Query 011744
Match_columns 478
No_of_seqs 179 out of 1628
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 100.0 4E-72 1.4E-76 590.7 49.0 469 1-470 41-511 (591)
2 2vgl_A Adaptor protein complex 100.0 1.1E-71 3.9E-76 587.3 33.9 462 1-471 66-568 (621)
3 1w63_A Adapter-related protein 100.0 2.8E-66 9.6E-71 548.0 32.7 457 1-470 62-557 (618)
4 3tjz_B Coatomer subunit gamma; 100.0 1.7E-45 5.7E-50 355.8 13.4 289 1-306 55-354 (355)
5 1b3u_A Protein (protein phosph 99.9 1.8E-19 6.3E-24 189.0 28.2 426 17-449 134-585 (588)
6 1b3u_A Protein (protein phosph 99.9 4.3E-19 1.5E-23 186.2 30.4 444 8-455 86-552 (588)
7 4fdd_A Transportin-1; heat rep 99.8 1.4E-17 4.9E-22 182.7 34.0 400 17-455 21-475 (852)
8 4fdd_A Transportin-1; heat rep 99.8 7.3E-16 2.5E-20 169.1 39.1 402 12-450 51-511 (852)
9 2vgl_B AP-2 complex subunit be 99.8 4.2E-17 1.4E-21 171.4 25.1 420 12-453 16-459 (591)
10 2jdq_A Importin alpha-1 subuni 99.8 7.5E-16 2.6E-20 156.1 31.2 329 11-341 22-391 (450)
11 2bpt_A Importin beta-1 subunit 99.7 1.9E-14 6.6E-19 157.7 43.2 444 12-464 7-541 (861)
12 2jdq_A Importin alpha-1 subuni 99.7 2.4E-16 8.1E-21 159.8 24.3 331 46-378 20-391 (450)
13 1wa5_B Importin alpha subunit; 99.7 1.5E-15 5.2E-20 157.5 30.4 332 7-340 85-457 (530)
14 1w63_A Adapter-related protein 99.7 5.4E-17 1.9E-21 171.2 19.6 393 48-455 36-455 (618)
15 1u6g_C TIP120 protein, CAND1; 99.7 9.4E-15 3.2E-19 166.4 37.4 444 8-456 5-603 (1230)
16 4b8j_A Importin subunit alpha- 99.7 5.5E-15 1.9E-19 153.2 31.8 375 9-415 74-496 (528)
17 1wa5_B Importin alpha subunit; 99.7 2E-15 7E-20 156.6 24.5 330 47-378 88-458 (530)
18 2bpt_A Importin beta-1 subunit 99.7 1.1E-13 3.9E-18 151.5 39.4 458 6-467 131-726 (861)
19 1qgr_A Protein (importin beta 99.7 2.6E-13 8.8E-18 149.0 40.3 458 6-467 125-737 (876)
20 3now_A UNC-45 protein, SD10334 99.7 4.5E-14 1.5E-18 150.2 32.0 394 10-406 291-773 (810)
21 1qgr_A Protein (importin beta 99.7 5.4E-13 1.8E-17 146.5 39.2 441 12-464 4-549 (876)
22 3now_A UNC-45 protein, SD10334 99.7 3.1E-13 1.1E-17 143.7 35.6 429 17-450 255-781 (810)
23 1ibr_B P95, importin beta-1 su 99.7 1.8E-14 6E-19 146.3 24.4 357 49-417 4-439 (462)
24 3ul1_B Importin subunit alpha- 99.6 2E-13 6.9E-18 140.7 31.1 366 47-415 58-478 (510)
25 4b8j_A Importin subunit alpha- 99.6 8E-14 2.7E-18 144.5 28.2 370 82-454 75-499 (528)
26 2z6g_A B-catenin; FULL-length, 99.6 1.4E-13 5E-18 148.8 28.3 434 10-450 116-621 (780)
27 1u6g_C TIP120 protein, CAND1; 99.6 3.7E-13 1.3E-17 153.3 33.0 445 7-455 46-683 (1230)
28 1jdh_A Beta-catenin; beta-cate 99.6 3.5E-13 1.2E-17 139.4 30.1 438 5-449 12-528 (529)
29 2z6g_A B-catenin; FULL-length, 99.6 2.4E-14 8.4E-19 154.9 21.9 365 48-415 117-518 (780)
30 3ul1_B Importin subunit alpha- 99.6 1.3E-12 4.5E-17 134.6 33.6 330 9-340 57-430 (510)
31 1oyz_A Hypothetical protein YI 99.6 2.6E-14 8.9E-19 135.5 18.7 251 47-372 24-277 (280)
32 3tpo_A Importin subunit alpha- 99.6 4.1E-13 1.4E-17 139.2 29.3 365 47-414 77-496 (529)
33 2z6h_A Catenin beta-1, beta-ca 99.6 5.2E-13 1.8E-17 141.8 29.1 400 47-451 15-486 (644)
34 1jdh_A Beta-catenin; beta-cate 99.6 4.9E-13 1.7E-17 138.2 28.0 403 42-450 13-488 (529)
35 3tpo_A Importin subunit alpha- 99.6 3.6E-12 1.2E-16 132.0 32.4 331 8-340 75-449 (529)
36 2z6h_A Catenin beta-1, beta-ca 99.6 1E-11 3.5E-16 131.8 36.3 443 5-454 9-530 (644)
37 1ibr_B P95, importin beta-1 su 99.5 2.9E-12 1E-16 129.8 27.8 361 12-379 4-439 (462)
38 2vgl_A Adaptor protein complex 99.5 1.2E-11 4E-16 130.2 32.5 373 24-413 58-472 (621)
39 1oyz_A Hypothetical protein YI 99.5 1.2E-12 4.2E-17 123.9 22.4 192 11-224 25-218 (280)
40 3ltm_A Alpha-REP4; protein eng 99.4 4.2E-12 1.4E-16 114.9 17.9 184 48-271 21-205 (211)
41 3ltj_A Alpharep-4; protein eng 99.4 1.2E-11 4.2E-16 110.9 18.5 181 48-268 16-197 (201)
42 3ltj_A Alpharep-4; protein eng 99.4 2.4E-11 8.3E-16 108.9 18.5 184 8-225 13-196 (201)
43 3ltm_A Alpha-REP4; protein eng 99.4 3.8E-11 1.3E-15 108.5 18.1 185 8-226 18-202 (211)
44 4hxt_A De novo protein OR329; 99.3 1.5E-10 5E-15 107.2 21.8 224 48-273 4-245 (252)
45 1xm9_A Plakophilin 1; armadill 99.2 8.3E-10 2.8E-14 112.0 23.3 331 83-416 4-450 (457)
46 4db8_A Armadillo-repeat protei 99.2 2.2E-10 7.5E-15 106.3 15.8 220 6-225 9-249 (252)
47 4db8_A Armadillo-repeat protei 99.2 2.1E-10 7.1E-15 106.5 15.2 219 48-268 14-250 (252)
48 4hxt_A De novo protein OR329; 99.2 1.3E-09 4.6E-14 100.6 20.0 218 10-227 3-241 (252)
49 3tjz_B Coatomer subunit gamma; 99.2 9.4E-10 3.2E-14 106.2 18.2 271 50-373 72-349 (355)
50 1wa5_C Importin alpha RE-expor 99.2 1.4E-07 4.8E-12 104.5 37.5 409 13-451 9-525 (960)
51 3l6x_A Catenin delta-1; cateni 99.1 2.3E-08 7.9E-13 103.0 26.9 334 80-416 47-477 (584)
52 4ady_A RPN2, 26S proteasome re 99.1 1.5E-07 5E-12 100.7 32.4 284 48-359 394-699 (963)
53 3nmz_A APC variant protein; pr 99.1 2.3E-08 8E-13 100.4 24.1 333 47-383 33-456 (458)
54 4db6_A Armadillo repeat protei 99.1 2.9E-09 9.9E-14 95.8 15.4 148 3-150 6-168 (210)
55 2x19_B Importin-13; nuclear tr 99.0 1.7E-07 5.7E-12 104.0 30.4 433 13-455 28-560 (963)
56 2qk2_A LP04448P; mini spindles 99.0 8.1E-09 2.8E-13 95.3 16.6 200 78-280 12-217 (242)
57 4db6_A Armadillo repeat protei 99.0 1.5E-08 5.2E-13 91.0 16.9 188 80-269 11-209 (210)
58 3l6x_A Catenin delta-1; cateni 99.0 1.9E-07 6.5E-12 96.1 25.3 330 47-377 49-476 (584)
59 1xm9_A Plakophilin 1; armadill 98.9 4.3E-07 1.5E-11 91.9 26.6 294 10-307 45-451 (457)
60 2qk1_A Protein STU2; STU2P, XM 98.9 5.9E-08 2E-12 89.8 17.5 201 81-281 16-233 (249)
61 2x1g_F Cadmus; transport prote 98.8 4E-07 1.4E-11 101.0 23.1 436 15-467 13-587 (971)
62 2db0_A 253AA long hypothetical 98.8 1.1E-06 3.7E-11 74.4 18.7 209 120-339 32-245 (253)
63 1te4_A Conserved protein MTH18 98.8 2.3E-09 7.9E-14 89.0 2.6 117 11-146 14-130 (131)
64 3b2a_A TON_1937, putative unch 98.8 2.5E-07 8.4E-12 81.7 15.4 179 120-306 33-219 (265)
65 3nmw_A APC variant protein; AR 98.7 4.2E-07 1.4E-11 88.4 18.7 217 58-276 96-341 (354)
66 3opb_A SWI5-dependent HO expre 98.7 1.8E-06 6.2E-11 90.6 24.5 315 60-377 308-728 (778)
67 1te4_A Conserved protein MTH18 98.7 9.9E-09 3.4E-13 85.1 5.2 117 48-187 14-130 (131)
68 4ady_A RPN2, 26S proteasome re 98.7 2.1E-05 7.2E-10 84.3 30.9 329 90-450 367-718 (963)
69 1xqr_A HSPBP1 protein; armadil 98.7 6.5E-07 2.2E-11 84.8 17.4 174 61-272 55-241 (296)
70 3nmz_A APC variant protein; pr 98.7 8.1E-07 2.8E-11 89.2 18.3 216 58-275 212-456 (458)
71 3opb_A SWI5-dependent HO expre 98.6 6.3E-05 2.2E-09 79.0 32.2 382 28-414 231-730 (778)
72 3nmw_A APC variant protein; AR 98.6 3.6E-06 1.2E-10 81.8 21.3 253 99-384 50-341 (354)
73 2db0_A 253AA long hypothetical 98.6 2.8E-06 9.7E-11 71.9 16.9 210 242-452 33-247 (253)
74 2qk2_A LP04448P; mini spindles 98.6 7E-07 2.4E-11 82.1 14.1 173 203-380 20-208 (242)
75 1xqr_A HSPBP1 protein; armadil 98.6 1.1E-06 3.8E-11 83.1 15.6 147 4-151 23-198 (296)
76 3ibv_A Exportin-T; karyopherin 98.5 0.00038 1.3E-08 76.8 35.1 439 19-466 18-580 (980)
77 3m1i_C Exportin-1; heat repeat 98.5 5E-05 1.7E-09 84.9 28.3 434 13-454 20-572 (1049)
78 1wa5_C Importin alpha RE-expor 98.4 0.00021 7.1E-09 79.1 31.0 244 22-271 374-672 (960)
79 2qk1_A Protein STU2; STU2P, XM 98.4 1E-05 3.5E-10 74.6 16.6 179 286-465 26-234 (249)
80 2x19_B Importin-13; nuclear tr 98.4 0.0017 6E-08 71.6 37.0 325 46-379 445-848 (963)
81 3b2a_A TON_1937, putative unch 98.3 3E-05 1E-09 68.5 16.9 199 243-473 35-240 (265)
82 2x1g_F Cadmus; transport prote 98.3 0.0015 5.2E-08 72.2 33.7 169 96-271 436-617 (971)
83 3a6p_A Exportin-5; exportin-5, 98.1 0.0042 1.4E-07 70.2 33.2 456 5-469 4-630 (1204)
84 3m1i_C Exportin-1; heat repeat 97.9 0.013 4.3E-07 65.4 32.8 164 291-455 428-622 (1049)
85 4hat_C Exportin-1; heat repeat 97.9 0.0077 2.6E-07 66.6 29.8 428 12-454 19-572 (1023)
86 4ffb_C Protein STU2; tubulin f 97.9 0.00015 5.2E-09 67.9 13.6 193 1-230 1-215 (278)
87 4ffb_C Protein STU2; tubulin f 97.8 0.00077 2.6E-08 63.0 16.6 184 86-270 14-213 (278)
88 3grl_A General vesicular trans 97.8 0.018 6.3E-07 59.0 27.2 134 16-151 29-197 (651)
89 3u0r_A Apoptosis inhibitor 5; 97.7 0.054 1.8E-06 53.3 30.3 133 11-149 31-163 (507)
90 3grl_A General vesicular trans 97.7 0.022 7.4E-07 58.5 25.7 295 92-390 33-407 (651)
91 1lrv_A LRV, leucine-rich repea 97.6 0.00011 3.6E-09 67.2 8.0 184 53-335 57-241 (244)
92 4hat_C Exportin-1; heat repeat 97.6 0.11 3.7E-06 57.4 32.8 365 81-457 194-624 (1023)
93 3gjx_A Exportin-1; transport, 97.6 0.083 2.8E-06 58.4 30.8 450 10-471 29-622 (1073)
94 3u0r_A Apoptosis inhibitor 5; 97.5 0.016 5.4E-07 57.0 21.2 150 249-401 37-193 (507)
95 3ibv_A Exportin-T; karyopherin 97.5 0.047 1.6E-06 60.1 27.8 210 49-271 10-262 (980)
96 2iw3_A Elongation factor 3A; a 97.5 0.013 4.4E-07 63.7 22.5 219 47-270 96-325 (986)
97 3tt9_A Plakophilin-2; cell adh 97.4 0.0029 1E-07 57.1 14.1 168 81-250 8-203 (233)
98 3tt9_A Plakophilin-2; cell adh 97.4 0.0092 3.1E-07 53.9 17.1 139 200-340 10-180 (233)
99 3l9t_A Putative uncharacterize 97.3 0.0095 3.2E-07 53.1 15.8 116 18-144 46-163 (240)
100 2iw3_A Elongation factor 3A; a 97.3 0.18 6.1E-06 54.9 28.5 245 80-338 53-322 (986)
101 1lrv_A LRV, leucine-rich repea 97.3 0.00018 6.1E-09 65.7 4.3 186 86-372 55-241 (244)
102 2of3_A ZYG-9; multifunctional 97.2 0.0092 3.2E-07 54.7 15.5 186 80-278 45-245 (266)
103 2of3_A ZYG-9; multifunctional 97.2 0.0077 2.6E-07 55.3 14.5 162 248-412 54-233 (266)
104 3a6p_A Exportin-5; exportin-5, 97.2 0.48 1.6E-05 53.5 32.5 277 48-332 14-372 (1204)
105 3gs3_A Symplekin, LD45768P; he 97.2 0.072 2.5E-06 48.6 20.8 97 50-149 20-119 (257)
106 1ho8_A Vacuolar ATP synthase s 97.0 0.23 7.9E-06 49.1 23.6 194 255-452 243-477 (480)
107 3l9t_A Putative uncharacterize 96.7 0.01 3.6E-07 52.8 10.5 141 6-152 68-210 (240)
108 1lsh_A Lipovitellin (LV-1N, LV 96.7 0.011 3.7E-07 65.7 13.1 122 21-147 407-541 (1056)
109 3o2t_A Symplekin; heat repeat, 96.6 0.046 1.6E-06 52.8 14.9 132 62-224 41-180 (386)
110 3oc3_A Helicase MOT1, MOT1; re 96.1 0.03 1E-06 56.0 10.8 235 12-265 177-432 (800)
111 3gjx_A Exportin-1; transport, 96.1 2.3 8E-05 46.9 30.9 161 295-456 461-649 (1073)
112 3gs3_A Symplekin, LD45768P; he 95.8 0.52 1.8E-05 42.8 16.7 123 26-148 31-172 (257)
113 3o2t_A Symplekin; heat repeat, 95.6 0.61 2.1E-05 45.0 17.4 124 26-149 41-183 (386)
114 4gmo_A Putative uncharacterize 95.3 0.12 3.9E-06 54.7 12.4 68 82-151 36-107 (684)
115 4gmo_A Putative uncharacterize 93.7 0.54 1.8E-05 49.6 12.8 62 50-111 38-106 (684)
116 1lsh_A Lipovitellin (LV-1N, LV 93.7 4 0.00014 45.2 20.2 133 74-225 388-541 (1056)
117 3oc3_A Helicase MOT1, MOT1; re 93.5 0.62 2.1E-05 46.8 11.6 135 13-148 267-403 (800)
118 3ldz_A STAM-1, signal transduc 90.3 1.3 4.5E-05 36.1 8.6 81 29-109 25-113 (140)
119 1x5b_A Signal transducing adap 88.9 2.2 7.5E-05 35.7 9.0 81 29-109 35-124 (163)
120 2b6c_A Hypothetical protein EF 87.6 3.6 0.00012 36.3 10.1 130 14-152 60-191 (220)
121 2b6c_A Hypothetical protein EF 87.5 1.5 5.2E-05 38.8 7.6 69 49-117 127-195 (220)
122 3dad_A FH1/FH2 domain-containi 86.8 15 0.00053 34.3 14.1 138 12-150 121-287 (339)
123 3dad_A FH1/FH2 domain-containi 86.3 19 0.00066 33.7 14.5 107 206-317 126-245 (339)
124 3zyq_A Hepatocyte growth facto 84.6 6.2 0.00021 34.9 10.1 94 13-110 12-118 (226)
125 3g2s_A C-terminal fragment of 84.6 15 0.00052 30.0 11.6 97 17-113 19-129 (149)
126 1mhq_A ADP-ribosylation factor 83.7 4.3 0.00015 33.3 7.9 81 30-110 22-116 (148)
127 1t06_A Hypothetical protein; s 83.4 3.2 0.00011 37.1 7.7 128 13-153 52-184 (235)
128 1juq_A ADP-ribosylation factor 82.5 4.8 0.00016 33.9 8.0 83 29-111 33-129 (171)
129 1vsy_5 Proteasome activator BL 81.9 4.5 0.00015 44.4 9.5 108 41-149 838-966 (997)
130 3jxy_A Alkylpurine DNA glycosy 81.3 2.3 7.8E-05 38.0 5.9 136 13-159 65-205 (232)
131 3jxy_A Alkylpurine DNA glycosy 79.6 8.4 0.00029 34.2 9.1 120 56-190 71-198 (232)
132 1vsy_5 Proteasome activator BL 79.3 3.1 0.00011 45.6 7.1 96 16-112 767-875 (997)
133 1dvp_A HRS, hepatocyte growth 77.5 12 0.00039 33.0 9.2 74 30-107 26-112 (220)
134 1elk_A Target of MYB1; superhe 71.9 32 0.0011 28.3 10.0 105 4-108 10-128 (157)
135 1t06_A Hypothetical protein; s 71.4 18 0.00062 32.1 8.9 20 123-142 111-130 (235)
136 3ldz_A STAM-1, signal transduc 70.5 40 0.0014 27.1 12.2 62 205-276 16-78 (140)
137 3g2s_A C-terminal fragment of 67.9 48 0.0016 27.0 13.0 63 204-276 21-84 (149)
138 4atg_A TAF6; transcription, TF 65.2 65 0.0022 27.5 14.4 141 4-149 6-162 (196)
139 1vsy_4 Proteasome activator BL 64.5 34 0.0012 36.4 10.7 110 76-186 334-451 (799)
140 1upk_A MO25 protein; transfera 62.6 1E+02 0.0035 28.8 19.0 177 81-269 78-283 (341)
141 3ut4_A CTHE_2751, putative unc 59.0 57 0.002 26.0 8.5 68 66-143 17-84 (134)
142 3fga_B Serine/threonine-protei 58.5 1.3E+02 0.0045 28.9 14.9 159 313-471 131-300 (403)
143 1x5b_A Signal transducing adap 54.4 91 0.0031 25.7 12.7 62 205-276 26-88 (163)
144 2npp_B PP2A, B subunit, serine 53.0 1.7E+02 0.0059 28.5 15.2 159 313-471 164-333 (449)
145 4atg_A TAF6; transcription, TF 52.3 1.1E+02 0.0038 26.1 11.0 73 343-415 82-162 (196)
146 1ho8_A Vacuolar ATP synthase s 51.9 18 0.0006 35.8 5.4 69 82-150 396-477 (480)
147 2jak_A Serine/threonine-protei 49.8 1.8E+02 0.0062 27.8 13.5 159 313-471 176-345 (392)
148 3zyq_A Hepatocyte growth facto 47.8 1.4E+02 0.0048 26.0 10.6 69 198-276 11-81 (226)
149 3qml_C Protein SLS1, nucleotid 45.6 1.5E+02 0.0052 27.2 10.2 27 91-117 80-106 (315)
150 3s4w_B Protein FACD2, fanconi 45.2 3.8E+02 0.013 30.2 22.7 59 347-405 437-498 (1323)
151 1juq_A ADP-ribosylation factor 44.3 1.4E+02 0.0047 24.8 12.6 61 205-275 24-85 (171)
152 3qml_C Protein SLS1, nucleotid 44.0 86 0.0029 28.9 8.3 105 19-148 80-188 (315)
153 4flb_A Regulation of nuclear P 39.9 1.3E+02 0.0045 23.4 8.7 36 290-328 22-57 (132)
154 1mhq_A ADP-ribosylation factor 37.2 1.6E+02 0.0056 23.7 14.6 61 205-275 12-73 (148)
155 2fv2_A RCD1 required for cell 33.4 2.6E+02 0.009 25.0 11.3 27 290-317 116-142 (268)
156 1upk_A MO25 protein; transfera 32.2 3.1E+02 0.011 25.5 18.9 63 315-377 168-238 (341)
157 3ut4_A CTHE_2751, putative unc 32.1 1.7E+02 0.0057 23.3 7.2 41 296-337 17-57 (134)
158 3rru_A TOM1L1 protein; structu 31.9 1.2E+02 0.004 24.7 6.6 100 29-129 36-148 (152)
159 1dvp_A HRS, hepatocyte growth 28.3 2.8E+02 0.0097 23.8 11.0 59 205-273 16-75 (220)
160 1z5h_A Tricorn protease intera 28.0 5.5E+02 0.019 27.0 12.8 127 199-336 529-660 (780)
161 2jby_A M11L protein; apoptosis 25.3 1.4E+02 0.0049 23.1 5.4 31 120-150 76-106 (145)
162 1vdy_A Hypothetical protein (R 24.7 1.2E+02 0.0043 24.2 5.4 38 77-114 45-82 (140)
163 3fga_B Serine/threonine-protei 22.6 5.1E+02 0.017 24.7 17.1 32 82-113 130-161 (403)
164 1h2v_C 80 kDa nuclear CAP bind 22.5 6.9E+02 0.024 26.2 12.4 81 292-373 8-90 (771)
165 2fv2_A RCD1 required for cell 22.2 4.2E+02 0.014 23.6 13.7 103 48-152 5-134 (268)
166 1hu3_A EIF4GII; heat repeat, t 22.1 4.1E+02 0.014 23.4 14.4 48 405-452 148-199 (260)
167 2qc7_A ERP31, ERP28, endoplasm 20.4 2.2E+02 0.0074 25.0 6.7 60 317-377 135-198 (240)
168 4f52_E Glomulin; cullin-ring E 20.3 4.7E+02 0.016 26.5 10.0 94 49-146 320-428 (596)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=4e-72 Score=590.69 Aligned_cols=469 Identities=75% Similarity=1.175 Sum_probs=441.9
Q ss_pred CCCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhH
Q 011744 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (478)
Q Consensus 1 ~~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~ 80 (478)
|++|+|+++++++++++++|+++..||+||++++.+++.+||.+.+++|+++||++|+||.+|++|++++|+++++++.+
T Consensus 41 ~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~ 120 (591)
T 2vgl_B 41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE 120 (591)
T ss_dssp HHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHH
T ss_pred HHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCC-ccccc
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEIT 159 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~-~~~~~ 159 (478)
.+.|.+.+++.|++|+|||+|+.|+.++++.+|+.+++.+|++.+.++|.|+|++|+.+|+.++++++..++.. .+.+.
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 99999999999999999999999999999999998876679999999999999999999999999999887654 46677
Q ss_pred HHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhc-CChHHHHHH
Q 011744 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNL 238 (478)
Q Consensus 160 ~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~-~~~~~~~~~ 238 (478)
++.+.+|++.+.+++||+|++++++++.|++.++.+...+++.+.+++++.|++|+++|+++++.+.+.+ ++++.++.+
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~ 280 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 7889999999999999999999999999999888888899999999999999999999999999975433 245667666
Q ss_pred HHHhhhHHHHhhcCChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 011744 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 318 (478)
Q Consensus 239 ~~~~~~~l~~ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~ 318 (478)
..++.++|++++++++|+||+|++++..++..+|+.+.+|++.|+|+.+||.+||++|+++|+.+++++|++.|+++|.+
T Consensus 281 ~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~ 360 (591)
T 2vgl_B 281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKE 360 (591)
T ss_dssp HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHH
Confidence 67788888888889999999999999999999999999999888888888899999999999999999999999999999
Q ss_pred hhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCC
Q 011744 319 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 398 (478)
Q Consensus 319 ~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~ 398 (478)
|+++.|.++|++++++|+.++.+|++..+|+++++++++++++++++.++|.+++++++++|+.+++++..|++.++++.
T Consensus 361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~ 440 (591)
T 2vgl_B 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD 440 (591)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhHHHHHHHHhhcccCccCCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHH
Q 011744 399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLKYYT 470 (478)
Q Consensus 399 ~~~~~~~~~~ilGE~~~~~~~~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~~ 470 (478)
+|+++.+++|++||||+.+++++++++.++++|..+++.||.++++|++|++.++|++ .+++++++|+.+.
T Consensus 441 ~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~ 511 (591)
T 2vgl_B 441 EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLAT 511 (591)
T ss_dssp SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999986 6799999999875
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=1.1e-71 Score=587.33 Aligned_cols=462 Identities=19% Similarity=0.292 Sum_probs=403.0
Q ss_pred CCCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhH
Q 011744 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (478)
Q Consensus 1 ~~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~ 80 (478)
|++|+|++|+|++++++++|+++..||+||+|++.+++.+||.++|++|+++||++|+||.+|++||+++|+++++++++
T Consensus 66 ~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~ 145 (621)
T 2vgl_A 66 FLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAE 145 (621)
T ss_dssp HHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc--CCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccc
Q 011744 81 YLCDPLQRCL--KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (478)
Q Consensus 81 ~l~~~i~~~l--~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~ 158 (478)
.+.|.|.+++ .|++|||||+|+.|+.++|+.+|+.++..+|.+.+.++|+|+||+|+.+|+.++.++++.++..+..+
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~ 225 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTS 225 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHH
Confidence 9999999999 99999999999999999999999999856799999999999999999999999999998765322233
Q ss_pred cHHHHHHHHHhcc--cC-----------ChhhHHHHHHHHhhccCCC-hHHHHHH---HHHhhh---------hhcCCCh
Q 011744 159 TSHTLSKLLTALN--EC-----------TEWGQVFILDALSRYKAAD-AREAENI---VERVTP---------RLQHANC 212 (478)
Q Consensus 159 ~~~~~~~Ll~~l~--~~-----------~~~~q~~ll~~l~~~~~~~-~~~~~~~---l~~l~~---------~l~~~~~ 212 (478)
++..++.|.+.+. ++ +||+|++++++++.|++.+ ++....+ +..+.. .+++.|.
T Consensus 226 ~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~ 305 (621)
T 2vgl_A 226 VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNA 305 (621)
T ss_dssp HHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccch
Confidence 3333333332221 12 7999999999999999854 4433333 333332 2233444
Q ss_pred --HHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc--cchhhcccee-eecc
Q 011744 213 --AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--TILAHEIKVF-FCKY 286 (478)
Q Consensus 213 --~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~--~~~~~~~~~~-~~l~ 286 (478)
+|++||++++..+. ++++..+ .+++.|..+++ +++|+||+||+++..++..+| +.+++|...| .|+.
T Consensus 306 ~~aVl~ea~~~i~~l~---~~~~~~~----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~ 378 (621)
T 2vgl_A 306 KNAVLFEAISLIIHHD---SEPNLLV----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALK 378 (621)
T ss_dssp HHHHHHHHHHHHHHHC---CCHHHHH----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC---CcHHHHH----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhc
Confidence 99999999999874 3455443 46677888885 899999999999999999886 6788887744 5777
Q ss_pred -CCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHH
Q 011744 287 -NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVV 365 (478)
Q Consensus 287 -~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~ 365 (478)
++|.+||++|+++|+.+++++|++.|+.+|.+|+.+.|.++|++++.+|+.++++|+++.+|++++++++++.+|+++.
T Consensus 379 ~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~ 458 (621)
T 2vgl_A 379 TERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVS 458 (621)
T ss_dssp TCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSC
T ss_pred cCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccch
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhh-HHHHHHHHhhcccCccCC-----HHHHHHHHhhcCCCCCHHHH
Q 011744 366 QEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPE-AKASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQ 439 (478)
Q Consensus 366 ~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~-~~~~~~~ilGE~~~~~~~-----~~~~l~~l~~~~~~~~~~vk 439 (478)
.++|..+.+++.++|+.+++++..|++.+++..... ..+.++|++||||+.+++ |.++++.+.++|..+++.||
T Consensus 459 ~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~ 538 (621)
T 2vgl_A 459 EEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTR 538 (621)
T ss_dssp SHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHH
Confidence 999999999999999999999999999998654333 356778999999998764 56999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Q 011744 440 LQLLTATVKLFLKKPTEGPQQMIQVTLKYYTC 471 (478)
Q Consensus 440 ~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~~~ 471 (478)
+++|+|++|++.++|+ .++.++++|+.|+.
T Consensus 539 ~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~ 568 (621)
T 2vgl_A 539 ALLLSTYIKFVNLFPE--VKATIQDVLRSDSQ 568 (621)
T ss_dssp HHHHHHHHHHHHHCGG--GHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHHHChH--HHHHHHHHHHHHhc
Confidence 9999999999999986 78999999988875
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.8e-66 Score=547.98 Aligned_cols=457 Identities=20% Similarity=0.288 Sum_probs=393.3
Q ss_pred CCCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhH
Q 011744 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (478)
Q Consensus 1 ~~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~ 80 (478)
|++|||++|++++++++++|++++.||+||+|++.+++.+||++++++|+++||++|+||.+|++|+++||+++++++++
T Consensus 62 ~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~ 141 (618)
T 1w63_A 62 HMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCR 141 (618)
T ss_dssp HHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHH
T ss_pred HHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccH
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~ 160 (478)
.+.+.|.+++.|++|+|||+|+.|++++++.+|+.++ +|.+.+.+++.|+|++|+.+|+.++.+++..++.. ...+.
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~--~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~ 218 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME--MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFR 218 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG--GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH--HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHH
Confidence 9999999999999999999999999999999999887 69999999999999999999999999998654320 01111
Q ss_pred HHHHHHHHhcc---------------cCChhhHHHHHHHHhhccCCChHHHHH---HHHHhhh---hhcCCChHHHHHHH
Q 011744 161 HTLSKLLTALN---------------ECTEWGQVFILDALSRYKAADAREAEN---IVERVTP---RLQHANCAVVLSAV 219 (478)
Q Consensus 161 ~~~~~Ll~~l~---------------~~~~~~q~~ll~~l~~~~~~~~~~~~~---~l~~l~~---~l~~~~~~V~~ea~ 219 (478)
+.++.+++.|. .++||+|+.++++|+.+++.+++.... ++..+.. ..++.+++|+++|+
T Consensus 219 ~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~ 298 (618)
T 1w63_A 219 KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETV 298 (618)
T ss_dssp TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 22333333332 258999999999999999877654433 4444432 23455679999999
Q ss_pred HHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccc-eeeeccCCChhHHHHHH
Q 011744 220 KMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKL 297 (478)
Q Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~-~~~~l~~dd~~ir~~al 297 (478)
++++.+. ++++.. ..+++.|..+++ +++|+||+||.+|..++..+|+.+++|.. .+.|+.++|.+||++|+
T Consensus 299 ~~i~~l~---~~~~l~----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~al 371 (618)
T 1w63_A 299 LTIMDIK---SESGLR----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAM 371 (618)
T ss_dssp HHHHHSC---CCHHHH----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHhcC---CCHHHH----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 9999863 233332 245677777775 79999999999999999999999999975 66888999999999999
Q ss_pred HHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 011744 298 EIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (478)
Q Consensus 298 ~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~ 377 (478)
++|+.+++++|++.|+++|.+|+.+.|.++|++++.+|+.++.+|+++..|++++++++++.+++++..++|..+++++.
T Consensus 372 elL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~ 451 (618)
T 1w63_A 372 ELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT 451 (618)
T ss_dssp HHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcchHHHHHHHHhhcCC-CChhhHHHHHHHHhhcccCccCC------------HH---HHHHHHhhcCCCCCHHHHHH
Q 011744 378 RYPNTYESIIATLCESLDT-LDEPEAKASMIWIIGEYAERIDN------------AD---ELLESFLESFPEEPAQVQLQ 441 (478)
Q Consensus 378 ~~~~~~~~~i~~L~~~l~~-~~~~~~~~~~~~ilGE~~~~~~~------------~~---~~l~~l~~~~~~~~~~vk~~ 441 (478)
++|+.+++++..|++.+++ +......++++|++||||+.+.+ |. ++++.+++.| .+++.||++
T Consensus 452 ~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~ 530 (618)
T 1w63_A 452 NSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGY 530 (618)
T ss_dssp HSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHH
T ss_pred cChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 9999999999999998874 33344456799999999976532 33 4555566666 789999999
Q ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHHH
Q 011744 442 LLTATVKLFLKKPTEGPQQMIQVTLKYYT 470 (478)
Q Consensus 442 il~a~~Kl~~~~~~~~~~~~~~~~l~~~~ 470 (478)
+++|++|++.++|+ .++.++.+|+.+.
T Consensus 531 ~lta~~Kl~~~~~~--~~~~l~~~L~~~~ 557 (618)
T 1w63_A 531 ALTAIMKLSTRFTC--TVNRIKKVVSIYG 557 (618)
T ss_dssp HHHHHHHHHTTCSS--CHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcc--hHHHHHHHHHHhc
Confidence 99999999999997 5899999988764
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=1.7e-45 Score=355.77 Aligned_cols=289 Identities=16% Similarity=0.256 Sum_probs=202.4
Q ss_pred CCCCCC-----chhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCh
Q 011744 1 MTVGKD-----VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV 75 (478)
Q Consensus 1 ~~~G~d-----~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~ 75 (478)
|+.|++ ++++|+.++|+++|+|+++||++|+|+..+++..+| ++|++|+|+||++|+||++|++|||++|+|.+
T Consensus 55 ~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~ 133 (355)
T 3tjz_B 55 INQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD 133 (355)
T ss_dssp HHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC
Confidence 567888 689999999999999999999999999999998544 67999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCc
Q 011744 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (478)
Q Consensus 76 ~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~ 155 (478)
+++++.+.+.+++++.|++|||||+|+.|.+|++..+|+.++ +|++.+.++++|+||+|+.+|+.++.++.+.+.
T Consensus 134 ~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--- 208 (355)
T 3tjz_B 134 STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK--RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--- 208 (355)
T ss_dssp TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---
Confidence 999999999999999999999999999999999999999997 799999999999999999999999999987642
Q ss_pred ccccHHHHHHHHHhcccC---ChhhHHHHHHHHhhccCCC-hHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCC
Q 011744 156 FEITSHTLSKLLTALNEC---TEWGQVFILDALSRYKAAD-AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (478)
Q Consensus 156 ~~~~~~~~~~Ll~~l~~~---~~~~q~~ll~~l~~~~~~~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~ 231 (478)
..+.+++..+.+. +||+|+.++++++.+.+.+ +.+...+++.+.+.++|.+++|+|||+++++.+.+ . +
T Consensus 209 -----~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~-~ 281 (355)
T 3tjz_B 209 -----LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-C-S 281 (355)
T ss_dssp -----HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred -----HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-C-C
Confidence 3566777766553 7999999999999999887 56677899999999999999999999999998632 1 1
Q ss_pred hHHHHHHHHHhhhHHHHhh-cCChhHHHHHHHHHHHHHhhCccchhhccc-eeeeccCCChhHHHHHHHHHHHhcCc
Q 011744 232 TDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASD 306 (478)
Q Consensus 232 ~~~~~~~~~~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~-~~~~l~~dd~~ir~~al~lL~~l~~~ 306 (478)
+.. ...+++.+..++ ++++|+||+||+.+..+.+.+|+.++.|-. +..++.+.+.+|+..|+..|.+.|+|
T Consensus 282 ~~~----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 282 AKE----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp ----------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred HHH----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCC
Confidence 111 134567777777 589999999999999999999999998855 55677788899999999999999876
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.85 E-value=1.8e-19 Score=188.97 Aligned_cols=426 Identities=11% Similarity=0.095 Sum_probs=259.1
Q ss_pred hccCCChhHHHHHHHHHHHhcccCch-HHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----ChhhhhHHHHHHHHhhcC
Q 011744 17 CMQTENLELKKLVYLYLINYAKSQPD-LAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVDKITEYLCDPLQRCLK 91 (478)
Q Consensus 17 l~~s~~~~~Krl~yl~l~~~~~~~~e-~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~e~~~~l~~~i~~~l~ 91 (478)
+..+++...|..+...+..+...-++ ..--+.+.+.+-++++++.+|..|.++++.+ +.+...+.++|.+..++.
T Consensus 134 l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 213 (588)
T 1b3u_A 134 LAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLAS 213 (588)
T ss_dssp HHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHT
T ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhc
Confidence 33444444444444444443333221 1112344455556778888888888877765 333455667777888888
Q ss_pred CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcc
Q 011744 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN 171 (478)
Q Consensus 92 ~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~ 171 (478)
|+++.||+.|+.++..+....|+......+.+.+..++.|+++.|+.+|+.+++.+....+++. .....+..+++.+.
T Consensus 214 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~ 291 (588)
T 1b3u_A 214 DEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMK 291 (588)
T ss_dssp CSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhC
Confidence 8888888888888888776544311112466777777888888888888888887765432111 01123445555556
Q ss_pred cCChhhHHHHHHHHhhccCCCh------HHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhH
Q 011744 172 ECTEWGQVFILDALSRYKAADA------REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (478)
Q Consensus 172 ~~~~~~q~~ll~~l~~~~~~~~------~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (478)
+.++..+....+.+..+...-+ .....+++.+...+++.++.|+..++.++..+.+.++.... ...+.+.
T Consensus 292 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~p~ 367 (588)
T 1b3u_A 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT----IEHLLPL 367 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH----HHHTHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH----HHHHHHH
Confidence 6666666655555554432111 12344666666777888888888888877776543332211 1245566
Q ss_pred HHHhhc-CChhHHHHHHHHHHHHHhhCc-cch-hhcccee-eeccCCChhHHHHHHHHHHHhcC----cccHHHHHHHHH
Q 011744 246 LVTLLS-AEPEIQYVALRNINLIVQRRP-TIL-AHEIKVF-FCKYNDPIYVKMEKLEIMIKLAS----DRNIDQVLLEFK 317 (478)
Q Consensus 246 l~~ll~-~~~~ir~~aL~~l~~l~~~~~-~~~-~~~~~~~-~~l~~dd~~ir~~al~lL~~l~~----~~n~~~Iv~~L~ 317 (478)
+..+++ .++++|..+++++..+....+ +.. ...++.+ ..+.++++.+|..+++.+..++. +...+.+++.+.
T Consensus 368 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 447 (588)
T 1b3u_A 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCM 447 (588)
T ss_dssp HHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 666665 567888888888888876532 111 1112222 12345567888888888877653 222246778888
Q ss_pred HhhhhcCHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCc--chHHHHHHHHhh
Q 011744 318 EYATEVDVDFVRKAVRAIGRCAIKLERA--AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN--TYESIIATLCES 393 (478)
Q Consensus 318 ~~l~~~d~~~r~~~v~~i~~l~~~~~~~--~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~--~~~~~i~~L~~~ 393 (478)
..+.+.+..+|..++.+++.++..+++. ...+++.+.+++.+.+..++..++..++.+....+. ..+.++..+.+.
T Consensus 448 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 527 (588)
T 1b3u_A 448 AWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRM 527 (588)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHG
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Confidence 8888888888888888888888776442 133445555555666677888788777777643221 223456666666
Q ss_pred cCCCChhhHHHHHHHHhhcccCccCC---HHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 011744 394 LDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKL 449 (478)
Q Consensus 394 l~~~~~~~~~~~~~~ilGE~~~~~~~---~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl 449 (478)
+++ .+++++..++|.+|+++..+.. .+.++..+..-..+.+..||.....++.++
T Consensus 528 l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 528 AGD-PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp GGC-SCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred CCC-CCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 665 3577888888888888765533 123333333334566788888877777654
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.85 E-value=4.3e-19 Score=186.16 Aligned_cols=444 Identities=13% Similarity=0.082 Sum_probs=312.2
Q ss_pred hhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchH--HHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC---hhhhhHHH
Q 011744 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDL--AILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKITEYL 82 (478)
Q Consensus 8 ~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~--~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~---~~e~~~~l 82 (478)
..+++.+.+++.+++...|..+--++..+....++. .-...+.+.+-.+++++.+|..|...++.+. .+...+.+
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l 165 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 335556666778889999999999999888765542 1223455555557889999999988777543 34566788
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCC-cccccHH
Q 011744 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSH 161 (478)
Q Consensus 83 ~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~-~~~~~~~ 161 (478)
.|.+.+++.|+++.||+.|+.++.++.+..+.......+.+.+..+++|+++.|+..|+.++..+....++. ....
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--- 242 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL--- 242 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHH---
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHH---
Confidence 888999999999999999999999998765431111257888999999999999999999999988764321 1111
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHhhccCC--ChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHH
Q 011744 162 TLSKLLTALNECTEWGQVFILDALSRYKAA--DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (478)
Q Consensus 162 ~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~ 239 (478)
.++.+.+.+.+.++..+....+.++.+... .......+++.+...+++.++.|+..|+..+..+....+.........
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 322 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH
Confidence 222233333344444555566666554321 111224567777888899999999999999988765443321111122
Q ss_pred HHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc-cchhhc-ccee-eeccCCChhHHHHHHHHHHHhcCcc----cHHH
Q 011744 240 KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP-TILAHE-IKVF-FCKYNDPIYVKMEKLEIMIKLASDR----NIDQ 311 (478)
Q Consensus 240 ~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~-~~~~~~-~~~~-~~l~~dd~~ir~~al~lL~~l~~~~----n~~~ 311 (478)
..+.+.+..+++ +++.+|..++.++..++...+ +.+.++ .+.+ ..+.+++..+|..+++.+..++..- ..+.
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 402 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS 402 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 355666677775 678999999999999876532 222222 2222 2345566899999998887776432 2467
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCc--chHHHH
Q 011744 312 VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA--AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN--TYESII 387 (478)
Q Consensus 312 Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~--~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~--~~~~~i 387 (478)
+++.+...+.+.++.+|..++..++.++..+++. .+..++.++.++.+..+.|+..++..++.+....++ ....++
T Consensus 403 ~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ll 482 (588)
T 1b3u_A 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII 482 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 8888888889999999999999999988765432 245788889999999899999999999998865442 224455
Q ss_pred HHHHhhcCCCChhhHHHHHHHHhhcccCccCC---HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCC
Q 011744 388 ATLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (478)
Q Consensus 388 ~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~---~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~ 455 (478)
..+.+...+ .+..++..++|++|+.+..... .+.++..+.+.+.+.+++||..++.++.+++.....
T Consensus 483 p~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 483 PKVLAMSGD-PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHHHTTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHhhC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 666655544 3567899999999998765432 235666677777788999999999999999876644
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.82 E-value=1.4e-17 Score=182.67 Aligned_cols=400 Identities=16% Similarity=0.184 Sum_probs=276.5
Q ss_pred hccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCh---hhhhH----HHHHHHHhh
Q 011744 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---DKITE----YLCDPLQRC 89 (478)
Q Consensus 17 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~---~e~~~----~l~~~i~~~ 89 (478)
...|+|...|+-+.-.+..+ +.+|+...... .+...+++.++.+|..|.-.+.+.-. ..+-+ .+-+.+.++
T Consensus 21 ~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~-~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~ 98 (852)
T 4fdd_A 21 ESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLI-FVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNN 98 (852)
T ss_dssp HHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHH-HHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTT
T ss_pred HHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHH-HHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 34567778888887777765 44566432222 33344566777888777766665332 12222 345556666
Q ss_pred cCCCChHHHHHHHHHHHHHHhhc-ccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHH
Q 011744 90 LKDDDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (478)
Q Consensus 90 l~~~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~ 168 (478)
+.++++.||++|+.++..+.+.. |+..+ ++++.+.+++.+.++.++.+|+.++..+++..+. ...
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~~~~~wp--~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~------------~~~ 164 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE------------ILD 164 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTTTTCT--THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT------------HHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCccccH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH------------Hhc
Confidence 77777788888888888887764 44444 5677777777777777788887777777654321 000
Q ss_pred hcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHH
Q 011744 169 ALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVT 248 (478)
Q Consensus 169 ~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (478)
. ... ......+++.+...+++.++.|+.+|++++..+... .+.........+++.+..
T Consensus 165 ~-----------------~~~---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~--~~~~~~~~~~~~l~~l~~ 222 (852)
T 4fdd_A 165 S-----------------DVL---DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS--RTQALMLHIDSFIENLFA 222 (852)
T ss_dssp H-----------------CSS---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT--TCHHHHTSHHHHHHHHHH
T ss_pred h-----------------hhh---cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH
Confidence 0 000 011234667777778888999999999999876432 222222222356667777
Q ss_pred hhc-CChhHHHHHHHHHHHHHhhCccchhhcccee-----eeccCCChhHHHHHHHHHHHhcCcc--------cHHHHHH
Q 011744 249 LLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVF-----FCKYNDPIYVKMEKLEIMIKLASDR--------NIDQVLL 314 (478)
Q Consensus 249 ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~-----~~l~~dd~~ir~~al~lL~~l~~~~--------n~~~Iv~ 314 (478)
+++ +++++|..|++++..++..+|+.+.+|+..+ .++.+++..+|..|++.+..+++.. .+..+++
T Consensus 223 ~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p 302 (852)
T 4fdd_A 223 LAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIP 302 (852)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 775 6889999999999999999998888876422 2345667899999999999998643 3446777
Q ss_pred HHHHhh-----------hh-----------cCHHHHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcccchhHHHHHHHH
Q 011744 315 EFKEYA-----------TE-----------VDVDFVRKAVRAIGRCAIKLER-AAERCISVLLELIKIKVNYVVQEAIIV 371 (478)
Q Consensus 315 ~L~~~l-----------~~-----------~d~~~r~~~v~~i~~l~~~~~~-~~~~~i~~ll~ll~~~~~~v~~~~~~~ 371 (478)
.++..+ .+ .+..+|+.+..+++.++...+. .....++.+.+.+.+.++.++..++..
T Consensus 303 ~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~a 382 (852)
T 4fdd_A 303 VLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 382 (852)
T ss_dssp HHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 777766 22 1123688888999998887653 345677888888888899999999999
Q ss_pred HHHHHhhCCc----chHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccC------CHHHHHHHHhhcCCCCCHHHHHH
Q 011744 372 IKDIFRRYPN----TYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID------NADELLESFLESFPEEPAQVQLQ 441 (478)
Q Consensus 372 l~~i~~~~~~----~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~------~~~~~l~~l~~~~~~~~~~vk~~ 441 (478)
++.+....++ ..+.++..++..+++- ++.++.+++|.+|+++.... .-..++..+.+.+.+.++.||..
T Consensus 383 lg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 383 LGAIAEGCMQGMIPYLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHHTTTTTHHHHGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9998765432 2356777788888764 68899999999999987532 24577788887777789999999
Q ss_pred HHHHHHHHhccCCC
Q 011744 442 LLTATVKLFLKKPT 455 (478)
Q Consensus 442 il~a~~Kl~~~~~~ 455 (478)
...++..++...++
T Consensus 462 a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 462 ACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhH
Confidence 99999999866544
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=7.3e-16 Score=169.12 Aligned_cols=402 Identities=13% Similarity=0.100 Sum_probs=275.6
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhccc-----CchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCh---hhhhHHHH
Q 011744 12 TDVVNCMQTENLELKKLVYLYLINYAKS-----QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLC 83 (478)
Q Consensus 12 ~~ii~l~~s~~~~~Krl~yl~l~~~~~~-----~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~---~e~~~~l~ 83 (478)
..++..+.+.+...|..+-+++...... +++....+-+.+.+-+.++++.+|..|...++.+.. ++-.+.++
T Consensus 51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll 130 (852)
T 4fdd_A 51 IFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLL 130 (852)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHH
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3444445788999999999999987754 344445556777888999999999999999988753 45667899
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHH
Q 011744 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTL 163 (478)
Q Consensus 84 ~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~ 163 (478)
+.+.+.+.++++.+|..|+.++.+++...|+.+.... + .... ...+
T Consensus 131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~--------~----~~~~----------------------~~il 176 (852)
T 4fdd_A 131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV--------L----DRPL----------------------NIMI 176 (852)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCS--------S----SSCH----------------------HHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhh--------h----cchH----------------------HHHH
Confidence 9999999999999999999999999887665332100 0 0000 1122
Q ss_pred HHHHHhcccCChhhHHHHHHHHhhccCCChHH----HHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHH
Q 011744 164 SKLLTALNECTEWGQVFILDALSRYKAADARE----AENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (478)
Q Consensus 164 ~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~ 239 (478)
..+++.+.++++-.+...++.+..+....+.. ...+++.+...+.+.++.|+..|++++..+... .++.+...+
T Consensus 177 ~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~--~~~~~~~~l 254 (852)
T 4fdd_A 177 PKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV--RMDRLLPHM 254 (852)
T ss_dssp HHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH--CHHHHGGGH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh--CHHHHHHHH
Confidence 33444444445555555666666655433222 235777777788899999999999999887642 344444333
Q ss_pred HHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhC--ccchhhcc----cee-eec-----------cC-----------CC
Q 011744 240 KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR--PTILAHEI----KVF-FCK-----------YN-----------DP 289 (478)
Q Consensus 240 ~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~--~~~~~~~~----~~~-~~l-----------~~-----------dd 289 (478)
..+++.+..++. .++++|..|++.+..++... .+.+.+++ +.+ ..+ .+ ++
T Consensus 255 ~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~ 334 (852)
T 4fdd_A 255 HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISD 334 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CC
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccccc
Confidence 456666666665 67899999999999887532 12222222 111 111 11 22
Q ss_pred hhHHHHHHHHHHHhc---CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch----hhHHHHHHHHHHHhcccch
Q 011744 290 IYVKMEKLEIMIKLA---SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVN 362 (478)
Q Consensus 290 ~~ir~~al~lL~~l~---~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~----~~~~~~i~~ll~ll~~~~~ 362 (478)
..+|+.+...|..++ .+..+..+++.+.+.+.+.++..|..++.+++.+++..+ +.....++.++..+.+.+.
T Consensus 335 ~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~ 414 (852)
T 4fdd_A 335 WNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA 414 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH
Confidence 568888888886665 345567788888888888999999999999999987543 3456788999999999999
Q ss_pred hHHHHHHHHHHHHHhh-----CCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccC-----CHHHHHHHHhhcCC
Q 011744 363 YVVQEAIIVIKDIFRR-----YPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-----NADELLESFLESFP 432 (478)
Q Consensus 363 ~v~~~~~~~l~~i~~~-----~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~-----~~~~~l~~l~~~~~ 432 (478)
.|+..+...++++... .......++..+++.+.+ .++.++..++|.+|.+++... .-+.++..+...+.
T Consensus 415 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~ 493 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS 493 (852)
T ss_dssp HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHH
Confidence 9999999888877642 123345678888888876 368899999999998764432 23566666655554
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 011744 433 EEPAQVQLQLLTATVKLF 450 (478)
Q Consensus 433 ~~~~~vk~~il~a~~Kl~ 450 (478)
.........++.++..++
T Consensus 494 ~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 494 KYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HCCHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHH
Confidence 445555555555555554
No 9
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.77 E-value=4.2e-17 Score=171.38 Aligned_cols=420 Identities=12% Similarity=0.113 Sum_probs=287.4
Q ss_pred HHHHHhccCCChhHH-----HHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHHHHH
Q 011744 12 TDVVNCMQTENLELK-----KLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCD 84 (478)
Q Consensus 12 ~~ii~l~~s~~~~~K-----rl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~~l~~ 84 (478)
.++-+.+.+++...| |+.|+ ......-+.... .+.+-++++|+.+|.++--++..+. .+|.+..+.+
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~--~~~G~d~~~~~~----~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n 89 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAA--MTVGKDVSSLFP----DVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVN 89 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHH--HHTTCCCGGGHH----HHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH--HHCCCChHHHHH----HHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHH
Confidence 466677888886544 44443 334444445433 3445789999999987777666654 3677777889
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHH
Q 011744 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLS 164 (478)
Q Consensus 85 ~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~ 164 (478)
.+.+.+.|++|++|..|+.+++++. .|+..+ .+.+.+.+++.|++|.|+..|+.++..+....+. .+.- .+.+.
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~--~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~-~~~~~ 163 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTMGCIR--VDKITE--YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVED-QGFLD 163 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHH-HHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHH--HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hccc-ccHHH
Confidence 9999999999999999999999875 666665 5778899999999999999999999999886543 2210 23566
Q ss_pred HHHHhcccCChhhHHHHHHHHhhccCCChHH-----HHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHH
Q 011744 165 KLLTALNECTEWGQVFILDALSRYKAADARE-----AENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (478)
Q Consensus 165 ~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~-----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~ 239 (478)
.+.+.+.+.+|..+...+..|...++.+++. ....+..+...+.+.++-.....++++..+.+ .+++..
T Consensus 164 ~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~--~~~~~~---- 237 (591)
T 2vgl_B 164 SLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP--KDDREA---- 237 (591)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC--CSHHHH----
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC--CChHHH----
Confidence 7777788899999998889888877654321 12345555556666777777777887776543 133222
Q ss_pred HHhhhHHHHhhc-CChhHHHHHHHHHHHHHh---hCccchhhcc----ceeeeccCCChhHHHHHHHHHHHhcC--cccH
Q 011744 240 KKMAPPLVTLLS-AEPEIQYVALRNINLIVQ---RRPTILAHEI----KVFFCKYNDPIYVKMEKLEIMIKLAS--DRNI 309 (478)
Q Consensus 240 ~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~---~~~~~~~~~~----~~~~~l~~dd~~ir~~al~lL~~l~~--~~n~ 309 (478)
..+.+.+..++. +++.++|.|.+++..+.. .+|+.++... ..+..+.++|..+|..+++.|..++. ++-+
T Consensus 238 ~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~ 317 (591)
T 2vgl_B 238 QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEIL 317 (591)
T ss_dssp HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHH
Confidence 245566666665 688999999999999874 2455554322 22212335678999999999988874 3222
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHH
Q 011744 310 DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIAT 389 (478)
Q Consensus 310 ~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~ 389 (478)
..-+..+. ...+.+.++|+.++..+..++.. ...+.+++.+...+++.++.++.+++..++.+..++|...+..+..
T Consensus 318 ~~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~--~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~ 394 (591)
T 2vgl_B 318 KQEIKVFF-VKYNDPIYVKLEKLDIMIRLASQ--ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVST 394 (591)
T ss_dssp TTCTTTTS-CCTTSCHHHHHHHHHHHHHTCCS--STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhe-eccCChHHHHHHHHHHHHHHCCh--hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 22111111 11245588999999988887754 4567788899999999999999999999999999888777788999
Q ss_pred HHhhcCCCChhhHHHHHHHHhhcccCccCC-HHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHhccC
Q 011744 390 LCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFP-EEPAQVQLQLLTATVKLFLKK 453 (478)
Q Consensus 390 L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~-~~~~l~~l~~~~~-~~~~~vk~~il~a~~Kl~~~~ 453 (478)
|++.+++- .+.+...++-.+++.....++ -..++..+.+.+. ...+.++..++-.++.+....
T Consensus 395 Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~ 459 (591)
T 2vgl_B 395 LLDLIQTK-VNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459 (591)
T ss_dssp HHHHHHTC-CHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHccc-chHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc
Confidence 99988753 344444444444443222221 1233445555453 456778887777777665444
No 10
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.76 E-value=7.5e-16 Score=156.07 Aligned_cols=329 Identities=16% Similarity=0.100 Sum_probs=237.8
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhcc--cCchHHH-----HHHHHHHhhcCCC-CHHHHHHHHHHhcCCCh--hhhh-
Q 011744 11 FTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAI-----LAVNTFVKDSQDP-NPLIRALAVRTMGCIRV--DKIT- 79 (478)
Q Consensus 11 ~~~ii~l~~s~~~~~Krl~yl~l~~~~~--~~~e~~~-----l~in~l~kdL~~~-n~~vr~~AL~~l~~i~~--~e~~- 79 (478)
.+.+++.+++++...|..+..++..++. .++.... -+++.+.+-++++ ++.+|..|+++++++.. ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 6678888899999999999999987643 3332211 2577888888888 89999999999998753 3322
Q ss_pred ----HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcC-CChhhHHHHHHHHHHHhhhC
Q 011744 80 ----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 80 ----~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d-~~~~V~~~a~~~l~~i~~~~ 151 (478)
...+|.+.+++.++++.||..|+.++.++....|+. +-..+.++.+.+++.+ .++.|+..|+.++..++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 357888999999999999999999999998765532 2123678999999985 78999999999999998764
Q ss_pred -CCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH-----HHHHHhhhhhcCCChHHHHHHHHHHHHh
Q 011744 152 -SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQ 225 (478)
Q Consensus 152 -~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~~ 225 (478)
+........+.++.|++.+.+.++..+....+.|..+....++... .+++.+..++.+.++.|+..|+.++..+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 3333444567888888888888888888888888888755433222 3567778888999999999999999987
Q ss_pred hhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhh-----cccee-eeccCCChhHHHHHH
Q 011744 226 MELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAH-----EIKVF-FCKYNDPIYVKMEKL 297 (478)
Q Consensus 226 ~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~-----~~~~~-~~l~~dd~~ir~~al 297 (478)
.. .+++..+.+.. .+++.+..+++ +++.+|..|+.+|..++...++..+. -++.+ ..+.+++..+|+.++
T Consensus 262 ~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 262 VT--GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp TT--SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred hh--CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 53 23333332222 46677788886 67899999999999998654432221 12222 233455677888888
Q ss_pred HHHHHhcCc---ccHH-----HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhc
Q 011744 298 EIMIKLASD---RNID-----QVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (478)
Q Consensus 298 ~lL~~l~~~---~n~~-----~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~ 341 (478)
..|.+++.. +..+ .+++.|.+.+.+.+++++..++.++..++..
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 888777532 3333 2566677777777777877777777776653
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.75 E-value=1.9e-14 Score=157.67 Aligned_cols=444 Identities=12% Similarity=0.106 Sum_probs=300.9
Q ss_pred HHHHHhc-cCCChhHHHHHHHHHHHhcccC-chHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC---------------
Q 011744 12 TDVVNCM-QTENLELKKLVYLYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--------------- 74 (478)
Q Consensus 12 ~~ii~l~-~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~--------------- 74 (478)
.+++..+ .|+|...|+-+--.+..+...+ |+......+.+.. .+.++.+|..|...+.+..
T Consensus 7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~ 84 (861)
T 2bpt_A 7 AQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--ENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW 84 (861)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHhhccCcChHHHHHHHHhH
Confidence 4555566 8899999999999998876543 4443222333321 2357899999999888863
Q ss_pred ----hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhc-cc-ccccccHHHHHHHhhcCC-ChhhHHHHHHHHHHH
Q 011744 75 ----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFLESLKDLISDN-NPMVVANAVAALAEI 147 (478)
Q Consensus 75 ----~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~-p~-~~~~~~~~~~l~~lL~d~-~~~V~~~a~~~l~~i 147 (478)
+++..+.+.+.+.+.+.++++.||++++.++..+.+.. |. ..+ ++++.+.+.+.+. ++.++..|+.++..+
T Consensus 85 ~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~--~ll~~L~~~l~~~~~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP--ELMKIMVDNTGAEQPENVKRASLLALGYM 162 (861)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH--HHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 22334456677788889999999999999999998864 63 444 5778888888888 999999999999999
Q ss_pred hhhCCCC---cccccHHHHHHHHHhcccC--ChhhHHHHHHHHhhccCCC------hHHHHHHHHHhhhhhcCCChHHHH
Q 011744 148 EENSSRP---IFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAAD------AREAENIVERVTPRLQHANCAVVL 216 (478)
Q Consensus 148 ~~~~~~~---~~~~~~~~~~~Ll~~l~~~--~~~~q~~ll~~l~~~~~~~------~~~~~~~l~~l~~~l~~~~~~V~~ 216 (478)
.+...+. .-......+..+...+.+. ++-.+...++.+..+...- ......+++.+...+.+.++.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~ 242 (861)
T 2bpt_A 163 CESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA 242 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred HHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHH
Confidence 8764332 1223334555556666665 5556666777776532111 111234677777778888999999
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhC-----------------ccchhh
Q 011744 217 SAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRR-----------------PTILAH 277 (478)
Q Consensus 217 ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~-----------------~~~~~~ 277 (478)
.+++++..+.... ++.+...+. .+.+.+...+. .++.+|..|++.+..++... +..+.+
T Consensus 243 ~a~~~l~~l~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (861)
T 2bpt_A 243 AAFGCLCKIMSKY--YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS 320 (861)
T ss_dssp HHHHHHHHHHHHH--GGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHH
Confidence 9999988775422 222222222 34444444454 57899999999998887652 112222
Q ss_pred c----ccee-eecc-------CCChhHHHHHHHHHHHhcC---cccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcc
Q 011744 278 E----IKVF-FCKY-------NDPIYVKMEKLEIMIKLAS---DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL 342 (478)
Q Consensus 278 ~----~~~~-~~l~-------~dd~~ir~~al~lL~~l~~---~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~ 342 (478)
+ ++.+ ..+. +++..+|+.+.+.|..++. +..+..+++.+.+.+.+.++..|..++.+++.+++..
T Consensus 321 ~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 400 (861)
T 2bpt_A 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP 400 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC
Confidence 2 1211 1222 2336899999999877663 4556778888888888889999999999999998654
Q ss_pred h-h----hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhC------CcchHHHHHHHHhhcCCCChhhHHHHHHHHhh
Q 011744 343 E-R----AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY------PNTYESIIATLCESLDTLDEPEAKASMIWIIG 411 (478)
Q Consensus 343 ~-~----~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~------~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilG 411 (478)
. . ..+.+++.+++.+.+.++.++..+...++++.... +.....++..+++.+++ ++.++..++|.++
T Consensus 401 ~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~--~~~v~~~a~~al~ 478 (861)
T 2bpt_A 401 DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTII 478 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS--CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHH
Confidence 2 2 23455677777888888889988888888776431 23456778888888876 2778889999988
Q ss_pred cccCccC---------CHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHhccCCCcchHHHHHH
Q 011744 412 EYAERID---------NADELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPTEGPQQMIQV 464 (478)
Q Consensus 412 E~~~~~~---------~~~~~l~~l~~~~~~--~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~ 464 (478)
.++.... .-+.++..+...+.. .++.+|...+.++..+....+.+ ..+.+.+
T Consensus 479 ~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~ 541 (861)
T 2bpt_A 479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSAS 541 (861)
T ss_dssp HHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHH
T ss_pred HHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHH
Confidence 7654322 235667766665543 23789999999999999887764 4444333
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.74 E-value=2.4e-16 Score=159.77 Aligned_cols=331 Identities=15% Similarity=0.114 Sum_probs=236.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhcCCC----hh---hhhH--HHHHHHHhhcCCC-ChHHHHHHHHHHHHHHhhcccc
Q 011744 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIR----VD---KITE--YLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAEL 115 (478)
Q Consensus 46 l~in~l~kdL~~~n~~vr~~AL~~l~~i~----~~---e~~~--~l~~~i~~~l~~~-~~~VRk~A~~al~~i~~~~p~~ 115 (478)
++++.+.+.++++++.+|..|+..+.++. ++ ++++ .++|.+.+.+.++ ++.+|..|+.++.++....++.
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 35777888888999999999999887752 22 2333 5788899999998 8999999999999998755432
Q ss_pred ---cccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccc-cHHHHHHHHHhccc-CChhhHHHHHHHHhhccC
Q 011744 116 ---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNE-CTEWGQVFILDALSRYKA 190 (478)
Q Consensus 116 ---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~-~~~~~~~Ll~~l~~-~~~~~q~~ll~~l~~~~~ 190 (478)
+...+.++.+.+++.++++.|+..|+.+|..+....+...-.+ ..+.+..+++.+.+ .++-.+...++.|..++.
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 2124788999999999999999999999999987542111001 12356677777764 566667777777777653
Q ss_pred CC-----hHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHH
Q 011744 191 AD-----AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRN 263 (478)
Q Consensus 191 ~~-----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~ 263 (478)
.. ......+++.+...+++.++.|+..++.++.++.. ..++..+.+.. .+++.++.++. +++++|..|+.+
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 257 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD--GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRA 257 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS--SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHC--CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHH
Confidence 22 11124577888888899999999999999998753 13333333322 46778888886 688999999999
Q ss_pred HHHHHhhCccchh----h-cccee-eeccCCChhHHHHHHHHHHHhcC--cccHH-----HHHHHHHHhhhhcCHHHHHH
Q 011744 264 INLIVQRRPTILA----H-EIKVF-FCKYNDPIYVKMEKLEIMIKLAS--DRNID-----QVLLEFKEYATEVDVDFVRK 330 (478)
Q Consensus 264 l~~l~~~~~~~~~----~-~~~~~-~~l~~dd~~ir~~al~lL~~l~~--~~n~~-----~Iv~~L~~~l~~~d~~~r~~ 330 (478)
|..++...++..+ . -++.+ ..+.+++..+|..|+..|.+++. ++..+ .+++.|...+.+.++++|..
T Consensus 258 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~ 337 (450)
T 2jdq_A 258 VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337 (450)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 9999876553221 1 12222 23455668999999999999874 33333 46677888888889999999
Q ss_pred HHHHHHHHHhcc-hhhH-----HHHHHHHHHHhcccchhHHHHHHHHHHHHHhh
Q 011744 331 AVRAIGRCAIKL-ERAA-----ERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (478)
Q Consensus 331 ~v~~i~~l~~~~-~~~~-----~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~ 378 (478)
++.+++.++... +... ...++.+++++...+..++..++..+..+...
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999887652 2211 23567788888877777888888888777653
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.74 E-value=1.5e-15 Score=157.55 Aligned_cols=332 Identities=14% Similarity=0.120 Sum_probs=232.9
Q ss_pred chhhHHHHHHhccCCChhHHHHHHHHHHHhccc--CchHHH----HHHHHHHhhcCCC-CHHHHHHHHHHhcCCCh--hh
Q 011744 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKS--QPDLAI----LAVNTFVKDSQDP-NPLIRALAVRTMGCIRV--DK 77 (478)
Q Consensus 7 ~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~----l~in~l~kdL~~~-n~~vr~~AL~~l~~i~~--~e 77 (478)
.....+.+++.+.+++...++.+..++..++.. ++..-. -+++.|.+-|+++ ++.+|..|+.+|+++.. ++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 344578888999999999999999999887654 232111 1467888899887 99999999999998864 33
Q ss_pred hhH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhh
Q 011744 78 ITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 78 ~~~-----~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 149 (478)
... ..+|.+.+++.++++.||..|+.++.++....|+ .+...+.++.|..++.+.++.|+..|+.++..++.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 332 4578899999999999999999999999875443 22223678999999999999999999999999987
Q ss_pred hC-CCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH-----HHHHHhhhhhcCCChHHHHHHHHHHH
Q 011744 150 NS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMIL 223 (478)
Q Consensus 150 ~~-~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~ 223 (478)
.. +........+.++.|++.+.+.++..+...++.|..+....++... .+++.+..++.+.++.|+..|+.++.
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 64 3222333456778888888888888888888888888765443332 34667788889999999999999999
Q ss_pred HhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhc-----ccee-eeccCCChhHHHH
Q 011744 224 QQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHE-----IKVF-FCKYNDPIYVKME 295 (478)
Q Consensus 224 ~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~-----~~~~-~~l~~dd~~ir~~ 295 (478)
.+.. .+++..+.+.. .+++.++.++. +++.+|..|+.+|..++...++..+.. ++.+ ..+.+++..+|..
T Consensus 325 ~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 402 (530)
T 1wa5_B 325 NIVT--GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 402 (530)
T ss_dssp HHTT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHc--CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 8753 24444333332 56677788885 578899999999999886544322211 1211 1233445667777
Q ss_pred HHHHHHHhcCc-----ccHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHh
Q 011744 296 KLEIMIKLASD-----RNIDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (478)
Q Consensus 296 al~lL~~l~~~-----~n~~~-----Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~ 340 (478)
|+..|.+++.. +.... +++.|...+.+.+++++..++.++..+..
T Consensus 403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 77777666432 22222 44555566666666666666666665554
No 14
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.74 E-value=5.4e-17 Score=171.18 Aligned_cols=393 Identities=13% Similarity=0.109 Sum_probs=281.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l 125 (478)
+..+++.+++++...|+.|++-+-.+. +.+ +....+.+.+++.+++...||-+.+++..+.+.+|+... -.++.+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d-~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~--l~in~l 112 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGYP-AHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL--LMTNCI 112 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCC-CGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH--HHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCC-CcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH--HHHHHH
Confidence 456778888877777777777444321 112 244666677888899999999999999988888887543 356888
Q ss_pred HHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhh
Q 011744 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (478)
Q Consensus 126 ~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~ 205 (478)
.+-|.|+|+.++..|+.+++.|... ++....+..+.+.+.+.+|+..-+....+.++....++....+++.+..
T Consensus 113 ~kDL~~~n~~vr~lAL~~L~~i~~~------~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~ 186 (618)
T 1w63_A 113 KNDLNHSTQFVQGLALCTLGCMGSS------EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKN 186 (618)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTT
T ss_pred HHhcCCCCHhHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 8888899999999999999988632 1223445556666668888888776666655543344444467777888
Q ss_pred hhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc----------------CChhHHHHHHHHHHHHHh
Q 011744 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS----------------AEPEIQYVALRNINLIVQ 269 (478)
Q Consensus 206 ~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~----------------~~~~ir~~aL~~l~~l~~ 269 (478)
++.+.|+.|+..|+.++..+.+ .+|+.... ...+++.++.++. .++-.+...++.+..++.
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~--~~~~~~~~-~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCE--RSPDMLAH-FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCC--SHHHHHHH-HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HhCCCCHhHHHHHHHHHHHHHH--hChHHHHH-HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 8999999999999999998753 23442222 2345555555442 267788889999999988
Q ss_pred hCccchhhcccee-------eeccCCChhHHHHHHHHHHHhcCccc-HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhc
Q 011744 270 RRPTILAHEIKVF-------FCKYNDPIYVKMEKLEIMIKLASDRN-IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (478)
Q Consensus 270 ~~~~~~~~~~~~~-------~~l~~dd~~ir~~al~lL~~l~~~~n-~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~ 341 (478)
.+|+.-....+.+ ....+.+..+...+...+..+.+... ....++.|..++.+.|+++|.-++.+++.++..
T Consensus 264 ~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 264 NDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh
Confidence 7765322211111 11233446899999999998865433 235677888889989999999999999999998
Q ss_pred chhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCcc-CCH
Q 011744 342 LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-DNA 420 (478)
Q Consensus 342 ~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~-~~~ 420 (478)
.|.....+.+.++.++.+.+.+++..+++.+..+... +-.+.++..+.+++.+. +++.+..++..+|..+... ++.
T Consensus 344 ~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~--~nv~~iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~ 420 (618)
T 1w63_A 344 DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG--NNIRGMMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSK 420 (618)
T ss_dssp HHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS--SSTHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc--ccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccH
Confidence 8777777889999999999999999999999988743 33467788998888764 6788999999999988765 345
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCC
Q 011744 421 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (478)
Q Consensus 421 ~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~ 455 (478)
..++..+.+-+...+..++..++..+..+..++|+
T Consensus 421 ~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~ 455 (618)
T 1w63_A 421 RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE 455 (618)
T ss_dssp HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh
Confidence 55666665544444455666677777777777775
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.73 E-value=9.4e-15 Score=166.43 Aligned_cols=444 Identities=12% Similarity=0.117 Sum_probs=297.9
Q ss_pred hhhHHHHHHhccCCChhHHHHHHHHHHHhcccC-----chHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC---hhhhh
Q 011744 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ-----PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT 79 (478)
Q Consensus 8 ~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~-----~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~---~~e~~ 79 (478)
++-+..++.-+.|+|...|+.+--.+......+ ++..--+++.+.+.+.++|+.+|..|..+++.+. .++..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 566778888899999999999977777665432 2333456778888999999999999999887653 34567
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc----------cccccHHHHHHHhhcC-CChhhHHHHHHHHHHHh
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL----------VEDRGFLESLKDLISD-NNPMVVANAVAALAEIE 148 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~----------~~~~~~~~~l~~lL~d-~~~~V~~~a~~~l~~i~ 148 (478)
+.+.+.+.+.+.|+++.||..|+.++..+....+.. .+ .++|.+...+.| +++.++..|+.++.+++
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~--~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK--KITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH--HHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 788889999999999999999999999998755432 22 577888888884 88999999999999998
Q ss_pred hhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHH---------------------------------
Q 011744 149 ENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE--------------------------------- 195 (478)
Q Consensus 149 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~--------------------------------- 195 (478)
...+..........+..++..+.+++++.+...++.++.+....++.
T Consensus 163 ~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 163 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 76543333334556667777777777777766666555443211100
Q ss_pred ----------HHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhcC-------------
Q 011744 196 ----------AENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA------------- 252 (478)
Q Consensus 196 ----------~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~------------- 252 (478)
...+++.+...+++.++.|+..+..++..+....+. + +..+...+++.+...+..
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~-~-~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~ 320 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK-E-VYPHVSTIINICLKYLTYDPNYNYDDEDEDE 320 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC-C-CHHHHHHHHHHHTTCCCCC------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH-H-HHHhHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 012333333445566677777776666665432221 1 111223344444443321
Q ss_pred -------------------------ChhHHHHHHHHHHHHHhhCccchhhccc----ee-eeccCCChhHHHHHHHHHHH
Q 011744 253 -------------------------EPEIQYVALRNINLIVQRRPTILAHEIK----VF-FCKYNDPIYVKMEKLEIMIK 302 (478)
Q Consensus 253 -------------------------~~~ir~~aL~~l~~l~~~~~~~~~~~~~----~~-~~l~~dd~~ir~~al~lL~~ 302 (478)
..++|..|+.++..++...|+.+.+++. .+ ..+.+....+|..+++.+..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 400 (1230)
T 1u6g_C 321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 400 (1230)
T ss_dssp ------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHH
T ss_pred ccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 1246999999999999877765555543 22 22344558899999998866
Q ss_pred hcCc-------------------------ccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch----hhHHHHHHHH
Q 011744 303 LASD-------------------------RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVL 353 (478)
Q Consensus 303 l~~~-------------------------~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~----~~~~~~i~~l 353 (478)
++.. ...+.+++.+...+++.++.+|..++..++.++...+ +..+.+++.+
T Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l 480 (1230)
T 1u6g_C 401 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480 (1230)
T ss_dssp HHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHH
T ss_pred HHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHH
Confidence 6531 1223345555555888899999999999998887643 4557888999
Q ss_pred HHHhcccch--hHHHHHHHHHHHHHhhC-Ccc----hHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCcc---------
Q 011744 354 LELIKIKVN--YVVQEAIIVIKDIFRRY-PNT----YESIIATLCESLDTLDEPEAKASMIWIIGEYAERI--------- 417 (478)
Q Consensus 354 l~ll~~~~~--~v~~~~~~~l~~i~~~~-~~~----~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~--------- 417 (478)
++.+.+..+ .++.+++..+..++... ++. ...++..++..+++- .+.++..+++.+|+....+
T Consensus 481 ~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~-~~~v~~~al~~l~~l~~~~~~~~~~~~~ 559 (1230)
T 1u6g_C 481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP-FYKITSEALLVTQQLVKVIRPLDQPSSF 559 (1230)
T ss_dssp HHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred HHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHhcCccccccc
Confidence 999998764 78888888888887543 332 123466666666653 4555555555655543221
Q ss_pred ---CCHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHhccCCCc
Q 011744 418 ---DNADELLESFLESF--PEEPAQVQLQLLTATVKLFLKKPTE 456 (478)
Q Consensus 418 ---~~~~~~l~~l~~~~--~~~~~~vk~~il~a~~Kl~~~~~~~ 456 (478)
+..+.++..+.+.+ .+.++++|...+.+++.++...+++
T Consensus 560 ~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~ 603 (1230)
T 1u6g_C 560 DATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred chHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch
Confidence 11346677777767 6778999999999999998876543
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.72 E-value=5.5e-15 Score=153.25 Aligned_cols=375 Identities=15% Similarity=0.154 Sum_probs=250.9
Q ss_pred hhHHHHHHhccCCChhHHHHHHHHHHHhcccCc--hHHH----HHHHHHHhhcCCCC-HHHHHHHHHHhcCCCh--hhhh
Q 011744 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQP--DLAI----LAVNTFVKDSQDPN-PLIRALAVRTMGCIRV--DKIT 79 (478)
Q Consensus 9 ~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~--e~~~----l~in~l~kdL~~~n-~~vr~~AL~~l~~i~~--~e~~ 79 (478)
...+.+++.+.+++...+..+-.++..++...+ .... =+++.|.+-|++++ +.+|..|+.+|+++.. ++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 347888999999999999998888877754432 1111 14677888888877 9999999999998864 3332
Q ss_pred H-----HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhh-cCCChhhHHHHHHHHHHHhhh
Q 011744 80 E-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 80 ~-----~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL-~d~~~~V~~~a~~~l~~i~~~ 150 (478)
. ..+|.+.+++.++++.||..|+.++.++....|+ .+...+.++.|..++ .+.++.++..|+.++..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 2 3678899999999999999999999999876553 222236778888888 678999999999999999887
Q ss_pred CCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHH-----HHHHhhhhhcCCChHHHHHHHHHHHHh
Q 011744 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQQ 225 (478)
Q Consensus 151 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~-----~l~~l~~~l~~~~~~V~~ea~~~i~~~ 225 (478)
.+........+.++.|++.+...++..+...+..|..+....+..... +++.+..++.+.++.|+..|++++..+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 544334444567888888888888888888899998887655443322 466788889999999999999999987
Q ss_pred hhhcCChHHHHHHHH-HhhhHHHHhhc-C-ChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHHHH
Q 011744 226 MELITSTDVVRNLCK-KMAPPLVTLLS-A-EPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIK 302 (478)
Q Consensus 226 ~~~~~~~~~~~~~~~-~~~~~l~~ll~-~-~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~ 302 (478)
.. .+++..+.+.. .+++.|+.++. . ++.+|..|+.+|..++...++....
T Consensus 314 ~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~------------------------- 366 (528)
T 4b8j_A 314 VT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQA------------------------- 366 (528)
T ss_dssp TT--SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHH-------------------------
T ss_pred Hc--CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHH-------------------------
Confidence 53 24444333322 35666777774 4 6788888888888887633221110
Q ss_pred hcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcc-hhhH-----HHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 011744 303 LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL-ERAA-----ERCISVLLELIKIKVNYVVQEAIIVIKDIF 376 (478)
Q Consensus 303 l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~-~~~~-----~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~ 376 (478)
+.+. .+++.|...+.+.+++++..++.+|+.++... +... ...++.+++++...++.+...++..+.+++
T Consensus 367 ~~~~----~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 367 VINA----GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0000 23444445555556666666666666665541 1111 123556666666666666666666666665
Q ss_pred hhCCcc----------hH------HHHHHHHhhcCCCChhhHHHHHHHHhhcccC
Q 011744 377 RRYPNT----------YE------SIIATLCESLDTLDEPEAKASMIWIIGEYAE 415 (478)
Q Consensus 377 ~~~~~~----------~~------~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~ 415 (478)
...+.. .. ..++.+.+...+ .+++++..+.|++..|.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~-~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 443 KVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSH-DNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcC-CCHHHHHHHHHHHHHHCC
Confidence 432210 00 113333333332 356677777888776654
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.70 E-value=2e-15 Score=156.57 Aligned_cols=330 Identities=13% Similarity=0.132 Sum_probs=234.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCCh----h---hhh-HHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHhhcccc--
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRV----D---KIT-EYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAEL-- 115 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i~~----~---e~~-~~l~~~i~~~l~~~-~~~VRk~A~~al~~i~~~~p~~-- 115 (478)
.++.+.+.|+++|+.+|..|+..+.++.. + .++ ..++|.+.+++.++ ++.||..|+.++.++....++.
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 36777888999999999999998887632 2 122 24788899999997 8999999999999998755432
Q ss_pred -cccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCc-ccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCC-
Q 011744 116 -VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI-FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAAD- 192 (478)
Q Consensus 116 -~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~- 192 (478)
+...+.++.+..+|.++++.|+..|+.+|..++...+... .-...+.+..|++.+.+.++-.+...++.|..++...
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Confidence 2223678999999999999999999999999986532111 1111245677777777767667777777777765322
Q ss_pred ----hHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHH
Q 011744 193 ----AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINL 266 (478)
Q Consensus 193 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~ 266 (478)
......+++.+..++.+.++.|+..|+.++.++.. ..++..+.+.. .+++.|+.++. .++.+|..|+.+|..
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC--CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 11223567888888999999999999999998853 23444444433 56778888886 678999999999999
Q ss_pred HHhhCccchh----h-cccee-eeccCCChhHHHHHHHHHHHhcC--cccHH-----HHHHHHHHhhhhcCHHHHHHHHH
Q 011744 267 IVQRRPTILA----H-EIKVF-FCKYNDPIYVKMEKLEIMIKLAS--DRNID-----QVLLEFKEYATEVDVDFVRKAVR 333 (478)
Q Consensus 267 l~~~~~~~~~----~-~~~~~-~~l~~dd~~ir~~al~lL~~l~~--~~n~~-----~Iv~~L~~~l~~~d~~~r~~~v~ 333 (478)
++...+...+ . .++.+ ..+.+++..+|..|+..|.+++. ++.+. .+++.|...+.+.++++|..++.
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 405 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 405 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 9876543221 1 12222 23455668899999999999874 33333 35667778888888899999999
Q ss_pred HHHHHHhcchh---hHH-----HHHHHHHHHhcccchhHHHHHHHHHHHHHhh
Q 011744 334 AIGRCAIKLER---AAE-----RCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (478)
Q Consensus 334 ~i~~l~~~~~~---~~~-----~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~ 378 (478)
+|+.++....+ ... ..++.++.++...+..++..+...+..++..
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 99888764322 111 2466777777777777777777777776643
No 18
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.70 E-value=1.1e-13 Score=151.54 Aligned_cols=458 Identities=12% Similarity=0.131 Sum_probs=275.1
Q ss_pred CchhhHHHHHHhccCC-ChhHHHHHHHHHHHhcccC-------chHHHHHHHHHHhhcCCC--CHHHHHHHHHHhcCC--
Q 011744 6 DVSSLFTDVVNCMQTE-NLELKKLVYLYLINYAKSQ-------PDLAILAVNTFVKDSQDP--NPLIRALAVRTMGCI-- 73 (478)
Q Consensus 6 d~~~~~~~ii~l~~s~-~~~~Krl~yl~l~~~~~~~-------~e~~~l~in~l~kdL~~~--n~~vr~~AL~~l~~i-- 73 (478)
....+++.++..+.++ +...|..+...+..+.+.- ....-.+++.+.+-++++ ++.+|..|+++++.+
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3456778888888888 8888888877776665431 123334556667777777 899999999998864
Q ss_pred -Chhh-----hhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccccc--c-cHHHHHHHhhcCCChhhHHHHHHHH
Q 011744 74 -RVDK-----ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--R-GFLESLKDLISDNNPMVVANAVAAL 144 (478)
Q Consensus 74 -~~~e-----~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~--~-~~~~~l~~lL~d~~~~V~~~a~~~l 144 (478)
.... ..+.+.+.+.+.+.++++.+|+.|+.++..+...+|+.+.+ . .+++.+...+.|.++.|+..|+..+
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l 290 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1111 12457777888889999999999999999999988876542 1 3556666678899999999999998
Q ss_pred HHHhhhCC----------------CCc-ccccHHHHHHHHHhcccC------ChhhH-HHHHHHHhhccCC-ChHHHHHH
Q 011744 145 AEIEENSS----------------RPI-FEITSHTLSKLLTALNEC------TEWGQ-VFILDALSRYKAA-DAREAENI 199 (478)
Q Consensus 145 ~~i~~~~~----------------~~~-~~~~~~~~~~Ll~~l~~~------~~~~q-~~ll~~l~~~~~~-~~~~~~~~ 199 (478)
..+..... ... .......++.++..+.+. +.|.. ....+.|..+... .......+
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l 370 (861)
T 2bpt_A 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPV 370 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHH
Confidence 88765420 011 112234556666666532 34532 2233444332211 01233456
Q ss_pred HHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCcc-----
Q 011744 200 VERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT----- 273 (478)
Q Consensus 200 l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~----- 273 (478)
++.+...+++.++.++..|+.+++.+.... .++.+......+++.+...+. +++.+|..++.+++.++...+.
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 777777888999999999999999875421 234444444566777776665 6788999999998888865221
Q ss_pred -chhhcccee-eeccCCChhHHHHHHHHHHHhcCc----------ccHHHHHHHHHHhhhhc--CHHHHHHHHHHHHHHH
Q 011744 274 -ILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASD----------RNIDQVLLEFKEYATEV--DVDFVRKAVRAIGRCA 339 (478)
Q Consensus 274 -~~~~~~~~~-~~l~~dd~~ir~~al~lL~~l~~~----------~n~~~Iv~~L~~~l~~~--d~~~r~~~v~~i~~l~ 339 (478)
.+..-++.+ ..+. +++.+|..+...+..++.. .-++.+++.|...+.+. ++++|..++.+++.++
T Consensus 450 ~~~~~~l~~l~~~l~-~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQ-DHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp TTHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 122222222 1222 2366777777766655431 12455666666666532 2556666666666555
Q ss_pred hcchh------------------------------------------------------------hHHHHHHHHHHHhcc
Q 011744 340 IKLER------------------------------------------------------------AAERCISVLLELIKI 359 (478)
Q Consensus 340 ~~~~~------------------------------------------------------------~~~~~i~~ll~ll~~ 359 (478)
...+. ....+++.++..++.
T Consensus 529 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 608 (861)
T 2bpt_A 529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK 608 (861)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS
T ss_pred HHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc
Confidence 44322 122233333334444
Q ss_pred cch-hHHHHHHHHHHHHHhhCCc-c---hHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC-----HHHHHHHHhh
Q 011744 360 KVN-YVVQEAIIVIKDIFRRYPN-T---YESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADELLESFLE 429 (478)
Q Consensus 360 ~~~-~v~~~~~~~l~~i~~~~~~-~---~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~-----~~~~l~~l~~ 429 (478)
.+. .++.+++..+..+....++ . ...++..+.+.+.+ .+++++..+++++|..+..... .+.++..+.+
T Consensus 609 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 687 (861)
T 2bpt_A 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQ-VDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQ 687 (861)
T ss_dssp TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHH
Confidence 333 4555555555444432221 1 12234444455532 3455677777777665443321 2355555555
Q ss_pred cCCCC--CHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q 011744 430 SFPEE--PAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLK 467 (478)
Q Consensus 430 ~~~~~--~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~ 467 (478)
.+... ++++|..++.++..++...++. ..+.+..++.
T Consensus 688 ~l~~~~~~~~vr~~~~~~l~~l~~~~~~~-~~~~l~~~l~ 726 (861)
T 2bpt_A 688 MISNPNARRELKPAVLSVFGDIASNIGAD-FIPYLNDIMA 726 (861)
T ss_dssp HHHCTTCCTTHHHHHHHHHHHHHHHHGGG-GHHHHHHHHH
T ss_pred HhCCccccHhhhHHHHHHHHHHHHHhhhh-HHHHHHHHHH
Confidence 55443 3789999999998888776654 5555544443
No 19
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.68 E-value=2.6e-13 Score=149.01 Aligned_cols=458 Identities=11% Similarity=0.139 Sum_probs=288.4
Q ss_pred CchhhHHHHHHhccCC--ChhHHHHHHHHHHHhcccC-ch----HHHHHHHHHHhhcCCC--CHHHHHHHHHHhcCCC--
Q 011744 6 DVSSLFTDVVNCMQTE--NLELKKLVYLYLINYAKSQ-PD----LAILAVNTFVKDSQDP--NPLIRALAVRTMGCIR-- 74 (478)
Q Consensus 6 d~~~~~~~ii~l~~s~--~~~~Krl~yl~l~~~~~~~-~e----~~~l~in~l~kdL~~~--n~~vr~~AL~~l~~i~-- 74 (478)
....+++.+++.+.++ +...|+.+..++..+.+.- ++ ..-.+++.+.+-++++ ++.+|..|+++++.+.
T Consensus 125 ~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566788888888888 8888988888888776542 22 2333456677777776 7899999999988643
Q ss_pred -hhhh-----hHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccccc--c-cHHHHHHHhhcCCChhhHHHHHHHHH
Q 011744 75 -VDKI-----TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--R-GFLESLKDLISDNNPMVVANAVAALA 145 (478)
Q Consensus 75 -~~e~-----~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~--~-~~~~~l~~lL~d~~~~V~~~a~~~l~ 145 (478)
.+.+ .+.+++.+...+.+.++.||+.|+.++..+...+|+.+.+ . .+++.+...+.|.++.|+..|+..+.
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 1111 1246777888888999999999999999999888765432 1 46677777778899999999998888
Q ss_pred HHhhhC----------------C-CCcccc----cHHHHHHHHHhccc------CChhhHH-H---HHHHHhhccCCChH
Q 011744 146 EIEENS----------------S-RPIFEI----TSHTLSKLLTALNE------CTEWGQV-F---ILDALSRYKAADAR 194 (478)
Q Consensus 146 ~i~~~~----------------~-~~~~~~----~~~~~~~Ll~~l~~------~~~~~q~-~---ll~~l~~~~~~~~~ 194 (478)
.+.... + ...+.. ....+..+++.+.. .+.|... . .+..+....+ ..
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~ 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--Hh
Confidence 776531 0 111122 12344455555542 2356432 2 3333333322 12
Q ss_pred HHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCcc
Q 011744 195 EAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT 273 (478)
Q Consensus 195 ~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~ 273 (478)
....+++.+...+++.++.++..|+.+++.+.... .++.+......+++.+...++ +++.+|..|+.++.+++...+.
T Consensus 363 ~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP-EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 34467777777888999999999999999875422 224344444567777777776 6789999999999999987543
Q ss_pred ch--hhc----cceeeeccCCChhHHHHHHHHHHHhcCc--------------------ccHHHHHHHHHHhhhhc---C
Q 011744 274 IL--AHE----IKVFFCKYNDPIYVKMEKLEIMIKLASD--------------------RNIDQVLLEFKEYATEV---D 324 (478)
Q Consensus 274 ~~--~~~----~~~~~~l~~dd~~ir~~al~lL~~l~~~--------------------~n~~~Iv~~L~~~l~~~---d 324 (478)
.+ .++ ++.+.....++..+|..++..+..++.. .-++.+++.|...+.+. +
T Consensus 442 ~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~ 521 (876)
T 1qgr_A 442 AAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQ 521 (876)
T ss_dssp GTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCS
T ss_pred hcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcch
Confidence 21 222 2222212233467888888877776532 13456777766665432 1
Q ss_pred HHHH--------------------------------------------------------HHHHHHHHHHHhcch-----
Q 011744 325 VDFV--------------------------------------------------------RKAVRAIGRCAIKLE----- 343 (478)
Q Consensus 325 ~~~r--------------------------------------------------------~~~v~~i~~l~~~~~----- 343 (478)
..+| ..++..++.++...+
T Consensus 522 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 601 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL 601 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh
Confidence 2333 333444444443332
Q ss_pred hhHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHhhCCc----chHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCcc
Q 011744 344 RAAERCISVLLELIKIKV--NYVVQEAIIVIKDIFRRYPN----TYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI 417 (478)
Q Consensus 344 ~~~~~~i~~ll~ll~~~~--~~v~~~~~~~l~~i~~~~~~----~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~ 417 (478)
+.....++.++++++... ..++..++..+..++...++ ....++..+...+++..++.++..++|.+|+.+...
T Consensus 602 ~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 681 (876)
T 1qgr_A 602 QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL 681 (876)
T ss_dssp TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH
Confidence 222344555566666553 36777788777777654222 234556666666665445778888999988876443
Q ss_pred CC-----HHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q 011744 418 DN-----ADELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLK 467 (478)
Q Consensus 418 ~~-----~~~~l~~l~~~~~~--~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~ 467 (478)
.. .++++..+.+.+.. .+.++|..++.+++.++...+++ ..+.+..++.
T Consensus 682 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~-~~~~l~~~~~ 737 (876)
T 1qgr_A 682 QSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE-FKKYLEVVLN 737 (876)
T ss_dssp GGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG-GGGGHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchh-HHHHHHHHHH
Confidence 21 35677777776654 35789999999999988766654 4443444433
No 20
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.68 E-value=4.5e-14 Score=150.18 Aligned_cols=394 Identities=14% Similarity=0.118 Sum_probs=279.3
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccCchH----HHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCh--------hh
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDL----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--------DK 77 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~----~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~--------~e 77 (478)
..+.++.+++|++...++-++.++...+.. ++. .-..++.|.+-+++.++.+|..|+-.|++++. +.
T Consensus 291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 291 ILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccc
Confidence 346788899999999999999999986655 442 22234777788889999999999999998742 12
Q ss_pred h----hHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHhhcc---cccccccHHHHHHHhhcCCChhhHHHHHHHHHHHh
Q 011744 78 I----TEYLCDPLQRCLKDD--DPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 78 ~----~~~l~~~i~~~l~~~--~~~VRk~A~~al~~i~~~~p---~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~ 148 (478)
+ ++.+++.+.++|.++ ++.+|+.|+.++..+....+ +.+.+.++++.|..+|++.++.+++.|+.+|..|.
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt 449 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC 449 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 2 456788899999887 89999999999998865432 33434588999999999999999999999999998
Q ss_pred hhCCCC-----------c----------------------ccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHH
Q 011744 149 ENSSRP-----------I----------------------FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE 195 (478)
Q Consensus 149 ~~~~~~-----------~----------------------~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~ 195 (478)
...... + .-.-.+.++.|++.+..++|-.|-...+.|..+.. +++.
T Consensus 450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~ 528 (810)
T 3now_A 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKEL 528 (810)
T ss_dssp TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHH
T ss_pred CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHH
Confidence 743100 0 00011456667777777888888888898988874 3333
Q ss_pred HHH-----HHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHH--HHHHHhhhHHHHhhcCC--hhHHHHHHHHHHH
Q 011744 196 AEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVR--NLCKKMAPPLVTLLSAE--PEIQYVALRNINL 266 (478)
Q Consensus 196 ~~~-----~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~~--~~ir~~aL~~l~~ 266 (478)
... .++.+..++++.++.++..|+.++.++.-. .+|+..- +....++++|+.+++++ ...++.|+.+|..
T Consensus 529 r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~-~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~N 607 (810)
T 3now_A 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGIT-INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcC-CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 332 466788888888899999999999887532 3444310 11235789999999743 3457899999999
Q ss_pred HHhhCcc----chhhc-ccee-eeccCCChhHHHHHHHHHHHhcCc-ccHHH------HHHHHHHhhhhcCHHHHHHHHH
Q 011744 267 IVQRRPT----ILAHE-IKVF-FCKYNDPIYVKMEKLEIMIKLASD-RNIDQ------VLLEFKEYATEVDVDFVRKAVR 333 (478)
Q Consensus 267 l~~~~~~----~~~~~-~~~~-~~l~~dd~~ir~~al~lL~~l~~~-~n~~~------Iv~~L~~~l~~~d~~~r~~~v~ 333 (478)
++...++ ++... ++.+ .++.+++..+++.|++++.+++.. ++... .++-|..++...+.+++++++.
T Consensus 608 La~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ 687 (810)
T 3now_A 608 LASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAG 687 (810)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHH
Confidence 9986543 22221 3322 344567788999999999998754 23222 4566778888889999999999
Q ss_pred HHHHHHhcchhhH------HHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHH-----HHHHHHhhcCCC--Chh
Q 011744 334 AIGRCAIKLERAA------ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES-----IIATLCESLDTL--DEP 400 (478)
Q Consensus 334 ~i~~l~~~~~~~~------~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~-----~i~~L~~~l~~~--~~~ 400 (478)
+|+.++...+... ...++.+.+++..++..+...+...+.++....++..++ +++.|.+.+..- .++
T Consensus 688 ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~ 767 (810)
T 3now_A 688 ALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRA 767 (810)
T ss_dssp HHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTH
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcH
Confidence 9999887433222 235668889999888889999999999888755554433 355566655432 244
Q ss_pred hHHHHH
Q 011744 401 EAKASM 406 (478)
Q Consensus 401 ~~~~~~ 406 (478)
++...+
T Consensus 768 ~i~e~A 773 (810)
T 3now_A 768 KAREVA 773 (810)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 21
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.66 E-value=5.4e-13 Score=146.46 Aligned_cols=441 Identities=13% Similarity=0.123 Sum_probs=295.8
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhcccC-chHHHHHHHHHHhhcCC--CCHHHHHHHHHHhcCCC--------------
Q 011744 12 TDVVNCMQTENLELKKLVYLYLINYAKSQ-PDLAILAVNTFVKDSQD--PNPLIRALAVRTMGCIR-------------- 74 (478)
Q Consensus 12 ~~ii~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~in~l~kdL~~--~n~~vr~~AL~~l~~i~-------------- 74 (478)
.+++..+.|++...|+-+-..+..+...+ ++.. +.+..-+.+ .++.+|..|...+.+.-
T Consensus 4 ~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~----~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFL----VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHH----HHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 45666778899999999999998876543 3332 333333333 57899999988877631
Q ss_pred ----hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhc-c-cccccccHHHHHHHhhcCC--ChhhHHHHHHHHHH
Q 011744 75 ----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-A-ELVEDRGFLESLKDLISDN--NPMVVANAVAALAE 146 (478)
Q Consensus 75 ----~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~-p-~~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~ 146 (478)
.++..+.+.+.+.+.+.++++.+ +.++.++..+.+.. | +..+ ++++.+.+.+.++ ++.++..++.++..
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~--~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWP--ELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 22334445566888888888889 99999999998753 4 4444 5789999999888 99999999999999
Q ss_pred HhhhCCCCc-ccccHHHHHHHHHhcccC--ChhhHHHHHHHHhhccCCCh------HHHHHHHHHhhhhhcCCChHHHHH
Q 011744 147 IEENSSRPI-FEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAADA------REAENIVERVTPRLQHANCAVVLS 217 (478)
Q Consensus 147 i~~~~~~~~-~~~~~~~~~~Ll~~l~~~--~~~~q~~ll~~l~~~~~~~~------~~~~~~l~~l~~~l~~~~~~V~~e 217 (478)
+.+...++. .......+..+.+.+.+. ++-.+...++.+..+...-. .....+++.+...+.+.++.|+..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 887532111 122334455556666555 33345556676665332111 111246777777777888999999
Q ss_pred HHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc---------------------cc
Q 011744 218 AVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP---------------------TI 274 (478)
Q Consensus 218 a~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~---------------------~~ 274 (478)
+++++..+... .++.+...+. .+.+.+..... .++++|..+++.+..++...+ ..
T Consensus 237 a~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 237 ALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp HHHHHHHHHHH--SGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHH
Confidence 99988877542 2222222222 34444444443 578899999999888875421 11
Q ss_pred hhhcc----cee-eecc-------CCChhHHHHHHHHHHHhcC---cccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 011744 275 LAHEI----KVF-FCKY-------NDPIYVKMEKLEIMIKLAS---DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCA 339 (478)
Q Consensus 275 ~~~~~----~~~-~~l~-------~dd~~ir~~al~lL~~l~~---~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~ 339 (478)
..++. +.+ ..+. +++..+|+.+.+.+..++. +..++.+++.+...+.+.++.+|..++.+++.++
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 11121 111 1111 2347899999888877653 4456778888888888899999999999999998
Q ss_pred hcch-----hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCC------cchHHHHHHHHhhcCCCChhhHHHHHHH
Q 011744 340 IKLE-----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP------NTYESIIATLCESLDTLDEPEAKASMIW 408 (478)
Q Consensus 340 ~~~~-----~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~------~~~~~~i~~L~~~l~~~~~~~~~~~~~~ 408 (478)
+..+ +.....++.++..+.+....|+..+...++++....+ .....++..++..+++ .+.++..++|
T Consensus 395 ~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~ 472 (876)
T 1qgr_A 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCW 472 (876)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 7653 2234567778888888888999999999999886543 3446778888888876 3778888899
Q ss_pred HhhcccCc-------------------cCCHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHHhccCCCcchHHHHHH
Q 011744 409 IIGEYAER-------------------IDNADELLESFLESFPE---EPAQVQLQLLTATVKLFLKKPTEGPQQMIQV 464 (478)
Q Consensus 409 ilGE~~~~-------------------~~~~~~~l~~l~~~~~~---~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~ 464 (478)
.++.++.. .+..+.++..+...+.. ++..+|...+.++..+....+.+ ..+.+..
T Consensus 473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~~~ 549 (876)
T 1qgr_A 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD-CYPAVQK 549 (876)
T ss_dssp HHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST-THHHHHH
T ss_pred HHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh-hHHHHHH
Confidence 88775532 23345677777665543 35689999999999998877754 4443333
No 22
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.66 E-value=3.1e-13 Score=143.73 Aligned_cols=429 Identities=12% Similarity=0.066 Sum_probs=302.8
Q ss_pred hccCCChhHHHHHHHHHHHhcccCchHHHH------HHHHHHhhcCCCCHHHHHHHHHHhcCCChhh-----hhHHHHHH
Q 011744 17 CMQTENLELKKLVYLYLINYAKSQPDLAIL------AVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----ITEYLCDP 85 (478)
Q Consensus 17 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l------~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e-----~~~~l~~~ 85 (478)
.+..++...+-.+.-+++.++.-.+|..-- +++.+.+-++|+++.++..|+.++++.++.. +.+.-+|.
T Consensus 255 ~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~ 334 (810)
T 3now_A 255 KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDI 334 (810)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHH
T ss_pred HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHH
Confidence 467788899988999999999888886432 4577888889999999999999988876432 22233488
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhh---ccc--cccc---ccHHHHHHHhhcCC--ChhhHHHHHHHHHHHhhhCCC-C
Q 011744 86 LQRCLKDDDPYVRKTAAICVAKLYDI---NAE--LVED---RGFLESLKDLISDN--NPMVVANAVAALAEIEENSSR-P 154 (478)
Q Consensus 86 i~~~l~~~~~~VRk~A~~al~~i~~~---~p~--~~~~---~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i~~~~~~-~ 154 (478)
+..++.++++.+|..|+.++.++... +|. .+.. ..+++.+.++|.++ |+.++..|+.+|.++...... .
T Consensus 335 L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~ 414 (810)
T 3now_A 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKE 414 (810)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 99999999999999999999999642 221 1211 14577888888877 899999999999998754311 1
Q ss_pred cccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCCh----------------------------HHH----H-----
Q 011744 155 IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA----------------------------REA----E----- 197 (478)
Q Consensus 155 ~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~----------------------------~~~----~----- 197 (478)
.+....+.++.|++.+...++-.|...+++|.++....+ +.. .
T Consensus 415 ~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea 494 (810)
T 3now_A 415 KLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE 494 (810)
T ss_dssp HHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC
Confidence 122234677888888877777788888888887764220 001 1
Q ss_pred HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhh-Cccc
Q 011744 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQR-RPTI 274 (478)
Q Consensus 198 ~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~-~~~~ 274 (478)
..++.+..++++.++.++-+|++++.++. .+++....+++ .++++|+.++. .++..|..|..+|.+++.. +|+.
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA---~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVC---GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHH---TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 14667778899999999999999999985 35554444444 57888999995 6788999999999999865 4543
Q ss_pred -hh-----hcccee-eeccCC-ChhHHHHHHHHHHHhcCc--ccHHHH-----HHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 011744 275 -LA-----HEIKVF-FCKYND-PIYVKMEKLEIMIKLASD--RNIDQV-----LLEFKEYATEVDVDFVRKAVRAIGRCA 339 (478)
Q Consensus 275 -~~-----~~~~~~-~~l~~d-d~~ir~~al~lL~~l~~~--~n~~~I-----v~~L~~~l~~~d~~~r~~~v~~i~~l~ 339 (478)
|. .-++.+ ..+.++ +...+..|+..|.+++.. ++.+.| ++.|..++.+.++.+++.++..|+.++
T Consensus 572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 21 112322 233444 344556899999999864 444443 556888888889999999999999988
Q ss_pred hcchhhHH------HHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchH------HHHHHHHhhcCCCChhhHHHHHH
Q 011744 340 IKLERAAE------RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE------SIIATLCESLDTLDEPEAKASMI 407 (478)
Q Consensus 340 ~~~~~~~~------~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~------~~i~~L~~~l~~~~~~~~~~~~~ 407 (478)
..- .... ..+..++.++...+..+..++...+..+...+++... ..++.|++.+.. .+++++..++
T Consensus 652 ~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~A~ 729 (810)
T 3now_A 652 MSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPAVQHRGI 729 (810)
T ss_dssp TSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHHHHHHHH
T ss_pred CCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHHHHHHHH
Confidence 631 1111 2467888888888888999999999999875555433 345678887775 4788899999
Q ss_pred HHhhcccCccCC-HH-----HHHHHHhhcCCC---CCHHHHHHHHHHHHHHh
Q 011744 408 WIIGEYAERIDN-AD-----ELLESFLESFPE---EPAQVQLQLLTATVKLF 450 (478)
Q Consensus 408 ~ilGE~~~~~~~-~~-----~~l~~l~~~~~~---~~~~vk~~il~a~~Kl~ 450 (478)
|+++......+. .. ..++.+.+-+.. .++++....+.++-++.
T Consensus 730 ~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 730 VIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 999887652211 11 334444443332 25777777777766654
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.65 E-value=1.8e-14 Score=146.30 Aligned_cols=357 Identities=14% Similarity=0.146 Sum_probs=232.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCCCh---hhhhHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHhhcc----------
Q 011744 49 NTFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCLKD--DDPYVRKTAAICVAKLYDINA---------- 113 (478)
Q Consensus 49 n~l~kdL~~~n~~vr~~AL~~l~~i~~---~e~~~~l~~~i~~~l~~--~~~~VRk~A~~al~~i~~~~p---------- 113 (478)
..+...+.++|+.+|..|-..|..+.. |++... +...+.+ .++.||..|+..+.+..+.+.
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~----L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVE----LSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHH----HHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 344566778899999999998887653 344443 4444443 478999999999988764320
Q ss_pred -ccccc---ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCC-CcccccHHHHHHHHHhcccC--ChhhHHHHHHHHh
Q 011744 114 -ELVED---RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSHTLSKLLTALNEC--TEWGQVFILDALS 186 (478)
Q Consensus 114 -~~~~~---~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~-~~~~~~~~~~~~Ll~~l~~~--~~~~q~~ll~~l~ 186 (478)
..+++ ..+.+.+...+.+.++.+ ..+..++..|.....+ ..|. ..+..++..+.+. ++-.+...++.|+
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~---~ll~~L~~~l~~~~~~~~~r~~al~~l~ 155 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP---ELIPQLVANVTNPNSTEHMKESTLEAIG 155 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT---THHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH---HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 01111 134466667788888888 8888889888876532 2454 3455566666555 5545555666666
Q ss_pred hccCC-----ChHHHHHHHHHhhhhhcCC--ChHHHHHHHHHHHHhhhhcCC---hHHHHHHHHHhhhHHHHhhc-CChh
Q 011744 187 RYKAA-----DAREAENIVERVTPRLQHA--NCAVVLSAVKMILQQMELITS---TDVVRNLCKKMAPPLVTLLS-AEPE 255 (478)
Q Consensus 187 ~~~~~-----~~~~~~~~l~~l~~~l~~~--~~~V~~ea~~~i~~~~~~~~~---~~~~~~~~~~~~~~l~~ll~-~~~~ 255 (478)
.++.. -......+++.+...+++. ++.|+.+|++++..+.+.+++ ..... ..+.+.+...+. .+++
T Consensus 156 ~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~~ 232 (462)
T 1ibr_B 156 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER---HFIMQVVCEATQCPDTR 232 (462)
T ss_dssp HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH---HHHHHHHHHHTTCSSHH
T ss_pred HHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHhcCCCCHH
Confidence 54321 1223346778888888887 789999999999886543221 11111 113444455554 6789
Q ss_pred HHHHHHHHHHHHHhhCccchhhccc-ee-----eeccCCChhHHHHHHHHHHHhcCcc----------------------
Q 011744 256 IQYVALRNINLIVQRRPTILAHEIK-VF-----FCKYNDPIYVKMEKLEIMIKLASDR---------------------- 307 (478)
Q Consensus 256 ir~~aL~~l~~l~~~~~~~~~~~~~-~~-----~~l~~dd~~ir~~al~lL~~l~~~~---------------------- 307 (478)
+|..+++.+..++..+|+.+.+|+. .+ .++.+++..+|..+++.+..++...
T Consensus 233 vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 312 (462)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH
Confidence 9999999999999999888777755 32 2234667889999999988876532
Q ss_pred -----cHHHHHHHHHHhhhhc-------CHHHHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 011744 308 -----NIDQVLLEFKEYATEV-------DVDFVRKAVRAIGRCAIKLER-AAERCISVLLELIKIKVNYVVQEAIIVIKD 374 (478)
Q Consensus 308 -----n~~~Iv~~L~~~l~~~-------d~~~r~~~v~~i~~l~~~~~~-~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~ 374 (478)
....+++.++..+.+. +...|+.+...++.++..++. .....++.+...+.+.++.++..++..++.
T Consensus 313 ~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~ 392 (462)
T 1ibr_B 313 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGC 392 (462)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 1255666666666432 245777778888887776653 223455566666777777888888888887
Q ss_pred HHhhCC-c----chHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCcc
Q 011744 375 IFRRYP-N----TYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI 417 (478)
Q Consensus 375 i~~~~~-~----~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~ 417 (478)
+..... + ....++..++..+.+ .++.++..++|.+|.++...
T Consensus 393 l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 393 ILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp TSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHG
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhc
Confidence 765322 1 124466777777765 35777888888888876543
No 24
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.64 E-value=2e-13 Score=140.72 Aligned_cols=366 Identities=19% Similarity=0.172 Sum_probs=250.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCC----Chh---hhhH-HHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhcccc--
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCI----RVD---KITE-YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAEL-- 115 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~---e~~~-~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~p~~-- 115 (478)
.+..+.+.++|+|+..+-.|.+.+.++ .+| ++++ .++|.+.++|.+ .++.++..|+.|+.++...+++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 467788899999999888887655433 333 3333 368999999975 66899999999999998766543
Q ss_pred -cccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCc-ccccHHHHHHHHHhcccCCh-----hhHHHHHHHHhhc
Q 011744 116 -VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI-FEITSHTLSKLLTALNECTE-----WGQVFILDALSRY 188 (478)
Q Consensus 116 -~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~~Ll~~l~~~~~-----~~q~~ll~~l~~~ 188 (478)
+-+.+.+|.|..+|.++++.|+..|+.+|+.|+.+.+... .-.-.+.+..++..+..++. ..+..+...+..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 3345789999999999999999999999999986542111 11112345667776654432 1223344555544
Q ss_pred cCC-----ChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHH
Q 011744 189 KAA-----DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVAL 261 (478)
Q Consensus 189 ~~~-----~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL 261 (478)
+.. .......+++.+..++.+.++.|+..|+.++.++.. .+++..+.+.. .+++.|+.++. +++.++..++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al 295 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD--GPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh--chhhhHHHHHhcccchhhhhhhcCCChhhhhHHH
Confidence 321 122335678888889999999999999999998753 23333333322 45677888886 6889999999
Q ss_pred HHHHHHHhhCccc----hhh-cccee-eeccCCChhHHHHHHHHHHHhcCc--ccHH-----HHHHHHHHhhhhcCHHHH
Q 011744 262 RNINLIVQRRPTI----LAH-EIKVF-FCKYNDPIYVKMEKLEIMIKLASD--RNID-----QVLLEFKEYATEVDVDFV 328 (478)
Q Consensus 262 ~~l~~l~~~~~~~----~~~-~~~~~-~~l~~dd~~ir~~al~lL~~l~~~--~n~~-----~Iv~~L~~~l~~~d~~~r 328 (478)
+++..++..++.. +.. -++.+ ..+.+++..+|+.|...|.+++.. +... .+++.|...+++.+.++|
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence 9999998765432 221 13333 345667789999999999999743 3333 257778888999999999
Q ss_pred HHHHHHHHHHHhcchhhH------HHHHHHHHHHhcccchhHHHHHHHHHHHHHhhC---Ccch--HHH------HHHHH
Q 011744 329 RKAVRAIGRCAIKLERAA------ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY---PNTY--ESI------IATLC 391 (478)
Q Consensus 329 ~~~v~~i~~l~~~~~~~~------~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~---~~~~--~~~------i~~L~ 391 (478)
++++.+|+.++....... .-.++.++++|+..+..+...++..+.+++... ++.. ... ++. +
T Consensus 376 ~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~-i 454 (510)
T 3ul1_B 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK-I 454 (510)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHH-H
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHH-H
Confidence 999999999886532211 234788999999999888888888888877532 2111 111 222 2
Q ss_pred hhcCCCChhhHHHHHHHHhhcccC
Q 011744 392 ESLDTLDEPEAKASMIWIIGEYAE 415 (478)
Q Consensus 392 ~~l~~~~~~~~~~~~~~ilGE~~~ 415 (478)
+.|..-.+.++...+..+|-.|..
T Consensus 455 e~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 455 EALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCC
Confidence 333433456677788888877653
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.64 E-value=8e-14 Score=144.45 Aligned_cols=370 Identities=13% Similarity=0.099 Sum_probs=260.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc----cccccccHHHHHHHhhcCCC-hhhHHHHHHHHHHHhhhCCCCcc
Q 011744 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLISDNN-PMVVANAVAALAEIEENSSRPIF 156 (478)
Q Consensus 82 l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p----~~~~~~~~~~~l~~lL~d~~-~~V~~~a~~~l~~i~~~~~~~~~ 156 (478)
-+|.+.+.+.++++.+|..|+.++.++....+ +.+...+.++.|..+|.+.+ +.++..|+.+|..++..++....
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 36778888999999999999999999976543 12223478899999998877 99999999999999875322111
Q ss_pred c-ccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHH-----HHHHhhhhh-cCCChHHHHHHHHHHHHhhhhc
Q 011744 157 E-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRL-QHANCAVVLSAVKMILQQMELI 229 (478)
Q Consensus 157 ~-~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~-----~l~~l~~~l-~~~~~~V~~ea~~~i~~~~~~~ 229 (478)
. ...+.+..|++.+.+.++-.+...++.|..++..++..... .++.+..++ .+.++.++..|+.++..+...-
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 1 11246778888888888888888888888876544432222 456677777 5778999999999999886421
Q ss_pred CChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhh-----cccee-eeccCCChhHHHHHHHHHHH
Q 011744 230 TSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAH-----EIKVF-FCKYNDPIYVKMEKLEIMIK 302 (478)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~-----~~~~~-~~l~~dd~~ir~~al~lL~~ 302 (478)
+.+. ......+++.|+.++. .+++++..++.+|..++...++..+. .++.+ ..+.+++..++..|+.+|.+
T Consensus 235 ~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 235 PQPS--FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp SCCC--HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCc--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 2222 1222467788888886 68999999999999998765432211 12322 34556678999999999999
Q ss_pred hcCcc--cHH-----HHHHHHHHhhhhc-CHHHHHHHHHHHHHHHhcchhhHH-----HHHHHHHHHhcccchhHHHHHH
Q 011744 303 LASDR--NID-----QVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERAAE-----RCISVLLELIKIKVNYVVQEAI 369 (478)
Q Consensus 303 l~~~~--n~~-----~Iv~~L~~~l~~~-d~~~r~~~v~~i~~l~~~~~~~~~-----~~i~~ll~ll~~~~~~v~~~~~ 369 (478)
++... ..+ .+++.|...+.+. ++.++.+++.+|+.++...+.... ..++.+++++..++..++.++.
T Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 392 (528)
T 4b8j_A 313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA 392 (528)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 98632 222 2578888888888 999999999999999864332221 3467889999988889999999
Q ss_pred HHHHHHHhh-CCcchHH-----HHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC-----------HH------HHHHH
Q 011744 370 IVIKDIFRR-YPNTYES-----IIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----------AD------ELLES 426 (478)
Q Consensus 370 ~~l~~i~~~-~~~~~~~-----~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~-----------~~------~~l~~ 426 (478)
..+.++... .++...+ ++..|++.++. .+++++..++|+++......+. -. ..++.
T Consensus 393 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 393 WAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 999999876 4554433 46678888876 4778888888888776432110 01 11222
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhccCC
Q 011744 427 FLESFPEEPAQVQLQLLTATVKLFLKKP 454 (478)
Q Consensus 427 l~~~~~~~~~~vk~~il~a~~Kl~~~~~ 454 (478)
+..-...++++++......+-+++....
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 3222345788999999988888876533
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.62 E-value=1.4e-13 Score=148.81 Aligned_cols=434 Identities=12% Similarity=0.103 Sum_probs=270.6
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhh-----h--hHHH
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----I--TEYL 82 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e-----~--~~~l 82 (478)
..+.+++.+.+++...|+.+--.+... ...++..=+++.|.+-|.++++.+|..|+.+|+++...+ + .+..
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~--~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQ--DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhh--hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 446778888888877766543333321 223444456788888888999999999999999875321 1 2356
Q ss_pred HHHHHhhcCC-CChHHHHHHHHHHHHHHhhc--ccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccc-
Q 011744 83 CDPLQRCLKD-DDPYVRKTAAICVAKLYDIN--AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI- 158 (478)
Q Consensus 83 ~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~- 158 (478)
++.+.+.+.+ .++.+|+.|+.++.++.... ...+...+.++.|..+|.+.++.|+..|+.+|..++.........+
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~ 273 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 7778888864 59999999999999976531 1223234788999999999999999999999999987653221111
Q ss_pred cHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH-----HHHHHhhhhhcCCChH-HHHHHHHHHHHhhhhcCCh
Q 011744 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCA-VVLSAVKMILQQMELITST 232 (478)
Q Consensus 159 ~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~-V~~ea~~~i~~~~~~~~~~ 232 (478)
..+.+..|++.+.+.++-.+...+..|..+...+++... ..++.+..++++.++. +...++.++..+.. ++
T Consensus 274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~---~~ 350 (780)
T 2z6g_A 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CS 350 (780)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT---ST
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---Ch
Confidence 125677888888766554444455555544433332222 2456666777766654 44455666665532 33
Q ss_pred HHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccc--hhhcccee-eeccCCChhHHHHHHHHHHHhcCcc
Q 011744 233 DVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI--LAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDR 307 (478)
Q Consensus 233 ~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~--~~~~~~~~-~~l~~dd~~ir~~al~lL~~l~~~~ 307 (478)
+....+++ .+++.|+.++. .++.++..++.++..++...+.. ....++.+ ..+.+++..+|..++.+|.+++...
T Consensus 351 ~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 351 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 33333322 45677888886 57889999999999999765432 22223322 2345677899999999999998643
Q ss_pred --cHH-----HHHHHHHHhhhhc-C-HHHHHHHHHHHHHHHhcchhh--H------HHHHHHHHHHhcccch-hHHHHHH
Q 011744 308 --NID-----QVLLEFKEYATEV-D-VDFVRKAVRAIGRCAIKLERA--A------ERCISVLLELIKIKVN-YVVQEAI 369 (478)
Q Consensus 308 --n~~-----~Iv~~L~~~l~~~-d-~~~r~~~v~~i~~l~~~~~~~--~------~~~i~~ll~ll~~~~~-~v~~~~~ 369 (478)
+.. ..++.|...+.+. + .+++..++.+|+.++...+.. . ...++.+++++..... .++.++.
T Consensus 431 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~ 510 (780)
T 2z6g_A 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHH
Confidence 332 2466777777653 3 489999999999997654321 1 1347888999988775 8899999
Q ss_pred HHHHHHHhhCCcch-----HHHHHHHHhhcCCCChhhHHHHHHHHhhc----------------------ccCccCCH--
Q 011744 370 IVIKDIFRRYPNTY-----ESIIATLCESLDTLDEPEAKASMIWIIGE----------------------YAERIDNA-- 420 (478)
Q Consensus 370 ~~l~~i~~~~~~~~-----~~~i~~L~~~l~~~~~~~~~~~~~~ilGE----------------------~~~~~~~~-- 420 (478)
..++++... ++.+ ..++..|++.+.+ .++++++.++|.+|. .+....+.
T Consensus 511 ~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~ 588 (780)
T 2z6g_A 511 GLIRNLALC-PANHAPLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV 588 (780)
T ss_dssp HHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHH-HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHh-cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHH
Confidence 999998753 2222 2345666666653 133444455555544 22110000
Q ss_pred ---HHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 011744 421 ---DELLESFLESFPEEPAQVQLQLLTATVKLF 450 (478)
Q Consensus 421 ---~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~ 450 (478)
...+..+.+-+...++.++.....++..++
T Consensus 589 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp HHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 012344555566788999999998888876
No 27
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.62 E-value=3.7e-13 Score=153.33 Aligned_cols=445 Identities=11% Similarity=0.137 Sum_probs=269.7
Q ss_pred chhhHHHHHHhccCCChhHHHHHHHHHHHhcccCc-hHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC---hh------
Q 011744 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQP-DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD------ 76 (478)
Q Consensus 7 ~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~-e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~---~~------ 76 (478)
.......+++.+.+++...|+.+..++..++..-+ +..--+++.+.+.+.++++.+|..|..+++.+. .+
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 34556677777778888888888888877765433 345556777777777777777877777776553 11
Q ss_pred ---hhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHhhcc-c---ccccccHHHHHHHhhcCCChhhHHHHHHHHHHHh
Q 011744 77 ---KITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINA-E---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 77 ---e~~~~l~~~i~~~l~-~~~~~VRk~A~~al~~i~~~~p-~---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~ 148 (478)
...+.++|.+.+.+. ++++.+|..|+.++..+....+ . ..+ .+++.+.+.+.|+++.|+..|+.++..+.
T Consensus 126 ~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~--~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP--SILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH--HHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 246677777777777 4777778878777777764322 1 222 56677777777777777777777776665
Q ss_pred hhCCCCccc---------------------------------------ccHHHHHHHHHhcccCChhhHHHHHHHHh---
Q 011744 149 ENSSRPIFE---------------------------------------ITSHTLSKLLTALNECTEWGQVFILDALS--- 186 (478)
Q Consensus 149 ~~~~~~~~~---------------------------------------~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~--- 186 (478)
...+...+. .....++.+++.+.+.++-.+...++.+.
T Consensus 204 ~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 204 MSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV 283 (1230)
T ss_dssp TTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 443221111 11223333333333333332222222222
Q ss_pred hccCCC-hHHHHHHHHHhhhhhc-------------------------------------CCChHHHHHHHHHHHHhhhh
Q 011744 187 RYKAAD-AREAENIVERVTPRLQ-------------------------------------HANCAVVLSAVKMILQQMEL 228 (478)
Q Consensus 187 ~~~~~~-~~~~~~~l~~l~~~l~-------------------------------------~~~~~V~~ea~~~i~~~~~~ 228 (478)
...+.+ ......+++.+...+. +..+.|+..|+.++..+...
T Consensus 284 ~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~ 363 (1230)
T 1u6g_C 284 RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST 363 (1230)
T ss_dssp HCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTT
T ss_pred HHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh
Confidence 222221 1122233443333222 12356788888888876542
Q ss_pred cCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc-------------------cchhhcccee-----e
Q 011744 229 ITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP-------------------TILAHEIKVF-----F 283 (478)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~-------------------~~~~~~~~~~-----~ 283 (478)
.++.+..+...+.+.+...+. +++++|..+++++..+..... ..+..+++.+ .
T Consensus 364 --~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~ 441 (1230)
T 1u6g_C 364 --RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHK 441 (1230)
T ss_dssp --CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHH
T ss_pred --chhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHH
Confidence 223333444456666666664 678999999999988876421 1223333321 1
Q ss_pred eccCCChhHHHHHHHHHHHhcCc------ccHHHHHHHHHHhhhhcC--HHHHHHHHHHHHHHHhcch-----hhHHHHH
Q 011744 284 CKYNDPIYVKMEKLEIMIKLASD------RNIDQVLLEFKEYATEVD--VDFVRKAVRAIGRCAIKLE-----RAAERCI 350 (478)
Q Consensus 284 ~l~~dd~~ir~~al~lL~~l~~~------~n~~~Iv~~L~~~l~~~d--~~~r~~~v~~i~~l~~~~~-----~~~~~~i 350 (478)
.+.++++.+|..++..+..++.. ...+.+++.+...+.+.. .+++.+++..++.+...++ +....++
T Consensus 442 ~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~ll 521 (1230)
T 1u6g_C 442 QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALV 521 (1230)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTH
T ss_pred HhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHH
Confidence 24566788999899988776532 356789999998888765 4888999999888876443 2334566
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHhhCC--------cc---hHHHHHHHHhhcCC-CChhhHHHHHHHHhhcccCccC
Q 011744 351 SVLLELIKIKVNYVVQEAIIVIKDIFRRYP--------NT---YESIIATLCESLDT-LDEPEAKASMIWIIGEYAERID 418 (478)
Q Consensus 351 ~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~--------~~---~~~~i~~L~~~l~~-~~~~~~~~~~~~ilGE~~~~~~ 418 (478)
+.++..+.+....++.+++..+..++.... .. .+.++..++..+.. -.+++++..+++.+|.......
T Consensus 522 p~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 522 PPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 777777888877888888888888775421 22 24556666666632 2356778888888877543321
Q ss_pred ----C-HHHHHHHHhhcC----------------------------------------CCCCHHHHHHHHHHHHHHhccC
Q 011744 419 ----N-ADELLESFLESF----------------------------------------PEEPAQVQLQLLTATVKLFLKK 453 (478)
Q Consensus 419 ----~-~~~~l~~l~~~~----------------------------------------~~~~~~vk~~il~a~~Kl~~~~ 453 (478)
. -+.++..+.+.+ ..++..+|...+.++.+++...
T Consensus 602 ~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 602 DNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp GGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred chhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 1 244444444333 3456778888888888888777
Q ss_pred CC
Q 011744 454 PT 455 (478)
Q Consensus 454 ~~ 455 (478)
++
T Consensus 682 ~~ 683 (1230)
T 1u6g_C 682 SD 683 (1230)
T ss_dssp CT
T ss_pred cc
Confidence 64
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.62 E-value=3.5e-13 Score=139.35 Aligned_cols=438 Identities=12% Similarity=0.048 Sum_probs=281.4
Q ss_pred CCchh-hHHHHHHhccCCChhHHHHHHHHHHHhcccCchHH-H----HHHHHHHhhcC-CCCHHHHHHHHHHhcCCCh-h
Q 011744 5 KDVSS-LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA-I----LAVNTFVKDSQ-DPNPLIRALAVRTMGCIRV-D 76 (478)
Q Consensus 5 ~d~~~-~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-~----l~in~l~kdL~-~~n~~vr~~AL~~l~~i~~-~ 76 (478)
.++.. +.+..++++.+++...|.-+-.++..+...++... . -++..+.+-|. ++++.++..|..+|.++.. +
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 33444 35778889999999999999999988876644321 1 24667777775 4589999999999888753 2
Q ss_pred hhhH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhhHHHHHHHHHHHh
Q 011744 77 KITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 77 e~~~-----~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~ 148 (478)
+... ..+|.+.+++.++++.+|..|+.++.++...+++ .+.+.+.++.+.+++.++++.++..++.++..+.
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 2111 3678899999999999999999999999876543 2223478899999999999999999888888776
Q ss_pred hhCCCCcccc-cHHHHHHHHHhcccCChh-hHHHHHHHHhhccCCCh--HHH--HHHHHHhhhhhcCCChHHHHHHHHHH
Q 011744 149 ENSSRPIFEI-TSHTLSKLLTALNECTEW-GQVFILDALSRYKAADA--REA--ENIVERVTPRLQHANCAVVLSAVKMI 222 (478)
Q Consensus 149 ~~~~~~~~~~-~~~~~~~Ll~~l~~~~~~-~q~~ll~~l~~~~~~~~--~~~--~~~l~~l~~~l~~~~~~V~~ea~~~i 222 (478)
..++.....+ -.+.+..+++.+.+.++. .+....++|..+...+. ... ...++.+..++.+.++.++..++.++
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L 251 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHH
Confidence 5321111000 013455555555544432 22233444444432211 111 13577788888888999999999999
Q ss_pred HHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccc---hhhc--ccee-eecc--CCChhHH
Q 011744 223 LQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI---LAHE--IKVF-FCKY--NDPIYVK 293 (478)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~---~~~~--~~~~-~~l~--~dd~~ir 293 (478)
..+....+..+.. ..+++.|+.++. +++++|..|+.+|..++..+++. +... ++.+ ..+. +++..++
T Consensus 252 ~~l~~~~~~~~~~----~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~ 327 (529)
T 1jdh_A 252 RNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHTTCTTCSCC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCChhhHHH----HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence 8876432222211 256778888886 68999999999999998765432 1111 2221 1222 3447899
Q ss_pred HHHHHHHHHhcCc--cc---HH-----HHHHHHHHhhhhcC-HHHHHHHHHHHHHHHhcchhhHH-----HHHHHHHHHh
Q 011744 294 MEKLEIMIKLASD--RN---ID-----QVLLEFKEYATEVD-VDFVRKAVRAIGRCAIKLERAAE-----RCISVLLELI 357 (478)
Q Consensus 294 ~~al~lL~~l~~~--~n---~~-----~Iv~~L~~~l~~~d-~~~r~~~v~~i~~l~~~~~~~~~-----~~i~~ll~ll 357 (478)
..++..|.+++.. ++ .. ..++.|...+++.+ ++++..++..++.++..- .... ..++.+++++
T Consensus 328 ~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L~~ll 406 (529)
T 1jdh_A 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLL 406 (529)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHHHHHH
Confidence 9999999999754 21 11 24667778887765 689999999999988532 2112 3467788888
Q ss_pred cccchhHHHH----------------------HHHHHHHHHhhCCcchH-----HHHHHHHhhcCCCChhhHHHHHHHHh
Q 011744 358 KIKVNYVVQE----------------------AIIVIKDIFRRYPNTYE-----SIIATLCESLDTLDEPEAKASMIWII 410 (478)
Q Consensus 358 ~~~~~~v~~~----------------------~~~~l~~i~~~~~~~~~-----~~i~~L~~~l~~~~~~~~~~~~~~il 410 (478)
.+++..++.+ ++..+..+.. +++.+. .++..+++.+.+- +++++..++|.+
T Consensus 407 ~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~~-~~~v~~~a~~~l 484 (529)
T 1jdh_A 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSP-IENIQRVAAGVL 484 (529)
T ss_dssp HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcCC-chHHHHHHHHHH
Confidence 7655544443 3334444432 233222 2356777777763 577899999999
Q ss_pred hcccCccCCHH-----HHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 011744 411 GEYAERIDNAD-----ELLESFLESFPEEPAQVQLQLLTATVKL 449 (478)
Q Consensus 411 GE~~~~~~~~~-----~~l~~l~~~~~~~~~~vk~~il~a~~Kl 449 (478)
++.+..-+... ..++.+.+-...++++|+.....++.++
T Consensus 485 ~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 485 CELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 99875311111 1123333334567889998888888776
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.61 E-value=2.4e-14 Score=154.86 Aligned_cols=365 Identities=11% Similarity=0.127 Sum_probs=252.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc---ccccccHHHH
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLES 124 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~ 124 (478)
++.+.+.|.++++.+|..|++.+......++....+|.+.+++.++++.||..|+.++.++....+. .....+.++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 5788899999999999999999987766677788899999999999999999999999999864321 1112257788
Q ss_pred HHHhhc-CCChhhHHHHHHHHHHHhhhCCCCccc-ccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHH-----H
Q 011744 125 LKDLIS-DNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA-----E 197 (478)
Q Consensus 125 l~~lL~-d~~~~V~~~a~~~l~~i~~~~~~~~~~-~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~-----~ 197 (478)
|..+|. +.++.++.+|+.+|..+..... .... .-.+.++.|++.+.+.++-.+...+..|..++...+... .
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~-~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~ 275 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHRE-GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA 275 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHc
Confidence 888886 4599999999999998765421 1100 012467788888888888888888888877653321111 2
Q ss_pred HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-C-ChhHHHHHHHHHHHHHhhCc--
Q 011744 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-A-EPEIQYVALRNINLIVQRRP-- 272 (478)
Q Consensus 198 ~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~-~~~ir~~aL~~l~~l~~~~~-- 272 (478)
..++.+..++.+.+..++..++.++..+. ..+++....+.. ..++.|+.++. . ....+..+..++..++....
T Consensus 276 g~v~~Lv~lL~~~~~~v~~~a~~aL~~La--~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~ 353 (780)
T 2z6g_A 276 GGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353 (780)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHH--TTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHh--cCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHH
Confidence 36778888898888888888777776654 234443333222 45667778885 3 34567788888888875321
Q ss_pred -cchhhc-ccee-eeccCCChhHHHHHHHHHHHhcCcc----cHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhh
Q 011744 273 -TILAHE-IKVF-FCKYNDPIYVKMEKLEIMIKLASDR----NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA 345 (478)
Q Consensus 273 -~~~~~~-~~~~-~~l~~dd~~ir~~al~lL~~l~~~~----n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~ 345 (478)
.++... ++.+ ..+.+.+..+++.++.+|.+++... ....+++.|...+++.++++|..++.+++.++...+..
T Consensus 354 ~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~ 433 (780)
T 2z6g_A 354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433 (780)
T ss_dssp HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 122221 2222 2344556789999999999997432 45778999999999999999999999999998754322
Q ss_pred HH-----HHHHHHHHHhcccch--hHHHHHHHHHHHHHhhCCcc---h-----HHHHHHHHhhcCCCChhhHHHHHHHHh
Q 011744 346 AE-----RCISVLLELIKIKVN--YVVQEAIIVIKDIFRRYPNT---Y-----ESIIATLCESLDTLDEPEAKASMIWII 410 (478)
Q Consensus 346 ~~-----~~i~~ll~ll~~~~~--~v~~~~~~~l~~i~~~~~~~---~-----~~~i~~L~~~l~~~~~~~~~~~~~~il 410 (478)
.. ..++.+++++...++ .++..++..++++...+++. + ...+..|++.|..-..+.++..++|++
T Consensus 434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL 513 (780)
T 2z6g_A 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513 (780)
T ss_dssp HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence 21 357888888887443 78899999999987655542 1 123667888887654457899999999
Q ss_pred hcccC
Q 011744 411 GEYAE 415 (478)
Q Consensus 411 GE~~~ 415 (478)
|..+.
T Consensus 514 ~nLa~ 518 (780)
T 2z6g_A 514 RNLAL 518 (780)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 99874
No 30
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.61 E-value=1.3e-12 Score=134.61 Aligned_cols=330 Identities=14% Similarity=0.125 Sum_probs=239.8
Q ss_pred hhHHHHHHhccCCChhHHHHHHHHHHHhcc--cCchHHHH----HHHHHHhhcC-CCCHHHHHHHHHHhcCCC--hhhhh
Q 011744 9 SLFTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKIT 79 (478)
Q Consensus 9 ~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~--~~~e~~~l----~in~l~kdL~-~~n~~vr~~AL~~l~~i~--~~e~~ 79 (478)
+-..++++.+.|+|.+.+.-+--++..++. .+|..-.+ +++.|.+-|+ ++++.++..|..+|+++. +++..
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 446899999999999999999888886653 33432111 4778888886 567899999999999873 44443
Q ss_pred HH-----HHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCCh-----hhHHHHHHHHHH
Q 011744 80 EY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-----MVVANAVAALAE 146 (478)
Q Consensus 80 ~~-----l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~~~-----~V~~~a~~~l~~ 146 (478)
.. .+|.+.++|.++++.||..|+.|+.++...+|+ .+...+.++.+..++.+.+. .+..+++.++..
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 32 578899999999999999999999999876554 33334678899999976653 356778888888
Q ss_pred HhhhC-CCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH-----HHHHHhhhhhcCCChHHHHHHHH
Q 011744 147 IEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVK 220 (478)
Q Consensus 147 i~~~~-~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~ 220 (478)
++... +...+....+.++.|.+.+...++..+....+.|..+...+.+... .+++.+..++.+.+..|+..+++
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~ 296 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence 87654 2223334456777788888888888888888888887755443322 24667788899999999999999
Q ss_pred HHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchh---hc--cce-eeeccCCChhH
Q 011744 221 MILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA---HE--IKV-FFCKYNDPIYV 292 (478)
Q Consensus 221 ~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~---~~--~~~-~~~l~~dd~~i 292 (478)
++..+.. .+++....+.. .+++.|..+++ +++++|..|..+|..++...++..+ .+ ++. +..+.+.+..+
T Consensus 297 aL~nl~~--~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 297 AIGNIVT--GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHTT--SCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHhhc--CCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 9998753 34444333333 46677778885 6889999999999999876654221 11 222 23456777899
Q ss_pred HHHHHHHHHHhcCccc---HHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHh
Q 011744 293 KMEKLEIMIKLASDRN---IDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (478)
Q Consensus 293 r~~al~lL~~l~~~~n---~~~-----Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~ 340 (478)
|+.|...|.+++...+ +.. .++-|.+.+++.|++++..++.+|..+..
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999875433 332 36778888999999999988888776654
No 31
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.61 E-value=2.6e-14 Score=135.50 Aligned_cols=251 Identities=16% Similarity=0.105 Sum_probs=156.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 126 (478)
.++.+.+.|+++|+.+|..|+..|+.+++++.++ .+.+++.|+++.||..|+.++.++... ++.++ .+++.+.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~----~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~--~l~~~L~ 96 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDAVR----LAIEFCSDKNYIRRDIGAFILGQIKIC-KKCED--NVFNILN 96 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHHH----HHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHH--HHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchHHH----HHHHHHcCCCHHHHHHHHHHHHHhccc-cccch--HHHHHHH
Confidence 4678889999999999999999999998766554 478889999999999999999987532 22222 3455665
Q ss_pred -HhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhh
Q 011744 127 -DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (478)
Q Consensus 127 -~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~ 205 (478)
.+++|+++.|+.+|+.+|..+....+. .....++.+..
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~~~-----------------------------------------~~~~~~~~L~~ 135 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKNPI-----------------------------------------YSPKIVEQSQI 135 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHCGG-----------------------------------------GHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCc-----------------------------------------ccHHHHHHHHH
Confidence 367899999999999999988653210 00123444444
Q ss_pred hhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccceeee
Q 011744 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFC 284 (478)
Q Consensus 206 ~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~ 284 (478)
.+++.++.|+..|+.++..+ ++++ .++.|..++. +++.+|+.|+.++..+....+..+..... .
T Consensus 136 ~l~d~~~~vR~~a~~aL~~~----~~~~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~---~ 200 (280)
T 1oyz_A 136 TAFDKSTNVRRATAFAISVI----NDKA--------TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVE---M 200 (280)
T ss_dssp HTTCSCHHHHHHHHHHHHTC-------C--------CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHH---H
T ss_pred HhhCCCHHHHHHHHHHHHhc----CCHH--------HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHH---H
Confidence 56666777777777766653 2222 3344555554 56667777777776664333333322211 2
Q ss_pred ccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhccc-chh
Q 011744 285 KYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK-VNY 363 (478)
Q Consensus 285 l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~-~~~ 363 (478)
+.+++..+|..|+..|..++++..+..++.. +.+. ++|..++.+++.++.. ..++.+.+++.+. ++.
T Consensus 201 l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~----l~d~--~vr~~a~~aL~~i~~~------~~~~~L~~~l~~~~~~~ 268 (280)
T 1oyz_A 201 LQDKNEEVRIEAIIGLSYRKDKRVLSVLCDE----LKKN--TVYDDIIEAAGELGDK------TLLPVLDTMLYKFDDNE 268 (280)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCGGGHHHHHHH----HTSS--SCCHHHHHHHHHHCCG------GGHHHHHHHHTTSSCCH
T ss_pred hcCCCHHHHHHHHHHHHHhCCHhhHHHHHHH----hcCc--cHHHHHHHHHHhcCch------hhhHHHHHHHhcCCCcH
Confidence 2345567777777777777766554444443 3333 3677777777766542 3455555555442 233
Q ss_pred HHHHHHHHH
Q 011744 364 VVQEAIIVI 372 (478)
Q Consensus 364 v~~~~~~~l 372 (478)
+..+++..+
T Consensus 269 ~~~~~~~~l 277 (280)
T 1oyz_A 269 IITSAIDKL 277 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 32
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.61 E-value=4.1e-13 Score=139.16 Aligned_cols=365 Identities=19% Similarity=0.169 Sum_probs=249.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCC----Chh---hhhH-HHHHHHHhhcC-CCChHHHHHHHHHHHHHHhhcccc--
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCI----RVD---KITE-YLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAEL-- 115 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~---e~~~-~l~~~i~~~l~-~~~~~VRk~A~~al~~i~~~~p~~-- 115 (478)
.++.+.+.++|+|+..+..|++.+.++ ..| ++++ .++|.+.++|. +.++.++..|+.|+.++...+++.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 357778889999999888888766443 222 2332 46888999996 567999999999999998765542
Q ss_pred -cccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcc-cccHHHHHHHHHhcccCCh-----hhHHHHHHHHhhc
Q 011744 116 -VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF-EITSHTLSKLLTALNECTE-----WGQVFILDALSRY 188 (478)
Q Consensus 116 -~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~-~~~~~~~~~Ll~~l~~~~~-----~~q~~ll~~l~~~ 188 (478)
+.+.+.+|.|..++.++++.|+..|+.+|+.|+..++...- -.-.+.+..|+..+..++. ..+..+...+..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 33458899999999999999999999999999865422111 1112456677777754332 2233445555554
Q ss_pred cCC-----ChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHH
Q 011744 189 KAA-----DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVAL 261 (478)
Q Consensus 189 ~~~-----~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL 261 (478)
+.. .......+++.+..++.+.++.|+..|+.++.++.. .+++..+.+.. .+++.|+.++. +++.++..++
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~--~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD--GPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhh--hhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 322 122335678888899999999999999999998754 23343333322 46677888886 6889999999
Q ss_pred HHHHHHHhhCccc----hhh-cccee-eeccCCChhHHHHHHHHHHHhcCc--ccHH-----HHHHHHHHhhhhcCHHHH
Q 011744 262 RNINLIVQRRPTI----LAH-EIKVF-FCKYNDPIYVKMEKLEIMIKLASD--RNID-----QVLLEFKEYATEVDVDFV 328 (478)
Q Consensus 262 ~~l~~l~~~~~~~----~~~-~~~~~-~~l~~dd~~ir~~al~lL~~l~~~--~n~~-----~Iv~~L~~~l~~~d~~~r 328 (478)
+++..++..++.. +.. -++.+ ..+.+++..+|+.|+..|.+++.. +... .+++.|...+.+.+.+++
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 9999998765432 111 13333 234567789999999999999743 2222 257778888999999999
Q ss_pred HHHHHHHHHHHhcchhhH------HHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcc--hHH---H------HHHHH
Q 011744 329 RKAVRAIGRCAIKLERAA------ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT--YES---I------IATLC 391 (478)
Q Consensus 329 ~~~v~~i~~l~~~~~~~~------~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~--~~~---~------i~~L~ 391 (478)
.+++.+|+.++....... .-.++.++++|...+..+...++..+.+++...+.. .+. . ++.+
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i- 473 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI- 473 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH-
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHH-
Confidence 999999999886432221 124788999999998888888888888876422111 111 1 1122
Q ss_pred hhcCCCChhhHHHHHHHHhhccc
Q 011744 392 ESLDTLDEPEAKASMIWIIGEYA 414 (478)
Q Consensus 392 ~~l~~~~~~~~~~~~~~ilGE~~ 414 (478)
+.|..-.+.++...+..+|-.|-
T Consensus 474 e~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 474 EALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp TGGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHC
Confidence 22333345667777777776664
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.59 E-value=5.2e-13 Score=141.78 Aligned_cols=400 Identities=11% Similarity=0.092 Sum_probs=263.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCChhh-----hh--HHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhcc--ccc
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----IT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINA--ELV 116 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e-----~~--~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~p--~~~ 116 (478)
+++.|.+-|+++++.+|..|+.+|+++...+ +. +..++.+.+.+.+ +++.+|+.|+.++..+..... ..+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 4677778888899999999999888875321 11 2567778888876 589999999999997764321 122
Q ss_pred ccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccc-cHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHH
Q 011744 117 EDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE 195 (478)
Q Consensus 117 ~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~-~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~ 195 (478)
...+.++.+..+|.++++.++..|+.+|..++.........+ -.+.++.|++.+...++-.+...+..|..+...+++.
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 234788999999999999999999999999987653221111 1356778888887776655555566676665434333
Q ss_pred HH-----HHHHHhhhhhcCCC-hHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHH
Q 011744 196 AE-----NIVERVTPRLQHAN-CAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLI 267 (478)
Q Consensus 196 ~~-----~~l~~l~~~l~~~~-~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l 267 (478)
.. ..++.+..++++.+ ..++..++.++..+.. +++....+++ .+++.++.++. .++.++..++.+|..+
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~---~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT---CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc---CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22 24566777777654 5677788888877642 3343333333 45677888886 6789999999999999
Q ss_pred HhhCccc--hhhcccee-eeccCCChhHHHHHHHHHHHhcCcc--cHHH-----HHHHHHHhhhhc-C-HHHHHHHHHHH
Q 011744 268 VQRRPTI--LAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDR--NIDQ-----VLLEFKEYATEV-D-VDFVRKAVRAI 335 (478)
Q Consensus 268 ~~~~~~~--~~~~~~~~-~~l~~dd~~ir~~al~lL~~l~~~~--n~~~-----Iv~~L~~~l~~~-d-~~~r~~~v~~i 335 (478)
+...+.. ....++.+ ..+.+++..+|..+...|.+++... +.+. .++.|...+.+. + ++++..++.++
T Consensus 252 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 8765431 22223322 3345677899999999999998643 3332 467777887663 3 79999999999
Q ss_pred HHHHhcchhhH--------HHHHHHHHHHhcccc-hhHHHHHHHHHHHHHhhCCcc----hHHHHHHHHhhcCCCChhhH
Q 011744 336 GRCAIKLERAA--------ERCISVLLELIKIKV-NYVVQEAIIVIKDIFRRYPNT----YESIIATLCESLDTLDEPEA 402 (478)
Q Consensus 336 ~~l~~~~~~~~--------~~~i~~ll~ll~~~~-~~v~~~~~~~l~~i~~~~~~~----~~~~i~~L~~~l~~~~~~~~ 402 (478)
+.++...+.+. ...++.+.++|.... +.++.++...+.++....+.. ...++..|++.+.+ .++++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR-AHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH-HHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhc-cchhh
Confidence 99986433211 135788999998875 578899999999987542221 12346667766654 24455
Q ss_pred HHHHHHHhhc--ccCccCCHH--------------------------HHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 011744 403 KASMIWIIGE--YAERIDNAD--------------------------ELLESFLESFPEEPAQVQLQLLTATVKLFL 451 (478)
Q Consensus 403 ~~~~~~ilGE--~~~~~~~~~--------------------------~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~ 451 (478)
+..++|.++. +..-. .+. ..+..+.+-+...+++++.....++.+++.
T Consensus 411 r~~a~~al~n~~~~~~~-~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGV-RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp TTC----------CCSS-CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred hhHhhhccccchhcccc-cHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 5666666665 22111 011 123445555667788999999988888763
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.59 E-value=4.9e-13 Score=138.24 Aligned_cols=403 Identities=12% Similarity=0.095 Sum_probs=262.1
Q ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChh-h----hh--HHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhcc
Q 011744 42 DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD-K----IT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINA 113 (478)
Q Consensus 42 e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~-e----~~--~~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~p 113 (478)
+...-+++.+.+-++++|+.+|..|+..|+++... + +. +..++.+.+.+.+ +++.+|+.|+.++.++.....
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 34444688888899999999999999999987532 1 11 2467778888864 589999999999999765311
Q ss_pred --cccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccc-cHHHHHHHHHhcccCChhhHHHHHHHHhhccC
Q 011744 114 --ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKA 190 (478)
Q Consensus 114 --~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~-~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~ 190 (478)
..+...+.++.+.+++.++++.++..|+.++..++.........+ -.+.++.|++.+.+.++..+......|..+..
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 122234788999999999999999999999999987653221111 23567788888877666555555566666554
Q ss_pred CChHHHH-----HHHHHhhhhhcCCCh-HHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHH
Q 011744 191 ADAREAE-----NIVERVTPRLQHANC-AVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALR 262 (478)
Q Consensus 191 ~~~~~~~-----~~l~~l~~~l~~~~~-~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~ 262 (478)
.+++... ..++.+..++++.++ .+...+..++..+.. +++....+.+ ..++.+..++. +++.++..++.
T Consensus 173 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT---STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc---CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 4333222 245566666665544 555566777766642 3343333322 56777888886 67889999999
Q ss_pred HHHHHHhhCcc--chhhcccee-eeccCCChhHHHHHHHHHHHhcCcc--cHHH-----HHHHHHHhhhh--cCHHHHHH
Q 011744 263 NINLIVQRRPT--ILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDR--NIDQ-----VLLEFKEYATE--VDVDFVRK 330 (478)
Q Consensus 263 ~l~~l~~~~~~--~~~~~~~~~-~~l~~dd~~ir~~al~lL~~l~~~~--n~~~-----Iv~~L~~~l~~--~d~~~r~~ 330 (478)
++..++...+. .....++.+ ..+.+++..+|..++..|.+++..+ +.+. .++.|.+.+.+ .+++++..
T Consensus 250 ~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~ 329 (529)
T 1jdh_A 250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329 (529)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHH
Confidence 99999976543 122223322 2345677899999999999998643 3333 46677777765 33789999
Q ss_pred HHHHHHHHHhcchhhHH--------HHHHHHHHHhcccc-hhHHHHHHHHHHHHHhhCCcchH-----HHHHHHHhhcCC
Q 011744 331 AVRAIGRCAIKLERAAE--------RCISVLLELIKIKV-NYVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESLDT 396 (478)
Q Consensus 331 ~v~~i~~l~~~~~~~~~--------~~i~~ll~ll~~~~-~~v~~~~~~~l~~i~~~~~~~~~-----~~i~~L~~~l~~ 396 (478)
++.+++.++...+.... ..++.+.+++.... +.++.++...++++... ++.+. .++..|++.+.+
T Consensus 330 a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~ 408 (529)
T 1jdh_A 330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR 408 (529)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHH
Confidence 99999999765433211 23678889998876 48889999999998754 33322 346677777764
Q ss_pred CChhhHHHHHHHHhhc--ccCccCCHHH--------------------------HHHHHhhcCCCCCHHHHHHHHHHHHH
Q 011744 397 LDEPEAKASMIWIIGE--YAERIDNADE--------------------------LLESFLESFPEEPAQVQLQLLTATVK 448 (478)
Q Consensus 397 ~~~~~~~~~~~~ilGE--~~~~~~~~~~--------------------------~l~~l~~~~~~~~~~vk~~il~a~~K 448 (478)
.+++++..++|.++. +..-. .+.+ .+..+.+-+...+++++.....++..
T Consensus 409 -~~~~v~~~a~~~l~n~~~~~~~-~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~ 486 (529)
T 1jdh_A 409 -AHQDTQRRTSMGGTQQQFVEGV-RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486 (529)
T ss_dssp -HHHHHC-----------CBTTB-CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred -HhHHHHHHHhcccCchhhhccc-cHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHH
Confidence 356678888888876 32211 1111 12344444556788899888888888
Q ss_pred Hh
Q 011744 449 LF 450 (478)
Q Consensus 449 l~ 450 (478)
+.
T Consensus 487 l~ 488 (529)
T 1jdh_A 487 LA 488 (529)
T ss_dssp HT
T ss_pred Hh
Confidence 76
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.57 E-value=3.6e-12 Score=132.00 Aligned_cols=331 Identities=14% Similarity=0.123 Sum_probs=238.4
Q ss_pred hhhHHHHHHhccCCChhHHHHHHHHHHHhccc--CchHHHH----HHHHHHhhcC-CCCHHHHHHHHHHhcCCC--hhhh
Q 011744 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKS--QPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKI 78 (478)
Q Consensus 8 ~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l----~in~l~kdL~-~~n~~vr~~AL~~l~~i~--~~e~ 78 (478)
.....++++.+.|+|+..+.-+.-++..++.. +|..-.+ +++.|.+-|+ ++++.++..|..+|+++. +++.
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 34568899999999999998888888765532 3322111 4677888885 567999999999988874 3333
Q ss_pred hH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCCh-----hhHHHHHHHHH
Q 011744 79 TE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-----MVVANAVAALA 145 (478)
Q Consensus 79 ~~-----~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~~~-----~V~~~a~~~l~ 145 (478)
.. ..+|.+..++.++++.||..|+.|++++...+|+ .+...+.++.+..++.+.+. .+..+++.++.
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 22 2578899999999999999999999999876654 33334678899999876553 34667888888
Q ss_pred HHhhhC-CCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH-----HHHHHhhhhhcCCChHHHHHHH
Q 011744 146 EIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAV 219 (478)
Q Consensus 146 ~i~~~~-~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~ 219 (478)
.++... +...+....+.++.|++.+...++..+....+.|..+.....+... .+++.+..++.+.++.|+..|+
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 887654 2223444456777788888888888888888888877654433222 2456778889999999999999
Q ss_pred HHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchh---hc--cce-eeeccCCChh
Q 011744 220 KMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA---HE--IKV-FFCKYNDPIY 291 (478)
Q Consensus 220 ~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~---~~--~~~-~~~l~~dd~~ 291 (478)
+++..+.. .+++....+.. .+++.|..+++ +++++|..|..+|..++...++... .+ ++. +..+.+.+..
T Consensus 315 ~aL~nl~~--~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 315 RAIGNIVT--GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHTT--SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHc--cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 99998753 34444333333 56778888886 6889999999999999986654221 11 222 2345677789
Q ss_pred HHHHHHHHHHHhcCcc---cHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHh
Q 011744 292 VKMEKLEIMIKLASDR---NIDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (478)
Q Consensus 292 ir~~al~lL~~l~~~~---n~~~-----Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~ 340 (478)
+|+.|...|.+++... ++.. +++-|.+.++..|++++..++.+|..+..
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999987433 3333 36678888999999999888887766543
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.57 E-value=1e-11 Score=131.77 Aligned_cols=443 Identities=12% Similarity=0.054 Sum_probs=289.6
Q ss_pred CCchhh-HHHHHHhccCCChhHHHHHHHHHHHhcccCchHHH-----HHHHHHHhhcCC-CCHHHHHHHHHHhcCCCh-h
Q 011744 5 KDVSSL-FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAI-----LAVNTFVKDSQD-PNPLIRALAVRTMGCIRV-D 76 (478)
Q Consensus 5 ~d~~~~-~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~in~l~kdL~~-~n~~vr~~AL~~l~~i~~-~ 76 (478)
-++..+ .+..++++.+++...|..+-.++..+...++.... -++..+.+-|.+ +++.+|..|..+|.++.. +
T Consensus 9 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp ---CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 334444 57888899999999999999999999877643211 236677777765 589999999988887652 2
Q ss_pred hhhH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhhHHHHHHHHHHHh
Q 011744 77 KITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 77 e~~~-----~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~ 148 (478)
+... ..++.+.+++.++++.||..|+.++.++....++. +...+.++.+..+|.+.++.++..++.+|..++
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 2111 36788999999999999999999999998765432 223478999999999999999988888888877
Q ss_pred hhCCCCccc-ccHHHHHHHHHhcccCCh-hhHHHHHHHHhhccCCChHHHH-----HHHHHhhhhhcCCChHHHHHHHHH
Q 011744 149 ENSSRPIFE-ITSHTLSKLLTALNECTE-WGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKM 221 (478)
Q Consensus 149 ~~~~~~~~~-~~~~~~~~Ll~~l~~~~~-~~q~~ll~~l~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~ 221 (478)
..+...... ...+.+..|++.+.+.+. -.+....+.|..++.. ++... ..++.+..++.+.+..++..++.+
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~ 247 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 532111110 111345666666655432 2222334444433321 11121 256777888888899999999999
Q ss_pred HHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccc----hhhc-ccee-eecc--CCChhH
Q 011744 222 ILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI----LAHE-IKVF-FCKY--NDPIYV 292 (478)
Q Consensus 222 i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~----~~~~-~~~~-~~l~--~dd~~i 292 (478)
+..+....+..+.. ..+++.|+.++. .++++|..|..+|..++...++. +... ++.+ ..+. ++...+
T Consensus 248 L~nL~~~~~~~~~~----~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v 323 (644)
T 2z6h_A 248 LRNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 323 (644)
T ss_dssp HHHHGGGCTTCCSC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhcchhhhhh----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHH
Confidence 99886432222111 256778888886 68999999999999998865431 1111 2222 1222 223689
Q ss_pred HHHHHHHHHHhcCccc----HH------HHHHHHHHhhhhcC-HHHHHHHHHHHHHHHhcchhh----HHHHHHHHHHHh
Q 011744 293 KMEKLEIMIKLASDRN----ID------QVLLEFKEYATEVD-VDFVRKAVRAIGRCAIKLERA----AERCISVLLELI 357 (478)
Q Consensus 293 r~~al~lL~~l~~~~n----~~------~Iv~~L~~~l~~~d-~~~r~~~v~~i~~l~~~~~~~----~~~~i~~ll~ll 357 (478)
+..++..|.+++.... .+ ..++.|...+++.+ +++++.++..++.++..-... ....++.+++++
T Consensus 324 ~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL 403 (644)
T 2z6h_A 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 403 (644)
T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999985321 11 35777888887664 799999999999987532111 123566777777
Q ss_pred cccch----------------------hHHHHHHHHHHHHHhhCCcchH-----HHHHHHHhhcCCCChhhHHHHHHHHh
Q 011744 358 KIKVN----------------------YVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESLDTLDEPEAKASMIWII 410 (478)
Q Consensus 358 ~~~~~----------------------~v~~~~~~~l~~i~~~~~~~~~-----~~i~~L~~~l~~~~~~~~~~~~~~il 410 (478)
...+. .+...+...+..+.. +++.+. .++..|++.+.+ .+++++..++|.+
T Consensus 404 ~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL 481 (644)
T 2z6h_A 404 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYS-PIENIQRVAAGVL 481 (644)
T ss_dssp HHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHH
T ss_pred hccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 76432 334445555555542 222222 236677787775 3577888999999
Q ss_pred hcccCccCCHH-----HHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCC
Q 011744 411 GEYAERIDNAD-----ELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 454 (478)
Q Consensus 411 GE~~~~~~~~~-----~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~ 454 (478)
++.+..-+... ..++.+.+-...+++++|.....++.+++...+
T Consensus 482 ~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 482 CELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 88765311111 113344555567899999999999999976543
No 37
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.54 E-value=2.9e-12 Score=129.83 Aligned_cols=361 Identities=13% Similarity=0.085 Sum_probs=244.2
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhccc-CchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC----------------
Q 011744 12 TDVVNCMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---------------- 74 (478)
Q Consensus 12 ~~ii~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~---------------- 74 (478)
.+++..+.|+|...|+-+--.+..+... .|+........+.. .+.++.+|..|...+.+..
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 4566677889999999999998886553 34443323333332 3357899999988777652
Q ss_pred --hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhc-cc-ccccccHHHHHHHhhcCC--ChhhHHHHHHHHHHHh
Q 011744 75 --VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFLESLKDLISDN--NPMVVANAVAALAEIE 148 (478)
Q Consensus 75 --~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~-p~-~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i~ 148 (478)
+++.-+.+...+...+.++++.| ++++.++..+.+.. |+ ..+ ++++.+...+.+. ++.++.+|+.++..+.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~--~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP--ELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 23344456666788889999999 99999999998864 63 444 6889999999888 9999999999999998
Q ss_pred hhCCCCc-ccccHHHHHHHHHhcccC--ChhhHHHHHHHHhhccCCChH------HHHHHHHHhhhhhcCCChHHHHHHH
Q 011744 149 ENSSRPI-FEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAADAR------EAENIVERVTPRLQHANCAVVLSAV 219 (478)
Q Consensus 149 ~~~~~~~-~~~~~~~~~~Ll~~l~~~--~~~~q~~ll~~l~~~~~~~~~------~~~~~l~~l~~~l~~~~~~V~~ea~ 219 (478)
+...+.. -......+..+++.+.+. ++-.+...++.+..+...-.+ ....+++.+...+.+.++.|+..++
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 7642221 222334556666666665 455666677777653221111 1123466666677788899999999
Q ss_pred HHHHHhhhhcCChHHHHHHHH-HhhhHHHHhh-cCChhHHHHHHHHHHHHHhhC-------------------c--cchh
Q 011744 220 KMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRR-------------------P--TILA 276 (478)
Q Consensus 220 ~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~~-------------------~--~~~~ 276 (478)
+++..+.... ++.+...+. .+.+.+...+ ..++++|..+++.+..++... + ..+.
T Consensus 239 ~~l~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (462)
T 1ibr_B 239 QNLVKIMSLY--YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316 (462)
T ss_dssp HHHHHHHHHC--GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHH
Confidence 9988775421 121111112 2333334444 367899999999988887642 1 1222
Q ss_pred hcc----cee-eec-------cCCChhHHHHHHHHHHHhcC---cccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhc
Q 011744 277 HEI----KVF-FCK-------YNDPIYVKMEKLEIMIKLAS---DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (478)
Q Consensus 277 ~~~----~~~-~~l-------~~dd~~ir~~al~lL~~l~~---~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~ 341 (478)
+++ +.+ ..+ .+++.++|+.+.+.|..++. +.-...+++.+..++.+.++.+|..++.+++.+++.
T Consensus 317 ~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 222 111 112 12346899999999877763 345567778777888899999999999999999874
Q ss_pred ch-----hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhC
Q 011744 342 LE-----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY 379 (478)
Q Consensus 342 ~~-----~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~ 379 (478)
.. +.....++.++..+.+....|+..+...++++....
T Consensus 397 ~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 397 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp SCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 32 223568899999999999999999999999887543
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.53 E-value=1.2e-11 Score=130.20 Aligned_cols=373 Identities=13% Similarity=0.146 Sum_probs=249.9
Q ss_pred hHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHHHHHHHHhhcCCCChHHHHHH
Q 011744 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTA 101 (478)
Q Consensus 24 ~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~~l~~~i~~~l~~~~~~VRk~A 101 (478)
.++|+.|+.+ .+++-+.... .+.+-++++|...|.++--++..+. .+|.+-.+.+.+++-+.|+||++|--|
T Consensus 58 ~l~Kli~l~~--~G~d~s~~~~----~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lA 131 (621)
T 2vgl_A 58 YVCKLLFIFL--LGHDIDFGHM----EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLA 131 (621)
T ss_dssp HHHHHHHHHH--HSCCCCSCHH----HHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHH--cCCCCchhHH----HHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3566666643 4444444433 3336788999999988888777764 478788888999999999999999999
Q ss_pred HHHHHHHHhhcccccccccHHHHHHHhh--cCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHH
Q 011744 102 AICVAKLYDINAELVEDRGFLESLKDLI--SDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQV 179 (478)
Q Consensus 102 ~~al~~i~~~~p~~~~~~~~~~~l~~lL--~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~ 179 (478)
+.+++++. .|+.++ .+.+.+.+++ .|++|-|+..|+.++..+.+..+. .... .+.+..+.+.|.+.+|-.+.
T Consensus 132 Lr~L~~i~--~~e~~~--~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~~~-~~~~~~l~~lL~d~d~~V~~ 205 (621)
T 2vgl_A 132 LHCIANVG--SREMAE--AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LVPM-GDWTSRVVHLLNDQHLGVVT 205 (621)
T ss_dssp HHHHHHHC--CHHHHH--HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GCCC-CSCHHHHHHHTTCSCHHHHH
T ss_pred HHHhhccC--CHHHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hcCc-hhHHHHHHHHhCCCCccHHH
Confidence 99999984 577776 5779999999 999999999999999999887643 2210 12345566667788888877
Q ss_pred HHHHHHhhccCCChHHHHHHH----HHhhhhhcC-------------CChHHHHHHHHHHHHhhhhcCChHHHHHHHHHh
Q 011744 180 FILDALSRYKAADAREAENIV----ERVTPRLQH-------------ANCAVVLSAVKMILQQMELITSTDVVRNLCKKM 242 (478)
Q Consensus 180 ~ll~~l~~~~~~~~~~~~~~l----~~l~~~l~~-------------~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~ 242 (478)
..+.++...++.+++....++ +.+..++.. +++-.....++.+..+.+ .++++....+. ..
T Consensus 206 ~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~-~~d~~~~~~l~-~~ 283 (621)
T 2vgl_A 206 AATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP-PEDPAVRGRLT-EC 283 (621)
T ss_dssp HHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS-CSSHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC-CCCHHHHHHHH-HH
Confidence 778887777655543221222 222222211 156667677777766543 12344333221 12
Q ss_pred hhHHHHhh----------cC--ChhHHHHHHHHHHHHHhhCccchhhccceee-eccCCChhHHHHHHHHHHHhcCcc--
Q 011744 243 APPLVTLL----------SA--EPEIQYVALRNINLIVQRRPTILAHEIKVFF-CKYNDPIYVKMEKLEIMIKLASDR-- 307 (478)
Q Consensus 243 ~~~l~~ll----------~~--~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~-~l~~dd~~ir~~al~lL~~l~~~~-- 307 (478)
...+...+ ++ .+-+.|.+.+++..+.. .|+....-...+. .+.+.|+.+|..+++.|..++...
T Consensus 284 L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~ 362 (621)
T 2vgl_A 284 LETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS 362 (621)
T ss_dssp HHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc
Confidence 22222111 11 22577888888777642 3444433333221 134567899999999999998653
Q ss_pred --cHHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchH
Q 011744 308 --NIDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE 384 (478)
Q Consensus 308 --n~~~Iv~~L~~~l~-~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~ 384 (478)
-+......++..++ +.|..+|+.++..+..++.. .+.+.++..+.+.+...+..++.+++..++.+..++|...+
T Consensus 363 ~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~ 440 (621)
T 2vgl_A 363 HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT 440 (621)
T ss_dssp HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 23444555666677 89999999999998888764 56678889999999998989999999999999988887777
Q ss_pred HHHHHHHhhcCCC---ChhhHHHHHHHHhhcc
Q 011744 385 SIIATLCESLDTL---DEPEAKASMIWIIGEY 413 (478)
Q Consensus 385 ~~i~~L~~~l~~~---~~~~~~~~~~~ilGE~ 413 (478)
..++.|++.++.- -.+++...+.-++.+.
T Consensus 441 ~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~ 472 (621)
T 2vgl_A 441 WYVDTILNLIRIAGDYVSEEVWYRVIQIVINR 472 (621)
T ss_dssp HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence 7888888777531 1233434444455443
No 39
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.53 E-value=1.2e-12 Score=123.88 Aligned_cols=192 Identities=19% Similarity=0.141 Sum_probs=133.5
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC-hhhhhHHHHHHHH-h
Q 011744 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYLCDPLQ-R 88 (478)
Q Consensus 11 ~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~-~~e~~~~l~~~i~-~ 88 (478)
....++.+.+++...|+.+.-++..+.. ++ +++.+.+-++++++.+|..|..+|+.++ .++..+.+++.+. .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--QD----AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--HH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--ch----HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 4567788999999999998888887752 23 4788889999999999999999999998 3455566666666 4
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHH
Q 011744 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (478)
Q Consensus 89 ~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~ 168 (478)
++.|+++.||..|+.++.++....|...+ ..++.+..++.|+++.|+.+|+.+++.+.... .+..|+.
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~--~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~----------~~~~L~~ 166 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSP--KIVEQSQITAFDKSTNVRRATAFAISVINDKA----------TIPLLIN 166 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHTTCSCHHHHHHHHHHHHTC---C----------CHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccH--HHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH----------HHHHHHH
Confidence 57899999999999999999876654333 57789999999999999999999998764321 2334444
Q ss_pred hcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHH
Q 011744 169 ALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (478)
Q Consensus 169 ~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 224 (478)
.+.+++++.+....+.|+.+...++ ..++.+...+++.++.|+.+|+.++..
T Consensus 167 ~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 167 LLKDPNGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4445555555545555544432221 233444444555555555555555554
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.44 E-value=4.2e-12 Score=114.86 Aligned_cols=184 Identities=22% Similarity=0.263 Sum_probs=142.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~ 127 (478)
++.+.+.|+++|+.+|..|+..|+.++.++.++. +.+.+.|+++.||..|+.++.++.. | ...+.+..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~----L~~~l~~~~~~vr~~a~~aL~~~~~--~------~~~~~L~~ 88 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP----LIKALKDEDAWVRRAAADALGQIGD--E------RAVEPLIK 88 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HHHHTTCSCHHHHHHHHHHHHHHCC--G------GGHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHH----HHHHHcCCCHHHHHHHHHHHHhhCC--H------HHHHHHHH
Confidence 6778888999999999999999999887665555 7788889999999999999998742 2 45688889
Q ss_pred hhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhh
Q 011744 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (478)
Q Consensus 128 lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l 207 (478)
++.|+++.|+..|+.++..+... ..+..|++.+.++++..+...++.|+.+... ..++.+..++
T Consensus 89 ~l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l 152 (211)
T 3ltm_A 89 ALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKAL 152 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHH
Confidence 99999999999999999887532 2456677777788888888888888887532 2456666778
Q ss_pred cCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhC
Q 011744 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR 271 (478)
Q Consensus 208 ~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~ 271 (478)
++.++.|+..|+.++..+ ++++ +.+.|..+++ +++.+|..|.++|..+....
T Consensus 153 ~d~~~~vr~~a~~aL~~~----~~~~--------~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEI----GGER--------VRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp TCSSHHHHHHHHHHHHHH----CSHH--------HHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred cCCCHHHHHHHHHHHHHh----Cchh--------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 888999999999999875 4443 3345556664 68889999999998887654
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.41 E-value=1.2e-11 Score=110.88 Aligned_cols=181 Identities=23% Similarity=0.272 Sum_probs=123.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~ 127 (478)
.+.+.+.|+++|+.+|..|+..|+.++.++.++. +.+.+.|+++.||..|+.++.++.. | ...+.+..
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~----L~~~l~~~~~~vr~~a~~~L~~~~~--~------~~~~~L~~ 83 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP----LIKALKDEDAWVRRAAADALGQIGD--E------RAVEPLIK 83 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHH----HHHHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHH----HHHHHcCCCHHHHHHHHHHHHhhCC--H------HHHHHHHH
Confidence 5667777888888888888888887776554444 6677777888888888888777632 1 34577777
Q ss_pred hhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhh
Q 011744 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (478)
Q Consensus 128 lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l 207 (478)
++.|+++.|+..|+.+|..+... ..+..+++.+.+.++..+...++.|+.+... ..++.+...+
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l 147 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKAL 147 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------GGHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHH
Confidence 77888888888888887776432 2345566666667777777777777766432 2455566677
Q ss_pred cCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHH
Q 011744 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIV 268 (478)
Q Consensus 208 ~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~ 268 (478)
.+.++.|+..|+.++..+ ++++ ..+.|..+++ +++.+|..|.++|.++.
T Consensus 148 ~d~~~~vr~~A~~aL~~~----~~~~--------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 148 KDEDGWVRQSAADALGEI----GGER--------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp TCSSHHHHHHHHHHHHHH----CSHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHh----Cchh--------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 778888888888888874 3443 2344455554 67788888888877653
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.38 E-value=2.4e-11 Score=108.90 Aligned_cols=184 Identities=21% Similarity=0.292 Sum_probs=152.1
Q ss_pred hhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHH
Q 011744 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQ 87 (478)
Q Consensus 8 ~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~ 87 (478)
...+..+++++.+++...|+.+.-++..+.+. + +++.+.+-++++|+.+|..|+..|+.++.++.++. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~----L~ 82 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--R----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LI 82 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--G----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HH
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh--h----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HH
Confidence 45668999999999999999999998887653 2 36778888899999999999999999998766555 77
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHH
Q 011744 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (478)
Q Consensus 88 ~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll 167 (478)
+.+.|+++.||..|+.++.++.. | ...+.+..++.|+++.|+..|+.++..+... ..+..|.
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~~--~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~ 144 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIGD--E------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------RAVEPLI 144 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG----------GGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--H------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----------HHHHHHH
Confidence 88999999999999999998743 2 3568889999999999999999999998532 2456677
Q ss_pred HhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHh
Q 011744 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (478)
Q Consensus 168 ~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~ 225 (478)
..+.+.+++.+...++.|+.+.. + ..++.+...+++.++.|+..|+.++..+
T Consensus 145 ~~l~d~~~~vr~~A~~aL~~~~~--~----~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 145 KALKDEDGWVRQSAADALGEIGG--E----RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCS--H----HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--h----hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 77888899999999999988753 1 3566666677888999999999988774
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.35 E-value=3.8e-11 Score=108.50 Aligned_cols=185 Identities=22% Similarity=0.294 Sum_probs=151.9
Q ss_pred hhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHH
Q 011744 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQ 87 (478)
Q Consensus 8 ~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~ 87 (478)
......+++.+.+++...|+.+--++..+... + +++.+.+-++++++.+|..|+.+|+.++.++..+. +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~--~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~----L~ 87 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--R----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LI 87 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--G----GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHH----HH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc--c----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HH
Confidence 45677888999999999999998888877652 2 36778888999999999999999999998766655 77
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHH
Q 011744 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (478)
Q Consensus 88 ~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll 167 (478)
+.+.|+++.||..|+.++.++.. + ..++.|..++.|+++.|+..|+.+|..+... ..+..|.
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~~--~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~ 149 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIGD--E------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------RAVEPLI 149 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--H------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH----------HHHHHHH
Confidence 88899999999999999998743 2 3568899999999999999999999998532 2456677
Q ss_pred HhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhh
Q 011744 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQM 226 (478)
Q Consensus 168 ~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~ 226 (478)
..+.+++++.+....+.|+.+.. ...++.+...+++.++.|+..|+.++..+.
T Consensus 150 ~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 150 KALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 77788999999999999988753 145666777788899999999999988753
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.34 E-value=1.5e-10 Score=107.19 Aligned_cols=224 Identities=21% Similarity=0.178 Sum_probs=169.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---cc
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~-----~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~~ 117 (478)
++.+.+-++++++.+|..|+..|+++. .++... ..++.+.+++.++++.||..|+.++.++...+++. +.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 567778888888888888888888773 222222 36788999999999999999999999998754432 22
Q ss_pred cccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCccc-ccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHH
Q 011744 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (478)
Q Consensus 118 ~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~-~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~ 196 (478)
..+.++.+..++.++++.++..|+.++..+....+..... ...+.+..+++.+.+.++..+...+..|..+...++...
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3467899999999999999999999999998543211111 112467788888888889999999999998876554432
Q ss_pred H-----HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHh
Q 011744 197 E-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQ 269 (478)
Q Consensus 197 ~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~ 269 (478)
. ..++.+..++.+.++.|+..|+.++..+.. .+++..+.+.+ .+++.+..++. +++.+|..|+.+|..+..
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 2 367788889999999999999999998753 34554444333 46677888886 688999999999999998
Q ss_pred hCcc
Q 011744 270 RRPT 273 (478)
Q Consensus 270 ~~~~ 273 (478)
..+.
T Consensus 242 ~~~~ 245 (252)
T 4hxt_A 242 GGWL 245 (252)
T ss_dssp TCBC
T ss_pred CCCc
Confidence 7654
No 45
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.25 E-value=8.3e-10 Score=112.00 Aligned_cols=331 Identities=11% Similarity=0.114 Sum_probs=206.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccc-
Q 011744 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI- 158 (478)
Q Consensus 83 ~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~- 158 (478)
+|.+.+.|.++++.++..|+.++.++...+++ .+...+.+|.|.++|.++++.++..|+.+|..+...++.....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 46688888899999999999999998765543 33345888999999999999999999999999986532221111
Q ss_pred cHHHHHHHHHhcc-cCChhhHHHHHHHHhhccCCC--hH-HHHHHHHHhhhhhc--------C--------CChHHHHHH
Q 011744 159 TSHTLSKLLTALN-ECTEWGQVFILDALSRYKAAD--AR-EAENIVERVTPRLQ--------H--------ANCAVVLSA 218 (478)
Q Consensus 159 ~~~~~~~Ll~~l~-~~~~~~q~~ll~~l~~~~~~~--~~-~~~~~l~~l~~~l~--------~--------~~~~V~~ea 218 (478)
-.+.++.|++.|. ..++-.+......|..+...+ .. -....++.+..++. + .++.|+..|
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 1245677888777 567777777777776655331 11 11245666777772 2 356788899
Q ss_pred HHHHHHhhhhcCChHHHHHHHH--HhhhHHHHhhcC-------ChhHHHHHHHHHHHHHhhC----cc------------
Q 011744 219 VKMILQQMELITSTDVVRNLCK--KMAPPLVTLLSA-------EPEIQYVALRNINLIVQRR----PT------------ 273 (478)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~~~~~--~~~~~l~~ll~~-------~~~ir~~aL~~l~~l~~~~----~~------------ 273 (478)
+.++.++.. +++..+.+.+ .++++|+.++.+ +..++-.++..+..++... |.
T Consensus 164 ~~aL~nLs~---~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 164 TGCLRNLSS---ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHTT---SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHcc---CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 999998853 3554444432 467778877742 3344444555555543110 00
Q ss_pred --------chh---------------------hc----------ccee-eec-cCCChhHHHHHHHHHHHhcCcc-c---
Q 011744 274 --------ILA---------------------HE----------IKVF-FCK-YNDPIYVKMEKLEIMIKLASDR-N--- 308 (478)
Q Consensus 274 --------~~~---------------------~~----------~~~~-~~l-~~dd~~ir~~al~lL~~l~~~~-n--- 308 (478)
.|. ++ ++.+ ..+ ..+++.++..|+..|.+++..+ .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 000 00 0000 011 2334677777888888886422 1
Q ss_pred -H-H------HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch---hhHHHHHHHHHHHhcccch------hHHHHHHHH
Q 011744 309 -I-D------QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE---RAAERCISVLLELIKIKVN------YVVQEAIIV 371 (478)
Q Consensus 309 -~-~------~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~---~~~~~~i~~ll~ll~~~~~------~v~~~~~~~ 371 (478)
+ + ..++.|.+.+.+.+.+++++++.+|+.++..-. ......+..++++|..++. .+...++..
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHH
Confidence 1 1 235667777788888888888888888775311 1123567778888777532 355567777
Q ss_pred HHHHHhhCCcchH-----HHHHHHHhhcCCCChhhHHHHHHHHhhcccCc
Q 011744 372 IKDIFRRYPNTYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAER 416 (478)
Q Consensus 372 l~~i~~~~~~~~~-----~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~ 416 (478)
+.+++..+++... ..++.|.+.+..-..+++++.+.|++..|...
T Consensus 401 l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 7777766665432 34666666655422466788888888877653
No 46
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.22 E-value=2.2e-10 Score=106.31 Aligned_cols=220 Identities=17% Similarity=0.159 Sum_probs=168.8
Q ss_pred CchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHH-----HHHHHHhhcCCCCHHHHHHHHHHhcCCCh--hhh
Q 011744 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKI 78 (478)
Q Consensus 6 d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~in~l~kdL~~~n~~vr~~AL~~l~~i~~--~e~ 78 (478)
+-.+.|+..++.+.|++...++-+--++..++..+++.... +++.+.+-++++++.+|..|+.+|+++.. ++.
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 44567899999999999999999988886554433332111 46788999999999999999999999864 333
Q ss_pred hH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhh
Q 011744 79 TE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 79 ~~-----~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 150 (478)
.. ..+|.+.+++.++++.||+.|+.++.++....+.. +...+.++.+.+++.+.++.|+..|+.++..+...
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 32 26788999999999999999999999997754432 33347889999999999999999999999999864
Q ss_pred CCCCccc-ccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHH-----HHHHhhhhhcCCChHHHHHHHHHHHH
Q 011744 151 SSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQ 224 (478)
Q Consensus 151 ~~~~~~~-~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~-----~l~~l~~~l~~~~~~V~~ea~~~i~~ 224 (478)
.+..... ...+.++.|++.+.+.++..+...+..|..+...++..... .++.+..++.+.++.|+.+|+.++..
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3211111 11245678888888888999999999999887655543332 56677788889999999999988876
Q ss_pred h
Q 011744 225 Q 225 (478)
Q Consensus 225 ~ 225 (478)
+
T Consensus 249 l 249 (252)
T 4db8_A 249 L 249 (252)
T ss_dssp T
T ss_pred H
Confidence 5
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.21 E-value=2.1e-10 Score=106.45 Aligned_cols=219 Identities=17% Similarity=0.132 Sum_probs=162.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCCh--hhhh-----HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---cc
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV--DKIT-----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~~--~e~~-----~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~~ 117 (478)
.+.+.+.|+++|+.+|..|+..+.++.. ++.. ...+|.+.+++.++++.+|..|+.++.++...+++. +.
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4678899999999999999999876432 2222 236788999999999999999999999998755432 22
Q ss_pred cccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCC-cccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHH
Q 011744 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (478)
Q Consensus 118 ~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~ 196 (478)
..+.++.+..++.++++.|+..|+.++..+....... ..-...+.++.|++.+.+.++..+...+..|..+...++...
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 3478899999999999999999999999997654211 011122467788888888888888889999998886554433
Q ss_pred H-----HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHH
Q 011744 197 E-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIV 268 (478)
Q Consensus 197 ~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~ 268 (478)
. ..++.+..++.+.++.|+..|+.++..+.. .+++..+.+.+ ..++.+..++. .++.+|..|+.+|..++
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 2 246678888899999999999999998753 34444443333 35666777775 57788888888777664
No 48
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.20 E-value=1.3e-09 Score=100.63 Aligned_cols=218 Identities=20% Similarity=0.161 Sum_probs=171.0
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHH-----HHHHHHhhcCCCCHHHHHHHHHHhcCCCh--hhhhH--
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITE-- 80 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~in~l~kdL~~~n~~vr~~AL~~l~~i~~--~e~~~-- 80 (478)
..+.+++++.+++...++-+..++..+...+++.... +++.+.+-++++++.+|..|+.+|+++.. ++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4577889999999999999999999998887643222 57788999999999999999999999864 33333
Q ss_pred ---HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCC
Q 011744 81 ---YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (478)
Q Consensus 81 ---~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~ 154 (478)
..++.+.+++.++++.+|..|+.++.++...+|+. +...+.++.+.+++.+.++.++..|+.++..+....+..
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 35788999999999999999999999998655532 222467899999999999999999999999997653211
Q ss_pred c-ccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH-----HHHHHhhhhhcCCChHHHHHHHHHHHHhhh
Q 011744 155 I-FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQME 227 (478)
Q Consensus 155 ~-~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~ 227 (478)
. .-...+.++.|++.+.+.++..+...+..|..++..++.... ..++.+..++++.++.++.+|+.++..+..
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 1 111124677888888888888888899999888765444332 256778888899999999999999988754
No 49
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.17 E-value=9.4e-10 Score=106.15 Aligned_cols=271 Identities=15% Similarity=0.198 Sum_probs=131.2
Q ss_pred HHHhhcCCCCHHHHHHHHH---HhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 011744 50 TFVKDSQDPNPLIRALAVR---TMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (478)
Q Consensus 50 ~l~kdL~~~n~~vr~~AL~---~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 126 (478)
.+.|-++++|...|.+.-- .++.. .++++ .+.+.+.+=++|++|++|-.|+.++++| ..|+.++ .+.+.+.
T Consensus 72 ~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I--~~~~m~~--~l~~~lk 145 (355)
T 3tjz_B 72 AMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQI--TDSTMLQ--AIERYMK 145 (355)
T ss_dssp HHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHH--CCTTTHH--HHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcC--CCHHHHH--HHHHHHH
Confidence 4457777777777665444 33343 23444 6677777777778888888888877777 4566665 4667777
Q ss_pred HhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhh
Q 011744 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (478)
Q Consensus 127 ~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~ 206 (478)
+++.|++|.|+.+|+.+...+.+.. ++....+++.+..+
T Consensus 146 ~~L~d~~pyVRk~A~l~~~kL~~~~-----------------------------------------pe~v~~~~~~l~~l 184 (355)
T 3tjz_B 146 QAIVDKVPSVSSSALVSSLHLLKCS-----------------------------------------FDVVKRWVNEAQEA 184 (355)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTTTC-----------------------------------------HHHHHTTHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHhccC-----------------------------------------HHHHHHHHHHHHHH
Confidence 7788888888877777666554332 22222345555567
Q ss_pred hcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhcCChhHHHHHHHHHHHHHhhC-ccchhhcccee-ee
Q 011744 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR-PTILAHEIKVF-FC 284 (478)
Q Consensus 207 l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ir~~aL~~l~~l~~~~-~~~~~~~~~~~-~~ 284 (478)
+.++|+.|++.|+.++..+.. .++..+ .++++.+..-.-.++-....-++.+..++..+ |..-.+.++.+ .+
T Consensus 185 l~d~n~~V~~~Al~lL~ei~~--~d~~a~----~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~ 258 (355)
T 3tjz_B 185 ASSDNIMVQYHALGLLYHVRK--NDRLAV----SKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESC 258 (355)
T ss_dssp TTCSSHHHHHHHHHHHHHHHT--TCHHHH----HHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CC
T ss_pred hcCCCccHHHHHHHHHHHHHh--hchHHH----HHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 778888888888887777642 132222 12222221100013433444445554555444 33333334433 34
Q ss_pred ccCCChhHHHHHHHHHHHhcCcc--cHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccch
Q 011744 285 KYNDPIYVKMEKLEIMIKLASDR--NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVN 362 (478)
Q Consensus 285 l~~dd~~ir~~al~lL~~l~~~~--n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~ 362 (478)
+.+.+..|--.|...+..+.+.. -....++-|..++.++|+.+|--+++.|..++.++|.....+-..+.+++++++.
T Consensus 259 L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~ 338 (355)
T 3tjz_B 259 LRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANR 338 (355)
T ss_dssp CCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------
T ss_pred HcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcH
Confidence 56667888888888887775421 1123345566777788888998999999888888888777888888888888887
Q ss_pred hHHHHHHHHHH
Q 011744 363 YVVQEAIIVIK 373 (478)
Q Consensus 363 ~v~~~~~~~l~ 373 (478)
.++.-++..+.
T Consensus 339 sI~t~Aittll 349 (355)
T 3tjz_B 339 SIATLAITTLL 349 (355)
T ss_dssp -----------
T ss_pred hHHHHHHHHhh
Confidence 77766665543
No 50
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.16 E-value=1.4e-07 Score=104.52 Aligned_cols=409 Identities=10% Similarity=0.032 Sum_probs=235.0
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC-------------hhhhh
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------------VDKIT 79 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~-------------~~e~~ 79 (478)
+++....|+|...| +--.+..+ +..|+......+.+.. .+.++.+|..|...+-+.. +++--
T Consensus 9 ~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~--~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k 83 (960)
T 1wa5_C 9 KFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAS--TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNV 83 (960)
T ss_dssp HHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHH
T ss_pred HHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHH
Confidence 44444556666665 77777766 5667765444444432 2346789999988776531 23334
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCccc-
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE- 157 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~- 157 (478)
+.+-..+...+.++++.||++++.++..|++. .|+..+ ++++.+.+++.+.++..+.+++.++.++.+........
T Consensus 84 ~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp--~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWP--TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchh--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 44555566666667799999999999999885 576555 57889999998888889999999999988753210000
Q ss_pred ccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCC--C-h------HHHHHHHHHHHHhhhh
Q 011744 158 ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHA--N-C------AVVLSAVKMILQQMEL 228 (478)
Q Consensus 158 ~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~--~-~------~V~~ea~~~i~~~~~~ 228 (478)
-..+.+..++... ..+ +++++ ..+...+++. + . .++..+++++..+..
T Consensus 162 ~~~~~l~~~l~~~--~~~-----ll~~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~- 218 (960)
T 1wa5_C 162 ELFLEIKLVLDVF--TAP-----FLNLL---------------KTVDEQITANENNKASLNILFDVLLVLIKLYYDFNC- 218 (960)
T ss_dssp HHHHHHHHHHHHH--HHH-----HHHHH---------------HHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHH--HHH-----HHHHH---------------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 0000111111110 000 11111 1111112211 1 0 111223333332211
Q ss_pred cCChHHHHHHHHHhhhHHHHhhc-------CC---------hhHHHHHHHHHHHHHhhCccchhhccceee-----ec--
Q 011744 229 ITSTDVVRNLCKKMAPPLVTLLS-------AE---------PEIQYVALRNINLIVQRRPTILAHEIKVFF-----CK-- 285 (478)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~ll~-------~~---------~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~-----~l-- 285 (478)
..-|+.+...+....+.+..++. .+ ..+|..+++.+..+...+++.|.+|+..+. .+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~ 298 (960)
T 1wa5_C 219 QDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTS 298 (960)
T ss_dssp SCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11233332222223333333332 11 136778899999999999988877654221 11
Q ss_pred ---cCCChhHHHHHHHHHHHhcCc----------ccHHHHH-HHHHHhhh----h-----cC--------------HHHH
Q 011744 286 ---YNDPIYVKMEKLEIMIKLASD----------RNIDQVL-LEFKEYAT----E-----VD--------------VDFV 328 (478)
Q Consensus 286 ---~~dd~~ir~~al~lL~~l~~~----------~n~~~Iv-~~L~~~l~----~-----~d--------------~~~r 328 (478)
...+..++..+++.+..++.. ..+..++ ..+..++. + .| ...|
T Consensus 299 ~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R 378 (960)
T 1wa5_C 299 ISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRR 378 (960)
T ss_dssp CCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHH
T ss_pred cCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcH
Confidence 123467899999999887643 2244455 33334442 1 11 1356
Q ss_pred HHHHHHHHHHHhcchh-hHHHHHHHHHHHhc------ccchhHHHHHHHHHHHHHhhC-----C--------cchHHHHH
Q 011744 329 RKAVRAIGRCAIKLER-AAERCISVLLELIK------IKVNYVVQEAIIVIKDIFRRY-----P--------NTYESIIA 388 (478)
Q Consensus 329 ~~~v~~i~~l~~~~~~-~~~~~i~~ll~ll~------~~~~~v~~~~~~~l~~i~~~~-----~--------~~~~~~i~ 388 (478)
..+...+..++..+++ .....+..+.+.+. ..+|..++.++..++.+..+. + +.......
T Consensus 379 ~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~ 458 (960)
T 1wa5_C 379 RACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK 458 (960)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH
Confidence 6677778888887753 22344455555555 456778888899888886421 1 11111223
Q ss_pred HHHhhcCCC--ChhhHHHHHHHHhhcccCccCC--HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 011744 389 TLCESLDTL--DEPEAKASMIWIIGEYAERIDN--ADELLESFLESFPEEPAQVQLQLLTATVKLFL 451 (478)
Q Consensus 389 ~L~~~l~~~--~~~~~~~~~~~ilGE~~~~~~~--~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~ 451 (478)
.+...+.+- ..|-++..++|.+|.|++.+.. -..++..+++.+.+.+..||.....|+..++.
T Consensus 459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 344444442 2677899999999999987632 23556667778888889999999999999886
No 51
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.13 E-value=2.3e-08 Score=102.95 Aligned_cols=334 Identities=12% Similarity=0.062 Sum_probs=215.8
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhh-CCCCc
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN-SSRPI 155 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~-~~~~~ 155 (478)
..-+|.+.++|.+.++.++..|+.++.++...+++ .+...+.+|.|..+|.+.++.|+..|+.+|..++.. +..+.
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 34467788899999999999999999998865443 233457889999999999999999999999999863 21111
Q ss_pred cc-ccHHHHHHHHHhccc-CChhhHHHHHHHHhhccCCChHHH----HHHHHHhhhhh------------------cCCC
Q 011744 156 FE-ITSHTLSKLLTALNE-CTEWGQVFILDALSRYKAADAREA----ENIVERVTPRL------------------QHAN 211 (478)
Q Consensus 156 ~~-~~~~~~~~Ll~~l~~-~~~~~q~~ll~~l~~~~~~~~~~~----~~~l~~l~~~l------------------~~~~ 211 (478)
.. .-.+.++.|++.|.. .++-.|-.....|..+... ++.. ...++.+..++ .+.+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhccccccccccccccccccccc
Confidence 11 112456677777764 3555555544444433322 1111 12334444433 1235
Q ss_pred hHHHHHHHHHHHHhhhhcCChHHHHHHHH--HhhhHHHHhhc-------CChhHHHHHHHHHHHHHhhC----ccc--hh
Q 011744 212 CAVVLSAVKMILQQMELITSTDVVRNLCK--KMAPPLVTLLS-------AEPEIQYVALRNINLIVQRR----PTI--LA 276 (478)
Q Consensus 212 ~~V~~ea~~~i~~~~~~~~~~~~~~~~~~--~~~~~l~~ll~-------~~~~ir~~aL~~l~~l~~~~----~~~--~~ 276 (478)
..|+..|+.++.++.. .+++.-+.+.+ .++++|+.++. .+....-.|+.+|..++... |.. +.
T Consensus 206 ~~V~~nAa~~L~NLs~--~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSS--ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp HHHHHHHHHHHHHHTS--SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred HHHHHHHHHHHHHHhc--CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 7899999999998752 23333333322 23456777663 23456677788887776431 110 00
Q ss_pred --------------hc-c---------ce-eeec-cCCChhHHHHHHHHHHHhcCcc-----cH------HHHHHHHHHh
Q 011744 277 --------------HE-I---------KV-FFCK-YNDPIYVKMEKLEIMIKLASDR-----NI------DQVLLEFKEY 319 (478)
Q Consensus 277 --------------~~-~---------~~-~~~l-~~dd~~ir~~al~lL~~l~~~~-----n~------~~Iv~~L~~~ 319 (478)
+. + +. +..+ ...+..++..|+..|.++|..+ .+ ...++.|...
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 00 1 11 1122 2456789999999999997432 11 2447788888
Q ss_pred hhhcCHHHHHHHHHHHHHHHhcch---hhHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHhhCCcchHH---
Q 011744 320 ATEVDVDFVRKAVRAIGRCAIKLE---RAAERCISVLLELIKIKV--------NYVVQEAIIVIKDIFRRYPNTYES--- 385 (478)
Q Consensus 320 l~~~d~~~r~~~v~~i~~l~~~~~---~~~~~~i~~ll~ll~~~~--------~~v~~~~~~~l~~i~~~~~~~~~~--- 385 (478)
+...+..+++.++.+|+.++..-. ......+..++.+|..+. ..+...+...+.+++..+++.+..
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~ 443 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE 443 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999986421 123467788888888763 345677888888888777765443
Q ss_pred --HHHHHHhhcCCC-ChhhHHHHHHHHhhcccCc
Q 011744 386 --IIATLCESLDTL-DEPEAKASMIWIIGEYAER 416 (478)
Q Consensus 386 --~i~~L~~~l~~~-~~~~~~~~~~~ilGE~~~~ 416 (478)
.+..|++.++.- ..+.+.+.++|++......
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 477788888753 2567888999999887653
No 52
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.10 E-value=1.5e-07 Score=100.74 Aligned_cols=284 Identities=11% Similarity=0.122 Sum_probs=186.9
Q ss_pred HHHHHhhcC---CCCHHHHHHHHHHhcCCChh---hhhHHHHHHHHhhcCCCC--------hHHHHHHHHHHHHHHhhcc
Q 011744 48 VNTFVKDSQ---DPNPLIRALAVRTMGCIRVD---KITEYLCDPLQRCLKDDD--------PYVRKTAAICVAKLYDINA 113 (478)
Q Consensus 48 in~l~kdL~---~~n~~vr~~AL~~l~~i~~~---e~~~~l~~~i~~~l~~~~--------~~VRk~A~~al~~i~~~~p 113 (478)
...|.+-|. +.++++|+-|+-.+|-+... +..+. +...+.+++ +.+|..|+++++-++--+.
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~l----L~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDY----LKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHH----HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHH----HHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 455566665 78999999999999876532 33344 444444433 7999999999998865332
Q ss_pred cccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhccc--CChhhHHHHHHHHhhccCC
Q 011744 114 ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE--CTEWGQVFILDALSRYKAA 191 (478)
Q Consensus 114 ~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~--~~~~~q~~ll~~l~~~~~~ 191 (478)
+ .+..+.|.+.+.|.+..++..|..+++-+.-.++. ..++..|++.+.+ .++|..- +.-.|+.....
T Consensus 470 ~----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~-aalgLGll~~g 538 (963)
T 4ady_A 470 N----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRG-LAVGLALINYG 538 (963)
T ss_dssp C----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHH-HHHHHHHHTTT
T ss_pred C----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHH-HHHHHHhhhCC
Confidence 1 14568888888888877777788888876443332 2345556554322 2334332 33334433333
Q ss_pred ChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhh-c-CChhHHHHHHHHHHHHHh
Q 011744 192 DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-S-AEPEIQYVALRNINLIVQ 269 (478)
Q Consensus 192 ~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~-~~~~ir~~aL~~l~~l~~ 269 (478)
.++....+++.+ ..+.++.+++.++-+++--.-..+++..++ .|...+ + .+.++|..|...|+.+..
T Consensus 539 ~~e~~~~li~~L---~~~~dp~vRygaa~alglAyaGTGn~~aIq--------~LL~~~~~d~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 539 RQELADDLITKM---LASDESLLRYGGAFTIALAYAGTGNNSAVK--------RLLHVAVSDSNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp CGGGGHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTSCCHHHHH--------HHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHhcCCCCHHHHH--------HHHHHhccCCcHHHHHHHHHHHHhhcc
Confidence 344444444443 336789999999887753222235554433 333333 3 567899999999999887
Q ss_pred hCccchhhccceeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch----hh
Q 011744 270 RRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RA 345 (478)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~----~~ 345 (478)
..|+.+...+..+ ..+.++.+|+.+.-.|..++..+.-..+++.|..+.+|.|.++|+.++.+++.++..-. +.
T Consensus 608 g~~e~v~rlv~~L--~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 608 RDYTTVPRIVQLL--SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp SSCSSHHHHTTTG--GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred CCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 7776544433322 23557899999999999887655567888888888899999999999999999886532 34
Q ss_pred HHHHHHHHHHHhcc
Q 011744 346 AERCISVLLELIKI 359 (478)
Q Consensus 346 ~~~~i~~ll~ll~~ 359 (478)
...+...+.+...+
T Consensus 686 va~~l~~L~~~~~d 699 (963)
T 4ady_A 686 VADINKNFLSVITN 699 (963)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 56677777777765
No 53
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.08 E-value=2.3e-08 Score=100.41 Aligned_cols=333 Identities=10% Similarity=0.055 Sum_probs=200.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCChhhh----hH-HHHHHHHhhcCCC------------ChHHHHHHHHHHHHHH
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI----TE-YLCDPLQRCLKDD------------DPYVRKTAAICVAKLY 109 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~----~~-~l~~~i~~~l~~~------------~~~VRk~A~~al~~i~ 109 (478)
.+..+...+.+.|+.-..-.|-.++. +++. .+ .++|.+.+++.+. ++.+|.+|+.|+..|.
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKDDMSRTLLAMSS--SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp ------------CCHHHHHHHHHHHS--STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHc--CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 35667777777766643333334433 2332 22 3677888888763 2799999999999999
Q ss_pred hhccccccc---ccHH----------HHHHHhhcCCC--h-----hhH-------HHHHHHHHHHhhhCCCCccc-ccHH
Q 011744 110 DINAELVED---RGFL----------ESLKDLISDNN--P-----MVV-------ANAVAALAEIEENSSRPIFE-ITSH 161 (478)
Q Consensus 110 ~~~p~~~~~---~~~~----------~~l~~lL~d~~--~-----~V~-------~~a~~~l~~i~~~~~~~~~~-~~~~ 161 (478)
...|+.... .+.+ +.+.+++.... . .|+ .+|+.+|..+.... ..+-. .-.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~-e~R~~i~~~G 189 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELG 189 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH-HHHHHHHHTT
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCH-HHHHHHHHCC
Confidence 988875431 1222 33344444321 1 143 38889998885431 11100 1124
Q ss_pred HHHHHHHhccc-----------CChhhHHHHHHHHhhccCCChHHH------HHHHHHhhhhhcCCChHHHHHHHHHHHH
Q 011744 162 TLSKLLTALNE-----------CTEWGQVFILDALSRYKAADAREA------ENIVERVTPRLQHANCAVVLSAVKMILQ 224 (478)
Q Consensus 162 ~~~~Ll~~l~~-----------~~~~~q~~ll~~l~~~~~~~~~~~------~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 224 (478)
.++.|++.+.. .++-.|....+.|..++..++... ...++.+..++.+.++.|+..|+.++.+
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 269 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 55566665521 123456677788888776554222 2347888889999999999999999998
Q ss_pred hhhhcCChHHHHHHHH-HhhhHHHHhh-c-CChhHHHHHHHHHHHHHhhCc----cchhh--cccee-eeccCCC-h---
Q 011744 225 QMELITSTDVVRNLCK-KMAPPLVTLL-S-AEPEIQYVALRNINLIVQRRP----TILAH--EIKVF-FCKYNDP-I--- 290 (478)
Q Consensus 225 ~~~~~~~~~~~~~~~~-~~~~~l~~ll-~-~~~~ir~~aL~~l~~l~~~~~----~~~~~--~~~~~-~~l~~dd-~--- 290 (478)
+... .+++....+.+ ..+++|+.++ + .++.++..|+.++..++...+ .+... -++.+ ..+.+.+ .
T Consensus 270 Ls~~-~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~ 348 (458)
T 3nmz_A 270 LSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348 (458)
T ss_dssp HTSS-CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTT
T ss_pred HhcC-CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchH
Confidence 7421 13333333333 5678899875 4 578899999999999987432 22211 13322 1222222 1
Q ss_pred hHHHHHHHHHHHhc-----CcccHHHH-----HHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhH-----HHHHHHHHH
Q 011744 291 YVKMEKLEIMIKLA-----SDRNIDQV-----LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA-----ERCISVLLE 355 (478)
Q Consensus 291 ~ir~~al~lL~~l~-----~~~n~~~I-----v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~-----~~~i~~ll~ 355 (478)
.++..|..+|.+++ ++++.+.+ ++.|...+++.+.+++++++.+|+.++...+... .-.++.+.+
T Consensus 349 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~ 428 (458)
T 3nmz_A 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 428 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 48888888888876 44554443 5677788888888899999999988885433222 234678888
Q ss_pred HhcccchhHHHHHHHHHHHHHhhCCcch
Q 011744 356 LIKIKVNYVVQEAIIVIKDIFRRYPNTY 383 (478)
Q Consensus 356 ll~~~~~~v~~~~~~~l~~i~~~~~~~~ 383 (478)
++..++..++..+...+.++..++|..+
T Consensus 429 LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 429 LIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 8888777888888888888888777643
No 54
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.07 E-value=2.9e-09 Score=95.76 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=118.5
Q ss_pred CCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHH-----HHHHHHhhcCCCCHHHHHHHHHHhcCCC--h
Q 011744 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIR--V 75 (478)
Q Consensus 3 ~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~in~l~kdL~~~n~~vr~~AL~~l~~i~--~ 75 (478)
.|++....++.+++++.+++...+.-+..++..+...+++.... +++.+.+-|+++++.+|..|+.+|+++. +
T Consensus 6 ~~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp -------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ccccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 46777788899999999999999999999999998776664322 4678899999999999999999999985 3
Q ss_pred hhhhH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 011744 76 DKITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (478)
Q Consensus 76 ~e~~~-----~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 147 (478)
++... ..+|.+.+++.++++.||+.|+.++.++...+++. +.+.+.++.+.+++.+.++.++..|+.++..+
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33332 25788999999999999999999999998765543 22347899999999999999999999999998
Q ss_pred hhh
Q 011744 148 EEN 150 (478)
Q Consensus 148 ~~~ 150 (478)
+..
T Consensus 166 ~~~ 168 (210)
T 4db6_A 166 ASG 168 (210)
T ss_dssp HTS
T ss_pred HcC
Confidence 764
No 55
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.02 E-value=1.7e-07 Score=104.01 Aligned_cols=433 Identities=12% Similarity=0.092 Sum_probs=235.7
Q ss_pred HHHHh-ccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC-------hhhhhHHHHH
Q 011744 13 DVVNC-MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKITEYLCD 84 (478)
Q Consensus 13 ~ii~l-~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~-------~~e~~~~l~~ 84 (478)
++++. ..+++.+.|+-+.-++..+ +.+|+....+..-+. ++.++.+|-.|+..+-+.. +++-.+.+-.
T Consensus 28 ~~l~~l~~~~~~~~r~~A~~~L~~~-~~~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~ 103 (963)
T 2x19_B 28 KALHQLYYDPNIENKNLAQKWLMQA-QVSPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKA 103 (963)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHH-HHSTTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH-hcCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHH
Confidence 44443 5568999999999998875 445665444444333 3678999999999887632 2223333333
Q ss_pred HHHhhcCC---CChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcC-----CChhhHHHHHHHHHHHhhhCCCC-
Q 011744 85 PLQRCLKD---DDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISD-----NNPMVVANAVAALAEIEENSSRP- 154 (478)
Q Consensus 85 ~i~~~l~~---~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d-----~~~~V~~~a~~~l~~i~~~~~~~- 154 (478)
.+.+.+.+ .++.||.+.+.++..+.+. +|+..+ ++++.+..++.. .++..+..++..|..+.++....
T Consensus 104 ~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~ 181 (963)
T 2x19_B 104 QLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP--CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR 181 (963)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccc--hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhccc
Confidence 34444432 4699999999999999885 466555 577888877765 25556777777777666432110
Q ss_pred ------------cccccHHHHHHHHHhcccC--ChhhHHHHHHHHhhccCC--ChHHHHHHHHHhhhhhcCCChHHHHHH
Q 011744 155 ------------IFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAA--DAREAENIVERVTPRLQHANCAVVLSA 218 (478)
Q Consensus 155 ------------~~~~~~~~~~~Ll~~l~~~--~~~~q~~ll~~l~~~~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea 218 (478)
....+..++.-+.+.+.+. +.|....+++.+..+.+- .......+++.+...+. ++.++..|
T Consensus 182 ~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~~a 259 (963)
T 2x19_B 182 LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFDSS 259 (963)
T ss_dssp C---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHHHH
Confidence 0111112222222223222 236666677777544321 11111345666555553 45666777
Q ss_pred HHHHHHhhhhcCCh---HHHHHHHHHhhhH---HHHhh-cCChhHHHHHHHHHHHHHhhCccchh------hcc----ce
Q 011744 219 VKMILQQMELITST---DVVRNLCKKMAPP---LVTLL-SAEPEIQYVALRNINLIVQRRPTILA------HEI----KV 281 (478)
Q Consensus 219 ~~~i~~~~~~~~~~---~~~~~~~~~~~~~---l~~ll-~~~~~ir~~aL~~l~~l~~~~~~~~~------~~~----~~ 281 (478)
+.++..+...-..+ ..+..+...+... +.... ..|.+......+.+..++..++..+. +++ ..
T Consensus 260 ~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 339 (963)
T 2x19_B 260 VEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNM 339 (963)
T ss_dssp HHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHH
Confidence 77777664311111 2222222211111 11111 23444444445666666655544332 121 21
Q ss_pred e-eeccC-----CChhHHHHHHHHHHHhcCc-----------------ccHHHHHHHHHHhhhhcC--------------
Q 011744 282 F-FCKYN-----DPIYVKMEKLEIMIKLASD-----------------RNIDQVLLEFKEYATEVD-------------- 324 (478)
Q Consensus 282 ~-~~l~~-----dd~~ir~~al~lL~~l~~~-----------------~n~~~Iv~~L~~~l~~~d-------------- 324 (478)
+ .+..+ .+..+...+++.+..++++ .-+..+++.++..+..++
T Consensus 340 ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~ 419 (963)
T 2x19_B 340 IMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQ 419 (963)
T ss_dssp HHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHH
T ss_pred HHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHH
Confidence 1 12222 2345677788887776651 112233444443332111
Q ss_pred -HHHHHHHHHHHHHHHhcchh-hHHHHHHHHHHHh----cccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCC-
Q 011744 325 -VDFVRKAVRAIGRCAIKLER-AAERCISVLLELI----KIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTL- 397 (478)
Q Consensus 325 -~~~r~~~v~~i~~l~~~~~~-~~~~~i~~ll~ll----~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~- 397 (478)
.++|+.+...+..++...+. ....+.+.+...+ ...++..++.++..++.+...-++.....+..+++.+...
T Consensus 420 ~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~ 499 (963)
T 2x19_B 420 FRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRIS 499 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCC
Confidence 13456666666666655442 2233344444445 4456777888888888887653322222344455444322
Q ss_pred -ChhhHHHHHHHHhhcccCccCC-H---HHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCC
Q 011744 398 -DEPEAKASMIWIIGEYAERIDN-A---DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (478)
Q Consensus 398 -~~~~~~~~~~~ilGE~~~~~~~-~---~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~ 455 (478)
.+|.++..++|++|.|++.+.. + +.++..+.+.+.. +.|+.....++.+++...+.
T Consensus 500 ~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~ 560 (963)
T 2x19_B 500 ISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY 560 (963)
T ss_dssp CCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence 2577899999999999876532 2 2344555555533 88999999999999876543
No 56
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.02 E-value=8.1e-09 Score=95.30 Aligned_cols=200 Identities=18% Similarity=0.209 Sum_probs=146.5
Q ss_pred hhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhc-CCChhhHHHHHHHHHHHhhhCCCC
Q 011744 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRP 154 (478)
Q Consensus 78 ~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~-d~~~~V~~~a~~~l~~i~~~~~~~ 154 (478)
+...+-+.+.+.+.|+++.+|+.|+.++..+...+|..... .++.+.+..++. |.|+.|+..|+.++..++...+..
T Consensus 12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~ 91 (242)
T 2qk2_A 12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR 91 (242)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 33444455788889999999999999999998875543211 256788888994 999999999999999998765433
Q ss_pred cccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChH-
Q 011744 155 IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTD- 233 (478)
Q Consensus 155 ~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~- 233 (478)
+.......++.+++.+.+..+-.+......+..+..... ...+++.+...+++.++.|+.+++..+..+.... .|+
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~-~~~~ 168 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRT-QPTA 168 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-CGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc-CCCC
Confidence 333445577788888888877776666666655543321 3568888888999999999999999999864322 122
Q ss_pred HHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc-cchhhccc
Q 011744 234 VVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP-TILAHEIK 280 (478)
Q Consensus 234 ~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~-~~~~~~~~ 280 (478)
........+++.+..+++ +++++|-.|..++..++..-+ +.+.+++.
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 122233467888888886 689999999999999987643 34666654
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.99 E-value=1.5e-08 Score=90.98 Aligned_cols=188 Identities=19% Similarity=0.147 Sum_probs=138.7
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcc
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~ 156 (478)
+...|.+..++.++++.+|..|+.++.++...+++. +.+.+.++.+.++|.++++.++..|+.++..+...++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 455677999999999999999999999998655532 22346789999999999999999999999999754321111
Q ss_pred c-ccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHH-----HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcC
Q 011744 157 E-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (478)
Q Consensus 157 ~-~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~ 230 (478)
. .-.+.++.+++.+.+.++-.+......|..+...++.... ..++.+..++++.++.|+..|+.++..+.. .
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~--~ 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--G 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--S
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--C
Confidence 1 1123567788888888888888888999888765544332 356788888999999999999999998753 2
Q ss_pred ChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHh
Q 011744 231 STDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQ 269 (478)
Q Consensus 231 ~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~ 269 (478)
+++....+.+ ..++.|..++. +++.+|..|+.+|..++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 3444333333 45667777775 678888888888887753
No 58
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.95 E-value=1.9e-07 Score=96.14 Aligned_cols=330 Identities=15% Similarity=0.083 Sum_probs=214.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhh----hhH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHhh-cc---cc
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRTMGCIR--VDK----ITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---EL 115 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e----~~~-~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~-~p---~~ 115 (478)
.++.+.+-|+++++.++..|..+|.++. +++ +++ ..+|.+.++|.++++.|+..|+.|+.++... ++ ..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 3677788899999999988888887764 222 222 3578999999999999999999999999763 23 33
Q ss_pred cccccHHHHHHHhhcC-CChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcc------------------cCChh
Q 011744 116 VEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN------------------ECTEW 176 (478)
Q Consensus 116 ~~~~~~~~~l~~lL~d-~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~------------------~~~~~ 176 (478)
+...+.++.|..+|.+ .+..++..|..+|..+.... ........+.++.|++.+. ..++-
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 4445889999999986 67889999999998887643 2222233344555555441 11334
Q ss_pred hHHHHHHHHhhccCCChHHHHH------HHHHhhhhhcC------CChHHHHHHHHHHHHhhhhc----CC---------
Q 011744 177 GQVFILDALSRYKAADAREAEN------IVERVTPRLQH------ANCAVVLSAVKMILQQMELI----TS--------- 231 (478)
Q Consensus 177 ~q~~ll~~l~~~~~~~~~~~~~------~l~~l~~~l~~------~~~~V~~ea~~~i~~~~~~~----~~--------- 231 (478)
.+.....+|..+...+++.... +++.+...+++ .+...+-.|+.++-++.... +.
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 4555677777766544332222 23445554442 45567777777776543110 00
Q ss_pred ----------hHHHHHHH-HHhhhHHHHhhc--CChhHHHHHHHHHHHHHhhCc---c----chhhc--ccee-eeccCC
Q 011744 232 ----------TDVVRNLC-KKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRP---T----ILAHE--IKVF-FCKYND 288 (478)
Q Consensus 232 ----------~~~~~~~~-~~~~~~l~~ll~--~~~~ir~~aL~~l~~l~~~~~---~----~~~~~--~~~~-~~l~~d 288 (478)
+..++.+. ..+++.|+.++. .++.++-.|..+|..++.... . .+..+ ++.+ ..+.++
T Consensus 288 ~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~ 367 (584)
T 3l6x_A 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367 (584)
T ss_dssp --------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS
T ss_pred cccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC
Confidence 00000000 134566777883 578999999999999986431 1 22211 3333 345677
Q ss_pred ChhHHHHHHHHHHHhcCcc-cHH----HHHHHHHHhhhhc--------CHHHHHHHHHHHHHHHhcchhhHH-----HHH
Q 011744 289 PIYVKMEKLEIMIKLASDR-NID----QVLLEFKEYATEV--------DVDFVRKAVRAIGRCAIKLERAAE-----RCI 350 (478)
Q Consensus 289 d~~ir~~al~lL~~l~~~~-n~~----~Iv~~L~~~l~~~--------d~~~r~~~v~~i~~l~~~~~~~~~-----~~i 350 (478)
+..+++.|...|.+|+... |.. ..++.|...+... +.+++..++.+++.++..-+...+ -.+
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I 447 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Confidence 7899999999999998553 333 2467777777654 467888899999888755433332 347
Q ss_pred HHHHHHhccc--chhHHHHHHHHHHHHHh
Q 011744 351 SVLLELIKIK--VNYVVQEAIIVIKDIFR 377 (478)
Q Consensus 351 ~~ll~ll~~~--~~~v~~~~~~~l~~i~~ 377 (478)
+.+.+++... ...+...+..++..+..
T Consensus 448 ~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 448 EKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 8889998876 56677888888888764
No 59
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.93 E-value=4.3e-07 Score=91.94 Aligned_cols=294 Identities=14% Similarity=0.130 Sum_probs=198.6
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHH-----HHHHHhhcC-CCCHHHHHHHHHHhcCCCh-----hhh
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA-----VNTFVKDSQ-DPNPLIRALAVRTMGCIRV-----DKI 78 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~-----in~l~kdL~-~~n~~vr~~AL~~l~~i~~-----~e~ 78 (478)
+.+..++++.+++...++-+--++..+...+++.-..+ ++.|.+-|. ++++.++..|..+|+++.. ..+
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i 124 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHH
Confidence 56788999999999999999999999988766654444 568888888 8899999999998887642 124
Q ss_pred hHHHHHHHHhhc--------CC--------CChHHHHHHHHHHHHHHhhccc---ccccc-cHHHHHHHhhcC------C
Q 011744 79 TEYLCDPLQRCL--------KD--------DDPYVRKTAAICVAKLYDINAE---LVEDR-GFLESLKDLISD------N 132 (478)
Q Consensus 79 ~~~l~~~i~~~l--------~~--------~~~~VRk~A~~al~~i~~~~p~---~~~~~-~~~~~l~~lL~d------~ 132 (478)
++..+|.+.+++ .+ .++.|++.|+.++..+... |+ .+.+. +.++.|..++.+ .
T Consensus 125 ~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 203 (457)
T 1xm9_A 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRC 203 (457)
T ss_dssp HHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCT
T ss_pred HhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCC
Confidence 446788888888 22 3567888999999999864 43 23333 788888888864 4
Q ss_pred ChhhHHHHHHHHHHHhhh----C---------------------------------------------CCCc--ccccHH
Q 011744 133 NPMVVANAVAALAEIEEN----S---------------------------------------------SRPI--FEITSH 161 (478)
Q Consensus 133 ~~~V~~~a~~~l~~i~~~----~---------------------------------------------~~~~--~~~~~~ 161 (478)
+..++.+|+.++..+... . .+.. +-...+
T Consensus 204 ~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (457)
T 1xm9_A 204 DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283 (457)
T ss_dssp TCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHH
T ss_pred chHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcc
Confidence 556777776666554310 0 0000 111234
Q ss_pred HHHHHHHhcccC-ChhhHHHHHHHHhhccCCChH---HH-------HHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcC
Q 011744 162 TLSKLLTALNEC-TEWGQVFILDALSRYKAADAR---EA-------ENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (478)
Q Consensus 162 ~~~~Ll~~l~~~-~~~~q~~ll~~l~~~~~~~~~---~~-------~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~ 230 (478)
.++.++..|... ++..+-...+.|..++..+.. .. ...++.+..++++.+..|+.+|+.++.+++.
T Consensus 284 ~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~--- 360 (457)
T 1xm9_A 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--- 360 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT---
T ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc---
Confidence 556666655433 566666677788777643211 11 1346778889999999999999999998854
Q ss_pred ChHHHHHHHHHhhhHHHHhhc-CC------hhHHHHHHHHHHHHHhhCccchhhc-----ccee-eeccCC-ChhHHHHH
Q 011744 231 STDVVRNLCKKMAPPLVTLLS-AE------PEIQYVALRNINLIVQRRPTILAHE-----IKVF-FCKYND-PIYVKMEK 296 (478)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~ll~-~~------~~ir~~aL~~l~~l~~~~~~~~~~~-----~~~~-~~l~~d-d~~ir~~a 296 (478)
+++....+....+++|+.+|. .+ .++...++.++..+...+++..+.. ++.+ ..+.++ +..+++.|
T Consensus 361 ~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A 440 (457)
T 1xm9_A 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440 (457)
T ss_dssp SGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence 333333334578889999996 33 3578899999999987665432211 2222 233455 57788888
Q ss_pred HHHHHHhcCcc
Q 011744 297 LEIMIKLASDR 307 (478)
Q Consensus 297 l~lL~~l~~~~ 307 (478)
..+|.++..++
T Consensus 441 ~~~L~~~~~~~ 451 (457)
T 1xm9_A 441 RLLLSDMWSSK 451 (457)
T ss_dssp HHHHHTTSSST
T ss_pred HHHHHHHHcch
Confidence 88888876543
No 60
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.90 E-value=5.9e-08 Score=89.78 Aligned_cols=201 Identities=13% Similarity=0.166 Sum_probs=144.5
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHH-HHhhccccc--cc--ccHHHHHHHhh-cCCChhhHHHHHHHHHHHhhhCC-C
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAK-LYDINAELV--ED--RGFLESLKDLI-SDNNPMVVANAVAALAEIEENSS-R 153 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~-i~~~~p~~~--~~--~~~~~~l~~lL-~d~~~~V~~~a~~~l~~i~~~~~-~ 153 (478)
.+-+.....+.++++.-|+.|+.++.. +...+|+.. .. .++++.+.+.+ +|.|+.|+..|+.++..++..-. +
T Consensus 16 kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~ 95 (249)
T 2qk1_A 16 KLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP 95 (249)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred hCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 333446677899999999999999999 887667655 21 25678888888 89999999999999999997655 3
Q ss_pred Ccc-cccHHHHHHHHHhcccCChhhHHH---HHHHHhhccCCChHH--HHHHHHHhhhhhcCCChHHHHHHHHHHHHhhh
Q 011744 154 PIF-EITSHTLSKLLTALNECTEWGQVF---ILDALSRYKAADARE--AENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (478)
Q Consensus 154 ~~~-~~~~~~~~~Ll~~l~~~~~~~q~~---ll~~l~~~~~~~~~~--~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~ 227 (478)
.+- ......+..++..+.+..+-.+-. .+..+.......... ...+++.+...+++.++.|+.+++.++..+..
T Consensus 96 ~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 333 455567888888888766554433 233333322111111 44688888899999999999999999998875
Q ss_pred hcCC-hHHHHHHH-HHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc-cchhhccce
Q 011744 228 LITS-TDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP-TILAHEIKV 281 (478)
Q Consensus 228 ~~~~-~~~~~~~~-~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~-~~~~~~~~~ 281 (478)
..+. |+.+...+ ..+++.+..+++ +++++|-.|.+++..+...-. +.+.+|+..
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4332 13333445 567888888886 689999999999999987643 457777654
No 61
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.80 E-value=4e-07 Score=101.05 Aligned_cols=436 Identities=10% Similarity=0.058 Sum_probs=230.0
Q ss_pred HHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC-------hhhhhHHHHHHHH
Q 011744 15 VNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKITEYLCDPLQ 87 (478)
Q Consensus 15 i~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~-------~~e~~~~l~~~i~ 87 (478)
++.+.+++...|+-+.-++..+ +.+|+....+..-+.. +.++.+|-.|+.++-+.. +++-.+.+-..+.
T Consensus 13 l~~~~~~d~~~r~~A~~~L~~~-~~~p~~w~~~~~lL~~---~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll 88 (971)
T 2x1g_F 13 VVSFYRSNSQNQAITHEWLTDA-EASPQAWQFSWQLMQL---GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKIL 88 (971)
T ss_dssp HHHHHTSTTTC----CHHHHHT-TTSTHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHH
Confidence 3334567888899998888875 4557754444433332 578999999999887531 2233333333444
Q ss_pred hhcCC---CChHHHHHHHHHHHHHHhhc-ccccccccHHHHHHHhhcCC------ChhhHHHHHHHHHHHhhh----CCC
Q 011744 88 RCLKD---DDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDN------NPMVVANAVAALAEIEEN----SSR 153 (478)
Q Consensus 88 ~~l~~---~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~------~~~V~~~a~~~l~~i~~~----~~~ 153 (478)
+.+.+ .++.||.+.+.++..+.+.+ | ..+ ++++.+..++... ++..+..++..+..+.++ ...
T Consensus 89 ~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~ 165 (971)
T 2x1g_F 89 ESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWP--GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTS 165 (971)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHccc-ccc--HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcH
Confidence 44432 36899999999999998863 4 333 3556666666543 566677777777766543 111
Q ss_pred Ccc----cccHHHHHHHHH----hccc-CCh------h-hHHHHHHHHhhccC--C-ChHHHHHHHHHhhhhh-------
Q 011744 154 PIF----EITSHTLSKLLT----ALNE-CTE------W-GQVFILDALSRYKA--A-DAREAENIVERVTPRL------- 207 (478)
Q Consensus 154 ~~~----~~~~~~~~~Ll~----~l~~-~~~------~-~q~~ll~~l~~~~~--~-~~~~~~~~l~~l~~~l------- 207 (478)
... ......+..++. .+.. .++ | .....++.+..+.. . +......+++.+.. +
T Consensus 166 ~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~ 244 (971)
T 2x1g_F 166 VKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWP 244 (971)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccc
Confidence 100 001111112211 1111 111 2 34446666654322 1 11122345555544 3
Q ss_pred ---------cCCChHHHHHHHHHHHHhhhhcCC----hHHHHHHHHHhhhHHHH----h---hc-CCh---hHHHHHHHH
Q 011744 208 ---------QHANCAVVLSAVKMILQQMELITS----TDVVRNLCKKMAPPLVT----L---LS-AEP---EIQYVALRN 263 (478)
Q Consensus 208 ---------~~~~~~V~~ea~~~i~~~~~~~~~----~~~~~~~~~~~~~~l~~----l---l~-~~~---~ir~~aL~~ 263 (478)
.+.++.++-.|+.++..+... ++ ...+. .+.+.+.. + .. .|. +......+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~-~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l 319 (971)
T 2x1g_F 245 CIHAGDGCMTADENELAESCLKTMVNIIIQ-PDCHNYPKTAF----VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYML 319 (971)
T ss_dssp SCC---CCCCHHHHHHHHHHHHHHHHHHHC-SGGGGCHHHHH----HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHH
T ss_pred cccccccccCcCCcHHHHHHHHHHHHHHcC-ccccccHHHHH----HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHH
Confidence 013467777888888776531 11 12222 23332222 1 12 343 677777888
Q ss_pred HHHHHhhCccchh-----------hcc----cee-eecc-----CCChhHHHHHHHHHHHhcCc----------c-----
Q 011744 264 INLIVQRRPTILA-----------HEI----KVF-FCKY-----NDPIYVKMEKLEIMIKLASD----------R----- 307 (478)
Q Consensus 264 l~~l~~~~~~~~~-----------~~~----~~~-~~l~-----~dd~~ir~~al~lL~~l~~~----------~----- 307 (478)
+..++..+++.+. +++ ..+ .+.. .++..++..+++.++.++++ .
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~ 399 (971)
T 2x1g_F 320 FVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEY 399 (971)
T ss_dssp HHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 8888876665443 222 211 1221 23567888999988776541 1
Q ss_pred ---cHHHHHHHHHHhhhhc--------C-------HHHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHhcc-----cchh
Q 011744 308 ---NIDQVLLEFKEYATEV--------D-------VDFVRKAVRAIGRCAIKLE-RAAERCISVLLELIKI-----KVNY 363 (478)
Q Consensus 308 ---n~~~Iv~~L~~~l~~~--------d-------~~~r~~~v~~i~~l~~~~~-~~~~~~i~~ll~ll~~-----~~~~ 363 (478)
-+..+++.++.-+..+ | .++|+.+...+..++...+ .......+.+...+.. .++.
T Consensus 400 ~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~ 479 (971)
T 2x1g_F 400 IKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWT 479 (971)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHH
Confidence 1222344444333211 1 2467777777777777665 2223334444444443 4667
Q ss_pred HHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCC----ChhhHHHHHHHHhhcccCccCC----HHHHHHHHhhcCCCCC
Q 011744 364 VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTL----DEPEAKASMIWIIGEYAERIDN----ADELLESFLESFPEEP 435 (478)
Q Consensus 364 v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~----~~~~~~~~~~~ilGE~~~~~~~----~~~~l~~l~~~~~~~~ 435 (478)
.++.++..++.+...-++.....+..+++.+..+ .+|.++..++|.+|.|++.+.. -+.++..+...+ +
T Consensus 480 ~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~-- 556 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N-- 556 (971)
T ss_dssp HHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--
Confidence 7888888888876543322122333444333111 2677899999999999877643 234555555554 2
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q 011744 436 AQVQLQLLTATVKLFLKKPTEGPQQMIQVTLK 467 (478)
Q Consensus 436 ~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~ 467 (478)
+.|+...-.|+.+++...+.+ +.+.+..+++
T Consensus 557 ~~v~~~A~~al~~l~~~~~~~-l~p~~~~ll~ 587 (971)
T 2x1g_F 557 SSMSAQATLGLKELCRDCQLQ-LKPYADPLLN 587 (971)
T ss_dssp SSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHh-ccccHHHHHH
Confidence 678888888999998655443 5555544443
No 62
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.76 E-value=1.1e-06 Score=74.42 Aligned_cols=209 Identities=14% Similarity=0.182 Sum_probs=140.4
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCC--hhhHHHHHHHHhhccCCChHHHH
Q 011744 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECT--EWGQVFILDALSRYKAADAREAE 197 (478)
Q Consensus 120 ~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~--~~~q~~ll~~l~~~~~~~~~~~~ 197 (478)
.+.+.+..+|+|.=..|+.+|+..+..+....+ ++..+.+.+|+-.+.... |..| .+-+.++......++...
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltq-eIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQ-EIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHH-HHHHHHhHHHHhCHHHHH
Confidence 577889999988888999999999999876542 344566666666554321 2222 223333333323344444
Q ss_pred HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchh
Q 011744 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA 276 (478)
Q Consensus 198 ~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~ 276 (478)
..++.+.....-.++-++..-..++..+.. .+|++... +..-+..+++ ++..-|.+||.-+.-++.+++..+.
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIar--anP~l~~~----v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~ 180 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAK--ANPMLMAS----IVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN 180 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHH--HCHHHHHH----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHH--hChHHHHH----HHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccC
Confidence 555555555555677777777777776653 36776654 3344455664 5777788888888888888888888
Q ss_pred hccceee-eccCCChhHHHHHHHHHHHhcCcc-cHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 011744 277 HEIKVFF-CKYNDPIYVKMEKLEIMIKLASDR-NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCA 339 (478)
Q Consensus 277 ~~~~~~~-~l~~dd~~ir~~al~lL~~l~~~~-n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~ 339 (478)
|+++-++ .++++|.-+|..|.+.|.+++..+ .+..++..-++-+.|.+..+..+....+++++
T Consensus 181 PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 181 PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 8887554 455667888999999998887432 26667777677777777777777777777665
No 63
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.76 E-value=2.3e-09 Score=88.96 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=91.1
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhc
Q 011744 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (478)
Q Consensus 11 ~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l 90 (478)
...+++++.+++...|+.+..++..+.+.. ++.|.+-++++|+.+|..|+.+|+.++.++.++. +.+.+
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-------~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~----L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDEA-------FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEP----LIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSSTT-------HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHH----HHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCchH-------HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHH
Confidence 356677889999999988877666554331 4788888999999999999999999998765544 77777
Q ss_pred CCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHH
Q 011744 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (478)
Q Consensus 91 ~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~ 146 (478)
.|+++.||..|+.++.++.. + ..++.|..+++|+|+.|+..|+.+|.+
T Consensus 83 ~d~~~~VR~~A~~aL~~~~~--~------~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIGG--E------RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHCS--H------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHHHhCc--H------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 89999999999999998752 2 456889999999999999999988754
No 64
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.76 E-value=2.5e-07 Score=81.69 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=135.5
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCC-cccccHHHHHHHHHhcccCChhhHHHHHHHHhhcc---CCChHH
Q 011744 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---AADARE 195 (478)
Q Consensus 120 ~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~---~~~~~~ 195 (478)
+.+..+..+|.|+|+.|+.+|+.++.++.+..++. ........+..+++.+.+.++-..++.+++++.+- |-++..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 35688899999999999999999999988764321 12234456777777777888888888888887653 445666
Q ss_pred HHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhC--c
Q 011744 196 AENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR--P 272 (478)
Q Consensus 196 ~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~--~ 272 (478)
...+.+.+...+.+.+.....+|+..++.+.. .++. .++.+.+..+++ +++.++-+|++.+..++... |
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv--~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKLQP--LEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB--SCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcCCc--ccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 67788888889999999999999999998732 2221 245556667774 79999999999999999864 4
Q ss_pred cchhhcccee-eeccCCChhHHHHHHHHHHHhcCc
Q 011744 273 TILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASD 306 (478)
Q Consensus 273 ~~~~~~~~~~-~~l~~dd~~ir~~al~lL~~l~~~ 306 (478)
+.+.+-.+.+ ..+.++|+.++.+|++.+..+.+.
T Consensus 185 ~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 185 GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 5555544433 345678999999999999988754
No 65
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.75 E-value=4.2e-07 Score=88.42 Aligned_cols=217 Identities=12% Similarity=0.095 Sum_probs=152.0
Q ss_pred CCHHHHHHHHHHhcCCC--h---hhhh---HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh-cc---cccccccHHHHH
Q 011744 58 PNPLIRALAVRTMGCIR--V---DKIT---EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---ELVEDRGFLESL 125 (478)
Q Consensus 58 ~n~~vr~~AL~~l~~i~--~---~e~~---~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~-~p---~~~~~~~~~~~l 125 (478)
.++.++..|..+|.++. + +..+ ...+|.+.++|.++++.||..|+.++..+... ++ +.+.+.+.++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 45778888888887764 2 2222 34589999999999999999999999998753 22 334445788999
Q ss_pred HHh-hcCCChhhHHHHHHHHHHHhhhCCCCcccc--cHHHHHHHHHhcccCC--hh--hHHHHHHHHhhccC---CChHH
Q 011744 126 KDL-ISDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECT--EW--GQVFILDALSRYKA---ADARE 195 (478)
Q Consensus 126 ~~l-L~d~~~~V~~~a~~~l~~i~~~~~~~~~~~--~~~~~~~Ll~~l~~~~--~~--~q~~ll~~l~~~~~---~~~~~ 195 (478)
.++ +...++.++..|+.++..+........... ..+.++.|++.+...+ +| .+......|..+.. .+++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 996 566789999999999988876331111111 3467777877776543 23 33334444444332 23333
Q ss_pred HH-----HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHH
Q 011744 196 AE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIV 268 (478)
Q Consensus 196 ~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~ 268 (478)
.. ..++.+..++++.+..++.+|+.++..+.. .+++..+.+.+ .++++|+.++. +++.+|..|..+|..++
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 22 256788889999999999999999998752 35555554443 56788999996 68899999999999999
Q ss_pred hhCccchh
Q 011744 269 QRRPTILA 276 (478)
Q Consensus 269 ~~~~~~~~ 276 (478)
...|...+
T Consensus 334 ~~~~~~~~ 341 (354)
T 3nmw_A 334 ANRPAKYK 341 (354)
T ss_dssp TTCCGGGC
T ss_pred cCCHHHHh
Confidence 98776543
No 66
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1.8e-06 Score=90.56 Aligned_cols=315 Identities=11% Similarity=0.098 Sum_probs=200.6
Q ss_pred HHHHHHHHHHhcCCCh-----hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc----ccccccHHHHHHHhhc
Q 011744 60 PLIRALAVRTMGCIRV-----DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE----LVEDRGFLESLKDLIS 130 (478)
Q Consensus 60 ~~vr~~AL~~l~~i~~-----~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~----~~~~~~~~~~l~~lL~ 130 (478)
+.+|..|+-.|++++. ..-+..+.+.+.+.+.+++...|+-|+.+|..+-. +|+ ...+.++++.|.++++
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk 386 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIK 386 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHh
Confidence 6889999998888652 12345677888888888766669999999986643 342 3334577888999888
Q ss_pred C-CChhhHHHHHHHHHHHhhhCCCCcc---------c------------------------------ccHHHHHHHHHhc
Q 011744 131 D-NNPMVVANAVAALAEIEENSSRPIF---------E------------------------------ITSHTLSKLLTAL 170 (478)
Q Consensus 131 d-~~~~V~~~a~~~l~~i~~~~~~~~~---------~------------------------------~~~~~~~~Ll~~l 170 (478)
+ .+..+.+.++..+..+....+...- . .-.+.+..|++.+
T Consensus 387 ~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll 466 (778)
T 3opb_A 387 SQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREM 466 (778)
T ss_dssp TTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHG
T ss_pred CCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 5 7788999999999887764321000 0 0012233344434
Q ss_pred ccCChhhHHHHHHHHhhccCCChHHHH-----HHHHHhhhhhcCCChH---HHHHHHHHHHHhhhhcCChHHHHH--HHH
Q 011744 171 NECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCA---VVLSAVKMILQQMELITSTDVVRN--LCK 240 (478)
Q Consensus 171 ~~~~~~~q~~ll~~l~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~---V~~ea~~~i~~~~~~~~~~~~~~~--~~~ 240 (478)
...++-.+..+.++|..+... ++... ..++.+..++.+.... ++..|+.++.++.- ..+|+..-. -..
T Consensus 467 ~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli-s~np~~~f~~~~~~ 544 (778)
T 3opb_A 467 HNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI-FTNPGLIFKKYSAL 544 (778)
T ss_dssp GGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH-TSCHHHHSSSSCST
T ss_pred cCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh-cCCHHHHcCCCccc
Confidence 445555666666666666532 22222 2455666677665433 78889999888752 123433100 001
Q ss_pred HhhhHHHHhhcCChh---------------HHHHHHHHHHHHHhhCc-------c-chhh--cccee-eeccCCChhHHH
Q 011744 241 KMAPPLVTLLSAEPE---------------IQYVALRNINLIVQRRP-------T-ILAH--EIKVF-FCKYNDPIYVKM 294 (478)
Q Consensus 241 ~~~~~l~~ll~~~~~---------------ir~~aL~~l~~l~~~~~-------~-~~~~--~~~~~-~~l~~dd~~ir~ 294 (478)
.++++|+.||..+++ -+|.|+.+|..++.... . ++.. .++.+ ..+.++...||+
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vrr 624 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHH
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHH
Confidence 467889999873222 28999999999998641 1 2332 24433 344566788999
Q ss_pred HHHHHHHHhcCcc-cH-HHH-----------HHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHH------HHHHHHHH
Q 011744 295 EKLEIMIKLASDR-NI-DQV-----------LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAE------RCISVLLE 355 (478)
Q Consensus 295 ~al~lL~~l~~~~-n~-~~I-----------v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~------~~i~~ll~ 355 (478)
.|.+++.+|+... .+ +.+ ++-|..++...|.+.|+.+..+++.++..++.... ..++.++.
T Consensus 625 AA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~ 704 (778)
T 3opb_A 625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQ 704 (778)
T ss_dssp HHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHH
Confidence 9999999887433 22 122 55677888888999999999999888765554332 34567777
Q ss_pred Hhcc--cchhHHHHHHHHHHHHHh
Q 011744 356 LIKI--KVNYVVQEAIIVIKDIFR 377 (478)
Q Consensus 356 ll~~--~~~~v~~~~~~~l~~i~~ 377 (478)
++.+ .+..++..++..+.++..
T Consensus 705 lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 705 VFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHhccCCCHHHHHHHHHHHHHHHH
Confidence 7777 667777777777777774
No 67
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.72 E-value=9.9e-09 Score=85.06 Aligned_cols=117 Identities=18% Similarity=0.236 Sum_probs=90.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~ 127 (478)
++.+.+.|+|+|+.+|..|+..|+.++.+. .+.+.+++.|+++.||..|+.++.++.. + ..++.|..
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~------~a~~~L~~ 80 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--E------RAVEPLIK 80 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--H------HHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--H------HHHHHHHH
Confidence 577889999999999999999999998775 3668899999999999999999998753 1 35688889
Q ss_pred hhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhh
Q 011744 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSR 187 (478)
Q Consensus 128 lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~ 187 (478)
++.|+|+.|+..|+.+|..+... ..+..|.+.+.+.+++.+....+.|..
T Consensus 81 ~L~d~~~~VR~~A~~aL~~~~~~----------~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 81 LLEDDSGFVRSGAARSLEQIGGE----------RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHCCTHHHHHHHHHHHHHCSH----------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 99999999999999999988532 345667777777788887777666653
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.69 E-value=2.1e-05 Score=84.30 Aligned_cols=329 Identities=12% Similarity=0.045 Sum_probs=206.6
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhc---CCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHH
Q 011744 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS---DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKL 166 (478)
Q Consensus 90 l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~---d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L 166 (478)
+....++.+-.|+.+++-|+..+.+ +-...|.+.|. ..++.++..|+.+++-+...... ..+..|
T Consensus 367 l~k~~~~~k~sA~aSLGlIh~g~~~-----~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL 434 (963)
T 4ady_A 367 LGKAQNWAKFTATASLGVIHKGNLL-----EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYL 434 (963)
T ss_dssp HHHCCTHHHHHHHHHHHHHTSSCTT-----THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHH
T ss_pred hhccchHHHHHHHHHhhhhccCchH-----HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHH
Confidence 3334567788888999988886654 23466666665 56788999999999988654321 234444
Q ss_pred HHhcccCC--------hhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHH
Q 011744 167 LTALNECT--------EWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNL 238 (478)
Q Consensus 167 l~~l~~~~--------~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~ 238 (478)
...+.+.+ +-.+.-..--|+........ .++++.+.+.+.+.+..++..|+-.++.+.-..++++.++
T Consensus 435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~-- 510 (963)
T 4ady_A 435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIH-- 510 (963)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHH--
T ss_pred HHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHH--
Confidence 44444333 33444333344442211111 1456666777776666556566666665421123444443
Q ss_pred HHHhhhHHHHh-hc-CChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHHHH-hcCcccHHHHHHH
Q 011744 239 CKKMAPPLVTL-LS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIK-LASDRNIDQVLLE 315 (478)
Q Consensus 239 ~~~~~~~l~~l-l~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~-l~~~~n~~~Iv~~ 315 (478)
.|+.. .+ .+..+|..+.-.|+.+....++.+..-+..+. .++++.+|..+.-.+.- -+...| ...++.
T Consensus 511 ------~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~--~~~dp~vRygaa~alglAyaGTGn-~~aIq~ 581 (963)
T 4ady_A 511 ------DMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKML--ASDESLLRYGGAFTIALAYAGTGN-NSAVKR 581 (963)
T ss_dssp ------HHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTSCC-HHHHHH
T ss_pred ------HHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhcCCCC-HHHHHH
Confidence 22222 23 35567777888888887666666555444321 34668899888777642 233334 345666
Q ss_pred HHHhh-hhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhh
Q 011744 316 FKEYA-TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLE-LIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCES 393 (478)
Q Consensus 316 L~~~l-~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~-ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~ 393 (478)
|++.+ .+.+.++|+.++.+|+.+...-+. .+.-++. +..+.++.++..+...++.+...+|. ..++..|...
T Consensus 582 LL~~~~~d~~d~VRraAViaLGlI~~g~~e----~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~~aid~L~~L 655 (963)
T 4ady_A 582 LLHVAVSDSNDDVRRAAVIALGFVLLRDYT----TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--QSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTSSSCS----SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--HHHHHHHHHH
T ss_pred HHHHhccCCcHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--HHHHHHHHHH
Confidence 77665 466788999999999987654332 2333444 44567788999999999988766663 5677777776
Q ss_pred cCCCChhhHHHHHHHHhhcccCccCC-----HHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHh
Q 011744 394 LDTLDEPEAKASMIWIIGEYAERIDN-----ADELLESFLESFP--EEPAQVQLQLLTATVKLF 450 (478)
Q Consensus 394 l~~~~~~~~~~~~~~ilGE~~~~~~~-----~~~~l~~l~~~~~--~~~~~vk~~il~a~~Kl~ 450 (478)
..| .++.+++.++..+|..+--..+ ...+++.+.+.+. .+++.+|....-|.+.+.
T Consensus 656 ~~D-~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 656 TKD-PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HTC-SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred ccC-CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 666 4788999999999998754333 3466777766554 367888888888887774
No 69
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.69 E-value=6.5e-07 Score=84.77 Aligned_cols=174 Identities=17% Similarity=0.117 Sum_probs=125.3
Q ss_pred HHHHHHHHHhcCCC-hhhhhHH-----HHHHHHh-hcCCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhc
Q 011744 61 LIRALAVRTMGCIR-VDKITEY-----LCDPLQR-CLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLIS 130 (478)
Q Consensus 61 ~vr~~AL~~l~~i~-~~e~~~~-----l~~~i~~-~l~~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~ 130 (478)
.-|..|+..|..+. +.+.... .+|.+.. +|.++++.||..|+.+++.+...+|+. +-+.+.++.|..+|.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 45666777666653 2232222 3567777 999999999999999999999877642 333478899999997
Q ss_pred -CCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcC
Q 011744 131 -DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQH 209 (478)
Q Consensus 131 -d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~ 209 (478)
++++.|+..|+.++..++...++ ....+.. ...++.+..++++
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~--------~~~~~~~----------------------------~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEA--------GLLQFLR----------------------------LDGFSVLMRAMQQ 178 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHH--------HHHHHHH----------------------------TTHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcH--------HHHHHHH----------------------------CCCHHHHHHHHcC
Confidence 56889999999999988754310 1111110 0245666677788
Q ss_pred CChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCc
Q 011744 210 ANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP 272 (478)
Q Consensus 210 ~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~ 272 (478)
.+..|+.+|+.++.++... +++..+.+++ .++++|+.++. +++.++..|+.+|..++...+
T Consensus 179 ~d~~v~~~A~~aLs~L~~~--~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 179 QVQKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHhC--ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 8999999999999987642 4555444444 67888999996 689999999999999987543
No 70
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.66 E-value=8.1e-07 Score=89.23 Aligned_cols=216 Identities=12% Similarity=0.096 Sum_probs=150.1
Q ss_pred CCHHHHHHHHHHhcCCC--h---hhhh---HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh-cc---cccccccHHHHH
Q 011744 58 PNPLIRALAVRTMGCIR--V---DKIT---EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---ELVEDRGFLESL 125 (478)
Q Consensus 58 ~n~~vr~~AL~~l~~i~--~---~e~~---~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~-~p---~~~~~~~~~~~l 125 (478)
.++.++..|..+|.++. + +..+ ...+|.+.++|.++++.|+..|+.++..+... ++ +.+.+.+.++.|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 45677888877777763 2 2222 34589999999999999999999999998653 22 334445788999
Q ss_pred HHh-hcCCChhhHHHHHHHHHHHhhhCCCCcccc--cHHHHHHHHHhcccCC--hh--hHHHHHHHHhhccC---CChHH
Q 011744 126 KDL-ISDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECT--EW--GQVFILDALSRYKA---ADARE 195 (478)
Q Consensus 126 ~~l-L~d~~~~V~~~a~~~l~~i~~~~~~~~~~~--~~~~~~~Ll~~l~~~~--~~--~q~~ll~~l~~~~~---~~~~~ 195 (478)
.++ +...++.++..|+.++..+..........+ ..+.++.|++.+...+ +| .+......|..+.. .+++.
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 996 456788999999999988876331111111 2456777777776543 34 34444444444332 23333
Q ss_pred HH-----HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHH
Q 011744 196 AE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIV 268 (478)
Q Consensus 196 ~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~ 268 (478)
.. ..++.+..++.+.+..++.+|+.++..+.. .+++..+.+.+ .++++|+.++. +++.+|..|..+|..++
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS--SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 32 246778888999999999999999998752 35555554444 56788999995 68899999999999999
Q ss_pred hhCccch
Q 011744 269 QRRPTIL 275 (478)
Q Consensus 269 ~~~~~~~ 275 (478)
..+|..+
T Consensus 450 ~~~p~ky 456 (458)
T 3nmz_A 450 ANRPAKY 456 (458)
T ss_dssp TCCSCC-
T ss_pred cCCHhhh
Confidence 9877543
No 71
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.64 E-value=6.3e-05 Score=79.01 Aligned_cols=382 Identities=15% Similarity=0.185 Sum_probs=218.3
Q ss_pred HHHHHHHHhcccCchHHHH------HHHHHHhhc-CCCCHHHHHHHHHHhcCCChhh-----hhHHHHHHHHhhcCCCCh
Q 011744 28 LVYLYLINYAKSQPDLAIL------AVNTFVKDS-QDPNPLIRALAVRTMGCIRVDK-----ITEYLCDPLQRCLKDDDP 95 (478)
Q Consensus 28 l~yl~l~~~~~~~~e~~~l------~in~l~kdL-~~~n~~vr~~AL~~l~~i~~~e-----~~~~l~~~i~~~l~~~~~ 95 (478)
.+.-++..+++--|+++-- ..+.+..-+ ..+++.+....|+.++.-+..+ +.+...+.+...+.+ .
T Consensus 231 ~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~ 308 (778)
T 3opb_A 231 IIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--E 308 (778)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--G
T ss_pred HHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--H
Confidence 3444455556665553211 133444444 3455666667777666544332 234556777777754 6
Q ss_pred HHHHHHHHHHHHHHhhcc-cccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC-CCcccccHHHHHHHHHhccc-
Q 011744 96 YVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS-RPIFEITSHTLSKLLTALNE- 172 (478)
Q Consensus 96 ~VRk~A~~al~~i~~~~p-~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~-~~~~~~~~~~~~~Ll~~l~~- 172 (478)
.+|..|+.++.|+..... ......++.+.+.+.|.+.+...+..|+..|.++..... ...+.-..+.+..|++.+..
T Consensus 309 ~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~ 388 (778)
T 3opb_A 309 DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQ 388 (778)
T ss_dssp GGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCC
Confidence 899999999999876432 111112577888888887776668889998888754321 01122233456667766653
Q ss_pred CChhhHHHHHHHHhhcc---CC-------------------------Ch-H----HH-H---------HHHHHhhhhhcC
Q 011744 173 CTEWGQVFILDALSRYK---AA-------------------------DA-R----EA-E---------NIVERVTPRLQH 209 (478)
Q Consensus 173 ~~~~~q~~ll~~l~~~~---~~-------------------------~~-~----~~-~---------~~l~~l~~~l~~ 209 (478)
.+.-...-++.+|.++. +. +. . .. . ..++.+..++++
T Consensus 389 ~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S 468 (778)
T 3opb_A 389 KMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN 468 (778)
T ss_dssp CCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG
T ss_pred CCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 23223333334443322 11 00 0 00 0 145556677888
Q ss_pred CChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhcCC-hh---HHHHHHHHHHHHHhh-Cccc-hhhc----
Q 011744 210 ANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLSAE-PE---IQYVALRNINLIVQR-RPTI-LAHE---- 278 (478)
Q Consensus 210 ~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~-~~---ir~~aL~~l~~l~~~-~~~~-~~~~---- 278 (478)
.++.++-.|++++..+.. +++....+++ ..+++|+.++.+. .. .|..|.++|.++... +|.. |..+
T Consensus 469 ~s~~~re~A~~aL~nLS~---d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~ 545 (778)
T 3opb_A 469 LSPNCKQQVVRIIYNITR---SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALN 545 (778)
T ss_dssp SCHHHHHHHHHHHHHHHT---SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTT
T ss_pred CCHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcccc
Confidence 999999999999999853 4444444444 5568888888632 32 799999999999844 4543 2211
Q ss_pred -cceee-eccC-CCh-------------hHHHHHHHHHHHhcCcc-c----H-HH------HHHHHHHhhhhcCHHHHHH
Q 011744 279 -IKVFF-CKYN-DPI-------------YVKMEKLEIMIKLASDR-N----I-DQ------VLLEFKEYATEVDVDFVRK 330 (478)
Q Consensus 279 -~~~~~-~l~~-dd~-------------~ir~~al~lL~~l~~~~-n----~-~~------Iv~~L~~~l~~~d~~~r~~ 330 (478)
++.+. .+.. ++. --+..|+..|.+|+... | + .. .++.|.+++.+.+..+|+.
T Consensus 546 aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrA 625 (778)
T 3opb_A 546 AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRS 625 (778)
T ss_dssp HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHH
T ss_pred chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHH
Confidence 12121 1121 111 11668888888887542 1 1 22 3455667777777788888
Q ss_pred HHHHHHHHHhcchh-----------hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcch------HHHHHHHHhh
Q 011744 331 AVRAIGRCAIKLER-----------AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY------ESIIATLCES 393 (478)
Q Consensus 331 ~v~~i~~l~~~~~~-----------~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~------~~~i~~L~~~ 393 (478)
++..|+.++..-.. .....++.++.++..++..++..+...+..+...+|... ...++.++..
T Consensus 626 A~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~l 705 (778)
T 3opb_A 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQV 705 (778)
T ss_dssp HHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHH
Confidence 88888877742110 011237778888877777777777777777655444321 2345555555
Q ss_pred cCCC-ChhhHHHHHH---HHhhccc
Q 011744 394 LDTL-DEPEAKASMI---WIIGEYA 414 (478)
Q Consensus 394 l~~~-~~~~~~~~~~---~ilGE~~ 414 (478)
+++. .+++++..++ +-+.||+
T Consensus 706 L~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 706 FADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhh
Confidence 5542 3555543333 4444444
No 72
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.63 E-value=3.6e-06 Score=81.84 Aligned_cols=253 Identities=14% Similarity=0.127 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhh--cccccccccHHHHHHHhhc-----------CCChhhHHHHHHHHHHHhhhCCCCcccc--cHHHH
Q 011744 99 KTAAICVAKLYDI--NAELVEDRGFLESLKDLIS-----------DNNPMVVANAVAALAEIEENSSRPIFEI--TSHTL 163 (478)
Q Consensus 99 k~A~~al~~i~~~--~p~~~~~~~~~~~l~~lL~-----------d~~~~V~~~a~~~l~~i~~~~~~~~~~~--~~~~~ 163 (478)
-.|+.++.++... +.+.+-+.+.++.|..+|. ..++.++..|+.+|..++..+......+ ..+.+
T Consensus 50 ~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 129 (354)
T 3nmw_A 50 CPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 129 (354)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcH
Confidence 3555666665432 1122223356677777663 1246788888888888875542222222 34568
Q ss_pred HHHHHhcccCChhhHHHHHHHHhhccCC-ChHHHHH-----HHHHhhhh-hcCCChHHHHHHHHHHHHhhhhcCChHHHH
Q 011744 164 SKLLTALNECTEWGQVFILDALSRYKAA-DAREAEN-----IVERVTPR-LQHANCAVVLSAVKMILQQMELITSTDVVR 236 (478)
Q Consensus 164 ~~Ll~~l~~~~~~~q~~ll~~l~~~~~~-~~~~~~~-----~l~~l~~~-l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~ 236 (478)
+.|++.|...++-.|......|..+... +++.... .++.+..+ +++.+..++..|+.++..+.. .+++...
T Consensus 130 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~--~~~~nk~ 207 (354)
T 3nmw_A 130 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA--HCTENKA 207 (354)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--cChhhhH
Confidence 8888888878888888877777776543 3332222 46667775 456778888888888888742 1323222
Q ss_pred HHH--HHhhhHHHHhhcC-Ch----hHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHHHHhcCcccH
Q 011744 237 NLC--KKMAPPLVTLLSA-EP----EIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNI 309 (478)
Q Consensus 237 ~~~--~~~~~~l~~ll~~-~~----~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~ 309 (478)
.+. ...++.|+.++.+ ++ +++..|..+|..++..- . +++++.
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--------------a-----------------~~~~~~ 256 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--------------A-----------------TNEDHR 256 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--------------T-----------------TCHHHH
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--------------c-----------------CCHHHH
Confidence 232 2456677777752 22 35555555555554310 0 011111
Q ss_pred HH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhH-----HHHHHHHHHHhcccchhHHHHHHHHHHHHHhhC
Q 011744 310 DQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA-----ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY 379 (478)
Q Consensus 310 ~~-----Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~-----~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~ 379 (478)
+. .++.|.+.+++.+.+++++++.+|..++...+... .-.++.+.+++..++..++..+...+.++....
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 11 34555566666667777777777777764322211 134677888888877788888888888888777
Q ss_pred CcchH
Q 011744 380 PNTYE 384 (478)
Q Consensus 380 ~~~~~ 384 (478)
|+.++
T Consensus 337 ~~~~~ 341 (354)
T 3nmw_A 337 PAKYK 341 (354)
T ss_dssp CGGGC
T ss_pred HHHHh
Confidence 76543
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.61 E-value=2.8e-06 Score=71.87 Aligned_cols=210 Identities=13% Similarity=0.086 Sum_probs=152.0
Q ss_pred hhhHHHHhhcCC-hhHHHHHHHHHHHHHhhCccchhhccceeeec--cCCChhHHHHHHHHHHHh--cCcccHHHHHHHH
Q 011744 242 MAPPLVTLLSAE-PEIQYVALRNINLIVQRRPTILAHEIKVFFCK--YNDPIYVKMEKLEIMIKL--ASDRNIDQVLLEF 316 (478)
Q Consensus 242 ~~~~l~~ll~~~-~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l--~~dd~~ir~~al~lL~~l--~~~~n~~~Iv~~L 316 (478)
+...++.+|.+| --++..|++.+..++..+|+...+.++-++.+ .++....-......+..+ .+++-++.+|+-+
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~l 112 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVL 112 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHH
Confidence 344556777755 46888999999999999998888876644332 455544434444444333 3788888899988
Q ss_pred HHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCC
Q 011744 317 KEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDT 396 (478)
Q Consensus 317 ~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~ 396 (478)
..-.+-.|+.+|..+..++++++..+|.....++.-+..++++.+..=+..+..++.-+..+.++.....+.+|+..|.|
T Consensus 113 fanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D 192 (253)
T 2db0_A 113 FANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHD 192 (253)
T ss_dssp HHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGC
T ss_pred HHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcC
Confidence 87767778899999999999999888888888888888888877766666677777666555554444457778887776
Q ss_pred CChhhHHHHHHHHhhcccCccCCHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcc
Q 011744 397 LDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLK 452 (478)
Q Consensus 397 ~~~~~~~~~~~~ilGE~~~~~~~~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~ 452 (478)
- +.-++.++.--+|+.+..-+.--.++....+.|.+.|+-|+--.-++++|+..-
T Consensus 193 ~-deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 193 G-DEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp S-SHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred c-chhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 2 344688888888888865443335555566778888999999999999888753
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.58 E-value=7e-07 Score=82.14 Aligned_cols=173 Identities=6% Similarity=0.052 Sum_probs=133.1
Q ss_pred hhhhhcCCChHHHHHHHHHHHHhhhh---cCChHHHHHHHHHhhhHHHHhh--cCChhHHHHHHHHHHHHHhhCccchhh
Q 011744 203 VTPRLQHANCAVVLSAVKMILQQMEL---ITSTDVVRNLCKKMAPPLVTLL--SAEPEIQYVALRNINLIVQRRPTILAH 277 (478)
Q Consensus 203 l~~~l~~~~~~V~~ea~~~i~~~~~~---~~~~~~~~~~~~~~~~~l~~ll--~~~~~ir~~aL~~l~~l~~~~~~~~~~ 277 (478)
+...+++.+|.++.+|+..+..+... +..+.. .++.+.+...+ ++++++|..|+.++..++..-...|.+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-----~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-----GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44467789999999999988877542 111121 23455666666 367889999999999999764445666
Q ss_pred ccc-----eeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcch------hhH
Q 011744 278 EIK-----VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE------RAA 346 (478)
Q Consensus 278 ~~~-----~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~------~~~ 346 (478)
|.. .+..+.+....+|..+...|..++...+.+.+++.+...+.+.++.+|..++..|+.+...+. +..
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 543 223455666899999999999999888899999999999999999999999999999876552 344
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCC
Q 011744 347 ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP 380 (478)
Q Consensus 347 ~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~ 380 (478)
..+++.+..++.+..+.|+..+...++.+....+
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 5788889999999999999999999988875433
No 75
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.58 E-value=1.1e-06 Score=83.14 Aligned_cols=147 Identities=13% Similarity=0.050 Sum_probs=111.0
Q ss_pred CCCchhhHHHHHHhccCCC------------hhHHHHHHHHHHHhcccCchHHHH-----HHHHHHh-hcCCCCHHHHHH
Q 011744 4 GKDVSSLFTDVVNCMQTEN------------LELKKLVYLYLINYAKSQPDLAIL-----AVNTFVK-DSQDPNPLIRAL 65 (478)
Q Consensus 4 G~d~~~~~~~ii~l~~s~~------------~~~Krl~yl~l~~~~~~~~e~~~l-----~in~l~k-dL~~~n~~vr~~ 65 (478)
|.|-.....+++..+.++. .+.|..+.-.+..+.+.. |.... +++.+.+ -|+++++.+|..
T Consensus 23 ~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~ 101 (296)
T 1xqr_A 23 QRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWR 101 (296)
T ss_dssp CHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHH
Confidence 3566667888899888763 246666666666666542 32221 4567778 899999999999
Q ss_pred HHHHhcCCC--hhhhhH-----HHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCCh
Q 011744 66 AVRTMGCIR--VDKITE-----YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP 134 (478)
Q Consensus 66 AL~~l~~i~--~~e~~~-----~l~~~i~~~l~~-~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~~~ 134 (478)
|..+|+++. +++.-+ ..+|.+.+++.+ +++.||++|+.|+..+.+.+|. .+...+.++.|..+|.+.++
T Consensus 102 Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~ 181 (296)
T 1xqr_A 102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ 181 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 999999984 333222 366888899985 6899999999999999876654 33344678999999999999
Q ss_pred hhHHHHHHHHHHHhhhC
Q 011744 135 MVVANAVAALAEIEENS 151 (478)
Q Consensus 135 ~V~~~a~~~l~~i~~~~ 151 (478)
.|+..|+.++..+...+
T Consensus 182 ~v~~~A~~aLs~L~~~~ 198 (296)
T 1xqr_A 182 KLKVKSAFLLQNLLVGH 198 (296)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999999987764
No 76
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.49 E-value=0.00038 Score=76.76 Aligned_cols=439 Identities=11% Similarity=0.052 Sum_probs=233.1
Q ss_pred cCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC---hhh----hhHHHHHHHHhhcC
Q 011744 19 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDK----ITEYLCDPLQRCLK 91 (478)
Q Consensus 19 ~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~---~~e----~~~~l~~~i~~~l~ 91 (478)
++.+...|+-+.-++..+-+ +|+.-..+...+.+ -+..++.+|-.|+.+|-+.. +++ -...+-..+...+.
T Consensus 18 p~sd~~~r~~A~~~L~~~q~-sp~aw~~~~~iL~~-~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~ 95 (980)
T 3ibv_A 18 PSVGPIIKQQATDFIGSLRS-SSTGWKICHEIFSE-KTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIK 95 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHH-STTHHHHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHc-ChhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHH
Confidence 34489999999999987754 46754444433322 11128999999998776421 122 23333333333332
Q ss_pred -----CCChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCCh-hhHHHHHHHHHHHhhhCCCCcc--------
Q 011744 92 -----DDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNP-MVVANAVAALAEIEENSSRPIF-------- 156 (478)
Q Consensus 92 -----~~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~~~-~V~~~a~~~l~~i~~~~~~~~~-------- 156 (478)
+..++||.|.+.++..++.. +|+..+ ++++.+..++...++ .+....+..+..+.++-.....
T Consensus 96 ~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp--~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~ 173 (980)
T 3ibv_A 96 ELSFLDEPAYISNAVQHLLTLLFLQLYPSNWN--DFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQ 173 (980)
T ss_dssp HCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHhCcccCc--hHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHh
Confidence 35789999999999999875 677766 577888777765444 3344445555544443211100
Q ss_pred ------cccH-----HHHHHHHHhccc----CChhhHHHHHHHHhhccCCChHHH---HHHHHHhhhhhcCCChHHHHHH
Q 011744 157 ------EITS-----HTLSKLLTALNE----CTEWGQVFILDALSRYKAADAREA---ENIVERVTPRLQHANCAVVLSA 218 (478)
Q Consensus 157 ------~~~~-----~~~~~Ll~~l~~----~~~~~q~~ll~~l~~~~~~~~~~~---~~~l~~l~~~l~~~~~~V~~ea 218 (478)
+... .++...+..+.. .++-.....|+.++.|.+.-+-.. ..+++.+...+.+ +.++-.|
T Consensus 174 r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A 251 (980)
T 3ibv_A 174 KDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAA 251 (980)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHH
T ss_pred hhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHH
Confidence 0000 002222222211 344445567888888776533221 3566766666654 7888888
Q ss_pred HHHHHHhhhhcCChHHHHHHHHH--hhhHHHHhh--cCChhHHHHHHH-------HHHHHHhhCc------------cch
Q 011744 219 VKMILQQMELITSTDVVRNLCKK--MAPPLVTLL--SAEPEIQYVALR-------NINLIVQRRP------------TIL 275 (478)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~~~~~~--~~~~l~~ll--~~~~~ir~~aL~-------~l~~l~~~~~------------~~~ 275 (478)
+.++..+...-.+++....++.. +.+.+..+. ..|.++.-...+ .+..+ ...| ..+
T Consensus 252 ~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l 330 (980)
T 3ibv_A 252 CETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQL 330 (980)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHH
Confidence 88887765321233322222211 111111122 234444321111 22223 2333 122
Q ss_pred hhccce-eeeccCCChhHHHHHHHHHHHhcC-----------cccHHH----HHHHHHHhhhhc------C---------
Q 011744 276 AHEIKV-FFCKYNDPIYVKMEKLEIMIKLAS-----------DRNIDQ----VLLEFKEYATEV------D--------- 324 (478)
Q Consensus 276 ~~~~~~-~~~l~~dd~~ir~~al~lL~~l~~-----------~~n~~~----Iv~~L~~~l~~~------d--------- 324 (478)
.+.++. +.+..+++..|...+++.+..... ...... +++.+...++.+ +
T Consensus 331 ~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~ 410 (980)
T 3ibv_A 331 YNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAE 410 (980)
T ss_dssp HHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHH
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHH
Confidence 333332 345556666787778887765431 111223 444444333321 1
Q ss_pred -HHHHHHHHHHHHH-HHhcchhhHHH-HHHHHHHH----hc---ccchhHHHHHHHHHHHHHhhCCc----------chH
Q 011744 325 -VDFVRKAVRAIGR-CAIKLERAAER-CISVLLEL----IK---IKVNYVVQEAIIVIKDIFRRYPN----------TYE 384 (478)
Q Consensus 325 -~~~r~~~v~~i~~-l~~~~~~~~~~-~i~~ll~l----l~---~~~~~v~~~~~~~l~~i~~~~~~----------~~~ 384 (478)
.++|+++. .+-+ ++...+...-. ..+.+... +. ..+|...+.++..+..+...-++ ...
T Consensus 411 F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp 489 (980)
T 3ibv_A 411 FQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPT 489 (980)
T ss_dssp HHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBC
T ss_pred HHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhH
Confidence 25777766 4433 33322322111 11133333 32 23466677777776665433211 122
Q ss_pred HHHHHHHhhcC----CCChhhHHHHHHHHhhcccCccCC----HHHHHHHHhh--cCCCCCHHHHHHHHHHHHHHhccCC
Q 011744 385 SIIATLCESLD----TLDEPEAKASMIWIIGEYAERIDN----ADELLESFLE--SFPEEPAQVQLQLLTATVKLFLKKP 454 (478)
Q Consensus 385 ~~i~~L~~~l~----~~~~~~~~~~~~~ilGE~~~~~~~----~~~~l~~l~~--~~~~~~~~vk~~il~a~~Kl~~~~~ 454 (478)
.++.-+...++ ....|.++..++|++|.|++.+.. -+.++..+.. .+...++.|+...-.++.+++...+
T Consensus 490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 490 VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 34444444332 134688899999999999988754 3467777777 6666778899999999999988766
Q ss_pred CcchHHHHHHHH
Q 011744 455 TEGPQQMIQVTL 466 (478)
Q Consensus 455 ~~~~~~~~~~~l 466 (478)
.. +.+-+..++
T Consensus 570 ~~-L~~~~~~il 580 (980)
T 3ibv_A 570 KQ-VVNYTESSL 580 (980)
T ss_dssp TT-CSSSHHHHH
T ss_pred HH-hhhHHHHHH
Confidence 53 444444444
No 77
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.48 E-value=5e-05 Score=84.86 Aligned_cols=434 Identities=13% Similarity=0.091 Sum_probs=225.4
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC-------hhhhhHHHHHH
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKITEYLCDP 85 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~-------~~e~~~~l~~~ 85 (478)
.+++.+.+++...|+-+.-++..+ +.+|+....+...+.+ +.++.+|-.|+..+-+.. +++-...+-..
T Consensus 20 ~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ 95 (1049)
T 3m1i_C 20 QVVSTFYQGSGVQQKQAQEILTKF-QDNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNF 95 (1049)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHH-HHSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHH-HhCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHH
Confidence 455555667777898898888876 4456654444444443 568999999999887642 23333344444
Q ss_pred HHhhcCCC---------ChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC---
Q 011744 86 LQRCLKDD---------DPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS--- 152 (478)
Q Consensus 86 i~~~l~~~---------~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~--- 152 (478)
+...+.+. +++||.+.+.++..+.+. .|+..+ ++++.+..+++ .++..+..++..|..+.+...
T Consensus 96 ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp--~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~ 172 (1049)
T 3m1i_C 96 VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFS 172 (1049)
T ss_dssp HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhc
Confidence 55544431 489999999999999886 576665 57788888776 555555566666655554321
Q ss_pred CCcc---------cccHHHHHHHHH----hccc-CChhhHHHHHHHHhhccCCChHHH---HHHHHHhhhhhcCCChHHH
Q 011744 153 RPIF---------EITSHTLSKLLT----ALNE-CTEWGQVFILDALSRYKAADAREA---ENIVERVTPRLQHANCAVV 215 (478)
Q Consensus 153 ~~~~---------~~~~~~~~~Ll~----~l~~-~~~~~q~~ll~~l~~~~~~~~~~~---~~~l~~l~~~l~~~~~~V~ 215 (478)
.... ..+...+..++. .+.+ .++-....+++.+..+...-+... ..+++.+...+. .++.++
T Consensus 173 ~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~ 251 (1049)
T 3m1i_C 173 AEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTR 251 (1049)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHH
Confidence 0000 111111222221 1211 223334455666655433221110 123333332111 267777
Q ss_pred HHHHHHHHHhhhhcCChH------HHHHHHHHhhhHHHH------------hh-cC--ChhHHHHHHHHHHHHHhhCccc
Q 011744 216 LSAVKMILQQMELITSTD------VVRNLCKKMAPPLVT------------LL-SA--EPEIQYVALRNINLIVQRRPTI 274 (478)
Q Consensus 216 ~ea~~~i~~~~~~~~~~~------~~~~~~~~~~~~l~~------------ll-~~--~~~ir~~aL~~l~~l~~~~~~~ 274 (478)
-.|+.++..+...--++. .+..+...++..+.. +. .+ +.+......+.+..++..+.+.
T Consensus 252 ~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~ 331 (1049)
T 3m1i_C 252 AITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRAL 331 (1049)
T ss_dssp HHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766643100111 111111111111111 11 11 2222222333344443332222
Q ss_pred ------hhhcc----ce-eeeccCCChhHHHHHHHHHHHhcC-----c---c----cHHHHHHHHHHhhhhc--------
Q 011744 275 ------LAHEI----KV-FFCKYNDPIYVKMEKLEIMIKLAS-----D---R----NIDQVLLEFKEYATEV-------- 323 (478)
Q Consensus 275 ------~~~~~----~~-~~~l~~dd~~ir~~al~lL~~l~~-----~---~----n~~~Iv~~L~~~l~~~-------- 323 (478)
+.+++ .. +.+...++..++..+++.+..++. + . ....+++.++..+..+
T Consensus 332 ~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~d 411 (1049)
T 3m1i_C 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVEN 411 (1049)
T ss_dssp HHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEEC
T ss_pred HcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeC
Confidence 22222 11 122345567889999999888765 1 1 2333444444443211
Q ss_pred -----------CH---HHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHhhCCcchH-H
Q 011744 324 -----------DV---DFVRKAVRAIGRCAIKLERA-AERCISVLLELIK--IKVNYVVQEAIIVIKDIFRRYPNTYE-S 385 (478)
Q Consensus 324 -----------d~---~~r~~~v~~i~~l~~~~~~~-~~~~i~~ll~ll~--~~~~~v~~~~~~~l~~i~~~~~~~~~-~ 385 (478)
|. ..++.+-..+..++...+.. ...+.+.+-+.+. ..+|..++.++..++.+.....+..+ .
T Consensus 412 d~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~ 491 (1049)
T 3m1i_C 412 DEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKR 491 (1049)
T ss_dssp TTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHH
T ss_pred CCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHH
Confidence 11 23444445555666554432 2344444444443 24567788888888876543222111 2
Q ss_pred HHHHHHhhc----CCC--Chhh--HHHHHHHHhhcccCccCC-H---HHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccC
Q 011744 386 IIATLCESL----DTL--DEPE--AKASMIWIIGEYAERIDN-A---DELLESFLESFPEEPAQVQLQLLTATVKLFLKK 453 (478)
Q Consensus 386 ~i~~L~~~l----~~~--~~~~--~~~~~~~ilGE~~~~~~~-~---~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~ 453 (478)
.+..+++.+ +.. .++. ++..++|++|.|++.+.. + +.+++.+.+.+.+.++.|+...-.|+.+++...
T Consensus 492 ~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 492 FVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 233333332 211 1233 344688999999876543 2 355666666777778999999999999999765
Q ss_pred C
Q 011744 454 P 454 (478)
Q Consensus 454 ~ 454 (478)
+
T Consensus 572 ~ 572 (1049)
T 3m1i_C 572 K 572 (1049)
T ss_dssp T
T ss_pred H
Confidence 4
No 78
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.42 E-value=0.00021 Score=79.10 Aligned_cols=244 Identities=12% Similarity=0.159 Sum_probs=136.6
Q ss_pred ChhHHHHHHHHHHHhcccCchHHH-HHHHHHHhhcC------CCCHHHHHHHHHHhcCCCh-----h----------hhh
Q 011744 22 NLELKKLVYLYLINYAKSQPDLAI-LAVNTFVKDSQ------DPNPLIRALAVRTMGCIRV-----D----------KIT 79 (478)
Q Consensus 22 ~~~~Krl~yl~l~~~~~~~~e~~~-l~in~l~kdL~------~~n~~vr~~AL~~l~~i~~-----~----------e~~ 79 (478)
..+.|+-+.-++..++..-++... .+.+.+..-++ ++|...|..|+.+++.+.. . ++.
T Consensus 374 ~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 374 TDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp --CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred ccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 346777777777777766654332 23344433333 5677889999997776521 0 333
Q ss_pred HHHHHHHHhhcCCC---ChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC---
Q 011744 80 EYLCDPLQRCLKDD---DPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS--- 152 (478)
Q Consensus 80 ~~l~~~i~~~l~~~---~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~--- 152 (478)
+.+...+...+.++ +|.||..|+.+++++... .|+... ..++.+.+.+.|+++.|+.+|+.++..++....
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~ 531 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNT 531 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccc
Confidence 43444556666776 999999999999998764 344443 466777778889999999999999999876421
Q ss_pred --------CCcccccHHHHHHHHHhcccCC--h-h--hHHHHHHHHhh----ccCCChHHHHHHHHHhhhhh----cC-C
Q 011744 153 --------RPIFEITSHTLSKLLTALNECT--E-W--GQVFILDALSR----YKAADAREAENIVERVTPRL----QH-A 210 (478)
Q Consensus 153 --------~~~~~~~~~~~~~Ll~~l~~~~--~-~--~q~~ll~~l~~----~~~~~~~~~~~~l~~l~~~l----~~-~ 210 (478)
........+.+..|+..+...+ | - ..-.++..+.. +...-......+++.+...+ ++ .
T Consensus 532 ~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~ 611 (960)
T 1wa5_C 532 SPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPS 611 (960)
T ss_dssp SCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCC
T ss_pred cccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCC
Confidence 1122334455556655554431 0 0 11122233322 21111112223333333322 22 3
Q ss_pred ChHHH---HHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhcC-ChhHHHHHHHHHHHHHhhC
Q 011744 211 NCAVV---LSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRR 271 (478)
Q Consensus 211 ~~~V~---~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~ir~~aL~~l~~l~~~~ 271 (478)
++... ++++..+... ..++....+...+.+.+...+.. ..+..--+++.+..+....
T Consensus 612 ~~~~~~~~~e~l~~l~~~----~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 612 NPRFTHYTFESIGAILNY----TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp CHHHHHHHHHHHHHHHHT----SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 44444 5555555442 24455555666777777777753 3444444677777776553
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1e-05 Score=74.59 Aligned_cols=179 Identities=13% Similarity=0.151 Sum_probs=135.5
Q ss_pred cCCChhHHHHHHHHHHH-hcC--------cccHHHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHhcch------hhHHHH
Q 011744 286 YNDPIYVKMEKLEIMIK-LAS--------DRNIDQVLLEFKEYA-TEVDVDFVRKAVRAIGRCAIKLE------RAAERC 349 (478)
Q Consensus 286 ~~dd~~ir~~al~lL~~-l~~--------~~n~~~Iv~~L~~~l-~~~d~~~r~~~v~~i~~l~~~~~------~~~~~~ 349 (478)
.+.++.-|+.|++-|.. +.+ ..+...+++.|...+ .+.+..+|..++++++.+++... +....+
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 45667888888888887 652 234567888888888 78999999999999998887554 455667
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHhhC-Cc----chHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccCC-----
Q 011744 350 ISVLLELIKIKVNYVVQEAIIVIKDIFRRY-PN----TYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN----- 419 (478)
Q Consensus 350 i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~-~~----~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~~----- 419 (478)
+..+++.+++....|++.+...+..++..- |. .-+.+++.+++.+++- .+.++..++.+++......+.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l 184 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTL 184 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhH
Confidence 788888888888888887777777777653 21 1346888888888764 678888888787777655442
Q ss_pred ----HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHH
Q 011744 420 ----ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVT 465 (478)
Q Consensus 420 ----~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~ 465 (478)
++.++..+.+.+.+.+++||.....++++++...+.+.+.+.+..+
T Consensus 185 ~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 185 QRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1456666777778899999999999999999888876677766654
No 80
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.37 E-value=0.0017 Score=71.64 Aligned_cols=325 Identities=10% Similarity=0.105 Sum_probs=187.8
Q ss_pred HHHHHHHhhc----CCCCHHHHHHHHHHhcCCCh------hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh---c
Q 011744 46 LAVNTFVKDS----QDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---N 112 (478)
Q Consensus 46 l~in~l~kdL----~~~n~~vr~~AL~~l~~i~~------~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~---~ 112 (478)
.+.+.+..-+ ++++...+..|+.+++.+.. .+..+.+++.+.. +.+++|.||..|+.+++++... +
T Consensus 445 ~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~ 523 (963)
T 2x19_B 445 NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADH 523 (963)
T ss_dssp HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555 66788888888888887642 1344455554433 3446899999999999987653 4
Q ss_pred ccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhccc--CChhhHHHHHHHHhhccC
Q 011744 113 AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE--CTEWGQVFILDALSRYKA 190 (478)
Q Consensus 113 p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~--~~~~~q~~ll~~l~~~~~ 190 (478)
|+.++ ..++.+...+.+ +.|+..|+.++..+++..+........+.+..+.+.+.. .++-.+..+++.++....
T Consensus 524 ~~~l~--~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 524 PVMIN--SVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHT--TTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHH--HHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 55555 567788777765 899999999999998764333333344455555554443 234555566666665432
Q ss_pred CC-hHHHH----HHHHHhhhhh----cC-CChH------HHHHHHHHHHHhhhh-cC----------------ChHHHHH
Q 011744 191 AD-AREAE----NIVERVTPRL----QH-ANCA------VVLSAVKMILQQMEL-IT----------------STDVVRN 237 (478)
Q Consensus 191 ~~-~~~~~----~~l~~l~~~l----~~-~~~~------V~~ea~~~i~~~~~~-~~----------------~~~~~~~ 237 (478)
.. .+... .+++.+...+ ++ .++. ..++++..+...... .+ .++....
T Consensus 600 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (963)
T 2x19_B 600 ALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV 679 (963)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH
Confidence 22 22222 2333333322 22 2332 223444333332110 00 1122333
Q ss_pred HHHHhhhHHHHhhc---CChhHHHHHHHHHHHHHhhCccchhhccceee-----eccC-CChhHHHHHHHHHHHhc----
Q 011744 238 LCKKMAPPLVTLLS---AEPEIQYVALRNINLIVQRRPTILAHEIKVFF-----CKYN-DPIYVKMEKLEIMIKLA---- 304 (478)
Q Consensus 238 ~~~~~~~~l~~ll~---~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~-----~l~~-dd~~ir~~al~lL~~l~---- 304 (478)
+...+.+.+..++. .++.+.-.+++.+..++...++.+.++++.+. .... ... ..+.++..++
T Consensus 680 ~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~ 755 (963)
T 2x19_B 680 VLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFA 755 (963)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhC
Confidence 44566666666653 46778888888888887766555555443210 1111 111 2344444432
Q ss_pred Ccc----cHHHHHHHHHHh----hh---hcCHHHHHHHHHHHHHHHhcchh------h-HHHHHHHHHHHhcccchhHHH
Q 011744 305 SDR----NIDQVLLEFKEY----AT---EVDVDFVRKAVRAIGRCAIKLER------A-AERCISVLLELIKIKVNYVVQ 366 (478)
Q Consensus 305 ~~~----n~~~Iv~~L~~~----l~---~~d~~~r~~~v~~i~~l~~~~~~------~-~~~~i~~ll~ll~~~~~~v~~ 366 (478)
.++ .+..+++.+... +. +.+++++.....-+..+...++. . .+.+++.++..++..+..+..
T Consensus 756 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 835 (963)
T 2x19_B 756 HEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVK 835 (963)
T ss_dssp TCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHH
Confidence 222 233444444332 22 23689999999888888877542 2 677888888888877777888
Q ss_pred HHHHHHHHHHhhC
Q 011744 367 EAIIVIKDIFRRY 379 (478)
Q Consensus 367 ~~~~~l~~i~~~~ 379 (478)
.+...+.+++...
T Consensus 836 ~~l~~l~~l~~~~ 848 (963)
T 2x19_B 836 ASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHHHGGGT
T ss_pred HHHHHHHHHHhcC
Confidence 8888888888653
No 81
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.33 E-value=3e-05 Score=68.54 Aligned_cols=199 Identities=12% Similarity=0.089 Sum_probs=148.1
Q ss_pred hhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhh
Q 011744 243 APPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYAT 321 (478)
Q Consensus 243 ~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~ 321 (478)
...+..+++ +|+.+++-+|.++.++...-|+. .|+ .-++.+++.++.-++
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~-----------------l~~------------~~~e~~Ld~iI~llk 85 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSD-----------------LRM------------MVLERHLDVFINALS 85 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH-----------------HHH------------HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----------------ccH------------HHHHHHHHHHHHHHh
Confidence 345566775 67788888888888877643321 111 124566777777778
Q ss_pred hcCHHHHHHHHHHHHHHHhcch---hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHHHHHhhcCCCC
Q 011744 322 EVDVDFVRKAVRAIGRCAIKLE---RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 398 (478)
Q Consensus 322 ~~d~~~r~~~v~~i~~l~~~~~---~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~~L~~~l~~~~ 398 (478)
+.|..+...++++++.+.+..| ..+....+++.++++.+++....++.+.++.+ +--+....++..+...+. ..
T Consensus 86 ~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l~sLl~-Sk 162 (265)
T 3b2a_A 86 QENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKLVRTYINELVV-SP 162 (265)
T ss_dssp STTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHHHHHHHHHHHT-CS
T ss_pred ccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHHHHHHHHHHHh-CC
Confidence 8888898999999999888764 45667788999999988888899999999988 333445677777777774 45
Q ss_pred hhhHHHHHHHHhhcccCccCC---HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Q 011744 399 EPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLKYYTCLC 473 (478)
Q Consensus 399 ~~~~~~~~~~ilGE~~~~~~~---~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~~~~~ 473 (478)
+++++.+++-.+-|.+....+ ..++++.+-.-+..+++.++.-.|.++-+++.+-=.|+..+-+..++...+++.
T Consensus 163 d~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~ 240 (265)
T 3b2a_A 163 DLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLV 240 (265)
T ss_dssp SHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGG
T ss_pred ChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHH
Confidence 788898888888887776644 456666666666778999999999999999886422348888888888888876
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.28 E-value=0.0015 Score=72.24 Aligned_cols=169 Identities=8% Similarity=0.046 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC-----CChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhc
Q 011744 96 YVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-----NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL 170 (478)
Q Consensus 96 ~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d-----~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l 170 (478)
..|+.+..++..++...++.+-+ .+.+.+...+.. .+...+.+|+.+++.+.+.-....-......+. ++..+
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l 513 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEI 513 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhc
Confidence 47788888888888776643321 455666666643 567788999999999876532211122223333 44444
Q ss_pred c--cCChhhHHHHHHHHhhccC---CChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhH
Q 011744 171 N--ECTEWGQVFILDALSRYKA---ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (478)
Q Consensus 171 ~--~~~~~~q~~ll~~l~~~~~---~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (478)
. +.+|..+...+.+++.|.. ..++....+++.+...+ + +.|...|+.++..+... .++.+......+...
T Consensus 514 ~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~ 588 (971)
T 2x1g_F 514 PYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNA 588 (971)
T ss_dssp CTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHH
Confidence 4 3477777778888888752 22334456677776666 3 67888888888877542 223333444455556
Q ss_pred HHHhhcC---ChhHHHHHHHHHHHHHhhC
Q 011744 246 LVTLLSA---EPEIQYVALRNINLIVQRR 271 (478)
Q Consensus 246 l~~ll~~---~~~ir~~aL~~l~~l~~~~ 271 (478)
+..++.+ +.+.+..+++++..++..-
T Consensus 589 l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 589 CHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 6666643 4678889999999988753
No 83
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.12 E-value=0.0042 Score=70.17 Aligned_cols=456 Identities=8% Similarity=0.057 Sum_probs=228.7
Q ss_pred CCchhhHHHHHHh---ccCC--ChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC-----
Q 011744 5 KDVSSLFTDVVNC---MQTE--NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----- 74 (478)
Q Consensus 5 ~d~~~~~~~ii~l---~~s~--~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~----- 74 (478)
.+++....++.++ +.++ +...|+-+.-++..+-+ +|+....+...+. -.+.++.+|..|+..+-+..
T Consensus 4 ~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 4 DQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKE-KCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHh-CchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 4555555444443 3333 67789999999887744 3454333343443 35678999999998776531
Q ss_pred --hhhhhHHHHHHHHhhcC-------CCChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhhHHHHHHHH
Q 011744 75 --VDKITEYLCDPLQRCLK-------DDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (478)
Q Consensus 75 --~~e~~~~l~~~i~~~l~-------~~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l 144 (478)
+++-.+.+-..+.+.+. +.+++||.+.+.++..|.+. .|+..+ ++++.+.+++.. ++.....++.+|
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp--~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP--DMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 23333333344444432 14689999999999999885 476665 577888887765 556677778888
Q ss_pred HHHhhhCC--CCccc--------ccH----HHHHHHHHhcccC-------------------ChhhHHHHHHHHhhccCC
Q 011744 145 AEIEENSS--RPIFE--------ITS----HTLSKLLTALNEC-------------------TEWGQVFILDALSRYKAA 191 (478)
Q Consensus 145 ~~i~~~~~--~~~~~--------~~~----~~~~~Ll~~l~~~-------------------~~~~q~~ll~~l~~~~~~ 191 (478)
..+.++.. ...-. .+. .++.-+.+.+.+. ++-....+|+.+..+...
T Consensus 158 ~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W 237 (1204)
T 3a6p_A 158 LRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW 237 (1204)
T ss_dssp HHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 77765421 11000 000 1111111111110 011223456666655443
Q ss_pred ChHHH-----HHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHh----hhHHHHhh---c----C--C
Q 011744 192 DAREA-----ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKM----APPLVTLL---S----A--E 253 (478)
Q Consensus 192 ~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~----~~~l~~ll---~----~--~ 253 (478)
-+... ..+++.+...+. ++.++-.|+.++..+...-.+++....++..+ ...+.... . . +
T Consensus 238 i~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d 315 (1204)
T 3a6p_A 238 VSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKH 315 (1204)
T ss_dssp SCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHH
T ss_pred cCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHH
Confidence 22111 124555444443 45566677777776643111122111111111 11122221 1 1 1
Q ss_pred hhHHHHHHHHHHHHHhh------------Cccchhhccce-eeeccCCChhHHHHHHHHHHHhcCcc------cHHHHHH
Q 011744 254 PEIQYVALRNINLIVQR------------RPTILAHEIKV-FFCKYNDPIYVKMEKLEIMIKLASDR------NIDQVLL 314 (478)
Q Consensus 254 ~~ir~~aL~~l~~l~~~------------~~~~~~~~~~~-~~~l~~dd~~ir~~al~lL~~l~~~~------n~~~Iv~ 314 (478)
.++.....+.+..++.. .+..+...++. +.+..+++..+...+++..+.+.... ....+++
T Consensus 316 ~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~ 395 (1204)
T 3a6p_A 316 YVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIP 395 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 22222223333333211 12223333332 22345667788888888887665432 2333444
Q ss_pred HHHHhh-------hh---------------cC---------HHHHHHHHHHHHHHHhcchhhHH-HHHHHHHHHhccc--
Q 011744 315 EFKEYA-------TE---------------VD---------VDFVRKAVRAIGRCAIKLERAAE-RCISVLLELIKIK-- 360 (478)
Q Consensus 315 ~L~~~l-------~~---------------~d---------~~~r~~~v~~i~~l~~~~~~~~~-~~i~~ll~ll~~~-- 360 (478)
.|++-+ +. .| .++|+++...+..++..+|...- .+.+.+...+...
T Consensus 396 ~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~ 475 (1204)
T 3a6p_A 396 KYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLD 475 (1204)
T ss_dssp HHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhc
Confidence 443222 00 11 25788887777777776654322 2223332332221
Q ss_pred ----------------------chh-HHHHHHHHHHHHHhh------CCcchHHHHHHHHhhcC--CCChhhHHHHHHHH
Q 011744 361 ----------------------VNY-VVQEAIIVIKDIFRR------YPNTYESIIATLCESLD--TLDEPEAKASMIWI 409 (478)
Q Consensus 361 ----------------------~~~-v~~~~~~~l~~i~~~------~~~~~~~~i~~L~~~l~--~~~~~~~~~~~~~i 409 (478)
... ..+..+..+.-++.. .++.-..+...+++.+- ..++|.++...+-+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~ 555 (1204)
T 3a6p_A 476 AGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTN 555 (1204)
T ss_dssp ---------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHH
T ss_pred ccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 011 112222223222221 23333234556666532 23578888888888
Q ss_pred hhcccCccCC-H---HHHHHHHhhcCCC------------CCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Q 011744 410 IGEYAERIDN-A---DELLESFLESFPE------------EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVTLKYY 469 (478)
Q Consensus 410 lGE~~~~~~~-~---~~~l~~l~~~~~~------------~~~~vk~~il~a~~Kl~~~~~~~~~~~~~~~~l~~~ 469 (478)
+|.|+..+.. | +.+++.+...+.. .+.+++..+-+++.+++...|+. +-+.+.++.+..
T Consensus 556 l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~-L~p~~~~i~~~~ 630 (1204)
T 3a6p_A 556 VSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQL-VLPNFDMLYNHV 630 (1204)
T ss_dssp HHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHH-HGGGHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHH
Confidence 7777666543 2 3455555544322 23589999999999999988763 544455444433
No 84
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.95 E-value=0.013 Score=65.43 Aligned_cols=164 Identities=9% Similarity=0.088 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHhc---CcccHHHHHHHHHHhhh--hcCHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHhcc-----
Q 011744 291 YVKMEKLEIMIKLA---SDRNIDQVLLEFKEYAT--EVDVDFVRKAVRAIGRCAIKLERA-AERCISVLLELIKI----- 359 (478)
Q Consensus 291 ~ir~~al~lL~~l~---~~~n~~~Iv~~L~~~l~--~~d~~~r~~~v~~i~~l~~~~~~~-~~~~i~~ll~ll~~----- 359 (478)
..|+.+-++|..++ .......+.+.+..++. ..+..-+..++.+++.+++..... .+.+++.+++.+..
T Consensus 428 ~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~ 507 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK 507 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence 45655555554444 22333344444445554 356778888999999888765433 22334444443321
Q ss_pred ----cchhHHHHHHHHHH---HHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccC-------------C
Q 011744 360 ----KVNYVVQEAIIVIK---DIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-------------N 419 (478)
Q Consensus 360 ----~~~~v~~~~~~~l~---~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~-------------~ 419 (478)
.+..++..+...++ ..+.++|+....++..+++.+.+ .++.++..++|.+..++...+ .
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~-~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~ 586 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF 586 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcH
Confidence 22234433444444 44556676667778888887765 357788888888777654321 1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCC
Q 011744 420 ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (478)
Q Consensus 420 ~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~ 455 (478)
.+++++.+..-+...+.+.+..+..+++.++...|+
T Consensus 587 ~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 587 IQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp HHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 345555544444445666677888899999887774
No 85
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.92 E-value=0.0077 Score=66.56 Aligned_cols=428 Identities=13% Similarity=0.102 Sum_probs=221.3
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC-------hhh----hhH
Q 011744 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDK----ITE 80 (478)
Q Consensus 12 ~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~-------~~e----~~~ 80 (478)
-.++..+.+++...|+-+.-++..+- .+|+....+...+. .+.++.+|-.|+..+-+.. +++ +-+
T Consensus 19 e~av~~ly~p~~~~r~~A~~~L~~~q-~sp~aw~~~~~iL~---~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~ 94 (1023)
T 4hat_C 19 DQVVSTFYQGSGVQQKQAQEILTKFQ-DNPDAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1023)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-HCTTGGGGHHHHHH---HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHH-cCccHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 34555555555668999999988764 44665444444443 2568999999999887532 122 222
Q ss_pred HHHHHHHhhcCCC-----ChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhC---
Q 011744 81 YLCDPLQRCLKDD-----DPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS--- 151 (478)
Q Consensus 81 ~l~~~i~~~l~~~-----~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~--- 151 (478)
.++..+.+...++ .++||.|-+.++..+++. +|+..+ ++++.+..++.. ++.....++..+..+.++-
T Consensus 95 ~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp--~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~ 171 (1023)
T 4hat_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDF 171 (1023)
T ss_dssp HHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch--HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444433332 589999999999999885 577666 577888887764 3444555555665554441
Q ss_pred -CCCc----cccc----HHHHHHHH----Hhcc-cCChhhHHHHHHHHhhccCCChHHH---HHHHHHhh-hhhcCCChH
Q 011744 152 -SRPI----FEIT----SHTLSKLL----TALN-ECTEWGQVFILDALSRYKAADAREA---ENIVERVT-PRLQHANCA 213 (478)
Q Consensus 152 -~~~~----~~~~----~~~~~~Ll----~~l~-~~~~~~q~~ll~~l~~~~~~~~~~~---~~~l~~l~-~~l~~~~~~ 213 (478)
.... ...+ ...+..++ +.+. ..++-.....|+.++.|...-+-.. ..+++.+. ..+. ++.
T Consensus 172 ~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~ 249 (1023)
T 4hat_C 172 SAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPD 249 (1023)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHH
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHH
Confidence 1100 0000 11111111 1121 1233334456777777664422111 13555555 4443 466
Q ss_pred HHHHHHHHHHHhhh-hcCCh--HH---HHHHHHHhhhHH-----------H-Hhh-cC--ChhHHHHHHHHHHHHHhhCc
Q 011744 214 VVLSAVKMILQQME-LITST--DV---VRNLCKKMAPPL-----------V-TLL-SA--EPEIQYVALRNINLIVQRRP 272 (478)
Q Consensus 214 V~~ea~~~i~~~~~-~~~~~--~~---~~~~~~~~~~~l-----------~-~ll-~~--~~~ir~~aL~~l~~l~~~~~ 272 (478)
.+-.|+.++..+.. ..+.+ +. +..+.......+ . .+. .+ |.+..-.-.+.+..++..+.
T Consensus 250 ~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~ 329 (1023)
T 4hat_C 250 TRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329 (1023)
T ss_dssp HHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 77777887777643 11011 11 111111111111 0 011 11 22322223344444555444
Q ss_pred cchh--hc-cc-------e-eeeccCCChhHHHHHHHHHHHhcCc--------ccHHH----HHHHHHHhhhhcC-----
Q 011744 273 TILA--HE-IK-------V-FFCKYNDPIYVKMEKLEIMIKLASD--------RNIDQ----VLLEFKEYATEVD----- 324 (478)
Q Consensus 273 ~~~~--~~-~~-------~-~~~l~~dd~~ir~~al~lL~~l~~~--------~n~~~----Iv~~L~~~l~~~d----- 324 (478)
..+. ++ .. . +.+...+|..+-..+++..+.++.+ .-... +++.|...+..++
T Consensus 330 ~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~iv 409 (1023)
T 4hat_C 330 ALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVV 409 (1023)
T ss_dssp GGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEE
T ss_pred HHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Confidence 3332 11 11 1 1233345667777788887776531 12333 3444443332211
Q ss_pred ------------------HHHH--HHHHHHHHHHHhcchhhHHHHHHHHHHHh----cc--cchhHHHHHHHHHHHHHhh
Q 011744 325 ------------------VDFV--RKAVRAIGRCAIKLERAAERCISVLLELI----KI--KVNYVVQEAIIVIKDIFRR 378 (478)
Q Consensus 325 ------------------~~~r--~~~v~~i~~l~~~~~~~~~~~i~~ll~ll----~~--~~~~v~~~~~~~l~~i~~~ 378 (478)
..|| |+.+ ..++...+. ..++.+++.+ .. .+|..++.++..++-+...
T Consensus 410 e~d~~~~~~e~~~d~d~~~~f~~~Rd~L---~~l~~l~~~---~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~ 483 (1023)
T 4hat_C 410 ENDEGEIVREFVKESDTIQLYKSEREVL---VYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT 483 (1023)
T ss_dssp ECTTSCEEECSSCCGGGHHHHHHHHHHH---HHHHHHCHH---HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCccHHHHhccchHHHHHHHHHHHHH---HHHhccCHH---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcC
Confidence 1222 1333 333322221 3444444443 32 4688889999999988754
Q ss_pred CCcc-hH----HHHHHHHhhcCC--CChhhH--HHHHHHHhhcccCccCC-H---HHHHHHHhhcCCCCCHHHHHHHHHH
Q 011744 379 YPNT-YE----SIIATLCESLDT--LDEPEA--KASMIWIIGEYAERIDN-A---DELLESFLESFPEEPAQVQLQLLTA 445 (478)
Q Consensus 379 ~~~~-~~----~~i~~L~~~l~~--~~~~~~--~~~~~~ilGE~~~~~~~-~---~~~l~~l~~~~~~~~~~vk~~il~a 445 (478)
-.+. .. .++..|+...+. ..++.+ +.+++|++|.|++.+.. + +.++..+.+.+.+..+.|+.+.-.|
T Consensus 484 ~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~a 563 (1023)
T 4hat_C 484 MSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDT 563 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 2221 22 334444443331 113443 55788999999987653 2 2455556666666778999999999
Q ss_pred HHHHhccCC
Q 011744 446 TVKLFLKKP 454 (478)
Q Consensus 446 ~~Kl~~~~~ 454 (478)
+.|++..+.
T Consensus 564 l~~l~~~c~ 572 (1023)
T 4hat_C 564 FIKIVQKCK 572 (1023)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998654
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00015 Score=67.88 Aligned_cols=193 Identities=11% Similarity=0.107 Sum_probs=123.2
Q ss_pred CCCCCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchH---------HHHHHHHHHhhcCCCCHHHHHHHHHHhc
Q 011744 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDL---------AILAVNTFVKDSQDPNPLIRALAVRTMG 71 (478)
Q Consensus 1 ~~~G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~---------~~l~in~l~kdL~~~n~~vr~~AL~~l~ 71 (478)
|+-+.|.++-=...-.-+.|++-..|.-||-.+...+...+.. ..-....+.+-+.+.|..+...|+.++.
T Consensus 1 m~~~e~~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~ 80 (278)
T 4ffb_C 1 MSGEEEVDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALN 80 (278)
T ss_dssp ----------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCCcchhhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 6666666654322446789999999999999988776554321 1112356788889999999999988775
Q ss_pred CCC------------hhhhhHHHHHHHH-hhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHH
Q 011744 72 CIR------------VDKITEYLCDPLQ-RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (478)
Q Consensus 72 ~i~------------~~e~~~~l~~~i~-~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~ 138 (478)
.+. ....+..++|.+. +++.+..+.+|..|..++..+....... . .+.+.+...+...+|.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~--~~~e~l~~~l~~Knpkv~~ 157 (278)
T 4ffb_C 81 SLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T--QSVELVIPFFEKKLPKLIA 157 (278)
T ss_dssp HHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H--HHHHHHGGGGGCSCHHHHH
T ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H--HHHHHHHHHHhccCHHHHH
Confidence 431 1133455666655 5689999999999999998877543211 1 3567788889999999999
Q ss_pred HHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHH
Q 011744 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA 218 (478)
Q Consensus 139 ~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea 218 (478)
.++..+..+....+.... + .......++..+..++.++|+.||-+|
T Consensus 158 ~~l~~l~~~l~~fg~~~~-----------------~-----------------~k~~l~~i~~~l~k~l~d~~~~VR~aA 203 (278)
T 4ffb_C 158 AAANCVYELMAAFGLTNV-----------------N-----------------VQTFLPELLKHVPQLAGHGDRNVRSQT 203 (278)
T ss_dssp HHHHHHHHHHHHHTTTTC-----------------C-----------------HHHHHHHHGGGHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcC-----------------C-----------------chhHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 888888775443111000 0 001122355566678899999999999
Q ss_pred HHHHHHhhhhcC
Q 011744 219 VKMILQQMELIT 230 (478)
Q Consensus 219 ~~~i~~~~~~~~ 230 (478)
..++..+...++
T Consensus 204 ~~l~~~ly~~~G 215 (278)
T 4ffb_C 204 MNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHhC
Confidence 999987755444
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00077 Score=63.00 Aligned_cols=184 Identities=15% Similarity=0.114 Sum_probs=117.5
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhhccccccc-------ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCc--c
Q 011744 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVED-------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI--F 156 (478)
Q Consensus 86 i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~-------~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~ 156 (478)
+..-+.|+++-.|+.|+..+.+++...|..... ..+.+.+...+.|.|..|+..++.++..+........ .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 556789999999999999999988765432111 1345678888999999999999999988876532211 1
Q ss_pred ----cccHHHHHHHHHh-cccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCC
Q 011744 157 ----EITSHTLSKLLTA-LNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (478)
Q Consensus 157 ----~~~~~~~~~Ll~~-l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~ 231 (478)
......+..++.. +.+..+-.....+..+..+.... .....+++.+.+.+.+.||.|+.+++..+..+...++.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 1122345556654 45555544444444443332110 01124677888889999999999999988877543221
Q ss_pred hHH-HHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhh
Q 011744 232 TDV-VRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQR 270 (478)
Q Consensus 232 ~~~-~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~ 270 (478)
... ....++.+.+.+..+++ +++++|-.|...+..+...
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 110 11122345666667775 7999999999999888654
No 88
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.77 E-value=0.018 Score=59.03 Aligned_cols=134 Identities=17% Similarity=0.114 Sum_probs=98.2
Q ss_pred HhccCCChhHHHHHHHHHHHhcccCchH-----HHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhh-------------
Q 011744 16 NCMQTENLELKKLVYLYLINYAKSQPDL-----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK------------- 77 (478)
Q Consensus 16 ~l~~s~~~~~Krl~yl~l~~~~~~~~e~-----~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e------------- 77 (478)
++-++.-.+.||-+-+++..+.+..++. +.-.+++|++|- .|..+...+|.+|.++-+++
T Consensus 29 Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~ 106 (651)
T 3grl_A 29 RVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDR--SDSEIIGYALDTLYNIISNDEEEEVEENSTRQS 106 (651)
T ss_dssp HHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC-------------
T ss_pred HHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCCCcccccccccccc
Confidence 3567889999999999999999888764 334566777774 46666677888886542110
Q ss_pred ------hhH------HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccc-----cccHHHHHHHhhcCCChhhHHHH
Q 011744 78 ------ITE------YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE-----DRGFLESLKDLISDNNPMVVANA 140 (478)
Q Consensus 78 ------~~~------~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~-----~~~~~~~l~~lL~d~~~~V~~~a 140 (478)
+.+ .-++.+..++.+.+.|||-.|+.++..+....|+..+ .+.-++.|..+|+|+...+|..|
T Consensus 107 ~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRnea 186 (651)
T 3grl_A 107 EDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDG 186 (651)
T ss_dssp -CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHH
T ss_pred hHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHH
Confidence 111 2356678888888999999999888888877776322 23556888888988888888888
Q ss_pred HHHHHHHhhhC
Q 011744 141 VAALAEIEENS 151 (478)
Q Consensus 141 ~~~l~~i~~~~ 151 (478)
+.++.++.+.+
T Consensus 187 llLL~~Lt~~n 197 (651)
T 3grl_A 187 VLLLQALTRSN 197 (651)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhcCC
Confidence 88888887765
No 89
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.66 E-value=0.054 Score=53.25 Aligned_cols=133 Identities=16% Similarity=0.229 Sum_probs=108.0
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhc
Q 011744 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (478)
Q Consensus 11 ~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l 90 (478)
|-.++.... .+...||++--++..|+..=|++.--++|++..-..+.++.||..|++.|..++..+.+.-+...+.++|
T Consensus 31 y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 445555444 4699999999999999999999999999999999999999999999999999986688999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhh
Q 011744 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 91 ~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 149 (478)
+..++.-+...=.++..+++.+|... +...+.++.. .+..+|.-++.-+..-..
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~t----l~~lf~~i~~-~~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGT----LGGLFSQILQ-GEDIVRERAIKFLSTKLK 163 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHH-SCHHHHHHHHHHHHHHGG
T ss_pred hccchHHHHHHHHHHHHHHhcChHHH----HHHHHHHHcc-cchHHHHHHHHHHHHHHh
Confidence 99999888888888888888888632 2233333333 467888888777765433
No 90
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.65 E-value=0.022 Score=58.51 Aligned_cols=295 Identities=12% Similarity=0.107 Sum_probs=179.0
Q ss_pred CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhc-C-CChhhHHHHHHHHHHHhhhCCCC-----------c---
Q 011744 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-D-NNPMVVANAVAALAEIEENSSRP-----------I--- 155 (478)
Q Consensus 92 ~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~-d-~~~~V~~~a~~~l~~i~~~~~~~-----------~--- 155 (478)
+.-..=||.|+.++-.+.+.+|..+.. .-.+.+...|. | .|..++..++..|..+...+..+ .
T Consensus 33 ~tl~eDRR~Av~~Lk~~sk~y~~~Vg~-~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (651)
T 3grl_A 33 STLLDDRRNAVRALKSLSKKYRLEVGI-QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGS 111 (651)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTTTHHHH-HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhHHHhhh-hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHH
Confidence 466678999999999999999988764 33466666554 4 57777888888886543322110 0
Q ss_pred c--c---ccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHH-------HHHHhhhhhcCCChHHHHHHHHHHH
Q 011744 156 F--E---ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-------IVERVTPRLQHANCAVVLSAVKMIL 223 (478)
Q Consensus 156 ~--~---~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~-------~l~~l~~~l~~~~~~V~~ea~~~i~ 223 (478)
| + --...+.-|+..|...+.|.....+++|..++...++..++ -+..+...|.+....|+-|++-++.
T Consensus 112 ~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~ 191 (651)
T 3grl_A 112 QFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQ 191 (651)
T ss_dssp HHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHH
Confidence 0 0 11245666777787788888888888887766444443332 3556778899999999999999999
Q ss_pred HhhhhcCChHHHHHHH--HHhhhHHHHhhcCC-----hhHHHHHHHHHHHHHhhCc---cchhh--ccceeee-c--cCC
Q 011744 224 QQMELITSTDVVRNLC--KKMAPPLVTLLSAE-----PEIQYVALRNINLIVQRRP---TILAH--EIKVFFC-K--YND 288 (478)
Q Consensus 224 ~~~~~~~~~~~~~~~~--~~~~~~l~~ll~~~-----~~ir~~aL~~l~~l~~~~~---~~~~~--~~~~~~~-l--~~d 288 (478)
.+.+ ++++ ++.++ ..+...|+.++..+ ..+--=+|..+..+.+.++ ..|.+ +++.+.. + ..+
T Consensus 192 ~Lt~--~n~~-iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~ 268 (651)
T 3grl_A 192 ALTR--SNGA-IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE 268 (651)
T ss_dssp HHHT--TCHH-HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred HHhc--CCHH-HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence 9865 3443 33321 24556666666432 2455556777888887775 34442 2332211 1 111
Q ss_pred C--hh---HH--HHHHHHHHHhcCccc--------HH-----HHHHHHHHhhhhc--CHHHHHHHHHHHHHHHhcchhhH
Q 011744 289 P--IY---VK--MEKLEIMIKLASDRN--------ID-----QVLLEFKEYATEV--DVDFVRKAVRAIGRCAIKLERAA 346 (478)
Q Consensus 289 d--~~---ir--~~al~lL~~l~~~~n--------~~-----~Iv~~L~~~l~~~--d~~~r~~~v~~i~~l~~~~~~~~ 346 (478)
. +. ++ ..+++++-.++.+++ -. .+++.|+..+... +.+++.+++.+++.+....+...
T Consensus 269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q 348 (651)
T 3grl_A 269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQ 348 (651)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 1 11 11 135666666665533 11 2456666666543 68899999999988776543222
Q ss_pred HH--------------HHHHHHHHhcccc-hhHHHHHHHHHHHHHhhCCcchHHHHHHH
Q 011744 347 ER--------------CISVLLELIKIKV-NYVVQEAIIVIKDIFRRYPNTYESIIATL 390 (478)
Q Consensus 347 ~~--------------~i~~ll~ll~~~~-~~v~~~~~~~l~~i~~~~~~~~~~~i~~L 390 (478)
+. .+..++.++.... -.++-+++..+.-++.+|++.+..++..+
T Consensus 349 ~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~l 407 (651)
T 3grl_A 349 DYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTL 407 (651)
T ss_dssp HHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence 22 2333444443332 34677888888888888877665555543
No 91
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.65 E-value=0.00011 Score=67.16 Aligned_cols=184 Identities=18% Similarity=0.178 Sum_probs=113.3
Q ss_pred hhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCC
Q 011744 53 KDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (478)
Q Consensus 53 kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~ 132 (478)
.-++|+++.+|..|.+.+. ++ .+..++.|+++.||..|+..+ .+ +.+..++.|+
T Consensus 57 ~ll~d~~~~VR~~AA~~l~----~~-------~l~~L~~D~~~~VR~~aA~~L------~~---------~~L~~ll~D~ 110 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP----VE-------ALTPLIRDSDEVVRRAVAYRL------PR---------EQLSALMFDE 110 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC----GG-------GGGGGTTCSSHHHHHHHHTTS------CS---------GGGGGTTTCS
T ss_pred HHhcCCCHHHHHHHHHhCC----HH-------HHHHHccCcCHHHHHHHHHHC------CH---------HHHHHHHcCC
Confidence 4458999999999999753 11 277888999999999999652 11 3466789999
Q ss_pred ChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCCh
Q 011744 133 NPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANC 212 (478)
Q Consensus 133 ~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~ 212 (478)
|+.|+..++..+ +. .. +...+.+++++.+..+.+-+ . . +.+..++++.++
T Consensus 111 d~~VR~~aA~~l-------~~-------~~---L~~L~~D~d~~VR~~aA~~l---~---~-------~~l~~l~~D~d~ 160 (244)
T 1lrv_A 111 DREVRITVADRL-------PL-------EQ---LEQMAADRDYLVRAYVVQRI---P---P-------GRLFRFMRDEDR 160 (244)
T ss_dssp CHHHHHHHHHHS-------CT-------GG---GGGGTTCSSHHHHHHHHHHS---C---G-------GGGGGTTTCSCH
T ss_pred CHHHHHHHHHhC-------CH-------HH---HHHHHcCCCHHHHHHHHHhc---C---H-------HHHHHHHcCCCH
Confidence 999999887643 11 11 12223466666666555421 1 1 123456677888
Q ss_pred HHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChh
Q 011744 213 AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIY 291 (478)
Q Consensus 213 ~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ 291 (478)
.|+.+++.. + + ++ .+..+++ +++++|..+...+ .++.+.. .+.++++.
T Consensus 161 ~VR~~aa~~---l----~-~~-----------ll~~ll~D~d~~VR~aaa~~l------~~~~L~~------Ll~D~d~~ 209 (244)
T 1lrv_A 161 QVRKLVAKR---L----P-EE-----------SLGLMTQDPEPEVRRIVASRL------RGDDLLE------LLHDPDWT 209 (244)
T ss_dssp HHHHHHHHH---S----C-GG-----------GGGGSTTCSSHHHHHHHHHHC------CGGGGGG------GGGCSSHH
T ss_pred HHHHHHHHc---C----C-HH-----------HHHHHHcCCCHHHHHHHHHhC------CHHHHHH------HHcCCCHH
Confidence 888887764 1 1 11 1224554 5778888887653 1122111 23566688
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 011744 292 VKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAI 335 (478)
Q Consensus 292 ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i 335 (478)
||..+..-+. .+.| ..+.|.++.+|..+...+
T Consensus 210 VR~~aa~~l~-----------~~~L-~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 210 VRLAAVEHAS-----------LEAL-RELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHHHSC-----------HHHH-HHCCCCCHHHHHHHHCCC
T ss_pred HHHHHHHcCC-----------HHHH-HHccCCCHHHHHHHHHHh
Confidence 8887777642 1233 333777788877766544
No 92
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.62 E-value=0.11 Score=57.44 Aligned_cols=365 Identities=12% Similarity=0.128 Sum_probs=183.1
Q ss_pred HHHHHHHhhcC-CCChHHHHHHHHHHHHHHhhcc-cccccccHHHHHH-HhhcCCChhhHHHHHHHHHHHhhhCC-CC--
Q 011744 81 YLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLK-DLISDNNPMVVANAVAALAEIEENSS-RP-- 154 (478)
Q Consensus 81 ~l~~~i~~~l~-~~~~~VRk~A~~al~~i~~~~p-~~~~~~~~~~~l~-~lL~d~~~~V~~~a~~~l~~i~~~~~-~~-- 154 (478)
.+...+..++. +.++.+.+.+..|+.+...--| +.+.+.++++.+. .++. ++.++.+|+.++.++..... ++
T Consensus 194 ~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~ 271 (1023)
T 4hat_C 194 QIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDND 271 (1023)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchH
Confidence 34444445553 3677788889999988766433 3343447888888 7875 56799999999999976432 22
Q ss_pred ccc-ccHHHHHHHHHhc-----ccCChhhHHHHHHHHhhccCCChHH-HHHH-------HHHhhhhhcCC-C-hHHHHHH
Q 011744 155 IFE-ITSHTLSKLLTAL-----NECTEWGQVFILDALSRYKAADARE-AENI-------VERVTPRLQHA-N-CAVVLSA 218 (478)
Q Consensus 155 ~~~-~~~~~~~~Ll~~l-----~~~~~~~q~~ll~~l~~~~~~~~~~-~~~~-------l~~l~~~l~~~-~-~~V~~ea 218 (478)
.++ .+...+...+..+ +....+. ..+.. ...++.+ ...+ .+.-..++... + ..++..+
T Consensus 272 ~~~~~l~~lf~~~l~~l~~~i~p~~~~l~-----~~~~~-~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~ 345 (1023)
T 4hat_C 272 LIKRQTVLFFQNTLQQIATSVMPVTADLK-----ATYAN-ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNA 345 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTCCHH-----HHHHH-TCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchHH-----HHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHH
Confidence 111 2222223332211 1000000 00111 1111111 1111 11111233322 2 2344445
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhcCCh---h-HHHHHHHHHHHHHhh--Ccc-c--hhhcccee-eec-cC
Q 011744 219 VKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEP---E-IQYVALRNINLIVQR--RPT-I--LAHEIKVF-FCK-YN 287 (478)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~-ir~~aL~~l~~l~~~--~~~-~--~~~~~~~~-~~l-~~ 287 (478)
...+..+.. .++.+....... .=..+..-+.+++ . .+-+--+.+..+..+ +|+ . +.+.-... ... .+
T Consensus 346 l~~Ll~~~~-~~d~ei~~~tl~-FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d 423 (1023)
T 4hat_C 346 HQYLIQLSK-IEERELFKTTLD-YWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1023)
T ss_dssp HHHHHHHTT-SSCHHHHHHHHH-HHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHhhC-CCcHHHHHHHHH-HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccc
Confidence 555555543 334333221100 0001111111111 1 222222223333332 353 1 11111111 100 11
Q ss_pred -CC----hhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhh--cCHHHHHHHHHHHHHHHhcchhh-H----HHHHHHHHH
Q 011744 288 -DP----IYVKMEKLEIMIKLASDRNIDQVLLEFKEYATE--VDVDFVRKAVRAIGRCAIKLERA-A----ERCISVLLE 355 (478)
Q Consensus 288 -dd----~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~--~d~~~r~~~v~~i~~l~~~~~~~-~----~~~i~~ll~ 355 (478)
|+ ...| ..|..++.+...+..+.+++.+...+.. .+...+..++.++|.+++...+. . ...++.+++
T Consensus 424 ~d~~~~f~~~R-d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~ 502 (1023)
T 4hat_C 424 SDTIQLYKSER-EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD 502 (1023)
T ss_dssp GGGHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHH
Confidence 11 1344 5555566665566666667777666653 57889999999999988765432 2 345566666
Q ss_pred Hhcc-----cchhHHHHHHHHHH---HHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHHHHhhcccCccC---------
Q 011744 356 LIKI-----KVNYVVQEAIIVIK---DIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID--------- 418 (478)
Q Consensus 356 ll~~-----~~~~v~~~~~~~l~---~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~ilGE~~~~~~--------- 418 (478)
+... ....+++.+...++ +.+..+|+.-+.++..|++.+.+ +.|.+..+++|.+...++...
T Consensus 503 l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~-~~~~v~~~A~~al~~l~~~c~~~l~~~~~~ 581 (1023)
T 4hat_C 503 LCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQPR 581 (1023)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHTHHHHSCCTT
T ss_pred hhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 6653 22345555545555 45567787777888888888754 246677777777655443211
Q ss_pred ----CHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcc
Q 011744 419 ----NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEG 457 (478)
Q Consensus 419 ----~~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~ 457 (478)
.-+.+++.+.+.+..-++.-+..+..|++.+....|+++
T Consensus 582 e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 582 ESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp CSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred CCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 123444444443334567777888888999988888653
No 93
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.56 E-value=0.083 Score=58.38 Aligned_cols=450 Identities=12% Similarity=0.093 Sum_probs=220.7
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCh-------hh----h
Q 011744 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV-------DK----I 78 (478)
Q Consensus 10 ~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~-------~e----~ 78 (478)
.+-.++..+.+++...|+-+.-++..+ +.+|+.-..+...+. ++.++.+|-.|+.++-+... ++ +
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~-q~sp~aw~~~~~iL~---~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHL-KEHPDAWTRVDTILE---FSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTS-SCCSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH-HcCchHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH
Confidence 344567777777888999999998765 455675443333332 35789999999998876421 22 2
Q ss_pred hHHHHHHHHhhcCC-----CChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC
Q 011744 79 TEYLCDPLQRCLKD-----DDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (478)
Q Consensus 79 ~~~l~~~i~~~l~~-----~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 152 (478)
-+.++..+.+...+ .++.++.+.+.++..+++. .|+..+ ++++.+..++.. ++......+..|..+.++-.
T Consensus 105 R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp--~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 105 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP--TFISDIVGASRT-SESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc--HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHH
Confidence 22344444443333 3578889999999999875 677665 577777777653 34444556666666655421
Q ss_pred CC-cccc---------------cHHHHHHHHHhccc-CChhhHHHHHHHHhhccCCChHHH---HHHHHHh-hhhhcCCC
Q 011744 153 RP-IFEI---------------TSHTLSKLLTALNE-CTEWGQVFILDALSRYKAADAREA---ENIVERV-TPRLQHAN 211 (478)
Q Consensus 153 ~~-~~~~---------------~~~~~~~Ll~~l~~-~~~~~q~~ll~~l~~~~~~~~~~~---~~~l~~l-~~~l~~~~ 211 (478)
.. .-.+ +..++.-+.+.+.. .++-.....++.++.|...-+-.. ..+++.+ ...+ .+
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L--~~ 259 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--NV 259 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTS--SS
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhc--CC
Confidence 10 0000 11111111111111 223223345666666654422111 1244444 2333 45
Q ss_pred hHHHHHHHHHHHHhhhh-cCC-hHHHHHHHHHhhhHHHHhhcC--------------ChhH-H------HHHHHHHHHHH
Q 011744 212 CAVVLSAVKMILQQMEL-ITS-TDVVRNLCKKMAPPLVTLLSA--------------EPEI-Q------YVALRNINLIV 268 (478)
Q Consensus 212 ~~V~~ea~~~i~~~~~~-~~~-~~~~~~~~~~~~~~l~~ll~~--------------~~~i-r------~~aL~~l~~l~ 268 (478)
+.++-.|+.++..+... .++ .+.+..+...+...+..++.. |++. + ...++.-..+.
T Consensus 260 ~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lI 339 (1073)
T 3gjx_A 260 PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLL 339 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788877776421 110 122222222222212122211 1111 1 01122222333
Q ss_pred hhCccchhhccc----eeeeccCCChhHHHHHHHHHHHhcC----c------cc-----------------HHHHHHHHH
Q 011744 269 QRRPTILAHEIK----VFFCKYNDPIYVKMEKLEIMIKLAS----D------RN-----------------IDQVLLEFK 317 (478)
Q Consensus 269 ~~~~~~~~~~~~----~~~~l~~dd~~ir~~al~lL~~l~~----~------~n-----------------~~~Iv~~L~ 317 (478)
...|+....... .+.|...+|..+-+-.++..+.+.. + .+ ...++..|.
T Consensus 340 e~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~ 419 (1073)
T 3gjx_A 340 EKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVR 419 (1073)
T ss_dssp HHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHH
T ss_pred hcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 334432111111 1233445667777777777554431 1 11 233444443
Q ss_pred H----hhhhcC--------------------HH-HHHHHHH-HHHHHHhcchhhHHHHHHHHHHHhc----c--cchhHH
Q 011744 318 E----YATEVD--------------------VD-FVRKAVR-AIGRCAIKLERAAERCISVLLELIK----I--KVNYVV 365 (478)
Q Consensus 318 ~----~l~~~d--------------------~~-~r~~~v~-~i~~l~~~~~~~~~~~i~~ll~ll~----~--~~~~v~ 365 (478)
. .+..++ .+ -..+..+ .+..++...+ ......+++.+. . .+|...
T Consensus 420 ~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~---~~~~~i~~~~l~~~~~~~~~sW~~l 496 (1073)
T 3gjx_A 420 LLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDY---VDTEIIMTKKLQNQVNGTEWSWKNL 496 (1073)
T ss_dssp HHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSCCCCHHHH
T ss_pred HHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 3 222111 00 0111222 2222332222 233444444443 2 235666
Q ss_pred HHHHHHHHHHHhhCCcc-hHHHHHH----HHhhcCCC--ChhhH--HHHHHHHhhcccCccCC-H---HHHHHHHhhcCC
Q 011744 366 QEAIIVIKDIFRRYPNT-YESIIAT----LCESLDTL--DEPEA--KASMIWIIGEYAERIDN-A---DELLESFLESFP 432 (478)
Q Consensus 366 ~~~~~~l~~i~~~~~~~-~~~~i~~----L~~~l~~~--~~~~~--~~~~~~ilGE~~~~~~~-~---~~~l~~l~~~~~ 432 (478)
+.....++-+...-.+. -...+.. |+...+.. .++.+ ...++|++|+|.+-+.. + +.++..+.+.+.
T Consensus 497 ea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~ 576 (1073)
T 3gjx_A 497 NTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 576 (1073)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHh
Confidence 77777777775332221 1233333 33333221 13343 44456999999987654 2 245566666667
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCc-------chHHHHHHHHHHHHH
Q 011744 433 EEPAQVQLQLLTATVKLFLKKPTE-------GPQQMIQVTLKYYTC 471 (478)
Q Consensus 433 ~~~~~vk~~il~a~~Kl~~~~~~~-------~~~~~~~~~l~~~~~ 471 (478)
+.++.|+.+.-.|+.|++.+++.. +..+.+.+++.....
T Consensus 577 ~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~ 622 (1073)
T 3gjx_A 577 ETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT 622 (1073)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHH
Confidence 778999999999999999886542 123455555554433
No 94
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.50 E-value=0.016 Score=56.98 Aligned_cols=150 Identities=13% Similarity=0.119 Sum_probs=103.0
Q ss_pred hhcCChhHHHHHHHHHHHHHhhCccchhhccce-eeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHH
Q 011744 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKV-FFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDF 327 (478)
Q Consensus 249 ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~-~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~ 327 (478)
..+.++..+..|-+.|.++.+..|+.-..-+.. +....++|..||..|+.-|..+|..+++..|++-|.+.+...++.-
T Consensus 37 ~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E 116 (507)
T 3u0r_A 37 GVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAE 116 (507)
T ss_dssp GGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccchHH
Confidence 334567888888888888888888765444432 2233577899999999999999988999999999999998777654
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCC------cchHHHHHHHHhhcCCCChhh
Q 011744 328 VRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP------NTYESIIATLCESLDTLDEPE 401 (478)
Q Consensus 328 r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~------~~~~~~i~~L~~~l~~~~~~~ 401 (478)
...+=+++-.+-. .+.+..+..++.-+..+++.+++.++.++..-+..-+ +..+.++..+.+.|++++..+
T Consensus 117 ~~~V~~sL~sllk---~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~E 193 (507)
T 3u0r_A 117 FNLVNNALLSIFK---MDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEE 193 (507)
T ss_dssp HHHHHHHHHHHHH---HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHHHh---cChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHH
Confidence 4444444444433 4445566666666666777888888888877665422 233455666666666655433
No 95
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.49 E-value=0.047 Score=60.09 Aligned_cols=210 Identities=15% Similarity=0.138 Sum_probs=122.5
Q ss_pred HHHHhhcCC-CCHHHHHHHHHHhcCCC-hhhhhHHHHHHHHhhcCCC---ChHHHHHHHHHHHHHHhhcc-c----cccc
Q 011744 49 NTFVKDSQD-PNPLIRALAVRTMGCIR-VDKITEYLCDPLQRCLKDD---DPYVRKTAAICVAKLYDINA-E----LVED 118 (478)
Q Consensus 49 n~l~kdL~~-~n~~vr~~AL~~l~~i~-~~e~~~~l~~~i~~~l~~~---~~~VRk~A~~al~~i~~~~p-~----~~~~ 118 (478)
+.+..-++. .++..|..|...|..+. +|+.... ...++.++ ++.||--|+..+-+..+.-| + ...
T Consensus 10 ~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~----~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~- 84 (980)
T 3ibv_A 10 NAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKI----CHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQ- 84 (980)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHH----HHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH-
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHH----HHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH-
Confidence 334333443 37899999999998875 3454444 44444442 78999999999988766322 2 211
Q ss_pred ccHHHHHHHhhc-----CCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCCh-hhHHHHHHHHhhcc---
Q 011744 119 RGFLESLKDLIS-----DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTE-WGQVFILDALSRYK--- 189 (478)
Q Consensus 119 ~~~~~~l~~lL~-----d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~q~~ll~~l~~~~--- 189 (478)
.+.+.+..++. +..+.|+.....++..+.....+..|.-+ +..+++.+...++ .....++++|..+.
T Consensus 85 -~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~---i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv 160 (980)
T 3ibv_A 85 -MIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDF---FASLQGVIAASSQSEFSNFYLKVLLSIGDEI 160 (980)
T ss_dssp -HHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTH---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchH---HHHHHHHhcCCChhHHHHHHHHHHHHhHHHH
Confidence 33444444443 23466788888888888877656667643 3344443332233 44555677776211
Q ss_pred -----CCChHH---------------HHHHHHHhhhhh----cCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhH
Q 011744 190 -----AADARE---------------AENIVERVTPRL----QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (478)
Q Consensus 190 -----~~~~~~---------------~~~~l~~l~~~l----~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (478)
+.+.+. ...+.+.+...+ .+.++.++-.+.+++..|.+.++ ...+-. ..+++.
T Consensus 161 ~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~--~~ll~~ 237 (980)
T 3ibv_A 161 ADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVN--EPCMNL 237 (980)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHC--HHHHHH
T ss_pred HhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhc--chHHHH
Confidence 111110 011233333333 33677888888888888765432 233211 244555
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHhhC
Q 011744 246 LVTLLSAEPEIQYVALRNINLIVQRR 271 (478)
Q Consensus 246 l~~ll~~~~~ir~~aL~~l~~l~~~~ 271 (478)
+..+++ ++++|-.|+++|..+..+.
T Consensus 238 l~~~L~-~~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 238 LYSFLQ-IEELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHHTT-SHHHHHHHHHHHHHHHHSC
T ss_pred HHHHcC-ChHHHHHHHHHHHHHHHcC
Confidence 555554 4889999999999999874
No 96
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.48 E-value=0.013 Score=63.65 Aligned_cols=219 Identities=16% Similarity=0.173 Sum_probs=161.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHH---hcCCChhhhhHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHhhccccccc--cc
Q 011744 47 AVNTFVKDSQDPNPLIRALAVRT---MGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAELVED--RG 120 (478)
Q Consensus 47 ~in~l~kdL~~~n~~vr~~AL~~---l~~i~~~e~~~~l~~~i~~~l~~~-~~~VRk~A~~al~~i~~~~p~~~~~--~~ 120 (478)
..+.+.....+++..||..|-.+ +....+|+-+..++|.+.+.+.+. .+..+-.|..++.++....|+.+.. ++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 45778888899999999887664 444567888899999999999764 6899999999999999887876431 36
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhcc---CCChHHHH
Q 011744 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---AADAREAE 197 (478)
Q Consensus 121 ~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~---~~~~~~~~ 197 (478)
++|.+..++-|.-+.|..+|..++..++.--...- +.+.++.|++.+.+|++ .-..++.|+.-. .-+.....
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~ 250 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH
Confidence 78899999999999999999999999887542211 23456778887776654 334456665422 11222333
Q ss_pred HHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc--CChhHHHHHHHHHHHHHhh
Q 011744 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQR 270 (478)
Q Consensus 198 ~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~ir~~aL~~l~~l~~~ 270 (478)
-+.+.+..-|+.+..++...++-.+-+++..+.+|.....+.-.+.|.+-+... ++|++|-++-+++..+...
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 445555566778888999999888888877778888777666667776666664 6899999988888877543
No 97
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.41 E-value=0.0029 Score=57.14 Aligned_cols=168 Identities=14% Similarity=0.074 Sum_probs=100.8
Q ss_pred HHHHHHHhhcCCCCh--HHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCc
Q 011744 81 YLCDPLQRCLKDDDP--YVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~--~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~ 155 (478)
.-+|.+.+.|.++++ .++..|+.++..+...+++ .+...+.+|.|.++|.+.++.++..|+.+|..+...++.+.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 345678888988887 8888899998887765542 34345788999999999999999999999999876432221
Q ss_pred cc-ccHHHHHHHHHhccc-CChhhHHHH---HHHHhhccCCChHHHHHHHHHhhhhhc----------------CCChHH
Q 011744 156 FE-ITSHTLSKLLTALNE-CTEWGQVFI---LDALSRYKAADAREAENIVERVTPRLQ----------------HANCAV 214 (478)
Q Consensus 156 ~~-~~~~~~~~Ll~~l~~-~~~~~q~~l---l~~l~~~~~~~~~~~~~~l~~l~~~l~----------------~~~~~V 214 (478)
.. .-.+.++.|++.|.. .++-.|-.. |+-|.........-....+..+..++. +.++.|
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 11 112456677776653 455555444 444443321111111223344433221 135689
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHH--HhhhHHHHhh
Q 011744 215 VLSAVKMILQQMELITSTDVVRNLCK--KMAPPLVTLL 250 (478)
Q Consensus 215 ~~ea~~~i~~~~~~~~~~~~~~~~~~--~~~~~l~~ll 250 (478)
+..|+.++..+.- .+++.-+.+.+ .++++|+.++
T Consensus 168 ~~na~~~L~nLss--~~~~~R~~~r~~~Gli~~Lv~~l 203 (233)
T 3tt9_A 168 FYNVTGCLRNMSS--AGADGRKAMRRCDGLIDSLVHYV 203 (233)
T ss_dssp HHHHHHHHHHHTT--SCHHHHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHCCCcHHHHHHHH
Confidence 9999988888642 24444333321 2345555555
No 98
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.39 E-value=0.0092 Score=53.86 Aligned_cols=139 Identities=13% Similarity=0.164 Sum_probs=90.8
Q ss_pred HHHhhhhhcCCCh--HHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhhCcc--
Q 011744 200 VERVTPRLQHANC--AVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT-- 273 (478)
Q Consensus 200 l~~l~~~l~~~~~--~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~-- 273 (478)
++.+..+|++.++ .+...|+..+..+.. .+++..+.+.. ..+++|+.+|+ ++++++..|..+|..++..+++
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~--~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECF--QKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHH--HCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHc--CCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5667778888887 888888888877642 24444433433 56889999996 6789999999999999976542
Q ss_pred -chhhc--ccee-eecc-CCChhHHHHHHHHHHHhcCc-ccHHHHHHH----HHHhhh----------------hcCHHH
Q 011744 274 -ILAHE--IKVF-FCKY-NDPIYVKMEKLEIMIKLASD-RNIDQVLLE----FKEYAT----------------EVDVDF 327 (478)
Q Consensus 274 -~~~~~--~~~~-~~l~-~dd~~ir~~al~lL~~l~~~-~n~~~Iv~~----L~~~l~----------------~~d~~~ 327 (478)
.+..+ ++.+ ..+. ..+..++..+...|++|... +|-..|+.+ |.+.+. ..+.++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 22222 3332 2343 45678999999999998754 444445443 221110 125577
Q ss_pred HHHHHHHHHHHHh
Q 011744 328 VRKAVRAIGRCAI 340 (478)
Q Consensus 328 r~~~v~~i~~l~~ 340 (478)
++.+..++..++.
T Consensus 168 ~~na~~~L~nLss 180 (233)
T 3tt9_A 168 FYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777664
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.32 E-value=0.0095 Score=53.10 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=69.8
Q ss_pred ccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHh-hcCCCChH
Q 011744 18 MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQR-CLKDDDPY 96 (478)
Q Consensus 18 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~-~l~~~~~~ 96 (478)
+..-....|.+--.+...+...+.+.. .+....-.+++...+|..|...++.. . . .+.+.+.+.. ...|++..
T Consensus 46 ~~~~~~gf~~~~~~a~~~~~~~~~~~~---~~la~~L~~~~~deVR~~Av~lLg~~-~-~-~~~~L~~ir~~va~D~~Wr 119 (240)
T 3l9t_A 46 FSLIEHGFKEEEQRALTDYKSNDGEYI---KKLAFLAYQSDVYQVRMYAVFLFGYL-S-K-DKEILIFMRDEVSKDNNWR 119 (240)
T ss_dssp HTC-----CHHHHHHHHHHHHSCHHHH---HHHHHHHHTCSSHHHHHHHHHHHHHT-T-T-SHHHHHHHHHTGGGCSCHH
T ss_pred HHHhhcccHHHHHHHHHHHHhCCHHHH---HHHHHHHHhCcchHHHHHHHHHHHhc-c-C-cHHHHHHHHHHhCCCCCcc
Confidence 333344444444444444443332221 23333444666678888888887766 2 2 2566777776 66678888
Q ss_pred HHHHHHHHHHHHHh-hcccccccccHHHHHHHhhcCCChhhHHHHHHHH
Q 011744 97 VRKTAAICVAKLYD-INAELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (478)
Q Consensus 97 VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l 144 (478)
||..++.++..+.. .+|+. ..+.+.....|+|+-|++.|....
T Consensus 120 Vre~lA~a~~~~~~~~~pe~-----~l~~~~~W~~d~n~~VRR~Ase~~ 163 (240)
T 3l9t_A 120 VQEVLAKAFDEFCKKIEYKK-----ALPIIDEWLKSSNLHTRRAATEGL 163 (240)
T ss_dssp HHHHHHHHHHHHHHHHCTTT-----THHHHHHHHHCSSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHH-----HHHHHHHHhcCCCHHHHHHHHHhh
Confidence 88888888888775 67763 346677788888888887776443
No 100
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.29 E-value=0.18 Score=54.89 Aligned_cols=245 Identities=15% Similarity=0.184 Sum_probs=147.6
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc--cccc--ccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCc
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE--LVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~--~~~~--~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~ 155 (478)
..+...+++.+.++.+. ..|+.++..+++..+. .+++ ..+.+.+..+..|++..|+.+|-.+...+...-++..
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 35777788888885444 7888888888764421 1111 0234666777788888888888888877776654322
Q ss_pred ccccHHHHHHHHHhcccCChhh-HHHHHHHHhhccCCChHHH----HHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcC
Q 011744 156 FEITSHTLSKLLTALNECTEWG-QVFILDALSRYKAADAREA----ENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (478)
Q Consensus 156 ~~~~~~~~~~Ll~~l~~~~~~~-q~~ll~~l~~~~~~~~~~~----~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~ 230 (478)
. ...++.+++.+....-|. ++-.|+++..+....++.. .++++.+...+.+.-+.|.-.|.+++..+..-+.
T Consensus 131 ~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 131 I---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD 207 (986)
T ss_dssp H---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred H---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC
Confidence 2 345666666665556684 5566777776653333332 3567777777888888998888888877766566
Q ss_pred ChHHHHHHHHHhhhHHHHhhcCChhHHHHHHHHHHHHHhhC-c-cchhh----cccee-eeccCCChhHHHHHHHHHHHh
Q 011744 231 STDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR-P-TILAH----EIKVF-FCKYNDPIYVKMEKLEIMIKL 303 (478)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~ll~~~~~ir~~aL~~l~~l~~~~-~-~~~~~----~~~~~-~~l~~dd~~ir~~al~lL~~l 303 (478)
+.+.. ..++.|+.-+.+..+ .=+++..++... - ++-.| .++.+ ..+.+....++|++.-++-+|
T Consensus 208 n~d~~-----~~~~~~~~~~~~p~~----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~ 278 (986)
T 2iw3_A 208 NKDIE-----RFIPSLIQCIADPTE----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNM 278 (986)
T ss_dssp CTTTG-----GGHHHHHHHHHCTTH----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred Ccchh-----hhHHHHHHHhcChhh----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcch
Confidence 65432 345555555542222 223444554431 0 00011 11222 123455688999998888777
Q ss_pred c----CcccHHHHHHHHHHhhh-----hcCHHHHHHHHHHHHHH
Q 011744 304 A----SDRNIDQVLLEFKEYAT-----EVDVDFVRKAVRAIGRC 338 (478)
Q Consensus 304 ~----~~~n~~~Iv~~L~~~l~-----~~d~~~r~~~v~~i~~l 338 (478)
| ++..+..-++.|+.-+. -+||+.|..+-+++..+
T Consensus 279 ~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 279 CKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 6 45555655555554332 46899987776665444
No 101
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.27 E-value=0.00018 Score=65.67 Aligned_cols=186 Identities=16% Similarity=0.088 Sum_probs=114.9
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHH
Q 011744 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSK 165 (478)
Q Consensus 86 i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~ 165 (478)
+..++.|+++.||+.|+..+ .| ..+..+++|+++.|+..++..+ +. . .
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l------~~---------~~l~~L~~D~~~~VR~~aA~~L-------~~-------~---~ 102 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS------PV---------EALTPLIRDSDEVVRRAVAYRL-------PR-------E---Q 102 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------CG---------GGGGGGTTCSSHHHHHHHHTTS-------CS-------G---G
T ss_pred HHHHhcCCCHHHHHHHHHhC------CH---------HHHHHHccCcCHHHHHHHHHHC-------CH-------H---H
Confidence 45666899999999999853 11 3466788999999999888542 11 1 1
Q ss_pred HHHhcccCChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhH
Q 011744 166 LLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (478)
Q Consensus 166 Ll~~l~~~~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (478)
+...+.++++.....+.+-+ . . +.+..++++.++.|+.++++. + + ++ .
T Consensus 103 L~~ll~D~d~~VR~~aA~~l---~-~---------~~L~~L~~D~d~~VR~~aA~~---l----~-~~-----------~ 150 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRL---P-L---------EQLEQMAADRDYLVRAYVVQR---I----P-PG-----------R 150 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS---C-T---------GGGGGGTTCSSHHHHHHHHHH---S----C-GG-----------G
T ss_pred HHHHHcCCCHHHHHHHHHhC---C-H---------HHHHHHHcCCCHHHHHHHHHh---c----C-HH-----------H
Confidence 23334566666665554422 1 1 124456778888999888762 1 1 11 1
Q ss_pred HHHhhc-CChhHHHHHHHHHHHHHhhCccchhhccceeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcC
Q 011744 246 LVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVD 324 (478)
Q Consensus 246 l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d 324 (478)
+..+++ .++.+|..+...+ .++.+. ..+.++++.||..++.-+ . .+.|...+.+.+
T Consensus 151 l~~l~~D~d~~VR~~aa~~l------~~~ll~------~ll~D~d~~VR~aaa~~l---~--------~~~L~~Ll~D~d 207 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRL------PEESLG------LMTQDPEPEVRRIVASRL---R--------GDDLLELLHDPD 207 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS------CGGGGG------GSTTCSSHHHHHHHHHHC---C--------GGGGGGGGGCSS
T ss_pred HHHHHcCCCHHHHHHHHHcC------CHHHHH------HHHcCCCHHHHHHHHHhC---C--------HHHHHHHHcCCC
Confidence 224554 5788888887751 122222 123566688888888753 1 134556678888
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHH
Q 011744 325 VDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVI 372 (478)
Q Consensus 325 ~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l 372 (478)
+.+|..++..++ .+.+..+ ++.++.|+..+...+
T Consensus 208 ~~VR~~aa~~l~-------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 208 WTVRLAAVEHAS-------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHHHHHSC-------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHHHcCC-------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 889888887754 1344444 777777877665543
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.24 E-value=0.0092 Score=54.73 Aligned_cols=186 Identities=12% Similarity=0.038 Sum_probs=116.0
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH----hhcCCChhhHHHHHHHHHHHhhhCC--C
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD----LISDNNPMVVANAVAALAEIEENSS--R 153 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~----lL~d~~~~V~~~a~~~l~~i~~~~~--~ 153 (478)
+.+-+.+...+.+++.--|-+|+..+.+.....|+.+. ...+.+.+ .+.|.|+.|...++..+..+...-. +
T Consensus 45 ~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~ 122 (266)
T 2of3_A 45 NQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE 122 (266)
T ss_dssp TTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445578888889999999999999988777775433 12333433 3459999999999888877543211 1
Q ss_pred Cccc--ccHHHHHHHHHhcccCChhhHHH---HHHHHhhccCCChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhh
Q 011744 154 PIFE--ITSHTLSKLLTALNECTEWGQVF---ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEL 228 (478)
Q Consensus 154 ~~~~--~~~~~~~~Ll~~l~~~~~~~q~~---ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~ 228 (478)
..+. .....++.|+..+-+..+-..-. +++.+....| ...+.+.+...++|.|+.++-|++..+..+.+.
T Consensus 123 y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 123 TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 1111 11345667777765554332222 3444433322 124666666677888899999998888777553
Q ss_pred cCChHHHHHHHHHhh---hHHHHhhc-CChhHHHHHHHHHHHHHhhCccchhhc
Q 011744 229 ITSTDVVRNLCKKMA---PPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHE 278 (478)
Q Consensus 229 ~~~~~~~~~~~~~~~---~~l~~ll~-~~~~ir~~aL~~l~~l~~~~~~~~~~~ 278 (478)
.+-+. ...+ +.+..+++ +|+++|-+|+.++..+-..-.+.+-.+
T Consensus 198 ~G~~~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 198 AGISP------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp HCSGG------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cCCCc------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33321 2355 66777776 688899998888888766544444333
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.20 E-value=0.0077 Score=55.25 Aligned_cols=162 Identities=11% Similarity=0.102 Sum_probs=111.8
Q ss_pred HhhcCChhHHHHHHHHHHHHHhhCccchhhcccee----e-eccCCChhHHHHHHHHHHHhc----------CcccHHHH
Q 011744 248 TLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVF----F-CKYNDPIYVKMEKLEIMIKLA----------SDRNIDQV 312 (478)
Q Consensus 248 ~ll~~~~~ir~~aL~~l~~l~~~~~~~~~~~~~~~----~-~l~~dd~~ir~~al~lL~~l~----------~~~n~~~I 312 (478)
.+.++|..-+..|++.|.......|+.+...++.+ . .+.+....+-.+++++|..+. .+..+..+
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 34567888888899988888877775544433221 1 122445788889999886653 12235678
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcchHHHH---HH
Q 011744 313 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESII---AT 389 (478)
Q Consensus 313 v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i---~~ 389 (478)
+|.|++=+.++...+|..+-..+..+..-+|+ ..+++.+++-++..++.++.+++..+..++..+.-.....+ ..
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~--~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ 211 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP--LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKT 211 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHH
Confidence 88888888888888887776666666554443 35677888888999999999999999998876543344456 77
Q ss_pred HHhhcCCCChhhHHHHHHHHhhc
Q 011744 390 LCESLDTLDEPEAKASMIWIIGE 412 (478)
Q Consensus 390 L~~~l~~~~~~~~~~~~~~ilGE 412 (478)
+...++| .++.++.++.-.+.|
T Consensus 212 ia~ll~D-~d~~VR~aAl~~lve 233 (266)
T 2of3_A 212 VAPFVGD-KDVNVRNAAINVLVA 233 (266)
T ss_dssp HGGGGGC-SSHHHHHHHHHHHHH
T ss_pred HHHHHcC-CCHHHHHHHHHHHHH
Confidence 7777776 467777777655554
No 104
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.19 E-value=0.48 Score=53.45 Aligned_cols=277 Identities=15% Similarity=0.095 Sum_probs=145.0
Q ss_pred HHHHHhhcCC-CCHHHHHHHHHHhcCCCh-hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccccccc---ccHH
Q 011744 48 VNTFVKDSQD-PNPLIRALAVRTMGCIRV-DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED---RGFL 122 (478)
Q Consensus 48 in~l~kdL~~-~n~~vr~~AL~~l~~i~~-~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~---~~~~ 122 (478)
.+.+..-++. .++..|..|-+.|..... |+....+.-.+. -.+.++.||.-|+..+-+..+..=..+++ ..+.
T Consensus 14 ~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir 91 (1204)
T 3a6p_A 14 VKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK 91 (1204)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 3444444443 477789999988877643 333333322222 24678999999999998876542111111 1333
Q ss_pred HHHHHhhc-C------CChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhcc-----C
Q 011744 123 ESLKDLIS-D------NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK-----A 190 (478)
Q Consensus 123 ~~l~~lL~-d------~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~-----~ 190 (478)
+.+.+++. . .++.|+..+..++..|.....+..|.-+ +..+++.+.. ++-.....+.+|..+. .
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~l---l~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~ 167 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDM---LIELDTLSKQ-GETQTELVMFILLRLAEDVVTF 167 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTH---HHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHH---HHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccc
Confidence 44444432 2 4578888888899998887755567543 3333333322 3322222333333321 1
Q ss_pred C--ChHHH-----------HHHHHHhhhhhcC-------------------CChHHHHHHHHHHHHhhhhcCChHHHHHH
Q 011744 191 A--DAREA-----------ENIVERVTPRLQH-------------------ANCAVVLSAVKMILQQMELITSTDVVRNL 238 (478)
Q Consensus 191 ~--~~~~~-----------~~~l~~l~~~l~~-------------------~~~~V~~ea~~~i~~~~~~~~~~~~~~~~ 238 (478)
. ..... ..+++.+...+++ .+..++..+.+++..+...++ ...+..-
T Consensus 168 ~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~-~~~i~~~ 246 (1204)
T 3a6p_A 168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS-MSHITAE 246 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC-HHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC-HHHHHhc
Confidence 1 11110 1222322222221 123466666666665543221 1211100
Q ss_pred HHHhhhHHHHhhcCChhHHHHHHHHHHHHHhhC--ccchhhccce---------eeec--------cCCChhHHHHHHHH
Q 011744 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR--PTILAHEIKV---------FFCK--------YNDPIYVKMEKLEI 299 (478)
Q Consensus 239 ~~~~~~~l~~ll~~~~~ir~~aL~~l~~l~~~~--~~~~~~~~~~---------~~~l--------~~dd~~ir~~al~l 299 (478)
-..+++.+..++ +++.+|-.|+++|..++.++ |+...+.+.. +... .++|..++++..++
T Consensus 247 ~~~ll~~l~~~l-~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~l 325 (1204)
T 3a6p_A 247 NCKLLEILCLLL-NEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQV 325 (1204)
T ss_dssp TSHHHHHHHHGG-GCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHc-CCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHH
Confidence 001333333333 47889999999999999876 3221111111 1111 12235677777777
Q ss_pred HHHhc--------------CcccHHHHHHHHHHhhhhcCHHHHHHHH
Q 011744 300 MIKLA--------------SDRNIDQVLLEFKEYATEVDVDFVRKAV 332 (478)
Q Consensus 300 L~~l~--------------~~~n~~~Iv~~L~~~l~~~d~~~r~~~v 332 (478)
+..++ ...+...+++.++.+..+++.++...+.
T Consensus 326 l~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l 372 (1204)
T 3a6p_A 326 LCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQ 372 (1204)
T ss_dssp HHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHH
Confidence 76655 4556778899998888777766555544
No 105
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.19 E-value=0.072 Score=48.58 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=77.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHhcC---CChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 011744 50 TFVKDSQDPNPLIRALAVRTMGC---IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (478)
Q Consensus 50 ~l~kdL~~~n~~vr~~AL~~l~~---i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 126 (478)
-+...-.+++ ..+...|+-+-. -.+|++.+.+++.+.....+++..|||-.+.-+...++..|+... ..++.|.
T Consensus 20 lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~--~~l~~L~ 96 (257)
T 3gs3_A 20 WCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP--HVINVVS 96 (257)
T ss_dssp HHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHH
T ss_pred HHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3333333344 366666664443 247889999999999988899999999999999999999999887 6889999
Q ss_pred HhhcCCChhhHHHHHHHHHHHhh
Q 011744 127 DLISDNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 127 ~lL~d~~~~V~~~a~~~l~~i~~ 149 (478)
.+++|+|+.|...++.+...+.+
T Consensus 97 ~Ll~d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 97 MLLRDNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988877654
No 106
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.00 E-value=0.23 Score=49.06 Aligned_cols=194 Identities=15% Similarity=0.079 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHHhhCccch---h-hccc---ee-eecc-CCChhHHHHHHHHHHHhcCcc------cHHHHH--HHHH
Q 011744 255 EIQYVALRNINLIVQRRPTIL---A-HEIK---VF-FCKY-NDPIYVKMEKLEIMIKLASDR------NIDQVL--LEFK 317 (478)
Q Consensus 255 ~ir~~aL~~l~~l~~~~~~~~---~-~~~~---~~-~~l~-~dd~~ir~~al~lL~~l~~~~------n~~~Iv--~~L~ 317 (478)
.+.|-++-++..++-. |++. . .++. .+ ..+. ..-..|-|.++.++.++.+.. .+.+++ ..++
T Consensus 243 Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l 321 (480)
T 1ho8_A 243 QLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL 321 (480)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccch
Confidence 4678888888888653 2221 1 1111 11 1122 223567777888899988754 222221 1122
Q ss_pred Hh---h---hhcCHHHHHHHHHHHHHHHhcch--hhHHHHHHHH-HHHhcccchhHHHHHHHHHHHHHhhCCcchHHHHH
Q 011744 318 EY---A---TEVDVDFVRKAVRAIGRCAIKLE--RAAERCISVL-LELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIA 388 (478)
Q Consensus 318 ~~---l---~~~d~~~r~~~v~~i~~l~~~~~--~~~~~~i~~l-l~ll~~~~~~v~~~~~~~l~~i~~~~~~~~~~~i~ 388 (478)
.. + +-.|+|+..++-..-..+.+.+. ...+.|..-+ -..|+-+..+-.+.+|.-=. .++.+-.-.++.
T Consensus 322 ~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa---~kf~e~~~~llk 398 (480)
T 1ho8_A 322 PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNI---DEFKKDNYKIFR 398 (480)
T ss_dssp HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHS---GGGSSGGGHHHH
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHH---HHHHhcchHHHH
Confidence 22 2 23688887766544444444332 2344555433 33345555566667775221 222333346788
Q ss_pred HHHhhcCC---------CChhhHHHHHHHHhhcccCccCCHHHHHHHH------hhcCCCCCHHHHHHHHHHHHHHhcc
Q 011744 389 TLCESLDT---------LDEPEAKASMIWIIGEYAERIDNADELLESF------LESFPEEPAQVQLQLLTATVKLFLK 452 (478)
Q Consensus 389 ~L~~~l~~---------~~~~~~~~~~~~ilGE~~~~~~~~~~~l~~l------~~~~~~~~~~vk~~il~a~~Kl~~~ 452 (478)
.|.+.|+. -++|.+.+.++.=+|||....+....+++.+ ++-...++++||...|.|+-|+...
T Consensus 399 ~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 399 QLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 88888863 2367789999999999999988877666553 4455678999999999999998653
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.72 E-value=0.01 Score=52.82 Aligned_cols=141 Identities=12% Similarity=0.065 Sum_probs=97.1
Q ss_pred CchhhHHHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHh-hcCCCCHHHHHHHHHHhcCCChhhhhHHHHH
Q 011744 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIRVDKITEYLCD 84 (478)
Q Consensus 6 d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~k-dL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~ 84 (478)
+........-.+.+++.++.|-++--.+... ...++ +.+.++. --.+++=-||..+-..++.+....-.+...+
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~~----~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~ 142 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDKE----ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALP 142 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSHH----HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcHH----HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4445556666678888888888877766666 33333 3455555 3356777888888777776542111123556
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHhhcccccc-cccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC
Q 011744 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVE-DRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (478)
Q Consensus 85 ~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~-~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 152 (478)
.+.....|+++.||+.|+.+..-.... |.... +....+.+..+..|++..|+.+....|..+.+.+|
T Consensus 143 ~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 143 IIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp HHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 788999999999999999987532221 21111 12456888889999999999999999999998774
No 108
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.71 E-value=0.011 Score=65.73 Aligned_cols=122 Identities=12% Similarity=0.064 Sum_probs=89.8
Q ss_pred CChhHHHHHHHHHHHhccc--------CchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhh---
Q 011744 21 ENLELKKLVYLYLINYAKS--------QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC--- 89 (478)
Q Consensus 21 ~~~~~Krl~yl~l~~~~~~--------~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~--- 89 (478)
++..+++.++++++.+.+. .++...-..+.+.+.+++.++.-+-.+|++|||++.|+.++.+.+.+...
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~ 486 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKS 486 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSC
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCcccc
Confidence 4667888899988776532 23545556677777888888999999999999999998777644433211
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhh--cCCChhhHHHHHHHHHHH
Q 011744 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI--SDNNPMVVANAVAALAEI 147 (478)
Q Consensus 90 l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL--~d~~~~V~~~a~~~l~~i 147 (478)
-.+....||..|+.|+.++....|+.+. +.+.+.. .+.++.||.+|+..+.+-
T Consensus 487 ~~~~~~rvr~aAi~ALr~~~~~~p~~v~-----~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 487 LDEYSTRVQAEAIMALRNIAKRDPRKVQ-----EIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp CCCSCHHHHHHHHHTTTTGGGTCHHHHH-----HHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHhhhhchHHHH-----HHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 1123457999999999999887777554 6677766 457899999999888653
No 109
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.59 E-value=0.046 Score=52.84 Aligned_cols=132 Identities=16% Similarity=0.216 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCC---ChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHH
Q 011744 62 IRALAVRTMGCI---RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (478)
Q Consensus 62 vr~~AL~~l~~i---~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~ 138 (478)
.+...|+-+-.+ .+|++.+.+++.+.....+++..|||-.+.-+...+...++.+. ..++.|..+|.|+|+.|..
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~--~~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL--KLIANLNMLLRDENVNVVK 118 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCCHHHHH
Confidence 455556554443 57889999999999999999999999999999999999999886 6889999999999999999
Q ss_pred HHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccC-----ChhhHHHHHHHHhhccCCChHHHHHHHHHhhhhhcCCChH
Q 011744 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTALNEC-----TEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCA 213 (478)
Q Consensus 139 ~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~-----~~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 213 (478)
.++.+...+.+ -.++.+++. ... .-|..+. .+-+.+.....+.|..
T Consensus 119 ~~I~~~tslYp-----------l~f~~i~~~-~~~~~~~e~~W~~m~-----------------~lK~~Il~~~ds~n~G 169 (386)
T 3o2t_A 119 KAILTMTQLYK-----------VALQWMVKS-RVISELQEACWDMVS-----------------AMAGDIILLLDSDNDG 169 (386)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHC--CCCHHHHHHHHHHH-----------------HHHHHHHHGGGCSSHH
T ss_pred HHHHHHHHHHH-----------HHHHHHhcC-CCcchhHHHHHHHHH-----------------HHHHHHHHHhccCCcc
Confidence 99888877653 234555442 111 1244332 2233344456678899
Q ss_pred HHHHHHHHHHH
Q 011744 214 VVLSAVKMILQ 224 (478)
Q Consensus 214 V~~ea~~~i~~ 224 (478)
|+..|++.+-.
T Consensus 170 Vrl~aiKFle~ 180 (386)
T 3o2t_A 170 IRTHAIKFVEG 180 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99999886654
No 110
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.15 E-value=0.03 Score=55.99 Aligned_cols=235 Identities=13% Similarity=0.131 Sum_probs=141.2
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhcccC-----------chHHHHHHHHH----HhhcCCCC--HHHHHHHHHHhcCCC
Q 011744 12 TDVVNCMQTENLELKKLVYLYLINYAKSQ-----------PDLAILAVNTF----VKDSQDPN--PLIRALAVRTMGCIR 74 (478)
Q Consensus 12 ~~ii~l~~s~~~~~Krl~yl~l~~~~~~~-----------~e~~~l~in~l----~kdL~~~n--~~vr~~AL~~l~~i~ 74 (478)
-..+.-+-+++=+.|+=+-+++..+.... .|++.-.+-.+ -.|.-|+. -.||..|-++||.+.
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL~ 256 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIY 256 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHHH
Confidence 34444577888999999999998876432 24433222222 13444433 358888888777652
Q ss_pred --hhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC
Q 011744 75 --VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (478)
Q Consensus 75 --~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 152 (478)
+++ . .++..+.+.+..+.+.||--+.+++--+...-.+ ++ +..+.+...|.|.|-.|+..|+.+|..+. .+
T Consensus 257 hLp~e-~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld--~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p 329 (800)
T 3oc3_A 257 PLIGP-N-DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-KD--GLCRKLVSLLSSPDEDIKLLSAELLCHFP--IT 329 (800)
T ss_dssp TTSCS-C-CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-HH--HHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CS
T ss_pred hCChh-H-HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-HH--HHHHHHHhhcCCcccHHHHHHHHHhhhhc--ch
Confidence 122 2 2333333555778999999999998766222222 22 57788888999999999999999998877 11
Q ss_pred CCcccccHHHHHHHHHhcccCChhhHHHHHHHHhhccC--CChHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhhhhcC
Q 011744 153 RPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA--ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (478)
Q Consensus 153 ~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~~~~~--~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~ 230 (478)
.....+...+...+..+.+-+ -..-.++++|+.++. .........++.+.+.+.|+-++|+..+.+++..+.
T Consensus 330 -~~l~~LL~iLWd~L~~LDDLS-ASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL---- 403 (800)
T 3oc3_A 330 -DSLDLVLEKCWKNIESEELIS-VSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS---- 403 (800)
T ss_dssp -STHHHHHHHHHHHHHTCCSCC-TTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----
T ss_pred -hhHHHHHHHHHHHhhhhcccc-hhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----
Confidence 122222222333333332211 122235555555331 110001157888899999999999999999988753
Q ss_pred ChHHHHHHHHHhhhHHHHhhcCChhHHHHHHHHHH
Q 011744 231 STDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNIN 265 (478)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~ll~~~~~ir~~aL~~l~ 265 (478)
+...++-+.+ .-++..+.+++-.+++.-.
T Consensus 404 ~~~~LRLIFQ------NILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 EESIDFLVAE------VVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CHHHHHHHHH------HHHHCSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHH------HHHhCCcHHHHHHHHHHHH
Confidence 4444432211 1245788888888887664
No 111
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.08 E-value=2.3 Score=46.94 Aligned_cols=161 Identities=12% Similarity=0.101 Sum_probs=91.1
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHhhhh--cCHHHHHHHHHHHHHHHhcchh-hHHHHHHH----HHHHhcccc----h-
Q 011744 295 EKLEIMIKLASDRNIDQVLLEFKEYATE--VDVDFVRKAVRAIGRCAIKLER-AAERCISV----LLELIKIKV----N- 362 (478)
Q Consensus 295 ~al~lL~~l~~~~n~~~Iv~~L~~~l~~--~d~~~r~~~v~~i~~l~~~~~~-~~~~~i~~----ll~ll~~~~----~- 362 (478)
.++..+..+...+....+.+.|.+.+.. .+..-...++.++|.++....+ ..+.++.. ++.+..... .
T Consensus 461 d~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~ 540 (1073)
T 3gjx_A 461 ETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKA 540 (1073)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhH
Confidence 3444455554455555566666655543 3578888999999999766543 23344444 444433321 2
Q ss_pred hHHHHHHHHHH---HHHhhCCcchHHHHHHHHhhcCCCChhhHHHHHH----HHhhcccCcc---------CCHHHHHHH
Q 011744 363 YVVQEAIIVIK---DIFRRYPNTYESIIATLCESLDTLDEPEAKASMI----WIIGEYAERI---------DNADELLES 426 (478)
Q Consensus 363 ~v~~~~~~~l~---~i~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~----~ilGE~~~~~---------~~~~~~l~~ 426 (478)
.+...+...++ +.+.++|+.-+.++..+++.+.+- ++.+..+++ .+.-+-...+ +....+++.
T Consensus 541 ~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~-~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~ 619 (1073)
T 3gjx_A 541 IIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHET-HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNN 619 (1073)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTS
T ss_pred HHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHH
Confidence 23333333444 456678888888899999887652 455543333 2222222211 112334444
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhccCCCc
Q 011744 427 FLESFPEEPAQVQLQLLTATVKLFLKKPTE 456 (478)
Q Consensus 427 l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~ 456 (478)
+.+.+..-+++-...+..+++.+....|.+
T Consensus 620 ~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 620 INTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 333344446677777888888888888875
No 112
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.77 E-value=0.52 Score=42.85 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=90.2
Q ss_pred HHHHHH-HHHH-hcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHHHHHHHHhhcCCCChHHHHHH
Q 011744 26 KKLVYL-YLIN-YAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTA 101 (478)
Q Consensus 26 Krl~yl-~l~~-~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~~l~~~i~~~l~~~~~~VRk~A 101 (478)
.|+-.| -+.. ..+.+|+++--+.+.+..=-.+++..+|..-..++...+ .++++..+++.+..++.|+++.|-|+|
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~ 110 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRV 110 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 555555 2333 566678876556666655344688889999999887765 468899999999999999999999999
Q ss_pred HHHHHHHHhh-------cccc---ccc-----ccHHHHHHHhhcCCChhhHHHHHHHHHHHh
Q 011744 102 AICVAKLYDI-------NAEL---VED-----RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 102 ~~al~~i~~~-------~p~~---~~~-----~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~ 148 (478)
+.|...+|+. +|.. ... ..+...+.......+.+|+.+|+..+..+.
T Consensus 111 I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 111 IQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 9999999974 2321 111 133455556677889999999999888755
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.63 E-value=0.61 Score=44.98 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=88.3
Q ss_pred HHHHHH-HHHH-hcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHHHHHHHHhhcCCCChHHHHHH
Q 011744 26 KKLVYL-YLIN-YAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTA 101 (478)
Q Consensus 26 Krl~yl-~l~~-~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~--~~e~~~~l~~~i~~~l~~~~~~VRk~A 101 (478)
.|+.+| -+.. +++.+|+++--....+..--.+++..+|.....++...+ ..+++..+++.+..++.|+++.|-|+|
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~ 120 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKA 120 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 344444 2333 466777765444555555455778999999999888765 568888999999999999999999999
Q ss_pred HHHHHHHHhh-------cccc---ccc-----ccHHHHHHHhhcCCChhhHHHHHHHHHHHhh
Q 011744 102 AICVAKLYDI-------NAEL---VED-----RGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 102 ~~al~~i~~~-------~p~~---~~~-----~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 149 (478)
+.|...+|+. +|.. .+. ..+...+..++...+.+|+.+|+..+..+..
T Consensus 121 I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 121 ILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 9999999963 2321 011 1234555566778899999999998877553
No 114
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.35 E-value=0.12 Score=54.73 Aligned_cols=68 Identities=24% Similarity=0.241 Sum_probs=51.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc---cccccHH-HHHHHhhcCCChhhHHHHHHHHHHHhhhC
Q 011744 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFL-ESLKDLISDNNPMVVANAVAALAEIEENS 151 (478)
Q Consensus 82 l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~-~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 151 (478)
+.|.+ +.|+++++..|..|+.|+..+.. +|+. +...+.+ +.+..+|.|++..|+.+|+.+|..++...
T Consensus 36 i~Pll-~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 36 ILPVL-KDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp THHHH-HHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 34444 45899999999999999999986 4432 1112444 55678999999999999999999888764
No 115
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=93.72 E-value=0.54 Score=49.56 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=48.5
Q ss_pred HHHhhcCCCCHHHHHHHHHHhcCCCh-hhhhH-----HHH-HHHHhhcCCCChHHHHHHHHHHHHHHhh
Q 011744 50 TFVKDSQDPNPLIRALAVRTMGCIRV-DKITE-----YLC-DPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (478)
Q Consensus 50 ~l~kdL~~~n~~vr~~AL~~l~~i~~-~e~~~-----~l~-~~i~~~l~~~~~~VRk~A~~al~~i~~~ 111 (478)
.+.+.|+|+++..|..|+.+|+++.. ++... .++ +.+.+++.|++..||..|+-|+..+...
T Consensus 38 Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 38 PVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45567999999999999999999863 33222 233 4467889999999999999999888654
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.69 E-value=4 Score=45.24 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=82.7
Q ss_pred ChhhhhHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHhhc-------c-cccccccHHHHHHHhhcCCChhhHHHHH
Q 011744 74 RVDKITEYLCDPLQRCLKD----DDPYVRKTAAICVAKLYDIN-------A-ELVEDRGFLESLKDLISDNNPMVVANAV 141 (478)
Q Consensus 74 ~~~e~~~~l~~~i~~~l~~----~~~~VRk~A~~al~~i~~~~-------p-~~~~~~~~~~~l~~lL~d~~~~V~~~a~ 141 (478)
.+++.++. +..++.+ +++.+|+.|.++++.+.+++ | +.++ .+.+.+.+.+...|...+..++
T Consensus 388 Pt~e~l~~----~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~--~i~~~l~~~~~~~~~~~~~~~L 461 (1056)
T 1lsh_A 388 ATRESLSY----ARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ--PLHDLLSQSSDRAKEEEIVLAL 461 (1056)
T ss_dssp CCHHHHHH----HHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH--HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHH----HHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH--HHHHHHHHHHhcCChHHHHHHH
Confidence 34556655 4444444 68899999999998886642 1 2233 4566666777777777778888
Q ss_pred HHHHHHhhhCCCCcccccHHHHHHHHHhccc-----CC--hhhHHHHHHHHhhccCCChHHHHHHHHHhhhhh--cCCCh
Q 011744 142 AALAEIEENSSRPIFEITSHTLSKLLTALNE-----CT--EWGQVFILDALSRYKAADAREAENIVERVTPRL--QHANC 212 (478)
Q Consensus 142 ~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~-----~~--~~~q~~ll~~l~~~~~~~~~~~~~~l~~l~~~l--~~~~~ 212 (478)
.+|+.+... ..+..+.+.+.. .+ .-.++..+..|+.+....++.... .+.+.. ...++
T Consensus 462 kaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~---il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 462 KALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQE---IVLPIFLNVAIKS 528 (1056)
T ss_dssp HHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHH---HHHHHHHCTTSCH
T ss_pred HHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHH---HHHHHhcCCCCCh
Confidence 888887532 234455554432 12 224455788888877655544433 333344 34567
Q ss_pred HHHHHHHHHHHHh
Q 011744 213 AVVLSAVKMILQQ 225 (478)
Q Consensus 213 ~V~~ea~~~i~~~ 225 (478)
.||..|...++..
T Consensus 529 EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 529 ELRIRSCIVFFES 541 (1056)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 8999998888864
No 117
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.46 E-value=0.62 Score=46.84 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=96.2
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD 92 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~ 92 (478)
..++.+..+.-+.|.-|.+++.-+.+--.+ .--+++.+...|++.++.||+.|..+|.-+..++.++.++..+=.+|.+
T Consensus 267 qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~ 345 (800)
T 3oc3_A 267 QLVGFLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIES 345 (800)
T ss_dssp HHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHT
T ss_pred HHHhhcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhh
Confidence 334455788899999999999865111112 4557889999999999999999999999998777777777777776654
Q ss_pred CC-hHHHHHHHH-HHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHh
Q 011744 93 DD-PYVRKTAAI-CVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 93 ~~-~~VRk~A~~-al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~ 148 (478)
-+ -..-..+++ -+.+++...+....++..+|.|.+.+...-++||.+++.++..+.
T Consensus 346 LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 346 EELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp CCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred hcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 22 222233333 344455544443334478899999999999999999998886654
No 118
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.34 E-value=1.3 Score=36.07 Aligned_cols=81 Identities=9% Similarity=0.136 Sum_probs=55.9
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----Chh---hh-hHHHHHHHHhhcCCCChHHHHH
Q 011744 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD---KI-TEYLCDPLQRCLKDDDPYVRKT 100 (478)
Q Consensus 29 ~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~---e~-~~~l~~~i~~~l~~~~~~VRk~ 100 (478)
+.+-+.-....+++-..-++..|+|-|+++||.++-.||..+-.+ +.+ ++ -..+...+.+++...++.||++
T Consensus 25 ~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~k 104 (140)
T 3ldz_A 25 LILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEK 104 (140)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHH
Confidence 445556666777777888899999999999999999998865432 221 11 1234444555555578899999
Q ss_pred HHHHHHHHH
Q 011744 101 AAICVAKLY 109 (478)
Q Consensus 101 A~~al~~i~ 109 (478)
....+..-.
T Consensus 105 il~li~~W~ 113 (140)
T 3ldz_A 105 LKALMVEWT 113 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766543
No 119
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=88.92 E-value=2.2 Score=35.74 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=54.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----Chh---hhh-HHHHHHHHhhcCC-CChHHHH
Q 011744 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD---KIT-EYLCDPLQRCLKD-DDPYVRK 99 (478)
Q Consensus 29 ~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~---e~~-~~l~~~i~~~l~~-~~~~VRk 99 (478)
..+-+.-..+.+++....++..|+|-|+++||.++-.||..|-.+ +.+ +++ ..++..+.+++.. .++.||+
T Consensus 35 ~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~ 114 (163)
T 1x5b_A 35 LIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCE 114 (163)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHH
Confidence 344555566666677788899999999999999999999866432 211 222 2344555555544 6789999
Q ss_pred HHHHHHHHHH
Q 011744 100 TAAICVAKLY 109 (478)
Q Consensus 100 ~A~~al~~i~ 109 (478)
++...+..-.
T Consensus 115 kil~li~~W~ 124 (163)
T 1x5b_A 115 KLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887665433
No 120
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=87.56 E-value=3.6 Score=36.28 Aligned_cols=130 Identities=8% Similarity=0.038 Sum_probs=76.2
Q ss_pred HHHhccCCChhHHHHHHHHHHHhccc-CchHHHHHHHHHHhhcCCCC-HHHHHHHHHHhcCCChhhhhHHHHHHHHhhcC
Q 011744 14 VVNCMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPN-PLIRALAVRTMGCIRVDKITEYLCDPLQRCLK 91 (478)
Q Consensus 14 ii~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~~l~in~l~kdL~~~n-~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~ 91 (478)
+-.+..++.++.+-++-+.+...... .++. +-.+..+... -+| ..+=.+| .+++.+.. ..-+.+.+.+.+.+.
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~-l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~-~~~~~~~~~i~~W~~ 134 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRFSLEE-VVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVA-LHLTELPTIFALFYG 134 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH-HHHGGGGTTT--TCSHHHHHHHH-HHHHHHHH-HSGGGHHHHHHHHTT
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhCCHHH-HHHHHHHhcc--CCcHHHHHHHH-HHHHHHHH-HChHHHHHHHHHHHc
Confidence 34467777788887777777655433 2222 1112222221 112 2222333 33332210 011123455888999
Q ss_pred CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC
Q 011744 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (478)
Q Consensus 92 ~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 152 (478)
|++.++|+.|+.+...-.+ ..+ .+ ...+.+..++.|++.-|+.+...+|.++.+.++
T Consensus 135 s~~~w~rR~ai~~~l~~~~-~~~-~~--~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 135 AENFWNRRVALNLQLMLKE-KTN-QD--LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp CSSHHHHHHHHHTTTTCGG-GCC-HH--HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred CCCHHHHHHHHHHHHHHHH-CCC-HH--HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCH
Confidence 9999999999997753322 111 11 345666778999999999999999999987764
No 121
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=87.55 E-value=1.5 Score=38.80 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=53.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccc
Q 011744 49 NTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (478)
Q Consensus 49 n~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~ 117 (478)
..+.+=..|+|+.+|..|+-..-.-....-.+.+.+.+..++.|++-||||..+.++..+++.+|+.+.
T Consensus 127 ~~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~ 195 (220)
T 2b6c_A 127 TIFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVE 195 (220)
T ss_dssp HHHHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 345667789999999999885533333344456677777799999999999999999999999998654
No 122
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=86.80 E-value=15 Score=34.33 Aligned_cols=138 Identities=10% Similarity=0.090 Sum_probs=91.0
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHH-----HHHhhcCCCCHHHHHHHHHHhcCCChh-----hhh--
Q 011744 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVN-----TFVKDSQDPNPLIRALAVRTMGCIRVD-----KIT-- 79 (478)
Q Consensus 12 ~~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in-----~l~kdL~~~n~~vr~~AL~~l~~i~~~-----e~~-- 79 (478)
..+++-+.+.+-..+|-...-+..++..+.+.+.-.|+ .|.+-..+.+....+-||+++..+..- .++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 35566666677777777777777766666666555443 566666777888899999999887543 333
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccc----c----------ccHHHHHHHhhc---CCChhhHHHHHH
Q 011744 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE----D----------RGFLESLKDLIS---DNNPMVVANAVA 142 (478)
Q Consensus 80 ~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~----~----------~~~~~~l~~lL~---d~~~~V~~~a~~ 142 (478)
+.++..+...+.+.++.|-|.|..-+..+...++.... . ..| +.+...|. ..|..++..|+.
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~-~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPW-ANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTT-HHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcH-HHHHHHHhccCCCCHHHHHHHHH
Confidence 34566677777788889988888888877665543221 0 013 44555665 567777777777
Q ss_pred HHHHHhhh
Q 011744 143 ALAEIEEN 150 (478)
Q Consensus 143 ~l~~i~~~ 150 (478)
++..+...
T Consensus 280 LIN~lL~~ 287 (339)
T 3dad_A 280 LINKTLAA 287 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77665544
No 123
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=86.33 E-value=19 Score=33.66 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=65.4
Q ss_pred hhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHH-HhhhHHHHhhc-CChhHHHHHHHHHHHHHhh---------Cccc
Q 011744 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQR---------RPTI 274 (478)
Q Consensus 206 ~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~~---------~~~~ 274 (478)
.|++++...+..+..-+-.+. ..+.+...+++. .-+..|++... .+.|..--+|+++..+... +|++
T Consensus 126 kL~~~~~~~lr~aLfsLk~~~--q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~f 203 (339)
T 3dad_A 126 KLYSSSGPELRRSLFSLKQIF--QEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDT 203 (339)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH--HTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHh--hcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHH
Confidence 344566655666655554421 135666666554 34555666665 6899999999999999764 2222
Q ss_pred hhhccceeeeccCCChhHHHHHHHHHHHhcC--cccHHHHHHHHH
Q 011744 275 LAHEIKVFFCKYNDPIYVKMEKLEIMIKLAS--DRNIDQVLLEFK 317 (478)
Q Consensus 275 ~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~--~~n~~~Iv~~L~ 317 (478)
++.-+. ...+.+..|-+.||++|..++. +.|...+..+..
T Consensus 204 I~~lys---lv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~ 245 (339)
T 3dad_A 204 IQWLYT---LCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVN 245 (339)
T ss_dssp HHHHHH---GGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHH---HHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHH
Confidence 222111 1224568899999999988873 447665555443
No 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=84.63 E-value=6.2 Score=34.94 Aligned_cols=94 Identities=20% Similarity=0.166 Sum_probs=60.0
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC------------ChhhhhH
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI------------RVDKITE 80 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i------------~~~e~~~ 80 (478)
.|-++.+..+.+.---+.+-+.-..+.+++-..-++.+|+|-|+++||.++-.||..|-.. .+.++.+
T Consensus 12 ~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 12 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 3334444333333333344555556666677788899999999999999999999976643 2334443
Q ss_pred HHHHHHHhhcC-CCChHHHHHHHHHHHHHHh
Q 011744 81 YLCDPLQRCLK-DDDPYVRKTAAICVAKLYD 110 (478)
Q Consensus 81 ~l~~~i~~~l~-~~~~~VRk~A~~al~~i~~ 110 (478)
. +.+++. ..++.||+++...+..-..
T Consensus 92 ~----l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 92 E----LKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp H----HHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred H----HHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3 444443 3677899998877665433
No 125
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=84.57 E-value=15 Score=30.02 Aligned_cols=97 Identities=10% Similarity=-0.022 Sum_probs=64.2
Q ss_pred hccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----Chh---hh-hHHHHHHHHh
Q 011744 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD---KI-TEYLCDPLQR 88 (478)
Q Consensus 17 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~---e~-~~~l~~~i~~ 88 (478)
+.+....+.---+.+-+.-....+++-..-++..|+|-++++||.+.-.||..+-.. +.+ ++ -..+...+.+
T Consensus 19 ATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~k 98 (149)
T 3g2s_A 19 ATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIK 98 (149)
T ss_dssp HSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHH
T ss_pred HcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 333333333333455566667777778888999999999999999999999866533 221 11 1234555777
Q ss_pred hcCC------CChHHHHHHHHHHHHHHhhcc
Q 011744 89 CLKD------DDPYVRKTAAICVAKLYDINA 113 (478)
Q Consensus 89 ~l~~------~~~~VRk~A~~al~~i~~~~p 113 (478)
++.+ .++.||.+....+..-....|
T Consensus 99 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 99 VVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 7753 578999999887776554433
No 126
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=83.72 E-value=4.3 Score=33.34 Aligned_cols=81 Identities=10% Similarity=0.027 Sum_probs=56.3
Q ss_pred HHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC----Chh---hhh-HHHHHHHHhhcCC------CCh
Q 011744 30 YLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD---KIT-EYLCDPLQRCLKD------DDP 95 (478)
Q Consensus 30 yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i----~~~---e~~-~~l~~~i~~~l~~------~~~ 95 (478)
.+-+.-..+.+++....++.+|+|-++++||.++..||..|-.+ +.+ +++ ..++..+.+++.. .++
T Consensus 22 ~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~ 101 (148)
T 1mhq_A 22 IQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATG 101 (148)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCH
Confidence 44455555666677788899999999999999999999966532 322 222 3456667777753 477
Q ss_pred HHHHHHHHHHHHHHh
Q 011744 96 YVRKTAAICVAKLYD 110 (478)
Q Consensus 96 ~VRk~A~~al~~i~~ 110 (478)
.||+++...+..-..
T Consensus 102 ~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 102 KVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998876665433
No 127
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=83.41 E-value=3.2 Score=37.08 Aligned_cols=128 Identities=9% Similarity=0.001 Sum_probs=65.7
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHH-HHHHHhcCCChhhhhHHHHHHHHhhcC
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRA-LAVRTMGCIRVDKITEYLCDPLQRCLK 91 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~-~AL~~l~~i~~~e~~~~l~~~i~~~l~ 91 (478)
.+..++.++.++.+-++-+.+.. ....++. +..+..+.+ |-.+.- .+-..++. .+...+. +.+.+.
T Consensus 52 la~~Lw~~~~~E~r~lA~li~~~-~~~~~~~----~~~~v~~~~--nWd~~D~~~~~l~~~--~~~~~~~----~~~W~~ 118 (235)
T 1t06_A 52 LAEELYATGNYDAMYFAGIIADP-KAMSESD----FDRWIDGAY--FYMLSDYVVAVTLSE--SNIAQDV----ADKWIA 118 (235)
T ss_dssp HHHHHHHTCCHHHHHHHHHHCCG-GGCCHHH----HHHHHHTCC--SHHHHHHTHHHHHTT--SSSHHHH----HHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHhhCH-HhcCHHH----HHHHHhCCC--cHHHHHHHHHHHHhc--CchHHHH----HHHHHc
Confidence 45678888888888777654321 1112222 233333333 222211 12222332 2333333 556667
Q ss_pred CCChHHHHHHHH----HHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCC
Q 011744 92 DDDPYVRKTAAI----CVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (478)
Q Consensus 92 ~~~~~VRk~A~~----al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~ 153 (478)
|++.++|+.|+. .+.....+.++.-....+.+.+...+.|++..|+.+...+|.++...+++
T Consensus 119 s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 119 SGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHH
Confidence 777777777777 33432222211111114556666677777777777777777777766543
No 128
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=82.49 E-value=4.8 Score=33.94 Aligned_cols=83 Identities=8% Similarity=0.015 Sum_probs=57.1
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC---Chh----hhh-HHHHHHHHhhcC------CCC
Q 011744 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI---RVD----KIT-EYLCDPLQRCLK------DDD 94 (478)
Q Consensus 29 ~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i---~~~----e~~-~~l~~~i~~~l~------~~~ 94 (478)
..+-+.-..+.+++....++..|+|-++++||.++..||..|-.+ +++ +++ ..++..+.+++. ..+
T Consensus 33 ~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~ 112 (171)
T 1juq_A 33 YIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVS 112 (171)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSC
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCC
Confidence 345556666666777788899999999999999999999966543 111 111 134555666664 246
Q ss_pred hHHHHHHHHHHHHHHhh
Q 011744 95 PYVRKTAAICVAKLYDI 111 (478)
Q Consensus 95 ~~VRk~A~~al~~i~~~ 111 (478)
+.||+++...+..-...
T Consensus 113 ~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 113 EKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999998877754443
No 129
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=81.94 E-value=4.5 Score=44.36 Aligned_cols=108 Identities=8% Similarity=0.020 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHhhcCCCC-HHHHHHHHHHhcCC--Ch-h-hhhHHHHHHHHhhcCC------------CChHHHHHHHH
Q 011744 41 PDLAILAVNTFVKDSQDPN-PLIRALAVRTMGCI--RV-D-KITEYLCDPLQRCLKD------------DDPYVRKTAAI 103 (478)
Q Consensus 41 ~e~~~l~in~l~kdL~~~n-~~vr~~AL~~l~~i--~~-~-e~~~~l~~~i~~~l~~------------~~~~VRk~A~~ 103 (478)
++.-..+.+.+.+-|.|++ ..||..|-.+|+.+ +. + ...+.++....+.+.. ++...|-.|++
T Consensus 838 ~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVL 917 (997)
T 1vsy_5 838 EEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVL 917 (997)
T ss_dssp TTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHH
Confidence 3433445678888899999 99999999999876 23 2 3344555555554422 11257788999
Q ss_pred HHHHHHhhcccccccccHHHHHHHhhc----CCChhhHHHHHHHHHHHhh
Q 011744 104 CVAKLYDINAELVEDRGFLESLKDLIS----DNNPMVVANAVAALAEIEE 149 (478)
Q Consensus 104 al~~i~~~~p~~~~~~~~~~~l~~lL~----d~~~~V~~~a~~~l~~i~~ 149 (478)
+|+.+....|-.+|.+.|+|.+...|. |+.| |..++=.++.+..+
T Consensus 918 gL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkr 966 (997)
T 1vsy_5 918 GLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 999999999999864589987766543 4333 55666666666543
No 130
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=81.34 E-value=2.3 Score=37.98 Aligned_cols=136 Identities=10% Similarity=0.111 Sum_probs=81.9
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhccc-CchHHHHHHHHHHhhcCCCCHH-HHHHHHHHhcCCC--hhhhhHHHHHHHHh
Q 011744 13 DVVNCMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPNPL-IRALAVRTMGCIR--VDKITEYLCDPLQR 88 (478)
Q Consensus 13 ~ii~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~~l~in~l~kdL~~~n~~-vr~~AL~~l~~i~--~~e~~~~l~~~i~~ 88 (478)
.+-.+..+...+.+-++...+...... +++..- .+..+... -+|=. +-.+|-+.++.+. .|+ .+.+.+.+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~-~~~~~l~~--~~nWd~~D~~a~~~~g~~~~~~p~---~~~~~l~~ 138 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINETHIP-FLEELIVT--KSWWDSVDSIVPTFLGDIFLKHPE---LISAYIPK 138 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHH-HHHHHHTS--SCCHHHHHHHTTTHHHHHHHHCGG---GGGGTHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHcc--CCChHHHHHhhHHHHHHHHHHCHH---HHHHHHHH
Confidence 445577888777776666666543322 233221 22233332 23332 2334434333321 233 12334888
Q ss_pred hcCCCChHHHHHHHHHHHHHHh-hcccccccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCCCCccccc
Q 011744 89 CLKDDDPYVRKTAAICVAKLYD-INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (478)
Q Consensus 89 ~l~~~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~ 159 (478)
.+.|+++++|+.|+.++...+. .+|+ ...+.+..++.|++.-|+.+...+|.++...+++....++
T Consensus 139 W~~s~~~w~rR~ai~~~l~~~~~~d~~-----~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 139 WIASDNIWLQRAAILFQLKYKQKMDEE-----LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp HHHSSCHHHHHHHHHTTTTCGGGCCHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 8899999999999988754332 1222 3557788889999999999999999999988765444433
No 131
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=79.59 E-value=8.4 Score=34.19 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHhcCCC---hhhhhHHHHHHHHhhcC-CCChHHH-HHHHHHHHHHHhhcccccccccHHHHHHHhhc
Q 011744 56 QDPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLK-DDDPYVR-KTAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (478)
Q Consensus 56 ~~~n~~vr~~AL~~l~~i~---~~e~~~~l~~~i~~~l~-~~~~~VR-k~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~ 130 (478)
+++....|.+|+..+.... +++..+. +...+. .++..+- .-|..+++++...+|+.. .+.+.....
T Consensus 71 ~~~~~E~r~~ai~~l~~~~k~~~~~~l~~----~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~-----~~~l~~W~~ 141 (232)
T 3jxy_A 71 DLPEREFQAAALDIMQKYKKHINETHIPF----LEELIVTKSWWDSVDSIVPTFLGDIFLKHPELI-----SAYIPKWIA 141 (232)
T ss_dssp TSSBHHHHHHHHHHHHHTGGGCCGGGHHH----HHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGGG-----GGTHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHccCCChHHHHHhhHHHHHHHHHHCHHHH-----HHHHHHHhc
Confidence 5566778999998886431 2333332 333333 3555543 334466678888888733 366778889
Q ss_pred CCChhhHHHHHHHHHHHhhhCCCCcccccHHHHHHHHHhcccCChhhHHHH---HHHHhhccC
Q 011744 131 DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFI---LDALSRYKA 190 (478)
Q Consensus 131 d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~q~~l---l~~l~~~~~ 190 (478)
|+++-+++.|+..+..-.... . .. ..+..+...+.+.+.+.|..+ |+-.++-.|
T Consensus 142 s~~~w~rR~ai~~~l~~~~~~-d--~~---~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p 198 (232)
T 3jxy_A 142 SDNIWLQRAAILFQLKYKQKM-D--EE---LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP 198 (232)
T ss_dssp SSCHHHHHHHHHTTTTCGGGC-C--HH---HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred CCchHHHHHHHHHHHHHHhCC-C--HH---HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH
Confidence 999999998876653321111 1 11 223333344556667777654 555555544
No 132
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=79.28 E-value=3.1 Score=45.61 Aligned_cols=96 Identities=9% Similarity=0.038 Sum_probs=63.8
Q ss_pred HhccCCCh-hHHHH-HHHHHHHhccc--CchHHHHHHHHHHhhcC-CCCHHHHHHHHHHhcC-------CChhhhhHHHH
Q 011744 16 NCMQTENL-ELKKL-VYLYLINYAKS--QPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGC-------IRVDKITEYLC 83 (478)
Q Consensus 16 ~l~~s~~~-~~Krl-~yl~l~~~~~~--~~e~~~l~in~l~kdL~-~~n~~vr~~AL~~l~~-------i~~~e~~~~l~ 83 (478)
.+...++. ++.++ ++..+..+... .++..-.+++.+..-.+ +++- .|..+|.++-. +-+++-.+.+.
T Consensus 767 ~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~ 845 (997)
T 1vsy_5 767 GLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKIL 845 (997)
T ss_dssp TTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTH
T ss_pred HHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 33444444 66677 56656655433 35566667788876665 5666 88888887432 12233335677
Q ss_pred HHHHhhcCCCC-hHHHHHHHHHHHHHHhhc
Q 011744 84 DPLQRCLKDDD-PYVRKTAAICVAKLYDIN 112 (478)
Q Consensus 84 ~~i~~~l~~~~-~~VRk~A~~al~~i~~~~ 112 (478)
..|.++|.|+. .-||..|+.++.-+.+-.
T Consensus 846 ~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 846 EFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 78999999999 999999999998776654
No 133
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=77.46 E-value=12 Score=32.99 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=51.5
Q ss_pred HHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCC------------ChhhhhHHHHHHHHhhcC-CCChH
Q 011744 30 YLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI------------RVDKITEYLCDPLQRCLK-DDDPY 96 (478)
Q Consensus 30 yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i------------~~~e~~~~l~~~i~~~l~-~~~~~ 96 (478)
.+.+.-..+.+++....++..|+|-|+++||.++..||..|-.+ ++.++.+. +.+++. ..++.
T Consensus 26 ~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~----l~~l~~~~~~~~ 101 (220)
T 1dvp_A 26 ILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEM----FSSFLESTPHEN 101 (220)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHH----HHHHHHHCSCHH
T ss_pred HHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHH----HHHHhcCCCcHH
Confidence 34455566666677778899999999999999999999866543 23334444 444443 46788
Q ss_pred HHHHHHHHHHH
Q 011744 97 VRKTAAICVAK 107 (478)
Q Consensus 97 VRk~A~~al~~ 107 (478)
||+++...+..
T Consensus 102 Vk~kil~li~~ 112 (220)
T 1dvp_A 102 VRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888766554
No 134
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=71.90 E-value=32 Score=28.29 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=61.2
Q ss_pred CCCchhhHHHHH-HhccCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcC-CCCHHHHHHHHHHhcCC----Chh-
Q 011744 4 GKDVSSLFTDVV-NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCI----RVD- 76 (478)
Q Consensus 4 G~d~~~~~~~ii-~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~-~~n~~vr~~AL~~l~~i----~~~- 76 (478)
|.+.+.-+-..+ ++.+....+.---+.+-+.-..+.+++....++.+|+|-++ ++|+.++-.||..+-.+ +.+
T Consensus 10 ~~p~~s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~f 89 (157)
T 1elk_A 10 GNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRF 89 (157)
T ss_dssp SCGGGSHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCCcHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 444442333333 34443333332333444555566666778888999999998 58999999999866532 221
Q ss_pred --hhh-HHHHHH-HHhhcC---CCChHHHHHHHHHHHHH
Q 011744 77 --KIT-EYLCDP-LQRCLK---DDDPYVRKTAAICVAKL 108 (478)
Q Consensus 77 --e~~-~~l~~~-i~~~l~---~~~~~VRk~A~~al~~i 108 (478)
+++ ..+... +.+++. +++..||+++...+..-
T Consensus 90 h~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 90 HVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 221 134444 455553 24558999988766643
No 135
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=71.41 E-value=18 Score=32.09 Aligned_cols=20 Identities=5% Similarity=0.185 Sum_probs=12.0
Q ss_pred HHHHHhhcCCChhhHHHHHH
Q 011744 123 ESLKDLISDNNPMVVANAVA 142 (478)
Q Consensus 123 ~~l~~lL~d~~~~V~~~a~~ 142 (478)
+.+.....|++.-+++.|+.
T Consensus 111 ~~~~~W~~s~~~w~rR~ai~ 130 (235)
T 1t06_A 111 DVADKWIASGDELKMSAGWS 130 (235)
T ss_dssp HHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHH
Confidence 45555666666666666655
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=70.53 E-value=40 Score=27.07 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=39.3
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhh-cCChhHHHHHHHHHHHHHhhCccchh
Q 011744 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILA 276 (478)
Q Consensus 205 ~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~~~~~~~ 276 (478)
+.+...|++...+.+..+.. +++.-+ .++..+.+-+ ++++++.+.||..+..++++-..-|.
T Consensus 16 ~~l~~~dw~~ileicD~I~~------~~~~~k----~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~ 78 (140)
T 3ldz_A 16 EMNTAEDWGLILDICDKVGQ------SRTGPK----DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFH 78 (140)
T ss_dssp TTSSSCCHHHHHHHHHHHTT------STTHHH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHC------CCcCHH----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 45667788888887665542 222222 3344444444 58899999999988888876444443
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=67.95 E-value=48 Score=26.98 Aligned_cols=63 Identities=10% Similarity=-0.004 Sum_probs=39.5
Q ss_pred hhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHH-HhhcCChhHHHHHHHHHHHHHhhCccchh
Q 011744 204 TPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLV-TLLSAEPEIQYVALRNINLIVQRRPTILA 276 (478)
Q Consensus 204 ~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~~~~ir~~aL~~l~~l~~~~~~~~~ 276 (478)
.+.+...|++...+.+..+.. +++.-+ .++..|. ++-++++++...||..+..++++-..-|.
T Consensus 21 s~~l~~~dw~~ileicD~I~~------~~~~pk----~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh 84 (149)
T 3g2s_A 21 NPLNKELDWASINGFCEQLNE------DFEGPP----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFH 84 (149)
T ss_dssp CTTCSSCCHHHHHHHHHHGGG------SSSHHH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHC------CCCcHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 345667788888787665543 222222 2334444 34468999999999999998886544443
No 138
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=65.19 E-value=65 Score=27.54 Aligned_cols=141 Identities=17% Similarity=0.204 Sum_probs=83.7
Q ss_pred CCCchhhHHHHHHhccCCChhHHHHHHHHHHHhcccC---chHHHHHHHHHHhhcCCCCHHHHHHHHHHhc------CCC
Q 011744 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLIRALAVRTMG------CIR 74 (478)
Q Consensus 4 G~d~~~~~~~ii~l~~s~~~~~Krl~yl~l~~~~~~~---~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~------~i~ 74 (478)
..|...+|-.+++.+.+ ..++.++--++.=..-+ |-....+.+.+...+. |...-..-++... ++.
T Consensus 6 S~Elq~yf~~It~a~~~---~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~ 80 (196)
T 4atg_A 6 PKELQLYFDKILSMIKS---DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVF 80 (196)
T ss_dssp CHHHHHHHHHHHHHHTS---TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHHHHHHHHHh---HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCC
Confidence 34555677788887766 34555544433211111 2233334445555444 4332222233222 345
Q ss_pred hhhhhHHHHHHHHhhcCC---CChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcC--CChhhHHHHHHHHHHH
Q 011744 75 VDKITEYLCDPLQRCLKD---DDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISD--NNPMVVANAVAALAEI 147 (478)
Q Consensus 75 ~~e~~~~l~~~i~~~l~~---~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d--~~~~V~~~a~~~l~~i 147 (478)
-......++|.+..|+.. ....+|..|+..+..+++++.+..+. +.+...+.+.+.| .+.+...+|+..+..+
T Consensus 81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 567778889998888854 22289999999999999987654431 1344555554545 5677889999888887
Q ss_pred hh
Q 011744 148 EE 149 (478)
Q Consensus 148 ~~ 149 (478)
..
T Consensus 161 G~ 162 (196)
T 4atg_A 161 SK 162 (196)
T ss_dssp CH
T ss_pred HH
Confidence 54
No 139
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=64.48 E-value=34 Score=36.40 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=73.1
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc---cccccccHHHHHHHhhcC---CChhhHHHHHHHHHHHhh
Q 011744 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISD---NNPMVVANAVAALAEIEE 149 (478)
Q Consensus 76 ~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p---~~~~~~~~~~~l~~lL~d---~~~~V~~~a~~~l~~i~~ 149 (478)
..+++.+.|.+..++-+++..+...+..|+..+.-..| +.+-+ ..++.+...|.. ..+.=..+|+.++..++.
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r 412 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVIR 412 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999888 98764 677888888866 455556677788776655
Q ss_pred hCC--CCcccccHHHHHHHHHhcccCChhhHHHHHHHHh
Q 011744 150 NSS--RPIFEITSHTLSKLLTALNECTEWGQVFILDALS 186 (478)
Q Consensus 150 ~~~--~~~~~~~~~~~~~Ll~~l~~~~~~~q~~ll~~l~ 186 (478)
.-. +.+..-..+.+.-++..+.-.|+--....++++.
T Consensus 413 ~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~ 451 (799)
T 1vsy_4 413 FIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIV 451 (799)
T ss_dssp HHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Confidence 431 1111222233333333333344444444455554
No 140
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=62.61 E-value=1e+02 Score=28.83 Aligned_cols=177 Identities=12% Similarity=0.079 Sum_probs=90.6
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccc-------c-ccccHHHHHHHhhcCCChhhHHHHHHHHHHHhhhCC
Q 011744 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL-------V-EDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (478)
Q Consensus 81 ~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~-------~-~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 152 (478)
.++..+...+..=+--.||.++.....+.+..++. + ..+++...|...-. ++.+..++-..|.++.++.
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e- 154 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHE- 154 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSH-
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhH-
Confidence 45556777777778889999999888887754421 1 11233334433333 3344444444555554432
Q ss_pred CCcccccHHHHHHHHH---------hcccCChhhHH-HHHHHHhhccCCChH--------HHHHHHHHhhhhhcCCChHH
Q 011744 153 RPIFEITSHTLSKLLT---------ALNECTEWGQV-FILDALSRYKAADAR--------EAENIVERVTPRLQHANCAV 214 (478)
Q Consensus 153 ~~~~~~~~~~~~~Ll~---------~l~~~~~~~q~-~ll~~l~~~~~~~~~--------~~~~~l~~l~~~l~~~~~~V 214 (478)
...+.++. -+. ...|... -.+..++.+-..... ....+......++++.|...
T Consensus 155 --------~la~~iL~~~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVT 225 (341)
T 1upk_A 155 --------PLAKIILWSEQFYDFFRYVE-MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVT 225 (341)
T ss_dssp --------HHHHHHHHSGGGGHHHHHTT-CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred --------HHHHHHhccHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchh
Confidence 11112221 110 1111100 011222211111111 11234455556889999999
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHH--HhhhHHHHhhc-CChhHHHHHHHHHHHHHh
Q 011744 215 VLSAVKMILQQMELITSTDVVRNLCK--KMAPPLVTLLS-AEPEIQYVALRNINLIVQ 269 (478)
Q Consensus 215 ~~ea~~~i~~~~~~~~~~~~~~~~~~--~~~~~l~~ll~-~~~~ir~~aL~~l~~l~~ 269 (478)
+..++++++.+.-.-++......++. .-...+..+|. +..++++.|...+..++.
T Consensus 226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 99999999887410011111111111 11223456775 678999999999988886
No 141
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=59.00 E-value=57 Score=25.96 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=49.6
Q ss_pred HHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhhHHHHHHH
Q 011744 66 AVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAA 143 (478)
Q Consensus 66 AL~~l~~i~~~e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~~~~V~~~a~~~ 143 (478)
|.+.++.++.++ +..++|.+...++|.|..|....+.-+.++ |+ .++|.+.+.|++.|..=....+..
T Consensus 17 a~~~L~~~~~~~-i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~----~~-----~l~p~I~~vl~s~D~~W~ywil~~ 84 (134)
T 3ut4_A 17 TIDQLCKLIDNE-IEPIIFDLLKWLQDYNWPIAKDILPVVVLH----QS-----IAMPHILTILQGNDIMWKYWVIKL 84 (134)
T ss_dssp THHHHTTCCHHH-HHHHHHHHHGGGSCTTSTTHHHHHHHHHHT----HH-----HHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHhCCHHH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHc----cH-----hhHHHHHHHHHcCChHHHHHHHHH
Confidence 566677775555 456788999999999999988877766653 32 467888888888888766655533
No 142
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=58.54 E-value=1.3e+02 Score=28.86 Aligned_cols=159 Identities=9% Similarity=0.109 Sum_probs=91.9
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHH----HHHHHHHHHhcccch-hHHHHHHHHHHHHHhhCC-cchHHH
Q 011744 313 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAE----RCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYP-NTYESI 386 (478)
Q Consensus 313 v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~----~~i~~ll~ll~~~~~-~v~~~~~~~l~~i~~~~~-~~~~~~ 386 (478)
+..|++-+.++|+.-|..+-..+.++=.++...-. .+-+.+..+.-.... .-..++.+.++.+++++. -..+.-
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeeh 210 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH 210 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHH
Confidence 44455555666666655555445444444432111 112333333322222 234678888888888753 122222
Q ss_pred HHHHHhhc---CCCC-hhhHHHHHHHHhhcccCccCC-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHH
Q 011744 387 IATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM 461 (478)
Q Consensus 387 i~~L~~~l---~~~~-~~~~~~~~~~ilGE~~~~~~~-~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~ 461 (478)
...+.+.| -... -+......++++..|.+.-+. +..+++.++...+..++.-+-..|.-+..+....++++.+++
T Consensus 211 k~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i 290 (403)
T 3fga_B 211 KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI 290 (403)
T ss_dssp HHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 22222222 1211 233367778888888765443 678889998888888888888888888888887776656666
Q ss_pred HHHHHHHHHH
Q 011744 462 IQVTLKYYTC 471 (478)
Q Consensus 462 ~~~~l~~~~~ 471 (478)
...+|+.-++
T Consensus 291 ~~~lf~~la~ 300 (403)
T 3fga_B 291 MEPLFRQLAK 300 (403)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655444
No 143
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=54.37 E-value=91 Score=25.70 Aligned_cols=62 Identities=8% Similarity=0.129 Sum_probs=40.1
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhh-cCChhHHHHHHHHHHHHHhhCccchh
Q 011744 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILA 276 (478)
Q Consensus 205 ~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~~~~~~~ 276 (478)
+.+...|++...+.+..+.. +++.-+ .++..|.+-+ ++++++++.||..+..++++-...|.
T Consensus 26 ~~~~~~Dw~~~leicD~I~~------~~~~~k----eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh 88 (163)
T 1x5b_A 26 EYNTTEDWSLIMDICDKVGS------TPNGAK----DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFH 88 (163)
T ss_dssp TTCSSCCHHHHHHHHHHHHH------SSSHHH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCCCcCHHHHHHHHHHHhC------CCccHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35567788888887776654 122222 2344444444 58999999999999999886443333
No 144
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=52.98 E-value=1.7e+02 Score=28.51 Aligned_cols=159 Identities=9% Similarity=0.103 Sum_probs=84.4
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhH----HHHHHHHHHHhcccch-hHHHHHHHHHHHHHhhCC-cchHHH
Q 011744 313 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA----ERCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYP-NTYESI 386 (478)
Q Consensus 313 v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~----~~~i~~ll~ll~~~~~-~v~~~~~~~l~~i~~~~~-~~~~~~ 386 (478)
+..|++.+.+.|+.-|..+-..+.++=.++...- +.+-+.+.+++-.... .-..|+.+.++.+++++. .+.+.-
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeeh 243 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH 243 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHH
Confidence 3444445555555555444444444444432211 1122233333322221 233678888888887643 222222
Q ss_pred HHHHHhhc----CCCChhhHHHHHHHHhhcccCccCC-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHH
Q 011744 387 IATLCESL----DTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM 461 (478)
Q Consensus 387 i~~L~~~l----~~~~~~~~~~~~~~ilGE~~~~~~~-~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~ 461 (478)
...+...| ..-.-+......++++..|.+.-+. +..+++.++...+..++.=+-..|.-+..+.-..+.++.++.
T Consensus 244 k~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i 323 (449)
T 2npp_B 244 KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI 323 (449)
T ss_dssp HHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 22222221 2111233456777777777655433 567888888777877777777788888888776666556666
Q ss_pred HHHHHHHHHH
Q 011744 462 IQVTLKYYTC 471 (478)
Q Consensus 462 ~~~~l~~~~~ 471 (478)
...+|+.-++
T Consensus 324 ~~~lF~~la~ 333 (449)
T 2npp_B 324 MEPLFRQLAK 333 (449)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 145
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=52.29 E-value=1.1e+02 Score=26.09 Aligned_cols=73 Identities=11% Similarity=0.139 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHhh----CCcchHHHHHHHHhhcCCCC-hhhHHHHHHHHhhccc
Q 011744 343 ERAAERCISVLLELIKI---KVNYVVQEAIIVIKDIFRR----YPNTYESIIATLCESLDTLD-EPEAKASMIWIIGEYA 414 (478)
Q Consensus 343 ~~~~~~~i~~ll~ll~~---~~~~v~~~~~~~l~~i~~~----~~~~~~~~i~~L~~~l~~~~-~~~~~~~~~~ilGE~~ 414 (478)
.+..-..+..++.++-. ++..+++.+...+..+.++ +|..+.++...+.+.+-|-. ....+-.+++.+++.|
T Consensus 82 epYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 82 DPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 34445556666666432 1226888888888888765 46677788888877665433 3334777888888888
Q ss_pred C
Q 011744 415 E 415 (478)
Q Consensus 415 ~ 415 (478)
.
T Consensus 162 ~ 162 (196)
T 4atg_A 162 K 162 (196)
T ss_dssp H
T ss_pred H
Confidence 5
No 146
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=51.86 E-value=18 Score=35.77 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=52.4
Q ss_pred HHHHHHhhcC----------CCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhhHHHHHHHHHHHh
Q 011744 82 LCDPLQRCLK----------DDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (478)
Q Consensus 82 l~~~i~~~l~----------~~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~ 148 (478)
++..+.+++. +.+|.+---|+.=++.+.+.+|+- +..-+..+.+-+++.++|+.|+..|+.++..+.
T Consensus 396 llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 396 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4555666665 246777777888888888888853 333356788889999999999999999998876
Q ss_pred hh
Q 011744 149 EN 150 (478)
Q Consensus 149 ~~ 150 (478)
.+
T Consensus 476 ~~ 477 (480)
T 1ho8_A 476 GY 477 (480)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 147
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=49.79 E-value=1.8e+02 Score=27.79 Aligned_cols=159 Identities=9% Similarity=0.103 Sum_probs=77.6
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhH----HHHHHHHHHHhcccch-hHHHHHHHHHHHHHhhCC-cchHHH
Q 011744 313 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA----ERCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYP-NTYESI 386 (478)
Q Consensus 313 v~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~----~~~i~~ll~ll~~~~~-~v~~~~~~~l~~i~~~~~-~~~~~~ 386 (478)
+..|++-..+.|+.-|..+-..+.++=.++...- +.+-+.+.++.-.... .-..|+.+.++.+++++. ...+.-
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeeh 255 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH 255 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHH
Confidence 3334444455555555444444444444432211 1222333444333222 233577777777777653 122221
Q ss_pred HHHHHhhc----CCCChhhHHHHHHHHhhcccCccCC-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccCCCcchHHH
Q 011744 387 IATLCESL----DTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM 461 (478)
Q Consensus 387 i~~L~~~l----~~~~~~~~~~~~~~ilGE~~~~~~~-~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~~~~~~~~~~ 461 (478)
...+.+.| ..-.-+......++++-.|.+.-+. +..+++.++...+..++.=+-..|.-+..+.-..+.++.++.
T Consensus 256 k~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i 335 (392)
T 2jak_A 256 KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI 335 (392)
T ss_dssp HHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 22222211 1111122355666666666554333 566777777666666655556667777777766665555555
Q ss_pred HHHHHHHHHH
Q 011744 462 IQVTLKYYTC 471 (478)
Q Consensus 462 ~~~~l~~~~~ 471 (478)
...+|+.-++
T Consensus 336 ~~~lF~~la~ 345 (392)
T 2jak_A 336 MEPLFRQLAK 345 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=47.85 E-value=1.4e+02 Score=26.00 Aligned_cols=69 Identities=13% Similarity=0.236 Sum_probs=41.8
Q ss_pred HHHHHhh-hhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHH-hhcCChhHHHHHHHHHHHHHhhCccch
Q 011744 198 NIVERVT-PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVT-LLSAEPEIQYVALRNINLIVQRRPTIL 275 (478)
Q Consensus 198 ~~l~~l~-~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~~~~ir~~aL~~l~~l~~~~~~~~ 275 (478)
..++... +.+...|++..++.+..+.. +++.-+ .++..|.+ +-++++++.+.||..|..++++-..-|
T Consensus 11 ~~i~kAT~~~~~~~dw~~ileicD~I~~------~~~~~k----~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 11 RLLDKATSQLLLETDWESILQICDLIRQ------GDTQAK----YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHT------TSSCHH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhC------CCccHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHH
Confidence 3444433 34556788888887776653 111111 23334443 446899999999999999988644433
Q ss_pred h
Q 011744 276 A 276 (478)
Q Consensus 276 ~ 276 (478)
.
T Consensus 81 ~ 81 (226)
T 3zyq_A 81 H 81 (226)
T ss_dssp H
T ss_pred H
Confidence 3
No 149
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=45.60 E-value=1.5e+02 Score=27.21 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHHHHHHhhcccccc
Q 011744 91 KDDDPYVRKTAAICVAKLYDINAELVE 117 (478)
Q Consensus 91 ~~~~~~VRk~A~~al~~i~~~~p~~~~ 117 (478)
.+..+.+|..|+..++...|.+|..+.
T Consensus 80 ~~~~~~~rE~aarII~ssLRNNP~Al~ 106 (315)
T 3qml_C 80 ENLPLTLRELSTRVITSCLRNNPPVVE 106 (315)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCChhHHHHHHHHHHHHHccCHHHHH
Confidence 445667999999999999998886553
No 150
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=45.17 E-value=3.8e+02 Score=30.18 Aligned_cols=59 Identities=8% Similarity=0.188 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHhhCCcch---HHHHHHHHhhcCCCChhhHHHH
Q 011744 347 ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY---ESIIATLCESLDTLDEPEAKAS 405 (478)
Q Consensus 347 ~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~~~~~~~---~~~i~~L~~~l~~~~~~~~~~~ 405 (478)
+.++..++.....+++.-.+.+.+++..+...+|+.- ...+..+++++++.+.+++++.
T Consensus 437 qeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~~l~giLD~l~~l~~~QiRkl 498 (1323)
T 3s4w_B 437 QEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFVKGILDYLENMSPQQIRKI 498 (1323)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHGGGGGGGGCCHHHHHHH
T ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 3445555554444444444567778888877777532 2346677788888877777643
No 151
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=44.35 E-value=1.4e+02 Score=24.83 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=39.6
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhh-cCChhHHHHHHHHHHHHHhhCccch
Q 011744 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTIL 275 (478)
Q Consensus 205 ~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~ir~~aL~~l~~l~~~~~~~~ 275 (478)
+.+...|++...+.+..+.. +++.-+ .++..|.+-+ ++++++++.||..+..++++-..-|
T Consensus 24 ~~l~~~Dw~~ileicD~I~~------~~~~~k----~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~F 85 (171)
T 1juq_A 24 PSNRQEDWEYIIGFCDQINK------ELEGPQ----IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRF 85 (171)
T ss_dssp TTCSSCCHHHHHHHHHHHHH------STTHHH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHc------CCccHH----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 35567788888887776664 222222 2344444444 5899999999999999988643333
No 152
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=44.00 E-value=86 Score=28.86 Aligned_cols=105 Identities=9% Similarity=0.121 Sum_probs=61.1
Q ss_pred cCCChhHHHHHHHHHHHhcccCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC--CChH
Q 011744 19 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPY 96 (478)
Q Consensus 19 ~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kdL~~~n~~vr~~AL~~l~~i~~~e~~~~l~~~i~~~l~~--~~~~ 96 (478)
.+.....|.++|-.++..+.+||+..-.+.+. -|.++..+.+.+..+... ..+.
T Consensus 80 ~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~------------------------~p~fv~~lf~~L~~~~~~~~~~~~ 135 (315)
T 3qml_C 80 ENLPLTLRELSTRVITSCLRNNPPVVEFINES------------------------FPNFKSKIMAALSNLNDSNHRSSN 135 (315)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------CTTHHHHHHHHHHHHHCC--CCCH
T ss_pred ccCChhHHHHHHHHHHHHHccCHHHHHHHHHh------------------------ChhHHHHHHHHHHHHhhcccchhH
Confidence 44566678888888887888877754333321 133444444555444433 2456
Q ss_pred HHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCC--ChhhHHHHHHHHHHHh
Q 011744 97 VRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN--NPMVVANAVAALAEIE 148 (478)
Q Consensus 97 VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i~ 148 (478)
+..|+.+++.+-.-.+|+.+...+ ++.|.+++.-. ++.++.-++..+..+.
T Consensus 136 ~l~KR~LsII~~L~~~~~~F~~~~-m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 136 ILIKRYLSILNELPVTSEDLPIYS-TVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHSCCCSTTC--CC-HHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHhhhhcc-HHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 888888888776666665433323 25555544333 7888877776666554
No 153
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=39.92 E-value=1.3e+02 Score=23.43 Aligned_cols=36 Identities=0% Similarity=-0.032 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHH
Q 011744 290 IYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (478)
Q Consensus 290 ~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r 328 (478)
.+|+..+.-++. +.+..+.|++.+.++++..+++-|
T Consensus 22 ~sI~~~s~w~l~---h~~~a~~Iv~~i~~~l~~~~~~~K 57 (132)
T 4flb_A 22 ESIQGLSSWCIE---NKKHHSTIVYHWMKWLRRSAYPHR 57 (132)
T ss_dssp HHHHHHHHHHHH---TGGGHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHH---hHHHHHHHHHHHHHHHHcCChhhH
Confidence 444444433333 334455555555555555554433
No 154
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=37.22 E-value=1.6e+02 Score=23.67 Aligned_cols=61 Identities=8% Similarity=0.100 Sum_probs=40.1
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHH-hhcCChhHHHHHHHHHHHHHhhCccch
Q 011744 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVT-LLSAEPEIQYVALRNINLIVQRRPTIL 275 (478)
Q Consensus 205 ~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~~~~ir~~aL~~l~~l~~~~~~~~ 275 (478)
+.+.+.|++...+.+..+.. +++.-+ .++..+.+ +-++++++.+.||..+..++++-..-|
T Consensus 12 ~~l~~~dw~~~leicD~I~~------~~~~~k----~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~f 73 (148)
T 1mhq_A 12 PSMSEQDWSAIQNFCEQVNT------DPNGPT----HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKF 73 (148)
T ss_dssp TTCSSCCHHHHHHHHHHHHH------SSHHHH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCCcCHHHHHHHHHHHHc------CCccHH----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 45567788888887776664 222222 23444443 446899999999999999988744434
No 155
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=33.42 E-value=2.6e+02 Score=24.97 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHhcCcccHHHHHHHHH
Q 011744 290 IYVKMEKLEIMIKLASDRNIDQVLLEFK 317 (478)
Q Consensus 290 ~~ir~~al~lL~~l~~~~n~~~Iv~~L~ 317 (478)
.++|...|.++..+...++ .+++..|+
T Consensus 116 E~LRLtsLGVIgaLvK~dd-~eVi~fLL 142 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDE-QEVINFLL 142 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCC-HHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCc-HHHHHHHH
Confidence 6899999999999885544 34444433
No 156
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=32.22 E-value=3.1e+02 Score=25.50 Aligned_cols=63 Identities=13% Similarity=0.213 Sum_probs=41.3
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 011744 315 EFKEYATEVDVDFVRKAVRAIGRCAIKL--------ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (478)
Q Consensus 315 ~L~~~l~~~d~~~r~~~v~~i~~l~~~~--------~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~ 377 (478)
.+.+|+..++.++..++......+-.++ ....+|+++...+++..++-..+..++..+++++-
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLl 238 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLL 238 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence 4556777777777777777666554443 24566777777776666554456677777777764
No 157
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=32.08 E-value=1.7e+02 Score=23.27 Aligned_cols=41 Identities=10% Similarity=0.330 Sum_probs=29.3
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q 011744 296 KLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGR 337 (478)
Q Consensus 296 al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~ 337 (478)
|+..|..+ +...+..++++|+.+++|.+.-+...++.-+..
T Consensus 17 a~~~L~~~-~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~ 57 (134)
T 3ut4_A 17 TIDQLCKL-IDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVL 57 (134)
T ss_dssp THHHHTTC-CHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 33444444 667788899999999999987776666655543
No 158
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=31.91 E-value=1.2e+02 Score=24.68 Aligned_cols=100 Identities=9% Similarity=-0.067 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHhhcC-CCCHHHHHHHHHHhc------------CCChhhhhHHHHHHHHhhcCCCCh
Q 011744 29 VYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMG------------CIRVDKITEYLCDPLQRCLKDDDP 95 (478)
Q Consensus 29 ~yl~l~~~~~~~~e~~~l~in~l~kdL~-~~n~~vr~~AL~~l~------------~i~~~e~~~~l~~~i~~~l~~~~~ 95 (478)
+-+-+.-....+++...-++.+|+|-++ ++|+.+.-.||..|- .+++.++.+.++-.+..--.+...
T Consensus 36 ~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~ 115 (152)
T 3rru_A 36 QFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPL 115 (152)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcH
Q ss_pred HHHHHHHHHHHHHHhhcccccccccHHHHHHHhh
Q 011744 96 YVRKTAAICVAKLYDINAELVEDRGFLESLKDLI 129 (478)
Q Consensus 96 ~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL 129 (478)
.||++....+..-....+..-+- ..+..+.+.|
T Consensus 116 ~Vk~kil~li~~Wa~~F~~~p~l-~~i~~~Y~~L 148 (152)
T 3rru_A 116 DIQNRILNFIKTWSQGFPGGVDV-SEVKEVYLDL 148 (152)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHH
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.32 E-value=2.8e+02 Score=23.77 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=37.2
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHH-HhhcCChhHHHHHHHHHHHHHhhCcc
Q 011744 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLV-TLLSAEPEIQYVALRNINLIVQRRPT 273 (478)
Q Consensus 205 ~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~~~~ir~~aL~~l~~l~~~~~~ 273 (478)
+.+.+.|++...+.+..+.. +++.-+ .++..|. ++-++++++++.||..|..++++-..
T Consensus 16 ~~~~~~dw~~~leicd~i~~------~~~~~k----~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~ 75 (220)
T 1dvp_A 16 HLRLEPDWPSILLICDEINQ------KDVTPK----NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA 75 (220)
T ss_dssp TTCSSCCHHHHHHHHHHHHT------TSSCHH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH
T ss_pred CCCCCcCHHHHHHHHHhhcC------CCcCHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH
Confidence 45557788888776665543 111111 2333444 34468999999999999998886433
No 160
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=28.04 E-value=5.5e+02 Score=26.96 Aligned_cols=127 Identities=9% Similarity=0.036 Sum_probs=59.1
Q ss_pred HHHHhhhhhcCCChHHHHHHHHHHHHhhhhcCChHHHHHHHHHhhhHHHHhhc-CC----hhHHHHHHHHHHHHHhhCcc
Q 011744 199 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AE----PEIQYVALRNINLIVQRRPT 273 (478)
Q Consensus 199 ~l~~l~~~l~~~~~~V~~ea~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~----~~ir~~aL~~l~~l~~~~~~ 273 (478)
.++.+..+-+..+..|...+...+..+.. .+ +.++.++.++..++..-+. ++ ...|..++.....+. +++
T Consensus 529 ~l~l~~~l~~E~~~~~w~~~~~~l~~~~~-~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~~r~~~~~~a~~~~--~~~ 603 (780)
T 1z5h_A 529 YRQRIRNFFDDEDHNVITAIVGQMEYLRM-LT--HAFDDDARAFCRSRMQFLTGKQDENLKIALGRVSRLYVMVD--ESY 603 (780)
T ss_dssp HHHHHGGGTTCCCHHHHHHHHHHHHHHHT-TC--STTHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--HHH
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHh-ch--HHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHhcC--CHH
Confidence 33333333344667777777776665533 21 2233333344443332221 11 224444444443331 122
Q ss_pred chhhccceeeeccCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 011744 274 ILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIG 336 (478)
Q Consensus 274 ~~~~~~~~~~~l~~dd~~ir~~al~lL~~l~~~~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~ 336 (478)
.+. -...|.....-++.+|..+.-....-+++ ++.+.++ |.++.+.+-|..++.+++
T Consensus 604 ~~~-a~~~f~~~~~i~~~lr~~v~~~~~~~g~~--~~~l~~~---~~~~~~~~~~~~~l~al~ 660 (780)
T 1z5h_A 604 AEE-MSKLFKDFDSAEPEMRSSIATAYALVTGD--LKGLLEK---FRSVDRDEDRVRIISAFG 660 (780)
T ss_dssp HHH-HHTTGGGGGGSCHHHHHHHHHHHHHHTCC--HHHHHHH---HHSCCSHHHHHHHHHHHT
T ss_pred HHH-HHHHHHhcCCCCHHHHHHHHHHHHHcCcH--HHHHHHH---HhcCCCHHHHHHHHHHhc
Confidence 222 11111100123567887777666655554 5554443 334556677777777765
No 161
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=25.34 E-value=1.4e+02 Score=23.08 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=25.5
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHHHHhhh
Q 011744 120 GFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (478)
Q Consensus 120 ~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 150 (478)
+....+..++.|..|+|..+++.+|..+.++
T Consensus 76 nvkn~l~~~l~D~rPSVkLAtisLLSiIIkK 106 (145)
T 2jby_A 76 NIKNTLTFALRDASPSVKLATLTLLASVIKK 106 (145)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 4567777789999999999999999876543
No 162
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=24.66 E-value=1.2e+02 Score=24.20 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhccc
Q 011744 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE 114 (478)
Q Consensus 77 e~~~~l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p~ 114 (478)
+.++.+++.+.+-|.+++++|+-||...+-.+.+..++
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~ 82 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS 82 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH
Confidence 44566666677777777788888887777777665443
No 163
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=22.64 E-value=5.1e+02 Score=24.75 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=21.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhhcc
Q 011744 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINA 113 (478)
Q Consensus 82 l~~~i~~~l~~~~~~VRk~A~~al~~i~~~~p 113 (478)
++-.+..++.+++|.=|...-..+.+||.+..
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~ 161 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFL 161 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhh
Confidence 34446667777777777777777777776654
No 164
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=22.46 E-value=6.9e+02 Score=26.21 Aligned_cols=81 Identities=11% Similarity=0.068 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCc--ccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccchhHHHHHH
Q 011744 292 VKMEKLEIMIKLASD--RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAI 369 (478)
Q Consensus 292 ir~~al~lL~~l~~~--~n~~~Iv~~L~~~l~~~d~~~r~~~v~~i~~l~~~~~~~~~~~i~~ll~ll~~~~~~v~~~~~ 369 (478)
+..+-=.++.++++. .|.+.-++.|...+.+..+..|..+++.+..++...|.. ..+..+++.++...+..+..+++
T Consensus 8 ~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~K-t~vyAaLVgllN~k~pe~G~~lv 86 (771)
T 1h2v_C 8 TEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEK-LTIYTTLVGLLNARNYNFGGEFV 86 (771)
T ss_dssp --CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHcCChhHHHHHH
Confidence 333444567778764 456677777777776666778889999999988877655 45667888888887666655555
Q ss_pred HHHH
Q 011744 370 IVIK 373 (478)
Q Consensus 370 ~~l~ 373 (478)
..+.
T Consensus 87 ~~l~ 90 (771)
T 1h2v_C 87 EAMI 90 (771)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 165
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=22.22 E-value=4.2e+02 Score=23.64 Aligned_cols=103 Identities=9% Similarity=0.121 Sum_probs=56.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCCh--hhhhH----------HHHHHHHhhc---CC----CChHHHHHHHHHHHHH
Q 011744 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITE----------YLCDPLQRCL---KD----DDPYVRKTAAICVAKL 108 (478)
Q Consensus 48 in~l~kdL~~~n~~vr~~AL~~l~~i~~--~e~~~----------~l~~~i~~~l---~~----~~~~VRk~A~~al~~i 108 (478)
+..+..||.+++ -|..||..|++-+. +++++ .+..+|...- .. ....-|-..++++.+.
T Consensus 5 i~qli~~L~~p~--~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 5 IYQWINELSSPE--TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHTSSTT--THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCch--hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 345556666443 47788877776432 33322 2333333222 11 1234577778888887
Q ss_pred Hhhcccccc---cccHHHHHHHhhcC--CC---hhhHHHHHHHHHHHhhhCC
Q 011744 109 YDINAELVE---DRGFLESLKDLISD--NN---PMVVANAVAALAEIEENSS 152 (478)
Q Consensus 109 ~~~~p~~~~---~~~~~~~l~~lL~d--~~---~~V~~~a~~~l~~i~~~~~ 152 (478)
.-.+|+.-. .+++.-.+...|+- ++ ..++.+++..++.+.+.+.
T Consensus 83 vAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd 134 (268)
T 2fv2_A 83 VASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDE 134 (268)
T ss_dssp HHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCc
Confidence 777887422 12333334444432 22 4568888988888887654
No 166
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=22.07 E-value=4.1e+02 Score=23.44 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=34.6
Q ss_pred HHHHHhhcccCc-cCC---HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcc
Q 011744 405 SMIWIIGEYAER-IDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLK 452 (478)
Q Consensus 405 ~~~~ilGE~~~~-~~~---~~~~l~~l~~~~~~~~~~vk~~il~a~~Kl~~~ 452 (478)
..+-+|||-... +-. ..+++..++++...++-++-..+|+++++...+
T Consensus 148 g~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~ 199 (260)
T 1hu3_A 148 GNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDF 199 (260)
T ss_dssp HHHHHHHHHHTTTCSCHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 556788885433 222 347788888887777778888889999988876
No 167
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=20.42 E-value=2.2e+02 Score=25.02 Aligned_cols=60 Identities=10% Similarity=0.190 Sum_probs=45.0
Q ss_pred HHhhhhcCHHHHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 011744 317 KEYATEVDVDFVRKAVRAIGRCAIKL----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (478)
Q Consensus 317 ~~~l~~~d~~~r~~~v~~i~~l~~~~----~~~~~~~i~~ll~ll~~~~~~v~~~~~~~l~~i~~ 377 (478)
..|+...+.+-|..++..+..++..- .+..+.|+.++-+++..+.+++..| ..+|..++.
T Consensus 135 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Y~kvm~ki~~~g~~~~~~E-~~Rl~~~l~ 198 (240)
T 2qc7_A 135 GEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASE-MTRIARLIE 198 (240)
T ss_dssp HHHHHSCSHHHHHHHTTHHHHHTTCSCHHHHHHHHHHHHHHHHHHHSCTTSHHHH-HHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHh
Confidence 35666667777888888877776553 2567889999999998888888877 667777764
No 168
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=20.29 E-value=4.7e+02 Score=26.50 Aligned_cols=94 Identities=11% Similarity=-0.002 Sum_probs=61.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcC----CCh-----h----hhhHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHhhccc
Q 011744 49 NTFVKDSQDPNPLIRALAVRTMGC----IRV-----D----KITEYLCDPLQRCL-KDDDPYVRKTAAICVAKLYDINAE 114 (478)
Q Consensus 49 n~l~kdL~~~n~~vr~~AL~~l~~----i~~-----~----e~~~~l~~~i~~~l-~~~~~~VRk~A~~al~~i~~~~p~ 114 (478)
..+..-++++++.+...++..+.. +.. + +....+...+.+.+ .+++..+|++|..++.++....|+
T Consensus 320 ~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~~ 399 (596)
T 4f52_E 320 GHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLDS 399 (596)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBCH
T ss_pred HHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCCh
Confidence 355566788888777777776552 221 1 12222333344433 469999999999999999888876
Q ss_pred ccccccHHHHHHHhhcC-CChhhHHHHHHHHHH
Q 011744 115 LVEDRGFLESLKDLISD-NNPMVVANAVAALAE 146 (478)
Q Consensus 115 ~~~~~~~~~~l~~lL~d-~~~~V~~~a~~~l~~ 146 (478)
.-. ...++.++.+ .+++++..++..+-+
T Consensus 400 e~R----~~iL~~LL~~~~~~~v~~~lI~~~Kd 428 (596)
T 4f52_E 400 QGK----YTLFRCLLNTSNHSGVEAFIIQNIKN 428 (596)
T ss_dssp HHH----HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 422 3677777754 778888888777653
Done!