13.3 244 79-341 22-282 (970)
270 PF02854 MIF4G: MIF4G domain; 52.8 1.6E+02 0.0035 25.8 14.7 74 300-374 8-81 (209)
271 PF13001 Ecm29: Proteasome sta 52.5 2.9E+02 0.0064 28.8 26.0 169 286-455 247-447 (501)
272 PF14961 BROMI: Broad-minded p 52.2 2.1E+02 0.0045 32.9 12.2 67 49-115 164-236 (1296)
273 cd07064 AlkD_like_1 A new stru 52.2 47 0.001 30.0 6.5 63 55-117 124-186 (208)
274 cd03572 ENTH_epsin_related ENT 51.9 25 0.00054 28.8 4.1 39 76-114 33-71 (122)
275 PF11701 UNC45-central: Myosin 50.2 1.3E+02 0.0027 25.8 8.5 129 131-266 16-156 (157)
276 cd03565 VHS_Tom1 VHS domain fa 48.3 1.6E+02 0.0036 24.6 9.4 79 32-110 24-115 (141)
277 PF03378 CAS_CSE1: CAS/CSE pro 46.9 3.3E+02 0.0072 27.8 22.4 98 174-272 43-149 (435)
278 PF14631 FancD2: Fanconi anaem 46.9 5.8E+02 0.013 30.6 27.0 127 199-332 436-575 (1426)
279 PF00613 PI3Ka: Phosphoinositi 46.1 99 0.0021 27.3 7.4 96 22-132 26-123 (184)
280 PF00790 VHS: VHS domain; Int 46.1 1.6E+02 0.0034 24.6 8.4 75 76-150 37-119 (140)
281 COG4912 Predicted DNA alkylati 45.3 78 0.0017 28.7 6.5 64 52-115 124-188 (222)
282 KOG2011 Sister chromatid cohes 44.8 3.4E+02 0.0074 30.8 12.5 85 367-452 264-356 (1048)
283 PF14676 FANCI_S2: FANCI solen 44.5 79 0.0017 27.2 6.3 17 435-451 126-142 (158)
284 PF11864 DUF3384: Domain of un 44.5 3.7E+02 0.0081 27.6 31.2 383 57-449 1-464 (464)
285 KOG2149 Uncharacterized conser 44.0 1.1E+02 0.0025 30.3 7.9 94 252-346 70-176 (393)
286 cd00238 ERp29c ERp29 and ERp38 43.5 1.5E+02 0.0033 22.8 8.2 52 326-378 17-72 (93)
287 PF08064 UME: UME (NUC010) dom 42.5 1.4E+02 0.003 23.7 7.0 56 93-150 27-84 (107)
288 PRK13266 Thf1-like protein; Re 42.4 2.7E+02 0.0059 25.5 11.8 31 309-339 26-58 (225)
289 KOG2051 Nonsense-mediated mRNA 41.6 5.4E+02 0.012 29.2 13.1 66 401-466 520-591 (1128)
290 PF08623 TIP120: TATA-binding 41.1 60 0.0013 28.2 5.1 57 287-344 38-98 (169)
291 cd03572 ENTH_epsin_related ENT 40.6 1.5E+02 0.0031 24.3 6.9 37 37-73 29-65 (122)
292 PF07749 ERp29: Endoplasmic re 39.2 1.8E+02 0.0039 22.5 9.5 58 318-377 12-73 (95)
293 cd03567 VHS_GGA VHS domain fam 38.7 2.4E+02 0.0051 23.7 12.2 58 205-272 12-70 (139)
294 PTZ00479 RAP Superfamily; Prov 38.6 4.3E+02 0.0093 26.7 13.5 83 367-453 102-188 (435)
295 PF11264 ThylakoidFormat: Thyl 38.6 3.1E+02 0.0066 25.0 11.7 31 309-339 21-53 (216)
296 PF12333 Ipi1_N: Rix1 complex 38.0 79 0.0017 24.8 5.0 51 77-128 7-58 (102)
297 PF04118 Dopey_N: Dopey, N-ter 37.8 3.8E+02 0.0083 25.9 20.0 253 161-415 10-301 (307)
298 PF04078 Rcd1: Cell differenti 37.5 3.5E+02 0.0077 25.4 12.3 19 290-308 110-128 (262)
299 PF08569 Mo25: Mo25-like; Int 37.3 4.1E+02 0.0089 26.0 26.8 110 252-390 176-295 (335)
300 PF07571 DUF1546: Protein of u 36.8 1E+02 0.0022 23.7 5.3 54 361-414 19-77 (92)
301 PF10521 DUF2454: Protein of u 35.4 3.9E+02 0.0085 25.3 11.6 33 240-272 118-151 (282)
302 PF07539 DRIM: Down-regulated 34.5 55 0.0012 27.5 3.7 44 48-92 19-62 (141)
303 KOG2286 Exocyst complex subuni 34.2 3E+02 0.0065 29.7 9.8 62 342-403 580-641 (667)
304 COG5369 Uncharacterized conser 33.5 3.3E+02 0.0072 28.4 9.4 139 312-455 432-598 (743)
305 KOG2973 Uncharacterized conser 33.3 3E+02 0.0065 26.5 8.6 94 246-340 8-111 (353)
306 KOG4524 Uncharacterized conser 32.7 4.1E+02 0.0089 29.8 10.5 75 77-152 799-879 (1014)
307 cd03569 VHS_Hrs_Vps27p VHS dom 30.7 3.2E+02 0.007 22.9 11.9 57 206-272 16-73 (142)
308 PF12612 TFCD_C: Tubulin foldi 30.4 3.8E+02 0.0083 23.7 10.9 48 346-395 68-116 (193)
309 TIGR03060 PS_II_psb29 photosys 30.4 4.2E+02 0.009 24.1 11.5 72 309-393 26-101 (214)
310 COG5537 IRR1 Cohesin [Cell div 30.4 6.9E+02 0.015 26.6 14.2 123 252-376 287-424 (740)
311 cd08324 CARD_NOD1_CARD4 Caspas 30.4 1.1E+02 0.0024 23.0 4.2 66 306-383 14-81 (85)
312 PLN03076 ARF guanine nucleotid 30.0 1.1E+03 0.025 29.0 34.8 300 21-321 1109-1512(1780)
313 PLN03076 ARF guanine nucleotid 29.7 1.1E+03 0.025 28.9 23.3 74 77-151 1133-1214(1780)
314 cd00870 PI3Ka_III Phosphoinosi 29.6 3.7E+02 0.0081 23.3 8.9 94 22-130 27-122 (166)
315 PLN03060 inositol phosphatase- 29.5 1.4E+02 0.003 26.9 5.5 31 309-339 24-56 (206)
316 cd00872 PI3Ka_I Phosphoinositi 29.3 2.5E+02 0.0053 24.5 7.0 96 21-131 19-116 (171)
317 PF14663 RasGEF_N_2: Rapamycin 29.3 80 0.0017 25.4 3.8 30 122-151 10-39 (115)
318 KOG1048 Neural adherens juncti 29.2 7.2E+02 0.016 27.1 11.5 101 91-192 529-643 (717)
319 KOG1566 Conserved protein Mo25 29.1 4.6E+02 0.01 25.3 9.1 62 86-147 217-284 (342)
320 PF04388 Hamartin: Hamartin pr 29.0 7.8E+02 0.017 26.8 14.2 133 13-153 8-144 (668)
321 cd00197 VHS_ENTH_ANTH VHS, ENT 29.0 1.9E+02 0.004 23.0 6.0 62 88-151 7-68 (115)
322 KOG2122 Beta-catenin-binding p 28.8 1.1E+03 0.024 28.4 23.0 79 303-381 516-605 (2195)
323 KOG1848 Uncharacterized conser 28.7 4E+02 0.0087 31.3 9.9 50 81-130 997-1050(1610)
324 KOG4199 Uncharacterized conser 28.6 5.8E+02 0.012 25.1 19.5 74 48-129 79-154 (461)
325 COG4335 DNA alkylation repair 28.3 1.1E+02 0.0025 25.7 4.4 89 23-115 19-116 (167)
326 PF11919 DUF3437: Domain of un 27.9 1.7E+02 0.0037 22.4 5.1 51 97-149 5-58 (90)
327 KOG1048 Neural adherens juncti 27.8 4.8E+02 0.01 28.4 9.9 70 82-151 234-306 (717)
328 PF14225 MOR2-PAG1_C: Cell mor 27.7 5.2E+02 0.011 24.3 18.0 83 293-378 132-218 (262)
329 cd00864 PI3Ka Phosphoinositide 27.5 3.3E+02 0.0072 23.1 7.4 96 21-131 19-116 (152)
330 PF03378 CAS_CSE1: CAS/CSE pro 26.6 7E+02 0.015 25.4 15.8 169 50-225 34-230 (435)
331 KOG3723 PH domain protein Melt 26.5 5.9E+02 0.013 26.8 9.8 56 305-361 193-249 (851)
332 PF12031 DUF3518: Domain of un 26.1 4.4E+02 0.0096 24.5 8.2 22 290-311 138-160 (257)
333 KOG2549 Transcription initiati 26.0 7.8E+02 0.017 25.8 11.8 146 2-150 200-371 (576)
334 KOG1104 Nuclear cap-binding co 25.6 9E+02 0.02 26.4 21.1 113 296-413 503-623 (759)
335 PF09450 DUF2019: Domain of un 25.4 96 0.0021 24.6 3.4 22 86-107 52-73 (106)
336 PF07778 CENP-I: Mis6 ; Inter 25.4 7.6E+02 0.017 25.8 10.8 137 330-473 82-238 (511)
337 PF11935 DUF3453: Domain of un 25.2 5.4E+02 0.012 23.7 15.1 146 207-360 2-165 (239)
338 cd03561 VHS VHS domain family; 24.8 3.9E+02 0.0085 21.9 12.2 90 287-378 15-113 (133)
339 KOG2229 Protein required for a 24.7 8.1E+02 0.018 25.5 13.1 43 433-476 249-305 (616)
340 PF08620 RPAP1_C: RPAP1-like, 24.4 32 0.00069 25.3 0.5 33 41-73 34-66 (73)
341 cd00872 PI3Ka_I Phosphoinositi 24.1 4.2E+02 0.0092 23.1 7.5 80 8-93 38-117 (171)
342 PF08568 Kinetochor_Ybp2: Unch 23.5 9.4E+02 0.02 25.9 11.9 54 90-147 451-505 (633)
343 COG5369 Uncharacterized conser 23.4 1.8E+02 0.0039 30.2 5.7 99 49-147 434-543 (743)
344 KOG1789 Endocytosis protein RM 22.4 5.6E+02 0.012 29.4 9.3 88 252-340 1784-1883(2235)
345 COG5330 Uncharacterized protei 22.3 3.2E+02 0.0069 27.0 6.9 62 85-146 11-73 (364)
346 PF03635 Vps35: Vacuolar prote 22.1 8.3E+02 0.018 27.1 10.9 72 289-362 628-717 (762)
347 PF14961 BROMI: Broad-minded p 21.9 4E+02 0.0087 30.8 8.3 51 287-337 173-228 (1296)
348 COG5593 Nucleic-acid-binding p 21.6 9.4E+02 0.02 25.1 11.5 101 255-358 172-275 (821)
349 KOG1087 Cytosolic sorting prot 21.3 1.7E+02 0.0036 30.1 5.1 80 31-110 23-112 (470)
350 PF09090 MIF4G_like_2: MIF4G l 20.9 6.8E+02 0.015 23.2 9.9 82 328-414 53-138 (253)
351 cd03565 VHS_Tom1 VHS domain fa 20.7 5.1E+02 0.011 21.7 11.6 61 205-275 12-74 (141)
352 KOG2374 Uncharacterized conser 20.6 3.1E+02 0.0068 28.1 6.6 66 330-395 26-91 (661)
353 COG5656 SXM1 Importin, protein 20.2 1.2E+03 0.025 25.7 22.5 128 92-225 368-526 (970)
354 PF14222 MOR2-PAG1_N: Cell mor 20.2 2.9E+02 0.0062 29.2 6.8 52 62-113 451-503 (552)
355 PF04869 Uso1_p115_head: Uso1 20.2 3.4E+02 0.0074 26.3 6.8 75 21-114 50-130 (312)
356 smart00802 UME Domain in UVSB 20.1 4.5E+02 0.0098 20.9 6.8 53 96-150 30-84 (107)
No 1
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=7.9e-79 Score=633.88 Aligned_cols=466 Identities=38% Similarity=0.685 Sum_probs=438.5
Q ss_pred CCCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhH
Q 011744 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (478)
Q Consensus 1 ~~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~ 80 (478)
|++|+|++++|++|+++++|+|++.||++|+|+..|++.+||+++|++|+|+||++|+||.+|++|||++++|+.+++++
T Consensus 60 mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e 139 (746)
T PTZ00429 60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLE 139 (746)
T ss_pred HHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccH
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~ 160 (478)
.+.+.|++++.|++|||||+|++|+.|+|+.+|+.+++.+|.+.+.++|.|+||+|+.+|+.+|.+|.+..+ ..+.+.+
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~-~~l~l~~ 218 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS-EKIESSN 218 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc-hhhHHHH
Confidence 999999999999999999999999999999999998767899999999999999999999999999988765 3467788
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH
Q 011744 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240 (478)
Q Consensus 161 ~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~ 240 (478)
+.+.++++.+++++||+|+.+|++|..|.|.++++...+++.+.+.++|.|++|+++|+++++.+.+.. +++..+++.+
T Consensus 219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~ 297 (746)
T PTZ00429 219 EWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTV 297 (746)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 999999999999999999999999999999988888999999999999999999999999999986533 4677777777
Q ss_pred HhhhHHHHhhcCChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhh
Q 011744 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA 320 (478)
Q Consensus 241 ~~~~~l~~ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l 320 (478)
++.+++++|+++++|+||++|+.+..+.+.+|.+|.+|++.|+|+.+|+.+||++||++|+.+++++|++.|+.||.+|.
T Consensus 298 rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa 377 (746)
T PTZ00429 298 RVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYA 377 (746)
T ss_pred HHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHh
Confidence 88889999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhc--CCCC
Q 011744 321 TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESL--DTLD 398 (478)
Q Consensus 321 ~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l--~~~~ 398 (478)
.+.|.+|++++|++||.|+.+++...+|++++++++++.+++++ .+++.+++++++++|+. +++..|++.+ +.+.
T Consensus 378 ~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~--~il~~L~~~~~~~~i~ 454 (746)
T PTZ00429 378 SGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPEL--LMLDTLVTDYGADEVV 454 (746)
T ss_pred hcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccH--HHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999877765 47899999999999975 4678887755 6788
Q ss_pred hhhHHHHHHHHhhcccCccCCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHH
Q 011744 399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLKYYTCL 472 (478)
Q Consensus 399 ~~~~~~~~~~ilGE~~~~~~~~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~~~~ 472 (478)
+|+++++++|++|||++.+++++++++.++++|.+|+++||.++||+++|++.++|++ .+++++++|+.|++.
T Consensus 455 e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~~t~~ 527 (746)
T PTZ00429 455 EEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVLETVTTH 527 (746)
T ss_pred cHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999986 899999999988763
No 2
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-71 Score=551.62 Aligned_cols=455 Identities=21% Similarity=0.331 Sum_probs=389.1
Q ss_pred CCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHH
Q 011744 2 TVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEY 81 (478)
Q Consensus 2 ~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~ 81 (478)
++|||..||+++++|+++|+++..||+||++++.++++.+|+.+|++|++++||+|+|.++.++||.++|+++++||++.
T Consensus 63 MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~Emard 142 (866)
T KOG1062|consen 63 MLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARD 142 (866)
T ss_pred HhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCC--ccccc
Q 011744 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP--IFEIT 159 (478)
Q Consensus 82 l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~--~~~~~ 159 (478)
+.|.|.+++++.+|||||||++|+.|+.++.|++.+ .|++...++|.|+|+||..+++..+.++++.+++. .+.-.
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e--~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l 220 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE--HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDL 220 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH--HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999999999999999999999998 69999999999999999999999999999986532 22222
Q ss_pred HHHHHHHHHhcc------------cCChhhHHHHHHHHhhccCCChHHHHHHHHHhh----hhh---cCCChHHHHHHHH
Q 011744 160 SHTLSKLLTALN------------ECTEWGQVFILDALSRYKAADAREAENIVERVT----PRL---QHANCAVVLSAVK 220 (478)
Q Consensus 160 ~~~~~~Ll~~l~------------~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~----~~l---~~~~~~V~~ea~~ 220 (478)
.+.+.+.++.+. -++||+|+++||+|+.+...++ +..+.++.+. ..- ++.+.+|+|||++
T Consensus 221 ~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~-daSd~M~DiLaqvatntdsskN~GnAILYE~V~ 299 (866)
T KOG1062|consen 221 VPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA-DASDLMNDILAQVATNTDSSKNAGNAILYECVR 299 (866)
T ss_pred HHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 333334444432 1699999999999999886543 3334444433 322 3456799999999
Q ss_pred HHHHhhhhcCChHHHHHHHHHhhhHHHHhh-cCChhHHHHHHHHHHHHHhhCccchhhccc-eeeeccCCChhHHHHHHH
Q 011744 221 MILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLE 298 (478)
Q Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~-~~~~l~~dd~~ir~~al~ 298 (478)
+|+.+. ++ ..++. ..++.|.++| ++|.|+||+||..|.+.++.+|++++.|.. ++-|+.+.|.+||++|++
T Consensus 300 TI~~I~---~~-~~Lrv---lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralE 372 (866)
T KOG1062|consen 300 TIMDIR---SN-SGLRV---LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALE 372 (866)
T ss_pred HHHhcc---CC-chHHH---HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 999863 23 33443 3566777666 689999999999999999999999999965 778999999999999999
Q ss_pred HHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhh
Q 011744 299 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (478)
Q Consensus 299 lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~ 378 (478)
++|.|.|++|+..+++||+.|+...|++++.+++.+|..++++|+++..|++|++++.|+.+|++|..++|..+..++.+
T Consensus 373 Ls~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~ 452 (866)
T KOG1062|consen 373 LSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIAN 452 (866)
T ss_pred HHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred C-CcchHHHHHHHHhhcC-----CCChhhHHHHHHHHhhcccCccCC-----------HHHHHHHH---hhcCCCCCHHH
Q 011744 379 Y-PNTYESIIATLCESLD-----TLDEPEAKASMIWIIGEYAERIDN-----------ADELLESF---LESFPEEPAQV 438 (478)
Q Consensus 379 ~-~~~~~~~i~~L~~~l~-----~~~~~~~~~~~~~ilGE~~~~~~~-----------~~~~l~~l---~~~~~~~~~~v 438 (478)
. ++.+++.+.++...+. +++.+...++++|+|||||++.-+ ..+++..+ ..++ ..++.|
T Consensus 453 ~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~-~s~~~t 531 (866)
T KOG1062|consen 453 AFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH-SSDSTT 531 (866)
T ss_pred CCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc-cchHHH
Confidence 5 8999999998887553 355566789999999999976543 24555544 4443 456999
Q ss_pred HHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Q 011744 439 QLQLLTATVKLFLKKPTEGPQQMIQVTLKYY 469 (478)
Q Consensus 439 k~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~ 469 (478)
|+++|+|++|+.+|+++ .-+.++++...+
T Consensus 532 k~yal~Al~KLSsr~~s--~~~ri~~lI~~~ 560 (866)
T KOG1062|consen 532 KGYALTALLKLSSRFHS--SSERIKQLISSY 560 (866)
T ss_pred HHHHHHHHHHHHhhccc--cHHHHHHHHHHh
Confidence 99999999999999998 456666665443
No 3
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-70 Score=532.57 Aligned_cols=461 Identities=20% Similarity=0.302 Sum_probs=403.9
Q ss_pred CCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHH
Q 011744 2 TVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEY 81 (478)
Q Consensus 2 ~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~ 81 (478)
.+|||++||+|+.+++++|+.|++|.+||++++.+.++++|+..+++|+++|||.|.||...++||.+++++|+.++++.
T Consensus 67 llg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea 146 (938)
T KOG1077|consen 67 LLGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEA 146 (938)
T ss_pred HhcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC--CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCccccc
Q 011744 82 LCDPLQRCLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (478)
Q Consensus 82 l~~~i~~~l~~--~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~ 159 (478)
+.++|.++|.+ ..++||++|++|++++|+.+||.++..+|.+.+..+|+|.+.+|..++.+++.-+++..++.+-...
T Consensus 147 ~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~ 226 (938)
T KOG1077|consen 147 FADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL 226 (938)
T ss_pred hhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH
Confidence 99999999987 6779999999999999999999998889999999999999999999999999989888765443333
Q ss_pred HHHHHHHHHhcc-------------cCChhhHHHHHHHHhhccCCCh-HHH---HHHHHHhhhhhc---------C--CC
Q 011744 160 SHTLSKLLTALN-------------ECTEWGQVFILDALSRYKAADA-REA---ENIVERVTPRLQ---------H--AN 211 (478)
Q Consensus 160 ~~~~~~Ll~~l~-------------~~~~~~q~~ll~~l~~~~~~~~-~~~---~~~l~~l~~~l~---------~--~~ 211 (478)
...+.+|..... -|+||+|++++|+|+.|.+.++ ... .++++.+....+ + ..
T Consensus 227 ~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~ 306 (938)
T KOG1077|consen 227 PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAK 306 (938)
T ss_pred HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhH
Confidence 344444443321 2689999999999999964432 222 234444433222 2 23
Q ss_pred hHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc--cchhhccc-eeeecc-
Q 011744 212 CAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--TILAHEIK-VFFCKY- 286 (478)
Q Consensus 212 ~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~--~~~~~~~~-~~~~l~- 286 (478)
.+|+|||++.++++. ++++++. +++..|+.+++ +++|+||.||+++..++...+ +.++.|.+ +|..+.
T Consensus 307 naVLFeaI~l~~h~D---~e~~ll~----~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkt 379 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLD---SEPELLS----RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKT 379 (938)
T ss_pred HHHHHHHHHHHHHcC---CcHHHHH----HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhcc
Confidence 599999999999863 3566654 67778888886 899999999999999998755 56888876 444555
Q ss_pred CCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHH
Q 011744 287 NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQ 366 (478)
Q Consensus 287 ~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~ 366 (478)
+.|.+||++|+|+||.||+.+|++.||.+|++|+...|+.+|++++-+++.++|+|+.+..||+|++++++..+|+++.+
T Consensus 380 erDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsd 459 (938)
T KOG1077|consen 380 ERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSD 459 (938)
T ss_pred ccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhH-HHHHHHHhhcccCccCC-----HHHHHHHHhhcCCCCCHHHHH
Q 011744 367 EAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEA-KASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQL 440 (478)
Q Consensus 367 ~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~-~~~~~~ilGE~~~~~~~-----~~~~l~~l~~~~~~~~~~vk~ 440 (478)
|+|.++.+++.++++.+.++.++++++|+...-.+. .++..|++||||+++.. |...+..+.++|...++.+|+
T Consensus 460 eVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~ 539 (938)
T KOG1077|consen 460 EVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRA 539 (938)
T ss_pred HHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHH
Confidence 999999999999999999999999999987554444 67889999999999865 679999999999999999999
Q ss_pred HHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Q 011744 441 QLLTATVKLFLKKPTEGPQQMIQVTLKYYTC 471 (478)
Q Consensus 441 ~il~a~~Kl~~~~~~~~~~~~~~~~l~~~~~ 471 (478)
.+||+..|++..+|+ +++.++.+|+.+.+
T Consensus 540 lLLtTyiKl~nl~PE--i~~~v~~vFq~~~n 568 (938)
T KOG1077|consen 540 LLLTTYIKLINLFPE--IKSNVQKVFQLYSN 568 (938)
T ss_pred HHHHHHHHHHhhChh--hhHHHHHHHHhhcc
Confidence 999999999999997 99999999998765
No 4
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-68 Score=531.07 Aligned_cols=467 Identities=72% Similarity=1.129 Sum_probs=448.2
Q ss_pred CCCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhH
Q 011744 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (478)
Q Consensus 1 ~~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~ 80 (478)
||.|+|+|.+|+++++++++.|.+.||++|+|+..|+..+|+.+++++|++.||..++||.+|++|+|+++.++.+.+.+
T Consensus 41 Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~e 120 (734)
T KOG1061|consen 41 MTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITE 120 (734)
T ss_pred CccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCC-Cccccc
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEIT 159 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~-~~~~~~ 159 (478)
.+..++.++++|.+|||||+|+.+..++++.+|+...+.++++.|..++.|+||+|+.+|+.++.+|.+..+. ..+.+.
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence 9999999999999999999999999999999999999889999999999999999999999999999988764 567888
Q ss_pred HHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHH
Q 011744 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (478)
Q Consensus 160 ~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~ 239 (478)
++.+.++++.++++++|+|+.+|..+..|.|+++.+++++++.+.+.++|.|++|++.+++++++..++.. +....+.
T Consensus 201 ~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~--~~~~~~~ 278 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK--QVNELLF 278 (734)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH--HHHHHHH
Confidence 89999999999999999999999999999999988999999999999999999999999999999876543 3445567
Q ss_pred HHhhhHHHHhhcCChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHh
Q 011744 240 KKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEY 319 (478)
Q Consensus 240 ~~~~~~l~~ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~ 319 (478)
+++.+++..++++.+++.|+||+.+..+.+..|+.+..+++.|+|.++|+.+|+..+++++..+++++|+.+++.|+..|
T Consensus 279 ~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eY 358 (734)
T KOG1061|consen 279 KKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEY 358 (734)
T ss_pred HHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 88999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCCh
Q 011744 320 ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDE 399 (478)
Q Consensus 320 l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~ 399 (478)
..+.|.+|.+++|++||+++.++... ..+++.++++++.+.+|+.+|++.+++++++++|...+.++..+...++.+++
T Consensus 359 atevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~e 437 (734)
T KOG1061|consen 359 ATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQE 437 (734)
T ss_pred hhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCC
Confidence 99999999999999999999998766 77999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcccCccCCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Q 011744 400 PEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLKYYTC 471 (478)
Q Consensus 400 ~~~~~~~~~ilGE~~~~~~~~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~~~ 471 (478)
|+++.+++|++|||++.++++.++++.+.++|.+|..+||..+|||..|+|.+.|++ .+++++.++..|+.
T Consensus 438 peak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~-tq~~l~~vL~~~~~ 508 (734)
T KOG1061|consen 438 PEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTE-TQELLQGVLPLATA 508 (734)
T ss_pred hHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999999999999999999986 99999999999875
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=3.3e-68 Score=555.89 Aligned_cols=461 Identities=37% Similarity=0.630 Sum_probs=410.2
Q ss_pred CCCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhH
Q 011744 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (478)
Q Consensus 1 ~~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~ 80 (478)
|++|+|++|++++++++++|+|+..||+||+|++.+.+.+||.+.|++|+++||++|+||++|++||+++++++++++++
T Consensus 34 ~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~ 113 (526)
T PF01602_consen 34 MMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAE 113 (526)
T ss_dssp HHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHH
T ss_pred HHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccH
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~ 160 (478)
.+.+.|.+++.|++|+|||+|+.|+.++++.+|+.+++. |.+.+.+++.|+|++|+.+|+.++.++ +.++.....+++
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~ 191 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP 191 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH
Confidence 999999999999999999999999999999999999854 899999999999999999999999999 222221125667
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHH--HHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHH
Q 011744 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREA--ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNL 238 (478)
Q Consensus 161 ~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~--~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~ 238 (478)
+.++.|.+.+..++||.|++++++++.+.+.++... ..+++.+.+.+++.+++|+++|++++..+.+ ++...
T Consensus 192 ~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~~~--- 265 (526)
T PF01602_consen 192 KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPELL--- 265 (526)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHH---
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc---chHHH---
Confidence 778888877789999999999999999999888777 6799999999999999999999999998743 43322
Q ss_pred HHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchh-hccceeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHH
Q 011744 239 CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA-HEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 316 (478)
Q Consensus 239 ~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~-~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L 316 (478)
..++++++.+++ +++|+||++|+++..++..+|..+. .+...+.+..++|.+||++|+++|+.+++++|++.|+++|
T Consensus 266 -~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL 344 (526)
T PF01602_consen 266 -QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDEL 344 (526)
T ss_dssp -HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred -HhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHH
Confidence 467888888886 7899999999999999999855443 3444555555888999999999999999999999999999
Q ss_pred HHhhhhc-CHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcC
Q 011744 317 KEYATEV-DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLD 395 (478)
Q Consensus 317 ~~~l~~~-d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~ 395 (478)
.+|+++. |++++++++.+|+.++++++++.+|+++++++++..+++++..++|..+.+++.++|+.+++++..+++.++
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~ 424 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLE 424 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHT
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 9999554 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHhhcccCccCC---HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchH-HHHHHHHHHHH
Q 011744 396 TLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQ-QMIQVTLKYYT 470 (478)
Q Consensus 396 ~~~~~~~~~~~~~ilGE~~~~~~~---~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~-~~~~~~l~~~~ 470 (478)
++.+++++++++|++|||++..++ ++++++.+.++|..+++.||.+++++++|++.++|+++.+ .+++.+.+.++
T Consensus 425 ~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~ 503 (526)
T PF01602_consen 425 DISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLAT 503 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHH
T ss_pred HhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhc
Confidence 999999999999999999999988 8999999999999999999999999999999999975454 56666655555
No 6
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-66 Score=510.22 Aligned_cols=455 Identities=37% Similarity=0.639 Sum_probs=425.3
Q ss_pred CCCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhH
Q 011744 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (478)
Q Consensus 1 ~~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~ 80 (478)
|..|.|++.+|+.|+|..+|+|.++||+.|+|+.+|++++|++++|.||++||+|.++|+.+|+.|||+|+.|+.|.+++
T Consensus 63 iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaP 142 (968)
T KOG1060|consen 63 IAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAP 142 (968)
T ss_pred HhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccH
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~ 160 (478)
.++-.|+++..|.+|||||.||.|+.|+|..+|+.-+ .+.+.+..||.|.+|.|+.+|+.++.++| ++++++++
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~--qL~e~I~~LLaD~splVvgsAv~AF~evC----PerldLIH 216 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD--QLEEVIKKLLADRSPLVVGSAVMAFEEVC----PERLDLIH 216 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH--HHHHHHHHHhcCCCCcchhHHHHHHHHhc----hhHHHHhh
Confidence 9999999999999999999999999999999998765 68899999999999999999999999996 45699999
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHhhccCCC---------------------------------hHHHHHHHHHhhhhh
Q 011744 161 HTLSKLLTALNECTEWGQVFILDALSRYKAAD---------------------------------AREAENIVERVTPRL 207 (478)
Q Consensus 161 ~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~---------------------------------~~~~~~~l~~l~~~l 207 (478)
+.++++|+.+.+.++|+|+.++.+|.+|++.. +.+...+++...+++
T Consensus 217 knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl 296 (968)
T KOG1060|consen 217 KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL 296 (968)
T ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH
Confidence 99999999999999999999999999986321 123345788888999
Q ss_pred cCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhcCChhHHHHHHHHHHHHHhhCccchhhccceeeeccC
Q 011744 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYN 287 (478)
Q Consensus 208 ~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~ 287 (478)
++.|++|++++++++.+++| +.-. ..++.+|+++|.+++++||+.|+.+..++...|..|.||++.||....
T Consensus 297 ~S~n~sVVmA~aql~y~lAP----~~~~----~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ss 368 (968)
T KOG1060|consen 297 QSRNPSVVMAVAQLFYHLAP----KNQV----TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSS 368 (968)
T ss_pred hcCCcHHHHHHHhHHHhhCC----HHHH----HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecC
Confidence 99999999999999998754 2211 357889999999999999999999999999999999999999999889
Q ss_pred CChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHH
Q 011744 288 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE 367 (478)
Q Consensus 288 dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~ 367 (478)
|+..++..++++|..|+++.|+..|+.|+..|+++.|.+|...+|++||+||.........+++.++.+++..+..|..+
T Consensus 369 Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~e 448 (968)
T KOG1060|consen 369 DPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAE 448 (968)
T ss_pred CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC-HHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011744 368 AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTAT 446 (478)
Q Consensus 368 ~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~-~~~~l~~l~~~~~~~~~~vk~~il~a~ 446 (478)
++.+++.+++++|..+..++.+|...++.+.-|.+++.++|++|||+..++. ++|++|.+.++|..|.++||.+||+..
T Consensus 449 aV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~ 528 (968)
T KOG1060|consen 449 AVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLS 528 (968)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhh
Confidence 9999999999999998999999999999998999999999999999999876 899999999999999999999999999
Q ss_pred HHHhccCCCcchHHHHHHHHHHHH
Q 011744 447 VKLFLKKPTEGPQQMIQVTLKYYT 470 (478)
Q Consensus 447 ~Kl~~~~~~~~~~~~~~~~l~~~~ 470 (478)
+|++...+++ .+.+++++|+++.
T Consensus 529 aKLyl~~~~~-~kll~~Yv~~L~~ 551 (968)
T KOG1060|consen 529 AKLYLTNIDQ-TKLLVQYVFELAR 551 (968)
T ss_pred hhheEechhh-HHHHHHHHHHHhc
Confidence 9999988775 9999999998864
No 7
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-54 Score=424.08 Aligned_cols=444 Identities=19% Similarity=0.323 Sum_probs=391.1
Q ss_pred CCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHH
Q 011744 2 TVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEY 81 (478)
Q Consensus 2 ~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~ 81 (478)
++|+|++|.-++++..|+|..+..||+||+|+.+-++...+.+.|.+|.++||++|.|.+-.+.||..|+++.+|++++.
T Consensus 65 mlg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARD 144 (877)
T KOG1059|consen 65 MLGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARD 144 (877)
T ss_pred HHcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHH
Q 011744 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (478)
Q Consensus 82 l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~ 161 (478)
+.++|..++.++.|||||+|+..++|++.++|+.+.+ ..|.+..-|.|+||+|+.+|+..+++++..+|.++..+. |
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~--~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA-P 221 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP--CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA-P 221 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh--hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc-H
Confidence 9999999999999999999999999999999999984 679999999999999999999999999999998888776 5
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCC-hHHHHHHHHHHHHhh--hhcCChHHHHHH
Q 011744 162 TLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHAN-CAVVLSAVKMILQQM--ELITSTDVVRNL 238 (478)
Q Consensus 162 ~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~-~~V~~ea~~~i~~~~--~~~~~~~~~~~~ 238 (478)
.|-+++.. ..+.|.-++++++++.+.|-++....++++.+..+++++. .+++|||++++..-. ...++.+..-
T Consensus 222 ~ffklltt--SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi-- 297 (877)
T KOG1059|consen 222 LFYKLLVT--SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI-- 297 (877)
T ss_pred HHHHHHhc--cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--
Confidence 56566654 4689999999999999999999888899999999998765 489999999997641 1011222222
Q ss_pred HHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccc-eeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHH
Q 011744 239 CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 316 (478)
Q Consensus 239 ~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~-~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L 316 (478)
+-+++.|..+.. +|+|+||++|-++.+++..+|..++.|.. ++.|+.+.|.+||.+||++|+.|++++|+..||..|
T Consensus 298 -qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~L 376 (877)
T KOG1059|consen 298 -QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTL 376 (877)
T ss_pred -HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 345667776774 89999999999999999999999999987 568999999999999999999999999999999999
Q ss_pred HHhhhhcCH-HHHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHH
Q 011744 317 KEYATEVDV-DFVRKAVRAIGRCAIK----LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLC 391 (478)
Q Consensus 317 ~~~l~~~d~-~~r~~~v~~i~~l~~~----~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~ 391 (478)
..|+..++. .+|.+++..|-.++.. |-.+++||+.++.++....|..-..-+.+.+.++..+.|..|+..|..+.
T Consensus 377 M~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~ 456 (877)
T KOG1059|consen 377 MKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMS 456 (877)
T ss_pred HHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHH
Confidence 988866554 8999999887665544 34789999999999999988777788889999999899999999888888
Q ss_pred hhcCCC----------ChhhHHHHHHHHhhcccCccCCHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHhccC
Q 011744 392 ESLDTL----------DEPEAKASMIWIIGEYAERIDNADELLESFLESFP-EEPAQVQLQLLTATVKLFLKK 453 (478)
Q Consensus 392 ~~l~~~----------~~~~~~~~~~~ilGE~~~~~~~~~~~l~~l~~~~~-~~~~~vk~~il~a~~Kl~~~~ 453 (478)
..+++- .-.+++.+++|++|||++.+.++.++++.+...-. .-+..+++..+.+++|+|+..
T Consensus 457 ~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~ 529 (877)
T KOG1059|consen 457 ALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSW 529 (877)
T ss_pred HHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHH
Confidence 777621 13567889999999999999999999999987554 678999999999999999874
No 8
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.6e-48 Score=394.28 Aligned_cols=452 Identities=40% Similarity=0.647 Sum_probs=381.8
Q ss_pred CCCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhH
Q 011744 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (478)
Q Consensus 1 ~~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~ 80 (478)
|+.|+|++.+|++|+|.+.+.|.++||+.|+|+..|++.+|+++++++|+++||++|+||.+|++|+|+++.++.+++.+
T Consensus 47 M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~ 126 (757)
T COG5096 47 MSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLG 126 (757)
T ss_pred HhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccH
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~ 160 (478)
.++++|++++.|+++||||+|+.|+.++|+.+|+.+.+.+....+..++.|.||.|..+|+.++.++.++....+.....
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~ 206 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVI 206 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence 99999999999999999999999999999999999988778899999999999999999999999998763211111111
Q ss_pred HHHHHHHHhc-ccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHH
Q 011744 161 HTLSKLLTAL-NECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (478)
Q Consensus 161 ~~~~~Ll~~l-~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~ 239 (478)
..+.++.-.. ..+.+|.+...+..|..+.+..+.+...+.+.+...+++.|+.|...+++.++.+.+..++.. +.
T Consensus 207 ~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~----~~ 282 (757)
T COG5096 207 LRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNN----LF 282 (757)
T ss_pred HHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhcccc----HH
Confidence 1111111000 112489999999999998887777777888888888999999999999999999887655433 22
Q ss_pred HHhhhHHHHhhcCC-hhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 011744 240 KKMAPPLVTLLSAE-PEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 318 (478)
Q Consensus 240 ~~~~~~l~~ll~~~-~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~ 318 (478)
....+++..++.++ +.+.|+.......+.+..|+.+..-.+.|++..++|.+++..+++.+..+.+.+|..+++.++..
T Consensus 283 ~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~ 362 (757)
T COG5096 283 LISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIY 362 (757)
T ss_pred HhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Confidence 45677888888755 77888888888888888888877777778888889999999999999999999999999999999
Q ss_pred hhhh--cCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhc---ccchhHHHHH-----HHHHH---HHHhhC----Cc
Q 011744 319 YATE--VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK---IKVNYVVQEA-----IIVIK---DIFRRY----PN 381 (478)
Q Consensus 319 ~l~~--~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~---~~~~~v~~~~-----~~~l~---~i~~~~----~~ 381 (478)
|..+ .++++.++++++||.++.+.+.....+++.++.++. ..++|+..++ |..++ .++... ++
T Consensus 363 y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~ 442 (757)
T COG5096 363 YIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPK 442 (757)
T ss_pred HHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchh
Confidence 9988 899999999999999999987777889999999999 8899988877 65554 334333 34
Q ss_pred chHHHHHHHHhhcCCC-ChhhHHHHH-----HHHhhcccCccCC-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCC
Q 011744 382 TYESIIATLCESLDTL-DEPEAKASM-----IWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 454 (478)
Q Consensus 382 ~~~~~i~~L~~~l~~~-~~~~~~~~~-----~~ilGE~~~~~~~-~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~ 454 (478)
.....+..+.+.++.- ..|.++.++ +|++|||++.++. .++.++.....|..|+.+||.+|+++.+|++...+
T Consensus 443 ~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~ 522 (757)
T COG5096 443 ILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRLEPELLRIAISNFVDETLEVQYTILMSSVKLIANSI 522 (757)
T ss_pred hhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCc
Confidence 4444455555555411 168888888 9999999999877 55899999999999999999999999999999887
Q ss_pred Cc
Q 011744 455 TE 456 (478)
Q Consensus 455 ~~ 456 (478)
+.
T Consensus 523 ~~ 524 (757)
T COG5096 523 RK 524 (757)
T ss_pred Hh
Confidence 75
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-44 Score=353.83 Aligned_cols=400 Identities=23% Similarity=0.417 Sum_probs=352.8
Q ss_pred CCCCCCchhhHHHHHH-hccCCChhHHHHHHHHHHHhcccCch-----HHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC
Q 011744 1 MTVGKDVSSLFTDVVN-CMQTENLELKKLVYLYLINYAKSQPD-----LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR 74 (478)
Q Consensus 1 ~~~G~d~~~~~~~ii~-l~~s~~~~~Krl~yl~l~~~~~~~~e-----~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~ 74 (478)
|..|++.+.+++++++ .+.+.|.++||+-|+||..+.+.+++ ..+|++|+++|||+|||+++|+..||++|.+.
T Consensus 48 mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLk 127 (948)
T KOG1058|consen 48 MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLK 127 (948)
T ss_pred HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcC
Confidence 5789999999999999 69999999999999999999888763 67899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH-hhcCCChhhHHHHHHHHHHHhhhCCC
Q 011744 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD-LISDNNPMVVANAVAALAEIEENSSR 153 (478)
Q Consensus 75 ~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~~~ 153 (478)
.||+.+.++|.|..++.|.++||||.|+.|+..||+..-+++++ ..+.+.. +..+.||.+.++|+..|....++.
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pD--apeLi~~fL~~e~DpsCkRNAFi~L~~~D~Er-- 203 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPD--APELIESFLLTEQDPSCKRNAFLMLFTTDPER-- 203 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCC--hHHHHHHHHHhccCchhHHHHHHHHHhcCHHH--
Confidence 99999999999999999999999999999999999998777774 5566766 567999999999999888875542
Q ss_pred CcccccHHHHHHHHHhcc---cCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcC
Q 011744 154 PIFEITSHTLSKLLTALN---ECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (478)
Q Consensus 154 ~~~~~~~~~~~~Ll~~l~---~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~ 230 (478)
.+.++...+. ..++-+|..++.++.+-+..++.+...++..+..+|++++++|+|||+.++..+. .
T Consensus 204 --------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS---~ 272 (948)
T KOG1058|consen 204 --------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS---N 272 (948)
T ss_pred --------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc---C
Confidence 4566666543 3457789999999998887778888899999999999999999999999988764 3
Q ss_pred ChHHHHHHHHHhhhHHHHhhc--CChhHHHHHHHHHHHHHhhCccchhhcc-ceeeeccCCChhHHHHHHHHHHHhcCcc
Q 011744 231 STDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTILAHEI-KVFFCKYNDPIYVKMEKLEIMIKLASDR 307 (478)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~ll~--~~~~ir~~aL~~l~~l~~~~~~~~~~~~-~~~~~l~~dd~~ir~~al~lL~~l~~~~ 307 (478)
+|..++ ...+.++.++. +|.|++.+.|..|..+...+.++++..+ +++..+..+|.++|++++++.+.++...
T Consensus 273 ~p~alk----~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 273 DPTALK----AAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred CHHHHH----HHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 676664 56777888884 7889999999999999988888888875 4556677888999999999999999999
Q ss_pred cHHHHHHHHHHhh-hh------cCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCC
Q 011744 308 NIDQVLLEFKEYA-TE------VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP 380 (478)
Q Consensus 308 n~~~Iv~~L~~~l-~~------~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~ 380 (478)
|+++|++.|..-+ +. .+..+|+.++++|..++.+||......+..+++++++.+..-...++.++++.++++|
T Consensus 349 Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 349 NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 9999999988443 22 3467999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC
Q 011744 381 NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN 419 (478)
Q Consensus 381 ~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~ 419 (478)
.+|..++++|.+.+..+..+++.+.++|++|||+.-..+
T Consensus 429 ~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~ 467 (948)
T KOG1058|consen 429 NLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSE 467 (948)
T ss_pred hHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHH
Confidence 999999999999999888899999999999999976553
No 10
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-33 Score=277.92 Aligned_cols=443 Identities=17% Similarity=0.308 Sum_probs=368.3
Q ss_pred CchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHH
Q 011744 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDP 85 (478)
Q Consensus 6 d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~ 85 (478)
+.+..|+.++|+++|+|..+||+.|+++..+.....| .++++++++||.+..++.+|..|+|+|+.|-+..+....-..
T Consensus 61 eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised-viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery 139 (865)
T KOG1078|consen 61 EATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED-VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERY 139 (865)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh-hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHH
Confidence 4677999999999999999999999999999877655 578999999999999999999999999999999999999999
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHH
Q 011744 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSK 165 (478)
Q Consensus 86 i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~ 165 (478)
+++++.|+++.|+..|...-++++..+++.+. .|...+.....+.+.+|+++|+..+++|.+++. -.+.+
T Consensus 140 ~kqaivd~~~avSsaalvss~hll~~~~~~vk--rw~neiqea~~s~~~m~QyHalglLyqirk~dr--------la~sk 209 (865)
T KOG1078|consen 140 MKQAIVDKNPAVSSAALVSSYHLLPISFDVVK--RWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR--------LAVSK 209 (865)
T ss_pred HHhHeeccccccchHHHHHHhhhhcccHHHHH--HHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH--------HHHHH
Confidence 99999999999999999999999999998887 699999999999999999999999999987652 13344
Q ss_pred HHHhccc---CChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHh
Q 011744 166 LLTALNE---CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKM 242 (478)
Q Consensus 166 Ll~~l~~---~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~ 242 (478)
++..+.. .+|+.++-+++.-.....++......+...+...+.|....|.+||++++..+.. ....++. ..
T Consensus 210 lv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~-~~~r~l~-----pa 283 (865)
T KOG1078|consen 210 LVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPN-TNSRELA-----PA 283 (865)
T ss_pred HHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccc-cCHhhcc-----hH
Confidence 4444322 3667766666665554433322223455666668889999999999999988643 1111111 23
Q ss_pred hhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhc---cceeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 011744 243 APPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHE---IKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 318 (478)
Q Consensus 243 ~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~---~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~ 318 (478)
+..+.-+++ ..+-+||.|+++|.+++..+|..+.-. +..+. .+...+|...|+.+|++.++++|++.++..+-.
T Consensus 284 vs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lI--td~NrsIat~AITtLLKTG~e~sv~rLm~qI~~ 361 (865)
T KOG1078|consen 284 VSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLI--TDSNRSIATLAITTLLKTGTESSVDRLMKQISS 361 (865)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhh--cccccchhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445555665 678899999999999999999765432 33221 233478999999999999999999999999999
Q ss_pred hhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCC
Q 011744 319 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNY-VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTL 397 (478)
Q Consensus 319 ~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~-v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~ 397 (478)
|+.+-+.+|+.-.+.+|..++.+||.....+.+++-++|...|.+ ....+++.+..++..+|+..+..+..|+++++|+
T Consensus 362 fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc 441 (865)
T KOG1078|consen 362 FVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC 441 (865)
T ss_pred HHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc
Confidence 999999999999999999999999988888999999999887764 7788999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhcccCccCCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Q 011744 398 DEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLKYY 469 (478)
Q Consensus 398 ~~~~~~~~~~~ilGE~~~~~~~~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~ 469 (478)
..++.--....++|.-|...++|..++|.++++...|+..||+..++|++|+....+. +++-+..+++=|
T Consensus 442 e~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~--l~~sI~vllkRc 511 (865)
T KOG1078|consen 442 EFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV--LLPSILVLLKRC 511 (865)
T ss_pred cchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC--ccccHHHHHHHH
Confidence 8888777888999999999999999999999999999999999999999999965554 455555444433
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.4e-32 Score=263.31 Aligned_cols=446 Identities=15% Similarity=0.221 Sum_probs=352.1
Q ss_pred chhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCH-HHHHHHHHHhcCCChhhhhHHHHHH
Q 011744 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP-LIRALAVRTMGCIRVDKITEYLCDP 85 (478)
Q Consensus 7 ~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~-~vr~~AL~~l~~i~~~e~~~~l~~~ 85 (478)
...+|+.+.|+++++|+.+|+..|+++..+..-..| .+|++++++||++..-| .+|..|+|.|..+.+.+++......
T Consensus 63 at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ted-vlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~ 141 (898)
T COG5240 63 ATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTED-VLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERY 141 (898)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchh-hhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHH
Confidence 467899999999999999999999999999877655 58999999999998887 8999999999999999999999999
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhc----------------CCChhhHHHHHHHHHHHhh
Q 011744 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS----------------DNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 86 i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~----------------d~~~~V~~~a~~~l~~i~~ 149 (478)
+..+..|+.+.+|..|....++++-.+-..+. .|....+...- ..++.-+++|+.+|+++..
T Consensus 142 l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~--rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr 219 (898)
T COG5240 142 LNQAFVSTSMARRSAALVVAYHLLPNNFNQTK--RWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKR 219 (898)
T ss_pred hhhhccccchhhhhhHHHHhhhhccccHHHHH--HHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhc
Confidence 99999999999999999988887755444443 45544443321 2345567888888888776
Q ss_pred hCCCCcccccHHHHHHHHHhccc----CChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHh
Q 011744 150 NSSRPIFEITSHTLSKLLTALNE----CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (478)
Q Consensus 150 ~~~~~~~~~~~~~~~~Ll~~l~~----~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~ 225 (478)
.+.- ..-++++.+.. .+....+.++|....+..++++....+.+.+..-+++....|.+|+++.++.+
T Consensus 220 ~dkm--------a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~ 291 (898)
T COG5240 220 TDKM--------AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCAL 291 (898)
T ss_pred ccHH--------HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 5421 11223332222 22333444455554444444433333444444456677789999999999986
Q ss_pred hh-hcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchh---hccceeeeccCCChhHHHHHHHHH
Q 011744 226 ME-LITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA---HEIKVFFCKYNDPIYVKMEKLEIM 300 (478)
Q Consensus 226 ~~-~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~---~~~~~~~~l~~dd~~ir~~al~lL 300 (478)
.. ++ .++.++ ..+..|..+|+ .....||.|++.|.+++..+|..+. +.+..+. .+...+|..-|+..|
T Consensus 292 ~~~nv-~~~~~~----~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLI--sd~Nr~IstyAITtL 364 (898)
T COG5240 292 SEENV-GSQFVD----QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLI--SDENRTISTYAITTL 364 (898)
T ss_pred HHhcc-CHHHHH----HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHh--hcccccchHHHHHHH
Confidence 42 12 234443 45667777776 5678999999999999999997543 3444332 344578999999999
Q ss_pred HHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHhhC
Q 011744 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNY-VVQEAIIVIKDIFRRY 379 (478)
Q Consensus 301 ~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~-v~~~~~~~l~~i~~~~ 379 (478)
.+.++++|++.++..+..|++|.+.+|+.-++.++..++.+||.....+++++.+.|.+.|.+ +...+++++.+++...
T Consensus 365 LKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~ 444 (898)
T COG5240 365 LKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEND 444 (898)
T ss_pred HHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999899999999998887765 8889999999999999
Q ss_pred CcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchH
Q 011744 380 PNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQ 459 (478)
Q Consensus 380 ~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~ 459 (478)
|+.+|.+++.|+++++|++.+++.-.+..++|+.|+..++|..+++++++++..|+..||.+.+.|+.|++....+.-..
T Consensus 445 p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~ 524 (898)
T COG5240 445 PDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP 524 (898)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999998765443355
Q ss_pred HHHHHHHHHHH
Q 011744 460 QMIQVTLKYYT 470 (478)
Q Consensus 460 ~~~~~~l~~~~ 470 (478)
+-+..+++-|.
T Consensus 525 ~sv~~~lkRcl 535 (898)
T COG5240 525 QSVENALKRCL 535 (898)
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.68 E-value=2.1e-14 Score=150.31 Aligned_cols=414 Identities=17% Similarity=0.183 Sum_probs=297.3
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHH-HHHHHHhh
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEY-LCDPLQRC 89 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~~-l~~~i~~~ 89 (478)
.+.+-+.++|+..|-++--+++.+. ++|.+-...+.+.+-+.|++|+||..|+-++..+. .|+.++. +.+.+.++
T Consensus 83 ~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~l 160 (526)
T PF01602_consen 83 SLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQL 160 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHH
T ss_pred HHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhh
Confidence 4455788999999999988888875 67888888999999999999999999999999884 6788877 79999999
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcc----cccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHH
Q 011744 90 LKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSK 165 (478)
Q Consensus 90 l~~~~~~VRk~A~~al~~i~~~~p----~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~ 165 (478)
+.|+++.|+..|+.++..+ +..| +.++ .+.+.+.+++.+.+|-++..++..+..+.+..+..... ...+..
T Consensus 161 L~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~--~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~ 235 (526)
T PF01602_consen 161 LSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP--KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEP 235 (526)
T ss_dssp TTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH--HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHH
T ss_pred ccCCcchhHHHHHHHHHHH-ccCcchhhhhHH--HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHH
Confidence 9999999999999999988 3333 2344 68899999999999999999999999888766432210 234455
Q ss_pred HHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhH
Q 011744 166 LLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (478)
Q Consensus 166 Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (478)
+...+...++-......+.+..+.+. +.....+++.+..++.++++.+++-+.+.+..+... .+..+. .....
T Consensus 236 l~~~l~s~~~~V~~e~~~~i~~l~~~-~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~--~~~~v~----~~~~~ 308 (526)
T PF01602_consen 236 LLNLLQSSSPSVVYEAIRLIIKLSPS-PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS--NPPAVF----NQSLI 308 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH--CHHHHG----THHHH
T ss_pred HHHHhhccccHHHHHHHHHHHHhhcc-hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc--cchhhh----hhhhh
Confidence 55555444555566677777776664 335678899999999999999999999999887532 222221 11112
Q ss_pred HHHhh-cCChhHHHHHHHHHHHHHhhCc--cchhhccceeeeccCCChhHHHHHHHHHHHhcC--cccHHHHHHHHHHhh
Q 011744 246 LVTLL-SAEPEIQYVALRNINLIVQRRP--TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLAS--DRNIDQVLLEFKEYA 320 (478)
Q Consensus 246 l~~ll-~~~~~ir~~aL~~l~~l~~~~~--~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~--~~n~~~Iv~~L~~~l 320 (478)
+..+. ++++.+|..+++.+..++.... .++....+.+ ...+|..+|+.++..+..++. +.+.+..++.+.+.+
T Consensus 309 ~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l--~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll 386 (526)
T PF01602_consen 309 LFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYL--SELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL 386 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH
T ss_pred hheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHH--HhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh
Confidence 23444 4678899999999999987532 2333222221 133466799999999988874 466788899999999
Q ss_pred hhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHhhCCc--chHHHHHHHHhhcCCC
Q 011744 321 TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKI-KVNYVVQEAIIVIKDIFRRYPN--TYESIIATLCESLDTL 397 (478)
Q Consensus 321 ~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~-~~~~v~~~~~~~l~~i~~~~~~--~~~~~i~~L~~~l~~~ 397 (478)
...+..+..+++..+..+..+.+....+.++.+.+.+.+ ..+.+...++..+++.....++ ....++..+.+....
T Consensus 387 ~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~- 465 (526)
T PF01602_consen 387 EISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIE- 465 (526)
T ss_dssp HCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTT-
T ss_pred hhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhcc-
Confidence 887778888999999998888888888889999998887 4456778888899988776655 445566666665544
Q ss_pred ChhhHHHHHHHHhhcccCccC--C-HHHHHHHHhhcCC--CCCHHHHHHHH
Q 011744 398 DEPEAKASMIWIIGEYAERID--N-ADELLESFLESFP--EEPAQVQLQLL 443 (478)
Q Consensus 398 ~~~~~~~~~~~ilGE~~~~~~--~-~~~~l~~l~~~~~--~~~~~vk~~il 443 (478)
.++.++..+.-.+.......+ . .+.+++.+.+-.. ..+.+||.-..
T Consensus 466 ~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~ 516 (526)
T PF01602_consen 466 ESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAR 516 (526)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 356677666666555544444 2 2355555543333 56888876543
No 13
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3e-14 Score=140.80 Aligned_cols=326 Identities=18% Similarity=0.201 Sum_probs=233.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCC----Chhhhh----HHHHHHHHhhcC-CCChHHHHHHHHHHHHHHhhcc---ccc
Q 011744 49 NTFVKDSQDPNPLIRALAVRTMGCI----RVDKIT----EYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINA---ELV 116 (478)
Q Consensus 49 n~l~kdL~~~n~~vr~~AL~~l~~i----~~~e~~----~~l~~~i~~~l~-~~~~~VRk~A~~al~~i~~~~p---~~~ 116 (478)
+.+...+.|.++..+..|...+..+ ..|.+. ..++|.+.+++. +.+|.++..|+.|+.+|....+ ..+
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 4444555555655454444433322 222222 246778888886 6789999999999999998554 344
Q ss_pred ccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCc-ccccHHHHHHHHHhcccCChhh-HHHHHHHHhhccCCC--
Q 011744 117 EDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI-FEITSHTLSKLLTALNECTEWG-QVFILDALSRYKAAD-- 192 (478)
Q Consensus 117 ~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~~Ll~~l~~~~~~~-q~~ll~~l~~~~~~~-- 192 (478)
.+++.+|.+..|+.+++..|+..|+.+++.|+.+.+..+ +-+..+.+..|+..+...++.. ...+.+.|+++++..
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 556899999999999999999999999999987764321 3344567888888887666622 224677777776332
Q ss_pred --h-HHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHH
Q 011744 193 --A-REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLI 267 (478)
Q Consensus 193 --~-~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l 267 (478)
+ +....+++.+..++++.++.|+-+|+.++.++++ +.++.++.+++ .+++.++.+|. ++++++-.||++++.+
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd--g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD--GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 1 4566889999999999999999999999999875 35677776666 67788999996 7889999999999998
Q ss_pred HhhCcc---chhh--ccceeee-cc-CCChhHHHHHHHHHHHhcC--cccHH-----HHHHHHHHhhhhcCHHHHHHHHH
Q 011744 268 VQRRPT---ILAH--EIKVFFC-KY-NDPIYVKMEKLEIMIKLAS--DRNID-----QVLLEFKEYATEVDVDFVRKAVR 333 (478)
Q Consensus 268 ~~~~~~---~~~~--~~~~~~~-l~-~dd~~ir~~al~lL~~l~~--~~n~~-----~Iv~~L~~~l~~~d~~~r~~~v~ 333 (478)
+.-+.. .+.. -++.|.. +. ++..+||+.|..++.+++. .+.++ .+++.|+.-++..+.+.|++++.
T Consensus 307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence 765432 1211 1334422 23 3446799999999999864 33333 26788889999999999999999
Q ss_pred HHHHHHhcchhhH------HHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 011744 334 AIGRCAIKLERAA------ERCISVLLELIKIKVNYVVQEAIIVIKDIF 376 (478)
Q Consensus 334 ~i~~l~~~~~~~~------~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~ 376 (478)
+|+.++..-.+.. .-+++.+.++|...+..+..-+...+..++
T Consensus 387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENIL 435 (514)
T ss_pred HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHH
Confidence 9999887643221 235788888887777666666666666655
No 14
>PRK09687 putative lyase; Provisional
Probab=99.63 E-value=2.6e-14 Score=135.25 Aligned_cols=251 Identities=16% Similarity=0.141 Sum_probs=172.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 126 (478)
.++.|.+-|.|+|..+|..|...|+.+++++..+. +.+++.|+++.||+.|+.+++++...... . ....+.|.
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~-~~a~~~L~ 96 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRL----AIELCSSKNPIERDIGADILSQLGMAKRC--Q-DNVFNILN 96 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCCCccc--h-HHHHHHHH
Confidence 46778888999999999999999999998777766 77788999999999999999997542211 1 13567777
Q ss_pred Hh-hcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhh
Q 011744 127 DL-ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (478)
Q Consensus 127 ~l-L~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~ 205 (478)
.+ ++|+++.|+.+|+.+|+.++.... .|. ...++.+..
T Consensus 97 ~l~~~D~d~~VR~~A~~aLG~~~~~~~----------------------~~~-------------------~~a~~~l~~ 135 (280)
T PRK09687 97 NLALEDKSACVRASAINATGHRCKKNP----------------------LYS-------------------PKIVEQSQI 135 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhccccccc----------------------ccc-------------------hHHHHHHHH
Confidence 65 789999999999999988753221 010 013333444
Q ss_pred hhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccceeee
Q 011744 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFC 284 (478)
Q Consensus 206 ~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~ 284 (478)
.+.+.++.|++.++..++.+ ++++ .++.|+.+++ +++.+|+.|..+|+.+....|......+. .
T Consensus 136 ~~~D~~~~VR~~a~~aLg~~----~~~~--------ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~---~ 200 (280)
T PRK09687 136 TAFDKSTNVRFAVAFALSVI----NDEA--------AIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVA---M 200 (280)
T ss_pred HhhCCCHHHHHHHHHHHhcc----CCHH--------HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHH---H
Confidence 56677888888888888763 4443 3456666775 57788888888888874334444333222 2
Q ss_pred ccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhc-ccchh
Q 011744 285 KYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK-IKVNY 363 (478)
Q Consensus 285 l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~-~~~~~ 363 (478)
+.+++..||..|+..|..+.++..++.+++ .+.+.+ ++..++.++|.++.. ..+..+.+++. +.+.+
T Consensus 201 L~D~~~~VR~~A~~aLg~~~~~~av~~Li~----~L~~~~--~~~~a~~ALg~ig~~------~a~p~L~~l~~~~~d~~ 268 (280)
T PRK09687 201 LQDKNEEIRIEAIIGLALRKDKRVLSVLIK----ELKKGT--VGDLIIEAAGELGDK------TLLPVLDTLLYKFDDNE 268 (280)
T ss_pred hcCCChHHHHHHHHHHHccCChhHHHHHHH----HHcCCc--hHHHHHHHHHhcCCH------hHHHHHHHHHhhCCChh
Confidence 345567888888888888776644444444 444433 667777777777652 46777777775 55566
Q ss_pred HHHHHHHHH
Q 011744 364 VVQEAIIVI 372 (478)
Q Consensus 364 v~~~~~~~l 372 (478)
|...+++.+
T Consensus 269 v~~~a~~a~ 277 (280)
T PRK09687 269 IITKAIDKL 277 (280)
T ss_pred HHHHHHHHH
Confidence 666665554
No 15
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.59 E-value=3.4e-13 Score=148.20 Aligned_cols=271 Identities=18% Similarity=0.166 Sum_probs=141.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~ 127 (478)
++.|...|+|++|.+|..|+..|+.++.++..+. +.+.+.|+++.||..|+.++.++....+. .+.+..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~----L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~~ 691 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGPA----LVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALRD 691 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHH----HHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHHH
Confidence 4566666677777777777777777665554443 55666777777777777777665332211 245555
Q ss_pred hhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhh
Q 011744 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (478)
Q Consensus 128 lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l 207 (478)
+|.++|+.|+.+|+.+|..+...+ ...++..+.+.+++.+...++.|...... +.+...+
T Consensus 692 ~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~---------~~l~~~l 751 (897)
T PRK13800 692 HLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDDV---------ESVAGAA 751 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccCc---------HHHHHHh
Confidence 666677777777776666553211 12234445566666666666666554211 1123455
Q ss_pred cCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccceeeecc
Q 011744 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY 286 (478)
Q Consensus 208 ~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~ 286 (478)
.+.++.|+..++..+..+. +++. ...+.|..+++ +++.+|..|+.+|..+... +..... ....+.
T Consensus 752 ~D~~~~VR~~aa~aL~~~~----~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~~~~~~---l~~aL~ 817 (897)
T PRK13800 752 TDENREVRIAVAKGLATLG----AGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCP-PDDVAA---ATAALR 817 (897)
T ss_pred cCCCHHHHHHHHHHHHHhc----cccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-chhHHH---HHHHhc
Confidence 6666666666666666532 1110 01223344553 4566666666666655331 111111 011233
Q ss_pred CCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHH
Q 011744 287 NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQ 366 (478)
Q Consensus 287 ~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~ 366 (478)
++|+.||..|++.|..+.+++.+ +.|...+.|++.++|..++.+|+.+. ......+.+...+++.+..|+.
T Consensus 818 d~d~~VR~~Aa~aL~~l~~~~a~----~~L~~~L~D~~~~VR~~A~~aL~~~~-----~~~~a~~~L~~al~D~d~~Vr~ 888 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAADVAV----PALVEALTDPHLDVRKAAVLALTRWP-----GDPAARDALTTALTDSDADVRA 888 (897)
T ss_pred CCChHHHHHHHHHHHhccccchH----HHHHHHhcCCCHHHHHHHHHHHhccC-----CCHHHHHHHHHHHhCCCHHHHH
Confidence 44556666666666665544333 33333344666666666666665541 1112344444555555555665
Q ss_pred HHHHHH
Q 011744 367 EAIIVI 372 (478)
Q Consensus 367 ~~~~~l 372 (478)
+++..|
T Consensus 889 ~A~~aL 894 (897)
T PRK13800 889 YARRAL 894 (897)
T ss_pred HHHHHH
Confidence 555544
No 16
>PTZ00429 beta-adaptin; Provisional
Probab=99.58 E-value=4.8e-12 Score=133.64 Aligned_cols=391 Identities=14% Similarity=0.136 Sum_probs=196.1
Q ss_pred HHHHhhcCCCCHHHHHHHHH-HhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Q 011744 49 NTFVKDSQDPNPLIRALAVR-TMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (478)
Q Consensus 49 n~l~kdL~~~n~~vr~~AL~-~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~ 127 (478)
+.|++.|+++|...|..|++ .++.+....=+..+.+.|.+++.+++..+||-..+.+.+..+..|+... -.++.+.+
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal--LaINtl~K 112 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL--LAVNTFLQ 112 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH--HHHHHHHH
Confidence 44556666666655555555 2222211122334555566666666666666666666665555555432 13455555
Q ss_pred hhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHH--HHHHHHHhhh
Q 011744 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE--AENIVERVTP 205 (478)
Q Consensus 128 lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~--~~~~l~~l~~ 205 (478)
=+.|+||.+|..|+..++.|.... +.......+.+.+.+.+|+..-...-.+.++...+++. ...+++.+..
T Consensus 113 Dl~d~Np~IRaLALRtLs~Ir~~~------i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~ 186 (746)
T PTZ00429 113 DTTNSSPVVRALAVRTMMCIRVSS------VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE 186 (746)
T ss_pred HcCCCCHHHHHHHHHHHHcCCcHH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH
Confidence 555666666666666665543211 11122333334444556665443222221111111111 1234555566
Q ss_pred hhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccc-eee
Q 011744 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIK-VFF 283 (478)
Q Consensus 206 ~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~-~~~ 283 (478)
++.+.|+.|+..|+.++..+.+. +|+.+. ........+...+. -++=.+...|+.+......+.+.....+. ...
T Consensus 187 LL~D~dp~Vv~nAl~aL~eI~~~--~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~ 263 (746)
T PTZ00429 187 LLNDNNPVVASNAAAIVCEVNDY--GSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLP 263 (746)
T ss_pred HhcCCCccHHHHHHHHHHHHHHh--CchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 67777777777777777766431 222221 11122222333332 23334555555554322111111111111 111
Q ss_pred eccCCChhHHHHHHHHHHHhcCc---ccHHHHHHHHH---HhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Q 011744 284 CKYNDPIYVKMEKLEIMIKLASD---RNIDQVLLEFK---EYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELI 357 (478)
Q Consensus 284 ~l~~dd~~ir~~al~lL~~l~~~---~n~~~Iv~~L~---~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll 357 (478)
.+.+.+..|-..|+.+++.+.+. +-++.++..+. -.+.+.+++++.-+++.|..+..++|......++.+.-..
T Consensus 264 ~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~ 343 (746)
T PTZ00429 264 RMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRY 343 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhccc
Confidence 23344567777777777776643 22233332222 1344556777777777777777777655555555444433
Q ss_pred cccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC-HHHHHHHHhhcCCCCCH
Q 011744 358 KIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPA 436 (478)
Q Consensus 358 ~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~-~~~~l~~l~~~~~~~~~ 436 (478)
.+ ..+++...++.+..+. +++-.+.++..|.+|..+. +++.++.++-.+|.-+..++. ...+++.+.+-+.. +.
T Consensus 344 ~D-p~yIK~~KLeIL~~La--ne~Nv~~IL~EL~eYa~d~-D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~-~~ 418 (746)
T PTZ00429 344 SD-PPFVKLEKLRLLLKLV--TPSVAPEILKELAEYASGV-DMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDR-RP 418 (746)
T ss_pred CC-cHHHHHHHHHHHHHHc--CcccHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcC-Cc
Confidence 33 3357777777776665 3344456677777776654 456666777777776655543 44555555443322 22
Q ss_pred HHHHHHHHHHHHHhccCCC
Q 011744 437 QVQLQLLTATVKLFLKKPT 455 (478)
Q Consensus 437 ~vk~~il~a~~Kl~~~~~~ 455 (478)
++....+..+-.+..++|.
T Consensus 419 ~~v~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 419 ELLPQVVTAAKDIVRKYPE 437 (746)
T ss_pred hhHHHHHHHHHHHHHHCcc
Confidence 3344566677777667775
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.55 E-value=2.8e-12 Score=141.11 Aligned_cols=288 Identities=17% Similarity=0.170 Sum_probs=187.7
Q ss_pred CHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHH
Q 011744 59 NPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (478)
Q Consensus 59 n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~ 138 (478)
-+..|-.|+..|.+ + -.+.+...|.|++|.||+.|+.++.++.. | ..++.|..+|+|+|+.|+.
T Consensus 607 ~~~~~~~~~~~l~~---~-----~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--~------~~~~~L~~aL~D~d~~VR~ 670 (897)
T PRK13800 607 PPSPRILAVLALDA---P-----SVAELAPYLADPDPGVRRTAVAVLTETTP--P------GFGPALVAALGDGAAAVRR 670 (897)
T ss_pred CchHHHHHHHhccc---h-----hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--h------hHHHHHHHHHcCCCHHHHH
Confidence 44566667777622 2 23457788899999999999999998642 2 4668899999999999999
Q ss_pred HHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHH
Q 011744 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA 218 (478)
Q Consensus 139 ~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea 218 (478)
.|+.+|.++....+. ...+...|.+.+|+.+..+++.|......+. ..+...+.+.++.|+.+|
T Consensus 671 ~Aa~aL~~l~~~~~~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~d~~VR~~A 734 (897)
T PRK13800 671 AAAEGLRELVEVLPP---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------ALFAAALGDPDHRVRIEA 734 (897)
T ss_pred HHHHHHHHHHhccCc---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCCCHHHHHHH
Confidence 999999888543211 1234455566788888888888776543321 133456788888888888
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHH
Q 011744 219 VKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKL 297 (478)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al 297 (478)
++.+..+ ..++ .+..++. .++.+|..+...|..+....+..+.... ..+.++|+.||..|+
T Consensus 735 v~aL~~~----~~~~-----------~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~---~ll~D~d~~VR~aA~ 796 (897)
T PRK13800 735 VRALVSV----DDVE-----------SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVR---ALTGDPDPLVRAAAL 796 (897)
T ss_pred HHHHhcc----cCcH-----------HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHH---HHhcCCCHHHHHHHH
Confidence 8888763 2222 2234454 5778888888888877654432222111 123455677888888
Q ss_pred HHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 011744 298 EIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (478)
Q Consensus 298 ~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~ 377 (478)
..|..++++..+ ++.+...+.++|+.+|..++.+++.+.. +..++.+..+|++.+..|+.+++..|..+ .
T Consensus 797 ~aLg~~g~~~~~---~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~ 866 (897)
T PRK13800 797 AALAELGCPPDD---VAAATAALRASAWQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTRW-P 866 (897)
T ss_pred HHHHhcCCcchh---HHHHHHHhcCCChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhcc-C
Confidence 888777665332 2335555667777788888887776542 23457777777777777888888777764 1
Q ss_pred hCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhh
Q 011744 378 RYPNTYESIIATLCESLDTLDEPEAKASMIWIIG 411 (478)
Q Consensus 378 ~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilG 411 (478)
.. ..+...|...+++ .++.+++.+...|+
T Consensus 867 ~~----~~a~~~L~~al~D-~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 GD----PAARDALTTALTD-SDADVRAYARRALA 895 (897)
T ss_pred CC----HHHHHHHHHHHhC-CCHHHHHHHHHHHh
Confidence 11 1234455555555 35667766666554
No 18
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=3.2e-11 Score=118.05 Aligned_cols=363 Identities=18% Similarity=0.180 Sum_probs=251.5
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhc-----ccCchHHHHHHHHHHhhcC-CCCHHHH-----HHHHHHhcC-CChhhhhH
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYA-----KSQPDLAILAVNTFVKDSQ-DPNPLIR-----ALAVRTMGC-IRVDKITE 80 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~-----~~~~e~~~l~in~l~kdL~-~~n~~vr-----~~AL~~l~~-i~~~e~~~ 80 (478)
.+.+.++.+-|+-|+.+-+-+..+. +.+.+-..=+|..+-+|.. +++...| ++|.-++|- ..+....+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 4667788888888888877666543 2234444556666777773 4444333 333333332 12333788
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCC-ccc
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFE 157 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~-~~~ 157 (478)
.+.|+|..++.|.+..||--|+.+++.+.+.....+.. +.+.+.+.++..|.|..|+.+| .++..+.+.-..+ .-.
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~t 162 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESAST 162 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccc
Confidence 89999999999999999999999999999866543321 2456778888899999999776 5555554432111 112
Q ss_pred ccHHHHHHHHH-hcccCChhhHHHHHHHHhhccCCChHHH----HHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcC-C
Q 011744 158 ITSHTLSKLLT-ALNECTEWGQVFILDALSRYKAADAREA----ENIVERVTPRLQHANCAVVLSAVKMILQQMELIT-S 231 (478)
Q Consensus 158 ~~~~~~~~Ll~-~l~~~~~~~q~~ll~~l~~~~~~~~~~~----~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~-~ 231 (478)
+..+.+..+++ .+...+|...+.++..+..+....+-+. ..++.-+..+|.+++..|+.-+-.++..+...+. +
T Consensus 163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 33345556665 4666789999999888887654443333 2466667778899999999777777766554342 4
Q ss_pred hHHHHHHHHHhhhHHHHhh-cCChhHHHHHHHHHHHHHhhCccchhhccc-----eeeeccCCCh-hHHHHHHH---HHH
Q 011744 232 TDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-----VFFCKYNDPI-YVKMEKLE---IMI 301 (478)
Q Consensus 232 ~~~~~~~~~~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~-----~~~~l~~dd~-~ir~~al~---lL~ 301 (478)
|+.++. .++++.++.-+ ++++.++..|+.++..+++..|..+-++.+ ++-|+.+++. +++-.|.. .+.
T Consensus 243 P~s~d~--~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 243 PSSMDY--DDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred ccccCc--ccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 443221 35666666555 589999999999999999998876665543 3456655553 45554433 355
Q ss_pred HhcCcc------cHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchh----hHHHHHHHHHHHhcccchhHHHHHHHH
Q 011744 302 KLASDR------NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIKVNYVVQEAIIV 371 (478)
Q Consensus 302 ~l~~~~------n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~----~~~~~i~~ll~ll~~~~~~v~~~~~~~ 371 (478)
+++.+. .+..|++-+..|+.+...+.|..+++.|.-+-.++|. ....+.+++++-|++..+.|..-+...
T Consensus 321 ~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 321 KLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred HHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHH
Confidence 555433 2348999999999999999999999999888888763 345788999999999999999989998
Q ss_pred HHHHHhh
Q 011744 372 IKDIFRR 378 (478)
Q Consensus 372 l~~i~~~ 378 (478)
+..+...
T Consensus 401 la~i~~s 407 (675)
T KOG0212|consen 401 LASICSS 407 (675)
T ss_pred HHHHhcC
Confidence 8888754
No 19
>PRK09687 putative lyase; Provisional
Probab=99.53 E-value=1.8e-12 Score=122.75 Aligned_cols=221 Identities=15% Similarity=0.137 Sum_probs=156.5
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhh-hHHHHHHHHhh-c
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI-TEYLCDPLQRC-L 90 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~-~~~l~~~i~~~-l 90 (478)
+.+.++.+++..+|.-+.-++..+.. ++. ...+.+-++|+|+.+|..|...|+.++.+.- .+...+.+..+ +
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~--~~~----~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~ 100 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG--QDV----FRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL 100 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc--chH----HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh
Confidence 45668899999999998888876653 233 3455566889999999999999999986532 23455667766 6
Q ss_pred CCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhc
Q 011744 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL 170 (478)
Q Consensus 91 ~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l 170 (478)
.|+++.||..|+.+++++....+... ....+.+..++.|+++.|+..|+.+|+.+... ..+..|+..+
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~~~~--~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~----------~ai~~L~~~L 168 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNPLYS--PKIVEQSQITAFDKSTNVRFAVAFALSVINDE----------AAIPLLINLL 168 (280)
T ss_pred cCCCHHHHHHHHHHHhcccccccccc--hHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHh
Confidence 88999999999999999854333211 24567788889999999999999999876432 3566777777
Q ss_pred ccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhh
Q 011744 171 NECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL 250 (478)
Q Consensus 171 ~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll 250 (478)
.+.+++........|+.....++ ...+.+...+.+.++.|+.+|+..++.+ +++ .+++.|+..+
T Consensus 169 ~d~~~~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~~--------~av~~Li~~L 232 (280)
T PRK09687 169 KDPNGDVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEAIIGLALR----KDK--------RVLSVLIKEL 232 (280)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHHHHHHHcc----CCh--------hHHHHHHHHH
Confidence 77788877777777777643222 3556666777888888888888888764 343 2445556655
Q ss_pred cCChhHHHHHHHHHHHHH
Q 011744 251 SAEPEIQYVALRNINLIV 268 (478)
Q Consensus 251 ~~~~~ir~~aL~~l~~l~ 268 (478)
.++. +++.+..+++.+.
T Consensus 233 ~~~~-~~~~a~~ALg~ig 249 (280)
T PRK09687 233 KKGT-VGDLIIEAAGELG 249 (280)
T ss_pred cCCc-hHHHHHHHHHhcC
Confidence 5322 4555555555544
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.52 E-value=1e-10 Score=132.72 Aligned_cols=439 Identities=13% Similarity=0.151 Sum_probs=292.4
Q ss_pred hHHHHHHhccC-CChhHHHHHHHHHHHhcccCchHHHHHH-----HHHHhhcCCCC---------HHHHHHHHHHhcCCC
Q 011744 10 LFTDVVNCMQT-ENLELKKLVYLYLINYAKSQPDLAILAV-----NTFVKDSQDPN---------PLIRALAVRTMGCIR 74 (478)
Q Consensus 10 ~~~~ii~l~~s-~~~~~Krl~yl~l~~~~~~~~e~~~l~i-----n~l~kdL~~~n---------~~vr~~AL~~l~~i~ 74 (478)
+.+..++++.+ ++...|.-+--++..+...+++....++ +.|.+-+++++ ...+..|..+|+|+.
T Consensus 232 aVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIc 311 (2102)
T PLN03200 232 AVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANIC 311 (2102)
T ss_pred CHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHh
Confidence 45778888865 5568888887788888877777544433 45555555443 345788888888864
Q ss_pred h--hhhhHH------------------------------------------HHHHHHhhcCCCChH-HHHHHHHHHHHHH
Q 011744 75 V--DKITEY------------------------------------------LCDPLQRCLKDDDPY-VRKTAAICVAKLY 109 (478)
Q Consensus 75 ~--~e~~~~------------------------------------------l~~~i~~~l~~~~~~-VRk~A~~al~~i~ 109 (478)
. +.+++. +.+.+.+++++++|. |...++.|+..++
T Consensus 312 gg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~ 391 (2102)
T PLN03200 312 GGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLY 391 (2102)
T ss_pred CCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhc
Confidence 3 111111 123455555555443 3444555543322
Q ss_pred hhc--ccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccc--cHHHHHHHHHhcccCChhhHHHHHHHH
Q 011744 110 DIN--AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECTEWGQVFILDAL 185 (478)
Q Consensus 110 ~~~--p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~--~~~~~~~Ll~~l~~~~~~~q~~ll~~l 185 (478)
... ...+.+.+..+.|..++...+..++..++.++..++..+.. .+.. ..+.++.|++.|...++-.|...++.+
T Consensus 392 gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e-~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L 470 (2102)
T PLN03200 392 GNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGG-LWEALGGREGVQLLISLLGLSSEQQQEYAVALL 470 (2102)
T ss_pred CChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 210 01122234557777788878889999999999998865422 2221 123466777777777777777778888
Q ss_pred hhccCCChHHHH-----HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHH-H-HhhhHHHHhhc-CChhHH
Q 011744 186 SRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-K-KMAPPLVTLLS-AEPEIQ 257 (478)
Q Consensus 186 ~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~-~-~~~~~l~~ll~-~~~~ir 257 (478)
+.+...+++... ..++.+..+|++.+..++-+|+.++.++.. +++-.+.++ + .++++|+.++. .+++.|
T Consensus 471 ~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~---~~~qir~iV~~aGAIppLV~LL~sgd~~~q 547 (2102)
T PLN03200 471 AILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCC---HSEDIRACVESAGAVPALLWLLKNGGPKGQ 547 (2102)
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC---CcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 777655444332 357788899999999999999999999753 223333333 2 57888999996 689999
Q ss_pred HHHHHHHHHHHhhC-ccchhhccceeeeccCCChhHHHHHHHHHHHhcC---ccc-H------HHHHHHHHHhhhhcCHH
Q 011744 258 YVALRNINLIVQRR-PTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLAS---DRN-I------DQVLLEFKEYATEVDVD 326 (478)
Q Consensus 258 ~~aL~~l~~l~~~~-~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~---~~n-~------~~Iv~~L~~~l~~~d~~ 326 (478)
..|+.+|..+.... ++.+.+... .+..++..++..+++.+.++.+ .+. . ..-++.|.+.+++.+.+
T Consensus 548 ~~Aa~AL~nLi~~~d~~~I~~Lv~---LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ 624 (2102)
T PLN03200 548 EIAAKTLTKLVRTADAATISQLTA---LLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEE 624 (2102)
T ss_pred HHHHHHHHHHHhccchhHHHHHHH---HhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHH
Confidence 99999999998753 333333222 2456667788888888866543 211 1 13567788888888999
Q ss_pred HHHHHHHHHHHHHhcchhh-----HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCC-cch-----HHHHHHHHhhcC
Q 011744 327 FVRKAVRAIGRCAIKLERA-----AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP-NTY-----ESIIATLCESLD 395 (478)
Q Consensus 327 ~r~~~v~~i~~l~~~~~~~-----~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~-~~~-----~~~i~~L~~~l~ 395 (478)
.+++++..|..++..-+.. ....+..++.+++.++..+..++...+.++.+... +.+ ..++..|++.+.
T Consensus 625 ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~ 704 (2102)
T PLN03200 625 TQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK 704 (2102)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh
Confidence 9999999998887643221 23457889999999999999999999999885322 222 225777888887
Q ss_pred CCChhhHHHHHHHHhhcccCccCCH-----HHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCc
Q 011744 396 TLDEPEAKASMIWIIGEYAERIDNA-----DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE 456 (478)
Q Consensus 396 ~~~~~~~~~~~~~ilGE~~~~~~~~-----~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~ 456 (478)
. +++++...++-.++......+.. .+.+..+..-+...++++|.....++..++.++|.+
T Consensus 705 ~-~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~ 769 (2102)
T PLN03200 705 S-SSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD 769 (2102)
T ss_pred C-CChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh
Confidence 6 46667777766666655433221 244566666666778999999999999999999875
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.51 E-value=3e-11 Score=136.95 Aligned_cols=417 Identities=16% Similarity=0.171 Sum_probs=293.7
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcccCchHHHH-----HHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhH-----
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITE----- 80 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~----- 80 (478)
..+.++++.+.+.+.-+-.++..+.+.+.+.... +++.|.+-|.++++.++..|.++++++. +++-..
T Consensus 408 ~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea 487 (2102)
T PLN03200 408 VLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAA 487 (2102)
T ss_pred hhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 4566777788888888888888888776664332 5678899999999999999999998874 333222
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc---cccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCccc
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE 157 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p---~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~ 157 (478)
..+|.+.++|.++++.+|+.|+.++.++....+ ..+...+.++.|.++|++.++.++..|+.++..+......
T Consensus 488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~---- 563 (2102)
T PLN03200 488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA---- 563 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch----
Confidence 468999999999999999999999999976332 2343457889999999999999999999999998765322
Q ss_pred ccHHHHHHHHHhcccCChhhHHHHHHHHhhccCC-ChHH-------HHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhc
Q 011744 158 ITSHTLSKLLTALNECTEWGQVFILDALSRYKAA-DARE-------AENIVERVTPRLQHANCAVVLSAVKMILQQMELI 229 (478)
Q Consensus 158 ~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~-~~~~-------~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~ 229 (478)
..++.++..+...++-.+...++.++..... +..+ ....++.+..++++.+..+.-+|+.++..++.
T Consensus 564 ---~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-- 638 (2102)
T PLN03200 564 ---ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS-- 638 (2102)
T ss_pred ---hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc--
Confidence 2345666666666777777778877654321 1111 12468888999999999999999999988764
Q ss_pred CChHHHHHH-HHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc--c---chhhc-ccee-eeccCCChhHHHHHHHHH
Q 011744 230 TSTDVVRNL-CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--T---ILAHE-IKVF-FCKYNDPIYVKMEKLEIM 300 (478)
Q Consensus 230 ~~~~~~~~~-~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~--~---~~~~~-~~~~-~~l~~dd~~ir~~al~lL 300 (478)
.+++..+.+ ....+++++.+++ .+.+++..+..+|..+..... + ++... ++.+ ..+.+.|..++..++..|
T Consensus 639 ~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~AL 718 (2102)
T PLN03200 639 SRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCAL 718 (2102)
T ss_pred CChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHH
Confidence 344444433 2367889999996 678899999999999985321 1 12221 3332 334566788999999999
Q ss_pred HHhcCc-ccHH-----HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhH--------HHHHHHHHHHhcccchhH--
Q 011744 301 IKLASD-RNID-----QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA--------ERCISVLLELIKIKVNYV-- 364 (478)
Q Consensus 301 ~~l~~~-~n~~-----~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~--------~~~i~~ll~ll~~~~~~v-- 364 (478)
.+++.. ++.. ..++.|..++++.+++.|+.++.++..++..++.+. ...+..++++|+..+...
T Consensus 719 anLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 719 ANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 998754 3333 357889999999999999999999999998886332 234677888888766543
Q ss_pred HHHHHHHHHHHHhh-------CCcch-----HHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccC--------CHHHHH
Q 011744 365 VQEAIIVIKDIFRR-------YPNTY-----ESIIATLCESLDTLDEPEAKASMIWIIGEYAERID--------NADELL 424 (478)
Q Consensus 365 ~~~~~~~l~~i~~~-------~~~~~-----~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~--------~~~~~l 424 (478)
..++.+++..+.+. .|... ...++.|++++ ....|.+...++.++...|..-+ +.+..+
T Consensus 799 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~ 877 (2102)
T PLN03200 799 TSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCI 877 (2102)
T ss_pred HHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchH
Confidence 34678888777653 11110 12356676777 33567777777777766664422 234555
Q ss_pred HHHhhcCC-CCCHHHH
Q 011744 425 ESFLESFP-EEPAQVQ 439 (478)
Q Consensus 425 ~~l~~~~~-~~~~~vk 439 (478)
..+.++.. ..+.+||
T Consensus 878 ~~~~~~~~~~~~~~~~ 893 (2102)
T PLN03200 878 SSLADRIINSSSLEVK 893 (2102)
T ss_pred HHHHHHHhhcCCceEE
Confidence 55555543 3445555
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=9.5e-10 Score=116.58 Aligned_cols=436 Identities=15% Similarity=0.177 Sum_probs=280.5
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhc-CCCCHHHHHHHHHHhcCCC-------hhhhhHH
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDS-QDPNPLIRALAVRTMGCIR-------VDKITEY 81 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL-~~~n~~vr~~AL~~l~~i~-------~~e~~~~ 81 (478)
.+-+.+.-+.|+|-..||-+--++...+...+ +.+.|..-+ .+.||.+|.+|.-.+-++. +.|.-+.
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 45567777888888889999999988877765 244444444 4689999999976544432 3455556
Q ss_pred HHHHHHhhcCC-CChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCccccc
Q 011744 82 LCDPLQRCLKD-DDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (478)
Q Consensus 82 l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~ 159 (478)
+-..+..++.+ +.+.||+|-+..+..+++. .|+..+ ++.+.+.+..+++|+..|..|+..+..+...-+...-..+
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WP--ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~ 157 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWP--ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL 157 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchH--HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH
Confidence 66666666665 7889999999999999884 355333 4567777788999999999999999887654322111111
Q ss_pred HHHHHHHHHhcccCChhhHHHHHHHHhhccCC---ChHHHH---H----HHHHhhhhhcCCChHHHHHHHHHHHHhhhhc
Q 011744 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAA---DAREAE---N----IVERVTPRLQHANCAVVLSAVKMILQQMELI 229 (478)
Q Consensus 160 ~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~---~~~~~~---~----~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~ 229 (478)
....+-+.+.+.+++.-..+..+|.+..+... +..+.. . +++.+.+.+...+....-++...+..+..
T Consensus 158 ~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e-- 235 (1075)
T KOG2171|consen 158 DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE-- 235 (1075)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh--
Confidence 12222233345554333555566766655422 222221 2 34444445556666666666666666643
Q ss_pred CChHHHHHHHHHhhhHHHHhhc-C--ChhHHHHHHHHHHHHHhhCccchhhc-------cc-------------eee---
Q 011744 230 TSTDVVRNLCKKMAPPLVTLLS-A--EPEIQYVALRNINLIVQRRPTILAHE-------IK-------------VFF--- 283 (478)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~ll~-~--~~~ir~~aL~~l~~l~~~~~~~~~~~-------~~-------------~~~--- 283 (478)
..|..++.....++..-..... + ++.+|..||+.|..+++..|...+.+ +. ...
T Consensus 236 ~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 236 SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 3566666544455443233332 3 57899999999999987644322111 00 000
Q ss_pred eccCC----ChhHHHHHHHHH-HHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch----hhHHHHHHHHH
Q 011744 284 CKYND----PIYVKMEKLEIM-IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLL 354 (478)
Q Consensus 284 ~l~~d----d~~ir~~al~lL-~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~----~~~~~~i~~ll 354 (478)
-..+| +..+..+++|.+ ..|+.+.-...+++.+-.++++.++..|..++.+|+.+++-.+ +....+++.++
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVL 395 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 11111 245666777776 4466666677888888899999999999999999999998653 35567888999
Q ss_pred HHhcccchhHHHHHHHHHHHHHhhC-CcchH----HHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC------HHHH
Q 011744 355 ELIKIKVNYVVQEAIIVIKDIFRRY-PNTYE----SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN------ADEL 423 (478)
Q Consensus 355 ~ll~~~~~~v~~~~~~~l~~i~~~~-~~~~~----~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~------~~~~ 423 (478)
+.+.+..+.|+..+...++++-... |+.++ ++...|...+++...+.+...++-.+=++.+..++ =+.+
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~l 475 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGL 475 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 9999999999999999999997653 44443 34445666667766777755555444433333222 1233
Q ss_pred HHHHhhc-CCCCCHHHHHHHHHHHHHHhccCC
Q 011744 424 LESFLES-FPEEPAQVQLQLLTATVKLFLKKP 454 (478)
Q Consensus 424 l~~l~~~-~~~~~~~vk~~il~a~~Kl~~~~~ 454 (478)
+...... ....++.+|.+++||++-++..-.
T Consensus 476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 476 MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 3322222 246789999999999998886543
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.8e-11 Score=120.39 Aligned_cols=272 Identities=17% Similarity=0.200 Sum_probs=189.5
Q ss_pred HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchh
Q 011744 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA 276 (478)
Q Consensus 198 ~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~ 276 (478)
-+++.+....+|.++.++..|+.++..+.. +.+ ..+-.-+++....+..+.+ .+|++|....+++..+...+|+-+.
T Consensus 174 ~mipkfl~f~~h~spkiRs~A~~cvNq~i~-~~~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 174 IMIPKFLQFFKHPSPKIRSHAVGCVNQFII-IQT-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred HhHHHHHHHHhCCChhHHHHHHhhhhheee-cCc-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 467777788899999999999999887643 222 3332223455666566666 5799999999999999999999999
Q ss_pred hcccee-----eeccCCChhHHHHHHHHHHHhcCcccH--------HHHHHHHHHhhhhcC-------------------
Q 011744 277 HEIKVF-----FCKYNDPIYVKMEKLEIMIKLASDRNI--------DQVLLEFKEYATEVD------------------- 324 (478)
Q Consensus 277 ~~~~~~-----~~l~~dd~~ir~~al~lL~~l~~~~n~--------~~Iv~~L~~~l~~~d------------------- 324 (478)
+|+..+ ..-.+.|..|..+|.+....+++..-. +.+++-|+.-+..+|
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDre 331 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDRE 331 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchh
Confidence 997632 112345678999999999999876533 334555543222110
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHhcccchhHHH
Q 011744 325 -------------------------------------VDFVRKAVRAIGRCAIKLERA-AERCISVLLELIKIKVNYVVQ 366 (478)
Q Consensus 325 -------------------------------------~~~r~~~v~~i~~l~~~~~~~-~~~~i~~ll~ll~~~~~~v~~ 366 (478)
..+|+-.+.++..++.-|+.. -.-.+..+-+.|+...|.+++
T Consensus 332 eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrE 411 (885)
T KOG2023|consen 332 EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVRE 411 (885)
T ss_pred hhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhh
Confidence 346776777777777766532 223334444445567788999
Q ss_pred HHHHHHHHHHhh-----CCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC--HH----HHHHHHhhcCCCCC
Q 011744 367 EAIIVIKDIFRR-----YPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN--AD----ELLESFLESFPEEP 435 (478)
Q Consensus 367 ~~~~~l~~i~~~-----~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~--~~----~~l~~l~~~~~~~~ 435 (478)
..+.+++-+... +|-+ ..++..++..|++- .|-+|...+|-+|.|+..+.. +. .++..+..++.+.+
T Consensus 412 agvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N 489 (885)
T KOG2023|consen 412 AGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN 489 (885)
T ss_pred hhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc
Confidence 999999988654 2221 34677788888774 577899999999999987643 22 44555667778889
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhh
Q 011744 436 AQVQLQLLTATVKLFLKKPTEGPQQMIQVTLKYYTCLCFK 475 (478)
Q Consensus 436 ~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~~~~~~~ 475 (478)
..||.+.-+|++-+=-.-.+| +-+-+.++|+.-.+ ||.
T Consensus 490 K~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~-af~ 527 (885)
T KOG2023|consen 490 KKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVF-AFG 527 (885)
T ss_pred HHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHH-HHH
Confidence 999999999999886544444 88888888877666 663
No 24
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=2e-11 Score=121.49 Aligned_cols=371 Identities=18% Similarity=0.222 Sum_probs=229.8
Q ss_pred HHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhc-----ccccccccHHHHHHHhhcCCChhhHH
Q 011744 64 ALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-----AELVEDRGFLESLKDLISDNNPMVVA 138 (478)
Q Consensus 64 ~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~-----p~~~~~~~~~~~l~~lL~d~~~~V~~ 138 (478)
+.||..++++-..++.+.+.|.+++.|.++++.||.++++|++.|...+ |.+ + .++|.+.++|+|+.|-||.
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-p--eLip~l~~~L~DKkplVRs 452 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-P--ELIPFLLSLLDDKKPLVRS 452 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-H--HHHHHHHHHhccCccceee
Confidence 5688899999999999999999999999999999999999999998754 332 2 4789999999999999999
Q ss_pred HHHHHHHHHhhhC-CCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH----HHHHHhhhhh---cCC
Q 011744 139 NAVAALAEIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE----NIVERVTPRL---QHA 210 (478)
Q Consensus 139 ~a~~~l~~i~~~~-~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~----~~l~~l~~~l---~~~ 210 (478)
-++..|++-..-- ..+.-..+.+.+..+++.+-+.+-|.|-.....+..+-.+..++.- .++..+...+ ++.
T Consensus 453 ITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~K 532 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKK 532 (885)
T ss_pred eeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888765433 1223456778888999988899999998877777665432222222 3333333222 467
Q ss_pred ChHHHHHHHHHHHHhh-hhcCChHHHHHHHHHhhhHHHH---hhcCChhHHHHHHHHHHHHHhhCccchhhccceeeecc
Q 011744 211 NCAVVLSAVKMILQQM-ELITSTDVVRNLCKKMAPPLVT---LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY 286 (478)
Q Consensus 211 ~~~V~~ea~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~~---ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~ 286 (478)
|--|+|.|+.++..-. .++..|.++ +.+.++|+. +++++.---+.-|++++.++..-..-|-|+..
T Consensus 533 NLlILYDAIgtlAdsvg~~Ln~~~Yi----qiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~------ 602 (885)
T KOG2023|consen 533 NLLILYDAIGTLADSVGHALNKPAYI----QILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQ------ 602 (885)
T ss_pred ceehHHHHHHHHHHHHHHhcCcHHHH----HHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCH------
Confidence 8899999999886532 123455554 467888874 45543334466688888887653333444322
Q ss_pred CCChhHHHHHHHHHH-------HhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchh------hHHHHHHHH
Q 011744 287 NDPIYVKMEKLEIMI-------KLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER------AAERCISVL 353 (478)
Q Consensus 287 ~dd~~ir~~al~lL~-------~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~------~~~~~i~~l 353 (478)
.+=.++.+++- +.-++.+++ ..|.+|..-++.-+.-+++-.+. ......+.+
T Consensus 603 ----~Vy~Rc~~il~~t~q~~~~~~~~~~~~-----------~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~ll 667 (885)
T KOG2023|consen 603 ----PVYQRCFRILQKTLQLLAKVQQDPTVE-----------APDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLL 667 (885)
T ss_pred ----HHHHHHHHHHHHHHHHHHhccCCcccc-----------CCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHH
Confidence 12223333332 222222211 12333322222222222222111 112478899
Q ss_pred HHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhh---HHHHHHHHhhcccCccCC-----HHHHHH
Q 011744 354 LELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPE---AKASMIWIIGEYAERIDN-----ADELLE 425 (478)
Q Consensus 354 l~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~---~~~~~~~ilGE~~~~~~~-----~~~~l~ 425 (478)
++++.+.-..|++.+.-.++++...-++.....+...+..+...-+|+ +-..++|.+||.+-.... -..++.
T Consensus 668 l~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~ 747 (885)
T KOG2023|consen 668 LQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLE 747 (885)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHH
Confidence 999999999999999999999876543322222233333332222333 456789999998866543 122333
Q ss_pred HHhhcC--CCCCHHHHHHHHHHHHHHhccCCCcchHHHHH
Q 011744 426 SFLESF--PEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQ 463 (478)
Q Consensus 426 ~l~~~~--~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~ 463 (478)
.+...+ ......+-.-.--+++|+...+|++ .-+.+.
T Consensus 748 ~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~-vAp~l~ 786 (885)
T KOG2023|consen 748 DLITIINRQNTPKTLLENTAITIGRLGYICPEE-VAPHLD 786 (885)
T ss_pred HHHHHhcccCchHHHHHhhhhhhhhhhccCHHh-cchhHH
Confidence 332221 2233344444455788888878875 444333
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.3e-09 Score=113.65 Aligned_cols=410 Identities=16% Similarity=0.212 Sum_probs=274.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhh-ccccccc--ccHH-HH
Q 011744 50 TFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI-NAELVED--RGFL-ES 124 (478)
Q Consensus 50 ~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~-~p~~~~~--~~~~-~~ 124 (478)
.|...|.+++..+|.-|-+++.++..++- +.+.+...+.+ .+|.||.-|+.-+.|+..+ ++.+-.+ ..+. ..
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~l 84 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSL 84 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 44566777888889999999997753332 66667777754 8999999999988887654 3322111 0222 33
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhcc---CCC-hHHHHHHH
Q 011744 125 LKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---AAD-AREAENIV 200 (478)
Q Consensus 125 l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~---~~~-~~~~~~~l 200 (478)
|.....++.+.|+..-..+..+|++..-+..|. ..+.-|.+..+.++|-.+-..+.+|..+. ... ......++
T Consensus 85 L~~~~~E~~~~vr~k~~dviAeia~~~l~e~WP---ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 85 LEIIQSETEPSVRHKLADVIAEIARNDLPEKWP---ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccccchH---HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 333557899999999999999999887544553 34445555566677766665666665432 111 11223455
Q ss_pred HHhhhhhcCCChHHHHHHHHHHHHhhhhcC-ChHHHHHHHHHhhhHHHHhhc-----CChhHHHHHHHHHHHHHhhCccc
Q 011744 201 ERVTPRLQHANCAVVLSAVKMILQQMELIT-STDVVRNLCKKMAPPLVTLLS-----AEPEIQYVALRNINLIVQRRPTI 274 (478)
Q Consensus 201 ~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~ll~-----~~~~ir~~aL~~l~~l~~~~~~~ 274 (478)
.-+.+.+.+.+..|+..|+++++.+....+ +++..+.+ ..++|.++..+. .|...-..+++.+..++...|.+
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~-~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKF-RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHH-HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 555566777766699999999998876653 33333332 345665554442 34555688999999999999999
Q ss_pred hhhccc-ee-eec---cCC--ChhHHHHHHHHHHHhcCc---------ccHHHHHHHHHHhhhhcC--------------
Q 011744 275 LAHEIK-VF-FCK---YND--PIYVKMEKLEIMIKLASD---------RNIDQVLLEFKEYATEVD-------------- 324 (478)
Q Consensus 275 ~~~~~~-~~-~~l---~~d--d~~ir~~al~lL~~l~~~---------~n~~~Iv~~L~~~l~~~d-------------- 324 (478)
+.+|+. ++ +++ .+. +.++|..||++|..+..- .=...++..++..+.+.+
T Consensus 241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence 999875 22 222 233 479999999999665421 123456777776664321
Q ss_pred --HHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHH----HHHHHHhhcCC
Q 011744 325 --VDFVRKAVRAIGRCAIKLER--AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES----IIATLCESLDT 396 (478)
Q Consensus 325 --~~~r~~~v~~i~~l~~~~~~--~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~----~i~~L~~~l~~ 396 (478)
.+-.+.+.++|-+++-..++ .....+..+-.++...+|+-+..+..++..+...-++..+. ++...+..|.|
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND 400 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence 11334556777777776653 34566777788899999999999999999888765554433 44444556666
Q ss_pred CChhhHHHHHHHHhhcccCccCC------HHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q 011744 397 LDEPEAKASMIWIIGEYAERIDN------ADELLESFLESF-PEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLK 467 (478)
Q Consensus 397 ~~~~~~~~~~~~ilGE~~~~~~~------~~~~l~~l~~~~-~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~ 467 (478)
.+|.++-+++..+|+++..+.. ...+...++... ..+++.|+...-.|+.-++...|.+.+.+.+..+++
T Consensus 401 -phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 401 -PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred -CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4788999999999999877642 122222333333 356889999999999999999888777777777766
No 26
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=5.2e-11 Score=120.03 Aligned_cols=360 Identities=16% Similarity=0.209 Sum_probs=235.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCC---Ch-----hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccccccc
Q 011744 49 NTFVKDSQDPNPLIRALAVRTMGCI---RV-----DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120 (478)
Q Consensus 49 n~l~kdL~~~n~~vr~~AL~~l~~i---~~-----~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~ 120 (478)
..++--|-+.|..++.+=+-.+--+ .+ +||+ -+.+.+.+-|+|+|.|||-....-++++ +.|++++ .
T Consensus 60 ~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMI-Lvcna~RkDLQHPNEyiRG~TLRFLckL--kE~ELle--p 134 (948)
T KOG1058|consen 60 TIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMI-LVCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPELLE--P 134 (948)
T ss_pred HHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHH-HHHHHHhhhccCchHhhcchhhhhhhhc--CcHHHhh--h
Confidence 3344455555555555554433322 21 2322 3567899999999999999999988876 6789988 5
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHH
Q 011744 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIV 200 (478)
Q Consensus 121 ~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l 200 (478)
+.|.++.+|+.+++-||.+|+.++.+|.+.. ...+.-.+..+...+.. +.||-..-+.+-+|-. .+++.+.+.+
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDapeLi~~fL~~--e~DpsCkRNAFi~L~~---~D~ErAl~Yl 208 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAPELIESFLLT--EQDPSCKRNAFLMLFT---TDPERALNYL 208 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChHHHHHHHHHh--ccCchhHHHHHHHHHh---cCHHHHHHHH
Confidence 9999999999999999999999999998762 11222222233333322 4566555554444433 2455555666
Q ss_pred HHhhhhhcCCCh---HHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchh
Q 011744 201 ERVTPRLQHANC---AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA 276 (478)
Q Consensus 201 ~~l~~~l~~~~~---~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~ 276 (478)
........+-|+ .|..|-++-.+. .+|..-. +.++.+..+|+ +++.++|.|.-++..++. .|..++
T Consensus 209 ~~~idqi~~~~~~LqlViVE~Irkv~~-----~~p~~~~----~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk 278 (948)
T KOG1058|consen 209 LSNIDQIPSFNDSLQLVIVELIRKVCL-----ANPAEKA----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALK 278 (948)
T ss_pred HhhHhhccCccHHHHHHHHHHHHHHHh-----cCHHHhh----HHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHH
Confidence 666666665554 455555554443 2344322 45566677775 688899999888887765 566665
Q ss_pred hccc-eeeec-cCCChhHHHHHHHHHHHhc--CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 011744 277 HEIK-VFFCK-YNDPIYVKMEKLEIMIKLA--SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISV 352 (478)
Q Consensus 277 ~~~~-~~~~l-~~dd~~ir~~al~lL~~l~--~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ 352 (478)
+-.. .+.++ +..|..++...++.|+.+. ++.-.++++-.++..+..+|.++|++.+.-.-.++.. ...+.+++.
T Consensus 279 ~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss--rNvediv~~ 356 (948)
T KOG1058|consen 279 AAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS--RNVEDIVQF 356 (948)
T ss_pred HHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh--ccHHHHHHH
Confidence 5433 22222 3445678888999998875 3334455666666777889999999998776666654 333444444
Q ss_pred HHHHhcc-------cchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC-HHHHH
Q 011744 353 LLELIKI-------KVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELL 424 (478)
Q Consensus 353 ll~ll~~-------~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~-~~~~l 424 (478)
+-+=+.. .+...++..+..+..+..++|+....+|..|++++.+. ++.+-..+.-++.|-.+..++ ...++
T Consensus 357 Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~ii 435 (948)
T KOG1058|consen 357 LKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRASII 435 (948)
T ss_pred HHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 4333322 23456788899999999999999999999999999885 355555666677777776665 44566
Q ss_pred HHHhhcCC
Q 011744 425 ESFLESFP 432 (478)
Q Consensus 425 ~~l~~~~~ 432 (478)
..+.+.|.
T Consensus 436 ~~l~~~~~ 443 (948)
T KOG1058|consen 436 EKLLETFP 443 (948)
T ss_pred HHHHHhhh
Confidence 66666554
No 27
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.33 E-value=8.6e-11 Score=108.54 Aligned_cols=295 Identities=17% Similarity=0.176 Sum_probs=206.1
Q ss_pred HHHHHHHhhc-CCCChHHHHHHHHHHHHHHhhcc---cccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCc-
Q 011744 81 YLCDPLQRCL-KDDDPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI- 155 (478)
Q Consensus 81 ~l~~~i~~~l-~~~~~~VRk~A~~al~~i~~~~p---~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~- 155 (478)
.++|...+.+ .+......-.|+.++..+..-.. ..+.+.+.+|.+.++|.+.+..|+..|+.+|+.|+..++..+
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 3567777877 55677788899999999987443 234456899999999999999999999999999987653311
Q ss_pred ccccHHHHHHHHHhcccCChhhHH--HHHHHHhhccC-----CChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhh
Q 011744 156 FEITSHTLSKLLTALNECTEWGQV--FILDALSRYKA-----ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEL 228 (478)
Q Consensus 156 ~~~~~~~~~~Ll~~l~~~~~~~q~--~ll~~l~~~~~-----~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~ 228 (478)
+.+--+.+..++..+....+...+ ..-+.|+.+++ .+-......++.+..++.+.++.|+..|..++.++.+
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD- 272 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD- 272 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc-
Confidence 223335667777776655443322 34555666552 2234556788888889999999999999999999865
Q ss_pred cCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc---cchhh--ccceeee-ccCCChhHHHHHHHHH
Q 011744 229 ITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP---TILAH--EIKVFFC-KYNDPIYVKMEKLEIM 300 (478)
Q Consensus 229 ~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~---~~~~~--~~~~~~~-l~~dd~~ir~~al~lL 300 (478)
+..+.++.+.+ .+.+-|+.+|+ .+..++..||++++.++.-+. .++.+ .++.|.. +.+....||+.|...+
T Consensus 273 -g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 273 -GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred -CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence 24455655544 33445778886 577899999999999986432 12222 1333322 3444468999999999
Q ss_pred HHhc--CcccHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch--hh------HHHHHHHHHHHhcccchhHH
Q 011744 301 IKLA--SDRNIDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE--RA------AERCISVLLELIKIKVNYVV 365 (478)
Q Consensus 301 ~~l~--~~~n~~~-----Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~--~~------~~~~i~~ll~ll~~~~~~v~ 365 (478)
.+++ |.+.++. +++-|.+.+...+..+++++..+|......-. ++ .+-+++.+.++|...+..+.
T Consensus 352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkii 431 (526)
T COG5064 352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKII 431 (526)
T ss_pred cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccch
Confidence 9984 2233333 46778888889999999999999987765321 22 23457888888888777666
Q ss_pred HHHHHHHHHHHh
Q 011744 366 QEAIIVIKDIFR 377 (478)
Q Consensus 366 ~~~~~~l~~i~~ 377 (478)
+-++..+.+++.
T Consensus 432 ev~LD~~eniLk 443 (526)
T COG5064 432 EVALDAIENILK 443 (526)
T ss_pred hhhHHHHHHHHh
Confidence 666677766653
No 28
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.33 E-value=4.3e-09 Score=106.20 Aligned_cols=394 Identities=13% Similarity=0.141 Sum_probs=245.4
Q ss_pred hccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCC-Ch
Q 011744 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD-DP 95 (478)
Q Consensus 17 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~-~~ 95 (478)
++-.+++-.+-.|--.++.++... .+ --++.+++-|+.+.+|+||...-++.+.+.+.--++.+.|.++....+. ++
T Consensus 449 llided~yar~egreIisnLakaa-Gl-a~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSw 526 (1172)
T KOG0213|consen 449 LLIDEDYYARVEGREIISNLAKAA-GL-ATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSW 526 (1172)
T ss_pred ceecchHHHhhchHHHHHHHHHHh-hh-HHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccch
Confidence 344567777777766666555442 23 2357899999999999999999999998888877888999999999985 99
Q ss_pred HHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccC
Q 011744 96 YVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNEC 173 (478)
Q Consensus 96 ~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~ 173 (478)
.-|...+.+..+|.....-.+-+ ..+++.+..+|.|++..|+.-++.++..+++...+...+.+-.++..|-+.+
T Consensus 527 qaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgi--- 603 (1172)
T KOG0213|consen 527 QARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGI--- 603 (1172)
T ss_pred hhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH---
Confidence 99999999999998754221110 1467888899999999999888888888877665444433333333332211
Q ss_pred ChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHH-HhhcC
Q 011744 174 TEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLV-TLLSA 252 (478)
Q Consensus 174 ~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~ 252 (478)
++...-++....++++++.| ..++++-.-+...+...++ .+-++
T Consensus 604 ----------------------------------r~hrgk~laafLkAigylip-lmd~eya~yyTrevmlil~rEf~sP 648 (1172)
T KOG0213|consen 604 ----------------------------------RQHRGKELAAFLKAIGYLIP-LMDAEYASYYTREVMLILIREFGSP 648 (1172)
T ss_pred ----------------------------------HHccChHHHHHHHHHhhccc-cccHHHHHHhHHHHHHHHHHhhCCC
Confidence 11111111222333333322 1233322212122222222 34457
Q ss_pred ChhHHHHHHHHHHHHHhhC---ccchhhc-ccee----eecc--CCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhh
Q 011744 253 EPEIQYVALRNINLIVQRR---PTILAHE-IKVF----FCKY--NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATE 322 (478)
Q Consensus 253 ~~~ir~~aL~~l~~l~~~~---~~~~~~~-~~~~----~~l~--~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~ 322 (478)
|.+.+..+|..+.+++... |..+... ++.| +... .|-..- +...++-..+|++--...+|..+..-+++
T Consensus 649 DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~y-kqlv~ttv~ia~KvG~~~~v~R~v~~lkd 727 (1172)
T KOG0213|consen 649 DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNY-KQLVDTTVEIAAKVGSDPIVSRVVLDLKD 727 (1172)
T ss_pred hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccch-hhHHHHHHHHHHHhCchHHHHHHhhhhcc
Confidence 8899999999999998764 3333222 2222 2111 111111 12334555555555555666666666678
Q ss_pred cCHHHHHHHHHHHHHHHhcch------hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCc----chHHHHHHHHh
Q 011744 323 VDVDFVRKAVRAIGRCAIKLE------RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN----TYESIIATLCE 392 (478)
Q Consensus 323 ~d~~~r~~~v~~i~~l~~~~~------~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~----~~~~~i~~L~~ 392 (478)
.++.+|+..+..+.++....+ .-.+.++|-++.-+........ -+...++.+...... ....++..+..
T Consensus 728 e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~ 806 (1172)
T KOG0213|consen 728 EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILW 806 (1172)
T ss_pred ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHH
Confidence 899999988888877776653 3456888988888877554332 233444444433221 22345666655
Q ss_pred hcCCCChhhHHHHHHHHhhcccCccCCH--HHHH----HHHhhcCCCCCHHHHHHHHHHHHHHhccC
Q 011744 393 SLDTLDEPEAKASMIWIIGEYAERIDNA--DELL----ESFLESFPEEPAQVQLQLLTATVKLFLKK 453 (478)
Q Consensus 393 ~l~~~~~~~~~~~~~~ilGE~~~~~~~~--~~~l----~~l~~~~~~~~~~vk~~il~a~~Kl~~~~ 453 (478)
.|.. ..+.+++.++-.+|..+...+.+ ...+ ..+++.+..++++|-..||.|+.-++...
T Consensus 807 rLnn-ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 807 RLNN-KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred HhcC-CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 5654 35778888888887776555543 2233 33688889999999999999998887643
No 29
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=5.4e-10 Score=111.01 Aligned_cols=297 Identities=18% Similarity=0.178 Sum_probs=215.5
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhccc--CchHHHH----HHHHHHhhcC-CCCHHHHHHHHHHhcCCCh--hhhhH-
Q 011744 11 FTDVVNCMQTENLELKKLVYLYLINYAKS--QPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIRV--DKITE- 80 (478)
Q Consensus 11 ~~~ii~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l----~in~l~kdL~-~~n~~vr~~AL~~l~~i~~--~e~~~- 80 (478)
....+..+.|.+...+.-+--.+..+... +|.+... +++.+.+-+. +.+|.++-.|..+|.+|.+ .+-.+
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 34556667777777766555555555433 2333222 4566777775 6678999888888888853 33322
Q ss_pred ----HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCCh-hhHHHHHHHHHHHhhhC-
Q 011744 81 ----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-MVVANAVAALAEIEENS- 151 (478)
Q Consensus 81 ----~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~~~-~V~~~a~~~l~~i~~~~- 151 (478)
..+|.+..++.+++..||..|+.|++++...+|+ .+-+.+.++.|..++...++ ...+++..+|..++...
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 2467789999999999999999999999987764 34455778888888877665 56778899999998876
Q ss_pred CCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH-----HHHHHhhhhhcCCChHHHHHHHHHHHHhh
Q 011744 152 SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQM 226 (478)
Q Consensus 152 ~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~~~ 226 (478)
|++-++...++++-|...+...|+-...-..+.++.+.....+..+ .++..+..+|.+.+..|+..|.++++++.
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 6666777778888888888888998888788888776644333332 24667888999999999999999999875
Q ss_pred hhcCChHHHHHHHH-HhhhHHHHhhc-C-ChhHHHHHHHHHHHHHhhCccchhhc-----cce-eeeccCCChhHHHHHH
Q 011744 227 ELITSTDVVRNLCK-KMAPPLVTLLS-A-EPEIQYVALRNINLIVQRRPTILAHE-----IKV-FFCKYNDPIYVKMEKL 297 (478)
Q Consensus 227 ~~~~~~~~~~~~~~-~~~~~l~~ll~-~-~~~ir~~aL~~l~~l~~~~~~~~~~~-----~~~-~~~l~~dd~~ir~~al 297 (478)
.++.+-.+.++. ...+.|..+++ + ...+|..|..+++.|+.-+++-++.- ++. +.++...+..+|++|.
T Consensus 308 --tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 308 --TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred --eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 245555555444 56677777886 3 34599999999999998776433322 232 2345667789999999
Q ss_pred HHHHHhcCcccH
Q 011744 298 EIMIKLASDRNI 309 (478)
Q Consensus 298 ~lL~~l~~~~n~ 309 (478)
..+.+++...+-
T Consensus 386 waIsN~ts~g~~ 397 (514)
T KOG0166|consen 386 WAISNLTSSGTP 397 (514)
T ss_pred HHHHhhcccCCH
Confidence 999999877773
No 30
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5e-08 Score=99.44 Aligned_cols=397 Identities=14% Similarity=0.169 Sum_probs=265.5
Q ss_pred HHHhhcCCCCHHHHHHHHHHhc-CCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHh
Q 011744 50 TFVKDSQDPNPLIRALAVRTMG-CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL 128 (478)
Q Consensus 50 ~l~kdL~~~n~~vr~~AL~~l~-~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~l 128 (478)
-|..-|+|++..-+.-|++.+- -|...+-+..+.|+|.+...++|+-|||-...-+.+.....|++.-- =+..+++.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~ 116 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKA 116 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhh
Confidence 3445678888888888888554 44444557889999999999999999999999999999999987542 25889999
Q ss_pred hcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHH-hcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhh
Q 011744 129 ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT-ALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (478)
Q Consensus 129 L~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~-~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l 207 (478)
|.|+|+-+|..|+.+|..|.-. .+.|++-.-++ ...|++|+..-..-..+.++-.-++++..++++.+..+|
T Consensus 117 L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LL 189 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLL 189 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHh
Confidence 9999999999999999887432 22333322222 234778888665555555443344455557888888899
Q ss_pred cCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhcC-ChhHHHHHHHHHHHHHhhC---ccc---------
Q 011744 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRR---PTI--------- 274 (478)
Q Consensus 208 ~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~ir~~aL~~l~~l~~~~---~~~--------- 274 (478)
.+.++-|+=.|+-++-.+. |+-++-+ -+--..+++++-. |.=-+.+.+..|.+.+..+ |..
T Consensus 190 aD~splVvgsAv~AF~evC-----PerldLI-HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~ 263 (968)
T KOG1060|consen 190 ADRSPLVVGSAVMAFEEVC-----PERLDLI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG 263 (968)
T ss_pred cCCCCcchhHHHHHHHHhc-----hhHHHHh-hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc
Confidence 9999999988888887764 3433321 1112334555543 3333566677777776542 311
Q ss_pred --------h----hh-----ccc----eee-eccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHH
Q 011744 275 --------L----AH-----EIK----VFF-CKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAV 332 (478)
Q Consensus 275 --------~----~~-----~~~----~~~-~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v 332 (478)
. .| ..+ ... ++.+..+++-..+.++.+.++-.+.+..|++-|...+++ +.+.+.-.+
T Consensus 264 ~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~~~vqyvvL 342 (968)
T KOG1060|consen 264 RSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-NREVQYVVL 342 (968)
T ss_pred ccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-CCcchhhhH
Confidence 0 11 111 111 234566788889999999999888888899988886664 557788888
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhh
Q 011744 333 RAIGRCAIKLERAAERCISVLLELIKIKVNY-VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIG 411 (478)
Q Consensus 333 ~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~-v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilG 411 (478)
+.|..++.+-+.-++.+++...- ...+++ +.--=++.+..++. ..-...++..+-.|+.+- +.++...++-.||
T Consensus 343 ~nIa~~s~~~~~lF~P~lKsFfv--~ssDp~~vk~lKleiLs~La~--esni~~ILrE~q~YI~s~-d~~faa~aV~AiG 417 (968)
T KOG1060|consen 343 QNIATISIKRPTLFEPHLKSFFV--RSSDPTQVKILKLEILSNLAN--ESNISEILRELQTYIKSS-DRSFAAAAVKAIG 417 (968)
T ss_pred HHHHHHHhcchhhhhhhhhceEe--ecCCHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 89988888755444444443321 122222 22222344444442 222344566666666543 3357778889999
Q ss_pred cccCccCC-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHH
Q 011744 412 EYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLKY 468 (478)
Q Consensus 412 E~~~~~~~-~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~~ 468 (478)
..+..+.. +..++..++.-+..++..|-......+=++..+.|.+ -.+++.++..+
T Consensus 418 rCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~-h~~ii~~La~l 474 (968)
T KOG1060|consen 418 RCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE-HLEILFQLARL 474 (968)
T ss_pred HHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH-HHHHHHHHHHH
Confidence 99988755 7788888888888889999999999999998888886 33455554443
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.12 E-value=3.3e-07 Score=94.64 Aligned_cols=380 Identities=14% Similarity=0.178 Sum_probs=221.9
Q ss_pred HHhhcCCCCHHHHHHHHHHhcC----CChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc---ccccccHHH
Q 011744 51 FVKDSQDPNPLIRALAVRTMGC----IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLE 123 (478)
Q Consensus 51 l~kdL~~~n~~vr~~AL~~l~~----i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~ 123 (478)
+...+++.|+.....+...|.. ....+..+...+.+..+|.|+++.||.-|+.++.++.+.... .+.+.++.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 5566666665555555544443 334566888899999999999999999999999998765432 233457889
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHhhhCCCCccccc-HHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH-----
Q 011744 124 SLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT-SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE----- 197 (478)
Q Consensus 124 ~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~-~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~----- 197 (478)
.+..++.|+|..|...|+.++..+...... .-.++ .+....|-+.+..+++-.+++++.++......+++...
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~s 201 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNS 201 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 999999999999999999999999876432 11111 11233343334455778888899998888766554332
Q ss_pred HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc---CCh---hHHHHHH-HHHHHHHh
Q 011744 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS---AEP---EIQYVAL-RNINLIVQ 269 (478)
Q Consensus 198 ~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~---~~~---~ir~~aL-~~l~~l~~ 269 (478)
.+++.+...+.+.|.-|...|+.++..++. .++..+-+.+ .+.+.|..++. .|| .+...+. ..+..++.
T Consensus 202 gll~~ll~eL~~dDiLvqlnalell~~La~---~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 202 GLLDLLLKELDSDDILVQLNALELLSELAE---TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred cHHHHHHHHhcCccHHHHHHHHHHHHHHHc---ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 266777777888888999999999998753 3343333323 45666666663 244 2222222 45555665
Q ss_pred hCccchhhc----cce-eeeccCCChhHHHHHHHHHHHhcCcccHHH------------HHHHHHHhhhhcCHHHHHHHH
Q 011744 270 RRPTILAHE----IKV-FFCKYNDPIYVKMEKLEIMIKLASDRNIDQ------------VLLEFKEYATEVDVDFVRKAV 332 (478)
Q Consensus 270 ~~~~~~~~~----~~~-~~~l~~dd~~ir~~al~lL~~l~~~~n~~~------------Iv~~L~~~l~~~d~~~r~~~v 332 (478)
..|..+... +.. |....+.|...+..|++.+..+|....-.. ++.....+.+....++|..++
T Consensus 279 ~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l 358 (503)
T PF10508_consen 279 VSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRAL 358 (503)
T ss_pred cChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 455433222 222 223456778999999999999885433322 233333444455566776666
Q ss_pred HHHHHHHhcchh-hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhh-CCcchHHHHHHHHhhcCCCChhhHHHHHHHHh
Q 011744 333 RAIGRCAIKLER-AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR-YPNTYESIIATLCESLDTLDEPEAKASMIWII 410 (478)
Q Consensus 333 ~~i~~l~~~~~~-~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~-~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~il 410 (478)
.+++.+-...+. ..+.+....-.++..-++.-... .+..++++ +||.|-.+...+.... .--|.+
T Consensus 359 ~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~----------~~~Wg~ 425 (503)
T PF10508_consen 359 HALASILTSGTDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALA----------AQPWGQ 425 (503)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHh----------cCHHHH
Confidence 666665332211 12222222222222211111010 22222222 3444332222221110 012666
Q ss_pred hcccCccCCHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHhc
Q 011744 411 GEYAERIDNADELLESFLESFPEE---PAQVQLQLLTATVKLFL 451 (478)
Q Consensus 411 GE~~~~~~~~~~~l~~l~~~~~~~---~~~vk~~il~a~~Kl~~ 451 (478)
-++.. .+.+++.++++-.+. ..+-|..++.++.|...
T Consensus 426 ~~i~~----~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 426 REICS----SPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHHh----CccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 65543 345778887766544 45667778888886654
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.05 E-value=1.9e-07 Score=96.39 Aligned_cols=319 Identities=14% Similarity=0.129 Sum_probs=205.6
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHH-----HHHHHhhcCCCCHHHHHHHHHHhcCCC-hhhhhHHH-
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA-----VNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYL- 82 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~-----in~l~kdL~~~n~~vr~~AL~~l~~i~-~~e~~~~l- 82 (478)
....+...+.+++..+|+++.-.+..+.+++.....++ ...+...+.++|..+...|.++|.++. .+...+.+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHh
Confidence 34566668999999999999888888887765533332 346778889999999999999999985 34444455
Q ss_pred ----HHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccc---cccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCc
Q 011744 83 ----CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (478)
Q Consensus 83 ----~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~ 155 (478)
.+.+.+++..+++.+|.++..++.++.+.+|+... +.++.+.+...+.++|.-|+.+|+..+.+++.......
T Consensus 158 ~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~ 237 (503)
T PF10508_consen 158 DSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQ 237 (503)
T ss_pred CcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHH
Confidence 77788888888999999999999999998887643 34688999999999999999999999999988432211
Q ss_pred ccccHHHHHHHHHhccc--CCh-hhHHH---HHHHHhhccCCChHHH----HHHHHHhhhhhcCCChHHHHHHHHHHHHh
Q 011744 156 FEITSHTLSKLLTALNE--CTE-WGQVF---ILDALSRYKAADAREA----ENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (478)
Q Consensus 156 ~~~~~~~~~~Ll~~l~~--~~~-~~q~~---ll~~l~~~~~~~~~~~----~~~l~~l~~~l~~~~~~V~~ea~~~i~~~ 225 (478)
+-.-.++++++++.+.+ .+| +..+. .+++++......+... ..+++.+..++.+.++..+--|+.+++.+
T Consensus 238 yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i 317 (503)
T PF10508_consen 238 YLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQI 317 (503)
T ss_pred HHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 11223577777777753 456 44333 3455555443222222 34666667777888887777777777765
Q ss_pred hhhcCChHHHHHH-------HHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHH
Q 011744 226 MELITSTDVVRNL-------CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKL 297 (478)
Q Consensus 226 ~~~~~~~~~~~~~-------~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al 297 (478)
.. +.+....+ ++.+...+..... ...++|-.+++++..+....++- ++..+- ...
T Consensus 318 gs---t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~-------------~~~~i~-~~~ 380 (503)
T PF10508_consen 318 GS---TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDR-------------QDNDIL-SIT 380 (503)
T ss_pred hC---CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCC-------------chHHHH-HHH
Confidence 31 23322222 1222333333333 45688999999999886532210 011111 223
Q ss_pred HHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 011744 298 EIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVL 353 (478)
Q Consensus 298 ~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~l 353 (478)
+.+|....++.... -+..+++.+=+|+|..+.+-+..++.. .|.+..+
T Consensus 381 ~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~~-----~Wg~~~i 428 (503)
T PF10508_consen 381 ESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAAQ-----PWGQREI 428 (503)
T ss_pred HHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhcC-----HHHHHHH
Confidence 33444333333222 344555666677877777777666644 3555543
No 33
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=8.3e-07 Score=89.99 Aligned_cols=372 Identities=14% Similarity=0.110 Sum_probs=235.4
Q ss_pred CCchhhHHHHHH-hccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHH
Q 011744 5 KDVSSLFTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEY 81 (478)
Q Consensus 5 ~d~~~~~~~ii~-l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~~ 81 (478)
.|+.-+.+..++ -+.|+|-..--++.-.++.+ .+|+++.-..+-+..-|+|.-|++|.-|+-.+-.+. -||....
T Consensus 104 tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~f--vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~ 181 (877)
T KOG1059|consen 104 TDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCI--VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP 181 (877)
T ss_pred ccHHHHHHHHHHHHhccCccchhhheecccccc--cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh
Confidence 344444443333 34455555555555555544 346788888888889999999999999999998874 6899999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC-CChhhHHHHHHHHHHHhhhCCCCcccccH
Q 011744 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITS 160 (478)
Q Consensus 82 l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d-~~~~V~~~a~~~l~~i~~~~~~~~~~~~~ 160 (478)
.+|.++.-|.|++|.|..+|+..++.+.+++|.-.- .+.|.+.+++.+ .|.=+..-.+.+++.+.+-.|.-. .
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg----K 255 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG----K 255 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh----h
Confidence 999999999999999999999999999999997655 477888887754 444455555666665544332111 1
Q ss_pred HHHHHHHHhcccCChhhH-HHHHHHHhhc-----cCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHH
Q 011744 161 HTLSKLLTALNECTEWGQ-VFILDALSRY-----KAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV 234 (478)
Q Consensus 161 ~~~~~Ll~~l~~~~~~~q-~~ll~~l~~~-----~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~ 234 (478)
+.+..+++.+.....-.- ...++.+..- .+.....+.-.++.+..++.++++...|=+..++..+.+ .+|..
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~ 333 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKA 333 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHH
Confidence 233334433322111000 0011111111 123344455677788888889999999988888888765 36666
Q ss_pred HHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc--cchhhccceeeeccCCChhHHHHHHHHHHHhcCcccHHH
Q 011744 235 VRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQ 311 (478)
Q Consensus 235 ~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~--~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~ 311 (478)
++.- -..+++.|+ .|+++|.-||..+..++.... ++++..+..+ ...++...|-.-+.-+..+|..+|...
T Consensus 334 Vqa~----kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~--~~ae~t~yrdell~~II~iCS~snY~~ 407 (877)
T KOG1059|consen 334 VQAH----KDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHV--EKAEGTNYRDELLTRIISICSQSNYQY 407 (877)
T ss_pred HHHh----HHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHhhhhhhhh
Confidence 6532 233457776 799999999999999987632 3333322222 134556788888998999999999887
Q ss_pred HHHH------HHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhccc----ch-------hHHHHHHHHHHH
Q 011744 312 VLLE------FKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK----VN-------YVVQEAIIVIKD 374 (478)
Q Consensus 312 Iv~~------L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~----~~-------~v~~~~~~~l~~ 374 (478)
|.+. |.+..+-+..+-...+..-+..++.+.+..-...++.+..++.++ +. .|-.+++..+++
T Consensus 408 ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GE 487 (877)
T KOG1059|consen 408 ITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGE 487 (877)
T ss_pred hhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHH
Confidence 7552 222233333344455556666777777666666777777777743 11 233455555555
Q ss_pred HHhhCCcchHHHHHHHHhh
Q 011744 375 IFRRYPNTYESIIATLCES 393 (478)
Q Consensus 375 i~~~~~~~~~~~i~~L~~~ 393 (478)
.... -+-...+++.+.+.
T Consensus 488 yse~-ven~~~~leamlrp 505 (877)
T KOG1059|consen 488 YSEF-VENPNDTLEAMLRP 505 (877)
T ss_pred HHHH-hhCHHHHHHHHhcC
Confidence 5432 12223456666543
No 34
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.83 E-value=1.6e-07 Score=83.29 Aligned_cols=114 Identities=28% Similarity=0.475 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHhcC--CChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhh
Q 011744 59 NPLIRALAVRTMGC--IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (478)
Q Consensus 59 n~~vr~~AL~~l~~--i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V 136 (478)
||.+|+.|+.++|. ++-|.+++...|.+.++|.|++|.||+.|+.++.++...+.-.+.+ .+...+..++.|+|+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~-~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG-QLFSRILKLLVDENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh-hhhHHHHHHHcCCCHHH
Confidence 68999999999995 4678999999999999999999999999999999998876655543 44466667889999999
Q ss_pred HHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChh
Q 011744 137 VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEW 176 (478)
Q Consensus 137 ~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 176 (478)
+..|...+.++.....+ ..+.+.+..++..++.+..|
T Consensus 80 r~~A~~~~~e~~~~~~~---~~i~~~~~e~i~~l~~~~~~ 116 (178)
T PF12717_consen 80 RSLARSFFSELLKKRNP---NIIYNNFPELISSLNNCYEH 116 (178)
T ss_pred HHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHhCcccc
Confidence 99999999999877322 22345666666666665444
No 35
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.82 E-value=2.2e-07 Score=92.44 Aligned_cols=364 Identities=15% Similarity=0.161 Sum_probs=207.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHhhcccc-cc-cccHHH
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAEL-VE-DRGFLE 123 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~-~~~VRk~A~~al~~i~~~~p~~-~~-~~~~~~ 123 (478)
++.+++-|+.|.+|+||.-.-++.+.+.+.--++.+.|.+..+..+. ++.-|...+.++.+|.....-. .. -.++++
T Consensus 282 ~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ 361 (975)
T COG5181 282 SVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLK 361 (975)
T ss_pred eeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHH
Confidence 35678999999999999999999998887777888899999998884 8999999999999998754211 11 125778
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHh
Q 011744 124 SLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERV 203 (478)
Q Consensus 124 ~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l 203 (478)
.+.+++.|++..|+.-++.++..+++...+...+.+..++..|-+... .. ...+...+++.+
T Consensus 362 ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~---------------~h---rgk~l~sfLkA~ 423 (975)
T COG5181 362 CISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGAS---------------QH---RGKELVSFLKAM 423 (975)
T ss_pred HHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHH---------------hc---CCchHHHHHHHh
Confidence 888999999999998888888888877655444443333333322110 00 011111122221
Q ss_pred hhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhh---Cccchhhcc
Q 011744 204 TPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQR---RPTILAHEI 279 (478)
Q Consensus 204 ~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~---~~~~~~~~~ 279 (478)
+.+.| +-+|++.-.........+.+.++ ++.+.+...+......... .|..+...+
T Consensus 424 -------------------g~iip-lm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v 483 (975)
T COG5181 424 -------------------GFIIP-LMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQV 483 (975)
T ss_pred -------------------ccccc-cCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhh
Confidence 11111 01222211111122223333332 3444444433333333322 233333222
Q ss_pred c-eeee----c--cCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch------hhH
Q 011744 280 K-VFFC----K--YNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE------RAA 346 (478)
Q Consensus 280 ~-~~~~----l--~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~------~~~ 346 (478)
. .||. . -.|-.+-|.- ...-.-++..-....++..+++|.+|+.+.+|...+....++..+.+ ...
T Consensus 484 ~pefF~~fw~rr~A~dr~~~k~v-~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErle 562 (975)
T COG5181 484 SPEFFSPFWRRRSAGDRRSYKQV-VLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLE 562 (975)
T ss_pred cHHhhchHHHhhhccccccccee-ehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHH
Confidence 2 2221 0 0111121111 12222233333446788888999999998899877777666655542 345
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHh-----hCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCCHH
Q 011744 347 ERCISVLLELIKIKVNYVVQEAIIVIKDIFR-----RYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNAD 421 (478)
Q Consensus 347 ~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~-----~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~~~ 421 (478)
+.++|.++.-+...+..+.- +...+..++. ..| .-..++..+...|..- .|.++..++-..|-....++++.
T Consensus 563 erl~d~il~Afqeq~~t~~~-il~~f~tv~vsl~~r~kp-~l~~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~ 639 (975)
T COG5181 563 ERLYDSILNAFQEQDTTVGL-ILPCFSTVLVSLEFRGKP-HLSMIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACG 639 (975)
T ss_pred HHHHHHHHHHHHhccccccE-EEecccceeeehhhccCc-chHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcc
Confidence 67888888888775432210 1111111111 111 1234677777777653 57777777666665554444321
Q ss_pred ------HHHHHHhhcCCCCCHHHHHHHHHHHHHHhcc
Q 011744 422 ------ELLESFLESFPEEPAQVQLQLLTATVKLFLK 452 (478)
Q Consensus 422 ------~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~ 452 (478)
++=..+++++..++++|-..||.|+.-++..
T Consensus 640 e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 640 ETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred hHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhh
Confidence 2223478889999999999999999988764
No 36
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.1e-05 Score=82.51 Aligned_cols=363 Identities=14% Similarity=0.184 Sum_probs=209.4
Q ss_pred HHHHHHHhhcCC-------CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCC
Q 011744 81 YLCDPLQRCLKD-------DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (478)
Q Consensus 81 ~l~~~i~~~l~~-------~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~ 153 (478)
.+.|.+.++|.. .++.+-|+|..|+.-..+-..+.+-+ ...+.+.+-+..+|-.-+.+|+.+++.+.....+
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 566667776642 55688899999988777665554443 5668888888889988899999999988765432
Q ss_pred C-cccccHHHHHHHHHhcccCChhh-------HHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHh
Q 011744 154 P-IFEITSHTLSKLLTALNECTEWG-------QVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (478)
Q Consensus 154 ~-~~~~~~~~~~~Ll~~l~~~~~~~-------q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~ 225 (478)
. .....+..++.+++...+++-|. --++.+.+..... +.......+..+..-+ +..|.|.-.+.+++..+
T Consensus 398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~-n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~L 475 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII-NQELLQSKLSALLEGL-NDEPRVASNVCWAFISL 475 (859)
T ss_pred hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc-cHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHH
Confidence 2 23344455666666665554443 3334443332111 1111122233333222 45678888888888877
Q ss_pred hhhc----CCh---HHHHHHHHHhhhHHHHhhc----CChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHH
Q 011744 226 MELI----TST---DVVRNLCKKMAPPLVTLLS----AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKM 294 (478)
Q Consensus 226 ~~~~----~~~---~~~~~~~~~~~~~l~~ll~----~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~ 294 (478)
.+.. .++ +........+++.|+.--. .+.|.|.+|.++|..++...|+.+.+ .+.+
T Consensus 476 aea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~-------------~v~~ 542 (859)
T KOG1241|consen 476 AEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP-------------MVQK 542 (859)
T ss_pred HHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH-------------HHHH
Confidence 6321 011 0001112234554444332 35799999999999999977755433 2222
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHhcch----hhHHHHHHHHHHHhcccch-hHHHHH
Q 011744 295 EKLEIMIKLASDRNIDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVN-YVVQEA 368 (478)
Q Consensus 295 ~al~lL~~l~~~~n~~~Iv~~L~~~l~-~~d~~~r~~~v~~i~~l~~~~~----~~~~~~i~~ll~ll~~~~~-~v~~~~ 368 (478)
..+-++.+|.+. +. .+.+.+-. +.-.++...+...|..+..+++ +..+.+...+++++..+++ .+.+++
T Consensus 543 ~~l~il~kl~q~--i~---~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a 617 (859)
T KOG1241|consen 543 LTLVILEKLDQT--IS---SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEA 617 (859)
T ss_pred HHHHHHHHHHHH--HH---HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHH
Confidence 233333332110 00 11221111 1113455555566665555554 4455556666666777443 466777
Q ss_pred HHHHHHHHhhCCcch----HHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccC-----CHHHHHHHHhhcCCC--CCHH
Q 011744 369 IIVIKDIFRRYPNTY----ESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-----NADELLESFLESFPE--EPAQ 437 (478)
Q Consensus 369 ~~~l~~i~~~~~~~~----~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~-----~~~~~l~~l~~~~~~--~~~~ 437 (478)
...+..++..-.... +.....|..-|+...+..+..+++=++|..++... .+.++...+++.+.. -...
T Consensus 618 ~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~ 697 (859)
T KOG1241|consen 618 FLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRN 697 (859)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcccccc
Confidence 777777665433222 33445555556666667777788888888776543 366788888888764 3578
Q ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHH
Q 011744 438 VQLQLLTATVKLFLKKPTEGPQQMIQVT 465 (478)
Q Consensus 438 vk~~il~a~~Kl~~~~~~~~~~~~~~~~ 465 (478)
||=.||++++-++.....+ .++.+..+
T Consensus 698 vKP~IlS~FgDIAlaIg~~-F~~Yl~~v 724 (859)
T KOG1241|consen 698 VKPAILSVFGDIALAIGAD-FEPYLEMV 724 (859)
T ss_pred ccchHHHHHHHHHHHHHHh-HHHHHHHH
Confidence 8999999999888766543 44444433
No 37
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.77 E-value=4.2e-06 Score=82.94 Aligned_cols=290 Identities=12% Similarity=0.176 Sum_probs=191.3
Q ss_pred HHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC-CCCcccccHHHHHHHHHhcccCChhhHHHHHHHHh
Q 011744 108 LYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALS 186 (478)
Q Consensus 108 i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~-~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~ 186 (478)
+...+|+... .+.|.|...++|+-.+|..-++.+++.+...+ +++..+.....++.+++.-.....|.-+++|.-|.
T Consensus 254 ll~~n~q~~~--q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~la 331 (898)
T COG5240 254 LLKENSQALL--QLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLA 331 (898)
T ss_pred HHHhChHHHH--HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3445666554 57788888898988999999999998887776 44444444444555544211122344444444444
Q ss_pred hccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhcC-ChhHHHHHHHHHH
Q 011744 187 RYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNIN 265 (478)
Q Consensus 187 ~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~ir~~aL~~l~ 265 (478)
+-.|+.-.. .-..+..++++.|..+..-|+.+++. .+..+.+. ++++.+..+.++ ..+.+.++.+++.
T Consensus 332 m~~P~kv~v---cN~evEsLIsd~Nr~IstyAITtLLK----TGt~e~id----rLv~~I~sfvhD~SD~FKiI~ida~r 400 (898)
T COG5240 332 MKYPQKVSV---CNKEVESLISDENRTISTYAITTLLK----TGTEETID----RLVNLIPSFVHDMSDGFKIIAIDALR 400 (898)
T ss_pred hhCCceeee---cChhHHHHhhcccccchHHHHHHHHH----cCchhhHH----HHHHHHHHHHHhhccCceEEeHHHHH
Confidence 433331111 11223346677888888888888887 35656654 455555666663 5678888999999
Q ss_pred HHHhhCccchhhcccee-eec-cCCChhHHHHHHHHHHHhc--CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhc
Q 011744 266 LIVQRRPTILAHEIKVF-FCK-YNDPIYVKMEKLEIMIKLA--SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (478)
Q Consensus 266 ~l~~~~~~~~~~~~~~~-~~l-~~dd~~ir~~al~lL~~l~--~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~ 341 (478)
.++-..|.--..++.-+ ..+ .......|+-+.+.+..+. .++.-+..++.|-.|+.|+. +-.-+++-++.+++.
T Consensus 401 sLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDce--y~~I~vrIL~iLG~E 478 (898)
T COG5240 401 SLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCE--YHQITVRILGILGRE 478 (898)
T ss_pred HHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcc--hhHHHHHHHHHhccc
Confidence 98887775322222211 112 2334788999999998876 45677889999999998874 556677778888887
Q ss_pred ch--hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhh--CCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcc
Q 011744 342 LE--RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR--YPNTYESIIATLCESLDTLDEPEAKASMIWIIGEY 413 (478)
Q Consensus 342 ~~--~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~--~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~ 413 (478)
-| +....|+.-+.+-+-..+..|+..++..+.++.-+ ++-.++.+...|-.++.| .|++++..+.+.+.-.
T Consensus 479 gP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD-~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 479 GPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLND-QDDEVRDRASFLLRNM 553 (898)
T ss_pred CCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhc-ccHHHHHHHHHHHHhh
Confidence 65 45678999999988889999999999999887533 333455555555566766 4778888777776443
No 38
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=8.2e-06 Score=84.03 Aligned_cols=315 Identities=17% Similarity=0.200 Sum_probs=190.6
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHH
Q 011744 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKL 166 (478)
Q Consensus 87 ~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L 166 (478)
.++..+++-.-+|...+|+.=+..-..|..- =+...+.+=|+.++..|+.-|+.+++.|+... ...-..|.+.++
T Consensus 76 lKLias~~f~dKRiGYLaamLlLdE~qdvll--LltNslknDL~s~nq~vVglAL~alg~i~s~E---mardlapeVe~L 150 (866)
T KOG1062|consen 76 LKLIASDNFLDKRIGYLAAMLLLDERQDLLL--LLTNSLKNDLNSSNQYVVGLALCALGNICSPE---MARDLAPEVERL 150 (866)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccchHHHH--HHHHHHHhhccCCCeeehHHHHHHhhccCCHH---HhHHhhHHHHHH
Confidence 4445555555555555555433333333222 13355555566777778888888887775432 111112334444
Q ss_pred HHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHH
Q 011744 167 LTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPL 246 (478)
Q Consensus 167 l~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l 246 (478)
++ ..+|+..-+..-...++-++.++..+.+++....+|.+.++.|...++..+..+.. .+++.+..+ +.+.+.+
T Consensus 151 l~---~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~--~~~~~l~~f-r~l~~~l 224 (866)
T KOG1062|consen 151 LQ---HRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCK--ISPDALSYF-RDLVPSL 224 (866)
T ss_pred Hh---CCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHh--cCHHHHHHH-HHHHHHH
Confidence 44 46777777765555555555666677788888888888889998888888777653 244444433 3344444
Q ss_pred HHhh----c------------CChhHHHHHHHHHHHHHhhCccchhhcccee---e----eccCCChhHHHHHHHHHHHh
Q 011744 247 VTLL----S------------AEPEIQYVALRNINLIVQRRPTILAHEIKVF---F----CKYNDPIYVKMEKLEIMIKL 303 (478)
Q Consensus 247 ~~ll----~------------~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~---~----~l~~dd~~ir~~al~lL~~l 303 (478)
+..| + ++|-++.-.|+.|.-+.+.+++.-...-.++ . .-++-...|=-++...++.+
T Consensus 225 V~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I 304 (866)
T KOG1062|consen 225 VKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI 304 (866)
T ss_pred HHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc
Confidence 4332 1 2355777788888888877664322111110 0 00111123444444455544
Q ss_pred cCcccHHH-HHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcc
Q 011744 304 ASDRNIDQ-VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT 382 (478)
Q Consensus 304 ~~~~n~~~-Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~ 382 (478)
-.+..... -++-|-.|+...|..+|.-+++.+.+....-+...+..-.+++++|++.+..++..+.+..-.++.. .-
T Consensus 305 ~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~--~N 382 (866)
T KOG1062|consen 305 RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE--SN 382 (866)
T ss_pred cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc--cc
Confidence 33332222 2444556777777778888888888888777777889999999999999999999999888777643 33
Q ss_pred hHHHHHHHHhhcCCCChhhHHHHHHHHhhcccC
Q 011744 383 YESIIATLCESLDTLDEPEAKASMIWIIGEYAE 415 (478)
Q Consensus 383 ~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~ 415 (478)
.+..++.|+++|+.+ +++.+..++.-+-|-++
T Consensus 383 v~~mv~eLl~fL~~~-d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 383 VRVMVKELLEFLESS-DEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence 456788999999876 67777666544444333
No 39
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.71 E-value=2.2e-07 Score=86.31 Aligned_cols=221 Identities=19% Similarity=0.177 Sum_probs=163.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCC-hhhhhHH------HHHHHHhhcCCCCh--HHHHHHHHHHHHHHh-hcccc-
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEY------LCDPLQRCLKDDDP--YVRKTAAICVAKLYD-INAEL- 115 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i~-~~e~~~~------l~~~i~~~l~~~~~--~VRk~A~~al~~i~~-~~p~~- 115 (478)
+++-+..-|.+++..||..|..+||+|. +.+.++. .+.++..++.++.+ ..-+.|...+..+.+ ++|.-
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~ 237 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD 237 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence 3556678888999999999999999996 4455543 34667777777555 556889999999988 55521
Q ss_pred -cccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcc--cccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCC
Q 011744 116 -VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF--EITSHTLSKLLTALNECTEWGQVFILDALSRYKAAD 192 (478)
Q Consensus 116 -~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~--~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~ 192 (478)
-.-...+|.|.+++...|+.|..-|+.++..+..... +.. .+..+...+|++.|..++.-.|.-++|..+.....+
T Consensus 238 w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~-E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 238 WSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN-EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH-HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence 0012467889999999999999999999999875431 111 122345567888777777677777899999887554
Q ss_pred hHHHHH-----HHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHH
Q 011744 193 AREAEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNIN 265 (478)
Q Consensus 193 ~~~~~~-----~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~ 265 (478)
+...+- .++.+..+|++.-..++-||+.++.++.. ++.+-++.+++ +++|+|+.+++ .+--+|..|..+++
T Consensus 317 D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k~kKEACWAis 394 (526)
T COG5064 317 DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAIS 394 (526)
T ss_pred ccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222 45667778888888999999999988752 56666666666 78999999997 58889999999999
Q ss_pred HHHhh
Q 011744 266 LIVQR 270 (478)
Q Consensus 266 ~l~~~ 270 (478)
.....
T Consensus 395 Natsg 399 (526)
T COG5064 395 NATSG 399 (526)
T ss_pred hhhcc
Confidence 98764
No 40
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=7.5e-06 Score=82.51 Aligned_cols=340 Identities=15% Similarity=0.120 Sum_probs=188.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHH-HHHHHHhh-cCCCChHHHHHHHHHHHHHHhhcccccc--c
Q 011744 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEY-LCDPLQRC-LKDDDPYVRKTAAICVAKLYDINAELVE--D 118 (478)
Q Consensus 43 ~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~-l~~~i~~~-l~~~~~~VRk~A~~al~~i~~~~p~~~~--~ 118 (478)
+....++.+++..++.--..--.-+...+.-..++.... +...+-.. ....+..+|-++....+-+... |+..+ .
T Consensus 118 I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~-~ss~~~d~ 196 (823)
T KOG2259|consen 118 ISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVS-PSSLTHDR 196 (823)
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccC-CCcccccH
Confidence 444455666666655444444444445554443333322 22222221 2234555666666555544432 22211 1
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHH---HHHHHHhhccCCCh-H
Q 011744 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQV---FILDALSRYKAADA-R 194 (478)
Q Consensus 119 ~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~---~ll~~l~~~~~~~~-~ 194 (478)
......+..+..|.|+.|+.+|+.+|..+.+ .+.+....+.+.++.+.+..+-... +++.+.++..|... .
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-----g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSE-----GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-----cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 2344557778899999999999999888755 2445555666777766654443332 34444454443211 1
Q ss_pred H------HHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHH-HHHHhhhHHHH-------------------
Q 011744 195 E------AENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN-LCKKMAPPLVT------------------- 248 (478)
Q Consensus 195 ~------~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~-~~~~~~~~l~~------------------- 248 (478)
+ .......+-..+.+.+..|+.+|++.++.+.. . +.+.+.+ +-+++..-+.+
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~-v-See~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ-V-SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHH-h-HHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCccc
Confidence 1 12344455567788889999999999987643 2 3344433 22333221110
Q ss_pred ----------------------------hhc---CC-hhHHHHHHHHHHHHHhhCccchhhccceeeeccCCC-hhHHHH
Q 011744 249 ----------------------------LLS---AE-PEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDP-IYVKME 295 (478)
Q Consensus 249 ----------------------------ll~---~~-~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd-~~ir~~ 295 (478)
+.+ ++ -++|.+|..++..++...|.+-...+..+.-..+|+ ..+|.+
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHH
Confidence 111 11 368999999999999888876554433221123444 778999
Q ss_pred HHHHHHHhcCcccHH-HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 011744 296 KLEIMIKLASDRNID-QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKD 374 (478)
Q Consensus 296 al~lL~~l~~~~n~~-~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~ 374 (478)
|+..|..+++.-.+. +.++.+++-+.|.+.++|..+-.-++.+--.--+....+++-+++.|..-. .=++++|..++.
T Consensus 430 ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~~ 508 (823)
T KOG2259|consen 430 AIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYP-QDRDEILRCMGR 508 (823)
T ss_pred HHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCC-CCcHHHHHHHHH
Confidence 999888887765543 567777777888888887766554443221101223344444444443321 124778888888
Q ss_pred HHhhCCcchHHHHHHHH
Q 011744 375 IFRRYPNTYESIIATLC 391 (478)
Q Consensus 375 i~~~~~~~~~~~i~~L~ 391 (478)
+.++++.+--.....+.
T Consensus 509 iGqnH~~lv~s~m~rfl 525 (823)
T KOG2259|consen 509 IGQNHRRLVLSNMGRFL 525 (823)
T ss_pred HhccChhhHHHHHHHHH
Confidence 88777766555555544
No 41
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.6e-05 Score=81.78 Aligned_cols=275 Identities=13% Similarity=0.181 Sum_probs=178.7
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHH
Q 011744 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI 199 (478)
Q Consensus 120 ~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~ 199 (478)
.+.+.+..++.+++.+|..-|..++..+....+.. +.-....++.+++ .+.+-++-..+|.|.+.+-..+......
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~-l~pavs~Lq~fls---sp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE-LAPAVSVLQLFLS---SPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh-cchHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 45677788888888888888877777665443221 1112223333333 3344444445555544332211111111
Q ss_pred HHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccc---h
Q 011744 200 VERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI---L 275 (478)
Q Consensus 200 l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~---~ 275 (478)
-..+.+++.+.|.++..=|+.+++. .+.++.+. ++.+++..+.+ =+.+.+.++.+++..++..+|.. .
T Consensus 321 N~elE~lItd~NrsIat~AITtLLK----TG~e~sv~----rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~ 392 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLK----TGTESSVD----RLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVM 392 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHH----hcchhHHH----HHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHH
Confidence 1233456677788887778877776 34555554 44445555655 36678888899999999888742 2
Q ss_pred hhccceeeeccCCC-hhHHHHHHHHHHHhc--CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch--hhHHHHH
Q 011744 276 AHEIKVFFCKYNDP-IYVKMEKLEIMIKLA--SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE--RAAERCI 350 (478)
Q Consensus 276 ~~~~~~~~~l~~dd-~~ir~~al~lL~~l~--~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~--~~~~~~i 350 (478)
-+++..+ +.++. .+-|+...+.+..++ +++.-+..+..|-.|+.|+ +++..+++-+..++..-| +....|+
T Consensus 393 m~FL~~~--Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~~Pskyi 468 (865)
T KOG1078|consen 393 MNFLSNM--LREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAPNPSKYI 468 (865)
T ss_pred HHHHHHH--HHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCCCcchhh
Confidence 2222211 23333 667788888887766 4566667888888888876 466777777777887654 4667899
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhh
Q 011744 351 SVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIG 411 (478)
Q Consensus 351 ~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilG 411 (478)
..+.+..-..+..|+.+++..+.++..+.+..++.+...|..++.| .+.+++..+.+.+.
T Consensus 469 r~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D-~DdevRdrAtf~l~ 528 (865)
T KOG1078|consen 469 RFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLND-SDDEVRDRATFYLK 528 (865)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcC-chHHHHHHHHHHHH
Confidence 9999998888999999999999999987888888887777777766 46777766655543
No 42
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.6e-05 Score=80.09 Aligned_cols=397 Identities=13% Similarity=0.135 Sum_probs=197.3
Q ss_pred CCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCc---hHHHHHHHHHHhhcCCCCHHHHH-HHHH-------Hh
Q 011744 2 TVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQP---DLAILAVNTFVKDSQDPNPLIRA-LAVR-------TM 70 (478)
Q Consensus 2 ~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~---e~~~l~in~l~kdL~~~n~~vr~-~AL~-------~l 70 (478)
+.|++.+.......+++.+.+...++-+--.+.-+.+... +.-...+..+.+.+++.++..+. .|+. .|
T Consensus 127 ~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L 206 (569)
T KOG1242|consen 127 SKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL 206 (569)
T ss_pred hhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc
Confidence 4566666666777777777777666655444444443321 11223455666666665554332 1221 22
Q ss_pred cCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh-hcccccccccHHHHHHH-hhcCCChhhHHHHHHHHHHHh
Q 011744 71 GCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD-INAELVEDRGFLESLKD-LISDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 71 ~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~-lL~d~~~~V~~~a~~~l~~i~ 148 (478)
|.-..|. +..+.|.|...+.|..+.||..|..|.-.+.+ ..+..+. .+.+.+.. +..+ ...-..+++..++-+.
T Consensus 207 g~~~EPy-iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK--~llpsll~~l~~~-kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 207 GPPFEPY-IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK--LLLPSLLGSLLEA-KWRTKMASLELLGAMA 282 (569)
T ss_pred CCCCCch-HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh--HhhhhhHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 2222222 23456667777777777777777777766655 3333333 23333322 2222 2222333444443332
Q ss_pred hhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhh
Q 011744 149 ENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEL 228 (478)
Q Consensus 149 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~ 228 (478)
...+ .. + +.-..++++.+...+.++.+.|+-.+..++..+...
T Consensus 283 ~~ap-----------------------~q-------L-------s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 283 DCAP-----------------------KQ-------L-------SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred Hhch-----------------------HH-------H-------HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 2211 00 0 001125667777777888888888888888776654
Q ss_pred cCChHHHHHHHHHhhhHHHHhhcCChhHHHHHHHHHHHHHhh---Cccchhhcccee-eeccCCChhHHHHHHHHHHHhc
Q 011744 229 ITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQR---RPTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLA 304 (478)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~ll~~~~~ir~~aL~~l~~l~~~---~~~~~~~~~~~~-~~l~~dd~~ir~~al~lL~~l~ 304 (478)
+.+++. ...+|.|+.-+.+...---.++..+..=.-. .+..+.-.++++ .-+.+.+.+++|.+..+.-+||
T Consensus 326 idN~dI-----~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 326 IDNPDI-----QKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred hccHHH-----HHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 555542 2456655554442111112222222221100 111111111222 1233456788999988887766
Q ss_pred ----CcccHHHHHHHHH----HhhhhcCHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHhccc-chhHHHHHHHHHHH
Q 011744 305 ----SDRNIDQVLLEFK----EYATEVDVDFVRKAVRAIGRCAIKLERAA-ERCISVLLELIKIK-VNYVVQEAIIVIKD 374 (478)
Q Consensus 305 ----~~~n~~~Iv~~L~----~~l~~~d~~~r~~~v~~i~~l~~~~~~~~-~~~i~~ll~ll~~~-~~~v~~~~~~~l~~ 374 (478)
++..+...+++|+ .-+.+..|+.|..+.++++.+.++..... ...+..+.+.++.. ...-+......+..
T Consensus 401 ~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~e 480 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSE 480 (569)
T ss_pred HhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHH
Confidence 4555555555555 44556789999999999988777654332 22233333333322 22344556666666
Q ss_pred HHhhCC-cchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcccCccC-----CHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011744 375 IFRRYP-NTYESIIATLCESLD-TLDEPEAKASMIWIIGEYAERID-----NADELLESFLESFPEEPAQVQLQLLT 444 (478)
Q Consensus 375 i~~~~~-~~~~~~i~~L~~~l~-~~~~~~~~~~~~~ilGE~~~~~~-----~~~~~l~~l~~~~~~~~~~vk~~il~ 444 (478)
++.... +..+.+...+..... ..-++..+...+|+++=-..... +..+++..+++...+.++.++..++.
T Consensus 481 vl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~ 557 (569)
T KOG1242|consen 481 VLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALE 557 (569)
T ss_pred HHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhh
Confidence 664422 223333333332221 11234456666676654332221 13466666666666666655555443
No 43
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=6.3e-06 Score=77.56 Aligned_cols=352 Identities=17% Similarity=0.175 Sum_probs=229.7
Q ss_pred ccCCChhHHHHHHHHHHHhcccC-chHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCh----hhhhH---HHHHHHHhh
Q 011744 18 MQTENLELKKLVYLYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV----DKITE---YLCDPLQRC 89 (478)
Q Consensus 18 ~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~----~e~~~---~l~~~i~~~ 89 (478)
--|.+....|-+|++....-... .+...-...+++--++|.++.+++.|-..+|++.. .-++- .+-+.+.+.
T Consensus 56 ~ySDnlnlqrsaalafAeitek~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qm 135 (550)
T KOG4224|consen 56 KYSDNLNLQRSAALAFAEITEKGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQM 135 (550)
T ss_pred eeccccccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHh
Confidence 35778888899999877654432 22333446677888999999999999999998742 11111 123345554
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcccccc--cccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccc-cHHHHHHH
Q 011744 90 LKDDDPYVRKTAAICVAKLYDINAELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKL 166 (478)
Q Consensus 90 l~~~~~~VRk~A~~al~~i~~~~p~~~~--~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~-~~~~~~~L 166 (478)
.. +.-.||..|+-|+..+...+..... ..+....+.++-+.+|.+|+.+|..+|..+-... .++..+ ..+.++-|
T Consensus 136 mt-d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvL 213 (550)
T KOG4224|consen 136 MT-DGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVL 213 (550)
T ss_pred cC-CCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhh
Confidence 44 4556899999999998776432211 1245566666778899999999988887653321 122221 22345566
Q ss_pred HHhcccCChhhHHHHHHHHhhccCCChH---HH---HHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH
Q 011744 167 LTALNECTEWGQVFILDALSRYKAADAR---EA---ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240 (478)
Q Consensus 167 l~~l~~~~~~~q~~ll~~l~~~~~~~~~---~~---~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~ 240 (478)
+..++..++-.|...-..++........ .+ .+++..+..+..+.++.|...|..++..+. ++.++...+++
T Consensus 214 Vsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnla---sdt~Yq~eiv~ 290 (550)
T KOG4224|consen 214 VSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLA---SDTEYQREIVE 290 (550)
T ss_pred hhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhc---ccchhhhHHHh
Confidence 7777777887887766666655422110 00 147788888889999999999999988763 35566665544
Q ss_pred -HhhhHHHHhhcCC-hhHHHHHHHHHHHHHhhCc---------cchhhccceeeeccCCChhHHHHHHHHHHHhcC--cc
Q 011744 241 -KMAPPLVTLLSAE-PEIQYVALRNINLIVQRRP---------TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLAS--DR 307 (478)
Q Consensus 241 -~~~~~l~~ll~~~-~~ir~~aL~~l~~l~~~~~---------~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~--~~ 307 (478)
..+|.++.|+.++ --.-....-++..++- +| .++.|.+..+.+ .|...++..|.++|.+++. +.
T Consensus 291 ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~--~dnEeiqchAvstLrnLAasse~ 367 (550)
T KOG4224|consen 291 AGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRA--GDNEEIQCHAVSTLRNLAASSEH 367 (550)
T ss_pred cCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhc--CCchhhhhhHHHHHHHHhhhhhh
Confidence 4566778888432 1122222333433432 22 122333333332 3446799999999999974 66
Q ss_pred cHHHH-----HHHHHHhhhhcCHHHHHHHHHHHHHHHhcc--hh--hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 011744 308 NIDQV-----LLEFKEYATEVDVDFVRKAVRAIGRCAIKL--ER--AAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (478)
Q Consensus 308 n~~~I-----v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~--~~--~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~ 377 (478)
|+..| ++.+.+.+.|.+-+++.++-.++..++-.- .. ...-+++.++.+..+.+..++..+...+.++.+
T Consensus 368 n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 368 NVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred hhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 77765 678888899999999999999988877531 11 112356778888888888888888888877754
No 44
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.59 E-value=3.3e-05 Score=76.00 Aligned_cols=258 Identities=22% Similarity=0.271 Sum_probs=163.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 011744 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (478)
Q Consensus 46 l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l 125 (478)
.....+.+.+.++++.+|..|...++.++..+.++. +.+.+.|.++.||..|+.+++++. +|+ ..+.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~~----l~~~l~d~~~~vr~~a~~aLg~~~--~~~------a~~~l 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPL----LRELLSDEDPRVRDAAADALGELG--DPE------AVPPL 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHHH----HHHHhcCCCHHHHHHHHHHHHccC--Chh------HHHHH
Confidence 357788899999999999999999999988877776 899999999999999999888763 233 45667
Q ss_pred HHhhc-CCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhh
Q 011744 126 KDLIS-DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVT 204 (478)
Q Consensus 126 ~~lL~-d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~ 204 (478)
..++. |.+..|+.+|..++..+.... .+..++..+.+...+.+....
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~---------------------- 158 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAAL---------------------- 158 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhc----------------------
Confidence 77666 899999999999999986543 234455544433322210000
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccceee
Q 011744 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFF 283 (478)
Q Consensus 205 ~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~ 283 (478)
......++..++..+..+ +++. ..+.+..++. .+..+|..|...+..+....+....... .
T Consensus 159 ---~~~~~~~r~~a~~~l~~~----~~~~--------~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~---~ 220 (335)
T COG1413 159 ---DAALLDVRAAAAEALGEL----GDPE--------AIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLV---K 220 (335)
T ss_pred ---cchHHHHHHHHHHHHHHc----CChh--------hhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHH---H
Confidence 011116778888877763 4543 2345556665 5678999999999998875411111111 1
Q ss_pred eccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchh
Q 011744 284 CKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNY 363 (478)
Q Consensus 284 ~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~ 363 (478)
.+.+++..+|.+++..|..+..++....+... +.+.+..++.......+ .. ........+...+.+....
T Consensus 221 ~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~~~----l~~~~~~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~ 290 (335)
T COG1413 221 ALSDESLEVRKAALLALGEIGDEEAVDALAKA----LEDEDVILALLAAAALG--AL----DLAEAALPLLLLLIDEANA 290 (335)
T ss_pred HhcCCCHHHHHHHHHHhcccCcchhHHHHHHH----HhccchHHHHHHHHHhc--cc----CchhhHHHHHHHhhcchhh
Confidence 23455688999999999888877665555444 44666555544433332 10 0011122233334455555
Q ss_pred HHHHHHHHHHHH
Q 011744 364 VVQEAIIVIKDI 375 (478)
Q Consensus 364 v~~~~~~~l~~i 375 (478)
++.+....+.++
T Consensus 291 ~~~~~~~~l~~~ 302 (335)
T COG1413 291 VRLEAALALGQI 302 (335)
T ss_pred HHHHHHHHHHhh
Confidence 555555555544
No 45
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.59 E-value=9.9e-06 Score=80.73 Aligned_cols=150 Identities=16% Similarity=0.093 Sum_probs=96.8
Q ss_pred hHHHHHHhcc-CCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHh
Q 011744 10 LFTDVVNCMQ-TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQR 88 (478)
Q Consensus 10 ~~~~ii~l~~-s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~ 88 (478)
+...++..+. .++......+-+++. ...++. ++..+.+.+.+.++.+|..|.+.|+.++.+...+. +..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~~----~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~----L~~ 124 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL--AQEDAL----DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW----LEP 124 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh--ccCChH----HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH----HHH
Confidence 4455666674 455555554333332 223222 37888889999999999999999999988887766 677
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHH
Q 011744 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (478)
Q Consensus 89 ~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~ 168 (478)
.+.+++|.||..++.++.. .... -.+.+..+|+|.|+.|+..|+.+++.+..... ...|..
T Consensus 125 ~L~~~~p~vR~aal~al~~-r~~~--------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a----------~~~L~~ 185 (410)
T TIGR02270 125 LLAASEPPGRAIGLAALGA-HRHD--------PGPALEAALTHEDALVRAAALRALGELPRRLS----------ESTLRL 185 (410)
T ss_pred HhcCCChHHHHHHHHHHHh-hccC--------hHHHHHHHhcCCCHHHHHHHHHHHHhhccccc----------hHHHHH
Confidence 7788888888877755554 2211 23677777888888888888888888764331 223334
Q ss_pred hcccCChhhHHHHHHHHhhc
Q 011744 169 ALNECTEWGQVFILDALSRY 188 (478)
Q Consensus 169 ~l~~~~~~~q~~ll~~l~~~ 188 (478)
.+.+.+|-...-.+..+..+
T Consensus 186 al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 186 YLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHcCCCHHHHHHHHHHHHHc
Confidence 44455555554444444443
No 46
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.59 E-value=0.00029 Score=74.12 Aligned_cols=332 Identities=12% Similarity=0.175 Sum_probs=187.1
Q ss_pred CCCchhhHHHHHHhc---cCCChhHHHHHHHHHHHhcccC--------chHHHHHHHHHHhhcC----------------
Q 011744 4 GKDVSSLFTDVVNCM---QTENLELKKLVYLYLINYAKSQ--------PDLAILAVNTFVKDSQ---------------- 56 (478)
Q Consensus 4 G~d~~~~~~~ii~l~---~s~~~~~Krl~yl~l~~~~~~~--------~e~~~l~in~l~kdL~---------------- 56 (478)
|.-+++..+-+.+.. +..+-++|.-..-+++.+...+ ||+.-+.++.+.-|=+
T Consensus 249 ~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed 328 (1233)
T KOG1824|consen 249 GSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLED 328 (1233)
T ss_pred hcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhc
Confidence 555666777777766 7778888888888888766444 5566666666632221
Q ss_pred -CCCH-------------HHHHHHHHHhcCCCh------hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc-
Q 011744 57 -DPNP-------------LIRALAVRTMGCIRV------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL- 115 (478)
Q Consensus 57 -~~n~-------------~vr~~AL~~l~~i~~------~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~- 115 (478)
+.++ .||..|.+++..+.+ |++.+.+.|.+..-+++.+..||--...+.....+.-|-.
T Consensus 329 ~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~ 408 (1233)
T KOG1824|consen 329 EEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVI 408 (1233)
T ss_pred cccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc
Confidence 0111 488899998877532 3455567788888888999999988887777776643211
Q ss_pred --------ccc--------------ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccC
Q 011744 116 --------VED--------------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNEC 173 (478)
Q Consensus 116 --------~~~--------------~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~ 173 (478)
.+. ..++..+.+-++++....+..++..|.++....|+...+-....++.+...+++.
T Consensus 409 ~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~Dk 488 (1233)
T KOG1824|consen 409 EVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDK 488 (1233)
T ss_pred ccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCc
Confidence 110 1233444445555555566777788877766655433222223344555556554
Q ss_pred ChhhHHHH--HHHHh-hccCCChHHHHHHH----HHhhhhhcCCChHHHHHHHHHHHHhhhhcC---------ChHHHHH
Q 011744 174 TEWGQVFI--LDALS-RYKAADAREAENIV----ERVTPRLQHANCAVVLSAVKMILQQMELIT---------STDVVRN 237 (478)
Q Consensus 174 ~~~~q~~l--l~~l~-~~~~~~~~~~~~~l----~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~---------~~~~~~~ 237 (478)
+.-.+.++ |-++. .+....++.....+ ..+.....++=+-|..||..+...+...+. -+..+.
T Consensus 489 Ssss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~- 567 (1233)
T KOG1824|consen 489 SSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVK- 567 (1233)
T ss_pred cchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHH-
Confidence 44444332 22221 22222333333333 334444556666788888777766543221 112222
Q ss_pred HHHHhhhHHH-Hhhc--CChhHHHHHHHHHHHHHhhCccchhhccc-ee--e--eccCCChhHHHHHHHHHHHhc-----
Q 011744 238 LCKKMAPPLV-TLLS--AEPEIQYVALRNINLIVQRRPTILAHEIK-VF--F--CKYNDPIYVKMEKLEIMIKLA----- 304 (478)
Q Consensus 238 ~~~~~~~~l~-~ll~--~~~~ir~~aL~~l~~l~~~~~~~~~~~~~-~~--~--~l~~dd~~ir~~al~lL~~l~----- 304 (478)
.+..... +|-+ .|.++|-.|..+++.+.....+......+ ++ + .+.++. .|.-|...+..++
T Consensus 568 ---~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi--TRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 568 ---TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI--TRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred ---HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh--HHHHHHHHHHHHHhccce
Confidence 2333323 4443 47899999999999999876666655543 11 1 123433 3333444333322
Q ss_pred -C-cccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhc
Q 011744 305 -S-DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (478)
Q Consensus 305 -~-~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~ 341 (478)
+ ..+...+++++..|++......|.....++-.+.+.
T Consensus 643 i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~ 681 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKN 681 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 345667888888887765544554444444444433
No 47
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.56 E-value=5e-05 Score=75.74 Aligned_cols=188 Identities=17% Similarity=0.060 Sum_probs=95.8
Q ss_pred CchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHH----HHHHHHhhc-CCCCHHHHHHHHHHhcCCChhhhhH
Q 011744 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL----AVNTFVKDS-QDPNPLIRALAVRTMGCIRVDKITE 80 (478)
Q Consensus 6 d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l----~in~l~kdL-~~~n~~vr~~AL~~l~~i~~~e~~~ 80 (478)
+..|++..=-..+.++++....+.-+==....+- |-+.. ++..+...+ .++++.++..|...+.....+..++
T Consensus 12 eAaFlw~~~~~a~~~p~~~l~~la~ldeRL~AhL--dgL~~~G~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~ 89 (410)
T TIGR02270 12 EAAFLWRQWKRALVAPDYVLEDLAELEERLLAHV--DGLVLAGKAATELLVSALAEADEPGRVACAALALLAQEDALDLR 89 (410)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHHHH--HHHHHhhHhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHH
Confidence 3445555555566777776666544322211111 11111 244555555 3455666666666665544444333
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccH
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~ 160 (478)
. +...+.|.++.||..|+.++.++.. ..+.+.|..+|.+.+|.|+.+++.++..... .
T Consensus 90 ~----L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~--------- 147 (410)
T TIGR02270 90 S----VLAVLQAGPEGLCAGIQAALGWLGG--------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH-D--------- 147 (410)
T ss_pred H----HHHHhcCCCHHHHHHHHHHHhcCCc--------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-C---------
Confidence 3 6666666666677777777765422 1355666666677777777666655544211 1
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHH
Q 011744 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (478)
Q Consensus 161 ~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 224 (478)
....+...+.+.++......++.++.+... ..++.+...+.+.++.|+..|+..+..
T Consensus 148 -~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 148 -PGPALEAALTHEDALVRAAALRALGELPRR------LSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred -hHHHHHHHhcCCCHHHHHHHHHHHHhhccc------cchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 122334444455555555555555554422 122333344555555666555555544
No 48
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=2.2e-06 Score=80.54 Aligned_cols=325 Identities=15% Similarity=0.149 Sum_probs=206.9
Q ss_pred HHHhccCCChhHHHHHHHHHHHhcccCchH----HHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHH------HH
Q 011744 14 VVNCMQTENLELKKLVYLYLINYAKSQPDL----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEY------LC 83 (478)
Q Consensus 14 ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~----~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~------l~ 83 (478)
+.-+++|.+..+.+.|-.++..++-..... .++....+......++-.+|+.|...+.++.+-+-... -.
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 444789999999999999888776443221 12233446677778888899999998888764322111 12
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHhh---cccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCC--Ccccc
Q 011744 84 DPLQRCLKDDDPYVRKTAAICVAKLYDI---NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR--PIFEI 158 (478)
Q Consensus 84 ~~i~~~l~~~~~~VRk~A~~al~~i~~~---~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~--~~~~~ 158 (478)
.++.++.++++..||+.|.-++..+-.. -..++. .+-+|.+..++...|+.|+.-+..+++.|.-.... ...+-
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~-aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqa 248 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVH-AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQA 248 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhc-cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhc
Confidence 3355688899999999999888776432 223343 46789999999999999999888888877543210 00111
Q ss_pred cHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHH-----HHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChH
Q 011744 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTD 233 (478)
Q Consensus 159 ~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~-----~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~ 233 (478)
-++.++.|+....++++-.++..--.|+.+..++. ...+ -++.+..+++++.--...+.+-++-++.-+-.++.
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV 327 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc
Confidence 12355666666667788777765455555543321 1112 24556677777655555566666633321101222
Q ss_pred HHHHHHHHhhhHHHHhhc-CC-hhHHHHHHHHHHHHHhhCc---cchhh--ccceeeec-cCCChhHHHHHHHHHHHhcC
Q 011744 234 VVRNLCKKMAPPLVTLLS-AE-PEIQYVALRNINLIVQRRP---TILAH--EIKVFFCK-YNDPIYVKMEKLEIMIKLAS 305 (478)
Q Consensus 234 ~~~~~~~~~~~~l~~ll~-~~-~~ir~~aL~~l~~l~~~~~---~~~~~--~~~~~~~l-~~dd~~ir~~al~lL~~l~~ 305 (478)
.+.. ....++|+++|. .| .+++..|..++..++..+. ..+.. -++-+.++ .+.+.+++.+.-..+..++=
T Consensus 328 lI~d--agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 328 LIAD--AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred ceec--ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 2211 145678999997 55 4599999999999987432 22221 13323233 45567888776666666654
Q ss_pred cccHH------HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcc
Q 011744 306 DRNID------QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL 342 (478)
Q Consensus 306 ~~n~~------~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~ 342 (478)
.+|-+ .|++-|+.+.-+.+.++|-++..+++.+.+..
T Consensus 406 ~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 406 NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 44433 26777888888889999999999998888653
No 49
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.56 E-value=0.00022 Score=73.10 Aligned_cols=436 Identities=14% Similarity=0.116 Sum_probs=244.6
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcccC---ch-HHHHHHHHHHhhcC-------C-CCHHHHHHHHHHhcCCChhhhhH
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYAKSQ---PD-LAILAVNTFVKDSQ-------D-PNPLIRALAVRTMGCIRVDKITE 80 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~~~~---~e-~~~l~in~l~kdL~-------~-~n~~vr~~AL~~l~~i~~~e~~~ 80 (478)
-.++-++|+|-+.|++......++...+ |+ .-.-+.+.+.+.+- - .+..+.-.+...-.++++.+++.
T Consensus 640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~ 719 (1172)
T KOG0213|consen 640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVS 719 (1172)
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHH
Confidence 3445678999999999998888876553 11 11112232322111 1 11223333334445566666665
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc-ccc---ccHHHHHHHhhcC--CChhhHHHHHHHHHHHhhhCCCC
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL-VED---RGFLESLKDLISD--NNPMVVANAVAALAEIEENSSRP 154 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~-~~~---~~~~~~l~~lL~d--~~~~V~~~a~~~l~~i~~~~~~~ 154 (478)
- +..-+.|+++.-||-++.++-+++..-+.. +++ ..+++.+...+.+ .+.+|+...+.+... .-...
T Consensus 720 R----~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~---~lg~r 792 (1172)
T KOG0213|consen 720 R----VVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVN---ALGGR 792 (1172)
T ss_pred H----HhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHH---HHhhc
Confidence 5 666678899999999999999998755422 221 1344555455543 334455444433321 11111
Q ss_pred cccccHHHHHHHHHhcccCChhhHHHHHHHHhhccC-----CChHHHHHHHHHhhhhhcCCChHHH---HHHHHHHHHhh
Q 011744 155 IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA-----ADAREAENIVERVTPRLQHANCAVV---LSAVKMILQQM 226 (478)
Q Consensus 155 ~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~-----~~~~~~~~~l~~l~~~l~~~~~~V~---~ea~~~i~~~~ 226 (478)
......+++..+++.|+..++-......++++.+.+ .+.+....+=..+...+....+.|+ +.|+++|.+..
T Consensus 793 ~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 793 VKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred cccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 122344567778888887777777666666655431 1111222222223334444445443 45555555432
Q ss_pred hhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchh--hccc-ee---eeccCCChhHHHHHHHH
Q 011744 227 ELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA--HEIK-VF---FCKYNDPIYVKMEKLEI 299 (478)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~--~~~~-~~---~~l~~dd~~ir~~al~l 299 (478)
+-..... -++.++|.|.-+|. ++.-++-.++..+..|+.+.|+.+. ++.. +| ..|..-..+||+.|.+.
T Consensus 873 ---gm~km~p-Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 873 ---GMTKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred ---cccccCC-ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111110 12356666666664 5677888899999999999888653 3444 22 23445568999999999
Q ss_pred HHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhC
Q 011744 300 MIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY 379 (478)
Q Consensus 300 L~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~ 379 (478)
+..++..--=.+++..|++-++..+-.-|.-..-+|+..++...+. ..+.++++=.....-.|.+.++..+.-+.+-.
T Consensus 949 fG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF--tVLPalmneYrtPe~nVQnGVLkalsf~Feyi 1026 (1172)
T KOG0213|consen 949 FGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF--TVLPALMNEYRTPEANVQNGVLKALSFMFEYI 1026 (1172)
T ss_pred hhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch--hhhHHHHhhccCchhHHHHhHHHHHHHHHHHH
Confidence 9887765555678888888887766666666666777777764433 45666666555555556666666555444322
Q ss_pred Ccch---HHHHHHHH-hhcCCCChhhHHHHHH-----HHhhcccCccCC-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 011744 380 PNTY---ESIIATLC-ESLDTLDEPEAKASMI-----WIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKL 449 (478)
Q Consensus 380 ~~~~---~~~i~~L~-~~l~~~~~~~~~~~~~-----~ilGE~~~~~~~-~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl 449 (478)
.+.. -+++.-|+ +.+-+ .|+.-++.++ -.+|=+|.-..+ ...+++.+.-+..+.+|++......++=-+
T Consensus 1027 gemskdYiyav~PlleDAlmD-rD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1027 GEMSKDYIYAVTPLLEDALMD-RDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGL 1105 (1172)
T ss_pred HHHhhhHHHHhhHHHHHhhcc-ccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHH
Confidence 2222 23333332 33332 1332244443 345644432111 224445555577788999999998888777
Q ss_pred hccCCCcchHHHHHHH
Q 011744 450 FLKKPTEGPQQMIQVT 465 (478)
Q Consensus 450 ~~~~~~~~~~~~~~~~ 465 (478)
.....+ ..+++++
T Consensus 1106 r~~Lg~---~~~~~Y~ 1118 (1172)
T KOG0213|consen 1106 RVALGP---QAMLKYC 1118 (1172)
T ss_pred HHHhch---HHHHHHH
Confidence 655443 4444444
No 50
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.55 E-value=5.1e-07 Score=69.98 Aligned_cols=86 Identities=30% Similarity=0.471 Sum_probs=70.2
Q ss_pred HHHHHhhc-CCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 011744 48 VNTFVKDS-QDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (478)
Q Consensus 48 in~l~kdL-~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 126 (478)
++.|.+.+ +++|+.+|..|++.++.+++++..+. +..++.|+++.||..|+.++.++.. | ...+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~----L~~~l~d~~~~vr~~a~~aL~~i~~--~------~~~~~L~ 68 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPEAIPA----LIELLKDEDPMVRRAAARALGRIGD--P------EAIPALI 68 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHH----HHHHHTSSSHHHHHHHHHHHHCCHH--H------HTHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHH----HHHHHcCCCHHHHHHHHHHHHHhCC--H------HHHHHHH
Confidence 35677888 89999999999999999998876555 7888899999999999999998742 2 3568888
Q ss_pred HhhcC-CChhhHHHHHHHHH
Q 011744 127 DLISD-NNPMVVANAVAALA 145 (478)
Q Consensus 127 ~lL~d-~~~~V~~~a~~~l~ 145 (478)
+++.| ++..|+.+|+.+|+
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87755 56778888888764
No 51
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.54 E-value=5.6e-05 Score=75.21 Aligned_cols=417 Identities=13% Similarity=0.150 Sum_probs=228.4
Q ss_pred HHHhccCCChhHHHHHHHHHHHhcccCc-------hHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhh--------
Q 011744 14 VVNCMQTENLELKKLVYLYLINYAKSQP-------DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI-------- 78 (478)
Q Consensus 14 ii~l~~s~~~~~Krl~yl~l~~~~~~~~-------e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~-------- 78 (478)
+....++++.++..-++.-+..+..-.- |.++ -.-.-.-+.|+|+.+...|..+.+.|..+|+
T Consensus 226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL--~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~ 303 (858)
T COG5215 226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL--AALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY 303 (858)
T ss_pred eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence 3346777887777666554433221110 1110 1112345679999999999999987754332
Q ss_pred ---------------hHHHHHHHHhhcCC-------CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhh
Q 011744 79 ---------------TEYLCDPLQRCLKD-------DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (478)
Q Consensus 79 ---------------~~~l~~~i~~~l~~-------~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V 136 (478)
+..++|.+.++|.. .++.+-+.|..|+.-+.+...+.+-+ .....+.+-+..++-.=
T Consensus 304 ~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~-pVl~FvEqni~~~~w~n 382 (858)
T COG5215 304 LPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR-PVLGFVEQNIRSESWAN 382 (858)
T ss_pred cccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH-HHHHHHHHhccCchhhh
Confidence 33478888888853 45678888888887666665555443 23466666777788888
Q ss_pred HHHHHHHHHHHhhhCCCCc-ccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHH---HHHHHHhhhhhc--CC
Q 011744 137 VANAVAALAEIEENSSRPI-FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA---ENIVERVTPRLQ--HA 210 (478)
Q Consensus 137 ~~~a~~~l~~i~~~~~~~~-~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~---~~~l~~l~~~l~--~~ 210 (478)
+.+|+.+++.+....+... -...+..++.+.+..+++.-|..-..-+.++.+...-++-. ..+...+...+. ..
T Consensus 383 reaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D 462 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD 462 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc
Confidence 8999999999876543322 23344556666666666555655544444443321100000 011111111221 24
Q ss_pred ChHHHHHHHHHHHHhhhhcCC-----hHHHHHHHHHhhhHHHHhh---cCChhHHHHHHHHHHHHHhhCccchhhcccee
Q 011744 211 NCAVVLSAVKMILQQMELITS-----TDVVRNLCKKMAPPLVTLL---SAEPEIQYVALRNINLIVQRRPTILAHEIKVF 282 (478)
Q Consensus 211 ~~~V~~ea~~~i~~~~~~~~~-----~~~~~~~~~~~~~~l~~ll---~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~ 282 (478)
+|.+...+.+.+..+.++++. ++.+...--.+++.|+.-- .++.|.|-.+.++|+.+....|+.+.+-+..|
T Consensus 463 ~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~ 542 (858)
T COG5215 463 CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGF 542 (858)
T ss_pred cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 567778888888777655432 1222221123444444322 35789999999999999988787766543322
Q ss_pred eeccCCChhHHHHHHH----HHHHhc-CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchh----hHHHHHHHH
Q 011744 283 FCKYNDPIYVKMEKLE----IMIKLA-SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER----AAERCISVL 353 (478)
Q Consensus 283 ~~l~~dd~~ir~~al~----lL~~l~-~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~----~~~~~i~~l 353 (478)
+ ++-..+++ ++.++- .++. ..+ .++..+.+..+..+..++++ ..+.....+
T Consensus 543 ~-------~~~~~kl~~~isv~~q~l~~eD~--~~~-----------~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf 602 (858)
T COG5215 543 Y-------DYTSKKLDECISVLGQILATEDQ--LLV-----------EELQSNYIGVLEAIIRTRRRDIEDVEDQLMELF 602 (858)
T ss_pred H-------HHHHHHHHHHHHHhhhhhhhHHH--HHH-----------HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 1 11111221 111110 1100 012 23445555556555555543 334456666
Q ss_pred HHHhcccch-hHHHHHHHHHHHHHhhCCcchH----HHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC-----HHHH
Q 011744 354 LELIKIKVN-YVVQEAIIVIKDIFRRYPNTYE----SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADEL 423 (478)
Q Consensus 354 l~ll~~~~~-~v~~~~~~~l~~i~~~~~~~~~----~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~-----~~~~ 423 (478)
+++++...+ .+-.++...+..+...-.+..+ +.+..|...+ ...+..+..+++-++|..++.... +..+
T Consensus 603 ~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~d~~v~~~avglvgdlantl~~df~~y~d~~ 681 (858)
T COG5215 603 IRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL-NCTDRFVLNSAVGLVGDLANTLGTDFNIYADVL 681 (858)
T ss_pred HHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 666776643 3455666666666543333333 3344444444 334555666777777776655432 4455
Q ss_pred HHHHhhcCCCC--CHHHHHHHHHHHHHHhccCC
Q 011744 424 LESFLESFPEE--PAQVQLQLLTATVKLFLKKP 454 (478)
Q Consensus 424 l~~l~~~~~~~--~~~vk~~il~a~~Kl~~~~~ 454 (478)
...+.+.+..+ ..++|-.||+.+.-++....
T Consensus 682 ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaig 714 (858)
T COG5215 682 MSSLVQCLSSEATHRDLKPAILSVFGDIALAIG 714 (858)
T ss_pred HHHHHHHhcChhhccccchHHHHHHHHHHHHHh
Confidence 55566655433 45677788888777776543
No 52
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.00017 Score=71.90 Aligned_cols=179 Identities=11% Similarity=0.085 Sum_probs=113.1
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHh-hcccc---cccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHH
Q 011744 87 QRCLKDDDPYVRKTAAICVAKLYD-INAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (478)
Q Consensus 87 ~~~l~~~~~~VRk~A~~al~~i~~-~~p~~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~ 162 (478)
.....+++..-||-+.+++.-..- ..++. .. +.++.+..+++|+|..|+.-|+..++.|++-..+..+..+..+
T Consensus 49 ~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~--~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~i 126 (675)
T KOG0212|consen 49 GDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE--KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEI 126 (675)
T ss_pred HHhccCcccccccchHHHHHHHHHHhccccHHHHH--HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHH
Confidence 344556777778877666655422 22222 33 5778888999999999999999999999887666667777778
Q ss_pred HHHHHHhcccCChhhH--HH-HHHHHhhccCCChH--HHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHH
Q 011744 163 LSKLLTALNECTEWGQ--VF-ILDALSRYKAADAR--EAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN 237 (478)
Q Consensus 163 ~~~Ll~~l~~~~~~~q--~~-ll~~l~~~~~~~~~--~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~ 237 (478)
+.-+++...++++-.+ .. +=|+++....+... ....+++-+...+...|+..+.-.+..+..+. ..++-+++.
T Consensus 127 FdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Ld-s~P~~~m~~- 204 (675)
T KOG0212|consen 127 FDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLD-SVPDLEMIS- 204 (675)
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCcHHHHh-
Confidence 8888776655543222 11 23444444322221 23456666666777788988888887776553 234444443
Q ss_pred HHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHh
Q 011744 238 LCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQ 269 (478)
Q Consensus 238 ~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~ 269 (478)
....+.+.|...|+ +.+++|...=..+..+.+
T Consensus 205 yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 205 YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 22345566677776 567888766665655543
No 53
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.51 E-value=0.0002 Score=75.34 Aligned_cols=171 Identities=11% Similarity=0.131 Sum_probs=113.6
Q ss_pred HHHHHhh-cCCCCHHHHHHHHH-HhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 011744 48 VNTFVKD-SQDPNPLIRALAVR-TMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (478)
Q Consensus 48 in~l~kd-L~~~n~~vr~~AL~-~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l 125 (478)
+..++.. +.+.|...|.-|++ .++.+...+-...+.|+|.+...+.|.-+||--..-+.+..+.+|+... -.++.+
T Consensus 20 ~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l--LavNti 97 (757)
T COG5096 20 VAALSSGRLESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL--LAVNTI 97 (757)
T ss_pred HhhhccccccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH--HHHHHH
Confidence 3455555 88888888888887 4555544444777888888888888888888888888888888886543 245777
Q ss_pred HHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHH-HH-HHHHh
Q 011744 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA-EN-IVERV 203 (478)
Q Consensus 126 ~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~-~~-~l~~l 203 (478)
.+=+.|+|+.+|..|+..++.+... ++....+..+.+.+.+++++..-.+.-.+.++..-+++.. +. .+...
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l 171 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDIL 171 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHH
Confidence 7777888898998888888776432 1223445555556667777665543333333222222211 12 34445
Q ss_pred hhhhcCCChHHHHHHHHHHHHhh
Q 011744 204 TPRLQHANCAVVLSAVKMILQQM 226 (478)
Q Consensus 204 ~~~l~~~~~~V~~ea~~~i~~~~ 226 (478)
..++.+.+|-|..+|..++..+.
T Consensus 172 ~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 172 KELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHhhCCCchHHHHHHHHHHHhc
Confidence 55778899999999988888763
No 54
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.50 E-value=0.00021 Score=75.62 Aligned_cols=320 Identities=20% Similarity=0.253 Sum_probs=180.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCCh-----hhhhH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHhh--cccccccc
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV-----DKITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDI--NAELVEDR 119 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~~-----~e~~~-~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~--~p~~~~~~ 119 (478)
+..|.+-|+++|+....+|+.+|.++.. .+|.+ .+++.+.+++.+++..++..|...++++.-. ....+...
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~ 371 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSL 371 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHC
Confidence 4567788899999999999999988752 23332 5788899999999999999999999887431 11223335
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCC-CcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHH
Q 011744 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN 198 (478)
Q Consensus 120 ~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~ 198 (478)
+++|.+..+|.|++ .+..++..|+.++..+.. ..+... ..++.+++ ++..
T Consensus 372 GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~---------------~Ll~----------- 422 (708)
T PF05804_consen 372 GLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYT-DCIPQLMQ---------------MLLE----------- 422 (708)
T ss_pred CCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHH---------------HHHh-----------
Confidence 88999999998654 445567777777654311 001000 11112222 1111
Q ss_pred HHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhh-c-CChhHHHHHHHHHHHHHhhCcc--
Q 011744 199 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-S-AEPEIQYVALRNINLIVQRRPT-- 273 (478)
Q Consensus 199 ~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll-~-~~~~ir~~aL~~l~~l~~~~~~-- 273 (478)
++++.|-.+++.+..+++- ++...+.++. +..+.|+... + +|+ ..++.+..++++.+.
T Consensus 423 ----------~~~~~v~~eliaL~iNLa~---~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 423 ----------NSEEEVQLELIALLINLAL---NKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLK 485 (708)
T ss_pred ----------CCCccccHHHHHHHHHHhc---CHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHH
Confidence 1112222222222222210 1111111111 1122222211 1 222 223444444444321
Q ss_pred -chhhcccee-e-eccCCChhHHHHHHHHHHHhcCc-ccHHHHHHH--HHHhhhh------cCHHHHHHHHHHHHHHHhc
Q 011744 274 -ILAHEIKVF-F-CKYNDPIYVKMEKLEIMIKLASD-RNIDQVLLE--FKEYATE------VDVDFVRKAVRAIGRCAIK 341 (478)
Q Consensus 274 -~~~~~~~~~-~-~l~~dd~~ir~~al~lL~~l~~~-~n~~~Iv~~--L~~~l~~------~d~~~r~~~v~~i~~l~~~ 341 (478)
.|.+++..+ . +...++.+..-.++-+|.++..+ .++..++++ |+.|+.+ .++++.-++|..+|.++..
T Consensus 486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d 565 (708)
T PF05804_consen 486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD 565 (708)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC
Confidence 233333211 1 11234567777888888887643 467777664 4455432 4568888999888877743
Q ss_pred chhhH-----HHHHHHHHHHhcccc--hhHHHHHHHHHHHHHhhCCcchHH------HHHHHHhhcCCCChhhHHHHH--
Q 011744 342 LERAA-----ERCISVLLELIKIKV--NYVVQEAIIVIKDIFRRYPNTYES------IIATLCESLDTLDEPEAKASM-- 406 (478)
Q Consensus 342 ~~~~~-----~~~i~~ll~ll~~~~--~~v~~~~~~~l~~i~~~~~~~~~~------~i~~L~~~l~~~~~~~~~~~~-- 406 (478)
+..+ ..+++.+.++|.... +.+.-+++.++.+++.+ ++.++. ++..+++.+.+- ++++++.|
T Consensus 566 -~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~-N~~ir~~~d~ 642 (708)
T PF05804_consen 566 -PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDK-NAEIRKVCDN 642 (708)
T ss_pred -HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCC-CHHHHHHHHH
Confidence 1222 345889999988754 66778888888888865 555544 455677777763 56666544
Q ss_pred -HHHhhcccCc
Q 011744 407 -IWIIGEYAER 416 (478)
Q Consensus 407 -~~ilGE~~~~ 416 (478)
.-+++||...
T Consensus 643 ~Ldii~e~d~~ 653 (708)
T PF05804_consen 643 ALDIIAEYDEE 653 (708)
T ss_pred HHHHHHHhCHH
Confidence 6788888653
No 55
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.49 E-value=6.1e-05 Score=74.08 Aligned_cols=110 Identities=21% Similarity=0.245 Sum_probs=86.6
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhh
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~ 89 (478)
....+.+++.++++..|.-+...+..+... -+++.+.+-+.+.++.+|..|..+++.+++++.++.++..+.+
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE------EAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------HHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-
Confidence 345677888899999998888776655322 2588999999999999999999999999999988885555544
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhh
Q 011744 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (478)
Q Consensus 90 l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V 136 (478)
|++.+||..|+.++.++.... .++.+...++|.+..+
T Consensus 117 --d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~ 153 (335)
T COG1413 117 --DENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGS 153 (335)
T ss_pred --CCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhh
Confidence 899999999999999886532 2466667777766444
No 56
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.43 E-value=0.00025 Score=74.56 Aligned_cols=299 Identities=17% Similarity=0.191 Sum_probs=173.9
Q ss_pred HHHHHHHhhcCC--CCHHHHHHHHHHhcCCCh---hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccccccc
Q 011744 46 LAVNTFVKDSQD--PNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120 (478)
Q Consensus 46 l~in~l~kdL~~--~n~~vr~~AL~~l~~i~~---~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~ 120 (478)
-.+..+.+|+++ .+..+|-.|+-++|.++- ..-.+.+...+.+++.+++..|+++|+.|++.+.-.+- + .
T Consensus 817 s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl---~--~ 891 (1233)
T KOG1824|consen 817 SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNL---P--K 891 (1233)
T ss_pred hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCch---H--h
Confidence 345577778874 567899999999999862 23344555679999999999999999999999865321 1 3
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcc---cC-ChhhHHHHHHHHhhccCCChHHH
Q 011744 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN---EC-TEWGQVFILDALSRYKAADAREA 196 (478)
Q Consensus 121 ~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~---~~-~~~~q~~ll~~l~~~~~~~~~~~ 196 (478)
+.|.+.... +.+|-=++--+..+-++....... .+.+.+.++...|. ++ .+...-.+-..|+++.--+++
T Consensus 892 yLpfil~qi-~sqpk~QyLLLhSlkevi~~~svd---~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe-- 965 (1233)
T KOG1824|consen 892 YLPFILEQI-ESQPKRQYLLLHSLKEVIVSASVD---GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE-- 965 (1233)
T ss_pred HHHHHHHHH-hcchHhHHHHHHHHHHHHHHhccc---hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH--
Confidence 556665544 345555555566666654433221 22333444433332 12 234444456667766544433
Q ss_pred HHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccch
Q 011744 197 ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTIL 275 (478)
Q Consensus 197 ~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~ 275 (478)
.++..+...+.+..+..+.-++.++=... ...|.-+..+.++.++.+.+++. .|.++|.+||.++...+.+.|..+
T Consensus 966 -sLlpkL~~~~~S~a~~~rs~vvsavKfsi--sd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslI 1042 (1233)
T KOG1824|consen 966 -SLLPKLKLLLRSEASNTRSSVVSAVKFSI--SDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLI 1042 (1233)
T ss_pred -HHHHHHHHHhcCCCcchhhhhhheeeeee--cCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHH
Confidence 56777777777777665555554442211 01333344444444555555564 789999999999999998877543
Q ss_pred hhc------------------cc-----eeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhh---cCHHHHH
Q 011744 276 AHE------------------IK-----VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATE---VDVDFVR 329 (478)
Q Consensus 276 ~~~------------------~~-----~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~---~d~~~r~ 329 (478)
..- ++ -|.---+|...+|+.|.+.+|.+.+.--=..=+.++++++.+ ...+++-
T Consensus 1043 rDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~DhydiKm 1122 (1233)
T KOG1824|consen 1043 RDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDHYDIKM 1122 (1233)
T ss_pred HHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchhhHHHH
Confidence 211 11 122223556899999999999875321000012233333332 1244544
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHhc
Q 011744 330 KAVRAIGRCAIKLERAAERCISVLLELIK 358 (478)
Q Consensus 330 ~~v~~i~~l~~~~~~~~~~~i~~ll~ll~ 358 (478)
-...-+.+++...|...-.-+|.+++=|.
T Consensus 1123 lt~l~l~rLa~lcPs~VlqrlD~l~EpLr 1151 (1233)
T KOG1824|consen 1123 LTFLMLARLADLCPSAVLQRLDRLVEPLR 1151 (1233)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 43444566666666544444555544433
No 57
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.42 E-value=2.3e-05 Score=73.00 Aligned_cols=180 Identities=18% Similarity=0.248 Sum_probs=127.1
Q ss_pred HHhhcC-CCChHHHHHHHHHHHHHHh--hcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHH
Q 011744 86 LQRCLK-DDDPYVRKTAAICVAKLYD--INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (478)
Q Consensus 86 i~~~l~-~~~~~VRk~A~~al~~i~~--~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~ 162 (478)
+..+|. +++|+++.+|..++++... .+.+.+.+.+-++.+..++++++|.|+..|+.++..++... +....+...
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~--en~~~Ik~~ 94 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND--ENQEQIKMY 94 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh--hhHHHHHHH
Confidence 666666 4789999999999988643 23355555677899999999999999999999988765432 112223334
Q ss_pred HHHHHHhccc--CChhhHHHHHHHHhhccCCCh--HHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHH
Q 011744 163 LSKLLTALNE--CTEWGQVFILDALSRYKAADA--REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNL 238 (478)
Q Consensus 163 ~~~Ll~~l~~--~~~~~q~~ll~~l~~~~~~~~--~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~ 238 (478)
+.++++.... .+...|...|++|......+. ......+..+..++.+.+..+...+.+++..++ .+|...+.+
T Consensus 95 i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS---~np~~~~~L 171 (254)
T PF04826_consen 95 IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS---ENPDMTREL 171 (254)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc---cCHHHHHHH
Confidence 5566664332 356788899999998864431 223356777778888999999999999999875 477776665
Q ss_pred HH-HhhhHHHHhhcC--ChhHHHHHHHHHHHHHhh
Q 011744 239 CK-KMAPPLVTLLSA--EPEIQYVALRNINLIVQR 270 (478)
Q Consensus 239 ~~-~~~~~l~~ll~~--~~~ir~~aL~~l~~l~~~ 270 (478)
+. ++...+..++++ +.++-..++..+..+...
T Consensus 172 l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 172 LSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 44 455567777763 456777788888888654
No 58
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=0.00042 Score=70.20 Aligned_cols=327 Identities=16% Similarity=0.166 Sum_probs=204.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhcCCCh---hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc-cccccccH
Q 011744 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGF 121 (478)
Q Consensus 46 l~in~l~kdL~~~n~~vr~~AL~~l~~i~~---~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p-~~~~~~~~ 121 (478)
-++..+...++-+.+.+|..-...+..... ..-...+.+.+.+++.....-=|+.|+.++..+.+..+ +...+.++
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~ 175 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGF 175 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhH
Confidence 345566777788888888777776665431 22334566778888888888899999999998887654 33334478
Q ss_pred HHHHHHhhcCCChhhHH-HHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHH---HHHHHhhccCCChHHHH
Q 011744 122 LESLKDLISDNNPMVVA-NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF---ILDALSRYKAADAREAE 197 (478)
Q Consensus 122 ~~~l~~lL~d~~~~V~~-~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~---ll~~l~~~~~~~~~~~~ 197 (478)
+..+.....|+.+.-+. .+..+........+...-..+.+.++.++....+..+-.+-. ..+.+....+. .-..
T Consensus 176 l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~--~aVK 253 (569)
T KOG1242|consen 176 LDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA--YAVK 253 (569)
T ss_pred HHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc--chhh
Confidence 89999999998877655 344444333333333333345566777777665554444332 22222221111 1112
Q ss_pred HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhh--Cccc
Q 011744 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQR--RPTI 274 (478)
Q Consensus 198 ~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~--~~~~ 274 (478)
.++..++.-+....|.-...++..++.+.. ..|..+......++|.+...+. +.+++|-.+..+|.+++.. +|+
T Consensus 254 ~llpsll~~l~~~kWrtK~aslellg~m~~--~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d- 330 (569)
T KOG1242|consen 254 LLLPSLLGSLLEAKWRTKMASLELLGAMAD--CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD- 330 (569)
T ss_pred HhhhhhHHHHHHHhhhhHHHHHHHHHHHHH--hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-
Confidence 344444433333344333333333333222 1345556566788888887774 7999999999999999876 343
Q ss_pred hhhcccee-eeccCCChhHHHHHHHHHHHh-----cCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcc--hhhH
Q 011744 275 LAHEIKVF-FCKYNDPIYVKMEKLEIMIKL-----ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL--ERAA 346 (478)
Q Consensus 275 ~~~~~~~~-~~l~~dd~~ir~~al~lL~~l-----~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~--~~~~ 346 (478)
++++++.+ .|+.++..++. .+++.|+.. +++.+...+++-|..=+.+.+...++.++.-++..+... +.+.
T Consensus 331 I~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~l 409 (569)
T KOG1242|consen 331 IQKIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDL 409 (569)
T ss_pred HHHHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHH
Confidence 77777744 45544432332 567777653 366677788888887788888889999988888877665 3444
Q ss_pred HHHHHHHHHH----hcccchhHHHHHHHHHHHHHhh
Q 011744 347 ERCISVLLEL----IKIKVNYVVQEAIIVIKDIFRR 378 (478)
Q Consensus 347 ~~~i~~ll~l----l~~~~~~v~~~~~~~l~~i~~~ 378 (478)
..|++.++.- +.+..+.++..+...++.++++
T Consensus 410 apfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 410 APFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred hhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 4454444443 4445677888888888877754
No 59
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=2.1e-05 Score=81.16 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=122.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHH-HhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 011744 48 VNTFVKDSQDPNPLIRALAVR-TMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~-~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 126 (478)
+..+++++.+.-+.-|..|++ .++.+....-+-.+.|++.++....+--.+|-..+-+.......|+... .+++.+.
T Consensus 15 i~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~--~avnt~~ 92 (734)
T KOG1061|consen 15 IPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI--LAVNTFL 92 (734)
T ss_pred chHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH--hhhhhhh
Confidence 455667776655566666665 7888765555668899999999998988888888888888888888655 3556666
Q ss_pred HhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChH--HHHHHHHHhh
Q 011744 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR--EAENIVERVT 204 (478)
Q Consensus 127 ~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~--~~~~~l~~l~ 204 (478)
+=..|++|.++..|+..++.+.-. ......+..+.+.+.+.+|+.+..+--...++...+.+ ....+++.+.
T Consensus 93 kD~~d~np~iR~lAlrtm~~l~v~------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~ 166 (734)
T KOG1061|consen 93 KDCEDPNPLIRALALRTMGCLRVD------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALK 166 (734)
T ss_pred ccCCCCCHHHHHHHhhceeeEeeh------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHH
Confidence 556789999999998877665321 12334667788888888898876654444444322221 2234778888
Q ss_pred hhhcCCChHHHHHHHHHHHHhhh
Q 011744 205 PRLQHANCAVVLSAVKMILQQME 227 (478)
Q Consensus 205 ~~l~~~~~~V~~ea~~~i~~~~~ 227 (478)
.++.++++.|+-.|..++..+.+
T Consensus 167 ~ll~D~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 167 DLLSDSNPMVVANALAALSEIHE 189 (734)
T ss_pred HHhcCCCchHHHHHHHHHHHHHH
Confidence 88889999999999999887654
No 60
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.39 E-value=5.8e-06 Score=73.27 Aligned_cols=157 Identities=11% Similarity=0.172 Sum_probs=106.8
Q ss_pred ChhHHHHHHHHHHHHHhhCccchhhcccee-eeccCCChhHHHHHHHHHHHhcCcccH--H-HHHHHHHHhhhhcCHHHH
Q 011744 253 EPEIQYVALRNINLIVQRRPTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRNI--D-QVLLEFKEYATEVDVDFV 328 (478)
Q Consensus 253 ~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~-~~l~~dd~~ir~~al~lL~~l~~~~n~--~-~Iv~~L~~~l~~~d~~~r 328 (478)
+|.+|-.++.+++.++.++|+.+.++.+.+ .++.++++.||+.|+.+|..|..++-+ + .++.+++..+.|+|+++|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 578999999999999999999999998854 577888899999999999998866543 3 455888888899999999
Q ss_pred HHHHHHHHHHHhc-chhh-HHHHHHHHHHHhccc--------chhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCC
Q 011744 329 RKAVRAIGRCAIK-LERA-AERCISVLLELIKIK--------VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 398 (478)
Q Consensus 329 ~~~v~~i~~l~~~-~~~~-~~~~i~~ll~ll~~~--------~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~ 398 (478)
..+...+..+..+ .+.. ..-+.+.+..+-... +..-+..+...+.+.+.+ ++..+.+++++++.+....
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHc
Confidence 9999999988887 4433 333344444332221 112234444555444433 3455666777766554332
Q ss_pred ---hhhHHHHHHHHh
Q 011744 399 ---EPEAKASMIWII 410 (478)
Q Consensus 399 ---~~~~~~~~~~il 410 (478)
++.+.+-+++++
T Consensus 160 ~~~~~~~~~d~~~~l 174 (178)
T PF12717_consen 160 VDEDERVLRDILYCL 174 (178)
T ss_pred ccccHHHHHHHHHHH
Confidence 344455555554
No 61
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.38 E-value=0.00086 Score=74.01 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=99.1
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCCCh--hhh--hHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHH
Q 011744 49 NTFVKDSQDPNPLIRALAVRTMGCIRV--DKI--TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (478)
Q Consensus 49 n~l~kdL~~~n~~vr~~AL~~l~~i~~--~e~--~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~ 124 (478)
+.+..-+..+-+.+|.-|+++++.|.. |.+ -+.+-..|..-+.|++..||-+|+.-+++..-.+|+.++ ++.+.
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~--qyY~~ 896 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF--QYYDQ 896 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH--HHHHH
Confidence 445566778889999999999998852 322 123445578888899999999999999999999999987 68899
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCCh
Q 011744 125 LKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTE 175 (478)
Q Consensus 125 l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 175 (478)
+..-+.|...+||.-++..+.+|+...+. +..+..+..+++..++|...
T Consensus 897 i~erIlDtgvsVRKRvIKIlrdic~e~pd--f~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 897 IIERILDTGVSVRKRVIKILRDICEETPD--FSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhCCC--hhhHHHHHHHHHHHhccchh
Confidence 99999999999999999999999998764 66666677778877765433
No 62
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0057 Score=63.38 Aligned_cols=404 Identities=17% Similarity=0.200 Sum_probs=229.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh-ccc-ccccccHHHHHHH
Q 011744 50 TFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAE-LVEDRGFLESLKD 127 (478)
Q Consensus 50 ~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~-~p~-~~~~~~~~~~l~~ 127 (478)
.|++.|.+++|..+.-=.+-.=. -++|.-+.+-..+...|.++.|..+..|+.|+..|... -|. ..+ +++..+..
T Consensus 60 ~LKN~L~akd~~~k~~~~qRWl~-l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp--~li~~lv~ 136 (859)
T KOG1241|consen 60 QLKNSLTAKDPERKQQYQQRWLQ-LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWP--ELIVTLVS 136 (859)
T ss_pred HHhhhhccCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCH--HHHHHHHH
Confidence 44455555555433222211111 23566677888899999999999999999999999873 232 222 34455555
Q ss_pred hhcCCChh-hHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcc------cCChhhHHHHHHHHh--------hccCCC
Q 011744 128 LISDNNPM-VVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN------ECTEWGQVFILDALS--------RYKAAD 192 (478)
Q Consensus 128 lL~d~~~~-V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~------~~~~~~q~~ll~~l~--------~~~~~~ 192 (478)
-..+..+. ++.+++.+++.|+++-.+. ........++..+. +++.-.....++.|- .|. .
T Consensus 137 nv~~~~~~~~k~~slealGyice~i~pe---vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~--~ 211 (859)
T KOG1241|consen 137 NVGEEQASMVKESSLEALGYICEDIDPE---VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFN--N 211 (859)
T ss_pred hcccccchHHHHHHHHHHHHHHccCCHH---HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhc--c
Confidence 44555544 8999999999999876432 11122233333321 223333333333332 222 2
Q ss_pred hHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHH-hhh-HHHHhhcCChhHHHHHHHHHHHHHhh
Q 011744 193 AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKK-MAP-PLVTLLSAEPEIQYVALRNINLIVQR 270 (478)
Q Consensus 193 ~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~-~~~-~l~~ll~~~~~ir~~aL~~l~~l~~~ 270 (478)
+.+.+-+++.+....++++..|.-.|..++..+... .-+....++.. +.. .+..+-+.++++..-|.+-=+.++..
T Consensus 212 E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L--yY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE 289 (859)
T KOG1241|consen 212 EMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSL--YYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE 289 (859)
T ss_pred HhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 344455677777778888899998888887665320 11222222221 111 12233356777777777766655532
Q ss_pred Ccc-------chh----h-----------c-cceee---e-----ccCCChhHHHHHHHHH---HHhcCcccHHHHHHHH
Q 011744 271 RPT-------ILA----H-----------E-IKVFF---C-----KYNDPIYVKMEKLEIM---IKLASDRNIDQVLLEF 316 (478)
Q Consensus 271 ~~~-------~~~----~-----------~-~~~~~---~-----l~~dd~~ir~~al~lL---~~l~~~~n~~~Iv~~L 316 (478)
.-+ .+. | + ++.+. + -++||+++.+.|-..| ...+.++-+..+++.+
T Consensus 290 EiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fi 369 (859)
T KOG1241|consen 290 EIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFI 369 (859)
T ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHH
Confidence 111 000 0 1 12111 1 1244578877665444 3344555566677777
Q ss_pred HHhhhhcCHHHHHHHHHHHHHHHhcc-----hhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcch------HH
Q 011744 317 KEYATEVDVDFVRKAVRAIGRCAIKL-----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY------ES 385 (478)
Q Consensus 317 ~~~l~~~d~~~r~~~v~~i~~l~~~~-----~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~------~~ 385 (478)
.+.++.+|...|..++-+.|.+-+-= -+....-++.+++++.+..-.+++.+...++.+....|+.. ..
T Consensus 370 ee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~ 449 (859)
T KOG1241|consen 370 EENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQS 449 (859)
T ss_pred HHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence 67778899999998888887655431 12234557888888888777788877788888876655432 23
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHhhcccCccC-----C---------HHHHHHHHhhcCCC---CCHHHHHHHHHHHHH
Q 011744 386 IIATLCESLDTLDEPEAKASMIWIIGEYAERID-----N---------ADELLESFLESFPE---EPAQVQLQLLTATVK 448 (478)
Q Consensus 386 ~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~-----~---------~~~~l~~l~~~~~~---~~~~vk~~il~a~~K 448 (478)
.+..+++-+.+ .|.+-..++|.+--.++... + -++++..+++.=.. ....-|.+.-.|++-
T Consensus 450 ~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmE 527 (859)
T KOG1241|consen 450 KLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALME 527 (859)
T ss_pred HHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 45566666654 57787888888654442211 0 12344444332111 235667777777777
Q ss_pred HhccCCCcchHHHHHHHH
Q 011744 449 LFLKKPTEGPQQMIQVTL 466 (478)
Q Consensus 449 l~~~~~~~~~~~~~~~~l 466 (478)
+....|.+ ..++++++.
T Consensus 528 lIk~st~~-vy~~v~~~~ 544 (859)
T KOG1241|consen 528 LIKNSTDD-VYPMVQKLT 544 (859)
T ss_pred HHHcCcHH-HHHHHHHHH
Confidence 66555554 555555543
No 63
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.0037 Score=69.26 Aligned_cols=272 Identities=14% Similarity=0.184 Sum_probs=159.2
Q ss_pred CCCchhhHHHHHHhccCCChhHHHHHHHHHH---HhcccCchHHHH---HHHHHHhhcCCCCHHHHHHHHHHhcCC---C
Q 011744 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLI---NYAKSQPDLAIL---AVNTFVKDSQDPNPLIRALAVRTMGCI---R 74 (478)
Q Consensus 4 G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~---~~~~~~~e~~~l---~in~l~kdL~~~n~~vr~~AL~~l~~i---~ 74 (478)
|.+..+..-....+..|+|+..|+.+.+-+- ++....|+.... +-..+..-|.++|++++-.|-+-+|-+ +
T Consensus 813 ~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelg 892 (1702)
T KOG0915|consen 813 DTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELG 892 (1702)
T ss_pred CccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecC
Confidence 3444556667777899999999999876443 344444554221 114556777889999999999877732 2
Q ss_pred hh----hhhH-----------------------------------------------------HHHHHHHhhcCC-CChH
Q 011744 75 VD----KITE-----------------------------------------------------YLCDPLQRCLKD-DDPY 96 (478)
Q Consensus 75 ~~----e~~~-----------------------------------------------------~l~~~i~~~l~~-~~~~ 96 (478)
+. ++++ .++....++.+| ..+.
T Consensus 893 d~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wn 972 (1702)
T KOG0915|consen 893 DSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWN 972 (1702)
T ss_pred CchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhh
Confidence 11 1221 144445666666 5567
Q ss_pred HHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCccc-ccHHHHHHHHHhcccC
Q 011744 97 VRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNEC 173 (478)
Q Consensus 97 VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~-~~~~~~~~Ll~~l~~~ 173 (478)
=||=|+.++..|.....+..++ ..++|.|.+.=-|+|+.|+.+-.+....+..+.. ...+ .+..+++.|+..+ .+
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k-~~vd~y~neIl~eLL~~l-t~ 1050 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSK-KVVDEYLNEILDELLVNL-TS 1050 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHhc-cc
Confidence 7888999999888776554442 1455666666679999999999988888766531 1111 2234555555544 35
Q ss_pred ChhhHH-----HHHHHHhhccCCChHHHHH---HHHHhhhhhcCCChHHHHHHHH---HHHHhh----hhcCChHHHHHH
Q 011744 174 TEWGQV-----FILDALSRYKAADAREAEN---IVERVTPRLQHANCAVVLSAVK---MILQQM----ELITSTDVVRNL 238 (478)
Q Consensus 174 ~~~~q~-----~ll~~l~~~~~~~~~~~~~---~l~~l~~~l~~~~~~V~~ea~~---~i~~~~----~~~~~~~~~~~~ 238 (478)
.+|-.- .+.++|+. +..++..+. +...+..-..+.-.+||-.|-+ ++..+. +. .++..-+++
T Consensus 1051 kewRVReasclAL~dLl~g--~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~-~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQG--RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV-TNGAKGKEA 1127 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-CCcccHHHH
Confidence 677532 24444443 112222222 2222222223333466644422 222221 11 122222334
Q ss_pred HHHhhhHHH--HhhcCChhHHHHHHHHHHHHHhhCccchhhccc
Q 011744 239 CKKMAPPLV--TLLSAEPEIQYVALRNINLIVQRRPTILAHEIK 280 (478)
Q Consensus 239 ~~~~~~~l~--~ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~ 280 (478)
+..+.|.+. ..+++-+++|.+++.++..++...+..+.||..
T Consensus 1128 l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~ 1171 (1702)
T KOG0915|consen 1128 LDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP 1171 (1702)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh
Confidence 445555332 123455899999999999999999988888865
No 64
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=0.00017 Score=76.42 Aligned_cols=325 Identities=14% Similarity=0.149 Sum_probs=191.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhcC----CChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccc
Q 011744 44 AILAVNTFVKDSQDPNPLIRALAVRTMGC----IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDR 119 (478)
Q Consensus 44 ~~l~in~l~kdL~~~n~~vr~~AL~~l~~----i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~ 119 (478)
..-.++.+.+.+ +.+..+...+---++. ++.+++...+.+.+..++.+...-||++|+.++.++....|+.-...
T Consensus 119 r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~ 197 (759)
T KOG0211|consen 119 RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLRE 197 (759)
T ss_pred hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 344567777777 4444444444444444 46889999999999999999999999999999999887655321111
Q ss_pred ---------------------------------------cHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCC-Cccccc
Q 011744 120 ---------------------------------------GFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEIT 159 (478)
Q Consensus 120 ---------------------------------------~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~-~~~~~~ 159 (478)
...+...++..|.+|+|+.++..-++.+++.... ...+..
T Consensus 198 ~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v 277 (759)
T KOG0211|consen 198 HLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEV 277 (759)
T ss_pred HHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhc
Confidence 2223334456677788888777777776654322 112222
Q ss_pred HHHHHHHHHhcccCChhhHHH-----HHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHH
Q 011744 160 SHTLSKLLTALNECTEWGQVF-----ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV 234 (478)
Q Consensus 160 ~~~~~~Ll~~l~~~~~~~q~~-----ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~ 234 (478)
.+.+..|.. |+-.+++ -+-.+..+...+.+....+.+.+.....+.++.|++-.+.....+...++. +.
T Consensus 278 ~~~~~~L~~-----DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~-~~ 351 (759)
T KOG0211|consen 278 LPTLIQLLR-----DDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP-SA 351 (759)
T ss_pred cHHHhhhhh-----cchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc-cc
Confidence 233333332 2222222 122222222222244456777777788888999999998888776543332 22
Q ss_pred HHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhC-----ccchhhcc-ceeeec-cCCChhHHHHHHHHHHHh---
Q 011744 235 VRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR-----PTILAHEI-KVFFCK-YNDPIYVKMEKLEIMIKL--- 303 (478)
Q Consensus 235 ~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~-----~~~~~~~~-~~~~~l-~~dd~~ir~~al~lL~~l--- 303 (478)
.+. ...++...+++ ...+.|+++-....++...- +++...++ +.++.+ .+....+|.........+
T Consensus 352 ~~~---~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~ 428 (759)
T KOG0211|consen 352 TRT---QLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPI 428 (759)
T ss_pred Ccc---cchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCcc
Confidence 210 22344455555 45678888888877776542 44444443 322222 233466766655554443
Q ss_pred -cCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcc-----hhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 011744 304 -ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL-----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (478)
Q Consensus 304 -~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~-----~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~ 377 (478)
..++++..+.+.++..+++.++++|.+++..+..+-.-. ....+..+..+..+-.+..+.++.++++.+..+..
T Consensus 429 ~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 429 LPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred CCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 356667777777777888888888888886553332221 11233444455555555566777777777766654
Q ss_pred h
Q 011744 378 R 378 (478)
Q Consensus 378 ~ 378 (478)
.
T Consensus 509 q 509 (759)
T KOG0211|consen 509 Q 509 (759)
T ss_pred h
Confidence 3
No 65
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.00026 Score=70.62 Aligned_cols=357 Identities=12% Similarity=0.160 Sum_probs=197.8
Q ss_pred cCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC-CChHHHHHHHHHHHHHH-hhcccc--------------ccc
Q 011744 55 SQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLY-DINAEL--------------VED 118 (478)
Q Consensus 55 L~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~-~~~p~~--------------~~~ 118 (478)
.-+++|-+|..|-.-|-+..+.++.+...-.+..+..+ ++++.|-.|.+++-+-. ..+|+. ..+
T Consensus 14 vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~ 93 (858)
T COG5215 14 VLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKE 93 (858)
T ss_pred cCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHH
Confidence 34566666666666666666666555544444444433 56677777777665432 233321 110
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC-CCCcccccHHHHHHHHHhcccCCh-hhHHHHHHHHhhccCCC-hHH
Q 011744 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENS-SRPIFEITSHTLSKLLTALNECTE-WGQVFILDALSRYKAAD-ARE 195 (478)
Q Consensus 119 ~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~-~~~~~~~~~~~~~~Ll~~l~~~~~-~~q~~ll~~l~~~~~~~-~~~ 195 (478)
.......+.|..+.|..-..|..++..|+.-. +...|. +.+..+....-+..| -+...-+..++..+... ++.
T Consensus 94 -qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp---~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~ 169 (858)
T COG5215 94 -QVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWP---GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPED 169 (858)
T ss_pred -HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccch---HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHH
Confidence 23344456788888888888888888887643 323342 222233332222222 34555677777766433 323
Q ss_pred HHH----HHHHhh--hhhcCCChHHHHHHHHHHHHhhhhcC---ChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHH
Q 011744 196 AEN----IVERVT--PRLQHANCAVVLSAVKMILQQMELIT---STDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNIN 265 (478)
Q Consensus 196 ~~~----~l~~l~--~~l~~~~~~V~~ea~~~i~~~~~~~~---~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~ 265 (478)
... ++-.+. ++-+.++.+|++.|.++++.-..++. ..+.-+.+ +.+..+..-. .|.+++..|.-++.
T Consensus 170 li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy---~mqvvceatq~~d~e~q~aafgCl~ 246 (858)
T COG5215 170 LIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNY---FMQVVCEATQGNDEELQHAAFGCLN 246 (858)
T ss_pred HHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhch---hheeeehhccCCcHHHHHHHHHHHH
Confidence 222 222222 12234678999999999877221110 11111111 1111123333 57889999999999
Q ss_pred HHHhhCccchhhccc-eee-----eccCCChhHHHHHHHHHHHhcCccc-----------------------HHHHHHHH
Q 011744 266 LIVQRRPTILAHEIK-VFF-----CKYNDPIYVKMEKLEIMIKLASDRN-----------------------IDQVLLEF 316 (478)
Q Consensus 266 ~l~~~~~~~~~~~~~-~~~-----~l~~dd~~ir~~al~lL~~l~~~~n-----------------------~~~Iv~~L 316 (478)
++...+-++.+++.+ .++ ..++....|+..|++....+|.+++ +.+++|+|
T Consensus 247 kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l 326 (858)
T COG5215 247 KIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL 326 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence 999887666665543 111 1245556788899999988886653 55678888
Q ss_pred HHhhhh--cC-----HHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhh-CCcchHHHH
Q 011744 317 KEYATE--VD-----VDFVRKAVRAIGRCAIKL-ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR-YPNTYESII 387 (478)
Q Consensus 317 ~~~l~~--~d-----~~~r~~~v~~i~~l~~~~-~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~-~~~~~~~~i 387 (478)
+..+.. +| ......+-.++--.++.. .+..+..+.++-+-++..++.-++.++..++.++.. ..+...+++
T Consensus 327 L~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V 406 (858)
T COG5215 327 LSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV 406 (858)
T ss_pred HHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH
Confidence 877643 11 122222222222112111 111223344444556667888888889999988754 234556777
Q ss_pred HHHHhhcCCC-Chhh--HHHHHHHHhhcccCccC
Q 011744 388 ATLCESLDTL-DEPE--AKASMIWIIGEYAERID 418 (478)
Q Consensus 388 ~~L~~~l~~~-~~~~--~~~~~~~ilGE~~~~~~ 418 (478)
...+.-+... .|+. ++.+.+|++|..++.++
T Consensus 407 ~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 407 PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence 7666544321 2443 58999999999887654
No 66
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0018 Score=65.90 Aligned_cols=258 Identities=14% Similarity=0.142 Sum_probs=170.8
Q ss_pred HHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCcc-
Q 011744 196 AENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT- 273 (478)
Q Consensus 196 ~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~- 273 (478)
.+.....+..+..+.++.|+-.|+..++.+.+.+ .+- +.+-+...++++ ++..+|.+|++.+...++.+|-
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLS----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---ccc----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344555666778889999999999999875421 111 123334457777 4678999999999999998852
Q ss_pred --chhh---ccc-eee--e--ccCCChhHHHHHHHHHHHhcCcccHHHHHHHHH--Hhhh--------------------
Q 011744 274 --ILAH---EIK-VFF--C--KYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFK--EYAT-------------------- 321 (478)
Q Consensus 274 --~~~~---~~~-~~~--~--l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~--~~l~-------------------- 321 (478)
...+ +.. .|. | ..+-...||-.|.+.|..+.+- -+.++.+.+ +.++
T Consensus 269 ~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v--See~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Ge 346 (823)
T KOG2259|consen 269 LERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV--SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGE 346 (823)
T ss_pred ccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh--HHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCC
Confidence 1111 111 231 2 2344578888888888766432 122222222 1111
Q ss_pred -------------------------------------hcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhH
Q 011744 322 -------------------------------------EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYV 364 (478)
Q Consensus 322 -------------------------------------~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v 364 (478)
|+-.++|+.+|..++.++..-|......+|.+.+++.+.-..|
T Consensus 347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVV 426 (823)
T ss_pred cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHH
Confidence 1126899999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCCH-HHHHHHHhh---cCCCCCHHHHH
Q 011744 365 VQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA-DELLESFLE---SFPEEPAQVQL 440 (478)
Q Consensus 365 ~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~~-~~~l~~l~~---~~~~~~~~vk~ 440 (478)
+..++..+..+..+ -..++..+..+.+.|++- .++++.++--+++----...++ .-++..+.. +|++. |-
T Consensus 427 RL~ai~aL~~Is~~-l~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqD----rd 500 (823)
T KOG2259|consen 427 RLKAIFALTMISVH-LAIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQD----RD 500 (823)
T ss_pred HHHHHHHHHHHHHH-heecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCC----cH
Confidence 99999999988755 567788888888888875 5778888877776532111111 122233332 34433 44
Q ss_pred HHHHHHHHHhccCCCcchHHHHHHHHHHH
Q 011744 441 QLLTATVKLFLKKPTEGPQQMIQVTLKYY 469 (478)
Q Consensus 441 ~il~a~~Kl~~~~~~~~~~~~~~~~l~~~ 469 (478)
.|+.++.|+..+.+-- ...+++..+..+
T Consensus 501 ~i~~cm~~iGqnH~~l-v~s~m~rfl~kh 528 (823)
T KOG2259|consen 501 EILRCMGRIGQNHRRL-VLSNMGRFLEKH 528 (823)
T ss_pred HHHHHHHHHhccChhh-HHHHHHHHHHhc
Confidence 5688888888776653 566666665443
No 67
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.16 E-value=0.0014 Score=69.54 Aligned_cols=325 Identities=14% Similarity=0.158 Sum_probs=173.0
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccC--ch-H-HHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC-hhhhhH----
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQ--PD-L-AILAVNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITE---- 80 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~--~e-~-~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~-~~e~~~---- 80 (478)
++...++++.+++.+..-++.-++..+.-.. .+ . ..=++..|.+-+.++|+..+..|++.|.|+. +++..+
T Consensus 291 iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~ 370 (708)
T PF05804_consen 291 IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVS 370 (708)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4456778888999888887777777765332 11 1 1114678899999999999999999999986 333332
Q ss_pred -HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhc--ccccccccHHHHHHHh-hcCCChhhHHHHHHHHHHHhhhCCCCcc
Q 011744 81 -YLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN--AELVEDRGFLESLKDL-ISDNNPMVVANAVAALAEIEENSSRPIF 156 (478)
Q Consensus 81 -~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~l-L~d~~~~V~~~a~~~l~~i~~~~~~~~~ 156 (478)
.++|.+..++.+++ .|..|...++++.... ...+...+.+|.+.++ +..+++.+...++.++..++....-...
T Consensus 371 ~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaql 448 (708)
T PF05804_consen 371 LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQL 448 (708)
T ss_pred CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHH
Confidence 36788888887643 4555666666665422 2223333567887775 4556666665555555555433210000
Q ss_pred cccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcC-CChHHHHHHHHHHHHhhhhcCChHHH
Q 011744 157 EITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQH-ANCAVVLSAVKMILQQMELITSTDVV 235 (478)
Q Consensus 157 ~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~-~~~~V~~ea~~~i~~~~~~~~~~~~~ 235 (478)
-.-.+.++.|++.......-.-++++|-++...+.......+++..+...+.+ .++....||+.++.++. +++.+..
T Consensus 449 m~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~--~~~ld~~ 526 (708)
T PF05804_consen 449 MCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLT--IPDLDWA 526 (708)
T ss_pred HHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc--cCCcCHH
Confidence 00002234444432111112222344444443322112222445555555544 46789999999998874 1222222
Q ss_pred HHHHH-HhhhHHHHhhc---CChhHHHHHHHHHHHHHhhCccc---h------hhccceeeeccCCChhHHHHHHHHHHH
Q 011744 236 RNLCK-KMAPPLVTLLS---AEPEIQYVALRNINLIVQRRPTI---L------AHEIKVFFCKYNDPIYVKMEKLEIMIK 302 (478)
Q Consensus 236 ~~~~~-~~~~~l~~ll~---~~~~ir~~aL~~l~~l~~~~~~~---~------~~~~~~~~~l~~dd~~ir~~al~lL~~ 302 (478)
+-+-+ .+++-+..++. .++++.-.+...++.++. +|+. + ...+..+.. +.+|..+-...+-+.+.
T Consensus 527 ~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~-kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 527 QLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNA-KQEDDEIVLQILYVFYQ 604 (708)
T ss_pred HHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHh-hCchHHHHHHHHHHHHH
Confidence 21212 56777777774 345666666666666654 2221 1 111112221 23333444445555555
Q ss_pred hc-CcccHHHH------HHHHHHhhhhcCHHHHHHHHHHHHHHHh
Q 011744 303 LA-SDRNIDQV------LLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (478)
Q Consensus 303 l~-~~~n~~~I------v~~L~~~l~~~d~~~r~~~v~~i~~l~~ 340 (478)
+. .+++.+.+ +..|++.++|.+.++|+-+=.++..+++
T Consensus 605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 43 33443333 3345555666666666655555555554
No 68
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.13 E-value=0.00065 Score=67.66 Aligned_cols=283 Identities=16% Similarity=0.137 Sum_probs=163.1
Q ss_pred HHHHHHhcccCChhhHHHHHHHHhhccCC---C--hHHHHHHHHHhhhhhcCC-ChHHHHHHHHHHHHhhhhcCChHHHH
Q 011744 163 LSKLLTALNECTEWGQVFILDALSRYKAA---D--AREAENIVERVTPRLQHA-NCAVVLSAVKMILQQMELITSTDVVR 236 (478)
Q Consensus 163 ~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~---~--~~~~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~~~~~~~~~~~~~ 236 (478)
+..++..+...+.+.+....++++.+... . ......+.+.+...+++. +..-..-|++++..+. ..++.-.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL---~~~~~R~ 179 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL---RVDEYRF 179 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh---CCchHHH
Confidence 34445555566777888777777765422 1 112223445555666543 2344444455554442 2333332
Q ss_pred HHHH-HhhhHHHHhhcC---ChhHHHHHHHHHHHHHhhCc--cchhhc--ccee-eeccCCC-hhHHHHHHHHHHHhcCc
Q 011744 237 NLCK-KMAPPLVTLLSA---EPEIQYVALRNINLIVQRRP--TILAHE--IKVF-FCKYNDP-IYVKMEKLEIMIKLASD 306 (478)
Q Consensus 237 ~~~~-~~~~~l~~ll~~---~~~ir~~aL~~l~~l~~~~~--~~~~~~--~~~~-~~l~~dd-~~ir~~al~lL~~l~~~ 306 (478)
.+.+ +.++.|..++++ +..+.|-++-++..++-..+ +....+ ++.+ ..+.... ..|-|.++.++.++.+.
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 2222 456677788864 45789999999998876432 111111 1111 1222222 55777788888888764
Q ss_pred c--------cHHHHHH-HHHHhh------hhcCHHHHHHHHHHHHHHHhcch--hhHHHHHHHH-HHHhcccchhHHHHH
Q 011744 307 R--------NIDQVLL-EFKEYA------TEVDVDFVRKAVRAIGRCAIKLE--RAAERCISVL-LELIKIKVNYVVQEA 368 (478)
Q Consensus 307 ~--------n~~~Iv~-~L~~~l------~~~d~~~r~~~v~~i~~l~~~~~--~~~~~~i~~l-l~ll~~~~~~v~~~~ 368 (478)
. ....+|. .+...+ +-.|+|+..++-.--..+.+.+. ...+.|..-+ ...|+-+..+-.+.+
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~F 339 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKF 339 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchH
Confidence 3 1122333 222222 23678887665433333443332 2234444333 333444444556677
Q ss_pred HH-HHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCCHHHHHHH------HhhcCCCCCHHHHHH
Q 011744 369 II-VIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLES------FLESFPEEPAQVQLQ 441 (478)
Q Consensus 369 ~~-~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~~~~~l~~------l~~~~~~~~~~vk~~ 441 (478)
|. ...++-.+ .-.++..|.+.|+.-++|.+.+.++.=+|||....+....+++. +++-...++++||..
T Consensus 340 W~EN~~kf~~~----~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~e 415 (429)
T cd00256 340 WRENADRLNEK----NYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYE 415 (429)
T ss_pred HHHHHHHHHhc----chHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence 75 44444322 13578889998876678888999999999999998877666654 344456789999999
Q ss_pred HHHHHHHHhcc
Q 011744 442 LLTATVKLFLK 452 (478)
Q Consensus 442 il~a~~Kl~~~ 452 (478)
.|.|.-|+...
T Consensus 416 AL~avQklm~~ 426 (429)
T cd00256 416 ALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHHHHh
Confidence 99999999653
No 69
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.018 Score=59.26 Aligned_cols=329 Identities=14% Similarity=0.170 Sum_probs=188.7
Q ss_pred HHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC--CChhhHH
Q 011744 61 LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD--NNPMVVA 138 (478)
Q Consensus 61 ~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d--~~~~V~~ 138 (478)
.+-=+++..|-+ .+.++...++..|++-+.+.+|.--.-|..|+..+.... ..+ .+.+.+.++|-. ..+.|+.
T Consensus 92 qIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re--~~e--a~~~DI~KlLvS~~~~~~vkq 166 (938)
T KOG1077|consen 92 QIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSRE--MAE--AFADDIPKLLVSGSSMDYVKQ 166 (938)
T ss_pred HHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHh--HHH--HhhhhhHHHHhCCcchHHHHH
Confidence 333444444433 346788888999999999999988889999999887542 222 344666676643 4466777
Q ss_pred HHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhh----HHHHHHHHhhccCCChHHHHHHHHH----hhh-----
Q 011744 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG----QVFILDALSRYKAADAREAENIVER----VTP----- 205 (478)
Q Consensus 139 ~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~----q~~ll~~l~~~~~~~~~~~~~~l~~----l~~----- 205 (478)
.|+.++..+.+.+++- +.. ..-+.+++..|.+.+ .+ ...++.++.++.|++ ....+.. +..
T Consensus 167 kaALclL~L~r~spDl-~~~-~~W~~riv~LL~D~~-~gv~ta~~sLi~~lvk~~p~~---yk~~~~~avs~L~riv~~~ 240 (938)
T KOG1077|consen 167 KAALCLLRLFRKSPDL-VNP-GEWAQRIVHLLDDQH-MGVVTAATSLIEALVKKNPES---YKTCLPLAVSRLSRIVVVV 240 (938)
T ss_pred HHHHHHHHHHhcCccc-cCh-hhHHHHHHHHhCccc-cceeeehHHHHHHHHHcCCHH---HhhhHHHHHHHHHHHHhhc
Confidence 7777777777766431 100 012345555554433 21 233566666554432 1111111 111
Q ss_pred --hh------cCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhcC-----------ChhHHHHHHHHHHH
Q 011744 206 --RL------QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-----------EPEIQYVALRNINL 266 (478)
Q Consensus 206 --~l------~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----------~~~ir~~aL~~l~~ 266 (478)
-+ .-++|=.....++++..+ |..+++.... +....+-++|++ ..|.+-++|--...
T Consensus 241 ~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~----~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~ 315 (938)
T KOG1077|consen 241 GTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRA----RLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAIS 315 (938)
T ss_pred ccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHH----HHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHH
Confidence 00 013455555666666554 4333443332 233344455531 12555555533333
Q ss_pred HH-hhC--ccchhhcccee-eeccCCChhHHHHHHHHHHHhcCcccHHHHH----HHHHHhhh-hcCHHHHHHHHHHHHH
Q 011744 267 IV-QRR--PTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRNIDQVL----LEFKEYAT-EVDVDFVRKAVRAIGR 337 (478)
Q Consensus 267 l~-~~~--~~~~~~~~~~~-~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv----~~L~~~l~-~~d~~~r~~~v~~i~~ 337 (478)
++ ..+ |+.+......+ ..+.+....||-.|++.+..|+..+-..+.| +.++.-++ +.|..+|+.++..++-
T Consensus 316 l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~ 395 (938)
T KOG1077|consen 316 LAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYA 395 (938)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 33 323 45555443322 1134555789999999999998665433333 33444555 6789999999999988
Q ss_pred HHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCC-cc--hHHHHHHHHhhcCCCChhhHHHHHH
Q 011744 338 CAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP-NT--YESIIATLCESLDTLDEPEAKASMI 407 (478)
Q Consensus 338 l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~-~~--~~~~i~~L~~~l~~~~~~~~~~~~~ 407 (478)
.+.. ++.+.+++-+++-+..++..+++|++.-+.-+.+++. +. +..++-+|+..-.+..++++-..++
T Consensus 396 mcD~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~Rvv 466 (938)
T KOG1077|consen 396 MCDV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVV 466 (938)
T ss_pred Hhch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhh
Confidence 8876 6788999999999999999999998876666655543 22 2233444444334444555533333
No 70
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.05 E-value=0.00027 Score=65.88 Aligned_cols=174 Identities=15% Similarity=0.182 Sum_probs=119.4
Q ss_pred HHHhhcC-CCCHHHHHHHHHHhcCCChh----hhhHH--HHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc--ccccccc
Q 011744 50 TFVKDSQ-DPNPLIRALAVRTMGCIRVD----KITEY--LCDPLQRCLKDDDPYVRKTAAICVAKLYDINA--ELVEDRG 120 (478)
Q Consensus 50 ~l~kdL~-~~n~~vr~~AL~~l~~i~~~----e~~~~--l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p--~~~~~~~ 120 (478)
.+..-|+ +++|.++..|+.++++...- +++.. .++.|.+.+.+++|.||.+|..|+..+.-..+ ..+. .
T Consensus 16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik--~ 93 (254)
T PF04826_consen 16 KLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK--M 93 (254)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH--H
Confidence 3334455 56899999999999998643 33332 46779999999999999999999998754333 2333 3
Q ss_pred HHHHHHH-hhcC-CChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHH
Q 011744 121 FLESLKD-LISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN 198 (478)
Q Consensus 121 ~~~~l~~-lL~d-~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~ 198 (478)
+++.+.+ ...+ .|..++.+++.+|..+.-.+ +....+.+.++.++..+...+.-.|...+++|..+... +....+
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~--~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~ 170 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN--DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRE 170 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHH
Confidence 4555544 3333 47789999999999885432 22344456777888878778888899999999988743 333333
Q ss_pred H-----HHHhhhhhcCC-ChHHHHHHHHHHHHhhhh
Q 011744 199 I-----VERVTPRLQHA-NCAVVLSAVKMILQQMEL 228 (478)
Q Consensus 199 ~-----l~~l~~~l~~~-~~~V~~ea~~~i~~~~~~ 228 (478)
+ +..+..+++.. +..++..++..+..+...
T Consensus 171 Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 171 LLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 3 33455555544 568888888877776443
No 71
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.01 E-value=0.0055 Score=62.01 Aligned_cols=437 Identities=13% Similarity=0.085 Sum_probs=241.1
Q ss_pred CCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCC--CCH-HHHHHHH------------
Q 011744 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQD--PNP-LIRALAV------------ 67 (478)
Q Consensus 3 ~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~--~n~-~vr~~AL------------ 67 (478)
.||+.....--+.+.+.|++-+.|+...+....+..-+.+-. -.++.+..- -.| ..|..|.
T Consensus 435 a~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp----~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~tt 510 (975)
T COG5181 435 ACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTP----WKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTT 510 (975)
T ss_pred hhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCH----HHHHHhhcHHhhchHHHhhhcccccccceeehhH
Confidence 466666666666678999999999999999888766543210 011111110 011 1222232
Q ss_pred HHhcCC-ChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc-ccc---ccHHHHHHHhhcCCChh--hHHHH
Q 011744 68 RTMGCI-RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL-VED---RGFLESLKDLISDNNPM--VVANA 140 (478)
Q Consensus 68 ~~l~~i-~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~-~~~---~~~~~~l~~lL~d~~~~--V~~~a 140 (478)
-.+++. +++. +...|.+-++|+...-||-++-+..+++..-|-. +++ ..+.+.+...+.+.+.. ++..+
T Consensus 511 vilAk~~g~~~----v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~ 586 (975)
T COG5181 511 VILAKMGGDPR----VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPC 586 (975)
T ss_pred HHHHHHcCChH----HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEec
Confidence 233332 3343 4445888889988888999999999988765432 111 12334444445444432 22222
Q ss_pred HHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccC-----CChHHHHHHHHHhhhhhcCCChHHH
Q 011744 141 VAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA-----ADAREAENIVERVTPRLQHANCAVV 215 (478)
Q Consensus 141 ~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~-----~~~~~~~~~l~~l~~~l~~~~~~V~ 215 (478)
+.+..-=..-.+ .....+++..+++.|+...|-......++.+.+.+ .+.++...+=+.+...+....+.|+
T Consensus 587 f~tv~vsl~~r~---kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvL 663 (975)
T COG5181 587 FSTVLVSLEFRG---KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVL 663 (975)
T ss_pred ccceeeehhhcc---CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHH
Confidence 211110000001 12234677778888887777777665554443321 1122333333334445555566655
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhh-cCChhHHHHHHHHHHHHHhhCccch--hhccce-e---eeccCC
Q 011744 216 LSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTIL--AHEIKV-F---FCKYND 288 (478)
Q Consensus 216 ~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~~~~~~--~~~~~~-~---~~l~~d 288 (478)
=..+++++.+.... .-...+.-+..++|.|.-+| +++.-+.-.....+..|+.+.|+.+ .++..+ | ..+.+-
T Consensus 664 gsil~Ai~~I~sv~-~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~ 742 (975)
T COG5181 664 GSILKAICSIYSVH-RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW 742 (975)
T ss_pred HHHHHHHHHHhhhh-cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh
Confidence 44445444432100 00000111234556555556 4566677777888888998888754 334442 2 234566
Q ss_pred ChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHH
Q 011744 289 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEA 368 (478)
Q Consensus 289 d~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~ 368 (478)
..+||+.|-+.+.-+...--=++++..|++-++..+-.-|.-..-+|+..++.-.+. ..+.+++.=.+.....|.+.+
T Consensus 743 nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf--sVlP~lm~dY~TPe~nVQnGv 820 (975)
T COG5181 743 NKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF--SVLPTLMSDYETPEANVQNGV 820 (975)
T ss_pred hHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch--hhHHHHHhcccCchhHHHHhH
Confidence 789999999998877655445678888888877776667766666777777764433 456777666666666666666
Q ss_pred HHHHHHHHhhCCcc---hHHHHHHHH-hhcCCCChhhHHHHHHHHhhcc---cCccCC---HHHHHHHHhhcCCCCCHHH
Q 011744 369 IIVIKDIFRRYPNT---YESIIATLC-ESLDTLDEPEAKASMIWIIGEY---AERIDN---ADELLESFLESFPEEPAQV 438 (478)
Q Consensus 369 ~~~l~~i~~~~~~~---~~~~i~~L~-~~l~~~~~~~~~~~~~~ilGE~---~~~~~~---~~~~l~~l~~~~~~~~~~v 438 (478)
+..++-+.+-..+. +-+.+..|+ +.+-| .|+.-++.++-+|.-. +.-... ...+++.+.-+..+++|.|
T Consensus 821 Lkam~fmFeyig~~s~dYvy~itPlleDAltD-rD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhv 899 (975)
T COG5181 821 LKAMCFMFEYIGQASLDYVYSITPLLEDALTD-RDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHV 899 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc-cchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHH
Confidence 66555443321222 223333333 33433 2443456555444322 111111 3356667777888899999
Q ss_pred HHHHHHHHHHHhccCC
Q 011744 439 QLQLLTATVKLFLKKP 454 (478)
Q Consensus 439 k~~il~a~~Kl~~~~~ 454 (478)
...+..++--++....
T Consensus 900 i~~~~Eg~e~~~~~lg 915 (975)
T COG5181 900 IQSFDEGMESFATVLG 915 (975)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9988877766665443
No 72
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.00 E-value=0.01 Score=63.36 Aligned_cols=372 Identities=16% Similarity=0.176 Sum_probs=209.0
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCc
Q 011744 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (478)
Q Consensus 76 ~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~ 155 (478)
..+-..+.+....+.+|..|.||+.++.=++.+.+.-++........+.+.++..|....|+.+|+..+..+.+....+.
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence 34445666778888899999999999999999988766655445778999999999999999999999888766542221
Q ss_pred ccccHHHHHHHHHhcccCChhhHHH-H----HHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcC
Q 011744 156 FEITSHTLSKLLTALNECTEWGQVF-I----LDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (478)
Q Consensus 156 ~~~~~~~~~~Ll~~l~~~~~~~q~~-l----l~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~ 230 (478)
+..+...+.+++...+. .|..-. + ..+-..+.+ +. ............+++.-+.+++++++-...+..+..
T Consensus 312 -d~~~~~~~~l~~~~~d~-~~~v~~~~~~~~~~L~~~~~~-~~-~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 312 -DVVKSLTESLVQAVEDG-SWRVSYMVADKFSELSSAVGP-SA-TRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred -hhhhhhhHHHHHHhcCh-hHHHHHHHhhhhhhHHHHhcc-cc-CcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence 22223334444443332 233221 1 111111222 00 011234445556667777888888776655543332
Q ss_pred ChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc--cchhhccceee-eccCCChhHHHHHHHHHHHhc--
Q 011744 231 STDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--TILAHEIKVFF-CKYNDPIYVKMEKLEIMIKLA-- 304 (478)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~--~~~~~~~~~~~-~l~~dd~~ir~~al~lL~~l~-- 304 (478)
.+....-..+.+.+.+..+.. ++..+|-+.......+....| +.+.+..+.+. .+.++++.+|..-.+.+..+-
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v 467 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV 467 (759)
T ss_pred cccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhc
Confidence 211111111233344444544 566777666555555444333 23333344433 345666888887776553321
Q ss_pred -CcccHHHH----HHHHHHhhhhcCHHHHHHHHHHHHHHHhcch-h-hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 011744 305 -SDRNIDQV----LLEFKEYATEVDVDFVRKAVRAIGRCAIKLE-R-AAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (478)
Q Consensus 305 -~~~n~~~I----v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~-~-~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~ 377 (478)
+...+... ++.+.....+....+|.+++..+-.++.... . ..+.+-..+...+.+....++..+...+..++.
T Consensus 468 ~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 468 NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVE 547 (759)
T ss_pred cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHH
Confidence 22233333 3334444444556677788888877665532 1 122344455555666666788888888888876
Q ss_pred hCC--cchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC---HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcc
Q 011744 378 RYP--NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLK 452 (478)
Q Consensus 378 ~~~--~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~---~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~ 452 (478)
.+. +.+...+.++.....+- .-..+.+.+..+.+++..... ..+++..+.+--.+-.++||.-++-.+-|+...
T Consensus 548 ~~G~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 548 TFGSEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred HhCcchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 655 44455566655443321 112355556666555554433 344555544434556677777777777776554
No 73
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.045 Score=59.17 Aligned_cols=413 Identities=13% Similarity=0.143 Sum_probs=208.3
Q ss_pred CCCchhhHHHHHH----hccCCChhHHHHHHHHHHHhccc-CchHHHHHHHHHHhhcCCCC-HHHHHHHHHHhc-----C
Q 011744 4 GKDVSSLFTDVVN----CMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPN-PLIRALAVRTMG-----C 72 (478)
Q Consensus 4 G~d~~~~~~~ii~----l~~s~~~~~Krl~yl~l~~~~~~-~~e~~~l~in~l~kdL~~~n-~~vr~~AL~~l~-----~ 72 (478)
|.|++.+.-.+++ .+++.+..++-=+-=.+..+... .++++.-++.++..-++--+ +....-|.-+++ .
T Consensus 332 ~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 332 GEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred ccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 6666665545554 34455555443333333333333 25666666766655333222 233333333333 3
Q ss_pred CChhhhhHHHHHHHHhhcC--------CCChHHHHHHHHHHHHHHhhc-ccccccccHHH-----HHHHhhcCCChhhHH
Q 011744 73 IRVDKITEYLCDPLQRCLK--------DDDPYVRKTAAICVAKLYDIN-AELVEDRGFLE-----SLKDLISDNNPMVVA 138 (478)
Q Consensus 73 i~~~e~~~~l~~~i~~~l~--------~~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~-----~l~~lL~d~~~~V~~ 138 (478)
+-.|..++.++|.|.+.+. +.-..||-+|+..+-.+++.+ |+.+. .+.. .+...+-|++..+|+
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~--p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLK--PVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhh--HHHHHHHHHHHHHHhcCchhhHhH
Confidence 4467888899999988885 245689999998888888854 44443 2333 334456799999999
Q ss_pred HHHHHHHHHhhhCC--CCcccccHHHHHH-HHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhh-hcCCChHH
Q 011744 139 NAVAALAEIEENSS--RPIFEITSHTLSK-LLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR-LQHANCAV 214 (478)
Q Consensus 139 ~a~~~l~~i~~~~~--~~~~~~~~~~~~~-Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~-l~~~~~~V 214 (478)
+|..|+.|.....+ +...+++.. ..+ -+. ...+-|.++. ..+..| +.....+++.+... +.|=+..+
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~-~dy~sV~--~rsNcy~~l~--~~ia~~----~~y~~~~f~~L~t~Kv~HWd~~i 560 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLIST-IDYFSVT--NRSNCYLDLC--VSIAEF----SGYREPVFNHLLTKKVCHWDVKI 560 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhh-cchhhhh--hhhhHHHHHh--HHHHhh----hhHHHHHHHHHHhcccccccHHH
Confidence 99999998654422 111222110 000 000 0112243322 111111 22234556665543 66778888
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHH-HhhcCChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHH
Q 011744 215 VLSAVKMILQQMELITSTDVVRNLCKKMAPPLV-TLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVK 293 (478)
Q Consensus 215 ~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir 293 (478)
+.-++..+-.+.. ..|+.... ...++++ ..++++.+.|....-+.+.++...... .+.+. ...
T Consensus 561 relaa~aL~~Ls~--~~pk~~a~---~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l-~~~~~----------~l~ 624 (1133)
T KOG1943|consen 561 RELAAYALHKLSL--TEPKYLAD---YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKL-EPVIK----------GLD 624 (1133)
T ss_pred HHHHHHHHHHHHH--hhHHhhcc---cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhh-hhhhh----------hhH
Confidence 9888888877642 24454432 2344444 445678888887777777766532110 00000 000
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHH-Hhhh-hcCHHHHHHHHHHHHHHHhcch-----hhHHHHHHHHHHHhcccchhHHH
Q 011744 294 MEKLEIMIKLASDRNIDQVLLEFK-EYAT-EVDVDFVRKAVRAIGRCAIKLE-----RAAERCISVLLELIKIKVNYVVQ 366 (478)
Q Consensus 294 ~~al~lL~~l~~~~n~~~Iv~~L~-~~l~-~~d~~~r~~~v~~i~~l~~~~~-----~~~~~~i~~ll~ll~~~~~~v~~ 366 (478)
...+.-+. .+++.+. .+.. -...-+|....+.|..+..... ...+.+-..+.+.++..+ .+++
T Consensus 625 e~~i~~l~---------~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~ 694 (1133)
T KOG1943|consen 625 ENRIAGLL---------SIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRD 694 (1133)
T ss_pred HHHhhhhh---------hhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHH
Confidence 00000000 0111111 0000 0001111111222222221111 112223334444444444 6777
Q ss_pred HHHHHHHHHHhh----CCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCcc-CC--HHHHHHHHhhcCCCC-CHHH
Q 011744 367 EAIIVIKDIFRR----YPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-DN--ADELLESFLESFPEE-PAQV 438 (478)
Q Consensus 367 ~~~~~l~~i~~~----~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~-~~--~~~~l~~l~~~~~~~-~~~v 438 (478)
+++..+.+++.. ++.....++.+.+..+.+.++...++.++-++|--.... .. -..+.+.+..-++.. .++-
T Consensus 695 ~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~a 774 (1133)
T KOG1943|consen 695 AAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEA 774 (1133)
T ss_pred HHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHH
Confidence 788887777643 333333466777777777666666777777777654222 11 123344455555544 7788
Q ss_pred HHHHHHHHHHHhccC
Q 011744 439 QLQLLTATVKLFLKK 453 (478)
Q Consensus 439 k~~il~a~~Kl~~~~ 453 (478)
|.+-+.++.+++...
T Consensus 775 R~~~V~al~~v~~~~ 789 (1133)
T KOG1943|consen 775 RQQNVKALAHVCKTV 789 (1133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877654
No 74
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.91 E-value=7.4e-05 Score=57.65 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=67.8
Q ss_pred HHHHHhc-cCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhc
Q 011744 12 TDVVNCM-QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (478)
Q Consensus 12 ~~ii~l~-~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l 90 (478)
+..++.+ .++++..|.-+.-+++.+. ++ -+++.+.+-++|+|+.+|..|..+|+.+++++..+. +.+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~---~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~----L~~~l 71 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG---DP---EAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPA----LIKLL 71 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT---HH---HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHH----HHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC---CH---hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHH----HHHHH
Confidence 3566766 8899999998888777543 22 247888888899999999999999999998776665 77777
Q ss_pred CC-CChHHHHHHHHHHH
Q 011744 91 KD-DDPYVRKTAAICVA 106 (478)
Q Consensus 91 ~~-~~~~VRk~A~~al~ 106 (478)
.+ ++..||..|+.+++
T Consensus 72 ~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 72 QDDDDEVVREAAAEALG 88 (88)
T ss_dssp TC-SSHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHhhcC
Confidence 76 56778999998874
No 75
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.90 E-value=0.033 Score=62.15 Aligned_cols=326 Identities=13% Similarity=0.113 Sum_probs=165.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHH
Q 011744 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLS 164 (478)
Q Consensus 85 ~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~ 164 (478)
.|...+..+.+.+|-||..|+..|...+|.....++.-..+..-+.|....|+.+|+.+++.
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGr------------------ 881 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGR------------------ 881 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhh------------------
Confidence 34444455666777777777777777777665544555556666667777777777666654
Q ss_pred HHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhh
Q 011744 165 KLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAP 244 (478)
Q Consensus 165 ~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
|.-..++...++.+.+.....+.+-+|+--+++.+..+....++-+.+. ..++.
T Consensus 882 -----------------------fvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~---~~cak 935 (1692)
T KOG1020|consen 882 -----------------------FVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV---DMCAK 935 (1692)
T ss_pred -----------------------hhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH---HHHHH
Confidence 2222334445667777778888999999999999887764323322222 22333
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHH------HHhcCcccHHHHHHHHH-
Q 011744 245 PLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM------IKLASDRNIDQVLLEFK- 317 (478)
Q Consensus 245 ~l~~ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL------~~l~~~~n~~~Iv~~L~- 317 (478)
.|.+.-..+.+++-.+.+++.++=-.-+.-. ++-+.+.++..... +.+++. -.++++..++
T Consensus 936 mlrRv~DEEg~I~kLv~etf~klWF~p~~~~-----------~d~~~~~~kI~~~~~vv~~~~d~~~~-~~eqLl~~ilk 1003 (1692)
T KOG1020|consen 936 MLRRVNDEEGNIKKLVRETFLKLWFTPVPEV-----------NDQPAKARKISLEVDVVMSQVDLMND-WLEQLLDHILK 1003 (1692)
T ss_pred HHHHhccchhHHHHHHHHHHHHHhccCCCcc-----------cccHHHHHhhHHHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 3333333456799999998888743211100 01111111111110 111121 1223333322
Q ss_pred Hhh----hhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHhhCCcchH-HHHHHHH
Q 011744 318 EYA----TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELI-KIKVNYVVQEAIIVIKDIFRRYPNTYE-SIIATLC 391 (478)
Q Consensus 318 ~~l----~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll-~~~~~~v~~~~~~~l~~i~~~~~~~~~-~~i~~L~ 391 (478)
.+. ..+-.++....+.....+.... -......+--... ...+..-..+.+..+..+..-.|.+-. +-+..|.
T Consensus 1004 ~~~~~~~~~~~~~v~~~~v~~~~~L~~~c--l~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~ 1081 (1692)
T KOG1020|consen 1004 FYLLKTMKESVKPVALAKVTHVLNLLTHC--LVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQ 1081 (1692)
T ss_pred HHHhhhhhhhhhHHHHhhcchHHHHHHHH--HHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhh
Confidence 221 1111222222222222222211 0011111110111 112222224555555555555666544 5566666
Q ss_pred hhcCC----CChhhHHHHHHHHhhcccCccCCHH-HHHHH----HhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHHH
Q 011744 392 ESLDT----LDEPEAKASMIWIIGEYAERIDNAD-ELLES----FLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMI 462 (478)
Q Consensus 392 ~~l~~----~~~~~~~~~~~~ilGE~~~~~~~~~-~~l~~----l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~ 462 (478)
.||.. .++.++...++.++-..-++.++++ .+++. +...+..-+-.+--.++.++++++.++-. --+.+
T Consensus 1082 PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~--~~~~v 1159 (1692)
T KOG1020|consen 1082 PYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTD--GAKVV 1159 (1692)
T ss_pred hHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhcc--chHHH
Confidence 67743 2345567777888877777777743 33333 34444444555566678899999988654 24555
Q ss_pred HHHHHHHH
Q 011744 463 QVTLKYYT 470 (478)
Q Consensus 463 ~~~l~~~~ 470 (478)
..+|..+-
T Consensus 1160 ~~cf~~~~ 1167 (1692)
T KOG1020|consen 1160 KACFSCYL 1167 (1692)
T ss_pred HHHHHHHH
Confidence 55555443
No 76
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.89 E-value=3.9e-05 Score=62.81 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=81.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCCh--h----hhhH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---c
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRV--D----KITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---V 116 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i~~--~----e~~~-~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~ 116 (478)
+++.+.+-++++++.+|..|+.+++++.. + .+.+ .++|.+.+++.++++.||+.|+.++.++....|.. +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 35667777778888899999998888763 2 2333 56788999999999999999999999998765432 2
Q ss_pred ccccHHHHHHHhhcCCChhhHHHHHHHHHHHh
Q 011744 117 EDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 117 ~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~ 148 (478)
...+.++.+.+++++.+..++..|+.++..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23467899999999999999999999988764
No 77
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.011 Score=63.53 Aligned_cols=249 Identities=20% Similarity=0.206 Sum_probs=133.6
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc-cccccccHHHHHHHhhcC-CChhhHHHHHHHHHHHhhhCCC
Q 011744 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSR 153 (478)
Q Consensus 76 ~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p-~~~~~~~~~~~l~~lL~d-~~~~V~~~a~~~l~~i~~~~~~ 153 (478)
|++++.++..+...++|.+..||..||..++++....| ++++ ..+..+..+++- .++..--+|+.++.+++...
T Consensus 336 ~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad--~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-- 411 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD--QVIGSVIDLFNPAEDDSAWHGACLALAELALRG-- 411 (1133)
T ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH--HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC--
Confidence 58888999999999999999999999999999998877 3333 344555555543 23556668888888887643
Q ss_pred CcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhh-cCCChHHHHHHHHHHHHhhhhcCCh
Q 011744 154 PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL-QHANCAVVLSAVKMILQQMELITST 232 (478)
Q Consensus 154 ~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~~~~~~~~~ 232 (478)
+-+ +..+..++. .+++.+. |. ...- .+.+..|+=.|+-....+... -+|
T Consensus 412 --lLl-ps~l~dVvp-----------lI~kaL~-Yd--------------~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~ 461 (1133)
T KOG1943|consen 412 --LLL-PSLLEDVVP-----------LILKALH-YD--------------VRRGQHSVGQHVRDAACYVCWAFARA-YSP 461 (1133)
T ss_pred --Ccc-hHHHHHHHH-----------HHHHHhh-hh--------------hhhcccccccchHHHHHHHHHHHHhc-CCh
Confidence 110 011111111 0111111 00 0011 134455665554444443321 244
Q ss_pred HHHHHHHHHhhhHHH--HhhcCChhHHHHHHHHHHHHHhhCccchhhc-cceeeeccCCChhHH--HH-HHHHHHHhcCc
Q 011744 233 DVVRNLCKKMAPPLV--TLLSAEPEIQYVALRNINLIVQRRPTILAHE-IKVFFCKYNDPIYVK--ME-KLEIMIKLASD 306 (478)
Q Consensus 233 ~~~~~~~~~~~~~l~--~ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~-~~~~~~l~~dd~~ir--~~-al~lL~~l~~~ 306 (478)
+.++.+.+++...|. .+..++-|.|++|--++.+.+.+.+++ || ++.+. .-|..++. .. =+++=..++.-
T Consensus 462 ~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~--p~Gi~Lis--~~dy~sV~~rsNcy~~l~~~ia~~ 537 (1133)
T KOG1943|consen 462 SDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF--PHGISLIS--TIDYFSVTNRSNCYLDLCVSIAEF 537 (1133)
T ss_pred hhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC--CCchhhhh--hcchhhhhhhhhHHHHHhHHHHhh
Confidence 545545455555543 233578899999999999999875543 11 11000 00111111 11 11111222211
Q ss_pred -ccHHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHhcchhhHH-HHHHHHHHHhcccch
Q 011744 307 -RNIDQVLLEFKEY-ATEVDVDFVRKAVRAIGRCAIKLERAAE-RCISVLLELIKIKVN 362 (478)
Q Consensus 307 -~n~~~Iv~~L~~~-l~~~d~~~r~~~v~~i~~l~~~~~~~~~-~~i~~ll~ll~~~~~ 362 (478)
.=...+++.|... +..=|..+|..+..++.+++...|+... -++..+++....++.
T Consensus 538 ~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~ 596 (1133)
T KOG1943|consen 538 SGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDA 596 (1133)
T ss_pred hhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCCh
Confidence 1133455555433 3334667777777888877777665433 455555555444443
No 78
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.83 E-value=0.0043 Score=67.30 Aligned_cols=279 Identities=14% Similarity=0.150 Sum_probs=167.5
Q ss_pred HHHHHHhhcCC-CChHHHHHHHHHHHHHHhhcc--cccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC---CCc
Q 011744 82 LCDPLQRCLKD-DDPYVRKTAAICVAKLYDINA--ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS---RPI 155 (478)
Q Consensus 82 l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~---~~~ 155 (478)
+++-|..++++ ..+.-|.+|+.-+..+.+.-. ..++ ...|.+..++.|+.+.|+.+|+.++.++...-. ...
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD--RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD--RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh--hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 45566667766 555666666666666555322 2233 678999999999999999999999998765431 111
Q ss_pred ccccH-HHHHHHHHhccc-CChhhHHHHHHHHhhccCCChHHHHHHHHHhhh-----hhcCCChHHHHHHHHHHHHhhhh
Q 011744 156 FEITS-HTLSKLLTALNE-CTEWGQVFILDALSRYKAADAREAENIVERVTP-----RLQHANCAVVLSAVKMILQQMEL 228 (478)
Q Consensus 156 ~~~~~-~~~~~Ll~~l~~-~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~-----~l~~~~~~V~~ea~~~i~~~~~~ 228 (478)
-..+. -.++.|-..+.+ ......+..-..|..++ +.+..+++.... ++++.+.. +...
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA----~tA~rFle~~q~~~~~g~~n~~nse-------t~~~---- 565 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA----KTAYRFLELTQELRQAGMLNDPNSE-------TAPE---- 565 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH----HHHHHHHHHHHHHHhcccccCcccc-------cccc----
Confidence 11111 122222222233 23333333333333222 122233333221 12332221 0000
Q ss_pred cCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhC-----ccchhhccceeeeccCCChhHHHHHHHHHHH
Q 011744 229 ITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR-----PTILAHEIKVFFCKYNDPIYVKMEKLEIMIK 302 (478)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~-----~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~ 302 (478)
.......+++.+.+......|++ +++.+|..-++.|..++.-. .+++-.|+-.| |.+.|+.+|..-.+-+..
T Consensus 566 ~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTf--LNDkDw~LR~aFfdsI~g 643 (1431)
T KOG1240|consen 566 QNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITF--LNDKDWRLRGAFFDSIVG 643 (1431)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHH--hcCccHHHHHHHHhhccc
Confidence 00111222233333344457886 56799999999998887532 34555565443 345689999988888875
Q ss_pred hc---CcccH-HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcc---hhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 011744 303 LA---SDRNI-DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL---ERAAERCISVLLELIKIKVNYVVQEAIIVIKDI 375 (478)
Q Consensus 303 l~---~~~n~-~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~---~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i 375 (478)
++ ...++ +.+++-|.+-+.|..+-+...++.++..+.+.. .+....+++.++.+|-+.+..++..++..+..+
T Consensus 644 vsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 644 VSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAI 723 (1431)
T ss_pred eEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHH
Confidence 43 44444 567777778889988888888888888777653 345567888899999999999999999888877
Q ss_pred HhhC
Q 011744 376 FRRY 379 (478)
Q Consensus 376 ~~~~ 379 (478)
.++.
T Consensus 724 ~~~l 727 (1431)
T KOG1240|consen 724 ARQL 727 (1431)
T ss_pred Hhhh
Confidence 7653
No 79
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.83 E-value=0.016 Score=59.61 Aligned_cols=132 Identities=17% Similarity=0.231 Sum_probs=98.1
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHHHHHHHH
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQ 87 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~~l~~~i~ 87 (478)
.|-.++..... +...||++--++..|+..=|++.--++|++..-..+.+..||..|++.|..++ +++.+.-+...+.
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~ 102 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLV 102 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHH
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHH
Confidence 45566666654 78999999999999999999999999999999999999999999999999986 6899999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhh--cCCChhhHHHHHHHHHH
Q 011744 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI--SDNNPMVVANAVAALAE 146 (478)
Q Consensus 88 ~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL--~d~~~~V~~~a~~~l~~ 146 (478)
++|...++..+..+=.++..+++.+|... +...+.++. ...|..|+.-++..+..
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 99999999888888888888888888532 223334444 24566788888877754
No 80
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.82 E-value=0.00066 Score=62.77 Aligned_cols=183 Identities=20% Similarity=0.184 Sum_probs=111.6
Q ss_pred cCCCChHHHHHHHHHHHHHHhhc-ccccccccHH-------HHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHH
Q 011744 90 LKDDDPYVRKTAAICVAKLYDIN-AELVEDRGFL-------ESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (478)
Q Consensus 90 l~~~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~-------~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~ 161 (478)
-.+.++..|..|+..+.++...+ |....+ .+. +.+...+.|....|..+|+.++..+....+...-.....
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPP-DFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----H-HHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHH-HHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 37799999999999999998876 221111 233 445566778888899999999999887764443334455
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHH-HHHhhhhhcCCChHHHHHHHHHHHHhhhhcC--ChHHHH-H
Q 011744 162 TLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-VERVTPRLQHANCAVVLSAVKMILQQMELIT--STDVVR-N 237 (478)
Q Consensus 162 ~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~-l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~--~~~~~~-~ 237 (478)
.++.|++.+.+...+........|..+...-+ -...+ ...+....++.|+.|+.+++..+..+....+ .+.... .
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 67778888877777777665555554433222 11234 6666778899999999999999887754333 111111 1
Q ss_pred HHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccc
Q 011744 238 LCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI 274 (478)
Q Consensus 238 ~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~ 274 (478)
..+.+.+.+...++ .++++|..|-+++..+.+..|+-
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 12456777778886 78999999999999998876653
No 81
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.78 E-value=7.5e-05 Score=58.50 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=55.7
Q ss_pred hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhhHHHHH
Q 011744 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAV 141 (478)
Q Consensus 75 ~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~~~~V~~~a~ 141 (478)
..+..+.++|+|.+++.|+++.||..|+.+++.+.+..++.+-+ .++.+.+.++..|+|+.|+.+|-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 45778889999999999999999999999999999876544321 24667888899999999998883
No 82
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.66 E-value=0.00015 Score=59.31 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=58.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccc---ccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 82 l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
+++.+.+.+.+.++.+|..|+.++..+....|+.. -..+.++.+.++++|+++.|+..|+.++..++...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 67778889999999999999999999987654322 22377899999999999999999999999997654
No 83
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.57 E-value=0.0021 Score=59.32 Aligned_cols=179 Identities=8% Similarity=0.079 Sum_probs=109.8
Q ss_pred hcCCChHHHHHHHHHHHHhhhhcCChHHHHHH---HHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccce-
Q 011744 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNL---CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKV- 281 (478)
Q Consensus 207 l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~---~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~- 281 (478)
-.+.+|..+.+|+..+-.+...-...+....+ ++.+...+...++ ..+.+...|+..+..++..-+.-|.++.+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 35678888888887776654321011111211 2223334444444 345677888999999988766667766442
Q ss_pred ---e-eeccCCChhHHHHHHHHHHHhcCccc-HHHH-HHHHHHhhhhcCHHHHHHHHHHHHHHHhcch---h------hH
Q 011744 282 ---F-FCKYNDPIYVKMEKLEIMIKLASDRN-IDQV-LLEFKEYATEVDVDFVRKAVRAIGRCAIKLE---R------AA 346 (478)
Q Consensus 282 ---~-~~l~~dd~~ir~~al~lL~~l~~~~n-~~~I-v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~---~------~~ 346 (478)
+ ....+....|+..|-+.|..++..-+ ...+ ++.+.....+.++.+|..++..+..+.+.++ . ..
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 2 22334447899999999999998777 4566 5666677888999999999999999888776 1 12
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHH
Q 011744 347 ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES 385 (478)
Q Consensus 347 ~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~ 385 (478)
+.+++.+..++.++++.|+..+-..+..+....|+..+.
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~ 214 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPERAES 214 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhcc
Confidence 457889999999999999998888888887777765433
No 84
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.53 E-value=0.0099 Score=64.65 Aligned_cols=237 Identities=20% Similarity=0.194 Sum_probs=151.2
Q ss_pred hHHHHHHHHHHHhcccCch--HHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCh----------hhhhHHHHHHHHhhcC
Q 011744 24 ELKKLVYLYLINYAKSQPD--LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV----------DKITEYLCDPLQRCLK 91 (478)
Q Consensus 24 ~~Krl~yl~l~~~~~~~~e--~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~----------~e~~~~l~~~i~~~l~ 91 (478)
..|.-+...+..+...-.+ .+--+.+.+..-++++...||+.|+.+|+.+-. --+.+++.|.+..++.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~ 517 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLN 517 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhc
Confidence 3344444444444433322 334477888999999999999999998886521 1356789999999999
Q ss_pred C-CChHHHHHHHHHHHHHHhh------------------cccc--ccc-----------ccHHHHHHHhhcCCChhhHHH
Q 011744 92 D-DDPYVRKTAAICVAKLYDI------------------NAEL--VED-----------RGFLESLKDLISDNNPMVVAN 139 (478)
Q Consensus 92 ~-~~~~VRk~A~~al~~i~~~------------------~p~~--~~~-----------~~~~~~l~~lL~d~~~~V~~~ 139 (478)
| ...+||-.=|.++..++.. +|+. .++ ....+.+..+|.|++|.|+++
T Consensus 518 d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~ 597 (1431)
T KOG1240|consen 518 DSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRA 597 (1431)
T ss_pred cCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 9 7778988777777666532 1211 110 123355567899999999999
Q ss_pred HHHHHHHHhhhCCCCc-ccccHHHHHHHHHhcccCChhhHHHHHHHHhh---cc-CCChHHHHHHHHHhhhhhcCCChHH
Q 011744 140 AVAALAEIEENSSRPI-FEITSHTLSKLLTALNECTEWGQVFILDALSR---YK-AADAREAENIVERVTPRLQHANCAV 214 (478)
Q Consensus 140 a~~~l~~i~~~~~~~~-~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~---~~-~~~~~~~~~~l~~l~~~l~~~~~~V 214 (478)
.+..+..+|.--+... -+ -++.+|++-|++.|+-+.....+-+.- |. +.+ ..+.+++.+..-+.+..++|
T Consensus 598 Lle~i~~LC~FFGk~ksND---~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q~ltD~EE~V 672 (1431)
T KOG1240|consen 598 LLESIIPLCVFFGKEKSND---VILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQGLTDGEEAV 672 (1431)
T ss_pred HHHHHHHHHHHhhhccccc---chHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHHhccCcchhh
Confidence 9988887775322111 11 246778888888866677767666652 22 221 12246666777788999999
Q ss_pred HHHHHHHHHHhhh--hcCChHHHHHHHHHhhhHHH-HhhcCChhHHHHHHHHHHHHHhh
Q 011744 215 VLSAVKMILQQME--LITSTDVVRNLCKKMAPPLV-TLLSAEPEIQYVALRNINLIVQR 270 (478)
Q Consensus 215 ~~ea~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~-~ll~~~~~ir~~aL~~l~~l~~~ 270 (478)
+..|..++--+.+ .+..+.. ..+++... .|..++.=+|+.++..+..+...
T Consensus 673 iv~aL~~ls~Lik~~ll~K~~v-----~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 673 IVSALGSLSILIKLGLLRKPAV-----KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHHHHhcccchHHH-----HHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 9888777654432 1222222 22333222 34457777999999999988765
No 85
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.00098 Score=71.99 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=103.7
Q ss_pred hHHHHHHhc----cCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcC-CCCHHHHHHHHHHhcCCC--hhhhhHHH
Q 011744 10 LFTDVVNCM----QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKITEYL 82 (478)
Q Consensus 10 ~~~~ii~l~----~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~-~~n~~vr~~AL~~l~~i~--~~e~~~~l 82 (478)
+.|-++++. -.+|+++++.+++++..+.--..+..--..+.+..-++ +++|.+|+.+.-.+|.+. -|-+++..
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~ 999 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPW 999 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchh
Confidence 445566665 34578889999999888776665555445556666665 889999998888888764 57777888
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 83 ~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
-+.+..-+.|+++.|||.|++.+.++...+ .+.-.|.+.....++.|+++.++.-|=..+.++..+.
T Consensus 1000 T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1000 TEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred hHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 888888889999999999999888876543 2322366777788888999888877777777776654
No 86
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.39 E-value=0.00018 Score=50.08 Aligned_cols=52 Identities=33% Similarity=0.417 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhhHHHHHHHHHH
Q 011744 95 PYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAE 146 (478)
Q Consensus 95 ~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~~~~V~~~a~~~l~~ 146 (478)
|.||..|+.+++.+....|+...+ ++.++.|..+|.|+++.|+.+|+.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 457777777777655444433221 1455666666777777777777776654
No 87
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.052 Score=49.74 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=67.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLK--DDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~--~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l 125 (478)
+..+-|...+.....+.-+.-.|+..+..+-++. +...+. +..|.||-.|+.|++.+. .|+ ..+.+
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~----l~~vl~desq~pmvRhEAaealga~~--~~~------~~~~l 105 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQDEDAVPV----LVEVLLDESQEPMVRHEAAEALGAIG--DPE------SLEIL 105 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhccchhhHH----HHHHhcccccchHHHHHHHHHHHhhc--chh------hHHHH
Confidence 6777777777666666677778888887777776 555554 478899999999999887 444 44777
Q ss_pred HHhhcCCChhhHHHHHHHHHHHhhh
Q 011744 126 KDLISDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 126 ~~lL~d~~~~V~~~a~~~l~~i~~~ 150 (478)
.+..+|+-..|+.++..++.++...
T Consensus 106 ~k~~~dp~~~v~ETc~lAi~rle~~ 130 (289)
T KOG0567|consen 106 TKYIKDPCKEVRETCELAIKRLEWK 130 (289)
T ss_pred HHHhcCCccccchHHHHHHHHHHHh
Confidence 7777888888888887788776543
No 88
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.072 Score=59.64 Aligned_cols=296 Identities=16% Similarity=0.186 Sum_probs=172.7
Q ss_pred CCCHHHHHHHHHHhcCC------ChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc-ccc--ccHHHHHHH
Q 011744 57 DPNPLIRALAVRTMGCI------RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL-VED--RGFLESLKD 127 (478)
Q Consensus 57 ~~n~~vr~~AL~~l~~i------~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~-~~~--~~~~~~l~~ 127 (478)
+|++.|+..=......+ ...+....+..++...+.+..+.||-.+++|+..+.+..|.. +.+ +++-..+-+
T Consensus 1009 DP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fR 1088 (1702)
T KOG0915|consen 1009 DPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFR 1088 (1702)
T ss_pred CCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 68887764332222222 134566677888888999999999999999999999876632 111 011122223
Q ss_pred hhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhh
Q 011744 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (478)
Q Consensus 128 lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l 207 (478)
..+|-..+||.+|=.+...+. +++-.+ +++ .+.....+++..+.+.+
T Consensus 1089 vmDDIKEsVR~aa~~~~~~ls----------------Kl~vr~--~d~---------------~~~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1089 VMDDIKESVREAADKAARALS----------------KLCVRI--CDV---------------TNGAKGKEALDIILPFL 1135 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHhhh--ccc---------------CCcccHHHHHHHHHHHH
Confidence 345666677766644433321 222111 111 11222334455555544
Q ss_pred c-----CCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhcC--ChhHHHHHHHHHHHHHhhCccchhhccc
Q 011744 208 Q-----HANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA--EPEIQYVALRNINLIVQRRPTILAHEIK 280 (478)
Q Consensus 208 ~-----~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~ir~~aL~~l~~l~~~~~~~~~~~~~ 280 (478)
- |.-+.|+.-++.+++.+.++ .+..+....-.+++.|++..+. +..+-|.++++ ..+-. +.+.....
T Consensus 1136 l~~gims~v~evr~~si~tl~dl~Ks--sg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~---ealDt~R~ 1209 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKS--SGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIET---EALDTLRA 1209 (1702)
T ss_pred hccCcccchHHHHHHHHHHHHHHHHh--chhhhcchhhHHHHHHHHHccccchHHHHHHHHhh-hhhHH---HHHHHHHH
Confidence 3 44568999999999998763 2233332223566667777763 45678999988 22211 22221110
Q ss_pred eeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHhcc----hhhHHHHHHHHHH
Q 011744 281 VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKL----ERAAERCISVLLE 355 (478)
Q Consensus 281 ~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~-d~~~r~~~v~~i~~l~~~~----~~~~~~~i~~ll~ 355 (478)
. ..++-+ -..+++.+.+-.+.+..+++++++.+-++.+ .-..|.-...-|..++.++ .|....++..++.
T Consensus 1210 s--~akssp---mmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~ 1284 (1702)
T KOG0915|consen 1210 S--AAKSSP---MMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFP 1284 (1702)
T ss_pred h--hhcCCc---HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhh
Confidence 0 001111 2356677777777788888999998888753 3334444444555555555 4667788888888
Q ss_pred HhcccchhHHHHHHHHHHHHHh-hCCcchHHHHHHHH-hhcCC
Q 011744 356 LIKIKVNYVVQEAIIVIKDIFR-RYPNTYESIIATLC-ESLDT 396 (478)
Q Consensus 356 ll~~~~~~v~~~~~~~l~~i~~-~~~~~~~~~i~~L~-~~l~~ 396 (478)
.+++.+..++.......+.++. ..|+...+.++.+. .++++
T Consensus 1285 g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k 1327 (1702)
T KOG0915|consen 1285 GAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGK 1327 (1702)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcc
Confidence 8999888898888888888764 34444444455443 34444
No 89
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.048 Score=57.46 Aligned_cols=223 Identities=15% Similarity=0.152 Sum_probs=132.7
Q ss_pred HHHHHhhcCCC-CHHHHHHHHHHhcCC---Chhh-----hhHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhccccc-
Q 011744 48 VNTFVKDSQDP-NPLIRALAVRTMGCI---RVDK-----ITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELV- 116 (478)
Q Consensus 48 in~l~kdL~~~-n~~vr~~AL~~l~~i---~~~e-----~~~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~p~~~- 116 (478)
.+.|...|+.. +|..+--|+.-||.+ ++++ .++.++|.+..+|+| .++.+---|+.|+..++...|...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 45666677655 999999999988853 4443 466899999999998 678999999999999999998643
Q ss_pred --ccccHHHHHHH-hhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhcc----
Q 011744 117 --EDRGFLESLKD-LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---- 189 (478)
Q Consensus 117 --~~~~~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~---- 189 (478)
-+.+.+|.+.. |+.=+=..|..+++.+|..|.+.-+..... .+.+..-+.-+.-.+--.|-+.|-+..+.|
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ--AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22356777765 444344568888899998887654321111 111222222111112234555555555444
Q ss_pred CCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhh-cCChHHHHHHHH-HhhhHHHHhhc-CC----hhHHHHHHH
Q 011744 190 AADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEL-ITSTDVVRNLCK-KMAPPLVTLLS-AE----PEIQYVALR 262 (478)
Q Consensus 190 ~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~-~~~~~~~~~~~~-~~~~~l~~ll~-~~----~~ir~~aL~ 262 (478)
+++....-+.++.+.++|++.+.-++-.++-++.++.+. .+.|+.+++++. .++.....|++ .. .-+....++
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIr 406 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIR 406 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHH
Confidence 444444445677777888887765555555555555432 246677766543 33333344554 21 123344445
Q ss_pred HHHHHHhhCc
Q 011744 263 NINLIVQRRP 272 (478)
Q Consensus 263 ~l~~l~~~~~ 272 (478)
.+..++...|
T Consensus 407 mls~msS~~p 416 (1051)
T KOG0168|consen 407 MLSLMSSGSP 416 (1051)
T ss_pred HHHHHccCCh
Confidence 5555544333
No 90
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.0037 Score=67.76 Aligned_cols=148 Identities=17% Similarity=0.188 Sum_probs=105.7
Q ss_pred CCCCHHHHHHHHHHhcCCC--hhhhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCC
Q 011744 56 QDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (478)
Q Consensus 56 ~~~n~~vr~~AL~~l~~i~--~~e~~~~l~~~i~~~l~-~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~ 132 (478)
...||.++..|-=+++.+. +.++++.=.|.+...+. +++|.||..++.+++-+.-..|.+++ .|.+.+...|.|.
T Consensus 933 ~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie--~~T~~Ly~rL~D~ 1010 (1251)
T KOG0414|consen 933 LFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE--PWTEHLYRRLRDE 1010 (1251)
T ss_pred cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccc--hhhHHHHHHhcCc
Confidence 4578999999999999875 67899988899999887 89999999999999999999999998 5999999999999
Q ss_pred ChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCC
Q 011744 133 NPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHA 210 (478)
Q Consensus 133 ~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~ 210 (478)
++.|+.+|+..+..+.-.+- --..+.+..+...|.++++-..-..=.++..+..++ ....++++.++..|++.
T Consensus 1011 ~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1011 SPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred cHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHHHHhhccC
Confidence 99999999999987654431 011233444444555554433322223444443332 22334555555555443
No 91
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.26 E-value=0.14 Score=48.24 Aligned_cols=232 Identities=13% Similarity=0.196 Sum_probs=117.5
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhhcc-cccccccHHHHHHHhhcC--CChhhHHHHHHHHHHHhhhCCCCcccccHHH
Q 011744 86 LQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISD--NNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (478)
Q Consensus 86 i~~~l~~~~~~VRk~A~~al~~i~~~~p-~~~~~~~~~~~l~~lL~d--~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~ 162 (478)
+...|.++++.+|.+|..++..+...-| +.+.. .-+..+.+.+.+ .|+.....++.++..+..... +....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~-~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-----~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSR-QEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-----FSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccH-HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-----CChhh
Confidence 5567888999999999999998877655 33322 112333332211 344455555666666553221 00111
Q ss_pred HHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHh
Q 011744 163 LSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKM 242 (478)
Q Consensus 163 ~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~ 242 (478)
...+++.+ +..+.. ++-..+.|+.+-+.+-.+... ..+.++.+....
T Consensus 78 ~~~i~~~l--------------~~~~~~-----------------q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~f 124 (262)
T PF14500_consen 78 AVKILRSL--------------FQNVDV-----------------QSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDF 124 (262)
T ss_pred HHHHHHHH--------------HHhCCh-----------------hhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHH
Confidence 22222211 001100 011112333333333322211 111222222233
Q ss_pred hhHHHHhhc--CChhHHHHHHHHHHHHHhhCc--cc-------hhhccceeee-ccCCChhHHHHHHHHH--HHhc-Ccc
Q 011744 243 APPLVTLLS--AEPEIQYVALRNINLIVQRRP--TI-------LAHEIKVFFC-KYNDPIYVKMEKLEIM--IKLA-SDR 307 (478)
Q Consensus 243 ~~~l~~ll~--~~~~ir~~aL~~l~~l~~~~~--~~-------~~~~~~~~~~-l~~dd~~ir~~al~lL--~~l~-~~~ 307 (478)
+..++...+ +||.---.+.+.+..+.+..+ +. +.-|.++=|. -.+|+..|.+.-|..- -.++ ++.
T Consensus 125 v~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~ 204 (262)
T PF14500_consen 125 VYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL 204 (262)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh
Confidence 444455553 677666666777777766654 11 2223343222 2345545555554443 3344 344
Q ss_pred cHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHH
Q 011744 308 NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA-AERCISVLLEL 356 (478)
Q Consensus 308 n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~-~~~~i~~ll~l 356 (478)
=.+..++-|++=+.+..+..+.++++.+..|...|+.. ...+...+-+-
T Consensus 205 fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~ 254 (262)
T PF14500_consen 205 FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNA 254 (262)
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 45678888888888888889999999999999998642 34444444433
No 92
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.25 E-value=0.13 Score=53.07 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHhcCC--ChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChh
Q 011744 58 PNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM 135 (478)
Q Consensus 58 ~n~~vr~~AL~~l~~i--~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~ 135 (478)
.++..+.+|-++++.. .-|++.+.-+..+..+..|.+..||+.|+..+..+++-.|+.+. ...+.|.++|...++.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~--kvaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS--KVADVLVQLLQTDDPV 111 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH--HHHHHHHHHTT---HH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh--HHHHHHHHHHhcccHH
Confidence 4677888888888876 35788889999999999999999999999999999999999887 6889999999988887
Q ss_pred hHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcc---cCChhhHHHHHHHHhh
Q 011744 136 VVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN---ECTEWGQVFILDALSR 187 (478)
Q Consensus 136 V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~---~~~~~~q~~ll~~l~~ 187 (478)
.+..+=.+|.++...++. ..+..+.+.+. ..++-..-++++++..
T Consensus 112 E~~~v~~sL~~ll~~d~k-------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDPK-------GTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHHHHHHHHHHHH-HH-------HHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 777666777776665542 23333444332 3456566677777753
No 93
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.21 E-value=0.001 Score=46.19 Aligned_cols=49 Identities=31% Similarity=0.363 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCCh------hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 011744 60 PLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKL 108 (478)
Q Consensus 60 ~~vr~~AL~~l~~i~~------~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i 108 (478)
|.+|..|+.+||++.. ....+.++|.+..++.|+++.||..|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999998751 245667889999999999999999999999864
No 94
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.20 E-value=0.26 Score=48.27 Aligned_cols=357 Identities=13% Similarity=0.156 Sum_probs=188.9
Q ss_pred CCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChh
Q 011744 56 QDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM 135 (478)
Q Consensus 56 ~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~ 135 (478)
+.+++.....-+..++.+..++.++.+...+-..++.....++ +.+.+...+..- .|.+ ...++.+.|+.
T Consensus 60 ~~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a~~~k~~---~~~~-fl~ll~r~d~~ 129 (442)
T KOG2759|consen 60 SANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYAHKLKRT---EWLS-FLNLLNRQDTF 129 (442)
T ss_pred hcccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHHHhhhcc---chHH-HHHHHhcCChH
Confidence 3456666666677777788888888877777777766544332 233333333221 2433 44467777777
Q ss_pred hHHHHHHHHHHHhhhCC----CCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHH----HHHHHHhhhhh
Q 011744 136 VVANAVAALAEIEENSS----RPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA----ENIVERVTPRL 207 (478)
Q Consensus 136 V~~~a~~~l~~i~~~~~----~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~----~~~l~~l~~~l 207 (478)
.+.-+...+..+..-.. ..-+.+..+-+..+++.. ..+...+ ...++|+.+.+.++-.. .+-+..+...+
T Consensus 130 iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~-~~~~~~~-~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l 207 (442)
T KOG2759|consen 130 IVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSS-TNNDYIQ-FAARCLQTLLRVDEYRYAFVIADGVSLLIRIL 207 (442)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcc-CCCchHH-HHHHHHHHHhcCcchhheeeecCcchhhHHHH
Confidence 66645566655544321 111223333333333321 1222222 33445544433221100 01112223333
Q ss_pred --cCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhcC--ChhHHHHHHHHHHHHHhhCccchhhcccee
Q 011744 208 --QHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLSA--EPEIQYVALRNINLIVQRRPTILAHEIKVF 282 (478)
Q Consensus 208 --~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~--~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~ 282 (478)
...+--+.|..+-++-.+. + +|...+.+-. +.++.|..+++. ..-+-.+++.++..+...
T Consensus 208 ~s~~~~~QlQYqsifciWlLt--F-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k------------ 272 (442)
T KOG2759|consen 208 ASTKCGFQLQYQSIFCIWLLT--F-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK------------ 272 (442)
T ss_pred hccCcchhHHHHHHHHHHHhh--c-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------
Confidence 2335567777766665442 1 3333322211 345555556542 122333445555555443
Q ss_pred eeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch--hhHHHHHH-HHHHHhcc
Q 011744 283 FCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE--RAAERCIS-VLLELIKI 359 (478)
Q Consensus 283 ~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~--~~~~~~i~-~ll~ll~~ 359 (478)
.++.+.++.+...+.. ++ +...++-|. --+-+|+|++.++-.--..+.+.+- ...+.|.. .-...|.-
T Consensus 273 ----~~~~~~~k~~~~~mv~-~~---v~k~l~~L~-~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~W 343 (442)
T KOG2759|consen 273 ----GPDRETKKDIASQMVL-CK---VLKTLQSLE-ERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEW 343 (442)
T ss_pred ----CchhhHHHHHHHHHHh-cC---chHHHHHHH-hcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCC
Confidence 2334555433333221 11 222222222 1234677776665444344443321 12223333 33344555
Q ss_pred cchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCCHHHHHHH------HhhcCCC
Q 011744 360 KVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLES------FLESFPE 433 (478)
Q Consensus 360 ~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~~~~~l~~------l~~~~~~ 433 (478)
+..+..+..|.-=.+.+.. -.-.++..|++.|+...||.+.+.++.=||||....|....++.. +++-+..
T Consensus 344 SP~Hk~e~FW~eNa~rlne---nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh 420 (442)
T KOG2759|consen 344 SPVHKSEKFWRENADRLNE---NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH 420 (442)
T ss_pred CccccccchHHHhHHHHhh---ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC
Confidence 6667788888754444332 234578899999998888999999999999999998877666655 4555678
Q ss_pred CCHHHHHHHHHHHHHHhc
Q 011744 434 EPAQVQLQLLTATVKLFL 451 (478)
Q Consensus 434 ~~~~vk~~il~a~~Kl~~ 451 (478)
++++||...|.|.-|+..
T Consensus 421 ~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 421 EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 999999999999988864
No 95
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=97.19 E-value=0.3 Score=48.93 Aligned_cols=97 Identities=22% Similarity=0.316 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCC----hhhHHHHHHHHhhcccCccCCH---HHHHHHHhhc------
Q 011744 364 VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD----EPEAKASMIWIIGEYAERIDNA---DELLESFLES------ 430 (478)
Q Consensus 364 v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~----~~~~~~~~~~ilGE~~~~~~~~---~~~l~~l~~~------ 430 (478)
|+.-....+..+.+.+|...-..-+.+.+.+.... ..+.-...+|++|||+.-..+. .++++.+.+.
T Consensus 284 V~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~lly 363 (459)
T PF14764_consen 284 VRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLY 363 (459)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHH
Confidence 44444555556667777765444455566555332 2334678899999998755442 4444443221
Q ss_pred ------------CCCCCHHHHHHHHHHHHHHhccCCCcchHHHH
Q 011744 431 ------------FPEEPAQVQLQLLTATVKLFLKKPTEGPQQMI 462 (478)
Q Consensus 431 ------------~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~ 462 (478)
.....+.+-..++|+++|+++|.++ +-+..
T Consensus 364 E~~~~~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~d--l~pRv 405 (459)
T PF14764_consen 364 EVTQSRRDPSASRPSSQPRLMTVLMTALAKLASRSQD--LIPRV 405 (459)
T ss_pred HHhhccccccccCCCCchhHHHHHHHHHHHHHHhCHh--hhHHH
Confidence 1235677888999999999999887 55544
No 96
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.18 E-value=0.031 Score=56.64 Aligned_cols=227 Identities=14% Similarity=0.243 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHhcccCchHHH----HHHHHHHh-hcCCCCHHHHHHHHHHhcCCCh----hhhhHHHHHHHHhhc-CCC
Q 011744 24 ELKKLVYLYLINYAKSQPDLAI----LAVNTFVK-DSQDPNPLIRALAVRTMGCIRV----DKITEYLCDPLQRCL-KDD 93 (478)
Q Consensus 24 ~~Krl~yl~l~~~~~~~~e~~~----l~in~l~k-dL~~~n~~vr~~AL~~l~~i~~----~e~~~~l~~~i~~~l-~~~ 93 (478)
..++...++...+..-+++... -.++.+.+ ..+++++..|..|++.++.+.+ .+..+.++..+..-. ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 4566666666666544433211 12333333 3456678888888888886643 233444444444444 445
Q ss_pred ChHHHHHHHHHHHHH-----HhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCccc-ccHHHHHHHH
Q 011744 94 DPYVRKTAAICVAKL-----YDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLL 167 (478)
Q Consensus 94 ~~~VRk~A~~al~~i-----~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~-~~~~~~~~Ll 167 (478)
++..|..+...+.-+ .|.+|... .+.+.+..++.| +.+...|..++..+....+. ... ..+..++-|
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~~~---~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~-~l~~~~~a~vklL- 315 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPLAT---ELLDKLLELLSS--PELGQQAAKAFGILLSDSDD-VLNKENHANVKLL- 315 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCchHH---HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHH-hcCccccchhhhH-
Confidence 556666666555444 34566544 477888888876 55666677777666554211 100 011112222
Q ss_pred HhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHH
Q 011744 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLV 247 (478)
Q Consensus 168 ~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (478)
|-|- ....+++.+....+..+..+.-....++..+.++++. +.+..-...+.|-+.
T Consensus 316 --------ykQR---------------~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~-~vl~~~l~~LlPLLl 371 (415)
T PF12460_consen 316 --------YKQR---------------FFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK-SVLLPELPTLLPLLL 371 (415)
T ss_pred --------HhHH---------------HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHH
Confidence 1221 1112333333344443333333333333333333443 222222345667666
Q ss_pred Hhhc-CChhHHHHHHHHHHHHHhhCccchhhccce
Q 011744 248 TLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKV 281 (478)
Q Consensus 248 ~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~ 281 (478)
.-++ ++++++..+|+++..+....|+.+.+|+..
T Consensus 372 qsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~s 406 (415)
T PF12460_consen 372 QSLSLPDADVLLSSLETLKMILEEAPELISEHLSS 406 (415)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 6666 788999999999999999999999888763
No 97
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.09 E-value=0.0009 Score=40.32 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=22.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHh
Q 011744 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYD 110 (478)
Q Consensus 82 l~~~i~~~l~~~~~~VRk~A~~al~~i~~ 110 (478)
++|.+.+++.|+++.||..|+.|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888888765
No 98
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.09 E-value=0.41 Score=48.50 Aligned_cols=208 Identities=15% Similarity=0.244 Sum_probs=126.9
Q ss_pred HHHHHHHhcc-cCChhhHHHHHHHHhhccCC--ChHHHHHHHHHhhhhh-cCCChHHHHHHHHHHHHhhhhc---CChHH
Q 011744 162 TLSKLLTALN-ECTEWGQVFILDALSRYKAA--DAREAENIVERVTPRL-QHANCAVVLSAVKMILQQMELI---TSTDV 234 (478)
Q Consensus 162 ~~~~Ll~~l~-~~~~~~q~~ll~~l~~~~~~--~~~~~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~~~~~~---~~~~~ 234 (478)
.++.+++... ..+++.....++++..+..+ +++....+++...... ...+..-+..++..+..+...+ ++|..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 4555555432 34577777777777655433 2334556666665555 3334444555555554332211 23332
Q ss_pred HHHHHHHhhhHHHHhhcCChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHHHHhcCcccHHHHHH
Q 011744 235 VRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLL 314 (478)
Q Consensus 235 ~~~~~~~~~~~l~~ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~ 314 (478)
. .....|..++++ +++...+.+.+.-+....+++..+ -...-+.+|| .+.-...+++
T Consensus 270 ~-----~~~~~L~~lL~~-~~~g~~aA~~f~il~~d~~~~l~~--------------~~~a~vklLy---kQR~F~~~~p 326 (415)
T PF12460_consen 270 T-----ELLDKLLELLSS-PELGQQAAKAFGILLSDSDDVLNK--------------ENHANVKLLY---KQRFFTQVLP 326 (415)
T ss_pred H-----HHHHHHHHHhCC-hhhHHHHHHHHhhHhcCcHHhcCc--------------cccchhhhHH---hHHHHHHHHH
Confidence 2 344455555554 778888888888887754443322 0011222333 3444667888
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHhcchh-----hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHH
Q 011744 315 EFKEYATEVDVDFVRKAVRAIGRCAIKLER-----AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIAT 389 (478)
Q Consensus 315 ~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~-----~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~ 389 (478)
.|.+..+..+.+.|..-..++..+....|+ .....++.+++.|...+..+...+++.+..++...|+....-++.
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~s 406 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSS 406 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 888777777777777778888888777653 446678888888888888899999999999998887765444444
Q ss_pred HHh
Q 011744 390 LCE 392 (478)
Q Consensus 390 L~~ 392 (478)
++.
T Consensus 407 LI~ 409 (415)
T PF12460_consen 407 LIP 409 (415)
T ss_pred HHH
Confidence 443
No 99
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.28 Score=46.43 Aligned_cols=210 Identities=10% Similarity=0.166 Sum_probs=128.7
Q ss_pred hccCCChhHHHHHHHHHHHhcccC-----chHHHHHHHHHHh----hcCCCCHHHHHHHHHHhcCCC-hhhhhHHHHH--
Q 011744 17 CMQTENLELKKLVYLYLINYAKSQ-----PDLAILAVNTFVK----DSQDPNPLIRALAVRTMGCIR-VDKITEYLCD-- 84 (478)
Q Consensus 17 l~~s~~~~~Krl~yl~l~~~~~~~-----~e~~~l~in~l~k----dL~~~n~~vr~~AL~~l~~i~-~~e~~~~l~~-- 84 (478)
-+-.++-++|-++.-.+..+.+.. +++...+-+.+.| -+-..|..|-..|..++..+. .|.-.+.+.+
T Consensus 90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSe 169 (524)
T KOG4413|consen 90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESE 169 (524)
T ss_pred cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccc
Confidence 345556666666655554444433 2333323334433 345678888888888888774 3443333322
Q ss_pred -----HHHhhcCCCChHHHHHHHHHHHHHHhhcccccc---cccHHHHHHHhhcC-CChhhHHHHHHHHHHHhhhCCCCc
Q 011744 85 -----PLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPI 155 (478)
Q Consensus 85 -----~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d-~~~~V~~~a~~~l~~i~~~~~~~~ 155 (478)
...++..-.+..+|-....-+.+++..+|+... ..++++.+..-+.. +|.-|+.+++....++....-+..
T Consensus 170 llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgre 249 (524)
T KOG4413|consen 170 LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGRE 249 (524)
T ss_pred cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhh
Confidence 134444557788888888888888888886543 24677777665554 888999999999998876432212
Q ss_pred ccccHHHHHHHHHhcc--cCChhhHHHHHHHHhhccCCC------hHHH-H---HHHHHhhhhhcCCChHHHHHHHHHHH
Q 011744 156 FEITSHTLSKLLTALN--ECTEWGQVFILDALSRYKAAD------AREA-E---NIVERVTPRLQHANCAVVLSAVKMIL 223 (478)
Q Consensus 156 ~~~~~~~~~~Ll~~l~--~~~~~~q~~ll~~l~~~~~~~------~~~~-~---~~l~~l~~~l~~~~~~V~~ea~~~i~ 223 (478)
+-.-.+.+..+++.+. +.+||...+.+-.++++..+. ++.. + -.++....++.+.++...-.|+.+++
T Consensus 250 flaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalG 329 (524)
T KOG4413|consen 250 FLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALG 329 (524)
T ss_pred hcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHH
Confidence 2223456777777775 578999887665555544221 1111 1 13344455667778877777777877
Q ss_pred Hhh
Q 011744 224 QQM 226 (478)
Q Consensus 224 ~~~ 226 (478)
.+.
T Consensus 330 ilG 332 (524)
T KOG4413|consen 330 ILG 332 (524)
T ss_pred hcc
Confidence 653
No 100
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.68 Score=48.91 Aligned_cols=133 Identities=19% Similarity=0.179 Sum_probs=87.6
Q ss_pred hccCCChhHHHHHHHHHHHhcccCchH-HHH----HHHHHHhhcCCCCHHHHHHHHHHhcCCChhh--------------
Q 011744 17 CMQTENLELKKLVYLYLINYAKSQPDL-AIL----AVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-------------- 77 (478)
Q Consensus 17 l~~s~~~~~Krl~yl~l~~~~~~~~e~-~~l----~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e-------------- 77 (478)
+=+|.=++.||-+..++..++....+. ... .++.|+.|-. ||.+...||.++..+.+.+
T Consensus 31 vessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd 108 (970)
T KOG0946|consen 31 VESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDD 108 (970)
T ss_pred HhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhcCcchhhcccchhhhH
Confidence 557788999999999999988776542 222 3556666655 7888899999988764222
Q ss_pred ----hhH------HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccccc-----ccHHHHHHHhhcCCChhhHHHHHH
Q 011744 78 ----ITE------YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-----RGFLESLKDLISDNNPMVVANAVA 142 (478)
Q Consensus 78 ----~~~------~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~-----~~~~~~l~~lL~d~~~~V~~~a~~ 142 (478)
+++ ..+..+...+...+-+||+.|+.-+..+.+.-|.-+++ +.-+..+..+|.|....+|..|+.
T Consensus 109 ~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iL 188 (970)
T KOG0946|consen 109 LGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAIL 188 (970)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHH
Confidence 111 13344556666677788888887777766544422221 233466667777777777777777
Q ss_pred HHHHHhhhC
Q 011744 143 ALAEIEENS 151 (478)
Q Consensus 143 ~l~~i~~~~ 151 (478)
.|.++.+.+
T Consensus 189 lL~eL~k~n 197 (970)
T KOG0946|consen 189 LLSELVKDN 197 (970)
T ss_pred HHHHHHccC
Confidence 777776654
No 101
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.012 Score=60.80 Aligned_cols=126 Identities=21% Similarity=0.116 Sum_probs=75.3
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHH-HhhcCCCCHHHHHHHHHHhcCCC--hhhhhHHHHHHHHh
Q 011744 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTF-VKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQR 88 (478)
Q Consensus 12 ~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l-~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~~l~~~i~~ 88 (478)
+.|-+++.++|+-+|+-|-+.+.. +.....-.- +|..+ .-..++.|..||..|..+||.+. +|+.++. +..
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~al-Ay~GTgnnk-air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s----~V~ 595 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLAL-AYVGTGNNK-AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPS----TVS 595 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHH-HHhccCchh-hHHHhhcccccccchHHHHHHHHHheeeEecChhhchH----HHH
Confidence 345557777788887777665442 111111000 12222 23456778888888888888764 5555544 555
Q ss_pred hcC-CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 011744 89 CLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (478)
Q Consensus 89 ~l~-~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 147 (478)
+|. +-||.||--|++|++-.+.-... ...+..|..+.+|+...||.+|+.++.-|
T Consensus 596 lLses~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 596 LLSESYNPHVRYGAAMALGIACAGTGL----KEAINLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred HHhhhcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhhhcChHHHHHHHHHHHHHHH
Confidence 554 47888888888887743322111 13557777777888888887777666543
No 102
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=0.24 Score=56.04 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=110.1
Q ss_pred hhHHHHHHHHHHHh--cCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch----hhHHHHHHHHHHHhcccchh
Q 011744 290 IYVKMEKLEIMIKL--ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNY 363 (478)
Q Consensus 290 ~~ir~~al~lL~~l--~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~----~~~~~~i~~ll~ll~~~~~~ 363 (478)
.+++..--++++.+ +.++-+-.++++|...+...+.++|.+++..+|.+-.... ..........+.-+.+....
T Consensus 236 ~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 236 SSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChh
Confidence 45666777777775 4667777899999999999999999999999998765532 11223334445556777788
Q ss_pred HHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhccc--Cc-cCC-HHHHHHHHhhcCCCCCHHHH
Q 011744 364 VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYA--ER-IDN-ADELLESFLESFPEEPAQVQ 439 (478)
Q Consensus 364 v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~--~~-~~~-~~~~l~~l~~~~~~~~~~vk 439 (478)
|+-++++...+++.++|+..+.....+--...+ .|++++....-+++.-. .. ... +. ++..+.++..+-...||
T Consensus 316 vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~-~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR 393 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSIAKASTILLALRERD-LDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVR 393 (1266)
T ss_pred hhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhc-CChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHH
Confidence 999999999999999998755433332211122 24555433333333321 11 111 44 88888888888899999
Q ss_pred HHHHHHHHHHhcc
Q 011744 440 LQLLTATVKLFLK 452 (478)
Q Consensus 440 ~~il~a~~Kl~~~ 452 (478)
...+..++++|.+
T Consensus 394 ~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 394 KQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
No 103
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.04 Score=59.34 Aligned_cols=137 Identities=26% Similarity=0.327 Sum_probs=98.6
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhh---------c---CCCCHHHHHHHHHHhcCCChh-
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKD---------S---QDPNPLIRALAVRTMGCIRVD- 76 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kd---------L---~~~n~~vr~~AL~~l~~i~~~- 76 (478)
.||.|+||++|+-.++|.+.-..+..++.-++..-. -|.|| | +.-++..|.+|.-.|+.+...
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~----dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA----DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH----HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 578999999999999998766655555545444322 12233 2 223568999999999876421
Q ss_pred -----h-hhHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhcccc----cccccHHHHHHHhhcCCChhhHHHHHHHHH
Q 011744 77 -----K-ITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAEL----VEDRGFLESLKDLISDNNPMVVANAVAALA 145 (478)
Q Consensus 77 -----e-~~~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~p~~----~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~ 145 (478)
+ +-..++..-...+.| +.|..|.-.++|++++...+++. .. ....+.|..+|.|+-|.|+.+|+.||+
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 1 122344445566667 47999999999999999877643 22 256799999999999999999999999
Q ss_pred HHhhhC
Q 011744 146 EIEENS 151 (478)
Q Consensus 146 ~i~~~~ 151 (478)
.+....
T Consensus 668 tfl~~~ 673 (1387)
T KOG1517|consen 668 TFLSNG 673 (1387)
T ss_pred HHhccc
Confidence 877654
No 104
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.81 E-value=0.0032 Score=49.31 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCC
Q 011744 97 VRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECT 174 (478)
Q Consensus 97 VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~ 174 (478)
-||-+.+++..+...-++.+.. ..+++.+..++.|+|+.||..|+.+++.+.+...+..+..+..+|..|.+...+++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4777888888776544433221 25778888899999999999999999999776543333333444444444433333
No 105
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=1.2 Score=49.19 Aligned_cols=295 Identities=14% Similarity=0.187 Sum_probs=160.2
Q ss_pred hHHHHHHHHhhcCCCC------hHHHHHHHHHHH-HHHhhcccccccccHHHHHHHhhcCCChhhHHH-HHHHHHHHhhh
Q 011744 79 TEYLCDPLQRCLKDDD------PYVRKTAAICVA-KLYDINAELVEDRGFLESLKDLISDNNPMVVAN-AVAALAEIEEN 150 (478)
Q Consensus 79 ~~~l~~~i~~~l~~~~------~~VRk~A~~al~-~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~-a~~~l~~i~~~ 150 (478)
+..++|.+.+.-.... .-.|+.-..... ..+...|..+.. .+.+.+..+..+.|.++..- .+..|..+..-
T Consensus 565 AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~-~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~ 643 (1176)
T KOG1248|consen 565 AKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVG-SLKDSAGELASDLDESVASFKTLSLLDLLIAL 643 (1176)
T ss_pred hhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHH-HHHHHHHhHhccchhhhhhHHHHHHHHHHHhh
Confidence 3345566666555433 234555555555 233344543332 45666666777776555422 22222222211
Q ss_pred CCCCcccccHHHHHHHH---Hhccc-CChhhHHHHHHHHhhccCCCh------HHHHHHHHHhhhhhcCCChHHHHHHHH
Q 011744 151 SSRPIFEITSHTLSKLL---TALNE-CTEWGQVFILDALSRYKAADA------REAENIVERVTPRLQHANCAVVLSAVK 220 (478)
Q Consensus 151 ~~~~~~~~~~~~~~~Ll---~~l~~-~~~~~q~~ll~~l~~~~~~~~------~~~~~~l~~l~~~l~~~~~~V~~ea~~ 220 (478)
.+..- ...+.++. ..... .++-.|-+..++|....+... .....+.+.+.+-.++.....+.+..+
T Consensus 644 a~~~~----e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~ 719 (1176)
T KOG1248|consen 644 APVQT----ESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLK 719 (1176)
T ss_pred hcccc----chhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 11000 01122222 11112 356778888888877665421 233456677777777766666666555
Q ss_pred HHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHH--hhC------c--cchhhccceeeec-cCC
Q 011744 221 MILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIV--QRR------P--TILAHEIKVFFCK-YND 288 (478)
Q Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~--~~~------~--~~~~~~~~~~~~l-~~d 288 (478)
++-.+.+..+ .+...-+ .+.++-++-+++ -+...|..|.+.|..++ +.. | ..+++++..+... -.|
T Consensus 720 ~L~~L~~~~~-~e~~~~i-~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd 797 (1176)
T KOG1248|consen 720 CLKRLLKLLS-AEHCDLI-PKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD 797 (1176)
T ss_pred HHHHHHHhcc-HHHHHHH-HHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc
Confidence 5544433222 1222222 222332221223 23446777777777777 221 2 2455666655432 233
Q ss_pred ChhHHHH---HHHHH----HHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchh-----hHHHHHHHHHHH
Q 011744 289 PIYVKME---KLEIM----IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER-----AAERCISVLLEL 356 (478)
Q Consensus 289 d~~ir~~---al~lL----~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~-----~~~~~i~~ll~l 356 (478)
..-++.. |+..+ .+..+......+++.+-.|+....+++++.+|.-|..++..+|. .-+..+..++.+
T Consensus 798 ~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~l 877 (1176)
T KOG1248|consen 798 STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLAL 877 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHH
Confidence 2222222 22222 12446667788888888999999999999999999999999863 234567777777
Q ss_pred hcccchhHHHHHHHHHHHHHhhCC
Q 011744 357 IKIKVNYVVQEAIIVIKDIFRRYP 380 (478)
Q Consensus 357 l~~~~~~v~~~~~~~l~~i~~~~~ 380 (478)
..+...+++..+-..+..+++++.
T Consensus 878 s~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 878 SHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhC
Confidence 777777888877777777776643
No 106
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.77 E-value=0.021 Score=60.59 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=87.4
Q ss_pred CChhHHHHHHHHHHHhccc----Cc--------hHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHh
Q 011744 21 ENLELKKLVYLYLINYAKS----QP--------DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQR 88 (478)
Q Consensus 21 ~~~~~Krl~yl~l~~~~~~----~~--------e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~ 88 (478)
++..++.-+.+++..+.+. .+ +..--....+.+..+..+...+-++|++|||++.+..+..+.|.+.
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~- 487 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE- 487 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-
Confidence 3556667777777765431 11 2222233444555566788889999999999999999999777776
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhc--CCChhhHHHHHHHHHHH
Q 011744 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS--DNNPMVVANAVAALAEI 147 (478)
Q Consensus 89 ~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~--d~~~~V~~~a~~~l~~i 147 (478)
.-...++++|..|+.|+.++...+|+.+. +.+.+.+. +.++.||.+|+.++...
T Consensus 488 ~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-----~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 488 GAEPLSTFIRLAAILALRNLAKRDPRKVQ-----EVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 22446789999999999999888888654 56666554 47788999999888774
No 107
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.70 E-value=0.016 Score=53.04 Aligned_cols=91 Identities=25% Similarity=0.354 Sum_probs=76.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHhhcccccccccHHHH
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~--~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~ 124 (478)
+||+|-+.+..+...+|.-+-..+|.+.+|.-++. +.+.|.+ ++|+||-.|+.||+.|..- +.++.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~----L~k~L~d~~E~pMVRhEaAeALGaIa~e--------~~~~v 255 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPS----LIKVLLDETEHPMVRHEAAEALGAIADE--------DCVEV 255 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHH----HHHHHHhhhcchHHHHHHHHHHHhhcCH--------HHHHH
Confidence 48999999999999999999999999999988877 5555544 8999999999999988642 46789
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHhh
Q 011744 125 LKDLISDNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 125 l~~lL~d~~~~V~~~a~~~l~~i~~ 149 (478)
|...+.|+++.|+.++..+|.-.--
T Consensus 256 L~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888855433
No 108
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=1.2 Score=50.67 Aligned_cols=195 Identities=12% Similarity=0.110 Sum_probs=114.2
Q ss_pred HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChH--HHHHHHHHhhh-HHHHhhcCChhHHHHHHHHHHHHHhhCccc
Q 011744 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTD--VVRNLCKKMAP-PLVTLLSAEPEIQYVALRNINLIVQRRPTI 274 (478)
Q Consensus 198 ~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~--~~~~~~~~~~~-~l~~ll~~~~~ir~~aL~~l~~l~~~~~~~ 274 (478)
.+++.+..-|.+.+..++.+|+.+++.++. ++. ...+. ..+-. .|.++.....++|..+++....+...+|+.
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~---~~~~~l~~~~-~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFS---DKDSQLSETY-DDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHh---cchhhhcccc-hHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence 344444445667899999999999998752 221 11000 01112 223444568899999999999999988865
Q ss_pred hhhcccee-eeccCCChhHHHHHHHHHHHhcCccc----HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhc-c------
Q 011744 275 LAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRN----IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK-L------ 342 (478)
Q Consensus 275 ~~~~~~~~-~~l~~dd~~ir~~al~lL~~l~~~~n----~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~-~------ 342 (478)
........ .+..+-|+.+|.+..-++....-..- +..++..+.+-++|..+.+|..++..+..+=.+ |
T Consensus 335 ~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~ 414 (1266)
T KOG1525|consen 335 AKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAG 414 (1266)
T ss_pred hhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 44322111 11123345555544443322211111 111444555567788899999999988776664 1
Q ss_pred ----hhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCC
Q 011744 343 ----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDT 396 (478)
Q Consensus 343 ----~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~ 396 (478)
.+...|+-+.++.++-..+-..+.-+-..+.+.+..++---+..+..+++.+..
T Consensus 415 ~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~ 472 (1266)
T KOG1525|consen 415 GKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAG 472 (1266)
T ss_pred cccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Confidence 246689999999998888655553333345555554443333446666665543
No 109
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=96.68 E-value=0.029 Score=50.01 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=63.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhH--HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHH
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE--YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~--~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~ 124 (478)
-.+.+.+-..+++..+|..|++.+..+-...+++ ..+|.+..+..|+++.+|++|...+..++.++|+.+.. .+.+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~-~~~~g 87 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES-RYSEG 87 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH-HHHHH
Confidence 3456667778999999999999999875544444 36788999999999999999999999999999988764 44444
Q ss_pred HHH
Q 011744 125 LKD 127 (478)
Q Consensus 125 l~~ 127 (478)
+..
T Consensus 88 i~~ 90 (187)
T PF12830_consen 88 IRL 90 (187)
T ss_pred HHH
Confidence 443
No 110
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.58 E-value=0.023 Score=58.54 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=99.9
Q ss_pred CChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC-----hhhhhH-------HHHHHHHh
Q 011744 21 ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-----VDKITE-------YLCDPLQR 88 (478)
Q Consensus 21 ~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~-----~~e~~~-------~l~~~i~~ 88 (478)
++..--|-.-+++..+.+-.|.+.+---+.+.+-|++..-..|+.-+...+|+. .++|.+ .++.-+..
T Consensus 274 ~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~E 353 (1128)
T COG5098 274 PDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVE 353 (1128)
T ss_pred ccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHH
Confidence 444443444566666777778777777788889999999999999999999873 455555 46677778
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhccccccc-ccHHHHHHHhhcCCChhhHHHHHHHHHHHhh
Q 011744 89 CLKDDDPYVRKTAAICVAKLYDINAELVED-RGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 89 ~l~~~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 149 (478)
-+.|.+||+|-||...+.+++..+...... ..+...+...+.|++..|+.+|+.++..+.-
T Consensus 354 Rl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 354 RLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 889999999999999999999865433221 2567778889999999999999999987654
No 111
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.55 E-value=0.063 Score=57.93 Aligned_cols=193 Identities=18% Similarity=0.197 Sum_probs=133.0
Q ss_pred hhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc-ccccc-ccHH-HHHHHhhcCCChhhHHHHHHHHHHHhhhCCC
Q 011744 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVED-RGFL-ESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (478)
Q Consensus 77 e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p-~~~~~-~~~~-~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~ 153 (478)
++...+-+.+...+.|+++-=|+.|+..+..+....+ +.... .+.. ..+.-.+.|.|-.|...|+..+..|+...+.
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 4555567788899999999999999999999887554 22111 1222 3334466899999999999999999988765
Q ss_pred CcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChH
Q 011744 154 PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTD 233 (478)
Q Consensus 154 ~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~ 233 (478)
....+....+..++..+.+--+...-.++.++..+.... ....+.+.+...+.+.++.+.-++...+..+....+...
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~--~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST--PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 545555566667777666555555555555555554322 234677888889999999999999888877654333111
Q ss_pred HHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhC
Q 011744 234 VVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR 271 (478)
Q Consensus 234 ~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~ 271 (478)
.-+..++.+++.++...+ .+.++|-+|++++..+...+
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 112223466777777775 68999999999998886543
No 112
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.44 E-value=0.22 Score=47.97 Aligned_cols=94 Identities=11% Similarity=0.029 Sum_probs=64.8
Q ss_pred eccCCChhHHHHHHHHHHH--hcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchh-------------hHHH
Q 011744 284 CKYNDPIYVKMEKLEIMIK--LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER-------------AAER 348 (478)
Q Consensus 284 ~l~~dd~~ir~~al~lL~~--l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~-------------~~~~ 348 (478)
...+++..||..+++.|.. +.+.+.+.+-++.+...+...+..++..+++++..+...|+. ....
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~ 114 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKS 114 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhH
Confidence 3456667888888888744 447777777777777777666778888888888888877641 1234
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 011744 349 CISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (478)
Q Consensus 349 ~i~~ll~ll~~~~~~v~~~~~~~l~~i~~ 377 (478)
+.+.+.+.+...++.+...+++++.+++-
T Consensus 115 l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 115 LLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 56666666666666666666777766653
No 113
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.33 Score=50.50 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=126.3
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhh----HHHHhhc-CChhHHHHHHHHHHHHHhhC----cc-c
Q 011744 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAP----PLVTLLS-AEPEIQYVALRNINLIVQRR----PT-I 274 (478)
Q Consensus 205 ~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~----~l~~ll~-~~~~ir~~aL~~l~~l~~~~----~~-~ 274 (478)
..|+-+|+.|+..|+.++..+.| +.+|++...-++++.. -+..||+ .-|.+|..|..-+.++...+ |. +
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP-~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFP-IRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhcc-CCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 45678899999999999999987 4566654433333333 3456776 45899999999999988765 32 3
Q ss_pred hhhccc-eeeeccCC-ChhHHHHHHHHHHHhc-Ccc---cHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHh-cchhhHH
Q 011744 275 LAHEIK-VFFCKYND-PIYVKMEKLEIMIKLA-SDR---NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAI-KLERAAE 347 (478)
Q Consensus 275 ~~~~~~-~~~~l~~d-d~~ir~~al~lL~~l~-~~~---n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~-~~~~~~~ 347 (478)
+..-+. ++.-+..| ..++|....+-|..+. |+. -.+.+++.+-.-+.|....+|...+.-|..+-. ++.+..+
T Consensus 260 ~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~ 339 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWK 339 (1005)
T ss_pred HHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhc
Confidence 333332 33323333 3689988888776654 332 356677766666788888999888877766543 2222111
Q ss_pred -HHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhccc
Q 011744 348 -RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYA 414 (478)
Q Consensus 348 -~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~ 414 (478)
--.|.++.-|...+..+....+..+....-....--++..+++...++. ++.+.....-.+|+.+
T Consensus 340 I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv~~--n~~A~~rf~~~l~~~~ 405 (1005)
T KOG1949|consen 340 ICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLVQM--NHAAARRFYQYLHEHT 405 (1005)
T ss_pred cccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHcc--CHHHHHHHHHHhcccc
Confidence 1145666666666655555444443332211111124455665555553 4556666677777776
No 114
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.24 E-value=0.73 Score=45.35 Aligned_cols=262 Identities=14% Similarity=0.139 Sum_probs=148.6
Q ss_pred hHHHHHHhccC-CChhHHHHHHHHHHHhcccCc--------hHHHHHHHHHH--hhcCCCCH----HHHHHHHHHhcCCC
Q 011744 10 LFTDVVNCMQT-ENLELKKLVYLYLINYAKSQP--------DLAILAVNTFV--KDSQDPNP----LIRALAVRTMGCIR 74 (478)
Q Consensus 10 ~~~~ii~l~~s-~~~~~Krl~yl~l~~~~~~~~--------e~~~l~in~l~--kdL~~~n~----~vr~~AL~~l~~i~ 74 (478)
+.++.++++++ -++..+-+.+-.+.-.++++- .+..-.++-++ |++.++.+ .-|+.-+..+-..+
T Consensus 224 l~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG 303 (604)
T KOG4500|consen 224 LVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG 303 (604)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC
Confidence 34566666644 466666666666555544431 12333444454 46666544 33444444444455
Q ss_pred hhhhh-----HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhc-----CCChhhHHHHH
Q 011744 75 VDKIT-----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLIS-----DNNPMVVANAV 141 (478)
Q Consensus 75 ~~e~~-----~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~-----d~~~~V~~~a~ 141 (478)
+.+|- +.+...+..++.+.+....-.++++++++.|.+... ++ .++++.+..++. |.|..++.+++
T Consensus 304 DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~l 382 (604)
T KOG4500|consen 304 DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACL 382 (604)
T ss_pred chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHH
Confidence 55432 237777899999999999999999999999977643 33 377788887763 45666788999
Q ss_pred HHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH------HHHHHhhhhhcCCChH-H
Q 011744 142 AALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE------NIVERVTPRLQHANCA-V 214 (478)
Q Consensus 142 ~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~------~~l~~l~~~l~~~~~~-V 214 (478)
++|..+.-..+....-...+....++..+.-..|-.+-+++..+++....-+.-+. +.++.+..--++++.+ |
T Consensus 383 sALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv 462 (604)
T KOG4500|consen 383 SALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGV 462 (604)
T ss_pred HHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchh
Confidence 99987654332211112224556666666655666666666666554422111111 3455555555677765 8
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc
Q 011744 215 VLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP 272 (478)
Q Consensus 215 ~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~ 272 (478)
.-|.-+++..+..+....+....+.+ ..+..++..+. ..-+.+-.|+-++..+...++
T Consensus 463 ~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl 522 (604)
T KOG4500|consen 463 AGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYL 522 (604)
T ss_pred hhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhc
Confidence 88888877765432111111111111 12233444443 345666666666666665554
No 115
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=1.1 Score=51.98 Aligned_cols=225 Identities=18% Similarity=0.196 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----ChhhhhHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHhhcccccc
Q 011744 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVDKITEYLCDPL-QRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (478)
Q Consensus 43 ~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~e~~~~l~~~i-~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~ 117 (478)
.-.+..--+..++.++||..|+.|-.+++.+ +.+.++..+.... .++....+|+-|---.++++.+++.......
T Consensus 873 v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 873 VRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 4445556678899999999999988877764 3333334444334 4444446777777777888888775333222
Q ss_pred cc---cHHHHHHHhhcCCCh-hhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhcc----
Q 011744 118 DR---GFLESLKDLISDNNP-MVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---- 189 (478)
Q Consensus 118 ~~---~~~~~l~~lL~d~~~-~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~---- 189 (478)
.- .-+..+..+-.|+++ .|+..++.++..+.....+-++.+..+.+.-.+..+ -+.|...+.+.+..++..
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lL-ls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLL-LSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHc-CCCCcchhhhhhhhccccccch
Confidence 11 223456666677665 889999999998887765545554444443333332 223333333333332221
Q ss_pred --------------CCChHHH-----HHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhh
Q 011744 190 --------------AADAREA-----ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL 250 (478)
Q Consensus 190 --------------~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll 250 (478)
+...++. ...+-...-++.++++.+..++++++-++.- + .|-.+. .+..+..+..++
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhl-F-apr~~n--~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHL-F-APRHVN--LDSLVLQLCSLL 1107 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHh-h-cchhcc--HHHHHHHHHHHh
Confidence 1111000 0111122224556788888888888866531 1 221111 134566677777
Q ss_pred cC-ChhHHHHHHHHHHHHHhhCc
Q 011744 251 SA-EPEIQYVALRNINLIVQRRP 272 (478)
Q Consensus 251 ~~-~~~ir~~aL~~l~~l~~~~~ 272 (478)
++ .--.|.+.+..+..++++.-
T Consensus 1108 ~s~~~i~r~~~~~clrql~~Re~ 1130 (2067)
T KOG1822|consen 1108 SSSYLILRRASFSCLRQLVQREA 1130 (2067)
T ss_pred cchhhhhhhhHHhhhhHHhHHHH
Confidence 63 44466777777777776643
No 116
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.19 E-value=0.17 Score=48.86 Aligned_cols=106 Identities=21% Similarity=0.309 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhcCC--ChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc-cccc----
Q 011744 45 ILAVNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVE---- 117 (478)
Q Consensus 45 ~l~in~l~kdL~~~n~~vr~~AL~~l~~i--~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p-~~~~---- 117 (478)
.+.-+-+...++++++.+|..|++++|-. -+.+.+...++.+...+...++.||-.|+.++.-+...++ +.++
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 44556667899999999999999988865 4778888888888888877799999999999999887654 2221
Q ss_pred ------cccHHHHHHHhhcCCChhhHHHHHHHHHHHhhh
Q 011744 118 ------DRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 118 ------~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 150 (478)
...+.+.+.+.+.+.++.++..|+..+..+.-.
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 124667788888888999999999888887543
No 117
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.13 E-value=0.057 Score=55.71 Aligned_cols=138 Identities=22% Similarity=0.230 Sum_probs=100.1
Q ss_pred HHHHHhccC----CChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcC-CCCHHHHHHHHHHhcCCC--hhhhhHHHHH
Q 011744 12 TDVVNCMQT----ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKITEYLCD 84 (478)
Q Consensus 12 ~~ii~l~~s----~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~-~~n~~vr~~AL~~l~~i~--~~e~~~~l~~ 84 (478)
|-+....++ +|..+.+.+|+.+..+.--..+...--.+.+..-+. +|+|.+|+.|.-.+|.+. -...++.--.
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~ 974 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTH 974 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHH
Confidence 445556555 789999999998887654444443333445555554 899999999998888753 2234444445
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 85 ~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
.+.+-+.|.+..|||.+.+++..+.-...=.+. +..+.+..+|.|+|.++.--|=..+.+++.++
T Consensus 975 yLyrrL~De~~~V~rtclmti~fLilagq~KVK--Gqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 975 YLYRRLGDEDADVRRTCLMTIHFLILAGQLKVK--GQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHccceeec--cchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 577888999999999999998876554332233 66788899999999998888888888888765
No 118
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.09 E-value=0.012 Score=35.30 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHhh
Q 011744 121 FLESLKDLISDNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 121 ~~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 149 (478)
++|.+.++++|+++.||.+|+.+++.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35888999999999999999999999875
No 119
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=2.9 Score=45.46 Aligned_cols=113 Identities=18% Similarity=0.232 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHHhcCCCh---------hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh---hcccccccccHHH
Q 011744 56 QDPNPLIRALAVRTMGCIRV---------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD---INAELVEDRGFLE 123 (478)
Q Consensus 56 ~~~n~~vr~~AL~~l~~i~~---------~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~---~~p~~~~~~~~~~ 123 (478)
...|+.-+--||+.+|++.+ .+|-..+.+.|.-.++++..+.|.+|+..+.++.. ++|.... ...+
T Consensus 428 ~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale 505 (1010)
T KOG1991|consen 428 PNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALE 505 (1010)
T ss_pred CccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHH
Confidence 34677788899999998752 13334567888888899999999999999998874 2344333 4556
Q ss_pred HHHHhhc-CCChhhHHHHHHHHHHHhhhCCC--C-cccccHHHHHHHHHhc
Q 011744 124 SLKDLIS-DNNPMVVANAVAALAEIEENSSR--P-IFEITSHTLSKLLTAL 170 (478)
Q Consensus 124 ~l~~lL~-d~~~~V~~~a~~~l~~i~~~~~~--~-~~~~~~~~~~~Ll~~l 170 (478)
...++|. |.+..|+..|+.||..+..+... . .-..+++....|++..
T Consensus 506 ~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 506 LTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred HHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH
Confidence 6667666 89999999999999876655421 1 2223344455555443
No 120
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=1.7 Score=46.37 Aligned_cols=176 Identities=17% Similarity=0.253 Sum_probs=110.9
Q ss_pred Hhhhhhc-CCChHHHHHHHHHHHHhhhhcCChHHHHHH-HHHhhhHHHHhhc--CChhHHHHHHHHHHHHHhhCccc---
Q 011744 202 RVTPRLQ-HANCAVVLSAVKMILQQMELITSTDVVRNL-CKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTI--- 274 (478)
Q Consensus 202 ~l~~~l~-~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~--~~~~ir~~aL~~l~~l~~~~~~~--- 274 (478)
.++.-++ +++++..++|+.-++...- +++++.+..+ ++.++|.|+.|++ .+.++--.|.++|..++...|..
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3333444 3488888999888877653 3565655543 5678999999997 46789999999999999998852
Q ss_pred -hhhc-cceeee-ccCCC-hhHHHHHHHHHHHhcCcccHHHH----HHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhH
Q 011744 275 -LAHE-IKVFFC-KYNDP-IYVKMEKLEIMIKLASDRNIDQV----LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA 346 (478)
Q Consensus 275 -~~~~-~~~~~~-l~~dd-~~ir~~al~lL~~l~~~~n~~~I----v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~ 346 (478)
+..| +++|.- |..-. ..+...+|+.|-.+....+..-+ +...+.|+.--....+|.++....+++.+.+++.
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~ 329 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDE 329 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 2333 444321 11111 34666777777766655443221 2223334433345677888877788887765432
Q ss_pred ----HHHHHHHHHHhcccchhHHHHHHHHHHHHHhh
Q 011744 347 ----ERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (478)
Q Consensus 347 ----~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~ 378 (478)
-..++.+..+|++.++.+.+.+...+..++.+
T Consensus 330 f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 330 FHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred chHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 23456777888888877766666666666543
No 121
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.98 E-value=0.51 Score=46.79 Aligned_cols=144 Identities=17% Similarity=0.230 Sum_probs=100.6
Q ss_pred CCchhhH--HHHHHhccCCChhHHHHHHHHHHHhcccCchHH--------HHHHHHHHhhcCCCCHHHHHHHHHHhcCC-
Q 011744 5 KDVSSLF--TDVVNCMQTENLELKKLVYLYLINYAKSQPDLA--------ILAVNTFVKDSQDPNPLIRALAVRTMGCI- 73 (478)
Q Consensus 5 ~d~~~~~--~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~--------~l~in~l~kdL~~~n~~vr~~AL~~l~~i- 73 (478)
+|..+.+ ..+...+-+++.+++-.||-.+..+......+. .+++-++.+|. +++.-|..||+.+-.+
T Consensus 19 ~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~--~~~~ER~QALkliR~~l 96 (371)
T PF14664_consen 19 YDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDN--KNDVEREQALKLIRAFL 96 (371)
T ss_pred hhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccC--CChHHHHHHHHHHHHHH
Confidence 4444433 344434555559999999999887665543321 12333445544 4678888999876543
Q ss_pred ----ChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhh
Q 011744 74 ----RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 74 ----~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 149 (478)
+..++-..++..+..+..+++...|..|..+++.+.-.+|+.+-..+=+..+.+.+.|.......+.+.++..+..
T Consensus 97 ~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 97 EIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred HhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 3456677888889999999999999999999999999999987544445777777766665666666777776655
Q ss_pred h
Q 011744 150 N 150 (478)
Q Consensus 150 ~ 150 (478)
.
T Consensus 177 ~ 177 (371)
T PF14664_consen 177 S 177 (371)
T ss_pred C
Confidence 4
No 122
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.071 Score=53.84 Aligned_cols=125 Identities=20% Similarity=0.140 Sum_probs=66.0
Q ss_pred HHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHH-HhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhc-CC
Q 011744 15 VNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTF-VKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL-KD 92 (478)
Q Consensus 15 i~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l-~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l-~~ 92 (478)
.+++.+.+...|--|-+.+..-.--..... ++.++ .-..++.|..||..|.-+|+-++..+ +..++...++| .+
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GTgn~~--vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--~~~lv~tvelLs~s 597 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGTGNLG--VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--RDLLVGTVELLSES 597 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcCCcch--hHhhhheeecccCchHHHHHHHHheeeeEecC--cchhhHHHHHhhhc
Confidence 345666666666655554432111111111 12333 23456677777777777777665332 11222233333 34
Q ss_pred CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 011744 93 DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (478)
Q Consensus 93 ~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 147 (478)
.|+.||--.+.+++-.+....+. ...+.|..+..|.+..|+.+|..++.-|
T Consensus 598 hN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 598 HNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred cchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 67777777777766433322221 2446667777777777777777666544
No 123
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=4.4 Score=45.10 Aligned_cols=208 Identities=13% Similarity=0.193 Sum_probs=127.1
Q ss_pred ChhhHHHHHHHHhhccCCCh-HHHHHHHHHhhh-hhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc
Q 011744 174 TEWGQVFILDALSRYKAADA-REAENIVERVTP-RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS 251 (478)
Q Consensus 174 ~~~~q~~ll~~l~~~~~~~~-~~~~~~l~~l~~-~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 251 (478)
.++.+..+|..+....+-.+ +....+. .+.+ ..+++++.|...+-+++..+.+..+-..+..+-++.+-+.+..-..
T Consensus 629 ~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 629 ASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred hhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh
Confidence 34666666666655543322 2223333 3333 3455688999999988887754311122333333333343333333
Q ss_pred -CChhHHHHHHHHHHHHHhhCc----cchhhccc-eeeeccCCChhHHHHHHHHHHHhcC--c------ccHHHHHHHHH
Q 011744 252 -AEPEIQYVALRNINLIVQRRP----TILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLAS--D------RNIDQVLLEFK 317 (478)
Q Consensus 252 -~~~~ir~~aL~~l~~l~~~~~----~~~~~~~~-~~~~l~~dd~~ir~~al~lL~~l~~--~------~n~~~Iv~~L~ 317 (478)
...-.|+..+.++..+.+..| +.+-..++ .+.+..+-+..-|+-|.++|+.|++ . +-...++++++
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl 787 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL 787 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 345688888888888888777 22223343 3344466677899999999999881 1 11345677666
Q ss_pred Hhhhhc--CHHH--HHHHHHHHHHHHhcch-----hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcc
Q 011744 318 EYATEV--DVDF--VRKAVRAIGRCAIKLE-----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT 382 (478)
Q Consensus 318 ~~l~~~--d~~~--r~~~v~~i~~l~~~~~-----~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~ 382 (478)
.-+... .... +..-+-+++.+...+. .....+++++.-++..+...++..++.++.-++...|+.
T Consensus 788 ~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 788 SIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 555432 2222 1111566666666552 345678888888899999999999999999999888864
No 124
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.52 E-value=1.3 Score=45.90 Aligned_cols=173 Identities=12% Similarity=0.095 Sum_probs=108.8
Q ss_pred hhcCCCCHHHHHHHHHHhcCCC----------hhhhhHHHHHH-HHhhcCCCChHHHHHHHHHHHHHHhh----cccccc
Q 011744 53 KDSQDPNPLIRALAVRTMGCIR----------VDKITEYLCDP-LQRCLKDDDPYVRKTAAICVAKLYDI----NAELVE 117 (478)
Q Consensus 53 kdL~~~n~~vr~~AL~~l~~i~----------~~e~~~~l~~~-i~~~l~~~~~~VRk~A~~al~~i~~~----~p~~~~ 117 (478)
..++...|..|.++++-..-.. -.++.+..... ........+..++.+|++|+..+.+. ... ..
T Consensus 338 ~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~ 416 (678)
T KOG1293|consen 338 ASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LK 416 (678)
T ss_pred HHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-Cc
Confidence 3556677778877777433221 01222222222 22223457889999999998876653 122 23
Q ss_pred cccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCccc-ccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChH-H
Q 011744 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR-E 195 (478)
Q Consensus 118 ~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~-~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~-~ 195 (478)
+.+..+.+.+++.|++.+|+.+++.+++.+.-+-++..-. +..+.+..+.+.+.++++-...+.+++|+...-..++ +
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 3467899999999999999999999998876543221111 1224567777777788888888888888765433322 2
Q ss_pred HHHHH-----HHhhhhhcCCChHHHHHHHHHHHHhh
Q 011744 196 AENIV-----ERVTPRLQHANCAVVLSAVKMILQQM 226 (478)
Q Consensus 196 ~~~~l-----~~l~~~l~~~~~~V~~ea~~~i~~~~ 226 (478)
....+ +.+..+.++.+++|.-.|..++-++.
T Consensus 497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 22222 23445668889999988888777653
No 125
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.52 E-value=0.12 Score=40.07 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=35.6
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhhcc-cccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 86 LQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 86 i~~~l~~~~~~VRk~A~~al~~i~~~~p-~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
+..-+.|+.+.||-.|..-+.++.+... .....+.....+...|.|+|+-|-.+|+..+..++...
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 3444455555666666666666555433 21211234455555666666666666666666665543
No 126
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.47 E-value=1.1 Score=47.62 Aligned_cols=220 Identities=11% Similarity=0.177 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC----CChh
Q 011744 60 PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD----NNPM 135 (478)
Q Consensus 60 ~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d----~~~~ 135 (478)
+..|..=+.+++..++++-+..+...|.+ ..-++..+..++..+....+ .|+ ...++.+..++.+ +++.
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~--~~~~~~ea~~~~~~~~~~~~-~Pt----~~~l~~l~~l~~~~~~~~~~~ 412 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKN--KKITPLEAAQLLAVLPHTAR-YPT----EEILKALFELAESPEVQKQPY 412 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhh-cCC----HHHHHHHHHHhcCccccccHH
Confidence 56777778899999999888885444444 12233334444444443332 333 1355666666654 4566
Q ss_pred hHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHH
Q 011744 136 VVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVV 215 (478)
Q Consensus 136 V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~ 215 (478)
+..+|+.+++.+....+...-. +.+.. .+ +....+.+.+....+..+...+
T Consensus 413 l~~sa~l~~~~lv~~~c~~~~~---------------~~~~~----~~----------~~~~~l~~~l~~~~~~~~~~~~ 463 (574)
T smart00638 413 LRESALLAYGSLVRRYCVNTPS---------------CPDFV----LE----------ELLKYLHELLQQAVSKGDEEEI 463 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC---------------CChhh----HH----------HHHHHHHHHHHHHHhcCCchhe
Confidence 7788888887766543321100 00000 00 0000111222222233444455
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc----CChhHHHHHHHHHHHHHhhCccchhhcc-ceeeeccCCCh
Q 011744 216 LSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS----AEPEIQYVALRNINLIVQRRPTILAHEI-KVFFCKYNDPI 290 (478)
Q Consensus 216 ~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~----~~~~ir~~aL~~l~~l~~~~~~~~~~~~-~~~~~l~~dd~ 290 (478)
.-++++++++ +.|..+. .+..++. .++.+|..|+.+|.+++...|+.+++.+ ++|. -..++.
T Consensus 464 ~~~LkaLGN~----g~~~~i~--------~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~-n~~e~~ 530 (574)
T smart00638 464 QLYLKALGNA----GHPSSIK--------VLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL-NRAEPP 530 (574)
T ss_pred eeHHHhhhcc----CChhHHH--------HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc-CCCCCh
Confidence 5667777763 4554432 2222222 2467999999999999888888777653 3432 245668
Q ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHhh-hhcCHHHHHHH
Q 011744 291 YVKMEKLEIMIKLASDRNIDQVLLEFKEYA-TEVDVDFVRKA 331 (478)
Q Consensus 291 ~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l-~~~d~~~r~~~ 331 (478)
.+|..|..+|... +++. ..+..+..++ ++.+.+++.-+
T Consensus 531 EvRiaA~~~lm~t-~P~~--~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 531 EVRMAAVLVLMET-KPSV--ALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred HHHHHHHHHHHhc-CCCH--HHHHHHHHHHhhcCcHHHHHHh
Confidence 8999999888864 4432 2333444443 24455555433
No 127
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.07 Score=55.48 Aligned_cols=121 Identities=21% Similarity=0.244 Sum_probs=84.3
Q ss_pred ccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----ChhhhhHHHHHHHHhhcCCC
Q 011744 18 MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVDKITEYLCDPLQRCLKDD 93 (478)
Q Consensus 18 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~e~~~~l~~~i~~~l~~~ 93 (478)
.+..|-.+||.+-+++.-..-.+|+.+.-.+ .---.|-||+||.-|.-+||-- +..+-+.. +..+..|+
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp~~~~s~V---~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~l----Lepl~~D~ 636 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDPEQLPSTV---SLLSESYNPHVRYGAAMALGIACAGTGLKEAINL----LEPLTSDP 636 (929)
T ss_pred ccccchHHHHHHHHHheeeEecChhhchHHH---HHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHH----HhhhhcCh
Confidence 4678999999999999999999999753222 2223578999998888877643 44555544 55566799
Q ss_pred ChHHHHHHHHHHHHHHhh-ccccccc-ccHHHHHHHhhcCCCh--hhHHHHHHHHH
Q 011744 94 DPYVRKTAAICVAKLYDI-NAELVED-RGFLESLKDLISDNNP--MVVANAVAALA 145 (478)
Q Consensus 94 ~~~VRk~A~~al~~i~~~-~p~~~~~-~~~~~~l~~lL~d~~~--~V~~~a~~~l~ 145 (478)
..+||+-|.+++.-|.-+ .+++.+. .+|...+.+.+.|++. .+...|+.+=+
T Consensus 637 ~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqG 692 (929)
T KOG2062|consen 637 VDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQG 692 (929)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 999999999998887544 3444332 2566777777777654 44556654443
No 128
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.71 Score=48.14 Aligned_cols=139 Identities=24% Similarity=0.228 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhcCC---Chhhh--------hHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhc
Q 011744 44 AILAVNTFVKDSQDPNPLIRALAVRTMGCI---RVDKI--------TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN 112 (478)
Q Consensus 44 ~~l~in~l~kdL~~~n~~vr~~AL~~l~~i---~~~e~--------~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~ 112 (478)
..|.-+-+-+.|+-+|-.||+.|+-.+-+. .+|+. .+.-...+.++|.|+-|.||..|+..+.|+....
T Consensus 172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 455566778999999999999999877653 34433 3334566889999999999999999999988765
Q ss_pred ccccccccHHHHHHH----hhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcc----cCChhhHHHHHHH
Q 011744 113 AELVEDRGFLESLKD----LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN----ECTEWGQVFILDA 184 (478)
Q Consensus 113 p~~~~~~~~~~~l~~----lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~----~~~~~~q~~ll~~ 184 (478)
=+.++..-+.+.+.. +-.|....|+.+.+..+..+.... ..++.+.+++..+. +..+-..+...++
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np------~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP------LSHPLLEQLLPALRYSLHDNSEKVRVAFVDM 325 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc------cchhHHHHHHHhcchhhhccchhHHHHHHHH
Confidence 444443222233322 335677789999999998886543 23456666666542 4445555555555
Q ss_pred Hhhc
Q 011744 185 LSRY 188 (478)
Q Consensus 185 l~~~ 188 (478)
|.++
T Consensus 326 ll~i 329 (1005)
T KOG1949|consen 326 LLKI 329 (1005)
T ss_pred HHHH
Confidence 5443
No 129
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.33 E-value=0.05 Score=58.33 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=79.4
Q ss_pred CChhHHHHHHHHHHHhccc--------------Cc----hHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHH
Q 011744 21 ENLELKKLVYLYLINYAKS--------------QP----DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (478)
Q Consensus 21 ~~~~~Krl~yl~l~~~~~~--------------~~----e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l 82 (478)
++..++.-+.++++.+.+. .. +..-...+.+.+..+..+...+-.+|++|||++.++.++.
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~- 525 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPV- 525 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHH-
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHH-
Confidence 4566777788877765422 11 1222334455555567888999999999999999888877
Q ss_pred HHHHHhhcCC---CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC--CChhhHHHHHHHHHHH
Q 011744 83 CDPLQRCLKD---DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD--NNPMVVANAVAALAEI 147 (478)
Q Consensus 83 ~~~i~~~l~~---~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d--~~~~V~~~a~~~l~~i 147 (478)
+...+.+ .+..+|..|+.|+.++...+|+.+. +.+.+.+.| .++.||.+|+.++...
T Consensus 526 ---l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~-----~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 526 ---LLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR-----EILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp ---HHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH-----HHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred ---HHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHH-----HHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 4444544 4889999999999999877886543 666666544 6688999998888774
No 130
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.21 E-value=1.9 Score=42.78 Aligned_cols=206 Identities=15% Similarity=0.197 Sum_probs=133.3
Q ss_pred HhhcCChhHHHHHHHHHHHHHhhCcc---chhhccceee--eccCC--ChhHHHHHHHHHHHhcCc-ccH----HHHHHH
Q 011744 248 TLLSAEPEIQYVALRNINLIVQRRPT---ILAHEIKVFF--CKYND--PIYVKMEKLEIMIKLASD-RNI----DQVLLE 315 (478)
Q Consensus 248 ~ll~~~~~ir~~aL~~l~~l~~~~~~---~~~~~~~~~~--~l~~d--d~~ir~~al~lL~~l~~~-~n~----~~Iv~~ 315 (478)
.+++++.++|-+|++.+-.+...... +.+-|++.|. ++..+ ...=|..|+.+.-.+.+- +.. ..++..
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 46676799999999999888875322 2344566553 33322 234477899998776543 122 468888
Q ss_pred HHHhhhhcCHHHHHHHHHHHHHHHhcchhhHH--HHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHH-----HH
Q 011744 316 FKEYATEVDVDFVRKAVRAIGRCAIKLERAAE--RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESI-----IA 388 (478)
Q Consensus 316 L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~--~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~-----i~ 388 (478)
+.....+.++.+|.-++..+++++-..|.-.. .-+.++.+.+.++.-.+.+.++..+..++ ++|+.|.++ ++
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~ 191 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLE 191 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHH
Confidence 88888888889999999999999988765322 22566666666643346666777777776 467766543 33
Q ss_pred HHHhhcCCC-----C-hh--hH----HHHHHHHhhcccCccC---CHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccC
Q 011744 389 TLCESLDTL-----D-EP--EA----KASMIWIIGEYAERID---NADELLESFLESFPEEPAQVQLQLLTATVKLFLKK 453 (478)
Q Consensus 389 ~L~~~l~~~-----~-~~--~~----~~~~~~ilGE~~~~~~---~~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~ 453 (478)
.++..+-+. . +. +- ..++.-++--....+. +...-++.+++.+...++++|.+++..+..++.-.
T Consensus 192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 444333222 1 11 11 2334455555544432 12256888888888889999999999999998654
Q ss_pred C
Q 011744 454 P 454 (478)
Q Consensus 454 ~ 454 (478)
+
T Consensus 272 ~ 272 (371)
T PF14664_consen 272 P 272 (371)
T ss_pred C
Confidence 3
No 131
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.05 E-value=0.24 Score=38.33 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=46.9
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHhcch---hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHH
Q 011744 313 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLE---RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIAT 389 (478)
Q Consensus 313 v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~---~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~ 389 (478)
.++.+.++.|+.+.+|...+..++++.++.. ......++.++..+++.++||--.++..+..+...+|+ .++..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---EVLPI 81 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---HHHHH
Confidence 3444555556666666666666666665433 23445666666667777777767777777766666554 34555
Q ss_pred HHhhc
Q 011744 390 LCESL 394 (478)
Q Consensus 390 L~~~l 394 (478)
|++..
T Consensus 82 L~~~y 86 (92)
T PF10363_consen 82 LLDEY 86 (92)
T ss_pred HHHHH
Confidence 55433
No 132
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.04 E-value=3.9 Score=44.46 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=91.7
Q ss_pred ChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCC-CCHHHHHHHHHHhcCCChh--hhhHHHHHHHHhhcCCCChHHH
Q 011744 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQD-PNPLIRALAVRTMGCIRVD--KITEYLCDPLQRCLKDDDPYVR 98 (478)
Q Consensus 22 ~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~-~n~~vr~~AL~~l~~i~~~--e~~~~l~~~i~~~l~~~~~~VR 98 (478)
...++-.|.+.+..+.=.+.+++.-.++.+.+.|+- +...+|..-.-+++.++.. -|++-.+|.|...|.|+++.||
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVR 1023 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVR 1023 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHH
Confidence 345666677766665555567777778889999973 4445666666677877765 4888899999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCC
Q 011744 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (478)
Q Consensus 99 k~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~ 153 (478)
|.++.-+.++.+..-=-....-|+..+. .+-|.++.++.-|=..+.++.+...+
T Consensus 1024 rqt~ilL~rLLq~~~vKw~G~Lf~Rf~l-~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1024 RQTIILLARLLQFGIVKWNGELFIRFML-ALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred HHHHHHHHHHHhhhhhhcchhhHHHHHH-HHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 9999999998764211011001222233 34588999999888888888776543
No 133
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=94.96 E-value=4 Score=39.88 Aligned_cols=217 Identities=12% Similarity=0.141 Sum_probs=112.9
Q ss_pred HhhcCChhHHHHHHHHHHHHHhhCccchhhccc-eeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhh----
Q 011744 248 TLLSAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATE---- 322 (478)
Q Consensus 248 ~ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~-~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~---- 322 (478)
.......--+..|-+.+.++-...|+.-..-+. .+.+..++|..||+.|+.=|..+|..++...+.+.|.+.+..
T Consensus 32 ~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~ 111 (460)
T KOG2213|consen 32 KAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLT 111 (460)
T ss_pred HHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHH
Confidence 344445556677777778877777765443333 334556778999999999999999888877776666555432
Q ss_pred --------cCHHHHHHHHHHHHH-HHhcch-----hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcch----H
Q 011744 323 --------VDVDFVRKAVRAIGR-CAIKLE-----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY----E 384 (478)
Q Consensus 323 --------~d~~~r~~~v~~i~~-l~~~~~-----~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~----~ 384 (478)
.|..+|...+.-|.. +...-+ +.-..+++-+...|.+ |..+-...+-+++.+....+ +
T Consensus 112 ~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~d----Vtgeef~lfm~~L~~lk~~~~k~~~ 187 (460)
T KOG2213|consen 112 GLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALED----VTGEEFTLFMDILASLKSLQTKAGE 187 (460)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhhhcccCCCCH
Confidence 355666655544421 111101 1112233333333333 22222333333333211111 1
Q ss_pred HHHHHHHhhc------C--CCChhhHHHHHHHHhhcccCccCC---HHHHHHHHhh-----cCCCCCHHHHHHHHHHHHH
Q 011744 385 SIIATLCESL------D--TLDEPEAKASMIWIIGEYAERIDN---ADELLESFLE-----SFPEEPAQVQLQLLTATVK 448 (478)
Q Consensus 385 ~~i~~L~~~l------~--~~~~~~~~~~~~~ilGE~~~~~~~---~~~~l~~l~~-----~~~~~~~~vk~~il~a~~K 448 (478)
.=+..|.+.. + +.+|++.....+.++-.-.+.+.. +..++..+.. .|.....+.|.-.|.+++-
T Consensus 188 a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAE 267 (460)
T KOG2213|consen 188 ARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAE 267 (460)
T ss_pred HHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHH
Confidence 1133333322 1 133566666666666554444432 2344444332 2444567888888888887
Q ss_pred HhccCCCcchHHHHHHHHHH
Q 011744 449 LFLKKPTEGPQQMIQVTLKY 468 (478)
Q Consensus 449 l~~~~~~~~~~~~~~~~l~~ 468 (478)
+..-..-+..++++..++++
T Consensus 268 Mss~ttaq~a~q~Lpsi~el 287 (460)
T KOG2213|consen 268 MSSYTTAQAARQMLPSIVEL 287 (460)
T ss_pred hCccchHHHHHHHHHHHHHH
Confidence 76544222345555555443
No 134
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.79 E-value=2.3 Score=43.61 Aligned_cols=122 Identities=24% Similarity=0.236 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHHhhcCC-CCHH-HHHHHHHHhcC-C-Ch---hhhhHHHHHHHHhhcCCCChHHHH
Q 011744 27 KLVYLYLINYAKSQPDLAILAVNTFVKDSQD-PNPL-IRALAVRTMGC-I-RV---DKITEYLCDPLQRCLKDDDPYVRK 99 (478)
Q Consensus 27 rl~yl~l~~~~~~~~e~~~l~in~l~kdL~~-~n~~-vr~~AL~~l~~-i-~~---~e~~~~l~~~i~~~l~~~~~~VRk 99 (478)
.++-+.-..+.+.=.+-..-++|++..-=++ .+|. +-..--+++.. . .. .+++...+..+.+.+.+++-.||+
T Consensus 30 ~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~ 109 (885)
T COG5218 30 SLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRK 109 (885)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHH
Confidence 3344444444444344455567766543321 2222 22222223332 1 23 357777788888888899999999
Q ss_pred HHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhh
Q 011744 100 TAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 100 ~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 149 (478)
.....+..+...-.+ .+- .++...+..-+-|+.+.|+..|+.+|+....
T Consensus 110 r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 110 RSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred HHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 999888877653222 111 1556667677779999999999999987654
No 135
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=5.2 Score=40.33 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=86.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCCCh--h----hhhHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhc-cccccc--
Q 011744 49 NTFVKDSQDPNPLIRALAVRTMGCIRV--D----KITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDIN-AELVED-- 118 (478)
Q Consensus 49 n~l~kdL~~~n~~vr~~AL~~l~~i~~--~----e~~~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~-p~~~~~-- 118 (478)
-++-.-..+|+..+|++|.+.|+++.+ | .+.+.++..|...|-| .+..|--.|..|+.++..+- ...+.+
T Consensus 261 ~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 261 LSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 344455668889999999999999753 2 3455566777777766 56789999999998876532 111111
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHH----HHHHHHHhcccCChhh
Q 011744 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH----TLSKLLTALNECTEWG 177 (478)
Q Consensus 119 ~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~----~~~~Ll~~l~~~~~~~ 177 (478)
-++...++++..|.++.++.+|+.+++.+.+-..++...++.. .+..++-.+.+++|..
T Consensus 341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v 403 (533)
T KOG2032|consen 341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV 403 (533)
T ss_pred hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH
Confidence 1356778889999999999999999999887754433333322 2223444455666643
No 136
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.77 E-value=6.5 Score=41.45 Aligned_cols=100 Identities=18% Similarity=0.112 Sum_probs=53.5
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHH
Q 011744 123 ESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVER 202 (478)
Q Consensus 123 ~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~ 202 (478)
..+.+....++..|+...+..+..+......---+++.+...+++..+.+-.|-..+..+..|++|...+.++-..+.+.
T Consensus 88 ~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~ 167 (892)
T KOG2025|consen 88 YHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNL 167 (892)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHH
Confidence 33344445677788888877777665533211112333444455555555566666666666666653222222345555
Q ss_pred hhhhhc-CCChHHHHHHHHHH
Q 011744 203 VTPRLQ-HANCAVVLSAVKMI 222 (478)
Q Consensus 203 l~~~l~-~~~~~V~~ea~~~i 222 (478)
+..+++ ++++.|+..|...+
T Consensus 168 l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 168 LKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHHHHhcCCcHHHHHHHHHhh
Confidence 555554 35666666665443
No 137
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=1.9 Score=41.58 Aligned_cols=138 Identities=19% Similarity=0.257 Sum_probs=69.2
Q ss_pred HhhhhcCHHHHHHHHHHHHHHHhcchhhHHH-----HHHHHHHHhcccc-hhHHHHHHHHHHHHHhhCCcchHHH-----
Q 011744 318 EYATEVDVDFVRKAVRAIGRCAIKLERAAER-----CISVLLELIKIKV-NYVVQEAIIVIKDIFRRYPNTYESI----- 386 (478)
Q Consensus 318 ~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~-----~i~~ll~ll~~~~-~~v~~~~~~~l~~i~~~~~~~~~~~----- 386 (478)
.|+.+.+..+|..+.+.|+.+++.-|+..+. ....++..++..+ ..++..+...+..++++++..+...
T Consensus 131 ~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G 210 (342)
T KOG2160|consen 131 GYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG 210 (342)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC
Confidence 3566666666666666666666655443322 2345555555433 3456666666666666665433221
Q ss_pred HHHHHhhcCCC-ChhhHHHHHHHHhhcccCccCC-----HHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHhccCCC
Q 011744 387 IATLCESLDTL-DEPEAKASMIWIIGEYAERIDN-----ADELLESFLESF-PEEPAQVQLQLLTATVKLFLKKPT 455 (478)
Q Consensus 387 i~~L~~~l~~~-~~~~~~~~~~~ilGE~~~~~~~-----~~~~l~~l~~~~-~~~~~~vk~~il~a~~Kl~~~~~~ 455 (478)
..-|.+.++.- .+...++.++.+++-+...-.. ....+.....++ ...+.+++...+++..++....+.
T Consensus 211 ~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 211 YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 22344444432 2344455555555544322111 122222333333 344666777777777776665444
No 138
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.72 E-value=0.53 Score=41.48 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhh-cc--------cccccc------cHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHH
Q 011744 97 VRKTAAICVAKLYDI-NA--------ELVEDR------GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (478)
Q Consensus 97 VRk~A~~al~~i~~~-~p--------~~~~~~------~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~ 161 (478)
||..|..|+.-+.+. +| ..+++. .-...+.-++.|+++.||.+|+.++..+.+....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~-------- 73 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKP-------- 73 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHH--------
Confidence 788888888888776 32 122221 2334555678999999999999999988765310
Q ss_pred HHHHHHHhcc----cCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcC-CChHHHHHHHHHHHHhhhhcC----Ch
Q 011744 162 TLSKLLTALN----ECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQH-ANCAVVLSAVKMILQQMELIT----ST 232 (478)
Q Consensus 162 ~~~~Ll~~l~----~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~-~~~~V~~ea~~~i~~~~~~~~----~~ 232 (478)
.+.. .+.-. ...++..- +=.++ .++-..+...+++ .++.+.-...+++..+....+ .+
T Consensus 74 ~L~~-Ae~~~~~~~sFtslS~t-La~~i-----------~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~ 140 (182)
T PF13251_consen 74 FLAQ-AEESKGPSGSFTSLSST-LASMI-----------MELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPP 140 (182)
T ss_pred HHHH-HHhcCCCCCCcccHHHH-HHHHH-----------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCH
Confidence 1111 01000 01112111 00000 0111222233333 355566666666554432111 23
Q ss_pred HHHHHHHHHhhhHHHHhh-cCChhHHHHHHHHHHHHHhhC
Q 011744 233 DVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRR 271 (478)
Q Consensus 233 ~~~~~~~~~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~~ 271 (478)
+++. .+++.+..++ +.|++++-.++..++.+....
T Consensus 141 ~ll~----~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 141 GLLT----EVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred hHHH----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 4443 4444544455 489999999999999988754
No 139
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=4.1 Score=38.82 Aligned_cols=149 Identities=19% Similarity=0.290 Sum_probs=89.8
Q ss_pred hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc-------ccccccHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 011744 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE-------LVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (478)
Q Consensus 75 ~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~-------~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 147 (478)
...+++.+.|.++..+.+++..|+--|+..++.+...+.. .+.+.++.+.+..++-.+|..|..+|...+..|
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4567888999999999999999999888888887764431 112346677777888888989999998888877
Q ss_pred hhhCCC--Cccc--c-cHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH-----HHHHHhhhhhcC-CChHHHH
Q 011744 148 EENSSR--PIFE--I-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQH-ANCAVVL 216 (478)
Q Consensus 148 ~~~~~~--~~~~--~-~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~-----~~l~~l~~~l~~-~~~~V~~ 216 (478)
..-... ..|. + .....+.+ -..|+....++++.++-.+..-++..++ -++..+..-++- .+.-|+.
T Consensus 156 alfpaaleaiFeSellDdlhlrnl---aakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVia 232 (524)
T KOG4413|consen 156 ALFPAALEAIFESELLDDLHLRNL---AAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIA 232 (524)
T ss_pred HhcHHHHHHhcccccCChHHHhHH---HhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehh
Confidence 643210 0010 0 00011111 1135666677776666554433333222 133333333433 4566777
Q ss_pred HHHHHHHHhh
Q 011744 217 SAVKMILQQM 226 (478)
Q Consensus 217 ea~~~i~~~~ 226 (478)
.++.....+.
T Consensus 233 nciElvteLa 242 (524)
T KOG4413|consen 233 NCIELVTELA 242 (524)
T ss_pred hHHHHHHHHH
Confidence 7777766654
No 140
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.49 E-value=1.6 Score=46.90 Aligned_cols=273 Identities=14% Similarity=0.169 Sum_probs=149.1
Q ss_pred ChhhHHHHHHHHhhccCC---ChHHHHHHHHHhhhhh-cCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHh
Q 011744 174 TEWGQVFILDALSRYKAA---DAREAENIVERVTPRL-QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTL 249 (478)
Q Consensus 174 ~~~~q~~ll~~l~~~~~~---~~~~~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l 249 (478)
.|++-.+++.++.+|... .+.-...+++.....+ .+.-+.++..|++++..+. +++.+....-.+...|..+
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~----~~~vl~~~~p~ild~L~ql 538 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC----KVKVLLSLQPMILDGLLQL 538 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc----CceeccccchHHHHHHHHH
Confidence 455555666666655432 1222334555444433 3556788899999888763 3333332222344455566
Q ss_pred hc-CChhHHHHHHHHHHHHHhhCccc-------hhhccceeeeccCCChhHHHHHHHHHHHhcCc-cc----HHHHHHHH
Q 011744 250 LS-AEPEIQYVALRNINLIVQRRPTI-------LAHEIKVFFCKYNDPIYVKMEKLEIMIKLASD-RN----IDQVLLEF 316 (478)
Q Consensus 250 l~-~~~~ir~~aL~~l~~l~~~~~~~-------~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~-~n----~~~Iv~~L 316 (478)
.+ ++.++--+.+++|...+..+|+. +.|..-.+|....+|+++-..+.+++-.++.. .| .+..++.+
T Consensus 539 as~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPsl 618 (1005)
T KOG2274|consen 539 ASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSL 618 (1005)
T ss_pred cccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 65 56788888889999999888753 33332233444566779988999988777632 22 34567777
Q ss_pred HHhhhhcC----HHHHHHHHHHHHHHHhcch-h----hHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHhhCC------
Q 011744 317 KEYATEVD----VDFVRKAVRAIGRCAIKLE-R----AAERCISVLLELIKIKVNY-VVQEAIIVIKDIFRRYP------ 380 (478)
Q Consensus 317 ~~~l~~~d----~~~r~~~v~~i~~l~~~~~-~----~~~~~i~~ll~ll~~~~~~-v~~~~~~~l~~i~~~~~------ 380 (478)
..-+...+ .....-++.-|..+...-| + .....+..+.++.-++++. .-+..-+.++-++...+
T Consensus 619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~ 698 (1005)
T KOG2274|consen 619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTW 698 (1005)
T ss_pred HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhh
Confidence 77765443 2222223333333333322 2 2244556666666555543 33333334443333211
Q ss_pred ---cch--HHHHHHHHhhcCCCChhhHHHHHHHHhhcc--------cCcc-CCHHHHHHHHhhcCC-CCCHHHHHHHHHH
Q 011744 381 ---NTY--ESIIATLCESLDTLDEPEAKASMIWIIGEY--------AERI-DNADELLESFLESFP-EEPAQVQLQLLTA 445 (478)
Q Consensus 381 ---~~~--~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~--------~~~~-~~~~~~l~~l~~~~~-~~~~~vk~~il~a 445 (478)
... .++...+-+.|+ |+.-..++..+|.+ |..+ ++...+++.++.++. .|...|-..++..
T Consensus 699 ~~e~g~~~~yImqV~sqLLd----p~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~V 774 (1005)
T KOG2274|consen 699 HDEPGHNLWYIMQVLSQLLD----PETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMV 774 (1005)
T ss_pred ccCCCccHHHHHHHHHHHcC----CccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111 244444444443 33322222244433 2222 124467888877774 6788888889999
Q ss_pred HHHHhccCC
Q 011744 446 TVKLFLKKP 454 (478)
Q Consensus 446 ~~Kl~~~~~ 454 (478)
++++....+
T Consensus 775 fahL~~t~~ 783 (1005)
T KOG2274|consen 775 FAHLVHTDL 783 (1005)
T ss_pred HHHHhhCCH
Confidence 999976543
No 141
>PF05536 Neurochondrin: Neurochondrin
Probab=94.43 E-value=7.6 Score=40.76 Aligned_cols=237 Identities=12% Similarity=0.115 Sum_probs=125.3
Q ss_pred chhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHH
Q 011744 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPL 86 (478)
Q Consensus 7 ~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i 86 (478)
.+..+-.+++++++++-+.|-.|.+.+..+.+.++.... .-..+. .++| + +.+
T Consensus 3 ~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~-~~~~v~---------------~aig----~-------~Fl 55 (543)
T PF05536_consen 3 QSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQ-TRRRVF---------------EAIG----F-------KFL 55 (543)
T ss_pred chHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHH-HHHHHH---------------HhcC----h-------hHH
Confidence 345667889999999988888888888877776543210 000011 1111 0 112
Q ss_pred HhhcCC------CChHHHHHHHHHHHHHHhhccccccccc---HHHHHHHhhcCCCh-hhHHHHHHHHHHHhhhCCCCcc
Q 011744 87 QRCLKD------DDPYVRKTAAICVAKLYDINAELVEDRG---FLESLKDLISDNNP-MVVANAVAALAEIEENSSRPIF 156 (478)
Q Consensus 87 ~~~l~~------~~~~VRk~A~~al~~i~~~~p~~~~~~~---~~~~l~~lL~d~~~-~V~~~a~~~l~~i~~~~~~~~~ 156 (478)
.++|+. .++..-+.-+.++...+...|+...+++ -+|.+...+...+. .+..-|+..|..+.....+...
T Consensus 56 ~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~a 135 (543)
T PF05536_consen 56 DRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKA 135 (543)
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHH
Confidence 223322 2455556666666666666665543333 34566666655444 6777777777777643322111
Q ss_pred cccHHHHHHHHHhcccCChhhHHHHHHHHhhc----cC----CChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhh
Q 011744 157 EITSHTLSKLLTALNECTEWGQVFILDALSRY----KA----ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEL 228 (478)
Q Consensus 157 ~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~----~~----~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~ 228 (478)
-.-.+.+..|+..+.. .+...-..++++... .. ........+++.+...+......-.++....+..+.+.
T Consensus 136 Ll~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 136 LLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 1112344455554433 333333333333222 11 11223334556666666655566677777777776543
Q ss_pred cCC----hHHHHHHHHHhhhHHHHhhc-C-ChhHHHHHHHHHHHHHhhC
Q 011744 229 ITS----TDVVRNLCKKMAPPLVTLLS-A-EPEIQYVALRNINLIVQRR 271 (478)
Q Consensus 229 ~~~----~~~~~~~~~~~~~~l~~ll~-~-~~~ir~~aL~~l~~l~~~~ 271 (478)
.+. ......+.+.+...+..++. + .+.-|-.++.....+.+..
T Consensus 215 ~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 215 SPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred CCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 210 00112244455666677774 3 5788999998888887763
No 142
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.32 E-value=4.9 Score=38.88 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=65.6
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhcccC--chH----HHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----C----hh
Q 011744 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQ--PDL----AILAVNTFVKDSQDPNPLIRALAVRTMGCI----R----VD 76 (478)
Q Consensus 11 ~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~--~e~----~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~----~~ 76 (478)
+.+.+..+..++...|--++-.+...+... ++. ..-.+..+.+.++.....-+.+|++.++-+ + ..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 456777777788777776666666655332 222 222456778888877767777887765543 2 46
Q ss_pred hhhHHHHHHHHhhcCCCC--hHHHHHHHHHHHHH
Q 011744 77 KITEYLCDPLQRCLKDDD--PYVRKTAAICVAKL 108 (478)
Q Consensus 77 e~~~~l~~~i~~~l~~~~--~~VRk~A~~al~~i 108 (478)
++.+.+.|.+.+.+.|.+ +.+|-.++.|+.-+
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~ 158 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAIC 158 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH
Confidence 888899999999998854 45666666666544
No 143
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.29 E-value=9.6 Score=41.34 Aligned_cols=297 Identities=16% Similarity=0.182 Sum_probs=155.0
Q ss_pred hhhHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhc---ccccccccHHHHHHH-hhcCCChhhHHHHHHHHHHHhhhC
Q 011744 77 KITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDIN---AELVEDRGFLESLKD-LISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 77 e~~~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~---p~~~~~~~~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
+....+...+...+.+ ..|..--+|..++.++.... |+... .+...... +..|..+.++.+|+.++...++
T Consensus 445 d~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~-- 520 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK-- 520 (1005)
T ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--
Confidence 4444556666777754 67766669999999876653 33333 34433333 4467788899999998887763
Q ss_pred CCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH----HHHHHhhhhh--cCCChHHHHHHHHHHHHh
Q 011744 152 SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE----NIVERVTPRL--QHANCAVVLSAVKMILQQ 225 (478)
Q Consensus 152 ~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~----~~l~~l~~~l--~~~~~~V~~ea~~~i~~~ 225 (478)
.....++.+.+++.|+...++...-.-..++..|...+.-+++... .+.+...... .+.+|-|.-.+-.++-.+
T Consensus 521 ~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el 600 (1005)
T KOG2274|consen 521 VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEEL 600 (1005)
T ss_pred ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 2223445556666666655554444444556666554444443332 2333333222 345564444443333333
Q ss_pred hhhcCChHHHHHHHHHhhhHHHHhhc-CC----hhHHHHHHHHHHHHHhhCccch----hhc-cc-eeee-ccCCChhHH
Q 011744 226 MELITSTDVVRNLCKKMAPPLVTLLS-AE----PEIQYVALRNINLIVQRRPTIL----AHE-IK-VFFC-KYNDPIYVK 293 (478)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~ll~-~~----~~ir~~aL~~l~~l~~~~~~~~----~~~-~~-~~~~-l~~dd~~ir 293 (478)
...-.+ ...+..+.+|.++..+. .. +.....|+..|..+.+..|.-+ ..+ .+ ...| +.+||...=
T Consensus 601 ~q~~~~---~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tl 677 (1005)
T KOG2274|consen 601 LQIAAN---YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETL 677 (1005)
T ss_pred HHHHHh---hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHH
Confidence 210001 11123467888888775 33 5788899999998888765322 111 22 2222 456665555
Q ss_pred HHHHHHHHHhcCc-------------ccH---HHHHHHHHHhhhhcC--HHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 011744 294 MEKLEIMIKLASD-------------RNI---DQVLLEFKEYATEVD--VDFVRKAVRAIGRCAIKLERAAERCISVLLE 355 (478)
Q Consensus 294 ~~al~lL~~l~~~-------------~n~---~~Iv~~L~~~l~~~d--~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ 355 (478)
..+-+.|..+.+. .|. -+++..|++--.+.. .-+.+-++.-+.+.+....+....++..++.
T Consensus 678 Q~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avis 757 (1005)
T KOG2274|consen 678 QNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVIS 757 (1005)
T ss_pred HhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 5565655444322 232 233444442211111 1111222223333444444555566665555
Q ss_pred Hhccc-chhHHHHHHHHHHHHHhhCC
Q 011744 356 LIKIK-VNYVVQEAIIVIKDIFRRYP 380 (478)
Q Consensus 356 ll~~~-~~~v~~~~~~~l~~i~~~~~ 380 (478)
-+..+ .-.+.+..+.++..++-.++
T Consensus 758 rmq~ae~lsviQsLi~VfahL~~t~~ 783 (1005)
T KOG2274|consen 758 RLQQAETLSVIQSLIMVFAHLVHTDL 783 (1005)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhhCCH
Confidence 55544 34567778888887765544
No 144
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.25 E-value=3.7 Score=36.45 Aligned_cols=152 Identities=12% Similarity=0.108 Sum_probs=95.7
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHH
Q 011744 310 DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIAT 389 (478)
Q Consensus 310 ~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~ 389 (478)
+.-++.+++...+.+..+|..+++-+..+...-=-.+..++++++.+.++.++.++..+...+..+-+++|+.-.. .
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~---~ 83 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES---R 83 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH---H
Confidence 4455666666667888898888888877776532344578999999999989999998888888888777764211 1
Q ss_pred HHhhcCCCChhhHHHHHHHHhhcccCccC----CHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCC----CcchHHH
Q 011744 390 LCESLDTLDEPEAKASMIWIIGEYAERID----NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKP----TEGPQQM 461 (478)
Q Consensus 390 L~~~l~~~~~~~~~~~~~~ilGE~~~~~~----~~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~----~~~~~~~ 461 (478)
+. ..++.+.-+...-+++... .....+..++..+. .+...|...++++.|.+...+ ++..+.-
T Consensus 84 ~~--------~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~ 154 (187)
T PF12830_consen 84 YS--------EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDLTKLSSESSPSD 154 (187)
T ss_pred HH--------HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhccccccccchhH
Confidence 11 1122233232222222221 14456666665544 677888888889999887765 1224555
Q ss_pred HHHHHHHHHHHH
Q 011744 462 IQVTLKYYTCLC 473 (478)
Q Consensus 462 ~~~~l~~~~~~~ 473 (478)
+..+.=+|.+++
T Consensus 155 l~~~~Fla~nLA 166 (187)
T PF12830_consen 155 LDFLLFLAENLA 166 (187)
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 145
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=1.3 Score=42.71 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=87.1
Q ss_pred HHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-C-ChhHHHHHHHHHHHHHhhCccchh
Q 011744 200 VERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-A-EPEIQYVALRNINLIVQRRPTILA 276 (478)
Q Consensus 200 l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~-~~~ir~~aL~~l~~l~~~~~~~~~ 276 (478)
+..+...++++++.++--|+++++.+.. .+|..-..++. ...+.|...++ + +..+|--||-+++.+..+++....
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~q--NNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~ 203 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQ--NNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQD 203 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHh--cCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHH
Confidence 3344557889999999999999999864 36655555544 45666777776 3 345789999999999998875443
Q ss_pred hccc-----ee-eeccC--CChhHHHHHHHHHHHhcCcccHH-HHHHHH------HHhhhhcCHHHHHHHHHHHHHH
Q 011744 277 HEIK-----VF-FCKYN--DPIYVKMEKLEIMIKLASDRNID-QVLLEF------KEYATEVDVDFVRKAVRAIGRC 338 (478)
Q Consensus 277 ~~~~-----~~-~~l~~--dd~~ir~~al~lL~~l~~~~n~~-~Iv~~L------~~~l~~~d~~~r~~~v~~i~~l 338 (478)
.+.+ .+ .++.+ ++.-.+++++.++..+..++..+ .++..+ .++....+.+++..++.++...
T Consensus 204 ~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 204 EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSL 280 (342)
T ss_pred HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHH
Confidence 3321 11 22333 56788999999998887554332 222221 1233344556666655555433
No 146
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=93.98 E-value=0.28 Score=44.62 Aligned_cols=132 Identities=19% Similarity=0.173 Sum_probs=87.0
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCC-H-HHHHHHHHHhcCCChhhhhHHHHHHHHhh
Q 011744 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPN-P-LIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (478)
Q Consensus 12 ~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n-~-~vr~~AL~~l~~i~~~e~~~~l~~~i~~~ 89 (478)
-.+-.++.+..++.|-+|++.+....+...+. .++.+.+-+.+-+ - .+-.+|-+.++.+.... +.+.+.+.+.
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W 128 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKW 128 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHH
Confidence 34556788888888888888876654332221 2444555554332 2 23344445555442111 4556668899
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC
Q 011744 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (478)
Q Consensus 90 l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 152 (478)
+.|+++++|+.|+.++.+.++. +..+ .+...+...+.|++..|+.+...+|.++...++
T Consensus 129 ~~s~~~w~rR~~~v~~~~~~~~--~~~~--~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 129 AKSDNEWVRRAAIVMLLRYIRK--EDFD--ELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHCSSHHHHHHHHHCTTTHGGG--CHHH--HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HhCCcHHHHHHHHHHHHHHHHh--cCHH--HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 9999999999999998876665 2222 466777888899999999999999999977653
No 147
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.98 E-value=1.2 Score=43.20 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=90.0
Q ss_pred CChhhHHHHHHHHHHHhhhCCCCcccccH--------HHHHHHHHhcccCChhhHHHHHHHHhhccCCChH---H-HHHH
Q 011744 132 NNPMVVANAVAALAEIEENSSRPIFEITS--------HTLSKLLTALNECTEWGQVFILDALSRYKAADAR---E-AENI 199 (478)
Q Consensus 132 ~~~~V~~~a~~~l~~i~~~~~~~~~~~~~--------~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~---~-~~~~ 199 (478)
.++.++...+..+.++...++. +...+. ..+..+++.+...|++.+....++++.+....+. . ....
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~ 147 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEA 147 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 4556666666666666665542 211111 1466777777778888888877777765433221 1 1234
Q ss_pred HHHhhhh----hcCCChHHHHHHHHHHHHhhhhcCChHHHHHHH-HHhhhHHHHhh------c--CChhHHHHHHHHHHH
Q 011744 200 VERVTPR----LQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL------S--AEPEIQYVALRNINL 266 (478)
Q Consensus 200 l~~l~~~----l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~ll------~--~~~~ir~~aL~~l~~ 266 (478)
++.+... +++.+..+..-|++++..+. ..++.-..+. .+.++.+..++ + ....+.|-++-++..
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL---~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl 224 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLL---RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL 224 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHH---TSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHh---CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Confidence 4444444 33445556677777777764 2444333322 25566677777 2 245789999999998
Q ss_pred HHhhCccc---h-hhc-ccee-eecc-CCChhHHHHHHHHHHHhcCccc
Q 011744 267 IVQRRPTI---L-AHE-IKVF-FCKY-NDPIYVKMEKLEIMIKLASDRN 308 (478)
Q Consensus 267 l~~~~~~~---~-~~~-~~~~-~~l~-~dd~~ir~~al~lL~~l~~~~n 308 (478)
++-. ++. + ..+ ++.+ ..+. .....|-|-++.++.++.+...
T Consensus 225 LSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 225 LSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred HhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 8753 222 1 111 1111 1122 2335677788888888875543
No 148
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=93.89 E-value=0.082 Score=34.23 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=31.1
Q ss_pred HHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHH
Q 011744 104 CVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAA 143 (478)
Q Consensus 104 al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~ 143 (478)
|+..+...+|+....+.+.+.+...+.|++|.|+.+|+.+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4566777788877665677888888889999998888765
No 149
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.77 E-value=1.2 Score=38.78 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=74.1
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHH
Q 011744 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI 199 (478)
Q Consensus 120 ~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~ 199 (478)
+|...+.++|+++++.-+-.++.++....+..+ + ..+.+ .+.+|.+. ++.+|..
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~---~-------e~l~~---~~~~W~~~-Ll~~L~~------------ 78 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS---W-------EILLS---HGSQWLRA-LLSILEK------------ 78 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh---H-------HHHHH---HHHHHHHH-HHHHHcC------------
Confidence 688999999999998888888888877766542 1 11111 23456653 3344433
Q ss_pred HHHhhhhhcCCChHHHHHHHHHHHHhhhhc-CChHHHHHHHH----HhhhHHHHhhcCChhHHHHHHHHHHHHHhhCccc
Q 011744 200 VERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNLCK----KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTI 274 (478)
Q Consensus 200 l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~-~~~~~~~~~~~----~~~~~l~~ll~~~~~ir~~aL~~l~~l~~~~~~~ 274 (478)
..++.+...|+.++..+...+ +.|++.++... .+++.++.++++ +...-.+++.+..+...+|..
T Consensus 79 ---------~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 79 ---------PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHCCcc
Confidence 122333444444444433222 23455544322 233444444443 567778999999999999999
Q ss_pred hhhccc
Q 011744 275 LAHEIK 280 (478)
Q Consensus 275 ~~~~~~ 280 (478)
|.+|..
T Consensus 149 ~rp~~~ 154 (165)
T PF08167_consen 149 FRPFAN 154 (165)
T ss_pred ccchHH
Confidence 888753
No 150
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.59 E-value=10 Score=40.69 Aligned_cols=137 Identities=15% Similarity=0.234 Sum_probs=77.7
Q ss_pred hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc-c------------ccccccHHHHHHH----hhcCCChhhH
Q 011744 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-E------------LVEDRGFLESLKD----LISDNNPMVV 137 (478)
Q Consensus 75 ~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p-~------------~~~~~~~~~~l~~----lL~d~~~~V~ 137 (478)
++++++.+.+.++.--...++++|..|+++++.+.+..- . .+. ..+++.+.+ .....|...+
T Consensus 429 t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~ 507 (618)
T PF01347_consen 429 TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCII-EKYVPYLEQELKEAVSRGDEEEK 507 (618)
T ss_dssp -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS---GGGTHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhH-HHHHHHHHHHHHHHhhccCHHHH
Confidence 456666544443332233788999999999998865321 1 111 134444444 4456677778
Q ss_pred HHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccC---ChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcC--CCh
Q 011744 138 ANAVAALAEIEENSSRPIFEITSHTLSKLLTALNEC---TEWGQVFILDALSRYKAADAREAENIVERVTPRLQH--ANC 212 (478)
Q Consensus 138 ~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~---~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~--~~~ 212 (478)
..++.+|+.+... ..+..+...+... +...++..++.|+++....++. +.+.+.+.+.+ .++
T Consensus 508 ~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~---v~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 508 IVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK---VREILLPIFMNTTEDP 574 (618)
T ss_dssp HHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH---HHHHHHHHHH-TTS-H
T ss_pred HHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH---HHHHHHHHhcCCCCCh
Confidence 8888888887532 2344555544433 5667777788888665444433 34444444443 356
Q ss_pred HHHHHHHHHHHHh
Q 011744 213 AVVLSAVKMILQQ 225 (478)
Q Consensus 213 ~V~~ea~~~i~~~ 225 (478)
.||..|...++..
T Consensus 575 EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 575 EVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhc
Confidence 8999999888875
No 151
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=14 Score=40.53 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhhC-ccchhhccc----eeee-----ccCCChhHHHHHHHHHHHhc----CcccHHHHHHHHH-----H
Q 011744 258 YVALRNINLIVQRR-PTILAHEIK----VFFC-----KYNDPIYVKMEKLEIMIKLA----SDRNIDQVLLEFK-----E 318 (478)
Q Consensus 258 ~~aL~~l~~l~~~~-~~~~~~~~~----~~~~-----l~~dd~~ir~~al~lL~~l~----~~~n~~~Iv~~L~-----~ 318 (478)
-+|+..+..++.++ ++.+.+.++ +|.. ..++++--+--|+.++..++ ..+-.+..++.++ .
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence 46777888888776 566655432 2221 12334555567888877766 3344444444433 3
Q ss_pred hhhhcCHHHHHHHHHHHHHHH-hcch--hhHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHhhCCcchHH---HHH---
Q 011744 319 YATEVDVDFVRKAVRAIGRCA-IKLE--RAAERCISVLLELIKI-KVNYVVQEAIIVIKDIFRRYPNTYES---IIA--- 388 (478)
Q Consensus 319 ~l~~~d~~~r~~~v~~i~~l~-~~~~--~~~~~~i~~ll~ll~~-~~~~v~~~~~~~l~~i~~~~~~~~~~---~i~--- 388 (478)
..++.-..+|..++.-++..+ ..|+ ......++...++|.+ +.--|+-++..++.-++++.+...++ .|.
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~m 549 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIM 549 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHH
Confidence 345566678889999998888 5563 4556778888888884 44458889999999988876644332 233
Q ss_pred -HHHhhcCCCChhhHHHHHHHHhhcccCccCC-HHHHHHH
Q 011744 389 -TLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLES 426 (478)
Q Consensus 389 -~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~-~~~~l~~ 426 (478)
.++......+....-..+=-++++|++.+.. +.++...
T Consensus 550 q~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~ 589 (1010)
T KOG1991|consen 550 QELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQN 589 (1010)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence 3333223333333344555788888877643 4444333
No 152
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.47 E-value=6.8 Score=39.29 Aligned_cols=183 Identities=19% Similarity=0.243 Sum_probs=107.1
Q ss_pred CCChHHHHHHHHHHHHHHhhccccc-cc--ccHHHHHHHhhcC-CChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHH
Q 011744 92 DDDPYVRKTAAICVAKLYDINAELV-ED--RGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (478)
Q Consensus 92 ~~~~~VRk~A~~al~~i~~~~p~~~-~~--~~~~~~l~~lL~d-~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll 167 (478)
++...=|+.|..-+.++.......+ +. ..+...+.+.|.| .++..+.-|+..+.+++...+...++-..-.+.+.+
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 3455666777766877765443221 10 0223344455677 888899999999999999887666665555666776
Q ss_pred HhcccCChhhH-H---HHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhh
Q 011744 168 TALNECTEWGQ-V---FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMA 243 (478)
Q Consensus 168 ~~l~~~~~~~q-~---~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~ 243 (478)
..-.++.+-.- . -.++++..+.|. ..+..+.+++.+.+.-....+++.+-.+...++. +.+-.++..+.
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~-EeL~~ll~dia 450 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPL------QCIVNISPLILTADEPRAVAVIKMLTKLFERLSA-EELLNLLPDIA 450 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCch------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH-HHHHHhhhhhh
Confidence 65444333111 1 135555555442 1223333344445554444555555444433433 33344456677
Q ss_pred hHHHHhhc-CChhHHHHHHHHHHHHHhhCc-cchhhccce
Q 011744 244 PPLVTLLS-AEPEIQYVALRNINLIVQRRP-TILAHEIKV 281 (478)
Q Consensus 244 ~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~-~~~~~~~~~ 281 (478)
|.++.--. .++.+|..|.-+|-.+...-. +-+.||+..
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~ 490 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQ 490 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhh
Confidence 87766554 577888888888888877644 667777653
No 153
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=9.6 Score=38.49 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHH-HHhhcCCChhhHHHHHHHHHHHhhhCCC-Cc
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESL-KDLISDNNPMVVANAVAALAEIEENSSR-PI 155 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l-~~lL~d~~~~V~~~a~~~l~~i~~~~~~-~~ 155 (478)
..++-.+.+-..|++..+|.-|+.++++.+...|+.+.. ...++.+ ..+.++.+..|+..|+.+|.-+.+.... ..
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 344555566667899999999999999999988876542 1233333 4566777889999999988776654322 22
Q ss_pred ccccHHHHHHHHHhcccCChhhHH---HHHHHHhhccCCChH--HHHHHHHHhhh---hhcCCChHHHHHHHHHHHHh
Q 011744 156 FEITSHTLSKLLTALNECTEWGQV---FILDALSRYKAADAR--EAENIVERVTP---RLQHANCAVVLSAVKMILQQ 225 (478)
Q Consensus 156 ~~~~~~~~~~Ll~~l~~~~~~~q~---~ll~~l~~~~~~~~~--~~~~~l~~l~~---~l~~~~~~V~~ea~~~i~~~ 225 (478)
-..+.++..++.+...+.++-... .++..|..++..+-+ ..+.+.....+ -++++++.|..+|=.....+
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTC 414 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhc
Confidence 233344455555554444444433 345555555533322 22334433333 35778888776654444444
No 154
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.41 E-value=0.14 Score=41.39 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=61.3
Q ss_pred hcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCCHHHHHHH------Hhhc
Q 011744 357 IKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLES------FLES 430 (478)
Q Consensus 357 l~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~~~~~l~~------l~~~ 430 (478)
|+-+..+-++.+|.-= ..+..+-.-.++..|++.|+...+|.+.+.++.=||||....+....+++. +++-
T Consensus 18 L~WSP~H~se~FW~EN---a~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~L 94 (119)
T PF11698_consen 18 LEWSPVHKSEKFWREN---ADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMEL 94 (119)
T ss_dssp ----GGGG-HHHHHHH---SGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHH
T ss_pred ccccCCCCCccHHHHH---HHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHH
Confidence 4444455556666521 112233344678899999976668888999999999999988876666544 3445
Q ss_pred CCCCCHHHHHHHHHHHHHHhc
Q 011744 431 FPEEPAQVQLQLLTATVKLFL 451 (478)
Q Consensus 431 ~~~~~~~vk~~il~a~~Kl~~ 451 (478)
+..++++||...|.|+-|+..
T Consensus 95 m~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 95 MNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp TS-SSHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999864
No 155
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=7.7 Score=41.42 Aligned_cols=178 Identities=17% Similarity=0.222 Sum_probs=104.9
Q ss_pred HHHHHhhhhhcCC-ChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc---CChhHHHHHHHHHHHHHhhC--
Q 011744 198 NIVERVTPRLQHA-NCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS---AEPEIQYVALRNINLIVQRR-- 271 (478)
Q Consensus 198 ~~l~~l~~~l~~~-~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~---~~~~ir~~aL~~l~~l~~~~-- 271 (478)
+.++.+.....++ -..=|..|++.+=.++ ..+-..++....++++..|. .|+++--.+|+++..+..+.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~s-----rkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFS-----RKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHH-----HHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 4455555444432 3345666666655432 23444444456678887774 47898888999999888764
Q ss_pred ccchhhccceeeeccCCChhHHHHHHHHHHHh-cCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchh------
Q 011744 272 PTILAHEIKVFFCKYNDPIYVKMEKLEIMIKL-ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER------ 344 (478)
Q Consensus 272 ~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l-~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~------ 344 (478)
|.... ++...-...+.+--.+ -+++|+.- ++.++...|..+|+-+|.-+..+-..-|.
T Consensus 97 ~~v~d-----------ds~qsdd~g~~iae~fik~qd~I~l----ll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 97 PEVMD-----------DSTQSDDLGLWIAEQFIKNQDNITL----LLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred hhhcc-----------cchhhhHHHHHHHHHHHcCchhHHH----HHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 22211 1111111222222222 25566544 44455566788888888777654433222
Q ss_pred -hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcch-----HHHHHHHHhhcC
Q 011744 345 -AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY-----ESIIATLCESLD 395 (478)
Q Consensus 345 -~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~-----~~~i~~L~~~l~ 395 (478)
....-|..++++|.++...++++++..+..+++.++..+ +.+.++|+..++
T Consensus 162 l~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 162 LVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred HHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 123447788888899888899999999988888777654 344555555443
No 156
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.08 E-value=7.6 Score=42.47 Aligned_cols=174 Identities=11% Similarity=0.119 Sum_probs=119.4
Q ss_pred hhhhhcCCChHHHHHHHHHHHHhhhhcCChH--HHHHHHHHhhhHHHHhhcCC--hhHHHHHHHHHHHHHhhCccchhhc
Q 011744 203 VTPRLQHANCAVVLSAVKMILQQMELITSTD--VVRNLCKKMAPPLVTLLSAE--PEIQYVALRNINLIVQRRPTILAHE 278 (478)
Q Consensus 203 l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~--~~ir~~aL~~l~~l~~~~~~~~~~~ 278 (478)
+...+.|.+|-=+.||+..+..... ++. ..... ...+..++....+| .++--.++..+..++..-+..+.++
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~---e~~~~~~~~~-~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILE---EAKKEIVKGY-TGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHh---ccccccccCc-chHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 3345668899999999888876532 222 11100 12223334444444 4567778888999998877777777
Q ss_pred cc-eee----eccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch------hhHH
Q 011744 279 IK-VFF----CKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE------RAAE 347 (478)
Q Consensus 279 ~~-~~~----~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~------~~~~ 347 (478)
.. .+- ++.+.-..+|..++..+-..++......+.+.+..+++..++.++.+....+.++..+.+ ....
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~ 413 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVK 413 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence 54 232 333444678888888888888888889999999999999999999998777777666553 2345
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHhhCC
Q 011744 348 RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP 380 (478)
Q Consensus 348 ~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~ 380 (478)
..+..+.....+.+..|+..+.+.+..+.+.+.
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 566677777777788899888888877765544
No 157
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.94 E-value=9.4 Score=36.92 Aligned_cols=186 Identities=18% Similarity=0.196 Sum_probs=101.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHhhc--cccccc--ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC--CCCccc
Q 011744 84 DPLQRCLKDDDPYVRKTAAICVAKLYDIN--AELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENS--SRPIFE 157 (478)
Q Consensus 84 ~~i~~~l~~~~~~VRk~A~~al~~i~~~~--p~~~~~--~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~--~~~~~~ 157 (478)
......+.+++...|..|..++.++.... |+.+.+ ..+.+.+.+.++-....=+.-|+.++.-++-.- ..+.-.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 34555567788999999999999988643 344332 134566666666544433444445454443331 122222
Q ss_pred ccHHHHHHHHHhcccCChhhH--HHHH---HHHhhccCCChHHHH---HHHHHhhh--hhcC----------CChHHHHH
Q 011744 158 ITSHTLSKLLTALNECTEWGQ--VFIL---DALSRYKAADAREAE---NIVERVTP--RLQH----------ANCAVVLS 217 (478)
Q Consensus 158 ~~~~~~~~Ll~~l~~~~~~~q--~~ll---~~l~~~~~~~~~~~~---~~l~~l~~--~l~~----------~~~~V~~e 217 (478)
++....+.|.+.+.+...-.+ ...+ -++.-++-.+.++.. +.++.+.. ..+. .++.|.-.
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 333333334444444332222 2333 333444444555555 34442221 1111 13568878
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhh
Q 011744 218 AVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQR 270 (478)
Q Consensus 218 a~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~ 270 (478)
|+..-.-+...++. ..+........+.|..+|. ++.++|.+|=++|..+.+.
T Consensus 206 AL~aW~lLlt~~~~-~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 206 ALSAWALLLTTLPD-SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 77766555433332 2333444667788888885 7899999999999888664
No 158
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=92.93 E-value=1.6 Score=47.00 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=106.6
Q ss_pred HHhhc-CCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHH-HHhhcccccccccHHHHHHHh
Q 011744 51 FVKDS-QDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAK-LYDINAELVEDRGFLESLKDL 128 (478)
Q Consensus 51 l~kdL-~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~-i~~~~p~~~~~~~~~~~l~~l 128 (478)
+-|.+ --.+|..-++|.+.+..+.+|+.-.......--...| ++.++|.+-.|-.+ +|++- +- .+.+|.+.+.
T Consensus 801 v~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D-~~~~~~r~~~a~~riLykQR---fF-~~ivP~l~~~ 875 (1030)
T KOG1967|consen 801 VTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSD-SNPLLKRKGHAEPRILYKQR---FF-CDIVPILVSK 875 (1030)
T ss_pred HHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhcc-ChHHhhhccccchhHHHHHH---HH-HhhHHHHHHH
Confidence 34544 3466777889999999999888777655544444444 45566666665554 34321 11 1456888777
Q ss_pred hcCCChhhHHHHHHHHHHHhhhCCCCc-ccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCCh----HHHHHHHHHh
Q 011744 129 ISDNNPMVVANAVAALAEIEENSSRPI-FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA----REAENIVERV 203 (478)
Q Consensus 129 L~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~----~~~~~~l~~l 203 (478)
....+.+++..-+.+|..+..+.|... ...+...++=|++.|.-+|+-.++..++.+.......+ +....+++.+
T Consensus 876 ~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~l 955 (1030)
T KOG1967|consen 876 FETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYL 955 (1030)
T ss_pred hccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHH
Confidence 775555667777788877777665432 33445566777888887888888877777765543222 2333455555
Q ss_pred hhhhcCCC---hHHHHHHHHHHHHhhh
Q 011744 204 TPRLQHAN---CAVVLSAVKMILQQME 227 (478)
Q Consensus 204 ~~~l~~~~---~~V~~ea~~~i~~~~~ 227 (478)
..+-++.+ ..|+..|.+++..+..
T Consensus 956 Lsls~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 956 LSLSSDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred HhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 44434333 4788888888877643
No 159
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=16 Score=39.51 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=51.6
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHh--hcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC
Q 011744 83 CDPLQRCLKDDDPYVRKTAAICVAKLYD--INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (478)
Q Consensus 83 ~~~i~~~l~~~~~~VRk~A~~al~~i~~--~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 152 (478)
......-+.|+-+.+|-.|...+.+.++ .....+...+......+.|.|.|+-|-.+|+..+..++...+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc
Confidence 3445555677888999999999999987 333333334677888889999999999999986655555433
No 160
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=92.87 E-value=17 Score=39.83 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHhc--CcccHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHH
Q 011744 290 IYVKMEKLEIMIKLA--SDRNIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQ 366 (478)
Q Consensus 290 ~~ir~~al~lL~~l~--~~~n~~~Iv~~L~~~l~~-~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~ 366 (478)
.-+|..+.-.|.+|| ++.=++..++-|...+.. .+..+|.++|-+++.++..|..-.+.|++.+-..|.+....|+.
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRr 1024 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRR 1024 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHH
Confidence 356777777788876 555567777777766654 34679999999999999999878889999999999999999999
Q ss_pred HHHHHHHHHHhhC-CcchH-HHHHHHHhhcCCCChhhHHHHHHHHhhcc
Q 011744 367 EAIIVIKDIFRRY-PNTYE-SIIATLCESLDTLDEPEAKASMIWIIGEY 413 (478)
Q Consensus 367 ~~~~~l~~i~~~~-~~~~~-~~i~~L~~~l~~~~~~~~~~~~~~ilGE~ 413 (478)
..+..+..+++.. -.-.. -.+-.+...++. +++++.-+=+.+|+.
T Consensus 1025 qt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~--~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1025 QTIILLARLLQFGIVKWNGELFIRFMLALLDA--NEDIRNDAKFYISEV 1071 (1529)
T ss_pred HHHHHHHHHHhhhhhhcchhhHHHHHHHHccc--CHHHHHHHHHHHHHH
Confidence 9998888887531 11111 122233333342 455665555666654
No 161
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.87 E-value=4.3 Score=40.65 Aligned_cols=174 Identities=17% Similarity=0.199 Sum_probs=109.0
Q ss_pred CChhHHHHHHHHHHHhcCcc-------cHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHhcch----hhHHHHHHHHHH
Q 011744 288 DPIYVKMEKLEIMIKLASDR-------NIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLE 355 (478)
Q Consensus 288 dd~~ir~~al~lL~~l~~~~-------n~~~Iv~~L~~~l~~-~d~~~r~~~v~~i~~l~~~~~----~~~~~~i~~ll~ 355 (478)
+..+=+..|+.=|..+..++ ...+|+..+++.+.+ .++..+..+.+.|+.+...-+ ...+..+..+++
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 34566777888665554333 355677777788887 566677777777777665433 344566667777
Q ss_pred HhcccchhHHHHHHHHHHHHH-hhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC------HHHHHHHHh
Q 011744 356 LIKIKVNYVVQEAIIVIKDIF-RRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN------ADELLESFL 428 (478)
Q Consensus 356 ll~~~~~~v~~~~~~~l~~i~-~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~------~~~~l~~l~ 428 (478)
.-.+.++.+...+.+.....+ ...|... |..+...+-...+|.. ..++-.+.+..+.++. -+|+.--++
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~---I~~i~~~Ilt~D~~~~-~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC---IVNISPLILTADEPRA-VAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhH---HHHHhhHHhcCcchHH-HHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 777777777766666544444 4455432 3334433433333432 2334344444333321 346666778
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHH
Q 011744 429 ESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVT 465 (478)
Q Consensus 429 ~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~ 465 (478)
+.|...++.||-..+-+++-++.+..-+++++-++++
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 8898899999999999999999988855577666554
No 162
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.39 Score=48.78 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=79.5
Q ss_pred ccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHH
Q 011744 18 MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYV 97 (478)
Q Consensus 18 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~V 97 (478)
.+..|-.+||.+-+|+....-.+++.+ +.+++---+|.|++||+-..-+|+--+...--+.....+..+..|++.+|
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~~l---v~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfV 637 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRDLL---VGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFV 637 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcchh---hHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHH
Confidence 566789999999999998888888865 55555555789999998877776654332222333344666778999999
Q ss_pred HHHHHHHHHHHHh-hccccccc-ccHHHHHHHhhcCCCh
Q 011744 98 RKTAAICVAKLYD-INAELVED-RGFLESLKDLISDNNP 134 (478)
Q Consensus 98 Rk~A~~al~~i~~-~~p~~~~~-~~~~~~l~~lL~d~~~ 134 (478)
|+.|..+..-|.- .+|++.+. .++...+.+.+.|++.
T Consensus 638 RQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 638 RQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred HHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 9999999988765 44555442 1344555566666553
No 163
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=92.12 E-value=3.6 Score=38.14 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=70.2
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhccccc------cc-----ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCccc
Q 011744 89 CLKDDDPYVRKTAAICVAKLYDINAELV------ED-----RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE 157 (478)
Q Consensus 89 ~l~~~~~~VRk~A~~al~~i~~~~p~~~------~~-----~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~ 157 (478)
++.|+++.|.|.|+.|...+|+.-=..+ +. ..+.+.+...+.+.+++|+.+|+..+..+..........
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4688999999999999999997521111 00 134566667788899999999999998765432110000
Q ss_pred ccHH---HHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCC--hHHHHHHHHHHHHhh
Q 011744 158 ITSH---TLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHAN--CAVVLSAVKMILQQM 226 (478)
Q Consensus 158 ~~~~---~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~--~~V~~ea~~~i~~~~ 226 (478)
-... .-.-=+..++...|+....-| ..|+..+++.+...+.+.. +.++..++..+..+.
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~L----------e~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Ia 144 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQL----------EAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIA 144 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHH----------HHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 0000 000011122223344433222 2456678888887776544 555556666555543
No 164
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=21 Score=38.56 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhhhHHHHhhc-CCh-------------hHHHHHHHHHHHHHhhCccchhhccceee----ec----cCCC
Q 011744 232 TDVVRNLCKKMAPPLVTLLS-AEP-------------EIQYVALRNINLIVQRRPTILAHEIKVFF----CK----YNDP 289 (478)
Q Consensus 232 ~~~~~~~~~~~~~~l~~ll~-~~~-------------~ir~~aL~~l~~l~~~~~~~~~~~~~~~~----~l----~~dd 289 (478)
|+..+.=++.-.+.+..+++ +.| .+|-...+.+...+++|++.|++++..|. .+ ..+.
T Consensus 225 PEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~ 304 (960)
T KOG1992|consen 225 PEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDT 304 (960)
T ss_pred hHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCc
Confidence 55555444445555666664 221 46778888899999999999887765332 11 2222
Q ss_pred --hhHHHHHHHHHHHhcC
Q 011744 290 --IYVKMEKLEIMIKLAS 305 (478)
Q Consensus 290 --~~ir~~al~lL~~l~~ 305 (478)
-++...|++.|..++.
T Consensus 305 kyD~Lvs~Al~FLt~V~~ 322 (960)
T KOG1992|consen 305 KYDYLVSKALQFLTSVSR 322 (960)
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 3677788999877664
No 165
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=7.4 Score=41.94 Aligned_cols=175 Identities=11% Similarity=0.113 Sum_probs=109.9
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhccc--Cch--HHHHHHHHHHhhcCCCCHHHHHHHHH---HhcCCChhhhhHHHH
Q 011744 11 FTDVVNCMQTENLELKKLVYLYLINYAKS--QPD--LAILAVNTFVKDSQDPNPLIRALAVR---TMGCIRVDKITEYLC 83 (478)
Q Consensus 11 ~~~ii~l~~s~~~~~Krl~yl~l~~~~~~--~~e--~~~l~in~l~kdL~~~n~~vr~~AL~---~l~~i~~~e~~~~l~ 83 (478)
+-+++..+.++-...|--|...+..+++. ... ...-+......-+.+.|+++--.|++ +||.+-+..+.+.+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 45667778888889999998888888873 211 22234556667788999999999999 666665556666554
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH----hhcCCChhhHHHHHHHHHHHhhhCCCCccccc
Q 011744 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD----LISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (478)
Q Consensus 84 ~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~----lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~ 159 (478)
..-.+-=....+.-|-+.-.|++++.+.-.+.+. ++...+.+ ..+|+|...+.+++..++.+++......-+.+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~--~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF--KYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHH--HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 4333322223355666777899998887666654 34444433 34678888899999999999887642222344
Q ss_pred HHHHHHHHHhcc-cCChhhHHHHHHHHhh
Q 011744 160 SHTLSKLLTALN-ECTEWGQVFILDALSR 187 (478)
Q Consensus 160 ~~~~~~Ll~~l~-~~~~~~q~~ll~~l~~ 187 (478)
+..+..++.... +..+...-...+++..
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~ 915 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAE 915 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHH
Confidence 455555555432 2223333334444443
No 166
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=91.80 E-value=1.6 Score=45.64 Aligned_cols=172 Identities=17% Similarity=0.178 Sum_probs=113.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcC----CChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh-cccccccccH
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGC----IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGF 121 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~----i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~-~p~~~~~~~~ 121 (478)
+++.+.|-+.+++..+|..=|+-+-. +..+.+-..++|.+..++.|.|+.+|-.++.++..+.-+ ++..+. .+.
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln-~El 409 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN-GEL 409 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc-HHH
Confidence 56788888999999999888885544 344566668899999999999999999999999887753 333232 356
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHhhhCCC-CcccccHHHHHHHHHhcccCChhhHH-----HHHHHHhhccCCChHH
Q 011744 122 LESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSHTLSKLLTALNECTEWGQV-----FILDALSRYKAADARE 195 (478)
Q Consensus 122 ~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~q~-----~ll~~l~~~~~~~~~~ 195 (478)
...+.++-.|++++.+.+...++++|.....+ .+-...... +.+.+. ||+.-. ..+.....|.+. .+.
T Consensus 410 lr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~a---ftralk--dpf~paR~a~v~~l~at~~~~~~-~~v 483 (690)
T KOG1243|consen 410 LRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASA---FTRALK--DPFVPARKAGVLALAATQEYFDQ-SEV 483 (690)
T ss_pred HHHHHhhCccccCcccccceeeecccccccchhhhccccchh---hhhhhc--CCCCCchhhhhHHHhhcccccch-hhh
Confidence 67777766799999999998899888776421 111111111 122222 333322 233333444432 234
Q ss_pred HHHHHHHhhhhhcCCChHHHHHHHHHHHHh
Q 011744 196 AENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (478)
Q Consensus 196 ~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~ 225 (478)
+.+++..+.+..-+.+..|+-.|-+.+-.+
T Consensus 484 a~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 484 ANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhhccccccccccCcccchhhHHHHHHHHH
Confidence 556777777777777777777776666554
No 167
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=91.75 E-value=3.1 Score=43.25 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=88.1
Q ss_pred cCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCC--CHHHHHHHHHHh---cCC---ChhhhhHHHHHHH----
Q 011744 19 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP--NPLIRALAVRTM---GCI---RVDKITEYLCDPL---- 86 (478)
Q Consensus 19 ~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~--n~~vr~~AL~~l---~~i---~~~e~~~~l~~~i---- 86 (478)
.++....|-+.|+.=+..+....+. ++..+...+.++ +...|.+|++++ ..+ ..+..+..+.|.|
T Consensus 295 a~~~lq~kIL~~L~kS~~Aa~~~~~---~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g 371 (501)
T PF13001_consen 295 ASPRLQEKILSLLSKSVIAATSFPN---ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQG 371 (501)
T ss_pred CCHHHHHHHHHHHHHhHHHHhCCcc---HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcC
Confidence 3456667777777666555443222 134445677777 778999999999 443 2344444444444
Q ss_pred HhhcC--------CCChHHHHHHHHHHHHHHhhccccc-ccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhh
Q 011744 87 QRCLK--------DDDPYVRKTAAICVAKLYDINAELV-EDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 87 ~~~l~--------~~~~~VRk~A~~al~~i~~~~p~~~-~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 150 (478)
-+.+. ..+...|..|..|++.+.+..|+.+ .+-.++..+-+.|.++++.++.+.-.+|..+...
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 34442 2567899999999999999999988 3335566666667889999998888888776543
No 168
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.66 E-value=2.5 Score=39.99 Aligned_cols=118 Identities=14% Similarity=0.208 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcccC-chHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC---Chhh---hhHHHHHHHHhhcCCCChHHHH
Q 011744 27 KLVYLYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI---RVDK---ITEYLCDPLQRCLKDDDPYVRK 99 (478)
Q Consensus 27 rl~yl~l~~~~~~~-~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i---~~~e---~~~~l~~~i~~~l~~~~~~VRk 99 (478)
+..|+....+-.-+ ||. +.+...+.|.|.|=...+-+|+++..+ +.++ +...++..|.+-+++...-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~~---al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPEA---ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHHH---HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 55677666664443 444 467788899999988888888877754 3332 3334667788888889999999
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHHhhc---CCChhhHHHHHHHHHHHh
Q 011744 100 TAAICVAKLYDINAELVEDRGFLESLKDLIS---DNNPMVVANAVAALAEIE 148 (478)
Q Consensus 100 ~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~---d~~~~V~~~a~~~l~~i~ 148 (478)
.|++++.-++..+.+.+.+ ..-+.+..|+. +.+-.|+..|-.+|..+.
T Consensus 148 aA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV 198 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMV 198 (334)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 9999999999877665553 23233344442 344555666655555443
No 169
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.46 E-value=2.8 Score=34.97 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=60.2
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----Ch---hhhhH-HHHHHHHhhcCC---CChH
Q 011744 28 LVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RV---DKITE-YLCDPLQRCLKD---DDPY 96 (478)
Q Consensus 28 l~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~---~e~~~-~l~~~i~~~l~~---~~~~ 96 (478)
-+-+.+.-..+.+++....++..|+|-++++||.++..||..+-.+ +. .+++. .+...+.+++.. .++.
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~ 98 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPK 98 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHH
Confidence 3444455555666667778899999999999999999999966543 22 23333 445557777764 5778
Q ss_pred HHHHHHHHHHHHHhhcc
Q 011744 97 VRKTAAICVAKLYDINA 113 (478)
Q Consensus 97 VRk~A~~al~~i~~~~p 113 (478)
||+++...+..-....+
T Consensus 99 Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 99 VREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999988877665444
No 170
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.33 E-value=2.8 Score=36.39 Aligned_cols=103 Identities=22% Similarity=0.267 Sum_probs=68.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCC---hhhhh----HHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhh---ccccc
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT----EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI---NAELV 116 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~---~~e~~----~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~---~p~~~ 116 (478)
+..+.+-++|+++.-|..++..+..+. ++|.. ...+..+.+.++. ..+.+++.|+.++.+++.. .|+..
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~ 106 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT 106 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 455667778888888888888766553 23433 3455666677765 5668899999999999863 45543
Q ss_pred cc------ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC
Q 011744 117 ED------RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (478)
Q Consensus 117 ~~------~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 152 (478)
.+ +.+++.+.+++++ +.+...++.++..+.+..+
T Consensus 107 Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 107 REIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 22 2444555555554 5677788888888776654
No 171
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.25 E-value=0.63 Score=37.66 Aligned_cols=68 Identities=24% Similarity=0.293 Sum_probs=47.4
Q ss_pred HHHHHHhhc-CCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhhHHHHHHHHHHHhh
Q 011744 82 LCDPLQRCL-KDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 82 l~~~i~~~l-~~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 149 (478)
++..+.++| .+.++.+---|+.=++.+.+.+|.- +...+..+.+..++.++|+.|+..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 444466666 4457777777777788888888753 3334667788888888999999998888877643
No 172
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=90.91 E-value=18 Score=35.98 Aligned_cols=174 Identities=10% Similarity=0.094 Sum_probs=85.4
Q ss_pred CChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCc---------------
Q 011744 93 DDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI--------------- 155 (478)
Q Consensus 93 ~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--------------- 155 (478)
++..|-..+..++-++..++|+.... ..|.+.+...+-+....++..|..++.++...-+++.
T Consensus 146 ~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~ 225 (372)
T PF12231_consen 146 PSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLE 225 (372)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccc
Confidence 34445555666666666677754321 2599999888778888888887777666543221100
Q ss_pred ----ccccHHHHHHHHHhcccC----ChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhh
Q 011744 156 ----FEITSHTLSKLLTALNEC----TEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (478)
Q Consensus 156 ----~~~~~~~~~~Ll~~l~~~----~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~ 227 (478)
.+++.+.+.+++..=.+. +=|.. ++.+|+.-.....+..++.+......++++++.++.+|..+=-.+..
T Consensus 226 ~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~--~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 226 NGKLIQLYCERLKEMIKSKDEYKLAMQIWSV--VILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred cccHHHHHHHHHHHHHhCcCCcchHHHHHHH--HHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 001111111121110000 12332 23333321112223344556666668899999999998764332221
Q ss_pred hc-CChHHHHHHHHHhhhHHHHhhc--CCh----hHHHHHHHHHHHHH
Q 011744 228 LI-TSTDVVRNLCKKMAPPLVTLLS--AEP----EIQYVALRNINLIV 268 (478)
Q Consensus 228 ~~-~~~~~~~~~~~~~~~~l~~ll~--~~~----~ir~~aL~~l~~l~ 268 (478)
.. .++.......+-+..|+..-+. ..+ .++..++..+..+.
T Consensus 304 ~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 304 ASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 11 1222222222334455544443 223 55666666665554
No 173
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=90.23 E-value=4.3 Score=34.04 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhh
Q 011744 95 PYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 95 ~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 150 (478)
++||++.+.++..++.. +|+..+ ++++.+.+++.. ++.-....+..|..+.++
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eE 55 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQS-SPQHLELVLRILRILPEE 55 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhcc-chhHHHHHHHHHHHHHHH
Confidence 68999999999999885 488776 578888888776 455555566666555443
No 174
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=89.51 E-value=1.8 Score=37.34 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=25.6
Q ss_pred CchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC
Q 011744 40 QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR 74 (478)
Q Consensus 40 ~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~ 74 (478)
.|+++-...+.++.+ + ++.+|..|+|.+|.+|
T Consensus 8 yP~LL~~L~~iLk~e-~--s~~iR~E~lr~lGilG 39 (160)
T PF11865_consen 8 YPELLDILLNILKTE-Q--SQSIRREALRVLGILG 39 (160)
T ss_pred hHHHHHHHHHHHHhC-C--CHHHHHHHHHHhhhcc
Confidence 477777777888877 3 4889999999999887
No 175
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.49 E-value=4.8 Score=33.99 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=53.8
Q ss_pred HHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----Chh---hhh-HHHHHHHHhhcC-CCChHHHHHH
Q 011744 31 LYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD---KIT-EYLCDPLQRCLK-DDDPYVRKTA 101 (478)
Q Consensus 31 l~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~---e~~-~~l~~~i~~~l~-~~~~~VRk~A 101 (478)
+.+.-..+.++....-++..|+|-++++||.++..||..|-.+ +.+ +++ ..+...+.+++. ..++.||+++
T Consensus 26 leicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~ki 105 (142)
T cd03569 26 LEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKI 105 (142)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHH
Confidence 3344444555556677899999999999999999999865432 221 111 134555666665 5788999998
Q ss_pred HHHHHHHHh
Q 011744 102 AICVAKLYD 110 (478)
Q Consensus 102 ~~al~~i~~ 110 (478)
...+..-..
T Consensus 106 l~li~~W~~ 114 (142)
T cd03569 106 LELIQAWAL 114 (142)
T ss_pred HHHHHHHHH
Confidence 887765443
No 176
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=89.24 E-value=22 Score=34.90 Aligned_cols=82 Identities=16% Similarity=0.172 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccCchHHHHHHHHHHhhc-CCCCHHHHHHHHHHhcCCC---hhhhhHHHHHHHHhhcCCCChHHHHHHH
Q 011744 27 KLVYLYLINYAKSQPDLAILAVNTFVKDS-QDPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAA 102 (478)
Q Consensus 27 rl~yl~l~~~~~~~~e~~~l~in~l~kdL-~~~n~~vr~~AL~~l~~i~---~~e~~~~l~~~i~~~l~~~~~~VRk~A~ 102 (478)
-+.|-.+..+.. . .++.-+++.+..-+ +..||.....++.+++.-. +.++.+.++..+.+.+.++.+.|||.-.
T Consensus 5 ~~~~~~L~~l~~-~-~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~ 82 (339)
T PF12074_consen 5 VLHASMLSSLPS-S-SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWL 82 (339)
T ss_pred HHHHHHHHhCCC-c-chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHH
Confidence 333444444443 2 24444444444444 2367887777877776522 4677788889999999999999999999
Q ss_pred HHHHHHHh
Q 011744 103 ICVAKLYD 110 (478)
Q Consensus 103 ~al~~i~~ 110 (478)
.+++.++.
T Consensus 83 ~~~~~~~~ 90 (339)
T PF12074_consen 83 LCLGEALW 90 (339)
T ss_pred HHHHHHHh
Confidence 99999876
No 177
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=89.03 E-value=13 Score=33.05 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=53.6
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC
Q 011744 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (478)
Q Consensus 84 ~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 152 (478)
+.+.+...|+++++|+.|..++...+....+ .+ .+.+.+..++.|++..|+.+...+|.++....+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~-~~--~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETD-FD--LLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhccc-HH--HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 4577888899999999999999987776221 22 467888889999999999999999999887653
No 178
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.02 E-value=9 Score=31.88 Aligned_cols=88 Identities=22% Similarity=0.239 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----Chh---hhhH-HHHHHHHhhcCCC-
Q 011744 23 LELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD---KITE-YLCDPLQRCLKDD- 93 (478)
Q Consensus 23 ~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~---e~~~-~l~~~i~~~l~~~- 93 (478)
.+.---+-+.+.-..+.+++....++..|+|-++++||.+...||..+-.+ +.+ +++. .+...+.+++.++
T Consensus 14 ~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~ 93 (133)
T smart00288 14 LEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY 93 (133)
T ss_pred CCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC
Confidence 333333445556666667777788899999999999999999999966543 222 2222 3556677777663
Q ss_pred -ChHHHHHHHHHHHHHHh
Q 011744 94 -DPYVRKTAAICVAKLYD 110 (478)
Q Consensus 94 -~~~VRk~A~~al~~i~~ 110 (478)
.+.||+++...+..-+.
T Consensus 94 ~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 94 PLPLVKKRILELIQEWAD 111 (133)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 23488888877765444
No 179
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.88 E-value=7.2 Score=37.80 Aligned_cols=200 Identities=17% Similarity=0.197 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHhcCC-ChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhh
Q 011744 58 PNPLIRALAVRTMGCI-RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (478)
Q Consensus 58 ~n~~vr~~AL~~l~~i-~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V 136 (478)
+.+.....-++.+..+ ..++.++++...+-.++.+.. -|........+ ..++. .|.+.+. ++..+|..+
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~--~~~~~~~~~~~---~~~~~----~~~~fl~-ll~~~D~~i 121 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP--SRVELFLELAK---QDDSD----PYSPFLK-LLDRNDSFI 121 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHHHHHHHH-SS--SSHHHHHHHHH----TTH------HHHHHH-H-S-SSHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH--HHHHHHHHhcc---cccch----hHHHHHH-HhcCCCHHH
Confidence 3445555556666666 667777777777777665543 22233322221 12211 2545555 888889999
Q ss_pred HHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhccc----CChhhHHHHHHHHhhccCCChHHH-----HHHHHHhhhhh
Q 011744 137 VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE----CTEWGQVFILDALSRYKAADAREA-----ENIVERVTPRL 207 (478)
Q Consensus 137 ~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~----~~~~~q~~ll~~l~~~~~~~~~~~-----~~~l~~l~~~l 207 (478)
+..|+..+..+....+..........+..+++.+.. .+.-.+-..++.|+.+...+ +.. ...++.+.+.+
T Consensus 122 ~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 122 QLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHH
Confidence 999999998887665432222112344445444432 12222333455555544321 111 23455555566
Q ss_pred ------c-CCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc--CChhHHHHHHHHHHHHHhhC
Q 011744 208 ------Q-HANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS--AEPEIQYVALRNINLIVQRR 271 (478)
Q Consensus 208 ------~-~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~--~~~~ir~~aL~~l~~l~~~~ 271 (478)
. ..+.-+.|+++-++..++ + +++....+.+ .+++.+..++. ...-+-.+++.++..+....
T Consensus 201 ~~~~~~~~~~~~Ql~Y~~ll~lWlLS--F-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~ 271 (312)
T PF03224_consen 201 RKQATNSNSSGIQLQYQALLCLWLLS--F-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKA 271 (312)
T ss_dssp H---------HHHHHHHHHHHHHHHT--T-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSS
T ss_pred HhhcccCCCCchhHHHHHHHHHHHHh--c-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 1 234568899988777653 2 4455444322 35666666664 22345566777777776543
No 180
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.87 E-value=0.87 Score=29.05 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=23.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 011744 82 LCDPLQRCLKDDDPYVRKTAAICVAKLY 109 (478)
Q Consensus 82 l~~~i~~~l~~~~~~VRk~A~~al~~i~ 109 (478)
.+|.+.+++.+.++.||+.|+.|+..+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677888888888888888888888764
No 181
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=88.65 E-value=3.2 Score=34.93 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=61.9
Q ss_pred hccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC---Chhhhh-----HHHHHHHHh
Q 011744 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI---RVDKIT-----EYLCDPLQR 88 (478)
Q Consensus 17 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i---~~~e~~-----~~l~~~i~~ 88 (478)
+.+....+.---+.+-++-..+.+++...-++..|+|-|+++||.++..||..+-.+ +++.+- ..+...+.+
T Consensus 13 ATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~ 92 (140)
T PF00790_consen 13 ATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVK 92 (140)
T ss_dssp HT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred HhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHH
Confidence 444444444444555666677777788888999999999999999999999876643 222221 235666777
Q ss_pred hcCC-CCh-H--HHHHHHHHHHHHHh
Q 011744 89 CLKD-DDP-Y--VRKTAAICVAKLYD 110 (478)
Q Consensus 89 ~l~~-~~~-~--VRk~A~~al~~i~~ 110 (478)
++.+ ..+ . ||+++...+..-..
T Consensus 93 l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 93 LIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHccCCCCchhHHHHHHHHHHHHHHH
Confidence 6654 222 3 89999877765544
No 182
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.63 E-value=0.92 Score=28.94 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=27.5
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHHh
Q 011744 119 RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 119 ~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~ 148 (478)
.+.++.|.++|.+.|+.|+..|+.++..++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 478899999999999999999999998875
No 183
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.53 E-value=37 Score=36.12 Aligned_cols=89 Identities=24% Similarity=0.352 Sum_probs=39.4
Q ss_pred HhhcCCCCHHHHHHHHHHhcCCCh------hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 011744 52 VKDSQDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (478)
Q Consensus 52 ~kdL~~~n~~vr~~AL~~l~~i~~------~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l 125 (478)
.+...+++-.||-..++.++.+.+ .++.+.+...+..-+.|..|.||..|+.|+.++-. +|.. ++......+
T Consensus 91 LRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~d-ee~~v~n~l 168 (892)
T KOG2025|consen 91 LRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKD-EECPVVNLL 168 (892)
T ss_pred HhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCC-CcccHHHHH
Confidence 444445555555444444443322 23333333444444455555555555555555322 2211 011234444
Q ss_pred HHhh-cCCChhhHHHHHH
Q 011744 126 KDLI-SDNNPMVVANAVA 142 (478)
Q Consensus 126 ~~lL-~d~~~~V~~~a~~ 142 (478)
..++ +|+++.|+++|+.
T Consensus 169 ~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 169 KDLIQNDPSDEVRRAALS 186 (892)
T ss_pred HHHHhcCCcHHHHHHHHH
Confidence 4444 3555555555543
No 184
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=88.42 E-value=29 Score=36.81 Aligned_cols=134 Identities=12% Similarity=0.122 Sum_probs=94.1
Q ss_pred hccCCChhHHHHHHHHHHHhcccCchH--HHHHHHHHHhhcCCCC--HHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC
Q 011744 17 CMQTENLELKKLVYLYLINYAKSQPDL--AILAVNTFVKDSQDPN--PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD 92 (478)
Q Consensus 17 l~~s~~~~~Krl~yl~l~~~~~~~~e~--~~l~in~l~kdL~~~n--~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~ 92 (478)
-+..++.+.|+=-+-.+..-.+.-||. ...+.+.+..++...+ ..+....+..--.+..+++-..++|.|.+++..
T Consensus 262 el~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~ 341 (690)
T KOG1243|consen 262 ELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS 341 (690)
T ss_pred hcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence 356688888888877777755555552 3334455556665443 333334444444455667777899999999999
Q ss_pred CChHHHHHHHHHHHHHHh-hcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 93 DDPYVRKTAAICVAKLYD-INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 93 ~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
.+..||-.=..-+-+... ..++.+.+ ...|.+...+.|.|+.++..++..+..++..-
T Consensus 342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d-~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL 400 (690)
T KOG1243|consen 342 PDRQIRLLLLQYIEKYIDHLTKQILND-QIFPHVALGFLDTNATLREQTLKSMAVLAPKL 400 (690)
T ss_pred cchHHHHHHHHhHHHHhhhcCHHhhcc-hhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh
Confidence 999999877776666554 34454543 77899999999999999999999998876554
No 185
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=88.41 E-value=0.75 Score=41.73 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=56.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccc
Q 011744 49 NTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (478)
Q Consensus 49 n~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~ 117 (478)
..+.+=.+|+|+..|..|+..+......+..+.+...+...+.|++.+||+....++..+++.+|+.+.
T Consensus 123 ~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 123 ELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp HHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHH
Confidence 344555679999999999988877666677778888899999999999999999999999999998654
No 186
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.37 E-value=41 Score=36.42 Aligned_cols=196 Identities=15% Similarity=0.200 Sum_probs=110.1
Q ss_pred HHHHHHHHhhcCC----CCHHHHHHHHHHhcCCC---hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc---
Q 011744 45 ILAVNTFVKDSQD----PNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE--- 114 (478)
Q Consensus 45 ~l~in~l~kdL~~----~n~~vr~~AL~~l~~i~---~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~--- 114 (478)
--.+|.+..||.+ ++|..++.|++.+-..+ +++..=.++|.+...+..+++.|-+-||.|+-++......
T Consensus 455 ~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~ 534 (960)
T KOG1992|consen 455 DFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNA 534 (960)
T ss_pred HHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccc
Confidence 3356777888876 55889999999777665 4677778889999999999999999999999887643221
Q ss_pred -ccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhcc----
Q 011744 115 -LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---- 189 (478)
Q Consensus 115 -~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~---- 189 (478)
......+.|.+..++ ..++..... ++. ..++++--.++|+++...
T Consensus 535 ~if~~~~iap~~~~ll-----------~nLf~a~s~--p~~-----------------~EneylmKaImRii~i~~~~i~ 584 (960)
T KOG1992|consen 535 KIFGAEDIAPFVEILL-----------TNLFKALSL--PGK-----------------AENEYLMKAIMRIISILQSAII 584 (960)
T ss_pred cccchhhcchHHHHHH-----------HHHHHhccC--Ccc-----------------cccHHHHHHHHHHHHhCHHhhh
Confidence 110001111111111 111100000 000 124454444555554321
Q ss_pred CCChHHHHHHHHHhhhhhcCCC----hHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhcCC-hhHHHHHHHHH
Q 011744 190 AADAREAENIVERVTPRLQHAN----CAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAE-PEIQYVALRNI 264 (478)
Q Consensus 190 ~~~~~~~~~~l~~l~~~l~~~~----~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~ir~~aL~~l 264 (478)
|..+.-...+-+.+...-++++ ..-+||++-+++..... .+|+++..+..++.|.+...++.| .+.---+++.+
T Consensus 585 p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~-~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQll 663 (960)
T KOG1992|consen 585 PHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCK-ANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLL 663 (960)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122222222223322 25678888777665432 356777777677777777777644 45555578888
Q ss_pred HHHHhhC
Q 011744 265 NLIVQRR 271 (478)
Q Consensus 265 ~~l~~~~ 271 (478)
+.++..+
T Consensus 664 a~lve~~ 670 (960)
T KOG1992|consen 664 AVLVEHS 670 (960)
T ss_pred HHHHHhc
Confidence 8888764
No 187
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.90 E-value=4.3 Score=43.92 Aligned_cols=130 Identities=14% Similarity=0.223 Sum_probs=60.9
Q ss_pred HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCcc-chhhccc-----eeeeccCCChhHHHHHHHHHHHhcCc------c
Q 011744 241 KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT-ILAHEIK-----VFFCKYNDPIYVKMEKLEIMIKLASD------R 307 (478)
Q Consensus 241 ~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~-~~~~~~~-----~~~~l~~dd~~ir~~al~lL~~l~~~------~ 307 (478)
.++|.+....+ .....|..-+.+|.....+-|. .+.+..+ .+.++...|..+|-.+++++.-+..+ +
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 34444444333 2334555555555555555443 2333322 12344555556666666655443322 1
Q ss_pred cHHHHHHHHHHhhhhcC---HHHHHHHHHHHHHHHhcchh-----hHHHHHHHHHHHhcccchhHHHHHHH
Q 011744 308 NIDQVLLEFKEYATEVD---VDFVRKAVRAIGRCAIKLER-----AAERCISVLLELIKIKVNYVVQEAII 370 (478)
Q Consensus 308 n~~~Iv~~L~~~l~~~d---~~~r~~~v~~i~~l~~~~~~-----~~~~~i~~ll~ll~~~~~~v~~~~~~ 370 (478)
-+..+|+.++.--++.| ..+|..+++.+..+.+..|. .....+..+.+.|.+....||.|++.
T Consensus 947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 24445555554443333 34555556666655554331 22344444555555555455555443
No 188
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.66 E-value=7.6 Score=36.88 Aligned_cols=142 Identities=12% Similarity=0.199 Sum_probs=97.0
Q ss_pred HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchh
Q 011744 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA 276 (478)
Q Consensus 198 ~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~ 276 (478)
..+......|.+.+|.+..++...+-.+..+ .++.+......++-.++.-+. ..+-+-.+|+.++..+.+.+.+.+.
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~f--h~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEF--HPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777788899999999998888766532 344444333333333333332 3456888888899998887655443
Q ss_pred hccce----eeeccC-CChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhc
Q 011744 277 HEIKV----FFCKYN-DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (478)
Q Consensus 277 ~~~~~----~~~l~~-dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~ 341 (478)
...+. +....+ |...||..|-+.|.+|++.-+-..+++.|..++...++-+|+.+.....++..+
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 33321 211223 348899999999999999999999999999999888888887776555444444
No 189
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=87.51 E-value=23 Score=32.63 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHhcCCChh--hhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc
Q 011744 56 QDPNPLIRALAVRTMGCIRVD--KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE 114 (478)
Q Consensus 56 ~~~n~~vr~~AL~~l~~i~~~--e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~ 114 (478)
+.++|......+++|+..+.. ...+.+...+..+...+....+--+..-+.++-...+-
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r 71 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR 71 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch
Confidence 345555555555555554322 33444444444444444444444555555555554443
No 190
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.20 E-value=14 Score=39.24 Aligned_cols=203 Identities=11% Similarity=0.092 Sum_probs=128.8
Q ss_pred cCChhHHHHHHHHHHHHHhhCccc--hhhccceeee-ccCCChhHHHHHHHHHHHhc--Cccc--HHHHHHHHHHhhh-h
Q 011744 251 SAEPEIQYVALRNINLIVQRRPTI--LAHEIKVFFC-KYNDPIYVKMEKLEIMIKLA--SDRN--IDQVLLEFKEYAT-E 322 (478)
Q Consensus 251 ~~~~~ir~~aL~~l~~l~~~~~~~--~~~~~~~~~~-l~~dd~~ir~~al~lL~~l~--~~~n--~~~Iv~~L~~~l~-~ 322 (478)
.+|+.-|+.-++.|.++....|.- +++.++.+.- +.++. .--..+.+...++ ...+ ...+++.|..-++ .
T Consensus 284 ~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~ 361 (700)
T KOG2137|consen 284 QKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSAS 361 (700)
T ss_pred ccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccC
Confidence 367888888899999988876642 2222332211 11111 1111233333333 2233 4467777775555 4
Q ss_pred cCHHHHHHHHHHHHHHHhcch--hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCC--cchHHHHHHHHhhcCCCC
Q 011744 323 VDVDFVRKAVRAIGRCAIKLE--RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP--NTYESIIATLCESLDTLD 398 (478)
Q Consensus 323 ~d~~~r~~~v~~i~~l~~~~~--~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~--~~~~~~i~~L~~~l~~~~ 398 (478)
.+.+...-+++.+--+.++.+ ...+.+++.+...+++..-.+.+.++..+..+...-+ -.++.++.++...--..+
T Consensus 362 ~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 362 DPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTT 441 (700)
T ss_pred CcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhccc
Confidence 445566677777777788764 3456778888888888887788888888777664432 344556666554322233
Q ss_pred hhhHHHHHHHHhhcccCccCC--HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCC
Q 011744 399 EPEAKASMIWIIGEYAERIDN--ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (478)
Q Consensus 399 ~~~~~~~~~~ilGE~~~~~~~--~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~ 455 (478)
...++..+.-++|+..+..+. ..+.+-.+.+.....++.+....+...-++..+.++
T Consensus 442 ~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 455677888888888866554 346666677777778899999999999999888877
No 191
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=86.55 E-value=6.7 Score=34.48 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=51.8
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh-ccccccc--ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhh
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~-~p~~~~~--~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 150 (478)
+.++|.....+...+..-|--|..++..+.+. .++.+-+ +.++..+++.|+.+|+.|..+++.+|..+...
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 35777788888875555567777777777666 4443321 25778888899999999999999999888544
No 192
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=86.43 E-value=2.7 Score=36.93 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhc
Q 011744 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (478)
Q Consensus 77 e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~ 130 (478)
.+++.++++++++|.+.++.|...+..++.++...++- +.+ .++|..+++|-
T Consensus 76 PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~-vG~-aLvPyyrqLLp 127 (183)
T PF10274_consen 76 PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM-VGE-ALVPYYRQLLP 127 (183)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh-hhH-HHHHHHHHHHH
Confidence 45667788888888888888888888888888554432 221 45555555543
No 193
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.39 E-value=6.4 Score=33.28 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=56.5
Q ss_pred HHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----Chh---hhh-HHHHHHHHhhcCC-CChHHHHHH
Q 011744 31 LYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD---KIT-EYLCDPLQRCLKD-DDPYVRKTA 101 (478)
Q Consensus 31 l~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~---e~~-~~l~~~i~~~l~~-~~~~VRk~A 101 (478)
+-+.-..+.+++-..-++.+|+|-++++||.+...||..+-.+ |.+ +++ ..+...+.+++.+ .++.||.+.
T Consensus 22 l~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~ki 101 (144)
T cd03568 22 LDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKL 101 (144)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHH
Confidence 3344455555666777899999999999999999999866543 221 222 2456667787777 788999998
Q ss_pred HHHHHHHHh
Q 011744 102 AICVAKLYD 110 (478)
Q Consensus 102 ~~al~~i~~ 110 (478)
...+..-..
T Consensus 102 l~li~~W~~ 110 (144)
T cd03568 102 REVVKQWAD 110 (144)
T ss_pred HHHHHHHHH
Confidence 887765443
No 194
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=85.97 E-value=33 Score=34.71 Aligned_cols=160 Identities=12% Similarity=0.129 Sum_probs=93.2
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhH----HHHHHHHHHHhcccch-hHHHHHHHHHHHHHhhCC-cchHH
Q 011744 312 VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA----ERCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYP-NTYES 385 (478)
Q Consensus 312 Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~----~~~i~~ll~ll~~~~~-~v~~~~~~~l~~i~~~~~-~~~~~ 385 (478)
.+..|+.-+.++|+.-|..+-.-+.++-.+++..- +.+.+.+.+.+..... ....++.+.++.+++++. ...+.
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Confidence 44455555566666666655555555555543322 2334444444443333 456888999999987644 33333
Q ss_pred HHHHHHh----hcCCCChhhHHHHHHHHhhcccCccCC-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHH
Q 011744 386 IIATLCE----SLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQ 460 (478)
Q Consensus 386 ~i~~L~~----~l~~~~~~~~~~~~~~ilGE~~~~~~~-~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~ 460 (478)
-...+.+ ....-.-+.......+++..|.+.-+. +..+++.++...+..++.=+-..|.-+..+....|+++.++
T Consensus 214 h~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~ 293 (409)
T PF01603_consen 214 HKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQK 293 (409)
T ss_dssp HHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHH
Confidence 2233322 222212233467778888888765443 67889999999999898888899999999988888766666
Q ss_pred HHHHHHHHHHH
Q 011744 461 MIQVTLKYYTC 471 (478)
Q Consensus 461 ~~~~~l~~~~~ 471 (478)
....+|+.-++
T Consensus 294 i~~~lf~~la~ 304 (409)
T PF01603_consen 294 IMVPLFKRLAK 304 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 195
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=84.55 E-value=2.5 Score=37.23 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcccCchHHHHHHHHHHh-hcCCCCHHHHHHHHHHhcCCC--h------------------------hh
Q 011744 25 LKKLVYLYLINYAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIR--V------------------------DK 77 (478)
Q Consensus 25 ~Krl~yl~l~~~~~~~~e~~~l~in~l~k-dL~~~n~~vr~~AL~~l~~i~--~------------------------~e 77 (478)
.||.-|-|+..++...+....-...+|.. -+.|+++.+|..|+.+++.+- + ..
T Consensus 18 ~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~ 97 (182)
T PF13251_consen 18 DKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLAS 97 (182)
T ss_pred CCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence 36677888888887761111111223322 346899999999999988651 1 01
Q ss_pred hhHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhcc------cccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhh
Q 011744 78 ITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINA------ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 78 ~~~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~p------~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 150 (478)
++..+-..+...+.+ .++.+-.....|+.-+.+..| +.+. .++..+..++.+.|+.|+.+++.+++-+...
T Consensus 98 ~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~--~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 98 MIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT--EVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 222334445555555 466666666777766655444 4444 5677888889999999999999888776543
No 196
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=83.82 E-value=9.9 Score=37.76 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=70.1
Q ss_pred ChHHHHHHHH-HHHHHHhhcccccccccHHHHHHHhhc------CCChhhHHHHHHHHHHHhhhCCCC---------c--
Q 011744 94 DPYVRKTAAI-CVAKLYDINAELVEDRGFLESLKDLIS------DNNPMVVANAVAALAEIEENSSRP---------I-- 155 (478)
Q Consensus 94 ~~~VRk~A~~-al~~i~~~~p~~~~~~~~~~~l~~lL~------d~~~~V~~~a~~~l~~i~~~~~~~---------~-- 155 (478)
+..-|+.||. .+..+.+..++.+.. -+...+...+. ..|+.-.-+|+.+++.++...... .
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~-i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTS-ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 3344444554 444555555554432 23355555665 355666788999998887665210 0
Q ss_pred -ccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCC-hHHHHHHHHHhhhhhcCCChHHHHHHHHHH
Q 011744 156 -FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAAD-AREAENIVERVTPRLQHANCAVVLSAVKMI 222 (478)
Q Consensus 156 -~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i 222 (478)
.+++...+-.-++.-....||++...++.+..+...- ++....+++.+...|.+++..|.--|+.++
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1111111111111111357999999999998876443 344567888888899988888877766543
No 197
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=83.45 E-value=49 Score=32.67 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=61.8
Q ss_pred CChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcC
Q 011744 21 ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLK 91 (478)
Q Consensus 21 ~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~ 91 (478)
.+...||++--++..+++.=|+++.-++++=..-..+.+-.+|..|++-|...+..+....+.+.+.++|.
T Consensus 36 ~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred cchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 45678999999999999999999988888877777889999999999999988877888888888888886
No 198
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.31 E-value=43 Score=31.98 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=36.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHhcCCChh---h---hhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q 011744 50 TFVKDSQDPNPLIRALAVRTMGCIRVD---K---ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (478)
Q Consensus 50 ~l~kdL~~~n~~vr~~AL~~l~~i~~~---e---~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~ 111 (478)
.+.+-+.+.+|.+|..|.+.+..+... . .-...++.+.+++.+..+ -+-|+.|+.+..+.
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 445566677778888777655544322 1 113456667777777666 55666677766553
No 199
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=83.00 E-value=49 Score=32.38 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCChhhhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHH
Q 011744 61 LIRALAVRTMGCIRVDKITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVAN 139 (478)
Q Consensus 61 ~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~-~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~ 139 (478)
..|.+..+.|..+......+.+...+..++. ..++.....++.++.+-+......+++ ..++.+.+-+.|+.+.+|..
T Consensus 2 d~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~-~~~~~~~kGl~~kk~~vR~~ 80 (339)
T PF12074_consen 2 DQRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPK-KVVDAFKKGLKDKKPPVRRA 80 (339)
T ss_pred cHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCH-HHHHHHHHHhcCCCCcHHHH
Confidence 3566666777766654455555555555554 478888888888888766655222332 67899999999999999998
Q ss_pred HHHHHHHHhh
Q 011744 140 AVAALAEIEE 149 (478)
Q Consensus 140 a~~~l~~i~~ 149 (478)
-+..++.+..
T Consensus 81 w~~~~~~~~~ 90 (339)
T PF12074_consen 81 WLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHh
Confidence 8888888765
No 200
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=82.85 E-value=1.6 Score=43.57 Aligned_cols=129 Identities=19% Similarity=0.253 Sum_probs=88.4
Q ss_pred ccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHH-hhcCCCCHHHHHHHHHHhcCC--Chhhhh---------------
Q 011744 18 MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFV-KDSQDPNPLIRALAVRTMGCI--RVDKIT--------------- 79 (478)
Q Consensus 18 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~-kdL~~~n~~vr~~AL~~l~~i--~~~e~~--------------- 79 (478)
++..+.-.||.-|=|+..++...|+.. .+++. -.|+++||.-|++||+.++.+ ++..+.
T Consensus 21 ~~~~~~~~~~~~ygyw~~~~pd~~~~g---~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~ 97 (728)
T KOG4535|consen 21 LSTIKSIEKKVLYGYWSAFIPDTPELG---SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFS 97 (728)
T ss_pred HHHHhhhhhhhhhceeeeecCCCCCCC---CceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchH
Confidence 344566789999999999998888754 44443 478999999999999988765 111111
Q ss_pred -------HHHHHHHHhhc-CCCChHHHHHHHHHHHHHHhhcccc-cc---cccHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 011744 80 -------EYLCDPLQRCL-KDDDPYVRKTAAICVAKLYDINAEL-VE---DRGFLESLKDLISDNNPMVVANAVAALAEI 147 (478)
Q Consensus 80 -------~~l~~~i~~~l-~~~~~~VRk~A~~al~~i~~~~p~~-~~---~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 147 (478)
..+...+.-.+ ...+|.+--..+.|+..+.+..|-. ++ -.++...++++++++|+.|+.+++..+.-+
T Consensus 98 v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~ 177 (728)
T KOG4535|consen 98 VMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAI 177 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Confidence 11222222233 3456667777788888887766621 11 025678889999999999999999888766
Q ss_pred hh
Q 011744 148 EE 149 (478)
Q Consensus 148 ~~ 149 (478)
..
T Consensus 178 v~ 179 (728)
T KOG4535|consen 178 VS 179 (728)
T ss_pred Hh
Confidence 54
No 201
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=82.58 E-value=29 Score=31.33 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=49.1
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC
Q 011744 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (478)
Q Consensus 84 ~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 152 (478)
+.+.+...|++..+|+.|+.+..+..+. .+ .+ .+...+..++.|++..|+.+.-.+|.++.+.++
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~~~~-~~-~~--~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~ 182 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKYKEK-TD-TD--LLFEIILANLGSKEFFIRKAIGWALREYSKTNP 182 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHc-cC-HH--HHHHHHHHhCCChHHHHHHHHHHHHHHHhccCH
Confidence 4477777899999999999987664432 22 11 344666778889999999999999999988764
No 202
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=82.06 E-value=11 Score=31.73 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=54.6
Q ss_pred HHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----Ch---hhhh-HHHHHHHHhhcCC------CChH
Q 011744 31 LYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RV---DKIT-EYLCDPLQRCLKD------DDPY 96 (478)
Q Consensus 31 l~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~---~e~~-~~l~~~i~~~l~~------~~~~ 96 (478)
+-+.-..+.+++....++-.|+|-++++||.+.-.||..|-.+ |. .+++ ..+...+.+++.. .++.
T Consensus 23 leicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~ 102 (139)
T cd03567 23 QAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEK 102 (139)
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHH
Confidence 3444455566677778899999999999999999999865432 32 2333 3455667777742 5778
Q ss_pred HHHHHHHHHHHHH
Q 011744 97 VRKTAAICVAKLY 109 (478)
Q Consensus 97 VRk~A~~al~~i~ 109 (478)
||.+....+..-.
T Consensus 103 Vk~kil~li~~W~ 115 (139)
T cd03567 103 VKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887766433
No 203
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=81.69 E-value=4.3 Score=40.33 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHhcCCC---hhhhhHHHHHHHHhhcCCCChHHHHHHHHHH
Q 011744 57 DPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICV 105 (478)
Q Consensus 57 ~~n~~vr~~AL~~l~~i~---~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al 105 (478)
+..|..|+-|++++...+ +++....++|.+.++|.+++..|+.-||.|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 455666666666655443 3455556666666666666666666666653
No 204
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=81.23 E-value=77 Score=33.45 Aligned_cols=142 Identities=9% Similarity=0.110 Sum_probs=92.2
Q ss_pred CCChhHHHHHHHHH-------HHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHH-----HHHHHHH
Q 011744 287 NDPIYVKMEKLEIM-------IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAE-----RCISVLL 354 (478)
Q Consensus 287 ~dd~~ir~~al~lL-------~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~-----~~i~~ll 354 (478)
..|...++.|+..+ +.+-+.-+-..+.+-|.+-+.+++.-+...+..+|++++..|++..+ ..+|.+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 44556666666654 23333334445566666666777777878888999999999865433 4479999
Q ss_pred HHhcccchhHHHHHHHHHHHHHhhCCcchH-----HHHHH-HHhhcCCCChhhHHHHHHHHhhcccCccCCHHHHHHHHh
Q 011744 355 ELIKIKVNYVVQEAIIVIKDIFRRYPNTYE-----SIIAT-LCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFL 428 (478)
Q Consensus 355 ~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~-----~~i~~-L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~~~~~l~~l~ 428 (478)
..+++.+..++..+..+++.++-+..+.+. ++-.. +.++..+ .++.+...|.-++..+... +.+.++.+.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd-~d~~Vqeq~fqllRNl~c~---~~~svdfll 543 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND-PDWAVQEQCFQLLRNLTCN---SRKSVDFLL 543 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC-CCHHHHHHHHHHHHHhhcC---cHHHHHHHH
Confidence 999999988999999999998866554322 22222 2333333 4677788888777776543 334445555
Q ss_pred hcCC
Q 011744 429 ESFP 432 (478)
Q Consensus 429 ~~~~ 432 (478)
+.|.
T Consensus 544 ~~~~ 547 (678)
T KOG1293|consen 544 EKFK 547 (678)
T ss_pred Hhhh
Confidence 4443
No 205
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=80.83 E-value=16 Score=34.85 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=53.7
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccc----ccc----cHHHHHHHhhc--------CCChhhHHH
Q 011744 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV----EDR----GFLESLKDLIS--------DNNPMVVAN 139 (478)
Q Consensus 76 ~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~----~~~----~~~~~l~~lL~--------d~~~~V~~~ 139 (478)
.+..+-++|.+..++.|.++.+|..++.++.++....|... ... -+.+.+..++. ++...+...
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 35566789999999999999999999999999998665432 222 23455555555 566667777
Q ss_pred HHHHHHHHhh
Q 011744 140 AVAALAEIEE 149 (478)
Q Consensus 140 a~~~l~~i~~ 149 (478)
|..++..+.+
T Consensus 194 ay~~L~~L~~ 203 (282)
T PF10521_consen 194 AYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHH
Confidence 7777776644
No 206
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=80.55 E-value=5.2 Score=35.66 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=52.6
Q ss_pred hhcCCCCHHHHHHHHHHhcCCChh-hhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccc
Q 011744 53 KDSQDPNPLIRALAVRTMGCIRVD-KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (478)
Q Consensus 53 kdL~~~n~~vr~~AL~~l~~i~~~-e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~ 117 (478)
+=..|+|+..|..|.-++...... ...+.+...+..++.|++.+||+....++..+++.+|+.+.
T Consensus 112 ~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~ 177 (197)
T cd06561 112 EWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVI 177 (197)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 334689999998888877664433 56677788889999999999999999999999999887554
No 207
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=80.32 E-value=23 Score=30.58 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=25.7
Q ss_pred hHHHHhhc--CChhHHHHHHHHHHHHHhhCccchh
Q 011744 244 PPLVTLLS--AEPEIQYVALRNINLIVQRRPTILA 276 (478)
Q Consensus 244 ~~l~~ll~--~~~~ir~~aL~~l~~l~~~~~~~~~ 276 (478)
+.|..++. .+..+|..+++.++-++..+|-..+
T Consensus 13 ~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 13 DILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 34556664 4588999999999999998886554
No 208
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=80.26 E-value=43 Score=32.91 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=80.4
Q ss_pred CCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccC---chHHHHHHHHHHhhcCCCCHHHHHHHHHHhc------CCCh
Q 011744 5 KDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLIRALAVRTMG------CIRV 75 (478)
Q Consensus 5 ~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~---~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~------~i~~ 75 (478)
.+...+|-.+++.+.+++...++.++--+..=..-. |-+...+...+..-+.. |-..-...++.+. ++..
T Consensus 174 ~Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~l 252 (343)
T cd08050 174 KELQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHL 252 (343)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCch
Confidence 344556778888887777777777644333211111 22233333333333332 3322222223222 2344
Q ss_pred hhhhHHHHHHHHhhcC----------CCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCC--hhhHHHHH
Q 011744 76 DKITEYLCDPLQRCLK----------DDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNN--PMVVANAV 141 (478)
Q Consensus 76 ~e~~~~l~~~i~~~l~----------~~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~~--~~V~~~a~ 141 (478)
......++|.+..|+. +.+..+|..|+..+.++.+++...... +.+...+.+.+.|++ ....++|+
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi 332 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI 332 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence 5667778888888883 244699999999999999876554331 133444444444433 33478888
Q ss_pred HHHHHHh
Q 011744 142 AALAEIE 148 (478)
Q Consensus 142 ~~l~~i~ 148 (478)
..|..+.
T Consensus 333 ~GL~~lG 339 (343)
T cd08050 333 VGLSALG 339 (343)
T ss_pred HHHHHhC
Confidence 8777764
No 209
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=80.01 E-value=5 Score=34.82 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 93 DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 93 ~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
.--.+||.|..|++.+....++.++...+.+.+..-|.| ++.++.-+...+..++...
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 334799999999999998877766655788889999999 8999988888888876654
No 210
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.56 E-value=63 Score=31.37 Aligned_cols=142 Identities=13% Similarity=0.203 Sum_probs=80.0
Q ss_pred hHHHHhhc--CChhHHHHHHHHHHHHHhhCccchhh-----ccce-eeeccC-CC---hhHHHHHHHHHHHhcCcccHH-
Q 011744 244 PPLVTLLS--AEPEIQYVALRNINLIVQRRPTILAH-----EIKV-FFCKYN-DP---IYVKMEKLEIMIKLASDRNID- 310 (478)
Q Consensus 244 ~~l~~ll~--~~~~ir~~aL~~l~~l~~~~~~~~~~-----~~~~-~~~l~~-dd---~~ir~~al~lL~~l~~~~n~~- 310 (478)
..|+..+. -+|++--...-+|..++-++ ++.+. -++. +.|+.+ .+ ...-+.++.+|.+++..+.++
T Consensus 244 ~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs 322 (461)
T KOG4199|consen 244 TALTEALQAGIDPDSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKS 322 (461)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHH
Confidence 34445553 35777666667777776543 22211 1222 233332 22 345578899999998665544
Q ss_pred HHHHH-----HHHhh--hhcCHHHHHHHHHHHHHHHhcchhhHHHHHH-----HHHHHhcccc--hhHHHHHHHHHHHHH
Q 011744 311 QVLLE-----FKEYA--TEVDVDFVRKAVRAIGRCAIKLERAAERCIS-----VLLELIKIKV--NYVVQEAIIVIKDIF 376 (478)
Q Consensus 311 ~Iv~~-----L~~~l--~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~-----~ll~ll~~~~--~~v~~~~~~~l~~i~ 376 (478)
.||+. +...+ ...||.+..++...|+.++.+.|..+..+++ ..++-++--. ..+...+...+++++
T Consensus 323 ~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv 402 (461)
T KOG4199|consen 323 TIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIV 402 (461)
T ss_pred HHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 45442 33222 2457788888888899999887766555543 3334333321 235556667778877
Q ss_pred hhCCcchHHH
Q 011744 377 RRYPNTYESI 386 (478)
Q Consensus 377 ~~~~~~~~~~ 386 (478)
.+..+.++..
T Consensus 403 ~rs~~~~~~~ 412 (461)
T KOG4199|consen 403 VRSAENRTIL 412 (461)
T ss_pred HhhhhccchH
Confidence 6655554443
No 211
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=79.24 E-value=91 Score=33.36 Aligned_cols=135 Identities=14% Similarity=0.242 Sum_probs=79.5
Q ss_pred HHhhhHHHHhhc-CC-hhHHHHHHHHHHHHHhhCc-cchhhc-ccee-eeccCCChhHHHHHHHHHHHhc---CcccHH-
Q 011744 240 KKMAPPLVTLLS-AE-PEIQYVALRNINLIVQRRP-TILAHE-IKVF-FCKYNDPIYVKMEKLEIMIKLA---SDRNID- 310 (478)
Q Consensus 240 ~~~~~~l~~ll~-~~-~~ir~~aL~~l~~l~~~~~-~~~~~~-~~~~-~~l~~dd~~ir~~al~lL~~l~---~~~n~~- 310 (478)
..+.+.|....+ ++ -.+.-..++.+-.|.++.| +-+..+ ++.+ .++.+++..+..+++..+.... +-..++
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~ 427 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQ 427 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHH
Confidence 355666666665 33 3456666676766666643 445544 3433 4556667888888988886654 333443
Q ss_pred HHHHHHHHh-hhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHH
Q 011744 311 QVLLEFKEY-ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKI---KVNYVVQEAIIVIKDIF 376 (478)
Q Consensus 311 ~Iv~~L~~~-l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~---~~~~v~~~~~~~l~~i~ 376 (478)
.|++.+.+- ....+..++.+++.+++.+.+.. +.-.+++.++.+++. .+..+....+.....+.
T Consensus 428 ~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l--D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 428 AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL--DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HHHHHhhcchhcccchHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 466666633 45677888888888888888653 333456666555544 33444444444444333
No 212
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=79.19 E-value=57 Score=30.69 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHHHH
Q 011744 420 ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQ 463 (478)
Q Consensus 420 ~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~ 463 (478)
++..+..+.+++...++.+|.-.|.++.-.+.+++.+.+.+-..
T Consensus 206 a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~ 249 (262)
T PF14500_consen 206 APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWS 249 (262)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 45677777888888888899999988888888887643333333
No 213
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.03 E-value=79 Score=32.20 Aligned_cols=85 Identities=18% Similarity=0.307 Sum_probs=55.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCCh-----hhhhH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHh---hccccccc
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV-----DKITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYD---INAELVED 118 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~~-----~e~~~-~l~~~i~~~l~~~~~~VRk~A~~al~~i~~---~~p~~~~~ 118 (478)
+.-+.|.|+-.|...--+..+++-++.. -+|.+ ..+..+.+++...+|..|+...+-+..+.- .-|..+.
T Consensus 306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~- 384 (791)
T KOG1222|consen 306 VAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN- 384 (791)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh-
Confidence 4455677777776666666666665431 12222 345557778888999999999888877532 2244443
Q ss_pred ccHHHHHHHhhcCCC
Q 011744 119 RGFLESLKDLISDNN 133 (478)
Q Consensus 119 ~~~~~~l~~lL~d~~ 133 (478)
.+++|.+..++.+..
T Consensus 385 ~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 385 GGLLPHLASLLDSDT 399 (791)
T ss_pred ccchHHHHHHhCCcc
Confidence 488899999887544
No 214
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=78.87 E-value=23 Score=35.39 Aligned_cols=142 Identities=15% Similarity=0.137 Sum_probs=94.2
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhh---------cCCCCHHHHHHHHHHhcCCChhh---
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKD---------SQDPNPLIRALAVRTMGCIRVDK--- 77 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kd---------L~~~n~~vr~~AL~~l~~i~~~e--- 77 (478)
++--+...+.|+|....-+|-+|+..++..++-...++-+.+.+- --+.|-.++..++.++-++..|-
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 344555678999999999999999999998866555554443222 22567778888888888876542
Q ss_pred --hhH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc----cccccccHHHHHHHhhcCCCh-hhHHHHHHHHHHHhh
Q 011744 78 --ITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLISDNNP-MVVANAVAALAEIEE 149 (478)
Q Consensus 78 --~~~-~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p----~~~~~~~~~~~l~~lL~d~~~-~V~~~a~~~l~~i~~ 149 (478)
+++ .+...|...++...|.|--+-.-++.-+....| ++..++..+..+..+-+.+|. ||..-+..++.-+.+
T Consensus 396 a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIk 475 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIK 475 (604)
T ss_pred hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHH
Confidence 232 255567777787778777776665544433322 233344566777777777764 477777777766655
Q ss_pred hC
Q 011744 150 NS 151 (478)
Q Consensus 150 ~~ 151 (478)
+.
T Consensus 476 Hs 477 (604)
T KOG4500|consen 476 HS 477 (604)
T ss_pred hh
Confidence 53
No 215
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=78.83 E-value=79 Score=32.08 Aligned_cols=329 Identities=13% Similarity=0.153 Sum_probs=172.2
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHH
Q 011744 60 PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVAN 139 (478)
Q Consensus 60 ~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~ 139 (478)
+.+...=++.++.+..++.++++..-+-.++.+....++- +......+|+ .+.+.+. +|..+|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~-----f~~~~~~~~~-----~~~~fl~-lL~~~d~~i~~~ 120 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKL-----FHDDALLKKK-----TWEPFFN-LLNRQDQFIVHM 120 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHH-----HHHHhhcccc-----chHHHHH-HHcCCchhHHHH
Confidence 6667777788888888999999888888888774333321 1111112243 2434444 677778888888
Q ss_pred HHHHHHHHhhhCCCCcccccH-HHHHHHHHhcccCC-hhhHHHHHHHHhhccCCCh-HHH---HHHHHHhhhhhcC--CC
Q 011744 140 AVAALAEIEENSSRPIFEITS-HTLSKLLTALNECT-EWGQVFILDALSRYKAADA-REA---ENIVERVTPRLQH--AN 211 (478)
Q Consensus 140 a~~~l~~i~~~~~~~~~~~~~-~~~~~Ll~~l~~~~-~~~q~~ll~~l~~~~~~~~-~~~---~~~l~~l~~~l~~--~~ 211 (478)
|+..+..+....+........ ..+..+.+.+...+ .-.+...++.++.+...+. ... .+.++.+.+.++. .+
T Consensus 121 a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~ 200 (429)
T cd00256 121 SFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLG 200 (429)
T ss_pred HHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcccc
Confidence 888888776543321111111 12233444443322 3334334455544332221 110 1244555555654 24
Q ss_pred hHHHHHHHHHHHHhhhhcCChHHHHHHH-HHhhhHHHHhhcCC--hhHHHHHHHHHHHHHhhC----cc------chhhc
Q 011744 212 CAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLSAE--PEIQYVALRNINLIVQRR----PT------ILAHE 278 (478)
Q Consensus 212 ~~V~~ea~~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~--~~ir~~aL~~l~~l~~~~----~~------~~~~~ 278 (478)
.-..|+++-++..++ + +++...... .++++.+..++... .-+-.+++.++..+.... +. .+...
T Consensus 201 ~Ql~Y~~ll~lWlLS--F-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~ 277 (429)
T cd00256 201 FQLQYQSIFCIWLLT--F-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK 277 (429)
T ss_pred HHHHHHHHHHHHHHh--c-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC
Confidence 578888877776542 2 223222211 25677777777522 234456677777777632 11 11111
Q ss_pred ----cceeeeccCCChhHHHHHHHHHHH-----hcCcccHHHHHHHHH-Hhhhhc----CHHHHHHHHHHHHHHHhcchh
Q 011744 279 ----IKVFFCKYNDPIYVKMEKLEIMIK-----LASDRNIDQVLLEFK-EYATEV----DVDFVRKAVRAIGRCAIKLER 344 (478)
Q Consensus 279 ----~~~~~~l~~dd~~ir~~al~lL~~-----l~~~~n~~~Iv~~L~-~~l~~~----d~~~r~~~v~~i~~l~~~~~~ 344 (478)
+..+....=.|+.+. ..++-|.. +-+-+++++...|+. ..++.+ ++.|=++=+.++ ..
T Consensus 278 l~~~l~~L~~rk~~DedL~-edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf-------~~ 349 (429)
T cd00256 278 VLKTLQSLEQRKYDDEDLT-DDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRL-------NE 349 (429)
T ss_pred hHHHHHHHhcCCCCcHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHH-------Hh
Confidence 112221111222332 22332222 223456888888877 444432 345655543333 23
Q ss_pred hHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHhhCCcchHH-----HHHHHHhhcCCCChhhHHHHHHHHhh
Q 011744 345 AAERCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYPNTYES-----IIATLCESLDTLDEPEAKASMIWIIG 411 (478)
Q Consensus 345 ~~~~~i~~ll~ll~~~~~-~v~~~~~~~l~~i~~~~~~~~~~-----~i~~L~~~l~~~~~~~~~~~~~~ilG 411 (478)
+.-..+..+.+++..+++ .+..-+..-++++++.+|+-+.- +=..+++.+.+ .+++++.-+.-.++
T Consensus 350 ~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h-~d~~Vr~eAL~avQ 421 (429)
T cd00256 350 KNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNH-EDPNVRYEALLAVQ 421 (429)
T ss_pred cchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 334567888999865543 34445567888999999975422 12245566665 47888766655544
No 216
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=78.14 E-value=32 Score=32.99 Aligned_cols=240 Identities=10% Similarity=0.013 Sum_probs=123.5
Q ss_pred HhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHH-HHH-HhhhHHHHhhc---CChhHHHHHHHHHHHHHhhCccch-
Q 011744 202 RVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN-LCK-KMAPPLVTLLS---AEPEIQYVALRNINLIVQRRPTIL- 275 (478)
Q Consensus 202 ~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~-~~~-~~~~~l~~ll~---~~~~ir~~aL~~l~~l~~~~~~~~- 275 (478)
.+..++++.++.-++=|++++..+.- .++.-.. +.. .+...+..+++ .+..++|-.|-.+..+.-. |...
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~~---~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aq 228 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLEF---DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQ 228 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHH
Confidence 33344455555556666666655421 1221110 111 23333444553 3567888888887777542 2222
Q ss_pred --hhcccee----eeccCCC-hhHHHHHHHHHHHhcCcccHHHHHHHHHHh-----------hhhcCHHHHHHHHHHHHH
Q 011744 276 --AHEIKVF----FCKYNDP-IYVKMEKLEIMIKLASDRNIDQVLLEFKEY-----------ATEVDVDFVRKAVRAIGR 337 (478)
Q Consensus 276 --~~~~~~~----~~l~~dd-~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~-----------l~~~d~~~r~~~v~~i~~ 337 (478)
+...+.| ...+.+- ..|-|..+.++.++++..--+.|..-++.. -+.+|++++.++=+-=..
T Consensus 229 di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~ 308 (432)
T COG5231 229 DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSR 308 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 2222111 1112222 456667777888888754323332222211 123566666554332233
Q ss_pred HHhcchh--hHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhccc
Q 011744 338 CAIKLER--AAERCISVLL-ELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYA 414 (478)
Q Consensus 338 l~~~~~~--~~~~~i~~ll-~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~ 414 (478)
+.+.+.+ ..+.|+.-+- ..+.-+..+...+.|..=.+.+.++. -.++..|.++++.....-..+.++-=+|.+.
T Consensus 309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdn---y~i~k~L~~~lq~n~~nt~i~vAc~Di~~~V 385 (432)
T COG5231 309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDN---YEIVKVLKKYLQSNNPNTWICVACSDIFQLV 385 (432)
T ss_pred HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhh---HHHHHHHHHHHhcCCCCceEeeeHhhHHHHH
Confidence 3333221 2233443332 33445566788889976555543322 2468888888876433323666666777777
Q ss_pred CccCCHHHHHHH------HhhcCCCCCHHHHHHHHHHHHH
Q 011744 415 ERIDNADELLES------FLESFPEEPAQVQLQLLTATVK 448 (478)
Q Consensus 415 ~~~~~~~~~l~~------l~~~~~~~~~~vk~~il~a~~K 448 (478)
...++..+++.. +++-+...+++||...|.|.--
T Consensus 386 r~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~ 425 (432)
T COG5231 386 RASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQT 425 (432)
T ss_pred HhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHH
Confidence 776665444433 3344456688999988887643
No 217
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.01 E-value=53 Score=36.73 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhhCccchhhc--ccee----eeccCCChhHHHHHHHHHHHh-c-CcccHHHHHHHHH--Hhhh---h-
Q 011744 257 QYVALRNINLIVQRRPTILAHE--IKVF----FCKYNDPIYVKMEKLEIMIKL-A-SDRNIDQVLLEFK--EYAT---E- 322 (478)
Q Consensus 257 r~~aL~~l~~l~~~~~~~~~~~--~~~~----~~l~~dd~~ir~~al~lL~~l-~-~~~n~~~Iv~~L~--~~l~---~- 322 (478)
|+-||..|.++..-.|=.+.-- +.+| ..|.+.-..+|-.-.-+-.++ + +++.-.++|++=. .|++ +
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 5667777777776555332211 1222 223344455655444443333 2 5555557777722 2332 2
Q ss_pred --cCHHHHHHHHHHHHHHHhcchhhH-----HHHHHHHHHHhccc-chhHHHHHHHHHHHHHhhCCcc-----hHHHHHH
Q 011744 323 --VDVDFVRKAVRAIGRCAIKLERAA-----ERCISVLLELIKIK-VNYVVQEAIIVIKDIFRRYPNT-----YESIIAT 389 (478)
Q Consensus 323 --~d~~~r~~~v~~i~~l~~~~~~~~-----~~~i~~ll~ll~~~-~~~v~~~~~~~l~~i~~~~~~~-----~~~~i~~ 389 (478)
-+++=|..++.-++.++..|+-.. ..++...+..+.+. .+-.++=+.-.++.+.+++++. +..+.++
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 235777777888888888875433 34566777777774 4567776777788888888765 3557788
Q ss_pred HHhhcCCCChhhHHHHHHHHhhcccCc
Q 011744 390 LCESLDTLDEPEAKASMIWIIGEYAER 416 (478)
Q Consensus 390 L~~~l~~~~~~~~~~~~~~ilGE~~~~ 416 (478)
|...|.+ +-|++++++++.+|-|-.-
T Consensus 647 L~~~LsD-~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 647 LILLLSD-PVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHhcC-ccHHHHHHHHHHHHHHhcc
Confidence 8887876 4699999999999988653
No 218
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=77.74 E-value=2.7 Score=24.58 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCChhhhhHH
Q 011744 61 LIRALAVRTMGCIRVDKITEY 81 (478)
Q Consensus 61 ~vr~~AL~~l~~i~~~e~~~~ 81 (478)
.+|..|..+|+++++++.++.
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~ 22 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPA 22 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHH
Confidence 467777777777776666655
No 219
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.72 E-value=86 Score=32.50 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=84.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhc--CCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHH
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMG--CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~--~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~ 124 (478)
...++.|-+=...++.++-||--++ .++..+-.+..+-.+.+.+++++...|-+|++.+.-.|.-.. .+ +..+.
T Consensus 414 gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~--~e--evl~l 489 (881)
T COG5110 414 GLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQ--AE--EVLEL 489 (881)
T ss_pred hHHHHHHHHhcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCc--HH--HHHHH
Confidence 4567788888888888888887544 445555556666667888889999999999999998776322 11 45677
Q ss_pred HHHhhcCCChhh--HHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhc--ccCChhhHHHHHHHHhhcc
Q 011744 125 LKDLISDNNPMV--VANAVAALAEIEENSSRPIFEITSHTLSKLLTAL--NECTEWGQVFILDALSRYK 189 (478)
Q Consensus 125 l~~lL~d~~~~V--~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l--~~~~~~~q~~ll~~l~~~~ 189 (478)
+..+..+.|... ..-|..+|+.+--..+. -++...+++.+++.= ...+.|..-..|.+-..|.
T Consensus 490 L~Pi~~std~pie~~~~asltLg~vFvGtcn--gD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~ 556 (881)
T COG5110 490 LQPIMFSTDSPIEVVFFASLTLGSVFVGTCN--GDLTSLILQTFVERGKIESETQWFRFLALGLASLFY 556 (881)
T ss_pred hhhhhcCCCCcHHHHHHHHHhhhheEeeccC--chHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHc
Confidence 777776666533 33333344443222221 233344555665542 2346788766555444443
No 220
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=76.71 E-value=4.1 Score=26.27 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=17.3
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHH
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAIC 104 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~a 104 (478)
.+...|.+.+.|++|.||++|+..
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 455567777888888888877653
No 221
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=76.45 E-value=91 Score=31.53 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=42.9
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhc-CCChhhHHHHHHHHHHHhhh
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLIS-DNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~-d~~~~V~~~a~~~l~~i~~~ 150 (478)
+.++..+..++.+++|.-|...-..+.++|.+.+..... ..+...+.+.+. ...+..+...+..++.+...
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIING 205 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence 345555888888888888888888888888877654331 012233333333 45555666777777776654
No 222
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=75.82 E-value=16 Score=29.28 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=32.3
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC
Q 011744 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI 73 (478)
Q Consensus 29 ~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i 73 (478)
....+..+...+++....++..|.+-++++|+.+.-.||..|-.+
T Consensus 20 ~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~l 64 (115)
T cd00197 20 LIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYC 64 (115)
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 333444444555666677889999999999999998888866544
No 223
>PF05536 Neurochondrin: Neurochondrin
Probab=75.74 E-value=1.1e+02 Score=32.21 Aligned_cols=170 Identities=12% Similarity=0.145 Sum_probs=98.6
Q ss_pred hHHHHHHhccCCCh--hHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCC----CCHHHHHHHHHHhcCCCh-hhhhH--
Q 011744 10 LFTDVVNCMQTENL--ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQD----PNPLIRALAVRTMGCIRV-DKITE-- 80 (478)
Q Consensus 10 ~~~~ii~l~~s~~~--~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~----~n~~vr~~AL~~l~~i~~-~e~~~-- 80 (478)
|..-+.|++.+.+. ..+|..|=+++ +. ..+.|.+--.. +....+.+|+..++.... |+++.
T Consensus 25 gL~lvtk~~~~~~~~~~~~~~v~~aig------~~----Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~ 94 (543)
T PF05536_consen 25 GLLLVTKLLDADDEDSQTRRRVFEAIG------FK----FLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSP 94 (543)
T ss_pred HHHHHHHcCCCchhhHHHHHHHHHhcC------hh----HHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCH
Confidence 45678888877663 44555552222 11 12222222111 445789999998888753 33321
Q ss_pred ---HHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcc---cccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCC
Q 011744 81 ---YLCDPLQRCLKDDDP-YVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (478)
Q Consensus 81 ---~l~~~i~~~l~~~~~-~VRk~A~~al~~i~~~~p---~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~ 153 (478)
.-+|.+.+++.+.+. .+-.-|..|+..+. .+| +.+-..+-++.+.+.+.+ ++.....|+.++..+......
T Consensus 95 ~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~ 172 (543)
T PF05536_consen 95 QMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQ 172 (543)
T ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcch
Confidence 357888888877666 88899999999887 344 222223566777776665 566777788888776554433
Q ss_pred Cccccc----HHHHHHHHHhcccCChhhHHHHHHHHhhccCC
Q 011744 154 PIFEIT----SHTLSKLLTALNECTEWGQVFILDALSRYKAA 191 (478)
Q Consensus 154 ~~~~~~----~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~ 191 (478)
..|.-. ..++..+-+.+..........++++|..+-+.
T Consensus 173 ~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 173 KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 233322 22333333333333445556667777766543
No 224
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=75.72 E-value=80 Score=33.44 Aligned_cols=141 Identities=11% Similarity=0.197 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCC---------
Q 011744 329 RKAVRAIGRCAIKLERAAERCISVLLELIK-IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD--------- 398 (478)
Q Consensus 329 ~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~-~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~--------- 398 (478)
...+.+++.++.......+..++.++++-= ..++.+.......+..++..++.-...++..|++.+....
T Consensus 54 ~~~L~~L~~~Vs~Ld~~~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~ 133 (563)
T PF05327_consen 54 IRWLKALSSCVSLLDSSCKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGC 133 (563)
T ss_dssp HHHHHHHHHGGGGG-SCCHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchh
Confidence 344555555555544444555555544411 1223344445555556665555555555555555442110
Q ss_pred ----hhhHHHHHHHHhhcccCccCC-HHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHH
Q 011744 399 ----EPEAKASMIWIIGEYAERIDN-ADELLESFLESFP--EEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLKYYT 470 (478)
Q Consensus 399 ----~~~~~~~~~~ilGE~~~~~~~-~~~~l~~l~~~~~--~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~~ 470 (478)
...+...+.-++......+|. +..+...+.++|+ ..+..+...-+..+.++..-.|.= ..++++-|++-..
T Consensus 134 ~~~~~~~~~~~vH~~L~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L-~~~Il~lIi~rLi 211 (563)
T PF05327_consen 134 PPEKRREIYERVHDALQKILRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPEL-RSDILSLIIERLI 211 (563)
T ss_dssp -----------HHHHHHHHHHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGG-HHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHH-HHHHHHHHHHHHH
Confidence 011122334444444444544 3344555666665 445566666667777776655542 2244444444433
No 225
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.64 E-value=1.1e+02 Score=31.21 Aligned_cols=281 Identities=12% Similarity=0.138 Sum_probs=130.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCC-----hhhhhH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc--cccccc
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIR-----VDKITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA--ELVEDR 119 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~-----~~e~~~-~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p--~~~~~~ 119 (478)
+.-+.|-+..+.|..|...|+.+-++. -|.|++ .++|.+..++.+..- ...|...++++.-.+. ..+--.
T Consensus 347 veKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayT 424 (791)
T KOG1222|consen 347 VEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYT 424 (791)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHH
Confidence 345566677889999999999888874 244444 578888888876432 2234444444432110 011001
Q ss_pred cHHHHHHH-hhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH-
Q 011744 120 GFLESLKD-LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE- 197 (478)
Q Consensus 120 ~~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~- 197 (478)
+.++.+.+ .+...+..|-...+.....++-.........-.+-+.-|.+.--....-+-++++|-++. .+...-.
T Consensus 425 dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSq---Heg~tqn~ 501 (791)
T KOG1222|consen 425 DCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQ---HEGATQNM 501 (791)
T ss_pred HHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhh---ccchHHHH
Confidence 34444443 344445445444443333343322110010111122333332111122233344444433 3332222
Q ss_pred --HHHHHhhhhhcC-CChHHHHHHHHHHHHhhhhcCChH---HHHHHHHHhhhHHHHhhc---CChhHHHHHHHHHHHHH
Q 011744 198 --NIVERVTPRLQH-ANCAVVLSAVKMILQQMELITSTD---VVRNLCKKMAPPLVTLLS---AEPEIQYVALRNINLIV 268 (478)
Q Consensus 198 --~~l~~l~~~l~~-~~~~V~~ea~~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~ll~---~~~~ir~~aL~~l~~l~ 268 (478)
+.+..+...+++ .+.+...||..++..+. +++-+ .++. .+++|-+-..|. .+.+ ..|+.+..++
T Consensus 502 FidyvgdLa~i~~nd~~E~F~~EClGtlanL~--v~dldw~~ilq~--~~LvPw~k~~L~pga~edd---LvL~~vi~~G 574 (791)
T KOG1222|consen 502 FIDYVGDLAGIAKNDNSESFGLECLGTLANLK--VTDLDWAKILQS--ENLVPWMKTQLQPGADEDD---LVLQIVIACG 574 (791)
T ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHHHhhcc--cCCCCHHHHHhh--ccccHHHHHhhcCCccchh---hhhHHHHHhh
Confidence 334444444544 44578889988888763 22222 2221 145555555553 2333 3333333332
Q ss_pred hhC----------c-cchhhccceeeeccCCChhHHHHHHHHHHHhc-CcccHHHHHHH------HHHhhhhcCHHHHHH
Q 011744 269 QRR----------P-TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLA-SDRNIDQVLLE------FKEYATEVDVDFVRK 330 (478)
Q Consensus 269 ~~~----------~-~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~-~~~n~~~Iv~~------L~~~l~~~d~~~r~~ 330 (478)
... | .++...+..+.....||..+- ..+-+.+.+. .+.+.+-++++ |++.+++.+.++|+-
T Consensus 575 T~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~-QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkV 653 (791)
T KOG1222|consen 575 TMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVV-QIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKV 653 (791)
T ss_pred hhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHH
Confidence 211 1 111122222222234554432 2333333333 33444444443 556667888888877
Q ss_pred HHHHHHHHHhc
Q 011744 331 AVRAIGRCAIK 341 (478)
Q Consensus 331 ~v~~i~~l~~~ 341 (478)
.=.++-.+++.
T Consensus 654 CDn~LdIiae~ 664 (791)
T KOG1222|consen 654 CDNALDIIAEH 664 (791)
T ss_pred HHHHHHHHHHh
Confidence 76777777764
No 226
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=72.72 E-value=2.1e+02 Score=34.06 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcch---HHHHHHHHhhcCCCChhhHHHH
Q 011744 347 ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY---ESIIATLCESLDTLDEPEAKAS 405 (478)
Q Consensus 347 ~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~---~~~i~~L~~~l~~~~~~~~~~~ 405 (478)
+.++..++..+..+.+.-.+.+..++.++...+|+.- ...+..+++++++.+.+++++.
T Consensus 472 qeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~~l~giLD~l~~Ls~~qiR~l 533 (1426)
T PF14631_consen 472 QEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFATFLKGILDYLDNLSLQQIRKL 533 (1426)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHHHHHGGGGGGGG--HHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3455555555545555445677888888888777542 3346677888888877777643
No 227
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=72.42 E-value=6.3 Score=24.51 Aligned_cols=28 Identities=32% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 011744 82 LCDPLQRCLKDDDPYVRKTAAICVAKLY 109 (478)
Q Consensus 82 l~~~i~~~l~~~~~~VRk~A~~al~~i~ 109 (478)
.++.+.+++.++++.+++.|+.++..+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4566777777888888888888887763
No 228
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.68 E-value=1.4e+02 Score=31.42 Aligned_cols=136 Identities=12% Similarity=0.102 Sum_probs=66.9
Q ss_pred HHHHHhhhhhcC-CChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhh-cCChhHHHHHHHHHHHHHhhCc---
Q 011744 198 NIVERVTPRLQH-ANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--- 272 (478)
Q Consensus 198 ~~l~~l~~~l~~-~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~~~--- 272 (478)
+.++.+.+.-++ +.+.-......++..+.. -.+|+..+ ++......+.+-+ +++.++||-+++.+..++..-.
T Consensus 49 r~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~-~~dpeg~~-~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eID 126 (885)
T COG5218 49 RVVNTILACKKNPSIPDRILSFLKRFFEYDM-PDDPEGEE-LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREID 126 (885)
T ss_pred HHHHHhhccccCCCcHHHHHHHHHHHHHhcC-CCChhhhH-HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHH
Confidence 455565555443 344433444445544321 13555432 2233333444444 3678899999988888876422
Q ss_pred c-chhhcccee-eeccCCChhHHHHHHHHHHHhc-CcccHH-HHHHHHHHhhh-hcCHHHHHHHHHHH
Q 011744 273 T-ILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLA-SDRNID-QVLLEFKEYAT-EVDVDFVRKAVRAI 335 (478)
Q Consensus 273 ~-~~~~~~~~~-~~l~~dd~~ir~~al~lL~~l~-~~~n~~-~Iv~~L~~~l~-~~d~~~r~~~v~~i 335 (478)
+ .+...+..+ ..+.+..+.+|+.|+..|...- .+.|-+ .+++.|..-++ |++.++|+.+..-|
T Consensus 127 e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 127 EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 1 222222211 1233445678888887776542 112211 34443333333 45556766655444
No 229
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=71.63 E-value=98 Score=33.53 Aligned_cols=151 Identities=11% Similarity=0.156 Sum_probs=94.7
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHH
Q 011744 312 VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLC 391 (478)
Q Consensus 312 Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~ 391 (478)
.|.+|+.++.+.|.....++-..+...-.. ....|.+..+++.....+..-..+++. .+ +.|- .......|-
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~y~~~t~s~~~~~il~---~~--~~P~-~K~~~~~l~ 76 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNS--DREPWLVNGLVDYYLSTNSQRALEILV---GV--QEPH-DKHLFDKLN 76 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhc--cchHHHHHHHHHHHhhcCcHHHHHHHH---hc--CCcc-HHHHHHHHH
Confidence 456677777788877777776665443322 223499999998877666543333332 22 3341 123455555
Q ss_pred hhcCCCChhhHHHHHHHHhhcccCccCC------HHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHhccCCCcchHHHHHH
Q 011744 392 ESLDTLDEPEAKASMIWIIGEYAERIDN------ADELLESFLESF-PEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQV 464 (478)
Q Consensus 392 ~~l~~~~~~~~~~~~~~ilGE~~~~~~~------~~~~l~~l~~~~-~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~ 464 (478)
+++. .+..+-.++-++|.+...-+. --.++..+++.+ .+.+..+-...|++++-+.-+.|.- +.+-+-.
T Consensus 77 ~~~~---~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~-l~~~L~~ 152 (668)
T PF04388_consen 77 DYFV---KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS-LGPHLPD 152 (668)
T ss_pred HHHc---CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch-hhHHHHH
Confidence 5554 455666777777777654321 114555555554 4667778888888999998888875 7888888
Q ss_pred HHHHHHHHHh
Q 011744 465 TLKYYTCLCF 474 (478)
Q Consensus 465 ~l~~~~~~~~ 474 (478)
+|.++.-+++
T Consensus 153 Lf~If~Rl~~ 162 (668)
T PF04388_consen 153 LFNIFGRLLS 162 (668)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 230
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=71.30 E-value=6 Score=22.61 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCChhhhhHHHHHH
Q 011744 62 IRALAVRTMGCIRVDKITEYLCDP 85 (478)
Q Consensus 62 vr~~AL~~l~~i~~~e~~~~l~~~ 85 (478)
||..|...|+.+++++-++.+...
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~ 24 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEA 24 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 577888888888887777764443
No 231
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=70.94 E-value=11 Score=27.59 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhcc--cccccccHHHHHHHhh-cCCChhhHHHHHHHHHHHhhh
Q 011744 98 RKTAAICVAKLYDINA--ELVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 98 Rk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL-~d~~~~V~~~a~~~l~~i~~~ 150 (478)
+|.|..|++++..... +.+++.++++.+.++. +.+...+|.+|+.+|+-|...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 5788899999876422 3444446778887755 467789999999999888654
No 232
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=70.67 E-value=1.5e+02 Score=31.56 Aligned_cols=273 Identities=19% Similarity=0.198 Sum_probs=146.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCC--ChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i--~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l 125 (478)
..++.|-+=++++++++-||-.++-+ +..+-++...--+...+.+++..+|-.|++.++-.|.-+.. + +....|
T Consensus 417 L~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~--e--~V~~lL 492 (878)
T KOG2005|consen 417 LEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQR--E--EVLELL 492 (878)
T ss_pred HHHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCch--H--HHHHHH
Confidence 45778888889999999999876644 44555666555677777889999999999999988764321 1 334577
Q ss_pred HHhhcCCChh--hHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcc--cCChhhHHHHHHHHhhc-cCCChHHH-HH-
Q 011744 126 KDLISDNNPM--VVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN--ECTEWGQVFILDALSRY-KAADAREA-EN- 198 (478)
Q Consensus 126 ~~lL~d~~~~--V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~--~~~~~~q~~ll~~l~~~-~~~~~~~~-~~- 198 (478)
.+.+.|.++. |..-|..+++-|.-.++. -++...++..++..-. ..++|..-..|-+=..| .+++..+. .+
T Consensus 493 ~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~ 570 (878)
T KOG2005|consen 493 SPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVET 570 (878)
T ss_pred hHHhcCCCCchhHHHHHHhhcceeEEecCC--hHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 8888887766 554444444444332222 2233344455554321 23667765433322222 22221110 00
Q ss_pred ----------HHHHhhh-----------------hhc-----------CCChHHHHHHHHHHHHhhhhcCChHHHHHHHH
Q 011744 199 ----------IVERVTP-----------------RLQ-----------HANCAVVLSAVKMILQQMELITSTDVVRNLCK 240 (478)
Q Consensus 199 ----------~l~~l~~-----------------~l~-----------~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~ 240 (478)
..+.+.. .++ +...+|+==|.-++ ++ +.-.+
T Consensus 571 ~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAM-------ge-eig~e--- 639 (878)
T KOG2005|consen 571 IKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAM-------GE-EIGSE--- 639 (878)
T ss_pred HHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhh-------hh-hhhhH---
Confidence 0011000 000 01112221111111 11 22111
Q ss_pred HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccc--hhhccceeeeccCCChhHHHHHHHHHHHhcCcc-c--HHHHHH
Q 011744 241 KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI--LAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDR-N--IDQVLL 314 (478)
Q Consensus 241 ~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~--~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~-n--~~~Iv~ 314 (478)
-..+.+..++. .+|++|.+.=-+++-++-.+|.. +.. ++-| ..+.|..+...++-.+.-++.-. | +..++.
T Consensus 640 M~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDt-Lsk~--shd~D~eva~naIfamGLiGAGTnNARla~mLr 716 (878)
T KOG2005|consen 640 MVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDT-LSKF--SHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLR 716 (878)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHH-HHHh--ccCcchHHHHHHHHHhccccCCcchHHHHHHHH
Confidence 23445556664 88999998888888888888753 221 1111 12345677666665555554333 3 335666
Q ss_pred HHHHh-hhhcCHHHHHHHHHHHHHHHh
Q 011744 315 EFKEY-ATEVDVDFVRKAVRAIGRCAI 340 (478)
Q Consensus 315 ~L~~~-l~~~d~~~r~~~v~~i~~l~~ 340 (478)
+|-.| -++++.-|...+.+.+..++.
T Consensus 717 qlaSYyyKd~~~Lf~vriAQGL~hlGK 743 (878)
T KOG2005|consen 717 QLASYYYKDSKALFVVRIAQGLVHLGK 743 (878)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhcC
Confidence 66644 466666666666666665554
No 233
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=70.50 E-value=7.4 Score=24.19 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=25.2
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHHHHh
Q 011744 120 GFLESLKDLISDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 120 ~~~~~l~~lL~d~~~~V~~~a~~~l~~i~ 148 (478)
+.++.+.+++.+.++.++..|+.++..+.
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 56788999999999999999999998764
No 234
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=69.55 E-value=93 Score=28.65 Aligned_cols=133 Identities=16% Similarity=0.069 Sum_probs=81.2
Q ss_pred hccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCh--hhhhHHHHHHHHh------
Q 011744 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITEYLCDPLQR------ 88 (478)
Q Consensus 17 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~--~e~~~~l~~~i~~------ 88 (478)
+-..++++...-..-++..++.++....-+++.++..-.+.+....+..+++.++.+.. +...+.+-+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~ 88 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIP 88 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 44445555555555555555544425566677777766666666667778887776642 2122222222222
Q ss_pred -hcCC--CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhh-cCCChhhHHHHHHHHHHHhhhC
Q 011744 89 -CLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 89 -~l~~--~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL-~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
...+ ....+.-..+.++.-+....|+.-. ++++.+..+| .+.++.++..++.++..+++..
T Consensus 89 ~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~--~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 89 SSFSSKDEFWECLISIAASIRDICCSRPDHGV--DLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHhChhhHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 1222 2233334445566667778888433 6889999999 7888888999999999998654
No 235
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=68.81 E-value=1.8e+02 Score=31.57 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHhcCCCh---------hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHh
Q 011744 58 PNPLIRALAVRTMGCIRV---------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL 128 (478)
Q Consensus 58 ~n~~vr~~AL~~l~~i~~---------~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~l 128 (478)
+|+.-..-|||.++++.+ ..|-..+.+.|...++++.-+.|..|+..+.++-.-.++-..-....+...++
T Consensus 428 dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~nc 507 (970)
T COG5656 428 DNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNC 507 (970)
T ss_pred ccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 567777889999998764 12333467778888899999999999999988844333322212456777788
Q ss_pred hcCCChhhHHHHHHHHHHHhhhC
Q 011744 129 ISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 129 L~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
+++.+..|+..|+.|+.-+..+.
T Consensus 508 l~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 508 LKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HhcCCcchhhhHHHHHHHHHhch
Confidence 99999999998888887655443
No 236
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=68.38 E-value=1.8e+02 Score=31.55 Aligned_cols=123 Identities=18% Similarity=0.135 Sum_probs=84.0
Q ss_pred CCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC--ChhhhhHHHHHHHHhhcCCCChHH
Q 011744 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYV 97 (478)
Q Consensus 20 s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i--~~~e~~~~l~~~i~~~l~~~~~~V 97 (478)
+++...|++..-|+..+++. +..-.|..|-.-..++=+.++.-||+++..+ .-||--..++..+.+.+.|++.-+
T Consensus 281 ~~~~~~k~Ll~WyfE~~LK~---ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKi 357 (988)
T KOG2038|consen 281 NKRLRDKILLMWYFEHELKI---LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKI 357 (988)
T ss_pred ccccccceehHHHHHHHHHH---HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhh
Confidence 45555555555555544433 2333455555555567788999999998876 346666778888999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhH--HHHHHHHHHH
Q 011744 98 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVV--ANAVAALAEI 147 (478)
Q Consensus 98 Rk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~--~~a~~~l~~i 147 (478)
-.+|..-+..+.+.+|..-. ..++.+.+++--++.+-+ +-|+..|.++
T Consensus 358 askAsylL~~L~~~HPnMK~--Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~ 407 (988)
T KOG2038|consen 358 ASKASYLLEGLLAKHPNMKI--VVIDEIERLAFRPNVSERAHYYAVIFLNQM 407 (988)
T ss_pred hhhHHHHHHHHHhhCCccee--ehHHHHHHHHcccCccccceeehhhhhhhh
Confidence 99999999999999997533 356777777766665443 3445555554
No 237
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=68.28 E-value=20 Score=30.74 Aligned_cols=96 Identities=20% Similarity=0.200 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCC---CcccccHHHHHHHHH
Q 011744 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR---PIFEITSHTLSKLLT 168 (478)
Q Consensus 92 ~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~---~~~~~~~~~~~~Ll~ 168 (478)
...+.+|..|..++.++....++...+ .+.+.+..++.+.+..-...++.++..+-+-.++ ..+ ...+....++.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~-~~eg~~~~l~~ 93 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF-LSEGFLESLLP 93 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC-CTTTHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH-hhhhHHHHHHH
Confidence 577889999999999998777765553 4556666777654444555556666555433211 000 01122233333
Q ss_pred hcc--cCChhhHHHHHHHHhhcc
Q 011744 169 ALN--ECTEWGQVFILDALSRYK 189 (478)
Q Consensus 169 ~l~--~~~~~~q~~ll~~l~~~~ 189 (478)
... ..++-.|..+++++..-+
T Consensus 94 ~~~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 94 LASRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp HHH-CTS-HHHHHHHHHHHHHHT
T ss_pred HHhcccCCHHHHHHHHHHHHHHH
Confidence 332 345556666777776544
No 238
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=67.50 E-value=75 Score=26.80 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=40.1
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHH-HhhcCChhHHHHHHHHHHHHHhhCccchh
Q 011744 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLV-TLLSAEPEIQYVALRNINLIVQRRPTILA 276 (478)
Q Consensus 205 ~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~~~~ir~~aL~~l~~l~~~~~~~~~ 276 (478)
+.+...|++..++.+-.+.. ++..- +.++..|. ++.++++++.+.||..+..++++-+..|.
T Consensus 11 e~l~~~dw~~il~icD~I~~------~~~~~----k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh 73 (144)
T cd03568 11 EKLTSENWGLILDVCDKVKS------DENGA----KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFH 73 (144)
T ss_pred ccCCCcCHHHHHHHHHHHhc------CCccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 34566788888887776654 11211 23344444 44468999999999999999887544443
No 239
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=67.38 E-value=1.5e+02 Score=30.30 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=43.0
Q ss_pred hcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-C-----ChhHHHHHHHHHHHHHhhCcc
Q 011744 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-A-----EPEIQYVALRNINLIVQRRPT 273 (478)
Q Consensus 207 l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~-----~~~ir~~aL~~l~~l~~~~~~ 273 (478)
....++.+..||.+++++.. +.+|..-+.+.+ .....++..++ . ++++.|..++.+--++...++
T Consensus 41 ~~~~~~~v~~EALKCL~N~l--f~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~ 112 (446)
T PF10165_consen 41 FESPDPDVSREALKCLCNAL--FLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPD 112 (446)
T ss_pred ccCCChHHHHHHHHHHHHHH--hCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChh
Confidence 44567899999999998874 345554443332 34445666664 2 578999999988777765543
No 240
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=65.63 E-value=29 Score=26.30 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcC-CCChHHHHHHHHHHHHHHhhcccccccccHHHHH---HHhhcCCChhhHHHHHHHH
Q 011744 80 EYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESL---KDLISDNNPMVVANAVAAL 144 (478)
Q Consensus 80 ~~l~~~i~~~l~-~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l---~~lL~d~~~~V~~~a~~~l 144 (478)
..++.+...++. .++..||...+.|+.++.....+.+.. +|...+ .....|.+..++..|...+
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~S-GW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKS-GWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 345555666654 478899999999999999887777764 885544 3445677777777776654
No 241
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=64.45 E-value=31 Score=26.56 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=41.6
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcC--CChhhHHHHHHHHHHHhh
Q 011744 91 KDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISD--NNPMVVANAVAALAEIEE 149 (478)
Q Consensus 91 ~~~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d--~~~~V~~~a~~~l~~i~~ 149 (478)
.+++..+|..|+..+..+.+.+.+..+. +.+...+.+.+.| ++......|+..|..+..
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3467799999999999999876543321 1445555555554 446678999999988854
No 242
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=64.43 E-value=1.4e+02 Score=28.70 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=44.9
Q ss_pred ChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHH
Q 011744 289 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEA 368 (478)
Q Consensus 289 d~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~ 368 (478)
|+.+|..++.....-++++.++.+... |..+.+++.|..++.+++.... .+.+.-+++.+.+++..-.+++
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~---~~~~~~~~~k~~~l~aLa~~~d------~~~~~~~l~~~l~~~~v~~~d~ 238 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWEL---YKNSTSPEEKRRLLSALACSPD------PELLKRLLDLLLSNDKVRSQDI 238 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHH---HHTTSTHHHHHHHHHHHTT-S-------HHHHHHHHHHHHCTSTS-TTTH
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHH---HhccCCHHHHHHHHHhhhccCC------HHHHHHHHHHHcCCcccccHHH
Confidence 567777766666655555444444443 3345567777777777754322 2344444444444221222334
Q ss_pred HHHHHHHHhhCCcchHHHHHHHHh
Q 011744 369 IIVIKDIFRRYPNTYESIIATLCE 392 (478)
Q Consensus 369 ~~~l~~i~~~~~~~~~~~i~~L~~ 392 (478)
...+..+...+|..+..+.+.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 239 RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCChhhHHHHHHHHHH
Confidence 444444443555554444444433
No 243
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=63.68 E-value=1.7e+02 Score=29.40 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=44.9
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHhhccccccc---ccHHHHHHHhhcC-CChhhHHHHHHHHHHHhhhC
Q 011744 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED---RGFLESLKDLISD-NNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 84 ~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~---~~~~~~l~~lL~d-~~~~V~~~a~~~l~~i~~~~ 151 (478)
+...+++.+.++++-..+...+.++....+..+.. .-+...+...++. .++.-+..|+.+|..+...+
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~ 188 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD 188 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc
Confidence 44566777888888777888888887776655442 1234666666665 55566667777777766554
No 244
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=63.64 E-value=44 Score=35.33 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHH
Q 011744 60 PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVAN 139 (478)
Q Consensus 60 ~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~ 139 (478)
+-+-+.|+-+++.=.+. +.....+-..+.-.+|.+||..=+|+.-++-.+|+. ...+.|.+...|.|+.|..+
T Consensus 622 ~avLgiAliAMgeeig~---eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~----~vlDtLsk~shd~D~eva~n 694 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGS---EMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV----NVLDTLSKFSHDGDLEVAMN 694 (878)
T ss_pred chhhhhhhhhhhhhhhh---HHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc----hHHHHHHHhccCcchHHHHH
Confidence 34555566555542222 234455666677799999999999999888888875 47799999999999999999
Q ss_pred HHHHHHHHhh
Q 011744 140 AVAALAEIEE 149 (478)
Q Consensus 140 a~~~l~~i~~ 149 (478)
|+.+++-+..
T Consensus 695 aIfamGLiGA 704 (878)
T KOG2005|consen 695 AIFAMGLIGA 704 (878)
T ss_pred HHHHhccccC
Confidence 9999987754
No 245
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=63.63 E-value=32 Score=27.12 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcchhhHHHH-----HHHHHHH--hcccchhHHHHHHHHHHHHHhhCCcchHH
Q 011744 327 FVRKAVRAIGRCAIKLERAAERC-----ISVLLEL--IKIKVNYVVQEAIIVIKDIFRRYPNTYES 385 (478)
Q Consensus 327 ~r~~~v~~i~~l~~~~~~~~~~~-----i~~ll~l--l~~~~~~v~~~~~~~l~~i~~~~~~~~~~ 385 (478)
+|+.+++.|+.++-+.+...+.+ +..+++. +.+.++++++-++..++.+...+++-++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~ 67 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEF 67 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666665443222211 3444444 33456788888889999998888876543
No 246
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.24 E-value=2.4e+02 Score=30.82 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=43.0
Q ss_pred hHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh-hcccccccccHHHHHHHhhcCC-ChhhHHHHHHHHHHHhhh
Q 011744 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD-INAELVEDRGFLESLKDLISDN-NPMVVANAVAALAEIEEN 150 (478)
Q Consensus 79 ~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~lL~d~-~~~V~~~a~~~l~~i~~~ 150 (478)
.+.+.|.+.. -.+....+||+.++-+++-.. +.++.... -.-..+.+++.|. |..|+.+++.++.-+.++
T Consensus 486 ~~~llpEl~~-~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~-l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD 557 (978)
T KOG1993|consen 486 QEALLPELAN-DHGNSRIIRRRVAWILGQWVSVQQKLELKP-LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDD 557 (978)
T ss_pred HHhhCHHhhh-cccchhHHHHHHHHHHhhhhheechHhHHH-HHHHHHHHhcCccccceeehHHHHHHHHhhhh
Confidence 3445555551 123556788999988887543 23322221 3345666778887 677788888888776543
No 247
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.58 E-value=2.7e+02 Score=31.13 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHhcCCC---hhhhhHHHHHH---HHhhcCCCChHHHHHHHHHHHHHHhh
Q 011744 59 NPLIRALAVRTMGCIR---VDKITEYLCDP---LQRCLKDDDPYVRKTAAICVAKLYDI 111 (478)
Q Consensus 59 n~~vr~~AL~~l~~i~---~~e~~~~l~~~---i~~~l~~~~~~VRk~A~~al~~i~~~ 111 (478)
|..-.|.++..++.+. ..++.+.++.. +...+.+++++|+..|..|+..|...
T Consensus 561 nv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a 619 (1014)
T KOG4524|consen 561 NEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADA 619 (1014)
T ss_pred chhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 4555567777776653 44555544333 34445689999999999999999874
No 248
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=61.30 E-value=99 Score=35.43 Aligned_cols=65 Identities=20% Similarity=0.260 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc-cccccccHHHHHHHhhcCCChhhHHHHHHHHHH
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p-~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~ 146 (478)
-...|.+..+..+.++++|-+|+.|+.-+++... +..- ..++.+..++.|.+..++..+...+..
T Consensus 815 ~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~--~v~~~~~~ll~~~~~~~~r~~a~e~~~ 880 (1549)
T KOG0392|consen 815 GSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMA--TVINGFLPLLGDLDKFVRRQGADELIE 880 (1549)
T ss_pred hhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhccchhhHhhhhhHHHHHH
Confidence 3567888999999999999999999999888543 2221 456777778888888887655544433
No 249
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.91 E-value=87 Score=35.31 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=88.6
Q ss_pred hhhHHHHHHHHhhc-----CCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 77 KITEYLCDPLQRCL-----KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 77 e~~~~l~~~i~~~l-----~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
+-++.++..+.+.. +|-.|.+|--.+..++--.+.+|+.+-+..+...+-=.|+|.+..||..++.+|..+..++
T Consensus 278 d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~ 357 (1048)
T KOG2011|consen 278 DEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKD 357 (1048)
T ss_pred HHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhcc
Confidence 33444555555444 4689999999999999999999998766566677777899999999999999999988774
Q ss_pred CC-CcccccHHHHH-HHHHhc-ccCChhhHHHHHHHH-hhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHH
Q 011744 152 SR-PIFEITSHTLS-KLLTAL-NECTEWGQVFILDAL-SRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (478)
Q Consensus 152 ~~-~~~~~~~~~~~-~Ll~~l-~~~~~~~q~~ll~~l-~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 224 (478)
.. ....++...|. +++.+. .+.++-....-+..+ ....+.- ....=+..+..++.+.++.|+.+|...+..
T Consensus 358 ~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~--L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 358 EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGL--LSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccc--cChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 21 22333333333 344432 223333322212211 1111100 001224556667777777777777665544
No 250
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=60.72 E-value=3.2e+02 Score=31.70 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=51.0
Q ss_pred HHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhcC-ChhHH-HHHHHHHHHHHhhCccchh
Q 011744 199 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQ-YVALRNINLIVQRRPTILA 276 (478)
Q Consensus 199 ~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~ir-~~aL~~l~~l~~~~~~~~~ 276 (478)
.++.+...+.+...++++.|++++..... .+. ...+..+.+.+..++.. +.-.| -.+-..+..+...-...+.
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k-~~~----~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~ 891 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFK-SAT----RETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLV 891 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccc
Confidence 45556667788899999999999998754 122 22223344544555652 33333 3333444444432222222
Q ss_pred hccc-----eeeeccCCChhHHHHHHHHHHH
Q 011744 277 HEIK-----VFFCKYNDPIYVKMEKLEIMIK 302 (478)
Q Consensus 277 ~~~~-----~~~~l~~dd~~ir~~al~lL~~ 302 (478)
++.. .+-+..++..++|..|-+....
T Consensus 892 ~~~~Llv~pllr~msd~~d~vR~aat~~fa~ 922 (1549)
T KOG0392|consen 892 PYNPLLVVPLLRRMSDQIDSVREAATKVFAK 922 (1549)
T ss_pred ccceeehhhhhcccccchHHHHHHHHHHHHH
Confidence 3321 2223333335666666555433
No 251
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=60.63 E-value=38 Score=27.47 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcC-CCCHHHHHHHHHHhcCCC-----hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhc
Q 011744 45 ILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR-----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN 112 (478)
Q Consensus 45 ~l~in~l~kdL~-~~n~~vr~~AL~~l~~i~-----~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~ 112 (478)
.-+.+++.+.++ +..+..|..|...++.+. +++.++.+...+.+.....+. .+.|..|+..+++..
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 334566777777 667777777777666654 346666666666666555544 788999999998754
No 252
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=60.32 E-value=26 Score=31.69 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=47.9
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
+.+++......++.++-.|+.|+.+...-.+..+... .+.+.+..++.|.++.|+.+.-.+|.++..+.
T Consensus 117 ~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~~~~---~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~ 185 (222)
T COG4912 117 PDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTLDLL---EIFEIIELLLGDKEFFVQKAIGWALRQIGKHS 185 (222)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHhcCccchh---HHHHHHHHHccChHHHHHHHHHHHHHHHHhhc
Confidence 3444445555556677778877777665444444433 37788888888888888888888888888854
No 253
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=60.24 E-value=2.2e+02 Score=29.71 Aligned_cols=81 Identities=9% Similarity=0.163 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHHHHhcCcc---cHHHHHHHHHHhhhhcC-HHHHHHHHHH
Q 011744 259 VALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDR---NIDQVLLEFKEYATEVD-VDFVRKAVRA 334 (478)
Q Consensus 259 ~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~---n~~~Iv~~L~~~l~~~d-~~~r~~~v~~ 334 (478)
--|+.++......|+.+.||.+.|..+........+.++.+++.|..+. ..+.-++.|...+.+++ .+++-.++..
T Consensus 181 ~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ 260 (851)
T KOG3723|consen 181 MLLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKE 260 (851)
T ss_pred HHHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 3466677777778999999998764332222224456888888877543 34556777777776654 4566666665
Q ss_pred HHHHH
Q 011744 335 IGRCA 339 (478)
Q Consensus 335 i~~l~ 339 (478)
|+...
T Consensus 261 ia~~~ 265 (851)
T KOG3723|consen 261 IAVYE 265 (851)
T ss_pred HHhcC
Confidence 55443
No 254
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=59.72 E-value=92 Score=25.14 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHhhcccccccccHHHHH-HHhhcCCChhh-HHHHHHHHHHHhhhCCC
Q 011744 77 KITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESL-KDLISDNNPMV-VANAVAALAEIEENSSR 153 (478)
Q Consensus 77 e~~~~l~~~i~~~l~-~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l-~~lL~d~~~~V-~~~a~~~l~~i~~~~~~ 153 (478)
++++.+.|.+.+++. +..+..|-.|.+.+..+..+.| +.+ +.++.+ ...+.+.++.- ...++.++..+.+...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~-~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q~- 77 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSD-EVLNALMESILKNWTQETVQRQALICLIVLCQSQE- 77 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcH-HHHHHHHHHHHhccccchhHHHHHHHHHHHHHccc-
Confidence 467889999999999 7899999999999999887654 111 233333 33444444433 3778888888886541
Q ss_pred CcccccHHHHHHHHH
Q 011744 154 PIFEITSHTLSKLLT 168 (478)
Q Consensus 154 ~~~~~~~~~~~~Ll~ 168 (478)
+.-.+-.+.++.+.+
T Consensus 78 ~~~~lp~~~~~~l~~ 92 (121)
T PF12397_consen 78 NVDSLPRKVFKALLK 92 (121)
T ss_pred ccccCCHHHHHHHHc
Confidence 122333455555554
No 255
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.23 E-value=64 Score=31.95 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=53.4
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC
Q 011744 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (478)
Q Consensus 84 ~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 152 (478)
.++..-+.|.+..||+.|...+......+|+.+.. ....+.+..+..|.+..||.....++-.+....+
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~ 131 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC 131 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc
Confidence 34566678999999999999999999888876542 2345677778889999999988888877555443
No 256
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.22 E-value=86 Score=34.37 Aligned_cols=144 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHhcccc-----hhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCC
Q 011744 325 VDFVRKAVRAIGRCAIKL-ERAAERCISVLLELIKIKV-----NYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 398 (478)
Q Consensus 325 ~~~r~~~v~~i~~l~~~~-~~~~~~~i~~ll~ll~~~~-----~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~ 398 (478)
..+|+++-...-.+=+-+ +.-.+.+++++-+.+..++ ....+..+..+..+.....+.....+.++++..-.+.
T Consensus 438 ~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik 517 (982)
T KOG2022|consen 438 ESYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIK 517 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccc
Q ss_pred ----hhhHHHHHHHHhhcccCccCCHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Q 011744 399 ----EPEAKASMIWIIGEYAERIDNADELLESFLESF--PEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLKYY 469 (478)
Q Consensus 399 ----~~~~~~~~~~ilGE~~~~~~~~~~~l~~l~~~~--~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~ 469 (478)
.|+..+++...+|-+++...+-|-.+...+..+ ..+.++.-.+.+.++-|++..+|.+ +.+..+++...|
T Consensus 518 ~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~-L~py~d~~~a~~ 593 (982)
T KOG2022|consen 518 LSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPES-LDPYADQFSAVC 593 (982)
T ss_pred cccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhh-CchHHHHHHHHH
No 257
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=58.75 E-value=1e+02 Score=30.45 Aligned_cols=92 Identities=13% Similarity=0.133 Sum_probs=61.0
Q ss_pred HHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----Chh---hh-hHHHHHHH
Q 011744 15 VNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD---KI-TEYLCDPL 86 (478)
Q Consensus 15 i~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~---e~-~~~l~~~i 86 (478)
.+...-.+-..+-=+-|..+-....+|+...-++.+|+|.+++.||.|.-.||..+..+ +.+ |+ -..+...+
T Consensus 14 ~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 14 EKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred HHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 33433444444444445566667788899999999999999999999999999976643 211 22 12455567
Q ss_pred HhhcC-CCChHHHHHHHHHHH
Q 011744 87 QRCLK-DDDPYVRKTAAICVA 106 (478)
Q Consensus 87 ~~~l~-~~~~~VRk~A~~al~ 106 (478)
.+++. ...+.|+++-...+.
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~ 114 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVK 114 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHH
Confidence 77777 467777766554443
No 258
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=57.96 E-value=2e+02 Score=28.56 Aligned_cols=180 Identities=12% Similarity=0.170 Sum_probs=94.0
Q ss_pred CChhHHHHHHHHHHHHHhhCccchhhccc----ee-eeccCCChhHHHHHHHHHHHhcC----cccHHHHHHHHHHhhhh
Q 011744 252 AEPEIQYVALRNINLIVQRRPTILAHEIK----VF-FCKYNDPIYVKMEKLEIMIKLAS----DRNIDQVLLEFKEYATE 322 (478)
Q Consensus 252 ~~~~ir~~aL~~l~~l~~~~~~~~~~~~~----~~-~~l~~dd~~ir~~al~lL~~l~~----~~n~~~Iv~~L~~~l~~ 322 (478)
+..++-+..+..+.++...+|+.+..|.. .+ ..+.+....+|.+|+.++..+.- +..+...+.+..+.-.
T Consensus 146 ~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~- 224 (372)
T PF12231_consen 146 PSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSL- 224 (372)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcccc-
Confidence 35678889999999999999988776643 22 22334456788888777755431 1111111111110000
Q ss_pred cCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHhhC-CcchH---HHHHHHHhhcCCC
Q 011744 323 VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV-NYVVQEAIIVIKDIFRRY-PNTYE---SIIATLCESLDTL 397 (478)
Q Consensus 323 ~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~-~~v~~~~~~~l~~i~~~~-~~~~~---~~i~~L~~~l~~~ 397 (478)
.+ .+..+++.+.+..++...+ ......+|..+..++... -+.-+ .-+...-.++..
T Consensus 225 ----------------~~--~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~- 285 (372)
T PF12231_consen 225 ----------------EN--GKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNS- 285 (372)
T ss_pred ----------------cc--ccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcC-
Confidence 00 0234567777777777733 345678998888887432 11111 111111223333
Q ss_pred ChhhHHHHH--HHHhhcccCccC--CHHHHHHHHh----hcCC-----CCCHHHHHHHHHHHHHHhc
Q 011744 398 DEPEAKASM--IWIIGEYAERID--NADELLESFL----ESFP-----EEPAQVQLQLLTATVKLFL 451 (478)
Q Consensus 398 ~~~~~~~~~--~~ilGE~~~~~~--~~~~~l~~l~----~~~~-----~~~~~vk~~il~a~~Kl~~ 451 (478)
++|.++..+ +|=.=-|.-... ..+..++.+. ..+. ....+++..+++.+..+..
T Consensus 286 ~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 286 SDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 467775443 454433322111 1334444332 2222 1223888888888888765
No 259
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=56.66 E-value=1.8e+02 Score=29.86 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=82.0
Q ss_pred CCCChHHHHHHHHHHHHHHhhccc---------ccccc--cHHHHHHH-hhcCCChhhHHHHHHHHHHHhhhCCCCcccc
Q 011744 91 KDDDPYVRKTAAICVAKLYDINAE---------LVEDR--GFLESLKD-LISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (478)
Q Consensus 91 ~~~~~~VRk~A~~al~~i~~~~p~---------~~~~~--~~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~ 158 (478)
+|....||..|..++....+.-|. .+++. +=.|.+.. -|+|+++.++..|+..+..+...+
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs------- 78 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS------- 78 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-------
Confidence 455677899998888776554221 12210 11233333 378999999999998888876543
Q ss_pred cHHHHHHHHHhc---c--cCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhh-cCCChHHHHHHHHHHHHhhhhcCCh
Q 011744 159 TSHTLSKLLTAL---N--ECTEWGQVFILDALSRYKAADAREAENIVERVTPRL-QHANCAVVLSAVKMILQQMELITST 232 (478)
Q Consensus 159 ~~~~~~~Ll~~l---~--~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~~~~~~~~~ 232 (478)
+.++..- . ...||.....-.++.. ...++..+ ....+-++-.+++++..+....+-.
T Consensus 79 -----k~fls~a~~~~~~~ftpf~v~~a~si~~~------------~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~ 141 (728)
T KOG4535|consen 79 -----KQFLSVAEDTSDHAFTPFSVMIACSIREL------------HRCLLLALVAESSSQTVTQIIKCLANLVSNAPYD 141 (728)
T ss_pred -----HHHHHHHhccCCcCCCchHHHHHHHHHHH------------HHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchH
Confidence 1222211 1 1245554332222211 11111111 2334455566777666554321111
Q ss_pred HHHHHHHHHhhhHHHHhh-cCChhHHHHHHHHHHHHHhh
Q 011744 233 DVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQR 270 (478)
Q Consensus 233 ~~~~~~~~~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~ 270 (478)
.+--.+..++.+.+-.+. ++|++++..+|-.+..++..
T Consensus 142 ~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 142 RLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 111112234445544555 48999999999999988754
No 260
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=56.37 E-value=1.1e+02 Score=26.23 Aligned_cols=49 Identities=12% Similarity=0.287 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHH-hhcCCChhhHHHHHHHHHHHhhhC
Q 011744 100 TAAICVAKLYDINAELVEDRGFLESLKD-LISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 100 ~A~~al~~i~~~~p~~~~~~~~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
-+..-+.++++.++.... +.++.+.+ ++...+..+ ..=+.+|..+....
T Consensus 37 LG~~IL~~~fk~h~~~r~--~Ile~l~~rI~~~s~~~~-~~~idlL~~lv~~~ 86 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRS--EILEQLLNRIVTKSSSPS-SQYIDLLSELVRKA 86 (158)
T ss_dssp HHHHHHHHHHHH-GGGHH--HHHHHHHHHHHH--SS---HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhHHHHH--HHHHHHHHHHHhcCccch-hHHHHHHHHHHHHC
Confidence 566667777777776554 34555544 333333212 23356677776654
No 261
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.25 E-value=3.1e+02 Score=30.09 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=43.6
Q ss_pred HHHHHhhhhhcCC-ChHHHHHHHHHHHHhhhhcC-ChHHHHHHHHHhhhHHHHhhc--CChhHHHHHHHHHHHHHhhC
Q 011744 198 NIVERVTPRLQHA-NCAVVLSAVKMILQQMELIT-STDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRR 271 (478)
Q Consensus 198 ~~l~~l~~~l~~~-~~~V~~ea~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~ll~--~~~~ir~~aL~~l~~l~~~~ 271 (478)
.+...+..++++. +-.|+.++++++....+..+ +++.+..+..++--.+..++. .+-+.|..+|..++.+..+-
T Consensus 526 l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~ 603 (978)
T KOG1993|consen 526 LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERV 603 (978)
T ss_pred HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4566677778876 66889999998876543211 233333332333333344453 45667777777777776653
No 262
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=55.75 E-value=27 Score=33.46 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=41.6
Q ss_pred HHHHHhhhhhcCCChH-HHHHHHHHHHHhhhhcCChHHHHHHHHHhh-hHHHHhhc-CChhHHHHHHHHHHHHHh
Q 011744 198 NIVERVTPRLQHANCA-VVLSAVKMILQQMELITSTDVVRNLCKKMA-PPLVTLLS-AEPEIQYVALRNINLIVQ 269 (478)
Q Consensus 198 ~~l~~l~~~l~~~~~~-V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~-~~l~~ll~-~~~~ir~~aL~~l~~l~~ 269 (478)
.++..+...+++.++. ..--|+.=+.++.. ..|+....+.+--+ ..+..|++ +|+++||.||+++..+..
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr--~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVR--ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHH--hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 4667777777766553 22223333333332 24555444444223 34567886 789999999999888764
No 263
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=55.63 E-value=36 Score=28.25 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=39.8
Q ss_pred hHHHHHHHHhhcCCCC----hHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhhHHHHHHHH
Q 011744 79 TEYLCDPLQRCLKDDD----PYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (478)
Q Consensus 79 ~~~l~~~i~~~l~~~~----~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l 144 (478)
.+.++..+.+.+.... +.+.+++..|+.+.... .++.+.+.++++.+.+++.+++ .+.+|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 3444444555554422 78889999999887763 3344444468888888885443 466666543
No 264
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=55.60 E-value=1.8e+02 Score=27.16 Aligned_cols=146 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHhhhhcCHHHHHH--------HHHHHHHHHhcchhhHHHHHHHHHHHhccc--------chhHHHHHHHH
Q 011744 308 NIDQVLLEFKEYATEVDVDFVRK--------AVRAIGRCAIKLERAAERCISVLLELIKIK--------VNYVVQEAIIV 371 (478)
Q Consensus 308 n~~~Iv~~L~~~l~~~d~~~r~~--------~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~--------~~~v~~~~~~~ 371 (478)
+.+.++|+|+..+.+.-...... .+.++.-+++ -..+..++.++++++.. |+.+.++....
T Consensus 28 ~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq---~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~i 104 (249)
T PF06685_consen 28 QREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQ---FREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRI 104 (249)
T ss_pred CHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHH---HhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHH
Q ss_pred HHHHHhhCCcchHHHHHHHHhhcCCCChhhH-HHHHHHHhhcccCccCC----HHHHHHHHhhc-CCCCCHHHHHHHHHH
Q 011744 372 IKDIFRRYPNTYESIIATLCESLDTLDEPEA-KASMIWIIGEYAERIDN----ADELLESFLES-FPEEPAQVQLQLLTA 445 (478)
Q Consensus 372 l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~-~~~~~~ilGE~~~~~~~----~~~~l~~l~~~-~~~~~~~vk~~il~a 445 (478)
+-.+..++++ .|.+++++-...+. |.+++-.++.-...-+. ....++.+.+. +....+.+-..++..
T Consensus 105 lasv~~G~~~-------~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~ 177 (249)
T PF06685_consen 105 LASVGDGDIE-------PLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVAD 177 (249)
T ss_pred HHHHhCCCHH-------HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHH
Q ss_pred HHHHhccCCCcchHHHHHHHHH
Q 011744 446 TVKLFLKKPTEGPQQMIQVTLK 467 (478)
Q Consensus 446 ~~Kl~~~~~~~~~~~~~~~~l~ 467 (478)
++-+ +|.| +-+-+.++|+
T Consensus 178 ~~dL---~~~E-L~~~I~~~f~ 195 (249)
T PF06685_consen 178 ICDL---YPEE-LLPEIRKAFE 195 (249)
T ss_pred HHhc---CHHH-hHHHHHHHHH
No 265
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=54.73 E-value=2.2e+02 Score=27.92 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=89.0
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc--------c-cc-ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhh
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL--------V-ED-RGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~--------~-~~-~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 150 (478)
.+.+.+...+..-+-..||.++.....+.+..++. + .. ++++..+...-. +|.+...+-..+.+..+.
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhh
Confidence 45566777777788889999998888887764332 1 11 122333333333 444555555555555443
Q ss_pred CCCCcccccHHHHHHHHHhcccCChhhH-HHHHHHHhhccCCChH--------HHHHHHHHhhhhhcCCChHHHHHHHHH
Q 011744 151 SSRPIFEITSHTLSKLLTALNECTEWGQ-VFILDALSRYKAADAR--------EAENIVERVTPRLQHANCAVVLSAVKM 221 (478)
Q Consensus 151 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~q-~~ll~~l~~~~~~~~~--------~~~~~l~~l~~~l~~~~~~V~~ea~~~ 221 (478)
..-...-+..+.+.++.+-+. ...|.- .-.+..++.+-..... ....+......++.+.|...+..++++
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~-~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQ-LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTT-SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhc-CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 210000000011111111111 111111 1122223221111111 122455566678899999999999999
Q ss_pred HHHhhhhcCChHHHH---HHHH--HhhhHHHHhhc-CChhHHHHHHHHHHHHHhh
Q 011744 222 ILQQMELITSTDVVR---NLCK--KMAPPLVTLLS-AEPEIQYVALRNINLIVQR 270 (478)
Q Consensus 222 i~~~~~~~~~~~~~~---~~~~--~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~ 270 (478)
++.+. .+++-.. .++. .-...+..+|. +..++|+.|...+.-++.+
T Consensus 233 L~ell---ldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 233 LGELL---LDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHH---HSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHH---HchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99874 2222221 1111 11223456675 6789999999999888874
No 266
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.51 E-value=71 Score=33.05 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHhcCCC-hhhh-hHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhh
Q 011744 59 NPLIRALAVRTMGCIR-VDKI-TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (478)
Q Consensus 59 n~~vr~~AL~~l~~i~-~~e~-~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V 136 (478)
+..+...|+-..+-|. ..++ .+.+...+-..+.-.++.+|+.--+|++-++-.+|+. ...+.+.+...|.|..|
T Consensus 617 ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm----~vfDtL~r~shd~dl~v 692 (881)
T COG5110 617 EALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM----NVFDTLERSSHDGDLNV 692 (881)
T ss_pred HHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch----HHHHHHHHhccccchhH
Confidence 3455555555444432 1222 2233333444444489999999999998877778875 46799999999999999
Q ss_pred HHHHHHHHHHHhh
Q 011744 137 VANAVAALAEIEE 149 (478)
Q Consensus 137 ~~~a~~~l~~i~~ 149 (478)
..+++.+++-+..
T Consensus 693 ~~ntIfamGLiGA 705 (881)
T COG5110 693 IINTIFAMGLIGA 705 (881)
T ss_pred HHHHHHHhhcccc
Confidence 9999999987644
No 267
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=53.91 E-value=29 Score=29.16 Aligned_cols=48 Identities=31% Similarity=0.491 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCC
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~ 132 (478)
+.+...+..++.++++.|+|.|..|+... ++|... .+.+.|..+++|.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l~---pY~d~L~~Lldd~ 63 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTW--KDPYLT---PYKDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHHH---hHHHHHHHHcCcc
Confidence 45556688999999999999999999863 234433 3668888888765
No 268
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=53.40 E-value=2.3e+02 Score=27.83 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=27.8
Q ss_pred hhcCCCCHHHHHHHHHHhcCC-ChhhhhHHHHHHHHhhcCC
Q 011744 53 KDSQDPNPLIRALAVRTMGCI-RVDKITEYLCDPLQRCLKD 92 (478)
Q Consensus 53 kdL~~~n~~vr~~AL~~l~~i-~~~e~~~~l~~~i~~~l~~ 92 (478)
+.+.+.++..|..||..|..= +...+++.++..|-.....
T Consensus 185 ~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~ 225 (343)
T cd08050 185 EALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTV 225 (343)
T ss_pred HHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHh
Confidence 344457899999999998874 4456677666666665543
No 269
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.99 E-value=3.3e+02 Score=30.08 Aligned_cols=244 Identities=8% Similarity=0.031 Sum_probs=118.5
Q ss_pred hHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccc
Q 011744 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (478)
Q Consensus 79 ~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~ 158 (478)
.+.+.-.+-+++++....-.=.|+....+++.++|.-+-.+...=.|.+.+.+.|...+.+.+.+..+-.++. ..
T Consensus 22 ~~a~~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hl-----n~ 96 (970)
T KOG1988|consen 22 VNAVLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHL-----NK 96 (970)
T ss_pred hhHHHHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccc-----hh
Confidence 3455556788888766666668888899999999853211123345566777888888888877776532221 11
Q ss_pred cHHHHHHHHHhc----ccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHH
Q 011744 159 TSHTLSKLLTAL----NECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV 234 (478)
Q Consensus 159 ~~~~~~~Ll~~l----~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~ 234 (478)
.... -.+++.+ ...||.....+|++++-..+--++. +-...++..--++.+.+-.||+-.-..+.+..++...
T Consensus 97 v~n~-aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEf--n~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~FA 173 (970)
T KOG1988|consen 97 VLNG-AEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEF--NQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDFA 173 (970)
T ss_pred hhhh-hhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccc--cchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhhH
Confidence 1111 1222222 2358899888888887654321111 0111111111122223334443333333222222221
Q ss_pred HHHHHHHhhhHHHHhhc---CChhHHHHHHHHHHHHHhhC---ccchhhccceeeeccCCC------hhHHHHHHHHHHH
Q 011744 235 VRNLCKKMAPPLVTLLS---AEPEIQYVALRNINLIVQRR---PTILAHEIKVFFCKYNDP------IYVKMEKLEIMIK 302 (478)
Q Consensus 235 ~~~~~~~~~~~l~~ll~---~~~~ir~~aL~~l~~l~~~~---~~~~~~~~~~~~~l~~dd------~~ir~~al~lL~~ 302 (478)
. .+...+...+. -..-.|......+..+.... +.++.-.++.+..-..+| .+.-.+|.+.++.
T Consensus 174 ~-----si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A~ra~~l~m~lv~~tps~d~~v~fL~stT~Lasrs~~a 248 (970)
T KOG1988|consen 174 C-----SICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGASRAFGLCMSLVSGTPSIDRVVAFLYSTTNLASRSLVA 248 (970)
T ss_pred H-----HHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhhHHHHHHHHHHhcCCCcccceeeehhhhHHHHHHHHHH
Confidence 1 23333434442 22345555566666665432 222221111110000111 0122233333333
Q ss_pred hcCcccHHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHhc
Q 011744 303 LASDRNIDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIK 341 (478)
Q Consensus 303 l~~~~n~~~Iv~~L~~~l~-~~d~~~r~~~v~~i~~l~~~ 341 (478)
+.+-++.+++|++ +...-+|...++++..++.+
T Consensus 249 ------i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~r 282 (970)
T KOG1988|consen 249 ------ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAKR 282 (970)
T ss_pred ------hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhh
Confidence 2344667778887 44445666778888887776
No 270
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=52.77 E-value=1.6e+02 Score=25.78 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=47.8
Q ss_pred HHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 011744 300 MIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKD 374 (478)
Q Consensus 300 L~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~ 374 (478)
+-++ ++.|.+.+++++.....+.+++....++..|...+..-|.....|...+..+-...+..++..++..+.+
T Consensus 8 lnkl-t~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 8 LNKL-TPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQE 81 (209)
T ss_dssp HHHC-SSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHC-CHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 3444 6999999999999887666888888999998877766555555554444443222222444544444433
No 271
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=52.54 E-value=2.9e+02 Score=28.76 Aligned_cols=169 Identities=12% Similarity=0.137 Sum_probs=104.1
Q ss_pred cCCChhHHHHHHHHHHHhcCcccHHHHHHHHH-Hhh--h--------hcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 011744 286 YNDPIYVKMEKLEIMIKLASDRNIDQVLLEFK-EYA--T--------EVDVDFVRKAVRAIGRCAIKLERAAERCISVLL 354 (478)
Q Consensus 286 ~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~-~~l--~--------~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll 354 (478)
.+.+..|...|-+.|-++..+-+=..+|+.|. -|+ . -.++.+|..++.-+++-... ......++.++.
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-a~~~~~~~~i~~ 325 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-ATSFPNILQIVF 325 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-HhCCccHHHHHh
Confidence 34457899999999988876644456777777 344 2 24678888888877653211 112234555555
Q ss_pred HHhccc--chhHHHHHHHHH---HHHHhhCCcc-----hHHHHHHHHhhcCC-------CChhhHHHHHHHHhhcccCcc
Q 011744 355 ELIKIK--VNYVVQEAIIVI---KDIFRRYPNT-----YESIIATLCESLDT-------LDEPEAKASMIWIIGEYAERI 417 (478)
Q Consensus 355 ~ll~~~--~~~v~~~~~~~l---~~i~~~~~~~-----~~~~i~~L~~~l~~-------~~~~~~~~~~~~ilGE~~~~~ 417 (478)
..+... +..++......+ .....+.+.. +..+...++..++. ..+...++.+--.+|..+...
T Consensus 326 ~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~ 405 (501)
T PF13001_consen 326 DGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRA 405 (501)
T ss_pred ccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccC
Confidence 555555 345666666666 5555443321 23333334444420 112334555666788877665
Q ss_pred CC----HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCC
Q 011744 418 DN----ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (478)
Q Consensus 418 ~~----~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~ 455 (478)
+. --++++-+.+++..++++++..|-.|+.-+...++.
T Consensus 406 p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 406 PSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred cccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 43 347778888888899999999998888888776643
No 272
>PF14961 BROMI: Broad-minded protein
Probab=52.22 E-value=2.1e+02 Score=32.93 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=54.5
Q ss_pred HHHHhhcCCCCH-HHHHHHHHHhcCCChh-----hhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc
Q 011744 49 NTFVKDSQDPNP-LIRALAVRTMGCIRVD-----KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL 115 (478)
Q Consensus 49 n~l~kdL~~~n~-~vr~~AL~~l~~i~~~-----e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~ 115 (478)
|.+.+.++..+| .+|..|++.|++.... |.-+.+-..+..+|.|+++.+..++..-..|++...|-.
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~ 236 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLN 236 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchh
Confidence 455566766677 6999999999987644 555678889999999999999999999999998877643
No 273
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=52.19 E-value=47 Score=29.98 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=45.5
Q ss_pred cCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccc
Q 011744 55 SQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (478)
Q Consensus 55 L~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~ 117 (478)
..|+|...|..|+-+.-......-.+.+...+..++.|++.+|+|....+|..+.+.+|+.+.
T Consensus 124 ~~s~~~W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~ 186 (208)
T cd07064 124 STDENFWLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVR 186 (208)
T ss_pred HcCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHH
Confidence 357888888777754322222122345566688888999999999999999999999987654
No 274
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=51.95 E-value=25 Score=28.76 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc
Q 011744 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE 114 (478)
Q Consensus 76 ~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~ 114 (478)
+.-+..+...+.+-|++++|+|+.||...+-++.+..++
T Consensus 33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~ 71 (122)
T cd03572 33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS 71 (122)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH
Confidence 344556666677788888888888888888887776654
No 275
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=50.24 E-value=1.3e+02 Score=25.81 Aligned_cols=129 Identities=13% Similarity=0.159 Sum_probs=68.3
Q ss_pred CCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhc-ccCChhhHHHHHHHHhhccCCChHHHH------HHHHHh
Q 011744 131 DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL-NECTEWGQVFILDALSRYKAADAREAE------NIVERV 203 (478)
Q Consensus 131 d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l-~~~~~~~q~~ll~~l~~~~~~~~~~~~------~~l~~l 203 (478)
...+.++..|..++..+.+..+.. +...+...++.+ .+.+.-..+.++.++..+.|-.++... .+++.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~----~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREE----FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 566778888888887764332211 122333333322 122222555677778777776655443 355666
Q ss_pred hhhhc--CCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc--CChh-HHHHHHHHHHH
Q 011744 204 TPRLQ--HANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPE-IQYVALRNINL 266 (478)
Q Consensus 204 ~~~l~--~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~-ir~~aL~~l~~ 266 (478)
.++.. +.+..+...+++++..-. .+.+--....+...+-|-.+.+ ++.. +|..|+-.|.+
T Consensus 92 ~~~~~~~~~~~~~~~~~lell~aAc---~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 92 LPLASRKSKDRKVQKAALELLSAAC---IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHH-CTS-HHHHHHHHHHHHHHT---TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 66666 677788888888776532 1322222223345555555553 2333 66666555443
No 276
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=48.25 E-value=1.6e+02 Score=24.62 Aligned_cols=79 Identities=11% Similarity=0.069 Sum_probs=49.0
Q ss_pred HHHHhcccCchHHHHHHHHHHhhcC-CCCHHHHHHHHHHhcCC----Chh---hhh-HHHHHH-HHhhcCC---CChHHH
Q 011744 32 YLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCI----RVD---KIT-EYLCDP-LQRCLKD---DDPYVR 98 (478)
Q Consensus 32 ~l~~~~~~~~e~~~l~in~l~kdL~-~~n~~vr~~AL~~l~~i----~~~---e~~-~~l~~~-i~~~l~~---~~~~VR 98 (478)
-+.-..+.+++-..-++.+|+|-++ ++||.+...||..+-.+ |.+ +++ ..+... +.+.+.. .+..||
T Consensus 24 eicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk 103 (141)
T cd03565 24 EICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQ 103 (141)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHH
Confidence 3344444555556678999999998 47999888888865432 322 222 245555 5666643 344788
Q ss_pred HHHHHHHHHHHh
Q 011744 99 KTAAICVAKLYD 110 (478)
Q Consensus 99 k~A~~al~~i~~ 110 (478)
++....+..-..
T Consensus 104 ~kil~li~~W~~ 115 (141)
T cd03565 104 EKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHH
Confidence 888776665443
No 277
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=46.89 E-value=3.3e+02 Score=27.77 Aligned_cols=98 Identities=16% Similarity=0.268 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhh----cC-CCh---HHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhH
Q 011744 174 TEWGQVFILDALSRYKAADAREAENIVERVTPRL----QH-ANC---AVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (478)
Q Consensus 174 ~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l----~~-~~~---~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (478)
+++.--.++|++..+...-......+++.+...+ ++ +|| --.||++.++...... .+++.+..+...+.++
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~-~~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE-ADPEAVSQFEEALFPP 121 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G-GGHH---HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC-CChhHHHHHHHHHHHH
Confidence 5565555677776654333333344455444433 33 233 3678998888876431 3566566666678888
Q ss_pred HHHhhcCC-hhHHHHHHHHHHHHHhhCc
Q 011744 246 LVTLLSAE-PEIQYVALRNINLIVQRRP 272 (478)
Q Consensus 246 l~~ll~~~-~~ir~~aL~~l~~l~~~~~ 272 (478)
+...|..| .+.-=-+++.+..+.+.+|
T Consensus 122 f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 122 FQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888755 4544446888888888776
No 278
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=46.87 E-value=5.8e+02 Score=30.57 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=73.0
Q ss_pred HHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhh-c-CChhHHHHHHHHHHHHHhhCccchh
Q 011744 199 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-S-AEPEIQYVALRNINLIVQRRPTILA 276 (478)
Q Consensus 199 ~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~-~~~~ir~~aL~~l~~l~~~~~~~~~ 276 (478)
++.....++++.++.|+-=+......++.. -.++.+ +.+++.|+.+. + .+.++- .||..|..++..+|+.+.
T Consensus 436 iL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~--fds~~q---qeVv~~Lvthi~sg~~~ev~-~aL~vL~~L~~~~~~~l~ 509 (1426)
T PF14631_consen 436 ILSLAQSLLRSKEPSVREFGSHLYKYLFKE--FDSYCQ---QEVVGALVTHIGSGNSQEVD-AALDVLCELAEKNPSELQ 509 (1426)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHS--S-HHHH---HHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhh--ccchhH---HHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHhccHHHHH
Confidence 444455677888887765444444444332 223333 35677777666 4 455664 889999999999998877
Q ss_pred hcc---c-eeeeccCC-ChhHHHHHHHHHHHhc--CcccHHHHHHH----HHHhhhhcCHHHHHHHH
Q 011744 277 HEI---K-VFFCKYND-PIYVKMEKLEIMIKLA--SDRNIDQVLLE----FKEYATEVDVDFVRKAV 332 (478)
Q Consensus 277 ~~~---~-~~~~l~~d-d~~ir~~al~lL~~l~--~~~n~~~Iv~~----L~~~l~~~d~~~r~~~v 332 (478)
++- . ++.++.+= ...||+ ..++|..++ +..+...+-++ +.+++...++.+++.-|
T Consensus 510 ~fa~~l~giLD~l~~Ls~~qiR~-lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GI 575 (1426)
T PF14631_consen 510 PFATFLKGILDYLDNLSLQQIRK-LFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGI 575 (1426)
T ss_dssp HTHHHHHGGGGGGGG--HHHHHH-HHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhH
Confidence 652 2 33333322 356775 588887776 22222233333 44777888888877544
No 279
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=46.13 E-value=99 Score=27.33 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=60.4
Q ss_pred ChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC--CChHHHH
Q 011744 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRK 99 (478)
Q Consensus 22 ~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~--~~~~VRk 99 (478)
+...|.+.+-+= .+....|+.+ +.+....+-.|+....-|++.+..-...+... ...+|.. +++.||+
T Consensus 26 ~~~ek~~lW~~R-~~l~~~p~aL----~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~-----AL~LL~~~f~~~~VR~ 95 (184)
T PF00613_consen 26 TEEEKELLWKYR-YYLMNNPEAL----PKLLRSVDWWNPEEVSEAYQLLLQWPPISPED-----ALELLSPNFPDPFVRQ 95 (184)
T ss_dssp -HHHHHHHHHTH-HHHTTSGGGH----HHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHH-----HHHCTSTT---HHHHH
T ss_pred CHHHHHHHHHCC-HHhhhCchHH----HHHHhhCCCCchhhHHHHHHHHHcCCCCCHHH-----HHHHHHhhccHHHHHH
Confidence 556677766653 4566667753 45556777788887888988887643322222 2444443 5699999
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHHhhcCC
Q 011744 100 TAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (478)
Q Consensus 100 ~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~ 132 (478)
.|+.++-+ ..++.+. .+++.|.++|+-+
T Consensus 96 yAv~~L~~---~~d~~l~--~yLpQLVQaLr~e 123 (184)
T PF00613_consen 96 YAVRRLES---LSDEELL--FYLPQLVQALRYE 123 (184)
T ss_dssp HHHHHHCT---S-HHHHH--HHHHHHHHHGGGS
T ss_pred HHHHHHHH---cCchHHH--HHHHHHHHHheec
Confidence 99998865 3344444 5889999988643
No 280
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=46.08 E-value=1.6e+02 Score=24.58 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=52.5
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccc----cccHHHHHHHhhcCCChh----hHHHHHHHHHHH
Q 011744 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE----DRGFLESLKDLISDNNPM----VVANAVAALAEI 147 (478)
Q Consensus 76 ~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~----~~~~~~~l~~lL~d~~~~----V~~~a~~~l~~i 147 (478)
++.....+..|.+-+.+.+|.|.-.|+..+--+.+.+...+. ...|.+.+..++.++... |+.-++..+..-
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 445566777799999999999999998777777766543322 236888888877654332 777777766665
Q ss_pred hhh
Q 011744 148 EEN 150 (478)
Q Consensus 148 ~~~ 150 (478)
...
T Consensus 117 ~~~ 119 (140)
T PF00790_consen 117 AEA 119 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 281
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=45.29 E-value=78 Score=28.71 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=46.0
Q ss_pred HhhcCCCCHHHHHHHHH-HhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc
Q 011744 52 VKDSQDPNPLIRALAVR-TMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL 115 (478)
Q Consensus 52 ~kdL~~~n~~vr~~AL~-~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~ 115 (478)
..+.++.|+-.|..|+- .+...........+.+.+...+.|++++|||.-..||..+++..|+.
T Consensus 124 ~a~~~~~~~w~rraaiv~~l~~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e~ 188 (222)
T COG4912 124 AADAEEDNRWERRAAIVHQLVYKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNEL 188 (222)
T ss_pred HhccccchHHHHHHHHHHHHHHhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhchHH
Confidence 34556777766655554 44444444444468899999999999999999999999999865553
No 282
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.80 E-value=3.4e+02 Score=30.84 Aligned_cols=85 Identities=20% Similarity=0.374 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhCCcchHHHHHHHHh-----hcCCCChhhHHHHHHHHhhcccCccCC---HHHHHHHHhhcCCCCCHHH
Q 011744 367 EAIIVIKDIFRRYPNTYESIIATLCE-----SLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQV 438 (478)
Q Consensus 367 ~~~~~l~~i~~~~~~~~~~~i~~L~~-----~l~~~~~~~~~~~~~~ilGE~~~~~~~---~~~~l~~l~~~~~~~~~~v 438 (478)
+.+...+...+.+.+..+..+..+++ ...|+ +|+++..|+--+|.-....+. ...+++++=+.+.+-+.+|
T Consensus 264 e~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV-~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~V 342 (1048)
T KOG2011|consen 264 ESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDV-DPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTV 342 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccC-chHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHH
Confidence 33444444443333333344444444 12455 688999998888886655443 3356777777888899999
Q ss_pred HHHHHHHHHHHhcc
Q 011744 439 QLQLLTATVKLFLK 452 (478)
Q Consensus 439 k~~il~a~~Kl~~~ 452 (478)
|...+.++-|++.+
T Consensus 343 Rl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 343 RLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999987
No 283
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=44.50 E-value=79 Score=27.17 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHHhc
Q 011744 435 PAQVQLQLLTATVKLFL 451 (478)
Q Consensus 435 ~~~vk~~il~a~~Kl~~ 451 (478)
+..+|.+++-.+=|-..
T Consensus 126 s~~lrd~lilvLRKamf 142 (158)
T PF14676_consen 126 SPSLRDSLILVLRKAMF 142 (158)
T ss_dssp -HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 44555555555555443
No 284
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=44.48 E-value=3.7e+02 Score=27.64 Aligned_cols=383 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhcCC---ChhhhhHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhccc--ccccccHHHHHHHhhc
Q 011744 57 DPNPLIRALAVRTMGCI---RVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAE--LVEDRGFLESLKDLIS 130 (478)
Q Consensus 57 ~~n~~vr~~AL~~l~~i---~~~e~~~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~ 130 (478)
+..-..|..|++.++.. ...+-++.+-.....++.. ..+.+|+.|..-+..+.+..-+ ......|...+..--.
T Consensus 1 ~~~l~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~ 80 (464)
T PF11864_consen 1 DQPLSERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSN 80 (464)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCC
Q ss_pred CCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcc------------------------cCChhhHHHHHHHHh
Q 011744 131 DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN------------------------ECTEWGQVFILDALS 186 (478)
Q Consensus 131 d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~------------------------~~~~~~q~~ll~~l~ 186 (478)
++|-.-+..|+.+|..=.++- ..+..-+.+.+..-+...- +.++-....+++++.
T Consensus 81 ~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 159 (464)
T PF11864_consen 81 DDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLV 159 (464)
T ss_pred chhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHH
Q ss_pred -----hccCCChHHHHHHHHHhhhh-hcCCChHHHHHHHHHHHHhhh--hcCChHHHHHHHHHhhhHHHHhhcCChhHHH
Q 011744 187 -----RYKAADAREAENIVERVTPR-LQHANCAVVLSAVKMILQQME--LITSTDVVRNLCKKMAPPLVTLLSAEPEIQY 258 (478)
Q Consensus 187 -----~~~~~~~~~~~~~l~~l~~~-l~~~~~~V~~ea~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~~ll~~~~~ir~ 258 (478)
.+..-++++...+++.+... .+.+++.....++.++-.+.. .++++.+.. ++..|.+..+.. +..-
T Consensus 160 nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~-----~i~vLCsi~~~~-~l~~ 233 (464)
T PF11864_consen 160 NVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSP-----CIEVLCSIVNSV-SLCK 233 (464)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHH-----HHHHHhhHhccc-ccch
Q ss_pred HHHHHHHHHHhhC--ccchhhcccee--eeccCCC-hhHHHHHHHHHHHhc---CcccHHH-------HHHHHHHhhhhc
Q 011744 259 VALRNINLIVQRR--PTILAHEIKVF--FCKYNDP-IYVKMEKLEIMIKLA---SDRNIDQ-------VLLEFKEYATEV 323 (478)
Q Consensus 259 ~aL~~l~~l~~~~--~~~~~~~~~~~--~~l~~dd-~~ir~~al~lL~~l~---~~~n~~~-------Iv~~L~~~l~~~ 323 (478)
.+-+++..+...+ ...+.....++ ....+.+ ..+-+-|+.++..+. .++.+.. +++.|..-++..
T Consensus 234 ~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~ 313 (464)
T PF11864_consen 234 PSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN 313 (464)
T ss_pred hHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC
Q ss_pred CHHHHHHHHHHHHHHH-hcchhh-HHHHHHHHHHHhc-------------------ccchhHHHHHHHHHHHHHhhCCcc
Q 011744 324 DVDFVRKAVRAIGRCA-IKLERA-AERCISVLLELIK-------------------IKVNYVVQEAIIVIKDIFRRYPNT 382 (478)
Q Consensus 324 d~~~r~~~v~~i~~l~-~~~~~~-~~~~i~~ll~ll~-------------------~~~~~v~~~~~~~l~~i~~~~~~~ 382 (478)
++-+-.+++..+..+. .+|.+. .+.--+.+++++. ..-.....+++..+..+..+..-.
T Consensus 314 ~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~ 393 (464)
T PF11864_consen 314 SPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFN 393 (464)
T ss_pred CCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcC
Q ss_pred --hHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC-----HHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 011744 383 --YESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQLQLLTATVKL 449 (478)
Q Consensus 383 --~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~-----~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl 449 (478)
++.+...+.+.-+..+++.+...+ +--...+.-... ...+++.++ ....+++||..+|.++..+
T Consensus 394 g~~~~~~~f~~~~~~~lp~s~~~~vl-~~~~~~~~Ps~~~W~~n~~~ll~~F~--~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 394 GPKDKLFNFFERVHSYLPDSSALLVL-FYEERSCSPSNPDWLDNLQKLLDRFY--NRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred ccHHHHHHHHHHHhccCCHHHHHHHH-HHHhcccCCCChHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHhhC
No 285
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.00 E-value=1.1e+02 Score=30.26 Aligned_cols=94 Identities=9% Similarity=0.151 Sum_probs=66.8
Q ss_pred CChhHHHHHHHHHHHHHhhCccchhhccc-eeee----ccCCChhHHHHHHHHHHH----hcCcccHHHHHHHHHHhh--
Q 011744 252 AEPEIQYVALRNINLIVQRRPTILAHEIK-VFFC----KYNDPIYVKMEKLEIMIK----LASDRNIDQVLLEFKEYA-- 320 (478)
Q Consensus 252 ~~~~ir~~aL~~l~~l~~~~~~~~~~~~~-~~~~----l~~dd~~ir~~al~lL~~----l~~~~n~~~Iv~~L~~~l-- 320 (478)
.+.++|--|+.-+..+...+|..+..|.. .+.+ ..++|..+|....+++-. +|.+. ....+.-+..|+
T Consensus 70 hNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~sp~~~l~~~yi~~ 148 (393)
T KOG2149|consen 70 HNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QSPMVSLLMPYISS 148 (393)
T ss_pred chHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hcchHHHHHHHHHH
Confidence 57789999999999999989987775532 2221 246678899888877644 44443 344455555554
Q ss_pred --hhcCHHHHHHHHHHHHHHHhcchhhH
Q 011744 321 --TEVDVDFVRKAVRAIGRCAIKLERAA 346 (478)
Q Consensus 321 --~~~d~~~r~~~v~~i~~l~~~~~~~~ 346 (478)
...-+++|.+...-+..+.+.|++..
T Consensus 149 AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 149 AMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 45678999999999999999996543
No 286
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=43.46 E-value=1.5e+02 Score=22.85 Aligned_cols=52 Identities=13% Similarity=0.319 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhcch----hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhh
Q 011744 326 DFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (478)
Q Consensus 326 ~~r~~~v~~i~~l~~~~~----~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~ 378 (478)
+-+.+++..+...+.... ...+.|+.++-++...+.+++..| +.++..++.+
T Consensus 17 ~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E-~~RL~~iL~~ 72 (93)
T cd00238 17 EERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKE-LARLERLLEK 72 (93)
T ss_pred hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHH-HHHHHHHHhc
Confidence 456777777766655442 456889999999888888888887 6677777765
No 287
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=42.47 E-value=1.4e+02 Score=23.70 Aligned_cols=56 Identities=9% Similarity=0.092 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC--CChhhHHHHHHHHHHHhhh
Q 011744 93 DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD--NNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 93 ~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d--~~~~V~~~a~~~l~~i~~~ 150 (478)
.+..-|++|..++..+.+..++.+. .+.|.+..+|.. +.+.++..|+.+...+.+.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~--~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHIS--SARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 5556777788888877776665554 355666555542 3346777777777665543
No 288
>PRK13266 Thf1-like protein; Reviewed
Probab=42.40 E-value=2.7e+02 Score=25.46 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=19.9
Q ss_pred HHHHHHHHH--HhhhhcCHHHHHHHHHHHHHHH
Q 011744 309 IDQVLLEFK--EYATEVDVDFVRKAVRAIGRCA 339 (478)
Q Consensus 309 ~~~Iv~~L~--~~l~~~d~~~r~~~v~~i~~l~ 339 (478)
...+++||+ -++-.-+.+|+.+-+.++|-+.
T Consensus 26 Yrrvv~ELLVElHLl~~n~~F~yDplfAlGlvt 58 (225)
T PRK13266 26 YRRVVDELLVELHLLSVNSDFKYDPLFALGLVT 58 (225)
T ss_pred HHHHHHHHHHHHHHHHhccCceeCchHHhhHHH
Confidence 456777777 3344556677777777776543
No 289
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=41.63 E-value=5.4e+02 Score=29.23 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=49.0
Q ss_pred hHHHHHHHHhhcccCc--cCC--HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCc--chHHHHHHHH
Q 011744 401 EAKASMIWIIGEYAER--IDN--ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE--GPQQMIQVTL 466 (478)
Q Consensus 401 ~~~~~~~~ilGE~~~~--~~~--~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~--~~~~~~~~~l 466 (478)
+.+-.++-.|||.+-. ++. .-.+++.++..|...+-++-+..|..+++++.+.|+- +++.+++.+.
T Consensus 520 etk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~ 591 (1128)
T KOG2051|consen 520 ETKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHNIEMACVLLESCGRFLLRSPETKLRMRVFLEQIK 591 (1128)
T ss_pred hhhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhcccccHHHHHHHHHhcchhhhcChhHHHHHHHHHHHHH
Confidence 3455667888997643 222 3477899999999999999999999999999999973 2445555443
No 290
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=41.12 E-value=60 Score=28.24 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHHhc----CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchh
Q 011744 287 NDPIYVKMEKLEIMIKLA----SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER 344 (478)
Q Consensus 287 ~dd~~ir~~al~lL~~l~----~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~ 344 (478)
+|...+|+.|.+.+|.+- +.-++..+.+.+..=+.| +.+++.-...-+.+++...|.
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~ 98 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPE 98 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHH
Confidence 555899999999998873 233566677777777777 888887776667777766553
No 291
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.62 E-value=1.5e+02 Score=24.32 Aligned_cols=37 Identities=5% Similarity=0.159 Sum_probs=30.5
Q ss_pred cccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC
Q 011744 37 AKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI 73 (478)
Q Consensus 37 ~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i 73 (478)
...+++.+.-+...|.|-|++++|.|+.-||+.|-.+
T Consensus 29 t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l 65 (122)
T cd03572 29 TRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHL 65 (122)
T ss_pred HHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 3445566777889999999999999999999988765
No 292
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=39.17 E-value=1.8e+02 Score=22.48 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=43.0
Q ss_pred HhhhhcCHHHHHHHHHHHHHHHhcch----hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 011744 318 EYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (478)
Q Consensus 318 ~~l~~~d~~~r~~~v~~i~~l~~~~~----~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~ 377 (478)
.|+...+ +-|..++..+...+...+ ....+|+.++-+++..+.+++..| ..++..++.
T Consensus 12 ~f~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E-~~RL~~lL~ 73 (95)
T PF07749_consen 12 EFVAASD-DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKE-IARLERLLE 73 (95)
T ss_dssp HHHHS-C-HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHH-HHHHHHHHH
T ss_pred HHHcCcH-HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHH-HHHHHHHHh
Confidence 4555444 667788888777777653 467899999999999999999887 666777775
No 293
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=38.68 E-value=2.4e+02 Score=23.67 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=38.1
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhh-cCChhHHHHHHHHHHHHHhhCc
Q 011744 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP 272 (478)
Q Consensus 205 ~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~~~ 272 (478)
+.+...|++...+.+-.+.. ++..-+ .++..+.+-+ ++++++...||..+..++++=.
T Consensus 12 ~~l~~~dw~~ileicD~In~------~~~~~k----~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG 70 (139)
T cd03567 12 PSNREEDWEAIQAFCEQINK------EPEGPQ----LAVRLLAHKIQSPQEKEALQALTVLEACMKNCG 70 (139)
T ss_pred ccCCCCCHHHHHHHHHHHHc------CCccHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 45567788888888777753 222212 2334444444 5789999999999999888643
No 294
>PTZ00479 RAP Superfamily; Provisional
Probab=38.58 E-value=4.3e+02 Score=26.67 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCCHHHHHHH----HhhcCCCCCHHHHHHH
Q 011744 367 EAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLES----FLESFPEEPAQVQLQL 442 (478)
Q Consensus 367 ~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~~~~~l~~----l~~~~~~~~~~vk~~i 442 (478)
.+...+++.-..+++..+.+.+...+.|..+. +.....++|.+|... +.+ +.++.. +..++..=.+.--..+
T Consensus 102 ~Ilyg~gKsr~~~~efy~~~~~~v~~~L~~fs-sh~L~~i~wALsrL~--Ird-~~fL~~~ak~vl~r~~~~r~~dl~k~ 177 (435)
T PTZ00479 102 YIFYGYGKSRFLNPEFYEKMLKFVQPLLPNFY-SHSLMCIAWALNRVQ--IRD-EAFLSRFAKEVGEKFDDIRTTDLIKI 177 (435)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHhhhcC-ccHHHHHHHHHHhcC--CCc-HHHHHHHHHHHHhhccccCchhHHHH
Confidence 34445555444455566666666666666553 446677788887765 222 333333 3333333334444556
Q ss_pred HHHHHHHhccC
Q 011744 443 LTATVKLFLKK 453 (478)
Q Consensus 443 l~a~~Kl~~~~ 453 (478)
.++++|+....
T Consensus 178 ~nslakLg~~~ 188 (435)
T PTZ00479 178 CNSLAKLGGYT 188 (435)
T ss_pred HHHHHHhcCCc
Confidence 77777775533
No 295
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=38.57 E-value=3.1e+02 Score=24.96 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=20.5
Q ss_pred HHHHHHHHH--HhhhhcCHHHHHHHHHHHHHHH
Q 011744 309 IDQVLLEFK--EYATEVDVDFVRKAVRAIGRCA 339 (478)
Q Consensus 309 ~~~Iv~~L~--~~l~~~d~~~r~~~v~~i~~l~ 339 (478)
...+|+||+ .++-.-+.+|+.+-+.++|-+.
T Consensus 21 Yrrvv~ELLVe~HLl~~n~~F~yD~lfalG~vt 53 (216)
T PF11264_consen 21 YRRVVDELLVELHLLSVNKDFQYDPLFALGLVT 53 (216)
T ss_pred HHHHHHHHHHHHHHHHhccCceeCchHHhhHHH
Confidence 456777777 3444566678888887777554
No 296
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=38.02 E-value=79 Score=24.85 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc-cccccHHHHHHHh
Q 011744 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL-VEDRGFLESLKDL 128 (478)
Q Consensus 77 e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~-~~~~~~~~~l~~l 128 (478)
.+++.++..+..++.|-++.||.-|...+--+.+.+|+. +. ..|.+.+...
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~-~~~~kil~~f 58 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCS-GGWVKILPNF 58 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHh-hhHHHHHHHH
Confidence 356677788999999999999999999998888888887 33 2566655543
No 297
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=37.79 E-value=3.8e+02 Score=25.86 Aligned_cols=253 Identities=14% Similarity=0.080 Sum_probs=127.9
Q ss_pred HHHHHHHHhcccCChhhHH-----HHHHHHh-hccCCC-hHHHHHHHHHhhhhhcCCCh-HHHHHHHHHHHHhhhhcCCh
Q 011744 161 HTLSKLLTALNECTEWGQV-----FILDALS-RYKAAD-AREAENIVERVTPRLQHANC-AVVLSAVKMILQQMELITST 232 (478)
Q Consensus 161 ~~~~~Ll~~l~~~~~~~q~-----~ll~~l~-~~~~~~-~~~~~~~l~~l~~~l~~~~~-~V~~ea~~~i~~~~~~~~~~ 232 (478)
..+.+.++......+|.-. ++.+.++ ...+.. -.....+-..+..+++-.-| .|=..|..+...++..++..
T Consensus 10 ~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~ 89 (307)
T PF04118_consen 10 AEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPD 89 (307)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHH
Confidence 3455566655556777643 3556665 211110 01112344445555554433 56566666555554445544
Q ss_pred HHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccc----e-eeeccCCChhHHHHHHHHHHHhcCc
Q 011744 233 DVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIK----V-FFCKYNDPIYVKMEKLEIMIKLASD 306 (478)
Q Consensus 233 ~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~----~-~~~l~~dd~~ir~~al~lL~~l~~~ 306 (478)
.+.+.+ .-..+.|.-+++ ....+|..-+..+.+..-.-+..+.+..+ . +-.+.++......+++.++-.+.+.
T Consensus 90 ~L~~dl-~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~ 168 (307)
T PF04118_consen 90 GLAQDL-PIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA 168 (307)
T ss_pred HHHhhc-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHh
Confidence 433322 123444555554 56678877777766655322234444433 2 2234455577888888888777654
Q ss_pred ccHHHHHHHHHHhhhhcCHHHHHHHHHHHHH-HHh---------------cchhhHHHHHHHHHHHhcccchhHHHHHHH
Q 011744 307 RNIDQVLLEFKEYATEVDVDFVRKAVRAIGR-CAI---------------KLERAAERCISVLLELIKIKVNYVVQEAII 370 (478)
Q Consensus 307 ~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~-l~~---------------~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~ 370 (478)
-+-+..-+.+..-+. .+++.|.-++.-+.+ +.. -.+++..-.+..+...+.+.+--|...+.+
T Consensus 169 v~~~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LD 247 (307)
T PF04118_consen 169 VGDKYFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLD 247 (307)
T ss_pred cChhHHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHH
Confidence 333333444333322 234555555443321 111 123455677888888888887777777777
Q ss_pred HHHHHHhhCCcc-----h----HHHHHHHHhhcCCCChhhHHHHHHHHhhcccC
Q 011744 371 VIKDIFRRYPNT-----Y----ESIIATLCESLDTLDEPEAKASMIWIIGEYAE 415 (478)
Q Consensus 371 ~l~~i~~~~~~~-----~----~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~ 415 (478)
.+..-+--+... . +..+...+..+-.-.-+-.++.-.|++|.-..
T Consensus 248 lLl~~~PL~s~~~~~~~~~~d~~~Lv~a~l~~~lrrDmSLnRRl~~WLlG~~~~ 301 (307)
T PF04118_consen 248 LLLSHFPLDSPVLQSLLSPEDKELLVMAALKVVLRRDMSLNRRLWNWLLGPEDD 301 (307)
T ss_pred HHHHhCCCCCcchhhhCCHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHCCCCCC
Confidence 665543211111 1 11222222221111113347888999998654
No 298
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=37.46 E-value=3.5e+02 Score=25.35 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHhcCccc
Q 011744 290 IYVKMEKLEIMIKLASDRN 308 (478)
Q Consensus 290 ~~ir~~al~lL~~l~~~~n 308 (478)
.++|...|.++..++..++
T Consensus 110 E~LRLtsLGVIgaLvK~d~ 128 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDD 128 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--
T ss_pred chhhHhHHHHHHHHHcCCc
Confidence 6789999999999886544
No 299
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=37.28 E-value=4.1e+02 Score=26.04 Aligned_cols=110 Identities=19% Similarity=0.299 Sum_probs=62.6
Q ss_pred CChhHHHHHHHHHHHHHhhCccchhh----ccceee-----eccCCChhHHHHHHHHHHHhc-CcccHHHHHHHHHHhhh
Q 011744 252 AEPEIQYVALRNINLIVQRRPTILAH----EIKVFF-----CKYNDPIYVKMEKLEIMIKLA-SDRNIDQVLLEFKEYAT 321 (478)
Q Consensus 252 ~~~~ir~~aL~~l~~l~~~~~~~~~~----~~~~~~-----~l~~dd~~ir~~al~lL~~l~-~~~n~~~Iv~~L~~~l~ 321 (478)
+.-++.--|..++..+..+++.+... +...|+ ++.++..-.||.++.+|..+. +..|... +..|+.
T Consensus 176 ~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~v----m~~yi~ 251 (335)
T PF08569_consen 176 PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNV----MTRYIS 251 (335)
T ss_dssp SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHH----HHHHTT
T ss_pred CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHH----HHHHHC
Confidence 45567777777777777666544332 222221 233445556666666666543 4444322 112222
Q ss_pred hcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHH
Q 011744 322 EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATL 390 (478)
Q Consensus 322 ~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L 390 (478)
....+..++.+|++....+.-|+.+++.-.+. +|..-..+.+.|
T Consensus 252 ------------------------~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA-Np~K~~~I~~iL 295 (335)
T PF08569_consen 252 ------------------------SPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA-NPNKPPPIVDIL 295 (335)
T ss_dssp -------------------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-BHHHHHHH
T ss_pred ------------------------CHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh-CCCCChHHHHHH
Confidence 23568899999999999999999999987764 576555555544
No 300
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=36.85 E-value=1e+02 Score=23.75 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=25.2
Q ss_pred chhHHHHHHHHHHHHHhh----CCcchHHHHHHHHhhcCCCChhh-HHHHHHHHhhccc
Q 011744 361 VNYVVQEAIIVIKDIFRR----YPNTYESIIATLCESLDTLDEPE-AKASMIWIIGEYA 414 (478)
Q Consensus 361 ~~~v~~~~~~~l~~i~~~----~~~~~~~~i~~L~~~l~~~~~~~-~~~~~~~ilGE~~ 414 (478)
.+.+++.+...+..+.++ +|.++.++...+.+.+.|-+.|- .+-.+++.+++.|
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 344555555555555543 23344455555555444322222 3445555555554
No 301
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=35.41 E-value=3.9e+02 Score=25.29 Aligned_cols=33 Identities=24% Similarity=0.551 Sum_probs=27.5
Q ss_pred HHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc
Q 011744 240 KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP 272 (478)
Q Consensus 240 ~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~ 272 (478)
--++|++..++. .++.+|.-|++.+..+..+-|
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 457888888887 589999999999999998644
No 302
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=34.54 E-value=55 Score=27.55 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=34.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD 92 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~ 92 (478)
-+.+..-|.++|+.++.+||+++.....|.+.++ -..+.+++.|
T Consensus 19 ~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY-~d~L~~Lldd 62 (141)
T PF07539_consen 19 YDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPY-KDNLENLLDD 62 (141)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhH-HHHHHHHcCc
Confidence 3456677899999999999999999988877665 4667776665
No 303
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.23 E-value=3e+02 Score=29.72 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=38.1
Q ss_pred chhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHH
Q 011744 342 LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAK 403 (478)
Q Consensus 342 ~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~ 403 (478)
|.++.+|+++++..+...-...=.+.+...+..++..+|+.....+..++..-++++.++.+
T Consensus 580 ~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k 641 (667)
T KOG2286|consen 580 YGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKK 641 (667)
T ss_pred hCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHH
Confidence 34466777776665543322222233444555667778888888888888877777655544
No 304
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=33.47 E-value=3.3e+02 Score=28.41 Aligned_cols=139 Identities=10% Similarity=0.172 Sum_probs=78.5
Q ss_pred HHHHHHHhhhhcCHHHHHHHH--HHHHHHHhcchh-----hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcc--
Q 011744 312 VLLEFKEYATEVDVDFVRKAV--RAIGRCAIKLER-----AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT-- 382 (478)
Q Consensus 312 Iv~~L~~~l~~~d~~~r~~~v--~~i~~l~~~~~~-----~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~-- 382 (478)
|++-|++-+.+ |+++.+.. ..|+.....|++ -.+.++|++.++++..++........+++.++-+..+.
T Consensus 432 I~elLi~~Ls~--Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 432 IVELLIDALSN--PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred hHHHHHHHhcC--ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 44445555544 44444433 344444444532 23578999999999888888877788888777543321
Q ss_pred hHHH----HHHHHhhcCCCChhh--HHHHHHHHhhcccCcc-C-----------CHHH-HHHHHhhcCCCCCHHHHHHHH
Q 011744 383 YESI----IATLCESLDTLDEPE--AKASMIWIIGEYAERI-D-----------NADE-LLESFLESFPEEPAQVQLQLL 443 (478)
Q Consensus 383 ~~~~----i~~L~~~l~~~~~~~--~~~~~~~ilGE~~~~~-~-----------~~~~-~l~~l~~~~~~~~~~vk~~il 443 (478)
.+.. ++.++++ ++||. +...+..++..|.... + .|.+ +++.+++++..-+|.--...+
T Consensus 510 f~~Lakig~~kvl~~---~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~ 586 (743)
T COG5369 510 FKFLAKIGVEKVLSY---TNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGC 586 (743)
T ss_pred hhhHHhcCHHHHHHH---hcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhH
Confidence 1111 3344443 34444 4677788888775421 1 1444 667777776554443333335
Q ss_pred HHHHHHhccCCC
Q 011744 444 TATVKLFLKKPT 455 (478)
Q Consensus 444 ~a~~Kl~~~~~~ 455 (478)
--++.+++-...
T Consensus 587 yilv~~aa~d~~ 598 (743)
T COG5369 587 YILVRNAACDDT 598 (743)
T ss_pred HHHHHHHhccch
Confidence 556677664443
No 305
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.26 E-value=3e+02 Score=26.54 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=50.6
Q ss_pred HHHhhc-CChhHHHHHHHHHHHHHhhCccchhhc----cceeeeccCCChhHHHHHHHHHHHhcCcccH-HHHHHHHHHh
Q 011744 246 LVTLLS-AEPEIQYVALRNINLIVQRRPTILAHE----IKVFFCKYNDPIYVKMEKLEIMIKLASDRNI-DQVLLEFKEY 319 (478)
Q Consensus 246 l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~----~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~-~~Iv~~L~~~ 319 (478)
++.+++ .+|.+|.+|.+.+..++......+.++ ++.+..+..+... .+-|...|.++....-+ +.+++.++++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~k~ 86 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLLKV 86 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456775 689999999999999887633344332 2222222222222 44677777777644433 3444444444
Q ss_pred hh----hcCHHHHHHHHHHHHHHHh
Q 011744 320 AT----EVDVDFVRKAVRAIGRCAI 340 (478)
Q Consensus 320 l~----~~d~~~r~~~v~~i~~l~~ 340 (478)
+- +.-......++-.+.+++.
T Consensus 87 l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 87 LMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHhcCcccchHHHHHHHHHHhcc
Confidence 32 2323444444445555543
No 306
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.72 E-value=4.1e+02 Score=29.79 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh---hccccccc---ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhh
Q 011744 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD---INAELVED---RGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 77 e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~---~~p~~~~~---~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 150 (478)
+|+..+....+..+.|++-.+|-+|..++.-... .+++.+-+ ..| |.+...+.++||.++.-|+..+..++..
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W-~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTW-PSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhh-hHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 4566677778889999999999999988765432 33332211 145 6677778889999999999999999887
Q ss_pred CC
Q 011744 151 SS 152 (478)
Q Consensus 151 ~~ 152 (478)
.+
T Consensus 878 sg 879 (1014)
T KOG4524|consen 878 SG 879 (1014)
T ss_pred hh
Confidence 64
No 307
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=30.74 E-value=3.2e+02 Score=22.88 Aligned_cols=57 Identities=26% Similarity=0.232 Sum_probs=36.7
Q ss_pred hhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHH-hhcCChhHHHHHHHHHHHHHhhCc
Q 011744 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVT-LLSAEPEIQYVALRNINLIVQRRP 272 (478)
Q Consensus 206 ~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~~~~ir~~aL~~l~~l~~~~~ 272 (478)
.+...|++...+.+..+.. ++..- +.++..|.+ +-++++++...||..+..++++-.
T Consensus 16 ~l~~~dw~~ileicD~In~------~~~~~----k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG 73 (142)
T cd03569 16 LLGEPDLASILEICDMIRS------KDVQP----KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCG 73 (142)
T ss_pred ccCccCHHHHHHHHHHHhC------CCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC
Confidence 4556778887777766653 11111 233444544 445889999999999999888633
No 308
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=30.44 E-value=3.8e+02 Score=23.65 Aligned_cols=48 Identities=10% Similarity=-0.007 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHH-hhCCcchHHHHHHHHhhcC
Q 011744 346 AERCISVLLELIKIKVNYVVQEAIIVIKDIF-RRYPNTYESIIATLCESLD 395 (478)
Q Consensus 346 ~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~-~~~~~~~~~~i~~L~~~l~ 395 (478)
..|++..+++++... ..+..++.++.-=+ ...++....+...|++++.
T Consensus 68 ~~~~F~~l~~LL~~~--~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 68 SSEYFPRLVKLLDLP--EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 456666666665553 23344444433211 1122333444455555553
No 309
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=30.43 E-value=4.2e+02 Score=24.06 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=39.6
Q ss_pred HHHHHHHHH--HhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHhhCCcchH
Q 011744 309 IDQVLLEFK--EYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK--VNYVVQEAIIVIKDIFRRYPNTYE 384 (478)
Q Consensus 309 ~~~Iv~~L~--~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~--~~~v~~~~~~~l~~i~~~~~~~~~ 384 (478)
...+++||+ .++-.-+.+|+.+-+.++|-+.. .+-+..+ .+.-...+...+++-+..+|+..+
T Consensus 26 Yrrvv~ELLVElHLl~~n~~F~yDplfAlGlvt~-------------fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r 92 (214)
T TIGR03060 26 YRRVVDELLVELHLLSHQSDFKYDPLFALGLVTV-------------FDRFMEGYRPEEHLDALFDALCNSNGFDPEQLR 92 (214)
T ss_pred HHHHHHHHHHHHHHHHhccCceeCchHHhhHHHH-------------HHHHHcCCCChHHHHHHHHHHHHhcCCCHHHHH
Confidence 456777777 33445566777777777765432 2222222 233445566666666656666555
Q ss_pred HHHHHHHhh
Q 011744 385 SIIATLCES 393 (478)
Q Consensus 385 ~~i~~L~~~ 393 (478)
.....+.+.
T Consensus 93 ~dA~~l~~~ 101 (214)
T TIGR03060 93 EDAKQLLEQ 101 (214)
T ss_pred HHHHHHHHH
Confidence 555555443
No 310
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=30.36 E-value=6.9e+02 Score=26.59 Aligned_cols=123 Identities=11% Similarity=0.087 Sum_probs=76.0
Q ss_pred CChhHHHHHHHHHHHHHhhCccchhh--cccee-eeccCCChhHHHHHHHHHHHhcCc-ccHH---HHHHH----HHHhh
Q 011744 252 AEPEIQYVALRNINLIVQRRPTILAH--EIKVF-FCKYNDPIYVKMEKLEIMIKLASD-RNID---QVLLE----FKEYA 320 (478)
Q Consensus 252 ~~~~ir~~aL~~l~~l~~~~~~~~~~--~~~~~-~~l~~dd~~ir~~al~lL~~l~~~-~n~~---~Iv~~----L~~~l 320 (478)
-++-+|-.++..+..-.+..|+.|.+ .++.+ +.|.+...+||.....++..++.. .+.+ +.++. +++++
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~ 366 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFL 366 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999998754 34444 334445589999999999888743 3444 33333 33444
Q ss_pred h-hcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchh---HHHHHHHHHHHHH
Q 011744 321 T-EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNY---VVQEAIIVIKDIF 376 (478)
Q Consensus 321 ~-~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~---v~~~~~~~l~~i~ 376 (478)
+ +.|- +|...++.++.+-..-. -....+..+..++-+..+. ...+.+..++++.
T Consensus 367 r~D~d~-VRi~sik~l~~lr~lg~-L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~ 424 (740)
T COG5537 367 RTDSDC-VRICSIKSLCYLRILGV-LSSSEILIVSSCMLDIIPDSRENIVESVESICKID 424 (740)
T ss_pred hhccch-hhHHHHHHHHHHHHhcc-cchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 3 4555 77777777665544321 1123455555555554332 4556666666554
No 311
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=30.35 E-value=1.1e+02 Score=23.04 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=40.1
Q ss_pred cccHHHHHHHHH--HhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcch
Q 011744 306 DRNIDQVLLEFK--EYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY 383 (478)
Q Consensus 306 ~~n~~~Iv~~L~--~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~ 383 (478)
-.|++.+++.|+ +++.+.+.+..+ ++ +....-+.-+++++...|..+++-....+.++-..+++++
T Consensus 14 I~~v~plLD~Ll~n~~it~E~y~~V~---------a~---~T~qdkmRkLld~v~akG~~~k~~F~~iL~e~~~~y~~~~ 81 (85)
T cd08324 14 IRNTQCLVDNLLKNDYFSTEDAEIVC---------AC---PTQPDKVRKILDLVQSKGEEVSEYFLYLLQQLADAYVDLR 81 (85)
T ss_pred HHhhHHHHHHHhccCCccHHHHHHHH---------hC---CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhh
Confidence 356777888877 356655544321 11 3334456666777777777777777777777665555543
No 312
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=29.99 E-value=1.1e+03 Score=28.98 Aligned_cols=300 Identities=14% Similarity=0.127 Sum_probs=160.5
Q ss_pred CChhHHHHHHHHHHHhcccC---chHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC-----hhh-----hhHHHHHHHH
Q 011744 21 ENLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-----VDK-----ITEYLCDPLQ 87 (478)
Q Consensus 21 ~~~~~Krl~yl~l~~~~~~~---~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~-----~~e-----~~~~l~~~i~ 87 (478)
.-|.+.|++-++....-... +..=-.+.+.+.+--.++|..++..|+..|..+. ..| +-+.++.++.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 36777787777655442211 2222234455556555677777777777554432 223 2334566666
Q ss_pred hhcC-CCChHHHHHHHHHHHHHHhhcccccccccHHHHHH---HhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHH
Q 011744 88 RCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK---DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTL 163 (478)
Q Consensus 88 ~~l~-~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~---~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~ 163 (478)
..+. ..+..||...+.|+.+|.....+.+.. +|...+. ....|+++.++..|+..+..|..+............+
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence 6555 477899999999999999877777765 8865543 3456888999999999888876542110000112344
Q ss_pred HHHHHhccc-----CChhhHHHHHHHHhhc---c---------C-C-----------------------ChHHH----HH
Q 011744 164 SKLLTALNE-----CTEWGQVFILDALSRY---K---------A-A-----------------------DAREA----EN 198 (478)
Q Consensus 164 ~~Ll~~l~~-----~~~~~q~~ll~~l~~~---~---------~-~-----------------------~~~~~----~~ 198 (478)
..++..+.. .++-.....+..|... . + . +.+.. ..
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 555554421 1111122222222210 0 0 0 00000 12
Q ss_pred HHHHhhhhhcCCChHHHHHHHHHHHHhhhhcC---ChHHHHHHHHHhhhHHHHhhcC-----------------C-----
Q 011744 199 IVERVTPRLQHANCAVVLSAVKMILQQMELIT---STDVVRNLCKKMAPPLVTLLSA-----------------E----- 253 (478)
Q Consensus 199 ~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~---~~~~~~~~~~~~~~~l~~ll~~-----------------~----- 253 (478)
++..+.....+....|+-.|+.++......-+ +++.-..+...++-++..-+.. +
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 34444444556778899999988877653211 2344444444455555433210 0
Q ss_pred -----hhHHHHHHHHHHHHHhhCccchhhccce----e-eeccCCChhHHHHHHHHHHHhc-------CcccHHHHHHHH
Q 011744 254 -----PEIQYVALRNINLIVQRRPTILAHEIKV----F-FCKYNDPIYVKMEKLEIMIKLA-------SDRNIDQVLLEF 316 (478)
Q Consensus 254 -----~~ir~~aL~~l~~l~~~~~~~~~~~~~~----~-~~l~~dd~~ir~~al~lL~~l~-------~~~n~~~Iv~~L 316 (478)
.+.--.||+.+..+...+-+.+.+.++. + .|...+...+.+.....|..+. +++.|+.|+..+
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~ 1507 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSL 1507 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 1233456666666655543333333331 1 2334445566666666665543 567888888887
Q ss_pred HHhhh
Q 011744 317 KEYAT 321 (478)
Q Consensus 317 ~~~l~ 321 (478)
.+-..
T Consensus 1508 ~~lf~ 1512 (1780)
T PLN03076 1508 KEAAN 1512 (1780)
T ss_pred HHHHH
Confidence 75543
No 313
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=29.72 E-value=1.1e+03 Score=28.95 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc---cc----cccccHHHHHHHhh-cCCChhhHHHHHHHHHHHh
Q 011744 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA---EL----VEDRGFLESLKDLI-SDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 77 e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p---~~----~~~~~~~~~l~~lL-~d~~~~V~~~a~~~l~~i~ 148 (478)
.+...+.+...+.-.+++..|+-.|+..+.++..+.- ++ ++. ++...+...+ +..+..|+.-.+..+.+|.
T Consensus 1133 ~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQk-efLkPfe~im~~s~~~eVrE~ILeCv~qmI 1211 (1780)
T PLN03076 1133 SIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQN-EFMKPFVIVMRKSNAVEIRELIIRCVSQMV 1211 (1780)
T ss_pred hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 4555677777887778788899999998877655322 21 111 4555555544 3567788888888888776
Q ss_pred hhC
Q 011744 149 ENS 151 (478)
Q Consensus 149 ~~~ 151 (478)
...
T Consensus 1212 ~s~ 1214 (1780)
T PLN03076 1212 LSR 1214 (1780)
T ss_pred HHH
Confidence 543
No 314
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=29.64 E-value=3.7e+02 Score=23.26 Aligned_cols=94 Identities=19% Similarity=0.145 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC--CChHHHH
Q 011744 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRK 99 (478)
Q Consensus 22 ~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~--~~~~VRk 99 (478)
+...|++.+- ...+...+|+. ...+.+..+=.|+....-|...|..-...+.... ..+|.. .++.||+
T Consensus 27 ~~~ek~llW~-~R~~l~~~p~a----L~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~a-----LeLL~~~f~~~~VR~ 96 (166)
T cd00870 27 TDEEKDLIWK-FRFYLTNNKKA----LTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDA-----LELLSPYFTNPVVRK 96 (166)
T ss_pred CHHHHHHHHH-hHHHHhhCcHH----HHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHH-----HHHcCccCCCHHHHH
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHHhhc
Q 011744 100 TAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (478)
Q Consensus 100 ~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~ 130 (478)
-|+.++.+ ..++.+. .+.+.|.++|+
T Consensus 97 yAV~~L~~---~sd~eL~--~yL~QLVQaLK 122 (166)
T cd00870 97 YAVSRLKL---ASDEELL--LYLLQLVQALK 122 (166)
T ss_pred HHHHHHHh---CCHHHHH--HHHHHHHHHHH
No 315
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=29.46 E-value=1.4e+02 Score=26.93 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=19.7
Q ss_pred HHHHHHHHH--HhhhhcCHHHHHHHHHHHHHHH
Q 011744 309 IDQVLLEFK--EYATEVDVDFVRKAVRAIGRCA 339 (478)
Q Consensus 309 ~~~Iv~~L~--~~l~~~d~~~r~~~v~~i~~l~ 339 (478)
...+++||+ .++-.-+.+|+.+.+.++|-+.
T Consensus 24 Yrrvv~ELLVE~HLl~~n~~f~yD~lfAlGlvt 56 (206)
T PLN03060 24 YSNVIQELLVQQHLMRYNATYKYDPIFALGFVT 56 (206)
T ss_pred HHHHHHHHHHHHHHHHhccCceeCchHHhhHHH
Confidence 456777777 3344556677777777776543
No 316
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=29.29 E-value=2.5e+02 Score=24.53 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=61.3
Q ss_pred CChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC--CChHHH
Q 011744 21 ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVR 98 (478)
Q Consensus 21 ~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~--~~~~VR 98 (478)
-+.+.|.+.+-+=- +...+|+. .+.+.+..+-.|+.-..-|...|..-...+... ...+|.. +++.||
T Consensus 19 L~~eek~llW~~R~-~~~~~p~a----L~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~-----aLeLL~~~f~d~~VR 88 (171)
T cd00872 19 LTEEDKELLWKLRH-ECRKKPQA----LPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQ-----ALELLDCNFPDEHVR 88 (171)
T ss_pred CCHHHHHHHHHHHH-HHhhCcHH----HHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHH-----HHHHCCCcCCCHHHH
Confidence 45677888777633 44445665 345556677788887888888877654322222 3445543 679999
Q ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHhhcC
Q 011744 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISD 131 (478)
Q Consensus 99 k~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d 131 (478)
+.|+.++-++ +++.+. .+.+.|.++|+-
T Consensus 89 ~yAV~~L~~~---sd~eL~--~yL~QLVQaLKy 116 (171)
T cd00872 89 EFAVRCLEKL---SDDELL--QYLLQLVQVLKY 116 (171)
T ss_pred HHHHHHHHhC---CHHHHH--HHHHHHHHHHHc
Confidence 9999988763 344343 467777777753
No 317
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.28 E-value=80 Score=25.43 Aligned_cols=30 Identities=37% Similarity=0.426 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 122 LESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 122 ~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
++.|.+-|.|+++.|+..|+.+|.+.+...
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 477888889999999999999999988764
No 318
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=29.22 E-value=7.2e+02 Score=27.09 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=63.1
Q ss_pred CCCChHHHHHHHHHHHHHHhhcc---cc----c-ccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHH
Q 011744 91 KDDDPYVRKTAAICVAKLYDINA---EL----V-EDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (478)
Q Consensus 91 ~~~~~~VRk~A~~al~~i~~~~p---~~----~-~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~ 162 (478)
.+.++.+-++++=|+..+--..+ +. + +-..-.+.+..+|...|+.|+.++..+|..+..+.. ..-..-...
T Consensus 529 ~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r-nk~ligk~a 607 (717)
T KOG1048|consen 529 LSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR-NKELIGKYA 607 (717)
T ss_pred HhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch-hhhhhhcch
Confidence 45778888888887777643221 11 1 112345888999999999999999999988765421 111111357
Q ss_pred HHHHHHhcccCCh-----hhHHH-HHHHHhhccCCC
Q 011744 163 LSKLLTALNECTE-----WGQVF-ILDALSRYKAAD 192 (478)
Q Consensus 163 ~~~Ll~~l~~~~~-----~~q~~-ll~~l~~~~~~~ 192 (478)
++.|++.|+...+ |..+. ++..+..+..++
T Consensus 608 ~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~ 643 (717)
T KOG1048|consen 608 IPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN 643 (717)
T ss_pred HHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh
Confidence 8889999987555 54432 455554444333
No 319
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=29.06 E-value=4.6e+02 Score=25.35 Aligned_cols=62 Identities=10% Similarity=0.175 Sum_probs=47.3
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhhcccc------cccccHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 011744 86 LQRCLKDDDPYVRKTAAICVAKLYDINAEL------VEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (478)
Q Consensus 86 i~~~l~~~~~~VRk~A~~al~~i~~~~p~~------~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 147 (478)
..+++.+.|-..|+.+...++.++...|.. +..+.-...+..+|.|+....+..|....--.
T Consensus 217 ~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvf 284 (342)
T KOG1566|consen 217 YEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVF 284 (342)
T ss_pred HHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHH
Confidence 778889999999999999999988755532 22223456777889999999999888777543
No 320
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.01 E-value=7.8e+02 Score=26.78 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=79.1
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD 92 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~ 92 (478)
+.+.++.|++..+-.-.--.+...+..+.|- +.+|.+..=.-+++.. .|+..|+.++.|- -..++..+...+..
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--~l~~~l~~y~~~t~s~---~~~~il~~~~~P~-~K~~~~~l~~~~~~ 81 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSDREP--WLVNGLVDYYLSTNSQ---RALEILVGVQEPH-DKHLFDKLNDYFVK 81 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhccchH--HHHHHHHHHHhhcCcH---HHHHHHHhcCCcc-HHHHHHHHHHHHcC
Confidence 4555666666554333333334444443332 3466666544333332 3666777776551 12333445666653
Q ss_pred CChHHHHHHHHHHHHHHhhccccc---ccccHHHHHHH-hhcCCChhhHHHHHHHHHHHhhhCCC
Q 011744 93 DDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKD-LISDNNPMVVANAVAALAEIEENSSR 153 (478)
Q Consensus 93 ~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~~~ 153 (478)
+.-|..|+.-++++.+..|..+ .+..+++.|.+ +..|.+..|+.+|+.+|.-+.+.-+.
T Consensus 82 --~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 82 --PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred --chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 4678888888999999877432 22244444444 55799999999999999888877654
No 321
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.00 E-value=1.9e+02 Score=23.02 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=40.9
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 88 ~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
++-.+..+..-.+...-+..+...+++... ..+..|.+-|.++++.++.-|+.++..+.++.
T Consensus 7 ~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~--~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~ 68 (115)
T cd00197 7 KATSNENMGPDWPLIMEICDLINETNVGPK--EAVDAIKKRINNKNPHVVLKALTLLEYCVKNC 68 (115)
T ss_pred HHcCCCCCCCCHHHHHHHHHHHHCCCccHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 333333333334455555555554555444 57788888889999999999999998887764
No 322
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=28.85 E-value=1.1e+03 Score=28.42 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=61.2
Q ss_pred hcCcccHHHH------HHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHH-----HHHHHHHhcccchhHHHHHHHH
Q 011744 303 LASDRNIDQV------LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERC-----ISVLLELIKIKVNYVVQEAIIV 371 (478)
Q Consensus 303 l~~~~n~~~I------v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~-----i~~ll~ll~~~~~~v~~~~~~~ 371 (478)
+++-+...+| +..|++++++....+..+++.+|-++.-+-+++.+.. +..+.+++...+.-+.......
T Consensus 516 IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaA 595 (2195)
T KOG2122|consen 516 IATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAA 595 (2195)
T ss_pred hhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHH
Confidence 4555555554 5568888888888888899999999988888776644 5577788888888888889999
Q ss_pred HHHHHhhCCc
Q 011744 372 IKDIFRRYPN 381 (478)
Q Consensus 372 l~~i~~~~~~ 381 (478)
+++++..-|.
T Consensus 596 LrNLln~RPA 605 (2195)
T KOG2122|consen 596 LRNLLNFRPA 605 (2195)
T ss_pred HHHHhcCCch
Confidence 9999876554
No 323
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.70 E-value=4e+02 Score=31.26 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHH----HHHHHhhc
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFL----ESLKDLIS 130 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~----~~l~~lL~ 130 (478)
.+...+.++..|+.+.||+-|+.++.+++..+...++..-|. ..+.++|.
T Consensus 997 ~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd 1050 (1610)
T KOG1848|consen 997 MLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLD 1050 (1610)
T ss_pred HHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhc
Confidence 366778888899999999999999999998776666543443 34445554
No 324
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.55 E-value=5.8e+02 Score=25.09 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l 125 (478)
+..+.+.|. ++.-++.|-++++.=. .+-++. ..++..+++..+-+++..++.+.-+..|++++- .-...+
T Consensus 79 ~s~ll~~l~--d~ck~~~A~r~la~~~ga~~~~it-----~~~la~~~~~~~l~ksL~al~~lt~~qpdl~da-~g~~vv 150 (461)
T KOG4199|consen 79 TTELLEQLA--DECKKSLAHRVLAGKNGAHDALIT-----LLELAESPNESVLKKSLEAINSLTHKQPDLFDA-EAMAVV 150 (461)
T ss_pred HHHHHHHHH--HHHhhhHHHHHHhccCCCcchhhh-----HHHHhhCCchhHHHHHHHHHHHhhcCCcchhcc-ccHHHH
Confidence 345555555 2556667777666422 112221 222456677777777777777777777776653 333445
Q ss_pred HHhh
Q 011744 126 KDLI 129 (478)
Q Consensus 126 ~~lL 129 (478)
..+|
T Consensus 151 v~lL 154 (461)
T KOG4199|consen 151 LKLL 154 (461)
T ss_pred HHHH
Confidence 5544
No 325
>COG4335 DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=28.32 E-value=1.1e+02 Score=25.72 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChh---------hhhHHHHHHHHhhcCCC
Q 011744 23 LELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD---------KITEYLCDPLQRCLKDD 93 (478)
Q Consensus 23 ~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~---------e~~~~l~~~i~~~l~~~ 93 (478)
+..+-..-.+..-+...+++.. ...+..=-.+.|+.+|.+|-...- ++.| +....+.+.+.++-.|+
T Consensus 19 ~t~rgtse~~~rpll~~~~eat---~a~l~~wSe~~ne~vrrLssec~r-~rlPws~~L~~~~~~~~~~~~il~al~adK 94 (167)
T COG4335 19 FTMRGTSEFASRPLLPKDAEAT---FAPLLRWSEHQNEHVRRLSSECTR-PRLPWSKLLLKLQKDPSPVNMILTALKADK 94 (167)
T ss_pred HHHHhhHHHHHhccCCCCHHHH---HHHHhhhccCccHHHHHHHhcccC-CCCchHHHHHHHhhcCcchhHHHHhhHhHH
Confidence 4444444444555566665542 333445556889999988765432 1111 11112333344555678
Q ss_pred ChHHHHHHHHHHHHHHhhcccc
Q 011744 94 DPYVRKTAAICVAKLYDINAEL 115 (478)
Q Consensus 94 ~~~VRk~A~~al~~i~~~~p~~ 115 (478)
+-||||+.+.-+-.+++.+|+.
T Consensus 95 ~lyvrksvan~lndi~k~hp~f 116 (167)
T COG4335 95 ELYVRKSVANNLNDIKKVHPSF 116 (167)
T ss_pred HHHHHHHHHHHHHHhhhcChHH
Confidence 8899999999998888888764
No 326
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=27.89 E-value=1.7e+02 Score=22.44 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhcccccccccHHHHHHHhhc---CCChhhHHHHHHHHHHHhh
Q 011744 97 VRKTAAICVAKLYDINAELVEDRGFLESLKDLIS---DNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 97 VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~---d~~~~V~~~a~~~l~~i~~ 149 (478)
-|-.|+++++.+....|..++ .|+|.+...|. .....+..++=.++.+..+
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP--~w~P~~l~~La~~~~~~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVP--PWMPEVLEELARHANDPQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS---HHHHHHHHHHTTSSS-SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 467888999999999999888 48877765543 1233455555566665533
No 327
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=27.76 E-value=4.8e+02 Score=28.39 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=53.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 82 l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
=.|.+...+.+.++.+.-.|+--+.++...+.+. +..-+=++.+..+|..++..|+.+|+.+|..+.-..
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGK 306 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhccc
Confidence 3566788888999999999998888876554322 221234688999999999999999999998876544
No 328
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=27.67 E-value=5.2e+02 Score=24.29 Aligned_cols=83 Identities=14% Similarity=0.245 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHhhhh---cCHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHhcccchhHHHHH
Q 011744 293 KMEKLEIMIKLASDRNIDQVLLEFKEYATE---VDVDFVRKAVRAIGRCAIKL-ERAAERCISVLLELIKIKVNYVVQEA 368 (478)
Q Consensus 293 r~~al~lL~~l~~~~n~~~Iv~~L~~~l~~---~d~~~r~~~v~~i~~l~~~~-~~~~~~~i~~ll~ll~~~~~~v~~~~ 368 (478)
-....+.|..+|+..+...+-.-+..|.+. ...++-+.++..|+ +.| |......+..++.+++++..-++..+
T Consensus 132 ~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~---~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 132 CIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLR---EAFFPDHEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HHhCchhHHHHHHHHHHHHhCCcHHHHHHH
Confidence 345667788888665555555555555432 33456666666554 544 56667788899999999888888888
Q ss_pred HHHHHHHHhh
Q 011744 369 IIVIKDIFRR 378 (478)
Q Consensus 369 ~~~l~~i~~~ 378 (478)
...+.-++..
T Consensus 209 L~iL~~ll~~ 218 (262)
T PF14225_consen 209 LQILKVLLPH 218 (262)
T ss_pred HHHHHHHhcc
Confidence 8888877754
No 329
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=27.48 E-value=3.3e+02 Score=23.14 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=58.6
Q ss_pred CChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC--CChHHH
Q 011744 21 ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVR 98 (478)
Q Consensus 21 ~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~--~~~~VR 98 (478)
-+...|.+.+.+-.. ...+|.. .+.+.+.+.-.|+....-+...+..=...+... ...+|.. .++.||
T Consensus 19 l~~~ek~llw~~R~~-~~~~p~~----lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~-----aL~LL~~~~~~~~vr 88 (152)
T cd00864 19 LTEEEKELLWKFRYY-LLNVPKA----LPKLLKSVNWNDDEEVSELYQLLKWWAPLSPED-----ALELLSPKYPDPVVR 88 (152)
T ss_pred CCHHHHHHHHHHHHH-HhhChHH----HHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHH-----HHHHcCCcCCCHHHH
Confidence 456677777776443 3344443 344445555577887788888777632222221 2333433 669999
Q ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHhhcC
Q 011744 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISD 131 (478)
Q Consensus 99 k~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d 131 (478)
+-|+.++-++ .++.+. .+++.|.++|+-
T Consensus 89 ~yAv~~L~~~---~~~~l~--~ylpQLVQaLky 116 (152)
T cd00864 89 QYAVRVLESA---SDDELL--LYLPQLVQALKY 116 (152)
T ss_pred HHHHHHHHhC---CHHHHH--HHHHHHHHHHhc
Confidence 9999988663 333343 578888888863
No 330
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=26.57 E-value=7e+02 Score=25.45 Aligned_cols=169 Identities=15% Similarity=0.232 Sum_probs=80.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHhcCCCh------hhhhHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHh----hcccc---
Q 011744 50 TFVKDSQDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYD----INAEL--- 115 (478)
Q Consensus 50 ~l~kdL~~~n~~vr~~AL~~l~~i~~------~e~~~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~----~~p~~--- 115 (478)
.+.++=..+|+++...-.|.++.... ..+++.+...+....+. +||.-=.....+++-+.+ .+|+.
T Consensus 34 ~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~ 113 (435)
T PF03378_consen 34 LIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQ 113 (435)
T ss_dssp HHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---H
T ss_pred HHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHH
Confidence 33444457899999999998887652 23444444444444444 566555555555554444 34542
Q ss_pred cccccHHHHHHHhhcCCChhhH---HHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHH----HHHHHHhhc
Q 011744 116 VEDRGFLESLKDLISDNNPMVV---ANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQV----FILDALSRY 188 (478)
Q Consensus 116 ~~~~~~~~~l~~lL~d~~~~V~---~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~----~ll~~l~~~ 188 (478)
+++ .+.|.+...|...-.... ..-+..+.+.... +...+.....+..|+ .+.-|-+- -+.|+|+.|
T Consensus 114 ~E~-~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~p~~y~~L~~~Ll----~p~lWe~~gniPalvrLL~a~ 186 (435)
T PF03378_consen 114 FEE-ALFPPFQEILQQDVQEFIPYVFQILAQLLELRPS--SPLPDAYKQLFPPLL----SPALWERRGNIPALVRLLQAY 186 (435)
T ss_dssp HHH-HHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S--TTTGGGHHHHT----SGGGGGSTTTHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCcHHHHHHHHHHc----CcchhccCCCcCcHHHHHHHH
Confidence 332 556777776754333333 3344444454441 111222222233333 34556432 245666655
Q ss_pred cCCChHH------HHHHHHHhhhhhcCC-ChHHHHHHHHHHHHh
Q 011744 189 KAADARE------AENIVERVTPRLQHA-NCAVVLSAVKMILQQ 225 (478)
Q Consensus 189 ~~~~~~~------~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~~ 225 (478)
.++++.. ...++.....++.+. +..--|+-...+...
T Consensus 187 i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~ 230 (435)
T PF03378_consen 187 IKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVEN 230 (435)
T ss_dssp HHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred HHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence 4332221 234666666666654 444445555555553
No 331
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=26.53 E-value=5.9e+02 Score=26.78 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=37.7
Q ss_pred CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHH-HHhcchhhHHHHHHHHHHHhcccc
Q 011744 305 SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGR-CAIKLERAAERCISVLLELIKIKV 361 (478)
Q Consensus 305 ~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~-l~~~~~~~~~~~i~~ll~ll~~~~ 361 (478)
.++.+..-+++|..|+...++.- +.+++-+.. +.++-++..+.++.++.--+.++.
T Consensus 193 ~P~~i~PhlP~l~~lL~q~~p~~-~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 193 QPQPINPHLPELLALLSQLEPEQ-YHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDST 249 (851)
T ss_pred CCCccCcccHHHHHHhcCCCHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcccc
Confidence 45666667888888888887654 344444443 455667777888888877666654
No 332
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=26.15 E-value=4.4e+02 Score=24.46 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHhc-CcccHHH
Q 011744 290 IYVKMEKLEIMIKLA-SDRNIDQ 311 (478)
Q Consensus 290 ~~ir~~al~lL~~l~-~~~n~~~ 311 (478)
.+=|+.||+.|.+|+ .+.|++-
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDl 160 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDL 160 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcce
Confidence 456777777777775 4556544
No 333
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=26.00 E-value=7.8e+02 Score=25.80 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccC--chHHHHHHHHHHhhcCCC----------CHHHHHHHHHH
Q 011744 2 TVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ--PDLAILAVNTFVKDSQDP----------NPLIRALAVRT 69 (478)
Q Consensus 2 ~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~--~e~~~l~in~l~kdL~~~----------n~~vr~~AL~~ 69 (478)
++-.+..-+|-+|++.+-+.+...|+-+ +..+.... ..++=-.+..+-+...-+ +-....-+|--
T Consensus 200 ~LS~ElQlYy~~It~a~~g~~~~~r~eA---L~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 200 VLSVELQLYYKEITEACTGSDEPLRQEA---LQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHH---HHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Q ss_pred hcCCChhhhhHHHHHHHHhhc----------CCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcC--CChh
Q 011744 70 MGCIRVDKITEYLCDPLQRCL----------KDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISD--NNPM 135 (478)
Q Consensus 70 l~~i~~~e~~~~l~~~i~~~l----------~~~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d--~~~~ 135 (478)
=.++.-...+..++|.|..|+ .|..+.+|.-|+..+.++++..++.... ..+...+.+.+.| ++.+
T Consensus 277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~s 356 (576)
T KOG2549|consen 277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLS 356 (576)
T ss_pred CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCch
Q ss_pred hHHHHHHHHHHHhhh
Q 011744 136 VVANAVAALAEIEEN 150 (478)
Q Consensus 136 V~~~a~~~l~~i~~~ 150 (478)
..+.|+..|.++...
T Consensus 357 t~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 357 THYGAIAGLSELGHE 371 (576)
T ss_pred hhhhHHHHHHHhhhh
No 334
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=25.64 E-value=9e+02 Score=26.38 Aligned_cols=113 Identities=11% Similarity=0.140 Sum_probs=61.0
Q ss_pred HHHHHHHhcCcccHHHHHHHHH-Hh---hhhcCHHHHHHHHHHHHHHHhc-chhh---HHHHHHHHHHHhcccchhHHHH
Q 011744 296 KLEIMIKLASDRNIDQVLLEFK-EY---ATEVDVDFVRKAVRAIGRCAIK-LERA---AERCISVLLELIKIKVNYVVQE 367 (478)
Q Consensus 296 al~lL~~l~~~~n~~~Iv~~L~-~~---l~~~d~~~r~~~v~~i~~l~~~-~~~~---~~~~i~~ll~ll~~~~~~v~~~ 367 (478)
|..+....-.+.+.+.++..|. ++ ..+.+.-.-.-.++++..+|.+ |+.. .+.|-.++-+ +..++..-.-.
T Consensus 503 ~~~l~~~~~~k~~~e~~~~iLk~~~~~~~~~~n~~~i~lfvq~~l~lGSKSfSH~f~~lek~~~vfk~-l~~~~e~~q~~ 581 (759)
T KOG1104|consen 503 AVQLIVAFREKATAEEIVNILKSEDESEIGSFNRLKIILFVQTLLDLGSKSFSHAFSALEKYHTVFKK-LCEDSETKQII 581 (759)
T ss_pred HHHHHHHHhccCCHHHHHHHHhcCccccccCCcceehhhHHHHHHHhccchhhhHHHHHHHHHHHHHH-HhcCCchhHHH
Confidence 6667777777888899999888 22 2222222223446777777765 2221 1223333323 33333222345
Q ss_pred HHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcc
Q 011744 368 AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEY 413 (478)
Q Consensus 368 ~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~ 413 (478)
+++.+-.+...+|...--.+++++.+- -+ +..+.+-|+.++-
T Consensus 582 vl~~vft~Wk~n~Qm~~v~~Dkml~~~-ii---~~~aVv~WiF~~~ 623 (759)
T KOG1104|consen 582 VLEAVFTFWKANPQMGFVLTDKMLKYQ-II---DCSAVVRWIFSEE 623 (759)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHhccc-cc---cHHHHHHHhcCHH
Confidence 566777777777766555566665431 11 2244556888875
No 335
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=25.37 E-value=96 Score=24.62 Aligned_cols=22 Identities=32% Similarity=0.179 Sum_probs=16.0
Q ss_pred HHhhcCCCChHHHHHHHHHHHH
Q 011744 86 LQRCLKDDDPYVRKTAAICVAK 107 (478)
Q Consensus 86 i~~~l~~~~~~VRk~A~~al~~ 107 (478)
+..++.|+++.||-.|+..+++
T Consensus 52 Ll~LL~hpn~~VRl~AA~~~L~ 73 (106)
T PF09450_consen 52 LLPLLKHPNMQVRLWAAAHTLR 73 (106)
T ss_dssp GGGGGGSS-HHHHHHHHHTTTT
T ss_pred HHHHHcCCChhHHHHHHHHHHH
Confidence 6777888888888877766554
No 336
>PF07778 CENP-I: Mis6 ; InterPro: IPR012485 Centromere protein Cenp-I (also known as Mis6) is an essential centromere connector protein acting during G1-S phase of the cell cycle. Mis6 is thought to be required for recruiting Cenp-A, the centromere- specific histone H3 variant; an important event for centromere function and chromosome segregation during mitosis [, ].
Probab=25.37 E-value=7.6e+02 Score=25.82 Aligned_cols=137 Identities=17% Similarity=0.203 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHH--H
Q 011744 330 KAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASM--I 407 (478)
Q Consensus 330 ~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~--~ 407 (478)
..+..|...|..- .-....++.+++++..++ .....+..+.+.+-......+.++.+.+-.|..-.-+...++. =
T Consensus 82 ~~i~~l~s~A~~~-GL~~~~l~~Ll~~~~s~~--l~~~~~~~lik~LiP~~~v~~~~v~~ivs~Lg~~k~s~~~Q~~llr 158 (511)
T PF07778_consen 82 STIKTLESLAYEN-GLSPEALDRLLDLILSPK--LDQATNTRLIKCLIPAERVSEDVVVRIVSWLGVGKPSPSTQALLLR 158 (511)
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHhcCC--cchHHHHHHHHhcCcCCcCCHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3455555555432 223456788888877766 5555566666655433345566777777666533222233333 3
Q ss_pred HHhhcccCccCCHH---------------HHHHHHhh---cCCCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Q 011744 408 WIIGEYAERIDNAD---------------ELLESFLE---SFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLKYY 469 (478)
Q Consensus 408 ~ilGE~~~~~~~~~---------------~~l~~l~~---~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~ 469 (478)
|++.-|. .++... +.++..+- .+......||-.=+.+++.+..+.+. ++-+..+|..+
T Consensus 159 WLi~v~~-~id~~~~L~~~Y~vlF~~L~~~~lrp~~chLL~llTrr~~VkpfRi~~Ll~L~~k~g~---~~~L~~LL~ly 234 (511)
T PF07778_consen 159 WLIAVYD-FIDDKDVLSKLYGVLFNLLDYESLRPYLCHLLYLLTRREHVKPFRIQKLLDLQNKFGM---DPHLQGLLSLY 234 (511)
T ss_pred HHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhccCC---CHHHHHHHHHH
Confidence 8887773 333211 11121111 11234566777778888888776665 57777888887
Q ss_pred HHHH
Q 011744 470 TCLC 473 (478)
Q Consensus 470 ~~~~ 473 (478)
+..|
T Consensus 235 K~y~ 238 (511)
T PF07778_consen 235 KSYY 238 (511)
T ss_pred HHhC
Confidence 7644
No 337
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=25.19 E-value=5.4e+02 Score=23.68 Aligned_cols=146 Identities=13% Similarity=0.156 Sum_probs=81.2
Q ss_pred hcCCChHHHHHHHHHHHHhhhh----c-CChHHHHHH--HHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhC-ccch--
Q 011744 207 LQHANCAVVLSAVKMILQQMEL----I-TSTDVVRNL--CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR-PTIL-- 275 (478)
Q Consensus 207 l~~~~~~V~~ea~~~i~~~~~~----~-~~~~~~~~~--~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~-~~~~-- 275 (478)
+++.++.|.-.++.+...+.+. + .+++.-+.+ +..+...+..+.. .++.+|..+++-+..++... +..-
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4556777777776666554331 2 222222222 2233444555554 57889999999999988653 1111
Q ss_pred ---hhccceeee--ccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcC--HHHHHHHHHHHHHHHhcchhhHHH
Q 011744 276 ---AHEIKVFFC--KYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVD--VDFVRKAVRAIGRCAIKLERAAER 348 (478)
Q Consensus 276 ---~~~~~~~~~--l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d--~~~r~~~v~~i~~l~~~~~~~~~~ 348 (478)
...-..+.. ...+=+.++..+|+- ....+++.|+.++.+.. ..+-..++.+++.++.+=|.....
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~--------Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~ 153 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEA--------EANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSR 153 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHH--------HHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHH--------HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 001111111 111113444443332 24467888888887654 667778888999999887888888
Q ss_pred HHHHHHHHhccc
Q 011744 349 CISVLLELIKIK 360 (478)
Q Consensus 349 ~i~~ll~ll~~~ 360 (478)
++++++.+-...
T Consensus 154 Il~~ll~~~~~~ 165 (239)
T PF11935_consen 154 ILPALLSFNPNL 165 (239)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHhcCccc
Confidence 999988875544
No 338
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=24.80 E-value=3.9e+02 Score=21.92 Aligned_cols=90 Identities=9% Similarity=0.014 Sum_probs=50.6
Q ss_pred CCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchh------hHHHHHHHHHHHhccc
Q 011744 287 NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER------AAERCISVLLELIKIK 360 (478)
Q Consensus 287 ~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~------~~~~~i~~ll~ll~~~ 360 (478)
++|...-....+.+-. ++.+.+..+..|...+++.++..+..++..+..|...-++ ....+++.+.+++...
T Consensus 15 ~~D~~~il~icd~I~~--~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~ 92 (133)
T cd03561 15 EPDWALNLELCDLINL--KPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS 92 (133)
T ss_pred CccHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC
Confidence 4455554445555432 3556777788888888777877777766665555544321 1124444566666542
Q ss_pred ---chhHHHHHHHHHHHHHhh
Q 011744 361 ---VNYVVQEAIIVIKDIFRR 378 (478)
Q Consensus 361 ---~~~v~~~~~~~l~~i~~~ 378 (478)
...|+.-+...+...-..
T Consensus 93 ~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 93 PKYDPKVREKALELILAWSES 113 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 334555555555554443
No 339
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.71 E-value=8.1e+02 Score=25.51 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHh--------------ccCCCcchHHHHHHHHHHHHHHHhhh
Q 011744 433 EEPAQVQLQLLTATVKLF--------------LKKPTEGPQQMIQVTLKYYTCLCFKL 476 (478)
Q Consensus 433 ~~~~~vk~~il~a~~Kl~--------------~~~~~~~~~~~~~~~l~~~~~~~~~~ 476 (478)
.+.-++|.+++..++++. .+|-.+ =+.-+-+|+..|++.|-.+
T Consensus 249 ~er~E~klm~~~lisRliG~HkL~l~~fY~fl~~yl~p-hqrDvTqIl~~aaQa~Hd~ 305 (616)
T KOG2229|consen 249 KERFEVKLMLMKLISRLIGIHKLFLFGFYPFLQRYLQP-HQRDVTQILAAAAQASHDL 305 (616)
T ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHcCc-chhhHHHHHHHHHHhccCC
Confidence 466788888887776542 223222 1344567788888777543
No 340
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=24.35 E-value=32 Score=25.27 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC
Q 011744 41 PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI 73 (478)
Q Consensus 41 ~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i 73 (478)
|+.+-..++-+..-..|..|.-|++|+++|++|
T Consensus 34 p~~aGYTi~El~~L~RSsv~~QR~~al~~L~~I 66 (73)
T PF08620_consen 34 PEAAGYTIQELFHLSRSSVPSQRCIALQTLGRI 66 (73)
T ss_pred CCcCCcCHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 333333444444555667777777777777654
No 341
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=24.12 E-value=4.2e+02 Score=23.07 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=53.7
Q ss_pred hhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHH
Q 011744 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQ 87 (478)
Q Consensus 8 ~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~ 87 (478)
..+++-+++...-.+....+-+|-.+..-...+|+.++ .-|-.. -+++.||..|.+.|....+.++. ..+|.+.
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aL---eLL~~~--f~d~~VR~yAV~~L~~~sd~eL~-~yL~QLV 111 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQAL---ELLDCN--FPDEHVREFAVRCLEKLSDDELL-QYLLQLV 111 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHH---HHCCCc--CCCHHHHHHHHHHHHhCCHHHHH-HHHHHHH
Confidence 34555666666677777777777766666666665442 222222 35699999999999998877765 4466777
Q ss_pred hhcCCC
Q 011744 88 RCLKDD 93 (478)
Q Consensus 88 ~~l~~~ 93 (478)
++++.+
T Consensus 112 QaLKyE 117 (171)
T cd00872 112 QVLKYE 117 (171)
T ss_pred HHHHcc
Confidence 777764
No 342
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=23.55 E-value=9.4e+02 Score=25.88 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=42.3
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhc-CCChhhHHHHHHHHHHH
Q 011744 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEI 147 (478)
Q Consensus 90 l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~-d~~~~V~~~a~~~l~~i 147 (478)
..++++.+|+.+...+.++....|+... ...+..+|. .+.++++..++..+-+.
T Consensus 451 ~~~p~~~lR~~~~~ll~~iL~~~p~~~r----f~~i~dlLe~c~~~~~k~~~I~~lKd~ 505 (633)
T PF08568_consen 451 VYCPSPELRKIAFTLLTRILHLFPEETR----FKFIRDLLENCPFESLKASAIGWLKDE 505 (633)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHCCcHhH----HHHHHHHHhcCCCHhHHHHHHHHHHHH
Confidence 3579999999999999999999987542 377777775 46788888888777553
No 343
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=23.44 E-value=1.8e+02 Score=30.23 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=68.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCCCh-------hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc--ccc-
Q 011744 49 NTFVKDSQDPNPLIRALAVRTMGCIRV-------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL--VED- 118 (478)
Q Consensus 49 n~l~kdL~~~n~~vr~~AL~~l~~i~~-------~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~--~~~- 118 (478)
..+.+.|++|+-.+...|...+++... .-+-..++..+.+.+.+++...|++....+.++.-.+.+. ++.
T Consensus 434 elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~L 513 (743)
T COG5369 434 ELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFL 513 (743)
T ss_pred HHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhH
Confidence 344566777777788888888887532 2333457777888888999999999999999864332211 110
Q ss_pred c-cHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 011744 119 R-GFLESLKDLISDNNPMVVANAVAALAEI 147 (478)
Q Consensus 119 ~-~~~~~l~~lL~d~~~~V~~~a~~~l~~i 147 (478)
+ -=+..+..+.+|++.+|+.+.+..+...
T Consensus 514 akig~~kvl~~~NDpc~~vq~q~lQilrNf 543 (743)
T COG5369 514 AKIGVEKVLSYTNDPCFKVQHQVLQILRNF 543 (743)
T ss_pred HhcCHHHHHHHhcCcccccHHHHHHHHHhc
Confidence 0 1136677788999999999888877654
No 344
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=22.38 E-value=5.6e+02 Score=29.42 Aligned_cols=88 Identities=14% Similarity=0.214 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHHHHhhCccchhhc-----cceeeeccCCChhHHHHHHHHHHHhcCcccHH-HHH-----HHHHHh-
Q 011744 252 AEPEIQYVALRNINLIVQRRPTILAHE-----IKVFFCKYNDPIYVKMEKLEIMIKLASDRNID-QVL-----LEFKEY- 319 (478)
Q Consensus 252 ~~~~ir~~aL~~l~~l~~~~~~~~~~~-----~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~-~Iv-----~~L~~~- 319 (478)
+++.++..+|+.+..+....| .+... +..+..+.+.-++.|..+|++||+++....+. .-. .+++..
T Consensus 1784 ~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~ 1862 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATANKE-CVTDLATCNVLTTLLTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSIL 1862 (2235)
T ss_pred CCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHH
Confidence 678899999999998887544 22221 12222234556799999999999998653322 211 222322
Q ss_pred hhhcCHHHHHHHHHHHHHHHh
Q 011744 320 ATEVDVDFVRKAVRAIGRCAI 340 (478)
Q Consensus 320 l~~~d~~~r~~~v~~i~~l~~ 340 (478)
..+.++..|..+...++++.-
T Consensus 1863 c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1863 CLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred hccCcHHHHHHHHHHHHHhhh
Confidence 234567788888877777553
No 345
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.29 E-value=3.2e+02 Score=26.98 Aligned_cols=62 Identities=26% Similarity=0.190 Sum_probs=37.4
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHhhcc-cccccccHHHHHHHhhcCCChhhHHHHHHHHHH
Q 011744 85 PLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (478)
Q Consensus 85 ~i~~~l~~~~~~VRk~A~~al~~i~~~~p-~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~ 146 (478)
.+...++++++.=|.+++..+...+...| .-.+-..+.+....|+.|..+.|+..++.+|.+
T Consensus 11 ~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 11 DLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 35555666666666666666666665555 212112455666667777777777777777665
No 346
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=22.13 E-value=8.3e+02 Score=27.09 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=35.4
Q ss_pred ChhHHHHHHHHHHH-hc-----CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcc---h---------hhHHHHH
Q 011744 289 PIYVKMEKLEIMIK-LA-----SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL---E---------RAAERCI 350 (478)
Q Consensus 289 d~~ir~~al~lL~~-l~-----~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~---~---------~~~~~~i 350 (478)
|...+-.++..+.. +. +++|.+.+....-.|...- ==+.+-+++++.|+..| . .+.+..+
T Consensus 628 DSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKL--LKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVl 705 (762)
T PF03635_consen 628 DSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYASKL--LKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVL 705 (762)
T ss_dssp SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHC---SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHH
Confidence 34455566665533 21 4667777777766663211 00123355666666554 1 2445555
Q ss_pred HHHHHHhcccch
Q 011744 351 SVLLELIKIKVN 362 (478)
Q Consensus 351 ~~ll~ll~~~~~ 362 (478)
+.+-+-++.++.
T Consensus 706 ECLQKaLriAds 717 (762)
T PF03635_consen 706 ECLQKALRIADS 717 (762)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 666555555543
No 347
>PF14961 BROMI: Broad-minded protein
Probab=21.94 E-value=4e+02 Score=30.79 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=40.3
Q ss_pred CCChhHHHHHHHHHHH-----hcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q 011744 287 NDPIYVKMEKLEIMIK-----LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGR 337 (478)
Q Consensus 287 ~dd~~ir~~al~lL~~-----l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~ 337 (478)
+.+..+|..|++.|.. +.+.++|..+-+.|..-+.|+|+.+...+++--++
T Consensus 173 ~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak 228 (1296)
T PF14961_consen 173 GQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAK 228 (1296)
T ss_pred CCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3458899999999865 45778899999999999999998887776654443
No 348
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=21.56 E-value=9.4e+02 Score=25.14 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHhhCccchhhccceeeeccCCC-hhHHHHHHHHHHHhcCcc--cHHHHHHHHHHhhhhcCHHHHHHH
Q 011744 255 EIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDP-IYVKMEKLEIMIKLASDR--NIDQVLLEFKEYATEVDVDFVRKA 331 (478)
Q Consensus 255 ~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd-~~ir~~al~lL~~l~~~~--n~~~Iv~~L~~~l~~~d~~~r~~~ 331 (478)
+-+|++.+.+..+... ++-..+.++..+..|+ .+||...+.++|.|-... .-..++.-+++-+.+.+..+...+
T Consensus 172 ~~k~l~~~~fesflk~---l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsska 248 (821)
T COG5593 172 QNKYLKQRIFESFLKN---LRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKA 248 (821)
T ss_pred cchHHHHHHHHHHHHH---HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhh
Confidence 3345554444444431 2223334444566777 789999999998876433 222344444444555544444444
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHhc
Q 011744 332 VRAIGRCAIKLERAAERCISVLLELIK 358 (478)
Q Consensus 332 v~~i~~l~~~~~~~~~~~i~~ll~ll~ 358 (478)
--.|-.+-..+|....-++|-+.++..
T Consensus 249 sY~ilkLe~~hP~mk~VV~d~Iedf~f 275 (821)
T COG5593 249 SYVILKLELLHPGMKEVVLDGIEDFYF 275 (821)
T ss_pred hHHHHHHHhcCCchhHHHHhhhhHhee
Confidence 444444444455444445555554433
No 349
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.25 E-value=1.7e+02 Score=30.11 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=51.7
Q ss_pred HHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhc----CCChh---hhh-HHHHHHHHhhcCC--CChHHHHH
Q 011744 31 LYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMG----CIRVD---KIT-EYLCDPLQRCLKD--DDPYVRKT 100 (478)
Q Consensus 31 l~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~----~i~~~---e~~-~~l~~~i~~~l~~--~~~~VRk~ 100 (478)
+-++-+.+.+++...-++-.|+|-+++.++.++-+||..|- |.+.. +++ +.+++...++... .+-.||++
T Consensus 23 leIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~k 102 (470)
T KOG1087|consen 23 LEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREK 102 (470)
T ss_pred HHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHH
Confidence 34455556665556667889999999999999999999554 33322 111 1344555555544 46688988
Q ss_pred HHHHHHHHHh
Q 011744 101 AAICVAKLYD 110 (478)
Q Consensus 101 A~~al~~i~~ 110 (478)
++..+-.-..
T Consensus 103 iL~LI~~W~~ 112 (470)
T KOG1087|consen 103 ILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHHH
Confidence 8876654443
No 350
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=20.85 E-value=6.8e+02 Score=23.23 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcch----hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHH
Q 011744 328 VRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAK 403 (478)
Q Consensus 328 r~~~v~~i~~l~~~~~----~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~ 403 (478)
..-.+.++..+|.+.- ...+.|.+.+..+ ...++.-...++..+..+..++|....-++++|+++ +-+ +| .
T Consensus 53 i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l-~~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~-~ii-~~--~ 127 (253)
T PF09090_consen 53 IDVFVQCLLHIGSKSFSHVLSALERYKEVLKEL-EAESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNY-GII-SP--S 127 (253)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH--TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-TSS--H--H
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhc-CCC-CH--H
Confidence 3445788888888742 2335556666554 222334456778888888888887766677777653 222 33 4
Q ss_pred HHHHHHhhccc
Q 011744 404 ASMIWIIGEYA 414 (478)
Q Consensus 404 ~~~~~ilGE~~ 414 (478)
..+-|++++..
T Consensus 128 ~Vv~w~f~~~~ 138 (253)
T PF09090_consen 128 AVVNWVFSPEN 138 (253)
T ss_dssp HHHHHHTSGGG
T ss_pred HHHHHHcCccc
Confidence 56789999886
No 351
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=20.70 E-value=5.1e+02 Score=21.67 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=37.7
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHH-Hhhc-CChhHHHHHHHHHHHHHhhCccch
Q 011744 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLV-TLLS-AEPEIQYVALRNINLIVQRRPTIL 275 (478)
Q Consensus 205 ~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~-~~~~ir~~aL~~l~~l~~~~~~~~ 275 (478)
+.+...|++..++.+..+.. + +..- +.++..|. ++.+ +++++...||..+..++++-..-|
T Consensus 12 e~l~~~dw~~ileicD~In~--~----~~~~----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~f 74 (141)
T cd03565 12 GSLQSEDWGLNMEICDIINE--T----EDGP----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRF 74 (141)
T ss_pred cCCCCcCHHHHHHHHHHHhC--C----CCcH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHH
Confidence 45667788888887776653 1 1111 12334444 3433 588898989999999888644333
No 352
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.55 E-value=3.1e+02 Score=28.09 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcC
Q 011744 330 KAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLD 395 (478)
Q Consensus 330 ~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~ 395 (478)
...+.|..++.....-......+++.+++.++..++.-+...+-.+.-+++-.+.-++..+-++|+
T Consensus 26 ~~~k~lkkiv~~sdee~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~lii~n~~efLe 91 (661)
T KOG2374|consen 26 RLLKALKKIVRYSDEEVRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLIIENLDEFLE 91 (661)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHHHhCHHHHHH
Confidence 334444444443334456677888999999998888888887777776777777777777766664
No 353
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=1.2e+03 Score=25.74 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCChHHHHH-------------HHHHHHHHHhhcccc-cccccHHHHHHHhhc-----C---CChhhHHHHHHHHHHHhh
Q 011744 92 DDDPYVRKT-------------AAICVAKLYDINAEL-VEDRGFLESLKDLIS-----D---NNPMVVANAVAALAEIEE 149 (478)
Q Consensus 92 ~~~~~VRk~-------------A~~al~~i~~~~p~~-~~~~~~~~~l~~lL~-----d---~~~~V~~~a~~~l~~i~~ 149 (478)
|++.|+||. |+.++..+..+-++. +. +..+.+...|. + .++.-..+|+..+..+..
T Consensus 368 Dp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~Tfq--giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s 445 (970)
T COG5656 368 DPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQ--GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS 445 (970)
T ss_pred CHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhh--hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH
Confidence 467788884 444455554455543 44 45566666552 2 223334566666665543
Q ss_pred --hCCCCcccccHHHHHH-----HHHhcccCChhhHHHHHHHHhhccC--CChHHHHHHHHHhhhhhcCCChHHHHHHHH
Q 011744 150 --NSSRPIFEITSHTLSK-----LLTALNECTEWGQVFILDALSRYKA--ADAREAENIVERVTPRLQHANCAVVLSAVK 220 (478)
Q Consensus 150 --~~~~~~~~~~~~~~~~-----Ll~~l~~~~~~~q~~ll~~l~~~~~--~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~ 220 (478)
...+ .+.+.+.+ ++-.+.+.--+++-+...++.++.. ++..-..++.+.+..+++++.-.|..+|+-
T Consensus 446 ~itk~s----p~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAal 521 (970)
T COG5656 446 FITKMS----PAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAAL 521 (970)
T ss_pred HhccCc----hHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence 1111 11222232 2222334455778888888887731 112233456777778888877789999987
Q ss_pred HHHHh
Q 011744 221 MILQQ 225 (478)
Q Consensus 221 ~i~~~ 225 (478)
++--+
T Consensus 522 Alq~f 526 (970)
T COG5656 522 ALQFF 526 (970)
T ss_pred HHHHH
Confidence 76543
No 354
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=20.22 E-value=2.9e+02 Score=29.25 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCChhhh-hHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc
Q 011744 62 IRALAVRTMGCIRVDKI-TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA 113 (478)
Q Consensus 62 vr~~AL~~l~~i~~~e~-~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p 113 (478)
.-..|+.++...-+..+ ...++.-+-++..|.++.||..|+.+|-++.+..|
T Consensus 451 Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 451 LFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred HHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 33456666665543332 34566668888899999999999999999998765
No 355
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=20.18 E-value=3.4e+02 Score=26.27 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=44.3
Q ss_pred CChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcC------CCC
Q 011744 21 ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLK------DDD 94 (478)
Q Consensus 21 ~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~------~~~ 94 (478)
+.+.+|--+.-.+..|+..|+|.-...++++...-.+.+. ++-... +...+. +.+
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~---------------~~~~~n----l~~~Ll~~~~~~~~d 110 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNS---------------DDPIAN----LLTALLDYDSDLSLD 110 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS-----------------SSSS-----HHHHHT------SS-
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcc---------------cchhhH----HHHHHHHhhccccCC
Confidence 5778888877778888888888776667666555554443 000001 222222 568
Q ss_pred hHHHHHHHHHHHHHHhhccc
Q 011744 95 PYVRKTAAICVAKLYDINAE 114 (478)
Q Consensus 95 ~~VRk~A~~al~~i~~~~p~ 114 (478)
||--..|+..+.++.+.+|+
T Consensus 111 py~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 111 PYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 88888899999988876664
No 356
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=20.08 E-value=4.5e+02 Score=20.85 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC--CChhhHHHHHHHHHHHhhh
Q 011744 96 YVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD--NNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 96 ~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d--~~~~V~~~a~~~l~~i~~~ 150 (478)
.-||.|+.++..+.+.....+. .+.|.+..+|.. ..+..+..|+.++..+...
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~i~--~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKHIS--SALPQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 4578888888888776555444 345555554432 3455777777777665443
Done!