Query 011745
Match_columns 478
No_of_seqs 157 out of 603
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04149 sat sulfate adenylylt 100.0 8E-131 2E-135 1018.8 39.8 383 64-467 2-387 (391)
2 COG2046 MET3 ATP sulfurylase ( 100.0 2E-129 4E-134 984.9 33.6 379 65-467 3-383 (397)
3 PRK05537 bifunctional sulfate 100.0 1E-125 2E-130 1022.8 39.2 390 65-468 1-392 (568)
4 cd00517 ATPS ATP-sulfurylase. 100.0 4E-122 1E-126 943.6 36.8 351 93-460 1-353 (353)
5 TIGR00339 sopT ATP sulphurylas 100.0 5E-121 1E-125 944.9 38.8 380 68-459 1-383 (383)
6 KOG4238 Bifunctional ATP sulfu 100.0 8.4E-91 1.8E-95 701.9 23.0 391 72-466 231-626 (627)
7 PF01747 ATP-sulfurylase: ATP- 100.0 9.5E-83 2.1E-87 614.4 20.4 213 236-461 1-215 (215)
8 KOG0636 ATP sulfurylase (sulfa 100.0 6.7E-66 1.5E-70 519.2 0.7 405 59-467 43-451 (466)
9 PF14306 PUA_2: PUA-like domai 100.0 2.9E-53 6.3E-58 393.1 10.4 159 66-229 1-160 (160)
10 KOG0636 ATP sulfurylase (sulfa 100.0 5.5E-55 1.2E-59 440.3 -2.6 350 99-468 11-363 (466)
11 cd02039 cytidylyltransferase_l 98.9 1.3E-08 2.7E-13 89.6 10.0 93 263-369 7-104 (143)
12 cd02169 Citrate_lyase_ligase C 98.4 5E-06 1.1E-10 84.9 15.1 167 233-442 93-281 (297)
13 smart00764 Citrate_ly_lig Citr 98.0 0.00011 2.3E-09 70.2 13.7 145 256-442 2-166 (182)
14 cd02163 PPAT Phosphopantethein 97.8 0.00042 9E-09 64.0 13.5 145 263-458 7-152 (153)
15 cd02168 NMNAT_Nudix Nicotinami 97.8 0.00028 6.2E-09 67.2 12.7 154 263-460 7-165 (181)
16 PRK00168 coaD phosphopantethei 97.8 0.0009 2E-08 62.1 15.7 147 262-462 8-158 (159)
17 TIGR01527 arch_NMN_Atrans nico 97.7 0.00065 1.4E-08 64.0 13.6 144 263-460 7-154 (165)
18 cd02165 NMNAT Nicotinamide/nic 97.7 0.00056 1.2E-08 64.9 12.3 167 263-460 7-189 (192)
19 cd02166 NMNAT_Archaea Nicotina 97.7 0.0016 3.5E-08 60.8 14.7 146 263-460 7-156 (163)
20 PLN02945 nicotinamide-nucleoti 97.6 0.0011 2.5E-08 65.3 13.8 183 257-459 22-231 (236)
21 PRK05379 bifunctional nicotina 97.6 0.0011 2.4E-08 68.7 14.0 147 263-460 14-171 (340)
22 TIGR01510 coaD_prev_kdtB pante 97.6 0.0018 3.9E-08 59.8 13.7 147 263-459 7-153 (155)
23 cd02064 FAD_synthetase_N FAD s 97.5 0.002 4.3E-08 60.8 13.8 149 258-442 2-159 (180)
24 PRK01153 nicotinamide-nucleoti 97.5 0.0018 3.8E-08 61.4 13.1 146 263-460 8-157 (174)
25 PRK13793 nicotinamide-nucleoti 97.5 0.00092 2E-08 64.8 11.2 149 264-460 13-166 (196)
26 PRK00071 nadD nicotinic acid m 97.5 0.002 4.4E-08 61.7 13.4 167 263-460 12-198 (203)
27 PRK08887 nicotinic acid mononu 97.3 0.0035 7.7E-08 59.2 12.6 150 263-460 10-167 (174)
28 TIGR00482 nicotinate (nicotina 97.3 0.0033 7.2E-08 59.9 12.4 167 263-460 5-190 (193)
29 PRK06973 nicotinic acid mononu 97.2 0.011 2.4E-07 58.9 15.3 174 263-460 30-238 (243)
30 TIGR00083 ribF riboflavin kina 97.1 0.0047 1E-07 63.1 11.2 144 263-442 6-157 (288)
31 PRK07152 nadD putative nicotin 96.9 0.0089 1.9E-07 61.9 12.2 163 263-460 9-181 (342)
32 cd09286 NMNAT_Eukarya Nicotina 96.9 0.04 8.6E-07 54.2 15.5 178 263-460 8-222 (225)
33 COG0669 CoaD Phosphopantethein 96.7 0.031 6.7E-07 52.6 12.6 147 263-460 10-157 (159)
34 TIGR00124 cit_ly_ligase [citra 96.6 0.015 3.2E-07 60.6 10.6 171 254-461 140-330 (332)
35 COG1057 NadD Nicotinic acid mo 96.5 0.039 8.4E-07 53.6 12.4 167 263-459 11-191 (197)
36 PRK05627 bifunctional riboflav 96.4 0.072 1.6E-06 54.9 14.3 152 257-442 15-174 (305)
37 PRK13964 coaD phosphopantethei 96.4 0.045 9.7E-07 50.5 11.2 131 263-442 9-140 (140)
38 COG0196 RibF FAD synthase [Coe 96.3 0.048 1E-06 56.3 12.4 152 256-443 16-175 (304)
39 PF08218 Citrate_ly_lig: Citra 96.2 0.073 1.6E-06 51.1 11.9 148 256-442 2-166 (182)
40 cd02167 NMNAT_NadR Nicotinamid 96.1 0.14 3.1E-06 47.7 13.0 84 263-357 7-94 (158)
41 cd02171 G3P_Cytidylyltransfera 94.7 0.13 2.8E-06 45.5 7.6 93 257-368 3-96 (129)
42 PRK07143 hypothetical protein; 94.5 0.36 7.7E-06 49.3 11.1 141 256-442 16-163 (279)
43 PRK13670 hypothetical protein; 94.1 0.19 4.2E-06 53.5 8.5 97 258-369 6-106 (388)
44 PRK00777 phosphopantetheine ad 93.7 1.6 3.4E-05 40.7 12.8 137 257-440 3-144 (153)
45 PRK13671 hypothetical protein; 93.3 0.48 1E-05 49.0 9.4 94 257-370 4-106 (298)
46 PRK08099 bifunctional DNA-bind 92.5 3.3 7.3E-05 44.3 14.8 55 257-320 54-120 (399)
47 PF06574 FAD_syn: FAD syntheta 92.2 0.39 8.5E-06 44.8 6.6 105 256-368 6-117 (157)
48 PLN02388 phosphopantetheine ad 91.6 1.4 2.9E-05 42.4 9.6 101 256-370 20-122 (177)
49 TIGR02199 rfaE_dom_II rfaE bif 91.6 3 6.5E-05 38.1 11.5 97 253-369 9-108 (144)
50 TIGR00125 cyt_tran_rel cytidyl 89.7 0.78 1.7E-05 35.5 5.1 55 261-320 5-62 (66)
51 COG3053 CitC Citrate lyase syn 88.8 2.1 4.6E-05 44.4 8.7 191 211-442 104-317 (352)
52 cd02170 cytidylyltransferase c 87.1 6.1 0.00013 35.2 9.8 90 257-368 3-95 (136)
53 cd02164 PPAT_CoAS phosphopante 86.6 2.8 6.1E-05 38.6 7.5 73 263-343 7-83 (143)
54 COG1323 Predicted nucleotidylt 86.4 2.7 5.9E-05 44.6 8.2 183 263-460 9-237 (358)
55 TIGR01526 nadR_NMN_Atrans nico 81.6 3.3 7.1E-05 43.0 6.3 51 263-320 9-62 (325)
56 cd02172 RfaE_N N-terminal doma 80.7 7.1 0.00015 35.8 7.5 94 256-369 5-99 (144)
57 TIGR01518 g3p_cytidyltrns glyc 79.0 3.8 8.2E-05 36.3 5.0 86 263-369 6-94 (125)
58 PF01467 CTP_transf_2: Cytidyl 78.0 4.1 8.9E-05 35.6 4.9 53 263-320 5-60 (157)
59 COG1056 NadR Nicotinamide mono 77.0 4.5 9.9E-05 38.8 5.2 59 263-331 11-74 (172)
60 TIGR00018 panC pantoate--beta- 69.5 3 6.4E-05 42.9 2.1 62 241-307 5-69 (282)
61 PF05636 HIGH_NTase1: HIGH Nuc 64.9 9.9 0.00022 40.7 5.0 181 258-460 6-234 (388)
62 cd02156 nt_trans nucleotidyl t 63.3 15 0.00032 31.3 4.9 17 263-279 7-23 (105)
63 PF12818 Tegument_dsDNA: dsDNA 62.8 93 0.002 32.1 11.4 143 215-371 120-281 (282)
64 PF14359 DUF4406: Domain of un 60.8 15 0.00033 31.5 4.5 73 218-310 1-79 (92)
65 PF02569 Pantoate_ligase: Pant 58.2 13 0.00028 38.3 4.3 67 241-311 5-73 (280)
66 cd00560 PanC Pantoate-beta-ala 53.2 8.6 0.00019 39.4 2.0 107 241-365 5-120 (277)
67 PRK00380 panC pantoate--beta-a 52.0 9.3 0.0002 39.2 2.1 61 241-306 5-68 (281)
68 PRK13477 bifunctional pantoate 51.1 15 0.00033 40.8 3.7 67 241-311 5-71 (512)
69 COG0414 PanC Panthothenate syn 49.8 26 0.00056 36.2 4.8 67 240-311 4-73 (285)
70 PRK03681 hypA hydrogenase nick 49.5 8.3 0.00018 34.3 1.1 38 398-435 62-107 (114)
71 TIGR00100 hypA hydrogenase nic 48.8 13 0.00028 33.1 2.2 38 398-435 62-106 (115)
72 PRK12380 hydrogenase nickel in 46.3 15 0.00032 32.6 2.2 38 398-435 62-106 (113)
73 PF09142 TruB_C: tRNA Pseudour 44.5 21 0.00046 27.9 2.6 33 151-183 4-45 (56)
74 cd00951 KDGDH 5-dehydro-4-deox 44.1 2.6E+02 0.0057 28.3 11.1 105 280-409 28-132 (289)
75 PLN02660 pantoate--beta-alanin 42.7 21 0.00045 36.9 2.9 59 241-305 4-66 (284)
76 PF01155 HypA: Hydrogenase exp 39.1 20 0.00044 31.7 2.0 38 398-435 62-106 (113)
77 COG0231 Efp Translation elonga 36.4 25 0.00054 32.2 2.1 67 90-179 59-125 (131)
78 PRK03620 5-dehydro-4-deoxygluc 35.1 3.9E+02 0.0085 27.3 10.8 91 280-393 35-125 (303)
79 cd08205 RuBisCO_IV_RLP Ribulos 33.4 3.6E+02 0.0078 28.7 10.5 134 221-366 93-232 (367)
80 PTZ00308 ethanolamine-phosphat 33.3 1.9E+02 0.0041 30.8 8.3 90 256-368 12-106 (353)
81 KOG3199 Nicotinamide mononucle 32.8 72 0.0016 32.0 4.7 63 257-319 10-74 (234)
82 PRK07562 ribonucleotide-diphos 32.7 72 0.0016 39.2 5.6 76 114-209 377-453 (1220)
83 PRK00762 hypA hydrogenase nick 31.7 21 0.00045 32.2 0.8 37 398-435 62-112 (124)
84 cd02785 MopB_CT_4 The MopB_CT_ 30.6 95 0.0021 27.1 4.8 36 151-186 34-71 (124)
85 PRK00564 hypA hydrogenase nick 29.9 17 0.00038 32.4 0.0 38 398-435 63-108 (117)
86 cd02789 MopB_CT_FmdC-FwdD The 29.6 90 0.0019 26.9 4.4 34 151-184 33-68 (106)
87 cd02794 MopB_CT_DmsA-EC The Mo 29.4 78 0.0017 27.5 4.0 35 151-185 32-68 (121)
88 cd00950 DHDPS Dihydrodipicolin 28.7 6E+02 0.013 25.3 10.9 77 278-365 26-103 (284)
89 cd02786 MopB_CT_3 The MopB_CT_ 28.4 83 0.0018 26.8 4.0 36 151-186 33-70 (116)
90 cd02174 CCT CTP:phosphocholine 28.0 2.6E+02 0.0057 25.9 7.5 90 257-368 4-99 (150)
91 cd02790 MopB_CT_Formate-Dh_H F 26.3 96 0.0021 26.3 4.0 35 152-186 38-74 (116)
92 cd02792 MopB_CT_Formate-Dh-Na- 25.7 1.1E+02 0.0025 26.1 4.4 36 151-186 37-74 (122)
93 cd04470 S1_EF-P_repeat_1 S1_EF 25.3 43 0.00094 26.5 1.5 24 156-179 35-58 (61)
94 PF00701 DHDPS: Dihydrodipicol 25.2 4.1E+02 0.0089 26.6 8.9 100 271-393 20-120 (289)
95 PRK13599 putative peroxiredoxi 25.1 3.2E+02 0.0069 26.7 7.8 97 145-258 91-205 (215)
96 cd02781 MopB_CT_Acetylene-hydr 24.6 1E+02 0.0023 26.8 4.0 35 151-185 35-71 (130)
97 cd00508 MopB_CT_Fdh-Nap-like T 24.6 1E+02 0.0022 26.1 3.8 35 151-185 37-73 (120)
98 cd02779 MopB_CT_Arsenite-Ox Th 24.5 1.1E+02 0.0023 26.4 4.0 36 151-186 35-72 (115)
99 cd02775 MopB_CT Molybdopterin- 24.4 1.1E+02 0.0024 25.0 3.9 33 152-184 26-60 (101)
100 COG1355 Predicted dioxygenase 23.9 1.3E+02 0.0029 31.1 5.0 44 329-373 46-91 (279)
101 cd02784 MopB_CT_PHLH The MopB_ 23.8 1E+02 0.0022 28.3 3.8 34 151-184 40-75 (137)
102 PF01568 Molydop_binding: Moly 23.8 76 0.0016 26.7 2.8 34 152-185 33-68 (110)
103 PRK04980 hypothetical protein; 23.7 89 0.0019 27.7 3.3 30 159-188 30-60 (102)
104 PF12450 vWF_A: von Willebrand 23.5 71 0.0015 28.2 2.6 34 426-462 35-68 (99)
105 cd04463 S1_EF_like S1_EF_like: 23.4 44 0.00096 25.4 1.2 23 157-179 33-55 (55)
106 cd02787 MopB_CT_ydeP The MopB_ 23.1 1.1E+02 0.0024 26.2 3.7 34 151-184 33-68 (112)
107 cd02776 MopB_CT_Nitrate-R-NarG 23.0 1.3E+02 0.0028 27.5 4.4 34 151-184 33-68 (141)
108 cd02780 MopB_CT_Tetrathionate_ 22.8 1.2E+02 0.0025 27.3 4.0 35 151-185 32-68 (143)
109 smart00359 PUA Putative RNA-bi 22.7 93 0.002 24.4 3.0 22 161-182 31-52 (77)
110 PF01472 PUA: PUA domain; Int 22.5 81 0.0018 25.5 2.7 31 148-182 22-52 (74)
111 PRK04147 N-acetylneuraminate l 22.5 7.7E+02 0.017 24.9 10.3 92 280-393 31-123 (293)
112 COG1370 Prefoldin, molecular c 22.5 82 0.0018 29.9 2.9 29 149-181 103-131 (155)
113 COG1500 Predicted exosome subu 21.5 23 0.0005 35.5 -0.9 62 150-226 20-87 (234)
114 cd02777 MopB_CT_DMSOR-like The 21.5 1.3E+02 0.0028 26.4 3.9 35 151-185 36-72 (127)
115 COG1019 Predicted nucleotidylt 20.9 75 0.0016 30.3 2.4 53 262-321 12-69 (158)
116 PRK03824 hypA hydrogenase nick 20.5 49 0.0011 30.3 1.1 19 398-416 62-80 (135)
117 cd02793 MopB_CT_DMSOR-BSOR-TMA 20.4 1.3E+02 0.0029 26.4 3.8 35 151-185 35-71 (129)
No 1
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=100.00 E-value=7.6e-131 Score=1018.84 Aligned_cols=383 Identities=32% Similarity=0.509 Sum_probs=367.7
Q ss_pred CCcCCCCccccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCee
Q 011745 64 SLIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIV 143 (478)
Q Consensus 64 ~l~~phGg~Lv~l~v~~~~~~~l~~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w 143 (478)
.++.||||+|++|+|+++++++++++|.+||+|.||+++++|||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 2 ~~~~phgg~l~~l~v~~~~~~~~~~~a~~lp~i~i~~~~l~dLell~~G~fsPL~GFM~~~d~~sV~--~~~rL~~G~~- 78 (391)
T PRK04149 2 MLIPPHGGELVNRVVEGRDREEILEEAESLPRIELDERAASDLEMIAIGGFSPLTGFMGREDYDSVV--EEMRLANGLV- 78 (391)
T ss_pred CCCCCCCCcchhccCCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCcccCCCHHHHHHHH--HhCcCCCCCC-
Confidence 4568999999999999999999999999999999999999999999999999999999999999999 7999999998
Q ss_pred ccceeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeee
Q 011745 144 NMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGD 223 (478)
Q Consensus 144 ~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~ 223 (478)
|||||||+|++|++++|++|++|+|+ ++|+++|+|+|+|+|++||+++|++||||+|++||||++++ +.|+|+|||+
T Consensus 79 -wpiPi~L~v~~e~~~~l~~g~~vaL~-~~G~~va~l~V~evf~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~ 155 (391)
T PRK04149 79 -WSIPITLDVSEEDAASLKEGDEVALV-YKGEPYGVLEVEEIYTYDKKKEAEKVYKTTDEKHPGVKKLY-EQGDVYLAGP 155 (391)
T ss_pred -cceeEEEeCCHHHHhhCCCCCEEEEe-eCCEEEEEEEeeeEecCChHHHHHHHhCCCCcCCchHHHHH-hcCCEEEEeE
Confidence 79999999999999999999999999 79999999999999999999999999999999999999987 5799999999
Q ss_pred EEEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC
Q 011745 224 LEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA 303 (478)
Q Consensus 224 v~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~ 303 (478)
|++++++.+ ++|++||+||+|+|+.|+++||++|||||||||+|||||+|+|+| +|.+ +++||||++|++|+
T Consensus 156 i~~l~~~~~-~~f~~~r~tP~e~r~~f~~~gw~~VvafqTrnP~HraHe~l~~~a----~e~~---d~lll~plvG~~k~ 227 (391)
T PRK04149 156 VTLLNRKFH-EPFPRFWLTPAETRELFEEKGWKTVVAFQTRNPPHRAHEYLQKCA----LEIV---DGLLLNPLVGETKS 227 (391)
T ss_pred EEEeecCCC-CCchhhcCCHHHHHHHHHHcCCCeEEEeecCCCCchHHHHHHHHH----HHhc---CeEEEecCcCCCCC
Confidence 999998875 479999999999999999999999999999999999999999866 4553 79999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCc
Q 011745 304 DDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPD 383 (478)
Q Consensus 304 ~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~ 383 (478)
||+|+++|||||+++++ ||||+++++|++||++|||||||||+||||+||||||||||||||||||| +|||+|
T Consensus 228 ~di~~~~r~~~~~~~~~-~y~p~~~v~l~~lp~~mryAGPrEa~lhAivrkN~GcTh~IvGrDHAG~g------~~Y~~~ 300 (391)
T PRK04149 228 GDIPAEVRMEAYEALLK-NYYPKDRVLLSVTPAAMRYAGPREAIFHAIVRKNYGCTHFIVGRDHAGVG------DYYGPY 300 (391)
T ss_pred CCCCHHHHHHHHHHHHH-hcCCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCcc------ccCCCc
Confidence 99999999999999996 69999999999999999999999999999999999999999999999999 699999
Q ss_pred hhhHHHHhh-cCCCcceeeEeeeEEEecccCceee--cCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 384 HGKKVLSMA-LGLEKLNILPFRVAAYDTVEKKMAF--FDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 384 ~aq~i~~~~-~~~~~i~i~~f~~~~Y~~~~~~~~~--~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
+||+||+++ +++.+|+|++|++++||++|++|++ .|||+++++++||||+||+||++|+.||+|||||||+++|+++
T Consensus 301 ~aq~i~~~~~~~~l~I~~v~~~~~~Yc~~c~~~~~~~~cphg~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~iL~~~ 380 (391)
T PRK04149 301 DAQEIFDEFTEEELGITPLKFEEAFYCPKCGGMASEKTCPHGKEDRVHLSGTKVREMLREGEKPPPEFSRPEVAEVLIKG 380 (391)
T ss_pred hHHHHHHhCCcccCCceEEecceeEEecCCCeEEEcccCCCCCCceEeeCHHHHHHHHHCcCCCCCccCcHHHHHHHHHH
Confidence 999999998 5788999999999999999999999 5999998999999999999999999999999999999999999
Q ss_pred hhhhhhh
Q 011745 461 YESLQAE 467 (478)
Q Consensus 461 ~~~~~~~ 467 (478)
|+++...
T Consensus 381 ~~~~~~~ 387 (391)
T PRK04149 381 LKKYGYP 387 (391)
T ss_pred hhhcCCC
Confidence 9986544
No 2
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-129 Score=984.87 Aligned_cols=379 Identities=31% Similarity=0.513 Sum_probs=362.4
Q ss_pred CcCCCCccccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCeec
Q 011745 65 LIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVN 144 (478)
Q Consensus 65 l~~phGg~Lv~l~v~~~~~~~l~~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w~ 144 (478)
+..||||+||+|++.+.+ ..+.+..+|+|+|+.+.++||++|++|+||||+||||++||+||+ ++|||+||++
T Consensus 3 ~~~phgg~Lv~r~~~~~~---~~~~~~~~~~ield~~~~~dl~lIa~G~fSPl~GFMne~dy~sVv--~~mRL~~G~~-- 75 (397)
T COG2046 3 LSPPHGGKLVRRVAEERD---AMKSIRKLPRIELDQNSFGDLELIAYGAFSPLTGFMNEKDYESVV--ESMRLANGTL-- 75 (397)
T ss_pred CCCCCcchhhhhhccccc---hHHHhccCceEEEchhhHHHHHHHHccCCCcccccccHHHHHHHH--HhccccCCCe--
Confidence 468999999999998866 667889999999999999999999999999999999999999999 8999999999
Q ss_pred cceeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeE
Q 011745 145 MSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDL 224 (478)
Q Consensus 145 wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v 224 (478)
||+||||+|+++.|..+++||+|.|.. .|.++|+|+|+|+|.+||+.+|.+||+|+|++||||+.++ .+|+++|||+|
T Consensus 76 w~iPItl~v~e~~a~~~~~Gd~i~L~~-~g~piavl~veevy~~dk~~eA~~v~~t~D~~HPgv~~l~-~~g~~~laG~i 153 (397)
T COG2046 76 WPIPITLDVSEEEAEELSVGDRILLTY-KGDPIAVLTVEEVYKPDKKLEAKNVFKTSDIKHPGVKKLY-DMGDYYLAGKI 153 (397)
T ss_pred eeeeeEecCchHhhhccCCCCEEEEcc-CCceEEEEEeeeecccCHHHHHHHhcCCCCCCCCceeeee-ccCCeEeeeeE
Confidence 799999999999999999999999985 9999999999999999999999999999999999999987 69999999999
Q ss_pred EEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCC
Q 011745 225 EVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKAD 304 (478)
Q Consensus 225 ~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~ 304 (478)
++++.|.++ +|++|++||+|+|+.|++|||++|||||||||+|||||||||+| ++.. ++|||||+||+||+|
T Consensus 154 ~l~~~p~~~-~~~~~~~~P~~~R~~f~~kgwk~vvafQTRNp~HraHEyl~K~A----l~~v---dgllv~plVG~tk~g 225 (397)
T COG2046 154 ELINEPIFK-PFPKYWLTPAETREVFKEKGWKTVVAFQTRNPPHRAHEYLQKRA----LEKV---DGLLVHPLVGATKPG 225 (397)
T ss_pred EEEecCCCC-CchhhccCHHHHHHHHHhcCCeEEEEEecCCCchHHHHHHHHHH----HHhc---CcEEEEeeeccccCC
Confidence 999988876 89999999999999999999999999999999999999999865 4543 789999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCch
Q 011745 305 DVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDH 384 (478)
Q Consensus 305 Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~ 384 (478)
|+++++||+||+++++ +|||+++++|+++|++|||||||||+|||||||||||||||||||||||| +|||+|+
T Consensus 226 D~~~e~rm~~ye~l~~-~Yyp~dr~~Ls~~~~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG------~yYg~Y~ 298 (397)
T COG2046 226 DIPDEVRMEYYEALLK-HYYPPDRVFLSVLPAAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVG------DYYGPYD 298 (397)
T ss_pred CchHHHHHHHHHHHHH-hCCCCCcEEEEecHHHhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCCcc------ccCCccc
Confidence 9999999999999995 89999999999999999999999999999999999999999999999999 7999999
Q ss_pred hhHHHHhhcCCCcceeeEeeeEEEecccCceeec--CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHhh
Q 011745 385 GKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF--DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYYE 462 (478)
Q Consensus 385 aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~--~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~~ 462 (478)
||+||+.|+.+.||++++|+++|||++|++|++. |||+.++++.||||++|+||++|..||+|||||||+++|+++++
T Consensus 299 aq~if~~f~~eLgI~p~~f~e~~YC~~c~~~~~~~~cph~~~~~~~~SGt~lR~~Lr~G~~PP~~f~RPEV~~vl~k~~~ 378 (397)
T COG2046 299 AQEIFDEFSPELGITPVFFEEFFYCPKCGQMVSTKTCPHGDEHHLHISGTKLREMLRAGVKPPEEFSRPEVADVLRKSLF 378 (397)
T ss_pred HHHHHHhcccccCcEEEeccceeecccccCCcccccCCCCCcceEEEccHHHHHHHHcCCCCCcccccHHHHHHHHHhcc
Confidence 9999999976789999999999999999999996 99999999999999999999999999999999999999999998
Q ss_pred hhhhh
Q 011745 463 SLQAE 467 (478)
Q Consensus 463 ~~~~~ 467 (478)
....+
T Consensus 379 ~~~~~ 383 (397)
T COG2046 379 PYRLK 383 (397)
T ss_pred ccccc
Confidence 77543
No 3
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=100.00 E-value=9.7e-126 Score=1022.76 Aligned_cols=390 Identities=30% Similarity=0.485 Sum_probs=373.4
Q ss_pred CcCCCCccccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCeec
Q 011745 65 LIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVN 144 (478)
Q Consensus 65 l~~phGg~Lv~l~v~~~~~~~l~~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w~ 144 (478)
+|+||||+|+||+|+++++++++++|.+||+|.||+++++|||||++|+||||+|||+++||+||+ ++|||+||++
T Consensus 1 ~~~p~gg~l~~~~~~~~~~~~~~~~a~~lp~i~i~~~~~~dlell~~G~~sPL~GfM~~~d~~~V~--~~~~l~~G~~-- 76 (568)
T PRK05537 1 LILPNGGPLPNLYVSPESREKLKAEALSLPSLDLSPRQICDLELLMNGGFSPLKGFMGRADYECVL--ENMRLADGTL-- 76 (568)
T ss_pred CCCCCCCcchhcccCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--
Confidence 479999999999999999999999999999999999999999999999999999999999999999 7999999998
Q ss_pred cceeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeE
Q 011745 145 MSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDL 224 (478)
Q Consensus 145 wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v 224 (478)
|||||||+|+++.+++|++|++|+|+|++|+++|+|+|+|+|++||++||++||||+|++||||++++.+.|+|+|||+|
T Consensus 77 wpiPi~L~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~dk~~~~~~vfgt~d~~HPgv~~~~~~~g~~~v~G~v 156 (568)
T PRK05537 77 WPIPITLDVSEKFAAGLEIGERIALRDQEGVLLAILTVSDIWEPDKEREAEAVFGTTDPAHPGVNYLHRWAGKFYLGGPL 156 (568)
T ss_pred cceeEEEeCCHHHHhhCCCCCEEEEECCCCcEEEEEEeeeEecCCHHHHHHHHhCCCCcCCccHHHHHhhcCCEEEEeeE
Confidence 79999999999999999999999999989999999999999999999999999999999999999998655999999999
Q ss_pred EEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCC
Q 011745 225 EVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKAD 304 (478)
Q Consensus 225 ~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~ 304 (478)
+++++|.|+ +|++||+||+|+|+.|+++||++|||||||||+|||||+|||+|++. . ++++||||+||++|+|
T Consensus 157 ~~~~~~~~~-~f~~~r~tp~e~r~~f~~~gw~~v~afqtrnP~Hr~He~l~~~a~~~---~---d~~lll~p~~G~~k~~ 229 (568)
T PRK05537 157 TGIQLPVHY-DFVQLRLTPAELRARFRKLGWRRVVAFQTRNPLHRAHEELTKRAARE---V---GANLLIHPVVGMTKPG 229 (568)
T ss_pred EEEecCCCC-CchhhcCCHHHHHHHHHHcCCCcEEEEecCCCCcHHHHHHHHHHHHh---c---CCeEEEecCCCCCCCC
Confidence 999988886 69999999999999999999999999999999999999999887542 2 2589999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCch
Q 011745 305 DVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDH 384 (478)
Q Consensus 305 Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~ 384 (478)
|+|+++|||||+++++ + ||+++++|++||++|||||||||+||||+|||||||||||||||||||+++++.+|||+|+
T Consensus 230 d~~~~~r~~~~~~~~~-~-~p~~~~~l~~~p~~mryaGpreai~hAi~r~N~Gcth~ivGrdhAg~~~~~~~g~~Y~~~~ 307 (568)
T PRK05537 230 DIDHFTRVRCYEALLD-K-YPPATTLLSLLPLAMRMAGPREALWHAIIRRNYGCTHFIVGRDHAGPGKDSRGKPFYGPYD 307 (568)
T ss_pred CCCHHHHHHHHHHHHH-h-CCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCCCcCcccCCchH
Confidence 9999999999999996 5 9999999999999999999999999999999999999999999999999888899999999
Q ss_pred hhHHHHhhcCCCcceeeEeeeEEEecccCceeec--CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHhh
Q 011745 385 GKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF--DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYYE 462 (478)
Q Consensus 385 aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~--~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~~ 462 (478)
||+||++++++.+|+|++|+++|||++|++|++. |||+. ++++||||+||+||++|+.||+|||||||++||+++|+
T Consensus 308 a~~i~~~~~~~l~i~~~~~~~~~Y~~~~~~~~~~~~cph~~-~~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~ 386 (568)
T PRK05537 308 AQELFAKYADEIGITMVPFKEMVYVQDKAQYVPVDEVPQGA-TVLTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYP 386 (568)
T ss_pred HHHHHHhCccccCceEEecceeEEEcCCCeEEecCcCCCCc-ceeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhc
Confidence 9999999988899999999999999999999996 99977 69999999999999999999999999999999999999
Q ss_pred hhhhhc
Q 011745 463 SLQAEE 468 (478)
Q Consensus 463 ~~~~~~ 468 (478)
+..+.+
T Consensus 387 ~r~~~g 392 (568)
T PRK05537 387 PRHKQG 392 (568)
T ss_pred cccCCC
Confidence 765543
No 4
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=100.00 E-value=4.5e-122 Score=943.55 Aligned_cols=351 Identities=44% Similarity=0.709 Sum_probs=334.6
Q ss_pred CCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCeeccceeeEeccCHHHHhhcCCCCeEEEeCC
Q 011745 93 MPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGP 172 (478)
Q Consensus 93 lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w~wpiPItL~V~~e~a~~l~~G~~vaL~d~ 172 (478)
||+|.||+++++|||||++|+||||+||||++||+||+ ++|||+||++ |||||||+|++|++++|++|++|+|+|
T Consensus 1 lp~i~i~~~~~~dlell~~G~fsPL~GFM~~~d~~~V~--~~~rL~~G~~--wpiPi~L~v~~e~~~~l~~g~~v~L~~- 75 (353)
T cd00517 1 LPSVELSERDLCDLEMLAEGGFSPLTGFMTEADYLSVL--EEMRLLDGTL--WPIPIVLDVSEEDAKRLKEGERVALRY- 75 (353)
T ss_pred CCeEEcCHHHHHHHHHHhcCCccCCccCCCHHHHHHHH--HhCcCCCCCC--cCeEEEEeCCHHHHhhcCCCCEEEEeE-
Confidence 79999999999999999999999999999999999999 7999999988 799999999999999999999999997
Q ss_pred CCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHHHh
Q 011745 173 TGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDN 252 (478)
Q Consensus 173 eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~d~f~~~r~tP~E~R~~f~~ 252 (478)
+|+++|+|+|+|+|++||++||++||||+|++||||++++ +.|+|+|||+|++++++.++ +|++||+||+|+|+.|++
T Consensus 76 ~g~~~a~l~v~e~~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~v~~l~~~~~~-~f~~~r~tP~e~R~~f~~ 153 (353)
T cd00517 76 PGQPLAILTVEEIYEPDKEEEAARVFGTTDPHHPGVKKVM-EQGDWLVGGPIEVLELPPFP-DFDQYRLTPAELRALFKE 153 (353)
T ss_pred CCEEEEEEEeeeEecCCHHHHHHHHhCCCCCCChhHHHHH-hcCCEEEeeEEEEeecCCcC-CchhhcCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999987 57999999999999988887 799999999999999999
Q ss_pred cCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 011745 253 RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (478)
Q Consensus 253 ~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ 332 (478)
+||++|||||||||+|||||+|+|+|++.+ + +++|||||++|+||+||+|+++|||||+++++ +|+|+++++|+
T Consensus 154 ~gw~~VvafqtrnP~HraHe~l~~~a~~~~---~--~~~lll~plvG~~k~~d~~~~~r~~~~~~l~~-~y~~~~~~~l~ 227 (353)
T cd00517 154 RGWRRVVAFQTRNPMHRAHEELMKRAAEKL---L--NDGLLLHPLVGWTKPGDVPDEVRMRAYEALLE-EYYLPERTVLA 227 (353)
T ss_pred cCCCeEEEeecCCCCchhhHHHHHHHHHHc---C--CCcEEEEeccCCCCCCCCCHHHHHHHHHHHHH-hCCCCCcEEEE
Confidence 999999999999999999999998876532 1 37899999999999999999999999999996 79999999999
Q ss_pred ecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEeccc
Q 011745 333 IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVE 412 (478)
Q Consensus 333 ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~ 412 (478)
+||++|||||||||+||||+|||||||||||||||||+|++ .+|||+|+||+||+.++++.+|++++|++++||++|
T Consensus 228 ~lp~~mryAGPrEallhAiirkN~GcThfIvGrDHAG~g~~---~~yY~~y~aq~i~~~~~~~l~I~~v~~~~~~Yc~~c 304 (353)
T cd00517 228 ILPLPMRYAGPREALWHAIIRKNYGATHFIVGRDHAGVGHP---GDYYGPYDAQEIFKKLAPELGIEPVPFREAAYCPKC 304 (353)
T ss_pred eccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCc---cccCCcchhHHHHHhCcccCCceEEecceeEEecCC
Confidence 99999999999999999999999999999999999999965 689999999999999977689999999999999999
Q ss_pred Cceeec--CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 413 KKMAFF--DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 413 ~~~~~~--~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
++|++. |||+ +++++||||+||+||++|+.||+|||||||+++|++|
T Consensus 305 ~~~~~~~~cp~~-~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~~L~~~ 353 (353)
T cd00517 305 DGMASEDTCPHG-EDFLNISGTKLRKMLREGEKPPEWFMRPEVAKVLREY 353 (353)
T ss_pred CeEEecccCCCC-CceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhhC
Confidence 999996 8854 4699999999999999999999999999999999985
No 5
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=100.00 E-value=4.7e-121 Score=944.93 Aligned_cols=380 Identities=37% Similarity=0.598 Sum_probs=365.3
Q ss_pred CCCccccccccCch-hhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCeeccc
Q 011745 68 PDGGVLVDLVVPES-ERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMS 146 (478)
Q Consensus 68 phGg~Lv~l~v~~~-~~~~l~~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w~wp 146 (478)
||||+|++|+|+++ ++++++++|.+||+|.||+++++|||||++|+||||+||||++||+||+ ++|||+||++ ||
T Consensus 1 phgg~l~~l~v~~~~~~~~l~~~a~~lp~i~i~~~~l~dlell~~G~fsPL~GfM~~~d~~~V~--~~~rL~~G~~--wp 76 (383)
T TIGR00339 1 PHGGKLVELIVRDPDIEHKLLAEAESLPSITLSDRQLCDLELLGNGAFSPLEGFMNEADYDSVV--EDMRLSDGVL--FS 76 (383)
T ss_pred CCCCcchhcccCchHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--cc
Confidence 89999999999998 6779999999999999999999999999999999999999999999999 7999999998 79
Q ss_pred eeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEE
Q 011745 147 LPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEV 226 (478)
Q Consensus 147 iPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~ 226 (478)
|||||+|+++++++|++|++|+|+|++|+++|+|+|+|+|++||+++|++||||+|++||||++++ +.|+|+|||+|++
T Consensus 77 iPi~L~v~~e~~~~l~~g~~v~L~~~eg~~~a~l~v~ev~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~v~G~i~~ 155 (383)
T TIGR00339 77 VPITLDIDDEDADDIKLGDRILLTDDKGQPLAILTIEEVYKPNKTKEAKKVFGTTDPEHPGVVYLN-SAGNYYIGGPIEV 155 (383)
T ss_pred eeEEEeCCHHHHhhCCCCCeEEEECCCCCEEEEEEeeeeecCCHHHHHHHHhCCCCcCCccHHHHH-hcCCEEEEeEEEE
Confidence 999999999999999999999999977999999999999999999999999999999999999987 7999999999999
Q ss_pred ecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCC
Q 011745 227 LKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDV 306 (478)
Q Consensus 227 l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di 306 (478)
+++|.|+ +|++||+||+|+|+.|+++||++|||||||||+||||++|++.|++.+ + .+++||+|++|++|+||+
T Consensus 156 l~~~~~~-~f~~~r~tP~e~r~~f~~~gw~~Vvafqt~nPiHr~H~~l~~~a~e~l---~--~d~lll~P~~g~~k~~~~ 229 (383)
T TIGR00339 156 INLPKFY-DFPRFRFTPAELREEFKERGWDTVVAFQTRNPMHRAHEELTKRAARSL---P--NAGVLVHPLVGLTKPGDI 229 (383)
T ss_pred eecCCCC-CchhhcCCHHHHHHHHHHcCCCeEEEeccCCCCchHHHHHHHHHHHHc---C--CCeEEEEeCCCCCCCCCC
Confidence 9988885 699999999999999999999999999999999999999998775522 2 478999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhh
Q 011745 307 PLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGK 386 (478)
Q Consensus 307 ~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq 386 (478)
++++|++||+++++ ||+++++++++++|++||||||||++||||+|||||||||||||||||+|+++++++||++|+||
T Consensus 230 ~~~~R~~~~~~~~~-~~~~~~~~~l~~~~~em~~agpreall~Aiir~nyG~th~IiG~Dhag~g~~~~~~~~Y~~~~aq 308 (383)
T TIGR00339 230 PAEVRMRAYEVLKE-GYPNPERVMLTFLPLAMRYAGPREAIWHAIIRKNYGATHFIVGRDHAGPGSNSKGQDFYGPYDAQ 308 (383)
T ss_pred CHHHHHHHHHHHHh-hCCCCCceEEEecchHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCccccCCCcchHH
Confidence 99999999999985 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcceeeEeeeEEEecccCceeec--CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHH
Q 011745 387 KVLSMALGLEKLNILPFRVAAYDTVEKKMAFF--DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQ 459 (478)
Q Consensus 387 ~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~--~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~ 459 (478)
+||++++++.+|+|++|++++||++|++|++. |||+++++++||||+||+||++|+.||+|||||||++||++
T Consensus 309 ~i~~~~~~~l~I~~v~~~~~~Yc~~c~~~~~~~~cph~~~~~~~~sgt~ir~~L~~G~~pP~~f~rpeV~~~L~~ 383 (383)
T TIGR00339 309 ELFEKYKAELGIKIVPFEHVAYCPDEDEYAPADQAGHTNLRTLNISGTKLRGMLREGVFPPEWFSRPEVVKILRE 383 (383)
T ss_pred HHHHhCccccCceEEecceeEEEcccCcEeecccCCCCccceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhC
Confidence 99999988899999999999999999999996 99998899999999999999999999999999999999974
No 6
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.4e-91 Score=701.88 Aligned_cols=391 Identities=62% Similarity=1.112 Sum_probs=380.0
Q ss_pred cccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCC-----Ceeccc
Q 011745 72 VLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDG-----SIVNMS 146 (478)
Q Consensus 72 ~Lv~l~v~~~~~~~l~~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG-----~~w~wp 146 (478)
...+++|+++....++++|++||++.|++.|++|++.|++||..||+|||+|.+|.+++||+++ -|| -..++|
T Consensus 231 ~v~elfv~e~~l~~~~~eae~lp~l~itkvdlqwvqvlaegwatpl~gfmrereylq~mhf~~l--ld~khaf~g~in~s 308 (627)
T KOG4238|consen 231 DVHELFVPENKLDHVRAEAETLPSLSITKVDLQWVQVLAEGWATPLKGFMREREYLQVMHFDTL--LDGKHAFDGVINMS 308 (627)
T ss_pred HHHHHcCCccHHHHHHhhhccCCcceeeehhHHHHHHHHhhccccchhHHHHHHHHHHhhhhhh--hccccccccccccc
Confidence 4788999999999999999999999999999999999999999999999999999999998654 565 445799
Q ss_pred eeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEE
Q 011745 147 LPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEV 226 (478)
Q Consensus 147 iPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~ 226 (478)
|||+|+++.|++++|..-.+++|. ++|+.+|+|.-.|+|++.|+++|.+.|||++++||.|++++ ++|+|+|||++.+
T Consensus 309 ipivl~~s~e~k~~leg~t~~al~-y~g~~~ail~dpe~fehrkeer~~rq~gt~~~~hp~i~~vm-esg~wl~ggdl~v 386 (627)
T KOG4238|consen 309 IPIVLPVSAEDKTRLEGCTKFALA-YGGRRVAILRDPEFFEHRKEERCSRQWGTTCTKHPHIKMVM-ESGDWLVGGDLQV 386 (627)
T ss_pred ccEEEecchhhhhccchhHHHHhh-cCCEEEEEecChHHhhhhhHHHHHHHhCCCCCCChHHHHHH-hcCCeeeccchhh
Confidence 999999999999999999999998 79999999999999999999999999999999999999987 6999999999999
Q ss_pred ecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCC
Q 011745 227 LKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDV 306 (478)
Q Consensus 227 l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di 306 (478)
++.+.|+|++++||+||.|+|+.|++++.++|+|||.|||+|+||..||++|.+.++|.|+++++|||||++||||.||+
T Consensus 387 l~ki~~ndgldqyr~tp~elk~~f~e~nadavfafqlrnpvhnghallm~dt~~~ll~~g~k~pvlllhplggwtkdddv 466 (627)
T KOG4238|consen 387 LEKIRWNDGLDQYRLTPLELKQKFKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDV 466 (627)
T ss_pred heeeeeccchhhhcCCHHHHHHHHHhhCcceEEEeeecCccccchhhHhHhHHHHHHHhcccCceEEEecCCCCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhh
Q 011745 307 PLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGK 386 (478)
Q Consensus 307 ~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq 386 (478)
|.+.||+++.++++++.+.|+.++++|||++|.||||.|..|||..|.-.|++|+|||||+||+.+|..++|.|.|.++.
T Consensus 467 pl~~rmkqh~avl~e~vldpe~tvvaifpspmmyagptevqwh~rsrm~ag~~~yivgrdpagm~~pe~~~dlye~thga 546 (627)
T KOG4238|consen 467 PLDWRMKQHAAVLEEGVLDPESTVVAIFPSPMMYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGA 546 (627)
T ss_pred cchhhhHHHHHHHHhccCCccceEEEEcCCchhcCCchhhhhhHHHHhhccCeeEEeccCcCCCCCCCCCccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcceeeEeeeEEEecccCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHhhhhhh
Q 011745 387 KVLSMALGLEKLNILPFRVAAYDTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYYESLQA 466 (478)
Q Consensus 387 ~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~~~~~~ 466 (478)
+++++.||+..++|+||+.++|.++...|.+.++..++++.+||||+||++.|+|+.||+.||.|..|++|.+||+++++
T Consensus 547 kvlsmapgl~~l~i~pfrvaay~k~~k~m~f~d~~~~edfe~isgtrmr~lar~g~~ppegfmap~aw~vlt~yyksle~ 626 (627)
T KOG4238|consen 547 KVLSMAPGLTSLEIIPFRVAAYNKAKKAMDFYDPARHEDFEFISGTRMRKLAREGENPPEGFMAPKAWKVLTDYYKSLEK 626 (627)
T ss_pred eeeeecCCcceeeeeeeehhhhhhhhhhccccChhhhcccccccchhHHHHHhcCCCCCccccCchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
No 7
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=100.00 E-value=9.5e-83 Score=614.39 Aligned_cols=213 Identities=36% Similarity=0.621 Sum_probs=180.9
Q ss_pred cCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHH
Q 011745 236 LDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQH 315 (478)
Q Consensus 236 f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y 315 (478)
|++||+||+|+|+.|+++||++|||||||||+|||||+|+|.|++.+ + ++|||||+||++|+||+|+++|++||
T Consensus 1 f~~~r~tP~e~r~~~~~~gw~~VvafqtrnPlHraHe~l~~~a~e~~---~---~~lll~plvG~~k~~d~~~~~r~~~~ 74 (215)
T PF01747_consen 1 FRRYRLTPAETRELFKEKGWRRVVAFQTRNPLHRAHEYLMRRALEKA---G---DGLLLHPLVGPTKPGDIPYEVRVRCY 74 (215)
T ss_dssp TCCTB--HHHHHHHHHHTT-SSEEEEEESS---HHHHHHHHHHHHHH---T---SEEEEEEBESB-STTSCCHHHHHHHH
T ss_pred CcchhCCHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHh---c---CcEEEEeccCCCCcCCCCHHHHHHHH
Confidence 78999999999999999999999999999999999999999876533 2 79999999999999999999999999
Q ss_pred HHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCC
Q 011745 316 SKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGL 395 (478)
Q Consensus 316 ~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~ 395 (478)
+++++ +|||+++++|+++|++|||||||||+||||||||||||||||||||||+| +|||+|+||+||++++++
T Consensus 75 ~~~~~-~y~p~~~v~l~~lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdhAg~g------~~Y~~~~a~~i~~~~~~e 147 (215)
T PF01747_consen 75 EALID-NYFPKNRVLLSPLPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVG------DFYDPYEAQEIFDEYAGE 147 (215)
T ss_dssp HHHHH-HCSSTTGEEEEBBESB---SHHHHHHHHHHHHHHTT-SEEEE-TTTT-SC------BSS-TTHHHHHHHHHHHH
T ss_pred HHHHH-HhCCCCcEEEeccCchhcccCcHHHHHHHHHHHHCCCceEEeCCcCCCcc------ccCCccHHHHHHHcCccc
Confidence 99996 59999999999999999999999999999999999999999999999999 899999999999998888
Q ss_pred CcceeeEeeeEEEecccCceeec--CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHh
Q 011745 396 EKLNILPFRVAAYDTVEKKMAFF--DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYY 461 (478)
Q Consensus 396 ~~i~i~~f~~~~Y~~~~~~~~~~--~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~ 461 (478)
.||++++|++++||++|++|++. |||+.+++++||||+||+||++|+.||+|||||||+++|++||
T Consensus 148 l~I~~v~~~~~~Yc~~~~~~~~~~~cp~~~~~~~~iSgt~ir~~L~~G~~pP~~f~rpeV~~~L~~~Y 215 (215)
T PF01747_consen 148 LGIEPVPFPEMVYCPKCGQYVSAKTCPHGKHHHISISGTEIRELLREGEEPPEWFMRPEVAAILRRYY 215 (215)
T ss_dssp CTSEEEE---EEEETTTTEEEECGGSSTTTGGGEE--HHHHHHHHHTT----TTTS-HHHHHHHHHHC
T ss_pred CCceEEecceEEEEcCCCeEeeccccCCCCCcceeeCHHHHHHHHHCcCCCCCCcCcHHHHHHHHHhC
Confidence 99999999999999999999985 9999888899999999999999999999999999999999997
No 8
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-66 Score=519.16 Aligned_cols=405 Identities=50% Similarity=0.733 Sum_probs=389.7
Q ss_pred cccccCCcCCCCccccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecC
Q 011745 59 SAIKSSLIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMK 138 (478)
Q Consensus 59 ~~~~~~l~~phGg~Lv~l~v~~~~~~~l~~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~ 138 (478)
++..+++|.|.||+|++++|++-++...+++++++|.|.|+..|++|...+.+||.|||.|||.+.++.+.+||+..||.
T Consensus 43 lsv~s~li~Pdgg~l~el~v~e~k~~~kkae~~d~p~i~l~~vdl~w~hv~segwasplrGfmre~e~lqtlhfn~~~l~ 122 (466)
T KOG0636|consen 43 LSVKSGLIIPDGGKLVELFVNEIKRRVKKAEAEDDPRIKLNTVDLEWVHVLSEGWASPLRGFMRESEFLQTLHFNSLRLV 122 (466)
T ss_pred eeccceeeccCCchHHHhhccccchhhhhhhhccCCceeeeeeeeEEeeecchhhhccccCcccchhHHhheeccceeec
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeccceeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHH-HHHHHhhCCCCCCCcchhhhcccCCc
Q 011745 139 DGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKE-ERIARTWGTTAAGLPYVEEVITPAGN 217 (478)
Q Consensus 139 dG~~w~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~-~ea~~vfGT~d~~HPgV~~~~~~~g~ 217 (478)
||++.++++||+|+++++.+..++...+|.|++.+|.++|++...++|.+.|+ ++|++.|||+-+-||.|.......++
T Consensus 123 ~GS~vnmslPivlaidd~~K~~ig~s~~v~l~~~d~~~i~~lrn~~~~aH~e~t~R~Art~gatv~~~P~V~~t~~~~~d 202 (466)
T KOG0636|consen 123 DGSVVNMSLPIVLAIDDDQKTPIGLSLEVQLVQSDGNPIAILRNPMHRAHRELTVRAARTWGATVLIHPVVGETKPGDID 202 (466)
T ss_pred CceEEEeeccEEEecCcccccccccceeEEEecCCCCeeeeecCHHhhhchHHHHHHHHHhCCccccccccceecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999998778999
Q ss_pred EEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccc
Q 011745 218 WLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL 297 (478)
Q Consensus 218 ~~vgG~v~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Pl 297 (478)
|+++|+++++.+.+|+|+.+.+++.|.++|.++.+++...+++||.|||.|.+|-.++..+.+..++.+|+++.+++||+
T Consensus 203 ~l~~~~v~v~~~~rY~dGl~~~~L~P~amR~e~~r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v 282 (466)
T KOG0636|consen 203 HLTRVRVYVLIPIRYPDGLARLSLLPLAMRMEGDREAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLV 282 (466)
T ss_pred ceeeeEEEEEEeeecCCchhhhcCChHHHhhhcchhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC-hhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCC
Q 011745 298 GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEK 376 (478)
Q Consensus 298 vG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAG-PREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~ 376 (478)
.|.||.+|||-..||++++..+++ .|.|.+++.+++|.+|.|+| |.|..||+-.|-|-|++..|||||.+|.|+|..+
T Consensus 283 ~gytke~dipl~~~m~q~~~~~ED-v~dP~~tv~si~~~~l~~sGt~~~~r~~v~arI~e~~sy~~V~r~~~~~g~P~~k 361 (466)
T KOG0636|consen 283 EGYTKEDDIPLVPFMMQTYLPDED-VYDPEDTVVSIFTRTLNISGTELRRRLRVGARIPEWFSYPEVVRILRGSGPPTEK 361 (466)
T ss_pred hhcccccCCcccHHHhhhccchhh-hcCccceeeeccccceeecCCcceeeeeeccccCcccccceeeechhhcCCCccc
Confidence 999999999999999999988877 77777789999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCCchh--hHHHHhhcCCCcceeeEeeeEEEecccCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHH
Q 011745 377 RDLYDPDHG--KKVLSMALGLEKLNILPFRVAAYDTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGW 454 (478)
Q Consensus 377 ~~~Y~~~~a--q~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~ 454 (478)
++||++.+. .+.+.+.+++.-+++.+|+.+.|.+..++|+.++ ..+++++||||+||.... ++++|+.||+|.+|
T Consensus 362 q~~~~a~~g~~k~vLsmAp~le~Lni~~~R~aa~~~~~~kmaffd--~aQdfl~i~gtkm~~~a~-~edp~dg~~~p~~w 438 (466)
T KOG0636|consen 362 QGFYDADHGATKKVLSMAPLLERLNILGFRVAAYDKTQGKMAFFD--RAQDFLFIGGTKMRSLAK-LEDPDDGVMCPSGW 438 (466)
T ss_pred CCceecCCccchheeccchhhHHhccCCeeEEEEeccCChhhHHH--HHHHHhhccceeEeechh-ccCCCcccccCcce
Confidence 999999987 8899999998889999999999999999999988 678999999999999777 99999999999999
Q ss_pred HHHHHHhhhhhhh
Q 011745 455 KVLVQYYESLQAE 467 (478)
Q Consensus 455 ~iL~~~~~~~~~~ 467 (478)
++|.+||.+++.+
T Consensus 439 ~vlv~~~~dl~~e 451 (466)
T KOG0636|consen 439 KVLVDYYKDLQSE 451 (466)
T ss_pred EEEecchhhhhhh
Confidence 9999999999744
No 9
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=100.00 E-value=2.9e-53 Score=393.10 Aligned_cols=159 Identities=40% Similarity=0.693 Sum_probs=139.7
Q ss_pred cCCCCc-cccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCeec
Q 011745 66 IEPDGG-VLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVN 144 (478)
Q Consensus 66 ~~phGg-~Lv~l~v~~~~~~~l~~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w~ 144 (478)
|.|||| +||||+++++++++++++|++||+|.||+++++|||||++|+||||+|||+++||+||+ ++|||+||++
T Consensus 1 i~PhGG~~Lv~~~~~~~~~~~~~~~a~~lp~i~l~~~~~~dleli~~G~fsPL~GFM~~~dy~~V~--~~~rL~~G~~-- 76 (160)
T PF14306_consen 1 IEPHGGKKLVNLVVPEDEREELKEEAESLPSIELSKRQLCDLELIANGAFSPLTGFMNEEDYESVL--ETMRLPDGTL-- 76 (160)
T ss_dssp ---TTSSS--BHBHHTGGHHHHHHHHTTSEEEEE-HHHHHHHHHHHTTTTTT-SEE--HHHHHHHH--HHSBETTSSB--
T ss_pred CcCCCCCcccccccCHHHHHHHHHHHhhCCeEEeCHHHHHHHHHHhcCCCCCCccccCHHHHHHHH--hhCCcCCCCE--
Confidence 689999 99999999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cceeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeE
Q 011745 145 MSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDL 224 (478)
Q Consensus 145 wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v 224 (478)
|||||||+|+++.+++++.|++|+|+|++|+++|+|+|+|+|++||++||++||||+|++||||++++ ++|+|+|||+|
T Consensus 77 wpiPI~L~v~~e~~~~l~~G~~v~L~~~~G~~~a~l~V~evy~~dk~~ea~~vfgT~d~~HPgV~~~~-~~g~~~vgG~i 155 (160)
T PF14306_consen 77 WPIPIVLDVSEEEAKSLKEGDKVALRDPEGKPVAILEVEEVYEPDKEEEAEKVFGTTDPAHPGVAKLY-ERGDYYVGGKI 155 (160)
T ss_dssp --S---EEECHHHHTTCTTTSEEEEEETTTEEEEEEEEEEEEEECHHHHHHHHHSS-TTTSHHHHHHH-TS-SEEEEEEE
T ss_pred EeEEEEEECCHHHHHhccCCCEEEEECCCCCEEEEEEeCeeecCCHHHHHHHhhCCCCCCChHHHHHH-hcCCEEEeeEE
Confidence 79999999999999999999999999988999999999999999999999999999999999999998 79999999999
Q ss_pred EEecC
Q 011745 225 EVLKP 229 (478)
Q Consensus 225 ~~l~~ 229 (478)
+++++
T Consensus 156 ~~l~~ 160 (160)
T PF14306_consen 156 EVLNR 160 (160)
T ss_dssp EESS-
T ss_pred EEEeC
Confidence 99863
No 10
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-55 Score=440.27 Aligned_cols=350 Identities=24% Similarity=0.269 Sum_probs=321.7
Q ss_pred CccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCeeccceeeEeccCHHHHhhcCCCCeEEEeCCCCCEEE
Q 011745 99 TKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIG 178 (478)
Q Consensus 99 ~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~lA 178 (478)
++.++|+++++.+ ++|++||+++.+|.+|. -||++|+. |.+|+++++.+-.+..++.+.+.++- .+...++
T Consensus 11 tp~~~~~l~~~l~--~~~~~~~l~~~~~s~~~----~~lsv~s~--li~Pdgg~l~el~v~e~k~~~kkae~-~d~p~i~ 81 (466)
T KOG0636|consen 11 TPFQSCPLELILN--SSPLTGFLSENSYSSVV----RRLSVKSG--LIIPDGGKLVELFVNEIKRRVKKAEA-EDDPRIK 81 (466)
T ss_pred CccccCchhhhcc--CCCCcceeccccchhhe----eeeeccce--eeccCCchHHHhhccccchhhhhhhh-ccCCcee
Confidence 8899999999999 99999999999999997 57899998 78999999999999999999999986 4667999
Q ss_pred EEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEEec-CCCCCCCcCcCCCCHHHHHHHHHhcCCCe
Q 011745 179 ILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLK-PIKYNDGLDHYRLSPQQLRKEFDNRQADA 257 (478)
Q Consensus 179 iL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~-~~~~~d~f~~~r~tP~E~R~~f~~~gw~~ 257 (478)
+.+|+..|.+.+.++++.+|+ .++.||..-++++=.+.++++|.++-++ |+++ +++..+.||.+.+.+++-..|+.
T Consensus 82 l~~vdl~w~hv~segwasplr-Gfmre~e~lqtlhfn~~~l~~GS~vnmslPivl--aidd~~K~~ig~s~~v~l~~~d~ 158 (466)
T KOG0636|consen 82 LNTVDLEWVHVLSEGWASPLR-GFMRESEFLQTLHFNSLRLVDGSVVNMSLPIVL--AIDDDQKTPIGLSLEVQLVQSDG 158 (466)
T ss_pred eeeeeeEEeeecchhhhcccc-CcccchhHHhheeccceeecCceEEEeeccEEE--ecCcccccccccceeEEEecCCC
Confidence 999999999999999999997 4678999998887789999999999999 6655 79999999999999999999999
Q ss_pred EEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCC
Q 011745 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSP 337 (478)
Q Consensus 258 VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~ 337 (478)
+++||+|||+||+|.++. .++|.+.| +-.++||+||.+|++|+++.+|++.|+.... -||.+...++++|++
T Consensus 159 ~~i~~lrn~~~~aH~e~t---~R~Art~g---atv~~~P~V~~t~~~~~d~l~~~~v~v~~~~--rY~dGl~~~~L~P~a 230 (466)
T KOG0636|consen 159 NPIAILRNPMHRAHRELT---VRAARTWG---ATVLIHPVVGETKPGDIDHLTRVRVYVLIPI--RYPDGLARLSLLPLA 230 (466)
T ss_pred CeeeeecCHHhhhchHHH---HHHHHHhC---CccccccccceecCCCCcceeeeEEEEEEee--ecCCchhhhcCChHH
Confidence 999999999999999994 34566776 7799999999999999999999999997764 789998889999999
Q ss_pred cccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCceee
Q 011745 338 MHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAF 417 (478)
Q Consensus 338 mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~ 417 (478)
||++|+|||+||||+|||||++|||+||||||+|....+-+||+||+||.++..|..+.+|.+++|..+-|...++.|.|
T Consensus 231 mR~e~~r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v~gytke~dipl~~~m~q~~~~~EDv~dP 310 (466)
T KOG0636|consen 231 MRMEGDREAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLVEGYTKEDDIPLVPFMMQTYLPDEDVYDP 310 (466)
T ss_pred HhhhcchhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhhhhcccccCCcccHHHhhhccchhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999988
Q ss_pred cCCC--CCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHhhhhhhhc
Q 011745 418 FDPS--RAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYYESLQAEE 468 (478)
Q Consensus 418 ~~p~--~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~~~~~~~~ 468 (478)
.+.. -.-...+||||++|++++.|-.||+||++|||.++|+..+.+..|.+
T Consensus 311 ~~tv~si~~~~l~~sGt~~~~r~~v~arI~e~~sy~~V~r~~~~~g~P~~kq~ 363 (466)
T KOG0636|consen 311 EDTVVSIFTRTLNISGTELRRRLRVGARIPEWFSYPEVVRILRGSGPPTEKQG 363 (466)
T ss_pred cceeeeccccceeecCCcceeeeeeccccCcccccceeeechhhcCCCcccCC
Confidence 7654 24467899999999999999999999999999999999988776554
No 11
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=98.87 E-value=1.3e-08 Score=89.60 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=68.4
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC----CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK----ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPM 338 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK----~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~m 338 (478)
+-||+|+||.+|++.|.+.+ .+.+++.|.....+ ...++.+.|++..+++.+ + ...++++.+
T Consensus 7 ~Fdp~H~GH~~ll~~a~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~------~--~~~v~~~~~ 72 (143)
T cd02039 7 RFEPFHLGHLKLIKEALEEA------LDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEILK------D--RLKVVPVDF 72 (143)
T ss_pred ccCCcCHHHHHHHHHHHHHc------CCceEEEEcCCChhhcccccCCCHHHHHHHHHHhcc------C--CcEEEEEec
Confidence 89999999999998765432 14566667766554 378999999999997773 1 122445555
Q ss_pred ccCChhHHH-HHHHHHHhcCCceeeecCCCCC
Q 011745 339 HYAGPTEVQ-WHAKARINAGANFYIVGRDPAG 369 (478)
Q Consensus 339 ryAGPREAl-lHAivRkNyGcTHfIVGRDHAG 369 (478)
.+..+..+. +...+.++++|+++++|.|+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~v~G~d~~~ 104 (143)
T cd02039 73 PEVKILLAVVFILKILLKVGPDKVVVGEDFAF 104 (143)
T ss_pred ChhhccCHHHHHHHHHHHcCCcEEEECCcccc
Confidence 555566665 7777888999999999999884
No 12
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.43 E-value=5e-06 Score=84.86 Aligned_cols=167 Identities=15% Similarity=0.094 Sum_probs=102.9
Q ss_pred CCCcCcCCCCHHHHHH-HHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 011745 233 NDGLDHYRLSPQQLRK-EFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (478)
Q Consensus 233 ~d~f~~~r~tP~E~R~-~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~R 311 (478)
.++....+.+..|+.+ ....+....+|+ +-||+|+||..+++.|++.+ + -+.+++-|- +...++.+.|
T Consensus 93 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~--~FDPiH~GHl~ii~~a~~~~-d----~~~V~i~~~----~~~~~~~e~R 161 (297)
T cd02169 93 ENGKPGIEDYLKNLPKPDQPGKKIAAIVM--NANPFTLGHRYLVEKAAAEN-D----WVHLFVVSE----DKSLFSFADR 161 (297)
T ss_pred cCCchHHHHHHHHHHhhccCCCceEEEEe--cCCCCchHHHHHHHHHHhhC-C----eEEEEEEcC----CCCCCCHHHH
Confidence 3456666667777766 455566677888 99999999999998765421 1 133444342 5678999999
Q ss_pred HHHHHHHHHcCCCCCCceEEEecCCCcccC--------------------ChhHHHHHHHHHHhcCCceeeecCCCC-CC
Q 011745 312 MEQHSKVLEDGVLDPETTIVSIFPSPMHYA--------------------GPTEVQWHAKARINAGANFYIVGRDPA-GM 370 (478)
Q Consensus 312 vr~y~~ll~~~y~p~~~~~l~ilP~~mryA--------------------GPREAllHAivRkNyGcTHfIVGRDHA-Gv 370 (478)
++..+..+++ +|.= .+++.-.+..-|+ .|++ -.+ ++.+.++|.+++||-|+. |-
T Consensus 162 ~~ml~~ai~~--~~~v-~v~~~~~l~v~~~~~~~~~~~~~~~~~~~~a~lsa~~-Fi~-iL~~~l~~~~ivvG~Df~FG~ 236 (297)
T cd02169 162 FKLVKKGTKH--LKNV-TVHSGGDYIISSATFPSYFIKEQDVVIKAQTALDARI-FRK-YIAPALNITKRYVGEEPFSRV 236 (297)
T ss_pred HHHHHHHhCC--CCCE-EEEecCCeeeccccChhhhcCChhHHHHHHhcCCHHH-HHH-HHHHHcCCcEEEEcCCCCCCC
Confidence 9999999863 3431 2222222211111 4444 346 888899999999999975 32
Q ss_pred CCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCceeecCCCCCccccccCHHHHHHHHHCCC
Q 011745 371 GHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGE 442 (478)
Q Consensus 371 G~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~ 442 (478)
+ .... ..+... ....|++++..+.. .. .+ ..||.|.+|++|++|.
T Consensus 237 ~---------r~G~-~~l~~~-~~~~gf~v~~v~~~------------~~-~g---~~ISST~IR~~l~~G~ 281 (297)
T cd02169 237 T---------AIYN-QTMQEE-LLSPAIEVIEIERK------------KY-DG---QPISASTVRQLLKEGN 281 (297)
T ss_pred c---------chhH-HHHHHh-cccCCCEEEEeccc------------cc-CC---cEEcHHHHHHHHHcCC
Confidence 2 1112 333433 22335544433211 11 12 1599999999999997
No 13
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.03 E-value=0.00011 Score=70.16 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=89.1
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceE----E
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTI----V 331 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~----l 331 (478)
.+||. +.||+|+||..+.+.+++.+ + .+.+++-|- +..-++.+.|++..+.++++ +|.=.++ +
T Consensus 2 ~~~~~--~~DPiH~GHl~i~~~a~~~~-d----~~~V~v~p~----~~~~~s~e~R~~Mi~~a~~~--~~~v~v~~~~~~ 68 (182)
T smart00764 2 AAIVM--NANPFTLGHRYLVEQAAAEC-D----WVHLFVVSE----DASLFSFDERFALVKKGTKD--LDNVTVHSGSDY 68 (182)
T ss_pred ceEEE--CCCCCCHHHHHHHHHHHHHC-C----ceEEEEEeC----CCCCCCHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 46788 99999999999987665421 1 233444343 56788999999999988863 2321110 1
Q ss_pred EecC--CCccc-----------C--ChhHHHHHHHHHHhcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHHHhhcCC
Q 011745 332 SIFP--SPMHY-----------A--GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMALGL 395 (478)
Q Consensus 332 ~ilP--~~mry-----------A--GPREAllHAivRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~ 395 (478)
.+.| .+-.| | .|.+=+ + ++.+.+++.|++||.|+. |-+. - .-.+.+..+. .
T Consensus 69 ~v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi-~-~L~~~l~~~~ivvG~df~FG~~~------~----G~~~~L~~~~-~ 135 (182)
T smart00764 69 IISRATFPSYFLKEQDVVIKSQTTLDLRIFR-K-YIAPALGITHRYVGEEPFSPVTA------I----YNQTMKQTLL-S 135 (182)
T ss_pred eeccccChhhhcCchhHHHHHHhcCCHHHHH-H-HHHHHcCceEEEEcCCCCCCCCC------c----cCHHHHHHHh-h
Confidence 2333 22233 2 454433 5 578889999999999965 3221 1 1123444442 3
Q ss_pred CcceeeEeeeEEEecccCceeecCCCCCccccccCHHHHHHHHHCCC
Q 011745 396 EKLNILPFRVAAYDTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGE 442 (478)
Q Consensus 396 ~~i~i~~f~~~~Y~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~ 442 (478)
.++++.+.+...+ + -..+|+|.+|++|.+|.
T Consensus 136 ~g~~v~~I~r~~~-------------~---g~~iSST~IR~~L~~G~ 166 (182)
T smart00764 136 PAIEVVEIERKKA-------------N---GQPISASTVRKLLKEGN 166 (182)
T ss_pred CCCEEEEEecccC-------------C---CcEECHHHHHHHHHcCC
Confidence 4566665532111 1 22599999999999997
No 14
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=97.83 E-value=0.00042 Score=63.97 Aligned_cols=145 Identities=19% Similarity=0.212 Sum_probs=84.5
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAG 342 (478)
|-||+|.||..+.+.|.+ .. +-+++-|..-..|..-++.+.|++-.+.++++ .| . +. +.+..
T Consensus 7 sFdP~H~GHl~l~~~a~~----~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~~--~~-~-~~--v~~~e----- 68 (153)
T cd02163 7 SFDPITNGHLDIIERASK----LF---DEVIVAVAVNPSKKPLFSLEERVELIREATKH--LP-N-VE--VDGFD----- 68 (153)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CEEEEEEcCCCCCCCCCCHHHHHHHHHHHHcC--CC-C-EE--ecCCc-----
Confidence 789999999999876543 32 44544455444466679999999999987752 33 2 22 33321
Q ss_pred hhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhh-cCCCcceeeEeeeEEEecccCceeecCCC
Q 011745 343 PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA-LGLEKLNILPFRVAAYDTVEKKMAFFDPS 421 (478)
Q Consensus 343 PREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~-~~~~~i~i~~f~~~~Y~~~~~~~~~~~p~ 421 (478)
-+-.-.-+-+++++||+|-| .+++- +.++... ....+ . .++..+...+
T Consensus 69 ----s~t~~~l~~l~~~~~i~G~d-----------~~~~~---e~~~~~~~~~r~~-~----------~~~~~i~~~~-- 117 (153)
T cd02163 69 ----GLLVDFARKHGANVIVRGLR-----------AVSDF---EYEFQMAGMNRKL-A----------PEIETVFLMA-- 117 (153)
T ss_pred ----chHHHHHHHcCCCEEEECCc-----------chhhH---HHHHHHHHhCCCC-C----------CCCcEEEEeC--
Confidence 11122236779999999977 23322 2232211 00000 0 0011111111
Q ss_pred CCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHH
Q 011745 422 RAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLV 458 (478)
Q Consensus 422 ~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~ 458 (478)
......||.|.+|+++++|+. ...+.++.|++-+.
T Consensus 118 -~~~~~~iSST~IR~~~~~g~~-i~~lvP~~V~~yI~ 152 (153)
T cd02163 118 -SPEYSFISSSLVKEIARFGGD-VSGFVPPVVAKALK 152 (153)
T ss_pred -CCccceecHHHHHHHHHcCCC-hhHhCCHHHHHHHh
Confidence 112234999999999999976 46788888888665
No 15
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=97.83 E-value=0.00028 Score=67.18 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=86.3
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcc-c--cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP-L--GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~P-l--vG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
+-||+|.||..+++.+++ .. +-+.|-+ - .-.++..-++.+.|++-.+..+.+.=++.+++. +.|.+=.
T Consensus 7 rF~P~H~GHl~~i~~a~~----~~---~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~--i~pi~D~ 77 (181)
T cd02168 7 RFQPFHNGHLAVVLIALE----KA---KKVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADLARVH--FRPLRDH 77 (181)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcceEE--EEecCCC
Confidence 678999999999876543 32 2333311 1 123556779999999999988764334555544 5554322
Q ss_pred cCChhHHHHHHHHHHhcCCceeeecC-CCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCceeec
Q 011745 340 YAGPTEVQWHAKARINAGANFYIVGR-DPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF 418 (478)
Q Consensus 340 yAGPREAllHAivRkNyGcTHfIVGR-DHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~ 418 (478)
...+..|-+-+++.--. ++-+. |-+=+|++.++..||- .-|+++.|..
T Consensus 78 --~~~~~~W~~~v~~~v~~--~~~~~~~i~~~g~~kd~~~~~~-------------------~lfpe~~~~~-------- 126 (181)
T cd02168 78 --LYSDNLWLAEVQQQVLE--IAGGSASVGLVGHRKDASSYYL-------------------RSFPQWDYLE-------- 126 (181)
T ss_pred --CCChHHHHHHHHHhChH--hhCCCCcEEEeCCccCCCccce-------------------eecCCcCeec--------
Confidence 13577898766533211 11110 1111122122223332 1133322221
Q ss_pred CCCCCccccccCHHHHHHHHHCC-CCCCCCCCchhHHHHHHHH
Q 011745 419 DPSRAKDFLFISGTKMRTFARSG-ENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 419 ~p~~~~~~~~iSGT~vR~~L~~G-~~pP~~F~rPeV~~iL~~~ 460 (478)
+|. ...||+|.+|+++.+| ......+.+|.|++.|.+.
T Consensus 127 ~p~----~~~iSsT~IR~~i~~~~g~~~~~lvP~~V~~~I~~~ 165 (181)
T cd02168 127 VPN----YPDLNATDIRRAYFEGKEAMYRAALPAGVYDFLTAF 165 (181)
T ss_pred Ccc----ccccCHHHHHHHHHhcCCCChhHhCCHHHHHHHHHh
Confidence 011 1269999999999995 2334567899999998876
No 16
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=97.82 E-value=0.0009 Score=62.13 Aligned_cols=147 Identities=19% Similarity=0.211 Sum_probs=88.4
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccC
Q 011745 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA 341 (478)
Q Consensus 262 QTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryA 341 (478)
=|-||+|.||..+.+.| .+.+ +-+++-|..-..|...++.+.|++-.+..++ .+|. +.+..+ . -|
T Consensus 8 GsFdP~H~GHl~~~~~a----~~~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~--~~~~--v~v~~~--e-~~- 72 (159)
T PRK00168 8 GSFDPITNGHLDIIERA----SRLF---DEVIVAVAINPSKKPLFSLEERVELIREATA--HLPN--VEVVSF--D-GL- 72 (159)
T ss_pred eecCCCCHHHHHHHHHH----HHHC---CEEEEEECCCCCCCCCCCHHHHHHHHHHHHc--CCCC--EEEecC--C-cc-
Confidence 48999999999997654 3443 4455534333345678999999999998775 3332 333332 2 11
Q ss_pred ChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHh--hc--CCCcceeeEeeeEEEecccCceee
Q 011745 342 GPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSM--AL--GLEKLNILPFRVAAYDTVEKKMAF 417 (478)
Q Consensus 342 GPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~--~~--~~~~i~i~~f~~~~Y~~~~~~~~~ 417 (478)
. .-..+-+++++|+.|=| ..++. +.+++. .. +...++.+ |.
T Consensus 73 -t------~~~~~~~~~~~~~~gl~-----------~w~d~---e~~~~~~~~~r~~~~~~~~i------~~-------- 117 (159)
T PRK00168 73 -L------VDFAREVGATVIVRGLR-----------AVSDF---EYEFQMAGMNRKLAPEIETV------FL-------- 117 (159)
T ss_pred -H------HHHHHHcCCCEEEecCc-----------chhhH---HHHHHHHHhCCCCCCCCcEE------EE--------
Confidence 1 11235678999987755 12211 222221 11 11111111 11
Q ss_pred cCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHhh
Q 011745 418 FDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYYE 462 (478)
Q Consensus 418 ~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~~ 462 (478)
. .......||.|.+|++++.|+ ....|.++.|++.|.+.++
T Consensus 118 ~---~~~~~~~ISST~IR~~i~~g~-~i~~lVP~~V~~yI~~~~~ 158 (159)
T PRK00168 118 M---PSPEYSFISSSLVKEVARLGG-DVSGFVPPAVAKALKEKFA 158 (159)
T ss_pred e---CCCCcceecHHHHHHHHHcCC-ChhHHCCHHHHHHHHHHhc
Confidence 1 111223599999999999997 5789999999999988764
No 17
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=97.75 E-value=0.00065 Score=64.00 Aligned_cols=144 Identities=14% Similarity=0.100 Sum_probs=89.6
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEc-cccC--CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLH-PLGG--FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~-PlvG--~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
+-||+|.||..+++.|. +. ++-|.|- |-.. .++...++++.|++-.+..+. ..+ +.. +.++|.+-.
T Consensus 7 ~FdP~H~GHl~ii~~a~----~~---~D~lii~i~s~~~~~k~~~p~~~~eR~~mi~~al~--~~~-~~~-~~~vP~~d~ 75 (165)
T TIGR01527 7 RFQPFHLGHLEVIKKIA----EE---VDELIIGIGSAQESHTLENPFTAGERILMITQSLK--EVG-DLT-YYIIPIEDI 75 (165)
T ss_pred ccCCCCHHHHHHHHHHH----HH---CCEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHh--cCC-Cce-EEEEecCCc
Confidence 67899999999987654 33 2445541 2111 123567899999998877775 333 222 336665322
Q ss_pred cCChhHHHHHHHHHHhcC-CceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCceeec
Q 011745 340 YAGPTEVQWHAKARINAG-ANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF 418 (478)
Q Consensus 340 yAGPREAllHAivRkNyG-cTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~ 418 (478)
.....|-+.++.--. .+.+ |.+...-+++|++ .|++++.++
T Consensus 76 ---~~~~~w~~~v~~~~p~~D~v-----------------f~~~~~~~~~f~e----~g~~v~~~p-------------- 117 (165)
T TIGR01527 76 ---ERNSIWVSYVESMTPPFDVV-----------------YSNNPLVRRLFKE----AGYEVKRPP-------------- 117 (165)
T ss_pred ---cHHHHHHHHHHHhCCCCCEE-----------------EECCHHHHHHHHH----cCCEEEECC--------------
Confidence 357789888874443 1222 2222222555543 345554331
Q ss_pred CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 419 DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 419 ~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
- -++..+|||++|+++.+|++ =+.+-+|.|+++|.+.
T Consensus 118 --~--~~r~~~S~T~IR~~i~~~~~-W~~lVP~~v~~~i~~i 154 (165)
T TIGR01527 118 --M--FNRKEYSGTEIRRRMLNGED-WEHLVPKAVADVIKEI 154 (165)
T ss_pred --C--cCCCcccHHHHHHHHHcCCC-hhhhCCHHHHHHHHHc
Confidence 0 01226899999999999977 6678999999999875
No 18
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=97.69 E-value=0.00056 Score=64.86 Aligned_cols=167 Identities=20% Similarity=0.259 Sum_probs=98.5
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCC-C-CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCccc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT-K-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY 340 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~t-K-~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mry 340 (478)
|-||+|.||..+++.|.+.+ + .+-+++-|-.... | ....+.+.|++-.+.+++ ..| + +.+-+...+-
T Consensus 7 sFdP~H~GH~~~~~~a~~~~---~--~d~v~~~~~~~~~~k~~~~~~~~~R~~m~~~~~~--~~~-~---i~v~~~e~~~ 75 (192)
T cd02165 7 SFDPPHLGHLAIAEEALEEL---G--LDRVLLLPSANPPHKPPKPASFEHRLEMLKLAIE--DNP-K---FEVSDIEIKR 75 (192)
T ss_pred CCCCCCHHHHHHHHHHHHHc---C--CCEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHc--CCC-C---EEEeHHHHhC
Confidence 88999999999987664422 1 1344444544332 2 378999999999998885 223 2 4455666666
Q ss_pred CChhHHH--HHHHHHHhcC-Cc-eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEE--------
Q 011745 341 AGPTEVQ--WHAKARINAG-AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAY-------- 408 (478)
Q Consensus 341 AGPREAl--lHAivRkNyG-cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y-------- 408 (478)
.||.-.+ +..+ ++.|+ +. .||+|-|.--=- ..+| ++++|++.+. +-+++ --.|
T Consensus 76 ~~~~~t~~tl~~l-~~~~p~~~~~~liG~D~l~~~-----~~W~---~~~~i~~~~~----~iv~~--R~g~~~~~~~~~ 140 (192)
T cd02165 76 DGPSYTIDTLEEL-RERYPNAELYFIIGSDNLIRL-----PKWY---DWEELLSLVH----LVVAP--RPGYPIEDASLE 140 (192)
T ss_pred CCCCCHHHHHHHH-HHhccCCCEEEEEcHHHhhhc-----cccc---CHHHHHHhCc----EEEEe--CCCCCcccchhh
Confidence 6665543 3333 44464 55 688899854211 1233 3477776432 22211 1001
Q ss_pred --ecccCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 409 --DTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 409 --~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
...++.+... ......||.|++|+.++.|+.+. .+..|+|.+.+.+.
T Consensus 141 ~~~~~~~~~~~~----~~~~~~iSST~IR~~~~~g~~~~-~lvp~~V~~yI~~~ 189 (192)
T cd02165 141 KLLLPGGRIILL----DNPLLNISSTEIRERLKNGKSIR-YLLPPAVADYIKEH 189 (192)
T ss_pred hhccCCCcEEEe----cCCccccCHHHHHHHHHcCCChh-HhCCHHHHHHHHHc
Confidence 0011111111 11235699999999999997654 77999999988753
No 19
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=97.66 E-value=0.0016 Score=60.79 Aligned_cols=146 Identities=15% Similarity=0.112 Sum_probs=88.2
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEc-cccC--CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLH-PLGG--FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~-PlvG--~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
+-||+|.||..+++.|++ .. +-|++- |-.. .++..-++.+.|++-.+..+.+.-++.+++.+ .|..-.
T Consensus 7 ~FdP~H~GHl~~i~~a~~----~~---d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v--~~~~d~ 77 (163)
T cd02166 7 RFQPFHLGHLKVIKWILE----EV---DELIIGIGSAQESHTLENPFTAGERVLMIRRALEEEGIDLSRYYI--IPVPDI 77 (163)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEE--EecCCC
Confidence 678999999999876543 32 444441 1111 12345588899999999777643245555554 454322
Q ss_pred cCChhHHHHHHHHHHhcC-CceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCceeec
Q 011745 340 YAGPTEVQWHAKARINAG-ANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF 418 (478)
Q Consensus 340 yAGPREAllHAivRkNyG-cTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~ 418 (478)
+ ....|-+-++.... ++.+++|+ +||. ..++. .|+.++.++
T Consensus 78 ~---~~~~w~~~v~~~vp~~div~~g~------------~~~~--------~~f~~-~g~~v~~~p-------------- 119 (163)
T cd02166 78 E---RNSLWVSYVESLTPPFDVVYSGN------------PLVA--------RLFKE-AGYEVRRPP-------------- 119 (163)
T ss_pred C---chHHHHHHHHHHCCCCCEEEECc------------hHHH--------Hhhhh-cCCeEecCC--------------
Confidence 3 45678888876555 44445553 1332 23332 244443331
Q ss_pred CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 419 DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 419 ~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
.. ++..||+|++|+++.+|+..-. +..|.|++.|.++
T Consensus 120 --~~--~~~~~s~t~iR~~~~~~~~~~~-~vp~~v~~~l~~~ 156 (163)
T cd02166 120 --MF--NREEYSGTEIRRLMLGGEDWEE-LVPKSVAEVIKEI 156 (163)
T ss_pred --cc--cCCCCCHHHHHHHHHcCCchhh-cCCHHHHHHHHHc
Confidence 10 1335999999999988766544 3789999988765
No 20
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=97.62 E-value=0.0011 Score=65.33 Aligned_cols=183 Identities=15% Similarity=0.107 Sum_probs=103.9
Q ss_pred eEEeec--cCCCCchhhHHHHHHHHHHHHHc-CCCCCeEEEccc-cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 011745 257 AIFAFQ--LRNPIHNGHALLMNDTRRRLLEM-GYKNPILLLHPL-GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (478)
Q Consensus 257 ~VvaFQ--TRNPlHRaHe~l~r~a~~~ale~-g~~~~~lLL~Pl-vG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ 332 (478)
+||++- |-||+|.||..+.+.|.+. ++. ++.....++.|. ....|++-++.+.|++-.+..+++ .| -+.
T Consensus 22 ~~v~i~GGSFdP~H~gHl~ia~~a~~~-l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~----~~~ 94 (236)
T PLN02945 22 RVVLVATGSFNPPTYMHLRMFELARDA-LMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACED--SD----FIM 94 (236)
T ss_pred eEEEEEcCCCCCCcHHHHHHHHHHHHH-HhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC--CC----CeE
Confidence 344444 7999999999998877653 333 111112356665 333567889999999988877752 12 245
Q ss_pred ecCCCcccCChhHHHHH-HHHHHhcC---------Cc-eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceee
Q 011745 333 IFPSPMHYAGPTEVQWH-AKARINAG---------AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNIL 401 (478)
Q Consensus 333 ilP~~mryAGPREAllH-AivRkNyG---------cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~ 401 (478)
+-+....-.|+.-.+-. ..+++-|+ +. .||+|-|---=- .....|...+-++|++... +-++
T Consensus 95 V~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l---~~~~~W~~~~~~~l~~~~~----~vV~ 167 (236)
T PLN02945 95 VDPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDLLESF---STPGVWIPDQVRTICRDYG----VVCI 167 (236)
T ss_pred ecHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhHHHhc---CCCCcCCHHHHHHHHHhCC----EEEE
Confidence 66777777776533322 23566563 22 488898853110 0001233334455776542 2121
Q ss_pred EeeeEEEec------------ccCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHH
Q 011745 402 PFRVAAYDT------------VEKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQ 459 (478)
Q Consensus 402 ~f~~~~Y~~------------~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~ 459 (478)
+ --.|.. .++.+...++. ....||.|.+|+++++|+.+. .+..|+|.+-+++
T Consensus 168 ~--R~g~~~~~~~~~~~~l~~~~~~i~~~~~~---~~~~ISST~IR~~l~~g~~i~-~lvP~~V~~YI~~ 231 (236)
T PLN02945 168 R--REGQDVEKLVSQDEILNENRGNILVVDDL---VPNSISSTRVRECISRGLSVK-YLTPDGVIDYIKE 231 (236)
T ss_pred e--CCCCCHHHHhhcchhhhhCcCCEEEeccc---ccccccHHHHHHHHHcCCCch-hhCCHHHHHHHHH
Confidence 1 111110 00111111111 124699999999999998754 7899999998875
No 21
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=97.60 E-value=0.0011 Score=68.73 Aligned_cols=147 Identities=15% Similarity=0.159 Sum_probs=91.3
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcccc---CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG---GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Plv---G~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
+-||+|.||..+++.++ +.. +-++|-|-. -.++.+-++++.|++-.+..+. -++..++. ++|..=.
T Consensus 14 ~F~P~H~GHl~~i~~a~----~~~---d~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~~~~--~~~~~r~~--~~pi~d~ 82 (340)
T PRK05379 14 RFQPFHNGHLAVIREAL----SRA---KKVIVLIGSADLARSIKNPFSFEERAQMIRAALA--GIDLARVT--IRPLRDS 82 (340)
T ss_pred ccCCCCHHHHHHHHHHH----HHC---CEEEEEEccCCCCCcCCCCCCHHHHHHHHHHHhh--cCCCceEE--EEECCCC
Confidence 78899999999987654 332 445553321 1356678999999999998886 34555544 5554322
Q ss_pred cCChhHHHHHHHHHHhc------CCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccC
Q 011745 340 YAGPTEVQWHAKARINA------GANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEK 413 (478)
Q Consensus 340 yAGPREAllHAivRkNy------GcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~ 413 (478)
. ..+..|-+-|++.- ..+-.++|.|- ++..|| ...|++ +-|.+
T Consensus 83 ~--~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~-------~~~~~~--------~~~f~~-----------~~~~~--- 131 (340)
T PRK05379 83 L--YNDSLWLAEVQAAVAEHAGADARIGLIGHEK-------DASSYY--------LRSFPQ-----------WELVD--- 131 (340)
T ss_pred C--cChHHHHHHHHHHHHhccCCCCcEEEECCcC-------CCChHH--------HHhccc-----------ccccc---
Confidence 1 35778888876422 22333444332 112233 122222 11110
Q ss_pred ceeecCCCCCccccccCHHHHHHHHHCCCCCCCC--CCchhHHHHHHHH
Q 011745 414 KMAFFDPSRAKDFLFISGTKMRTFARSGENPPDG--FMCPGGWKVLVQY 460 (478)
Q Consensus 414 ~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~--F~rPeV~~iL~~~ 460 (478)
.+ .+..||||.+|+++.+|.....| ..+|.|++.|.++
T Consensus 132 -----~~----~~~~~s~T~iR~~~~~~~~~~~~~~~vP~~v~~~l~~~ 171 (340)
T PRK05379 132 -----VP----NTEDLSATEIRDAYFEGRISSFYGWAVPAPVYAFLEAF 171 (340)
T ss_pred -----CC----cccccCccHHHHHHHcCCCchhhhhcCCHHHHHHHHHh
Confidence 11 34469999999999999986665 8999999998877
No 22
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=97.58 E-value=0.0018 Score=59.85 Aligned_cols=147 Identities=19% Similarity=0.219 Sum_probs=85.7
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAG 342 (478)
|-||+|.||..+.+.|. +.. +-+++-|..-+.|...++.+.|++-.+..+.+ +| + ..+ .+.. +
T Consensus 7 sFdP~H~GHl~l~~~a~----~~~---d~v~~~~~~~p~k~~~~~~~~R~~m~~~a~~~--~~-~-~~v--~~~e----~ 69 (155)
T TIGR01510 7 SFDPVTNGHLDIIKRAA----ALF---DEVIVAVAKNPSKKPLFSLEERVELIKDATKH--LP-N-VRV--DVFD----G 69 (155)
T ss_pred ecCCCcHHHHHHHHHHH----HhC---CEEEEEEcCCCCCCCCcCHHHHHHHHHHHHhh--CC-C-eEE--cCcc----c
Confidence 88999999999987653 332 44555455445566789999999999888852 34 2 333 3333 1
Q ss_pred hhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCceeecCCCC
Q 011745 343 PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFFDPSR 422 (478)
Q Consensus 343 PREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~~p~~ 422 (478)
. .. =.-+-+...+||.|-|.. ++- +++++... ... ... ..+...... .
T Consensus 70 y---t~--dt~~~l~~~~~i~G~~~~-----------~~~---~~~~~~~~-~~r----~~~-----~~~~~i~~~---~ 117 (155)
T TIGR01510 70 L---LV--DYAKELGATFIVRGLRAA-----------TDF---EYELQMAL-MNK----HLA-----PEIETVFLM---A 117 (155)
T ss_pred h---HH--HHHHHcCCCEEEecCcch-----------hhH---HHHHHHHh-hCc----ccc-----cCCcEEEEe---C
Confidence 1 12 223455678898776632 111 12332211 000 000 000101110 1
Q ss_pred CccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHH
Q 011745 423 AKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQ 459 (478)
Q Consensus 423 ~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~ 459 (478)
......||.|.+|++++.|+. ...+.+|+|++-+.+
T Consensus 118 ~~~~~~iSST~IR~~i~~g~~-~~~lvP~~V~~YI~~ 153 (155)
T TIGR01510 118 SPEYAFVSSSLVKEIASFGGD-VSNLVPPAVARRLKA 153 (155)
T ss_pred CcchhhccHHHHHHHHHcCCC-hhHHCCHHHHHHHHH
Confidence 112336999999999999985 577999999998865
No 23
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=97.55 E-value=0.002 Score=60.80 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=84.5
Q ss_pred EEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC----C--CCCCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 011745 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG----F--TKADDVPLDVRMEQHSKVLEDGVLDPETTIV 331 (478)
Q Consensus 258 VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG----~--tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l 331 (478)
|+++=+-+|+|+||..|++.|.+.|-+.+.....+...|... . ...--.+.+.|++-.+.+- =+ .++
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~------vd-~v~ 74 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG------VD-YLL 74 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC------CC-EEE
Confidence 455558999999999999988776654432223333344321 1 1223467888988665431 23 233
Q ss_pred EecCCCcccC--ChhHHHHHHHHHHhcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEE
Q 011745 332 SIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAY 408 (478)
Q Consensus 332 ~ilP~~mryA--GPREAllHAivRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y 408 (478)
++|....++ .| |..+..++-+. ++.+++||.|+. |-. ...+...+ ..+....|++++..+..-|
T Consensus 75 -~~~f~~~~~~~s~-~~Fi~~il~~~-~~~~ivvG~Df~FG~~---------~~g~~~~L-~~~~~~~g~~v~~v~~~~~ 141 (180)
T cd02064 75 -VLPFDKEFASLSA-EEFVEDLLVKL-NAKHVVVGFDFRFGKG---------RSGDAELL-KELGKKYGFEVTVVPPVTL 141 (180)
T ss_pred -EeCCCHHHHcCCH-HHHHHHHHhhc-CCeEEEEccCCCCCCC---------CCCCHHHH-HHhhhhcCcEEEEeCcEec
Confidence 556554444 34 44555555444 999999999976 322 11112222 2222233454444322111
Q ss_pred ecccCceeecCCCCCccccccCHHHHHHHHHCCC
Q 011745 409 DTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGE 442 (478)
Q Consensus 409 ~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~ 442 (478)
+...||.|++|++|++|.
T Consensus 142 ----------------~~~~iSST~IR~~i~~G~ 159 (180)
T cd02064 142 ----------------DGERVSSTRIREALAEGD 159 (180)
T ss_pred ----------------CCcEEcHHHHHHHHHhCC
Confidence 112599999999999996
No 24
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.52 E-value=0.0018 Score=61.45 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=87.6
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcccc---CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG---GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Plv---G~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
+-||+|.||..+++.|++ . ++-+++-+-. ..++...++.+.|++-.+..+.+.-.+.+++. ++|.+-.
T Consensus 8 ~F~P~H~GHl~~i~~a~~----~---~d~v~v~i~s~~~~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~--~~pi~D~ 78 (174)
T PRK01153 8 RFQPFHKGHLEVIKWILE----E---VDELIIGIGSAQESHTLKNPFTAGERILMIRKALEEEGIDLSRYY--IIPIPDI 78 (174)
T ss_pred ccCCCCHHHHHHHHHHHH----h---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCcceee--EecCCCc
Confidence 678999999999876543 2 3445552211 12355678999999999988864334434333 5554322
Q ss_pred cCChhHHHHHHHHHHhcCCce-eeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCceeec
Q 011745 340 YAGPTEVQWHAKARINAGANF-YIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF 418 (478)
Q Consensus 340 yAGPREAllHAivRkNyGcTH-fIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~ 418 (478)
..+..|-+-+++--..-. .+.| + .|| ...|++ .|+.++..+ + +
T Consensus 79 ---~~~~~w~~~v~~~~~~~d~v~~~-~-----------~y~--------~~~f~~-~g~~v~~~p-~-~---------- 122 (174)
T PRK01153 79 ---EFNSIWVSHVESYTPPFDVVYTG-N-----------PLV--------ARLFRE-AGYEVRQPP-M-F---------- 122 (174)
T ss_pred ---chHHHHHHHHHHhCCCCCEEEEC-C-----------hHH--------HHhchh-hCCeEecCC-c-c----------
Confidence 257788888865544221 2222 1 122 233432 345444321 0 0
Q ss_pred CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 419 DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 419 ~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
.+-.||||+||+++.+|..... .-.|.|++.|.++
T Consensus 123 ------~~~~iSsT~IR~~i~~g~~w~~-~VPp~V~~~i~~~ 157 (174)
T PRK01153 123 ------NREEYSGTEIRRRMIEGDPWEE-LVPKSVAEVIKEI 157 (174)
T ss_pred ------ccCCCCHHHHHHHHHcCCchhh-hCCHHHHHHHHHh
Confidence 1336999999999999985322 3789999988876
No 25
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.51 E-value=0.00092 Score=64.81 Aligned_cols=149 Identities=11% Similarity=0.044 Sum_probs=89.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC-----CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 011745 264 RNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-----FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPM 338 (478)
Q Consensus 264 RNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG-----~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~m 338 (478)
-+|+|.||.++++.|++ . ++-+.| .+| .+..+-+.+.-|+.-....+.+. ...++ -++|..=
T Consensus 13 FQPfH~GHl~~I~~al~----~---~devII--~IGSA~~s~t~~NPFTa~ER~~MI~~aL~e~--~~~rv--~~ipi~D 79 (196)
T PRK13793 13 FQPFHLAHMQTIEIALQ----Q---SRYVIL--ALGSAQMERNIKNPFLAIEREQMILSNFSLD--EQKRI--RFVHVVD 79 (196)
T ss_pred CCCCcHHHHHHHHHHHH----h---CCEEEE--EEccCCCCCCCCCCCCHHHHHHHHHHhcchh--hcceE--EEEecCC
Confidence 34999999999876543 3 244444 344 34456688889988777666421 22333 3566642
Q ss_pred ccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCceeec
Q 011745 339 HYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF 418 (478)
Q Consensus 339 ryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~ 418 (478)
. .++++|-+-+++--- -++..+ ..-.++..+.++.+..+.-|+++-+.. .
T Consensus 80 ~---~~~~~Wv~~V~~~v~---~v~~~n-----------------~~V~~~g~~k~e~s~~l~~fpew~~v~-------~ 129 (196)
T PRK13793 80 V---YNDEKWVKQVKSLVN---GVIEPN-----------------SKVGLIGHFKDESSYYLRLFPEWVMVE-------L 129 (196)
T ss_pred c---cchhHHHHHHHHhch---hhccCC-----------------CcceeecccccCceEEEEeCCCCceee-------c
Confidence 2 479999999998652 111111 111111122234445555555544422 1
Q ss_pred CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 419 DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 419 ~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
.+. +-.+|||+||+++-+|.+ =+...+|.|+++|.+.
T Consensus 130 ~~~----r~~~SaT~IR~~~~~g~~-w~~lVP~~V~~~l~~~ 166 (196)
T PRK13793 130 DSL----KDSISATPMREAYYQGKI-KTDAFPKGTIQFLEEF 166 (196)
T ss_pred ccc----cCccchHHHHHHHHcCCC-hhhhCCHHHHHHHHHh
Confidence 221 446899999999999986 2234899999999877
No 26
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=97.50 E-value=0.002 Score=61.71 Aligned_cols=167 Identities=17% Similarity=0.247 Sum_probs=96.0
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCC-CC--CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF-TK--ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~-tK--~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
+-||+|.||..|.+.+++ ..+. +-+++-|-.-. .| ...++.+.|++-.+.++++ .|. +.+-+....
T Consensus 12 sFdP~H~GH~~l~~~a~~---~~~~--d~v~~~p~~~~~~k~~~~~~~~~~R~~m~~~a~~~--~~~----~~v~~~E~~ 80 (203)
T PRK00071 12 TFDPPHYGHLAIAEEAAE---RLGL--DEVWFLPNPGPPHKPQKPLAPLEHRLAMLELAIAD--NPR----FSVSDIELE 80 (203)
T ss_pred CCCccCHHHHHHHHHHHH---HcCC--CEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHhcC--CCc----eEEeHHHHh
Confidence 899999999999876643 2222 22333333211 12 3678999999999988862 332 334444333
Q ss_pred cCChhHHH--HHHHHHHhcCCc--eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecc----
Q 011745 340 YAGPTEVQ--WHAKARINAGAN--FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTV---- 411 (478)
Q Consensus 340 yAGPREAl--lHAivRkNyGcT--HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~---- 411 (478)
-.||.=.+ +. .+++.|.-. .||+|.|-.- +|-.-++.++|++... +-+++ -..|...
T Consensus 81 ~~~~syT~~tl~-~l~~~~p~~~~~fiiG~D~l~--------~l~~W~~~~~i~~~~~----~iv~~--R~g~~~~~~~~ 145 (203)
T PRK00071 81 RPGPSYTIDTLR-ELRARYPDVELVFIIGADALA--------QLPRWKRWEEILDLVH----FVVVP--RPGYPLEALAL 145 (203)
T ss_pred CCCCCCHHHHHH-HHHHHCCCCcEEEEEcHHHhh--------hcccccCHHHHHHhCc----EEEEe--CCCCCccccch
Confidence 34443222 22 234556433 5899999432 3434456788887542 22221 1111100
Q ss_pred ---------cCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 412 ---------EKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 412 ---------~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
++.+... + .....||.|++|+++++|+.+ ..+..|+|.+-+.+.
T Consensus 146 ~~~~~~~~~~~~i~~~-~---~~~~~ISST~IR~~l~~g~~~-~~lvp~~V~~YI~~~ 198 (203)
T PRK00071 146 PALQQLLEAAGAITLL-D---VPLLAISSTAIRERIKEGRPI-RYLLPEAVLDYIEKH 198 (203)
T ss_pred hHHHHhhccCCCEEEE-e---CCCCccCHHHHHHHHHcCCCh-hHhCCHHHHHHHHHh
Confidence 1111111 1 122469999999999999864 678999999988763
No 27
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=97.34 E-value=0.0035 Score=59.19 Aligned_cols=150 Identities=14% Similarity=0.120 Sum_probs=87.4
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCccc-
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY- 340 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG-~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mry- 340 (478)
|-||+|.||..+.+. +. + -+-+++-|-.. ..+..-++.+.|++-.+.++++ .=.++ ..+ -....+-
T Consensus 10 SFDP~H~GHl~ia~~----~~--~--~d~v~~vP~~~~~~~k~~~~~~~R~~M~~~ai~~-~~~~~-~~v--~~~E~~~~ 77 (174)
T PRK08887 10 AFNPPSLGHKSVIES----LS--H--FDLVLLVPSIAHAWGKTMLDYETRCQLVDAFIQD-LGLSN-VQR--SDIEQELY 77 (174)
T ss_pred CCCCCCHHHHHHHHH----hh--c--CCEEEEEECCCCcccCCCCCHHHHHHHHHHHHhc-cCCCc-eEE--ehHHhhhc
Confidence 799999999999654 21 2 13444446542 2233778999999999988863 21122 333 2333332
Q ss_pred --CChhH--HHHHHHHHHhcC-Cc-eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCc
Q 011745 341 --AGPTE--VQWHAKARINAG-AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKK 414 (478)
Q Consensus 341 --AGPRE--AllHAivRkNyG-cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~ 414 (478)
.||.= ..+-.+ ++.|. +. .||+|-|-.-= |-.=+++++|++... ++.+
T Consensus 78 ~~~~~~yT~~tl~~l-~~~~p~~~~~~iiG~D~l~~--------l~~W~~~~~i~~~~~------l~~~----------- 131 (174)
T PRK08887 78 APDESVTTYALLTRL-QELYPEADLTFVIGPDNFLK--------FAKFYKADEITQRWT------VMAC----------- 131 (174)
T ss_pred cCCCCcchHHHHHHH-HHHCCCCeEEEEEccchHHH--------HHHhCCHHHHHhhCe------EEEe-----------
Confidence 33321 122333 33353 22 27889885531 211223455554321 1111
Q ss_pred eeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 415 MAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 415 ~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
| ....||.|++|++++.|..+. .+..++|.+-|.+.
T Consensus 132 -----~----~~~~ISST~IR~~l~~g~~i~-~lvp~~V~~yI~~~ 167 (174)
T PRK08887 132 -----P----EKVPIRSTDIRNALQNGKDIS-HLTTPGVARLLKEH 167 (174)
T ss_pred -----C----CCCCcCHHHHHHHHHcCCChh-HhCCHHHHHHHHHc
Confidence 1 134699999999999999866 78999999988763
No 28
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=97.33 E-value=0.0033 Score=59.89 Aligned_cols=167 Identities=18% Similarity=0.220 Sum_probs=97.4
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCC-C--CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT-K--ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~t-K--~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
|-||+|.||..+.+.|++. .+ .+.+++-|..... | ..-++.+.|++-.+.++++ .| . +.+-....+
T Consensus 5 sFdP~H~GHl~l~~~a~~~---~~--~d~v~~~p~~~~p~k~~~~~~~~~~R~~m~~~a~~~--~~-~---~~v~~~E~~ 73 (193)
T TIGR00482 5 SFDPIHYGHLLLAEEALDH---LD--LDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAIED--NP-K---FEVDDFEIK 73 (193)
T ss_pred cCCccCHHHHHHHHHHHHH---cC--CCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhc--CC-C---EEEeHHHHh
Confidence 7899999999998765432 22 2344443543321 3 2448999999999988863 23 2 334455556
Q ss_pred cCChhH--HHHHHHHHHhcC-Cc-eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecc----
Q 011745 340 YAGPTE--VQWHAKARINAG-AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTV---- 411 (478)
Q Consensus 340 yAGPRE--AllHAivRkNyG-cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~---- 411 (478)
-.||.= -.+ ..+++.|. +. .||+|-|-.-=-. .+| +.++|++... +-+++ -.-|...
T Consensus 74 ~~~~syT~~tl-~~l~~~~p~~~~~~iiG~D~l~~l~-----~W~---~~~~i~~~~~----~iv~~--R~g~~~~~~~~ 138 (193)
T TIGR00482 74 RGGPSYTIDTL-KHLKKKYPDVELYFIIGADALRSFP-----LWK---DWQELLELVH----LVIVP--RPGYTLDKALL 138 (193)
T ss_pred CCCCCCHHHHH-HHHHHHCCCCeEEEEEcHHHhhhhc-----ccc---CHHHHHHhCc----EEEEe--CCCCCcchhhh
Confidence 666622 223 33455564 33 5899999664221 233 6677876532 21211 1111100
Q ss_pred --------cCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 412 --------EKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 412 --------~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
.+.+... + .....||.|++|+++++|+.+. .+..|+|.+-+.+.
T Consensus 139 ~~~~~~~~~~~i~~~-~---~~~~~iSST~IR~~l~~g~~~~-~lvP~~V~~YI~~~ 190 (193)
T TIGR00482 139 EKAILRMHHGNLTLL-H---NPRVPISSTEIRQRIRQGKSIE-YLLPDPVIKYIKQH 190 (193)
T ss_pred HHHHhcccCCcEEEE-c---CCccccCHHHHHHHHHcCCCch-hhCCHHHHHHHHHh
Confidence 0111111 1 1125799999999999998754 67899999988764
No 29
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=97.22 E-value=0.011 Score=58.92 Aligned_cols=174 Identities=22% Similarity=0.249 Sum_probs=101.3
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcccc-CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccC
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG-GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA 341 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Plv-G~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryA 341 (478)
|-||+|.||..+.+.+.+ ..+. +-+++-|.. .+.|....+.+.|++-.+.++++.-.+ + .-+.+-.....-.
T Consensus 30 SFdPiH~GHl~ia~~~~~---~l~l--d~v~~iP~~~pp~K~~~~~~~~Rl~M~~lAi~~~~~~-~-~~~~v~~~Ei~~~ 102 (243)
T PRK06973 30 TFDPIHDGHLALARRFAD---VLDL--TELVLIPAGQPWQKADVSAAEHRLAMTRAAAASLVLP-G-VTVRVATDEIEHA 102 (243)
T ss_pred CCCCCcHHHHHHHHHHHH---HcCC--CEEEEEECCcCCCCCCCCCHHHHHHHHHHHHHhccCC-C-ceEEEeHhhhhCC
Confidence 899999999999765544 2232 334444653 344556789999999998888631112 1 1244555555557
Q ss_pred ChhHHH-HHHHHHHhcC--Cc-eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecc------
Q 011745 342 GPTEVQ-WHAKARINAG--AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTV------ 411 (478)
Q Consensus 342 GPREAl-lHAivRkNyG--cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~------ 411 (478)
||.=.+ -=..+++.|| +. .||+|-|..-- |=.=++.++|++... +-+++ -..|...
T Consensus 103 g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~--------l~~W~~~~~L~~~~~----lvV~~--R~g~~~~~~~~~~ 168 (243)
T PRK06973 103 GPTYTVDTLARWRERIGPDASLALLIGADQLVR--------LDTWRDWRRLFDYAH----LCAAT--RPGFDLGAASPAV 168 (243)
T ss_pred CCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhh--------cCCcccHHHHHHhCC----EEEEE--CCCCCcccchhHH
Confidence 776543 1133566683 43 68999996532 222345688887542 21211 1111000
Q ss_pred -----------------cCceeecCCCCCccccccCHHHHHHHHHCCC-------CCCCCCCchhHHHHHHHH
Q 011745 412 -----------------EKKMAFFDPSRAKDFLFISGTKMRTFARSGE-------NPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 412 -----------------~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~-------~pP~~F~rPeV~~iL~~~ 460 (478)
.......++ .....||.|++|++|++|. .....+..++|++-+.+.
T Consensus 169 ~~~l~~~~~~~~~l~~~~~g~~~~~~---~~~~~ISST~IR~~l~~g~~~~~~~~~~i~~lvP~~V~~YI~~~ 238 (243)
T PRK06973 169 AAEIAARQADADVLQATPAGHLLIDT---TLAFDLSATDIRAHLRACIARRAQVPDASAEHVPAAVWAYILQH 238 (243)
T ss_pred HHHHhhhhhhhhhhhcCCCceEEEcC---CCcccccHHHHHHHHHcCCCcccccCCChhHhCCHHHHHHHHHc
Confidence 000111111 1234699999999999992 345578889999988764
No 30
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=97.07 E-value=0.0047 Score=63.06 Aligned_cols=144 Identities=18% Similarity=0.229 Sum_probs=84.3
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcccc----C-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCC
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG----G-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSP 337 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Plv----G-~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~ 337 (478)
.-+-+|+||..|++.+.+.|.+.+..-.++-..|.. . ...+--.+.+.|.+-++.+ -=+ .++ ++|..
T Consensus 6 ~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~------Gvd-~~~-~~~F~ 77 (288)
T TIGR00083 6 YFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK------GVE-QLL-VVVFD 77 (288)
T ss_pred eCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc------CCC-EEE-EeCCC
Confidence 678999999999999988877766443333333321 1 1112244567776644432 223 334 77765
Q ss_pred cccC--ChhHHHHHHHHHHhcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCc
Q 011745 338 MHYA--GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKK 414 (478)
Q Consensus 338 mryA--GPREAllHAivRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~ 414 (478)
..+| .| |.-..-++.+.+++.+++||-|+. |-+ ...+++ .+..+....|+.+...+
T Consensus 78 ~~~a~ls~-e~Fi~~~l~~~l~~~~ivvG~Df~FG~~---------~~G~~~-~L~~~~~~~g~~v~~~~---------- 136 (288)
T TIGR00083 78 EEFANLSA-LQFIDQLIVKHLHVKFLVVGDDFRFGHD---------RQGDFL-LLQLFGNTTIFCVIVKQ---------- 136 (288)
T ss_pred HHHHcCCH-HHHHHHHHHhccCCcEEEECCCccCCCC---------CCCCHH-HHHHhccccCcEEEEec----------
Confidence 4433 44 445566777889999999999976 432 111222 23333223343322211
Q ss_pred eeecCCCCCccccccCHHHHHHHHHCCC
Q 011745 415 MAFFDPSRAKDFLFISGTKMRTFARSGE 442 (478)
Q Consensus 415 ~~~~~p~~~~~~~~iSGT~vR~~L~~G~ 442 (478)
+. ..+ ..||.|.+|++|++|.
T Consensus 137 -----~~-~~~-~~ISST~IR~~l~~G~ 157 (288)
T TIGR00083 137 -----LF-CQD-IRISSSAIRQALKNGD 157 (288)
T ss_pred -----cc-cCC-CeECHHHHHHHHHcCC
Confidence 11 123 5699999999999997
No 31
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=96.95 E-value=0.0089 Score=61.94 Aligned_cols=163 Identities=14% Similarity=0.147 Sum_probs=90.4
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcccc-CCCC-CCCCCh-HHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG-GFTK-ADDVPL-DVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Plv-G~tK-~~Di~~-~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
|-||+|.||..+.+.+++ ..+. +-+++-|-. -+-| ....+. +.|++-.+.++++ .| . +.+-+...+
T Consensus 9 sFdP~H~GHl~la~~a~~---~~~~--d~v~~~p~~~~p~K~~~~~~~~~~R~~m~~~a~~~--~~-~---~~v~~~E~~ 77 (342)
T PRK07152 9 SFDPIHKGHINIAKKAIK---KLKL--DKLFFVPTYINPFKKKQKASNGEHRLNMLKLALKN--LP-K---MEVSDFEIK 77 (342)
T ss_pred CCCCcCHHHHHHHHHHHH---HhCC--CEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhh--CC-C---eEEeHHHHh
Confidence 899999999999765543 2232 334443532 2223 344554 8899988888863 23 2 334444444
Q ss_pred cCChhHH-HHHHHHHHhcCCc--eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEeccc----
Q 011745 340 YAGPTEV-QWHAKARINAGAN--FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVE---- 412 (478)
Q Consensus 340 yAGPREA-llHAivRkNyGcT--HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~---- 412 (478)
-.||.=. ---..+++.|.=+ .||+|-|-.. +|-.-.+.++|++... +-+++ -..|....
T Consensus 78 ~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~--------~l~~W~~~~~l~~~~~----~iv~~--R~g~~~~~~~~~ 143 (342)
T PRK07152 78 RQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLE--------KFKKWKNIEEILKKVQ----IVVFK--RKKNINKKNLKK 143 (342)
T ss_pred CCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhh--------hcccccCHHHHHHhCC----EEEEE--CCCCCccccccc
Confidence 4565311 1123345557433 6799999654 2333345677876532 22221 11111110
Q ss_pred CceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 413 KKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 413 ~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
..+.. .+ .....||.|++|+++++|+ .+|+|++.+.+.
T Consensus 144 ~~i~~-~~---~~~~~iSST~IR~~~~~~~------vP~~V~~YI~~~ 181 (342)
T PRK07152 144 YNVLL-LK---NKNLNISSTKIRKGNLLGK------LDPKVNDYINEN 181 (342)
T ss_pred CcEEE-ec---CCccccCHHHHHHHHHcCC------CCHHHHHHHHHc
Confidence 00111 11 1235699999999999998 567899888765
No 32
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=96.88 E-value=0.04 Score=54.24 Aligned_cols=178 Identities=16% Similarity=0.095 Sum_probs=97.4
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcC-CCCCeEEEcccc-CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCccc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMG-YKNPILLLHPLG-GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY 340 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g-~~~~~lLL~Plv-G~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mry 340 (478)
|-||+|.||..+.+.+.+.+-..+ +......+.|.. .+.|..-.+.+.|++-.+..+.+ .|. +.+-+....-
T Consensus 8 SFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~~----~~v~~~E~~~ 81 (225)
T cd09286 8 SFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQS--SDW----IRVDDWESLQ 81 (225)
T ss_pred CcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHcc--CCC----EEEEehhccC
Confidence 799999999999877655332111 001112344642 24577788999999988877752 232 3355666666
Q ss_pred CChhHHH--HHHHHHHhcC--------------------Cc-eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCc
Q 011745 341 AGPTEVQ--WHAKARINAG--------------------AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEK 397 (478)
Q Consensus 341 AGPREAl--lHAivRkNyG--------------------cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~ 397 (478)
.||.-.+ +..+ ++-|. +. .||+|-|..-=- .....|.+.+.++|+..+.
T Consensus 82 ~~~syT~~TL~~l-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~fiiG~D~l~~l---~~~~~W~~~~~e~ll~~~~---- 153 (225)
T cd09286 82 PEWMRTAKVLRHH-REEINNKYGGIEGAAKRVLDGSRREVKIMLLCGADLLESF---GIPGLWKDADLEEILGEFG---- 153 (225)
T ss_pred CccccHHHHHHHH-HHHhcccccccccccccccccccCCceEEEEecHhHHHhc---CCCCcCCHHHHHHHHHhCC----
Confidence 6663322 2222 33332 44 488899955311 0001233334677876542
Q ss_pred ceeeEeeeEEEec------------ccCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 398 LNILPFRVAAYDT------------VEKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 398 i~i~~f~~~~Y~~------------~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
+-+++ --.|.. ..+.+.. .+. .....||.|++|+++++|+.+ ..+..++|.+.+.+.
T Consensus 154 ~vv~~--R~g~~~~~~~~~~~~l~~~~~~i~~-~~~--~~~~~ISST~IR~~l~~g~~~-~~llp~~V~~YI~~~ 222 (225)
T cd09286 154 LVVVE--RTGSDPENFIASSDILRKYQDNIHL-VKD--WIPNDISSTKVRRALRRGMSV-KYLLPDPVIEYIEQH 222 (225)
T ss_pred EEEEe--CCCCCHHHhhhccchhHHhhCCEEE-Eec--CcccccChHHHHHHHHcCCCc-hhcCCHHHHHHHHHc
Confidence 22221 111110 0011111 110 011269999999999999764 477899999888763
No 33
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=96.73 E-value=0.031 Score=52.58 Aligned_cols=147 Identities=18% Similarity=0.205 Sum_probs=98.2
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAG 342 (478)
|-+|++.||..++++|.+..-++- .+++.||- |..-++.+-|++-.+.... -+|.-++.- |.|
T Consensus 10 SFDPiTnGHlDii~RA~~~Fd~vi---VaV~~np~----K~plFsleER~~l~~~~~~--~l~nV~V~~--------f~~ 72 (159)
T COG0669 10 SFDPITNGHLDIIKRASALFDEVI---VAVAINPS----KKPLFSLEERVELIREATK--HLPNVEVVG--------FSG 72 (159)
T ss_pred CCCCCccchHHHHHHHHHhccEEE---EEEEeCCC----cCCCcCHHHHHHHHHHHhc--CCCceEEEe--------ccc
Confidence 789999999999987754332221 34666666 9999999999999988875 566543322 233
Q ss_pred hhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCC-cceeeEeeeEEEecccCceeecCCC
Q 011745 343 PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLE-KLNILPFRVAAYDTVEKKMAFFDPS 421 (478)
Q Consensus 343 PREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~-~i~i~~f~~~~Y~~~~~~~~~~~p~ 421 (478)
|=+=++|..||+.+|=|=--+. || .|+-|--.- -..+. +|+.+++ .
T Consensus 73 -----Llvd~ak~~~a~~ivRGLR~~s--------Df--eYE~qma~~-N~~L~~eveTvFl------~----------- 119 (159)
T COG0669 73 -----LLVDYAKKLGATVLVRGLRAVS--------DF--EYELQMAHM-NRKLAPEVETVFL------M----------- 119 (159)
T ss_pred -----HHHHHHHHcCCCEEEEeccccc--------hH--HHHHHHHHH-HHhhcccccEEEe------c-----------
Confidence 4566788999999997643111 22 133332111 01111 3555544 1
Q ss_pred CCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 422 RAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 422 ~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
......+||.|-||+..+-|..+- .|-+|+|.+.|++-
T Consensus 120 ~s~~~~~iSSs~Vreia~~ggdvs-~~VP~~V~~~l~~k 157 (159)
T COG0669 120 PSPEYSFISSSLVREIAAFGGDVS-EFVPEAVARALRAK 157 (159)
T ss_pred CCcceehhhHHHHHHHHHhCCCch-hhCCHHHHHHHHHh
Confidence 234667899999999999999885 58899999988864
No 34
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=96.59 E-value=0.015 Score=60.58 Aligned_cols=171 Identities=18% Similarity=0.164 Sum_probs=98.5
Q ss_pred CCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEE--
Q 011745 254 QADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIV-- 331 (478)
Q Consensus 254 gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l-- 331 (478)
..-.+++ +.||+|.||.+|+++|. +. ++-+.| .|...+..-++.+.|++-.+..+++ +|.= .++
T Consensus 140 ~i~~~~g--~fdP~t~GH~~li~~A~----~~---~d~~~v--~v~~~~~~~f~~~~R~~~v~~~~~~--~~nv-~v~~~ 205 (332)
T TIGR00124 140 KIGSIVM--NANPFTNGHRYLIEQAA----RQ---CDWLHL--FVVKEDASLFSYDERFALVKQGIQD--LSNV-TVHNG 205 (332)
T ss_pred cEEEEEe--CcCCCchHHHHHHHHHH----HH---CCEEEE--EEEeCCCCCCCHHHHHHHHHHHhcC--CCCE-EEEec
Confidence 3445677 99999999999987653 33 233332 1123456699999999998888863 3431 122
Q ss_pred -------EecCCCccc-CCh---hH-----HHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHH-hhcC
Q 011745 332 -------SIFPSPMHY-AGP---TE-----VQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLS-MALG 394 (478)
Q Consensus 332 -------~ilP~~mry-AGP---RE-----AllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~-~~~~ 394 (478)
+.||.--.- .+. -. .||--.|+..+|.||=-||-++--.= ...|.. .-++++. ..++
T Consensus 206 ~~~~is~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~-----t~~yn~-~m~~~~~~~~~~ 279 (332)
T TIGR00124 206 SAYIISRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV-----TALYNQ-KMKYWLEEPNDA 279 (332)
T ss_pred CCceeccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh-----HHHHHH-HHHHhhhccCCC
Confidence 123311110 011 11 23444577789999999999966443 134532 1133332 2232
Q ss_pred CCcceeeEeeeEEEecccCceeecCCCCCccccccCHHHHHHHHHCCC-CCCCCCCchhHHHHHHHHh
Q 011745 395 LEKLNILPFRVAAYDTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGE-NPPDGFMCPGGWKVLVQYY 461 (478)
Q Consensus 395 ~~~i~i~~f~~~~Y~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~-~pP~~F~rPeV~~iL~~~~ 461 (478)
.+|++++.+-.-. . -..+|.|.||++|.+|. .-=..+.++...+.|.++.
T Consensus 280 -~~I~~~~I~R~~~-------------~---~~~~SASaIR~~L~~~~~~~i~~~VP~~t~~~l~~~~ 330 (332)
T TIGR00124 280 -PPIEVVEIQRKLA-------------A---GGPISASTVRELLAKGDWAAWAKLVPETTLHFLQNLL 330 (332)
T ss_pred -CCcEEEEEeeecC-------------C---CCeeCHHHHHHHHHcCCHHHHHHhCCHHHHHHHHHhh
Confidence 3577777632111 1 22699999999999875 1112255666666666553
No 35
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=96.54 E-value=0.039 Score=53.59 Aligned_cols=167 Identities=17% Similarity=0.270 Sum_probs=97.8
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC--CCC-CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG--FTK-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG--~tK-~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
|-||+|-||..+.+.+++ .++.+ .++++ |..+ .++ .+-.|.+.|++-.+.++++ -|+ +.+--..+.
T Consensus 11 sFdP~H~GHl~ia~~~~~---~l~ld-~vi~~-ps~~~p~k~~~~~a~~~~R~~Ml~la~~~--~~~----~~v~~~e~~ 79 (197)
T COG1057 11 SFDPPHYGHLLIAEEALD---QLGLD-KVIFL-PSPVPPHKKKKELASAEHRLAMLELAIED--NPR----FEVSDREIK 79 (197)
T ss_pred CCCCCCHHHHHHHHHHHH---hcCCC-eEEEe-cCCCCCCCCCccCCCHHHHHHHHHHHHhc--CCC----cceeHHHHH
Confidence 799999999999876654 23322 23333 3333 233 5689999999999988874 232 223344455
Q ss_pred cCChh---HHHHHHHHHHhcCCc-eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEe------
Q 011745 340 YAGPT---EVQWHAKARINAGAN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYD------ 409 (478)
Q Consensus 340 yAGPR---EAllHAivRkNyGcT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~------ 409 (478)
--|+. +.|-|-.-+.|-.+. -||+|.|.-- .|--=++.++|++... + +-++.-.|+
T Consensus 80 r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~--------~l~~W~~~~ell~~~~----~--vv~~Rp~~~~~~~~~ 145 (197)
T COG1057 80 RGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLA--------SLPKWYDWDELLKLVT----F--VVAPRPGYGELELSL 145 (197)
T ss_pred cCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhh--------hhhhhhhHHHHHHhCC----E--EEEecCCchhhhhhh
Confidence 55654 566654434444442 3899999642 2323346677876542 2 222222222
Q ss_pred -cccCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHH
Q 011745 410 -TVEKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQ 459 (478)
Q Consensus 410 -~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~ 459 (478)
..++.+... ......||.|.+|++++.|+.+ .....++|.+-+.+
T Consensus 146 ~~~~~~~~~~----~~~~~~ISSt~IR~~~~~~~~~-~~llP~~V~~YI~~ 191 (197)
T COG1057 146 LSSGGAIILL----DLPRLDISSTEIRERIRRGASV-DYLLPDSVLSYIEE 191 (197)
T ss_pred hcCCceEEEc----cCccccCchHHHHHHHhCCCCc-hhcCCHHHHHHHHH
Confidence 111111111 1234469999999999999765 45667788776654
No 36
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=96.42 E-value=0.072 Score=54.87 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=86.1
Q ss_pred eEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC-----CC-CCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 011745 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-----FT-KADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (478)
Q Consensus 257 ~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG-----~t-K~~Di~~~~Rvr~y~~ll~~~y~p~~~~~ 330 (478)
.|+++=+-+-+|+||..|++.|.+.|-+.+..-.++-..|..- .. ..--.+.+.|.+..+.+- =+ .+
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g------VD-~~ 87 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG------VD-YV 87 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC------CC-EE
Confidence 6777779999999999999988776655542211222222211 11 122456788877665431 23 23
Q ss_pred EEecCCCcccCC-hhHHHHHHHHHHhcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEE
Q 011745 331 VSIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAY 408 (478)
Q Consensus 331 l~ilP~~mryAG-PREAllHAivRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y 408 (478)
+ ++|....++. +-|..++-++.+.+++.+++||.|+. |-+ ...+++ .+..+....|+.++..+..
T Consensus 88 ~-~~~F~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~---------~~G~~~-~L~~~~~~~g~~v~~v~~~-- 154 (305)
T PRK05627 88 L-VLPFDEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKK---------RAGDFE-LLKEAGKEFGFEVTIVPEV-- 154 (305)
T ss_pred E-EecCCHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCC---------CCCCHH-HHHHHHHHcCcEEEEeccE--
Confidence 3 4665322221 23556677888899999999999985 321 111122 2222222233433332221
Q ss_pred ecccCceeecCCCCCccccccCHHHHHHHHHCCC
Q 011745 409 DTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGE 442 (478)
Q Consensus 409 ~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~ 442 (478)
.. +-..||.|.+|++|++|.
T Consensus 155 ~~--------------~~~~ISST~IR~~I~~G~ 174 (305)
T PRK05627 155 KE--------------DGERVSSTAIRQALAEGD 174 (305)
T ss_pred ec--------------CCCcCchHHHHHHHHcCC
Confidence 10 112599999999999996
No 37
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=96.38 E-value=0.045 Score=50.49 Aligned_cols=131 Identities=17% Similarity=0.089 Sum_probs=78.2
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAG 342 (478)
|-||+|.||..++++|. +.. +-+.+-|..-..|...++.+.|++-.+.+++ -+|.-.+ ... +.|
T Consensus 9 SFDPih~GHl~ii~~A~----~~~---D~v~v~v~~np~K~~~~s~e~R~~~l~~~~~--~~~~v~v-~~~------~~~ 72 (140)
T PRK13964 9 SFDPFHKGHLNILKKAL----KLF---DKVYVVVSINPDKSNASDLDSRFKNVKNKLK--DFKNVEV-LIN------ENK 72 (140)
T ss_pred eeCCCCHHHHHHHHHHH----HhC---CEEEEEeccCCCCCCCCCHHHHHHHHHHHHc--CCCCcEE-ecC------cCC
Confidence 88999999999987654 332 4445545555567778999999999988886 3454222 211 112
Q ss_pred hhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCC-CcceeeEeeeEEEecccCceeecCCC
Q 011745 343 PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGL-EKLNILPFRVAAYDTVEKKMAFFDPS 421 (478)
Q Consensus 343 PREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~-~~i~i~~f~~~~Y~~~~~~~~~~~p~ 421 (478)
++ .=+.+..||+-+|-|=.-. . ||= |+-| +..+-..+ .+|+.+++ .
T Consensus 73 ----l~-v~~~~~~~a~~ivrGlR~~--~------Dfe--yE~~-~a~~n~~l~~~ietvfl-----------------~ 119 (140)
T PRK13964 73 ----LT-AEIAKKLGANFLIRSARNN--I------DFQ--YEIV-LAAGNKSLNNDLETILI-----------------I 119 (140)
T ss_pred ----cH-HHHHHHCCCeEEEEecCCC--c------cHH--HHHH-HHHHHHhhcCCCeEEEe-----------------e
Confidence 11 2255777999888774421 1 121 2222 11111112 24666655 1
Q ss_pred CCccccccCHHHHHHHHHCCC
Q 011745 422 RAKDFLFISGTKMRTFARSGE 442 (478)
Q Consensus 422 ~~~~~~~iSGT~vR~~L~~G~ 442 (478)
...+...||.|.||+..+-|+
T Consensus 120 ~~~~~~~iSSs~vre~~~~~~ 140 (140)
T PRK13964 120 PDYDKIEYSSTLLRHKKFLKK 140 (140)
T ss_pred cCCCCCEEeHHHHHHHHHccC
Confidence 233556899999999998774
No 38
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=96.35 E-value=0.048 Score=56.28 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=89.7
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCC------CCChHHHHHHHHHHHHcCCCCCCce
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKAD------DVPLDVRMEQHSKVLEDGVLDPETT 329 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~------Di~~~~Rvr~y~~ll~~~y~p~~~~ 329 (478)
..|++.=--+=+|+||..|++.+.+.|.+.+....++...|..-+...- -.+...|.+..+ -|.=+ .
T Consensus 16 ~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~------~~gvd-~ 88 (304)
T COG0196 16 GCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLA------GYGVD-A 88 (304)
T ss_pred CcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHH------hcCCc-E
Confidence 3455544778899999999999988887766444455565543332222 234455555333 23334 3
Q ss_pred EEEecCCCcccC--ChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEE
Q 011745 330 IVSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAA 407 (478)
Q Consensus 330 ~l~ilP~~mryA--GPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~ 407 (478)
++ +++..-.+| .|. .-.+ ++-++..|.|++||-|.- -|. +-.+ .-+.+..+... |++++..+
T Consensus 89 ~~-v~~F~~~fa~ls~~-~Fv~-~lv~~l~~k~ivvG~DF~-FGk-----~~~g---~~~~L~~~~~~-gf~v~~v~--- 152 (304)
T COG0196 89 LV-VLDFDLEFANLSAE-EFVE-LLVEKLNVKHIVVGFDFR-FGK-----GRQG---NAELLRELGQK-GFEVTIVP--- 152 (304)
T ss_pred EE-EEeCCHhHhhCCHH-HHHH-HHHhccCCcEEEEecccc-cCC-----CCCC---CHHHHHHhccC-CceEEEec---
Confidence 33 667665555 554 4555 899999999999999953 121 1111 12334444333 55444321
Q ss_pred EecccCceeecCCCCCccccccCHHHHHHHHHCCCC
Q 011745 408 YDTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGEN 443 (478)
Q Consensus 408 Y~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~ 443 (478)
+.+ ++...||.|.+|+.|++|.-
T Consensus 153 ---------~~~----~~~~~iSSt~IR~~L~~gdl 175 (304)
T COG0196 153 ---------KIN----EEGIRISSTAIRQALREGDL 175 (304)
T ss_pred ---------cEe----cCCcEEchHHHHHHHhcCCH
Confidence 011 12257999999999999963
No 39
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=96.20 E-value=0.073 Score=51.13 Aligned_cols=148 Identities=19% Similarity=0.204 Sum_probs=85.7
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCC------CCce
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLD------PETT 329 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p------~~~~ 329 (478)
.+||. ..||.+.||.||+..|. .+ |+.|.|--+ ......+|.+.|.+-.+.=.. -++ .+..
T Consensus 2 gaIVM--NaNPFT~GH~yLiE~Aa---~~----~d~l~vFVV--~eD~S~Fpf~~R~~LVk~G~~--~L~NV~V~~~g~Y 68 (182)
T PF08218_consen 2 GAIVM--NANPFTLGHRYLIEQAA---KE----CDWLHVFVV--SEDRSLFPFADRYELVKEGTA--DLPNVTVHPGGDY 68 (182)
T ss_pred ceEEE--cCCCCccHHHHHHHHHH---Hh----CCEEEEEEE--ccccCcCCHHHHHHHHHHHhC--cCCCEEEEcCCCe
Confidence 35777 89999999999986542 22 466655323 445567999999884443332 132 2222
Q ss_pred EE--EecCCCcccCChhH---------HHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcc
Q 011745 330 IV--SIFPSPMHYAGPTE---------VQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKL 398 (478)
Q Consensus 330 ~l--~ilP~~mryAGPRE---------AllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i 398 (478)
++ +.||.--.-..-.. .+|--.|+..+|.|+=.||-++-..=. ..|.. .-+++| | ..||
T Consensus 69 iIS~aTFPsYFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT-----~~YN~-~M~~~L---p-~~gi 138 (182)
T PF08218_consen 69 IISSATFPSYFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVT-----RIYNE-AMKEIL---P-PYGI 138 (182)
T ss_pred eeecccChhhhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHH-----HHHHH-HHHHhc---c-ccCC
Confidence 32 23442211111111 244456888999999999998664421 23311 112333 3 3456
Q ss_pred eeeEeeeEEEecccCceeecCCCCCccccccCHHHHHHHHHCCC
Q 011745 399 NILPFRVAAYDTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGE 442 (478)
Q Consensus 399 ~i~~f~~~~Y~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~ 442 (478)
+++..+-. ...-.-||-++||++|++|.
T Consensus 139 ~v~ei~R~----------------~~~g~~ISAS~VR~~l~~~~ 166 (182)
T PF08218_consen 139 EVVEIPRK----------------EINGEPISASRVRKLLKEGD 166 (182)
T ss_pred EEEEEecc----------------cCCCcEEcHHHHHHHHHcCC
Confidence 66655211 11223699999999999994
No 40
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=96.07 E-value=0.14 Score=47.69 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=52.3
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCC---CCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT---KADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~t---K~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
+-||+|.||..+++.|++ . ++-|+|-|-.-.. +..-++.+.|++-.+..+.+ ++ .+.+..++.+-.
T Consensus 7 ~F~P~H~GHl~li~~a~~----~---~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~--~~--~~~v~~~~~~d~ 75 (158)
T cd02167 7 KFAPLHTGHVYLIYKALS----Q---VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPD--QE--NIVVHTLNEPDI 75 (158)
T ss_pred ccCCCCHHHHHHHHHHHH----H---CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC--CC--CEEEEeCCCCCC
Confidence 789999999999876543 3 2555553432221 23368999999988887752 22 355667775443
Q ss_pred -cCChhHHHHHHHHHHhcC
Q 011745 340 -YAGPTEVQWHAKARINAG 357 (478)
Q Consensus 340 -yAGPREAllHAivRkNyG 357 (478)
|--..-..|-+.|+...+
T Consensus 76 ~~~~~~w~~w~~~v~~~v~ 94 (158)
T cd02167 76 PEYPNGWDIWSNRVKTLIA 94 (158)
T ss_pred CCCchhHHHHHHHHHHHHh
Confidence 222234455777776655
No 41
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=94.73 E-value=0.13 Score=45.53 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=50.6
Q ss_pred eEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 011745 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (478)
Q Consensus 257 ~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG-~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP 335 (478)
.|++.=+-+++|+||..+++.|.+.+.++- .++.-.++.. ..+.--.+.+.|++..+.+ ++. + .+ +|
T Consensus 3 ~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~---v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~---~~v--d-~v---~~ 70 (129)
T cd02171 3 VVITYGTFDLLHIGHLNLLERAKALGDKLI---VAVSTDEFNAGKGKKAVIPYEQRAEILESI---RYV--D-LV---IP 70 (129)
T ss_pred EEEEeeeeccCCHHHHHHHHHHHHhCCEEE---EEEeccHhHHhcCCCCCCCHHHHHHHHHcC---Ccc--C-EE---ec
Confidence 455555889999999999976643221110 1111111111 1123446778898876643 111 2 12 22
Q ss_pred CCcccCChhHHHHHHHHHHhcCCceeeecCCCC
Q 011745 336 SPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (478)
Q Consensus 336 ~~mryAGPREAllHAivRkNyGcTHfIVGRDHA 368 (478)
+..+.+-+-. + +.+.++++++|.|+.
T Consensus 71 ----~~~~~~f~~~--~-~~l~~~~vv~G~d~~ 96 (129)
T cd02171 71 ----ETNWEQKIED--I-KKYNVDVFVMGDDWE 96 (129)
T ss_pred ----CCCccChHHH--H-HHhCCCEEEECCCCc
Confidence 2334332222 2 678999999999984
No 42
>PRK07143 hypothetical protein; Provisional
Probab=94.52 E-value=0.36 Score=49.33 Aligned_cols=141 Identities=15% Similarity=0.221 Sum_probs=77.0
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEE--ccccC-CCCCC-CCChHHHHHHHHHHHHcCCCCCCceEE
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL--HPLGG-FTKAD-DVPLDVRMEQHSKVLEDGVLDPETTIV 331 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL--~PlvG-~tK~~-Di~~~~Rvr~y~~ll~~~y~p~~~~~l 331 (478)
..|+++=.-+-+|+||..|++.|. +.+.. .+++. ||..= ..++. -.+.+.|.+..+.+ --+ .++
T Consensus 16 ~~vvaiG~FDGvH~GHq~Ll~~a~----~~~~~-~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~------Gvd-~~~ 83 (279)
T PRK07143 16 KPTFVLGGFESFHLGHLELFKKAK----ESNDE-IVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL------GFK-NII 83 (279)
T ss_pred CeEEEEccCCcCCHHHHHHHHHHH----HCCCc-EEEEEeCChHHhcccCcccCCCHHHHHHHHHHC------CCC-EEE
Confidence 357777799999999999997664 34311 12222 33210 01111 34556676654422 123 233
Q ss_pred EecCCC--cccCChhHHHHHHHHHHhcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEE
Q 011745 332 SIFPSP--MHYAGPTEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAY 408 (478)
Q Consensus 332 ~ilP~~--mryAGPREAllHAivRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y 408 (478)
++|.. +.--.|.|=+-+ ++ + +++.+++||.|+. |=+. ..+. +.+..+.+ .+.+++. . .
T Consensus 84 -~~~F~~~~a~ls~e~Fi~~-ll-~-l~~~~iVvG~Df~FG~~r---------~G~~-~~L~~~~~--~v~~v~~--~-~ 144 (279)
T PRK07143 84 -LLDFNEELQNLSGNDFIEK-LT-K-NQVSFFVVGKDFRFGKNA---------SWNA-DDLKEYFP--NVHIVEI--L-K 144 (279)
T ss_pred -EeCCCHHHhCCCHHHHHHH-HH-h-cCCCEEEECCCcccCCCC---------CCCH-HHHHHhCC--cEEEeCC--E-E
Confidence 66754 444567554433 44 4 9999999999987 5331 0111 22222211 2333332 0 0
Q ss_pred ecccCceeecCCCCCccccccCHHHHHHHHHCCC
Q 011745 409 DTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGE 442 (478)
Q Consensus 409 ~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~ 442 (478)
. ++ ..||.|.+|++|++|.
T Consensus 145 -----------~-~g---~~ISST~IR~~l~~G~ 163 (279)
T PRK07143 145 -----------I-NQ---QKISTSLLKEFIEFGD 163 (279)
T ss_pred -----------c-CC---cEEcHHHHHHHHHcCC
Confidence 0 11 2699999999999996
No 43
>PRK13670 hypothetical protein; Provisional
Probab=94.13 E-value=0.19 Score=53.49 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=58.6
Q ss_pred EEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccc--cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 011745 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL--GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (478)
Q Consensus 258 VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Pl--vG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP 335 (478)
|+| =-||+|+||.++++.+.+.+-+ + ....++ |- +....+--++-+.|.+... . +--| .++ .+|
T Consensus 6 IIa--Efdg~H~GH~~~i~~a~~~a~~-~--~~~~Vm-p~~f~qrg~p~i~~~~~R~~~a~---~---~GvD-~vi-elp 71 (388)
T PRK13670 6 IIV--EYNPFHNGHLYHLNQAKKLTNA-D--VTIAVM-SGNFVQRGEPAIVDKWTRAKMAL---E---NGVD-LVV-ELP 71 (388)
T ss_pred EEe--eeCCcCHHHHHHHHHHHHHHhC-C--CcEEEe-cHHHhCCCCCCCCCHHHHHHHHH---H---cCCC-EEE-EeC
Confidence 455 5799999999999887665533 3 122222 32 2111233677888887443 2 2234 444 788
Q ss_pred CCcccCChhHHHHHH--HHHHhcCCceeeecCCCCC
Q 011745 336 SPMHYAGPTEVQWHA--KARINAGANFYIVGRDPAG 369 (478)
Q Consensus 336 ~~mryAGPREAllHA--ivRkNyGcTHfIVGRDHAG 369 (478)
..+--..|.+=+-.| ++ ..+||+|+++|-|..+
T Consensus 72 f~~a~~sae~F~~~aV~iL-~~l~v~~lv~G~e~g~ 106 (388)
T PRK13670 72 FLYSVQSADFFAEGAVSIL-DALGVDSLVFGSESGD 106 (388)
T ss_pred CchHhCCHHHHHHhHHHHH-HHcCCCEEEEcCCCCC
Confidence 773333444333332 67 8899999999999444
No 44
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=93.70 E-value=1.6 Score=40.69 Aligned_cols=137 Identities=20% Similarity=0.205 Sum_probs=77.4
Q ss_pred eEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC----C-CCCCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 011745 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG----F-TKADDVPLDVRMEQHSKVLEDGVLDPETTIV 331 (478)
Q Consensus 257 ~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG----~-tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l 331 (478)
+|+..=|-||+|.||..+.+.| .+.+ +-+++-.-.. . ++.--.+.+.|++..+.+++ +..|..+..
T Consensus 3 ~v~~gGtFDplH~GH~~ll~~A----~~~~---d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~-~~~~~~~~~- 73 (153)
T PRK00777 3 KVAVGGTFDPLHDGHRALLRKA----FELG---KRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLK-AVEYDREYE- 73 (153)
T ss_pred EEEEecccCCCCHHHHHHHHHH----HHcC---CEEEEEEcCCccccccCCCCCCCHHHHHHHHHHHHH-hcCCCCcEE-
Confidence 3444458999999999998755 3444 3344311111 1 22346799999999998885 455655433
Q ss_pred EecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecc
Q 011745 332 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTV 411 (478)
Q Consensus 332 ~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~ 411 (478)
+.|..-. .||. +..+ .+-++||.|- +.+...-.++..+ .|+.+++++-++..-|
T Consensus 74 -i~~i~d~-~gp~-------~~~~--~d~ivvs~et-----------~~~~~~in~~r~~-~gl~~l~i~~v~~~~~--- 127 (153)
T PRK00777 74 -IVKIDDP-YGPA-------LEDD--FDAIVVSPET-----------YPGALKINEIRRE-RGLKPLEIVVIDFVLA--- 127 (153)
T ss_pred -EEecccc-CCCc-------cccC--CCEEEEChhh-----------hhhHHHHHHHHHH-CCCCceEEEEEeeeec---
Confidence 4454322 3452 1222 6667888872 2222333444433 3555555555433221
Q ss_pred cCceeecCCCCCccccccCHHHHHHHHHC
Q 011745 412 EKKMAFFDPSRAKDFLFISGTKMRTFARS 440 (478)
Q Consensus 412 ~~~~~~~~p~~~~~~~~iSGT~vR~~L~~ 440 (478)
++-..+|.|++|+.+.+
T Consensus 128 ------------~~~~~~SSt~Ir~~~~~ 144 (153)
T PRK00777 128 ------------EDGKPISSTRIRRGEID 144 (153)
T ss_pred ------------CCCCeeeHHHHHHhhhc
Confidence 11236999999976643
No 45
>PRK13671 hypothetical protein; Provisional
Probab=93.27 E-value=0.48 Score=48.96 Aligned_cols=94 Identities=19% Similarity=0.317 Sum_probs=57.0
Q ss_pred eEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC---CCCChHHHHHHHHHHHHcCCCCCCceEEEe
Q 011745 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA---DDVPLDVRMEQHSKVLEDGVLDPETTIVSI 333 (478)
Q Consensus 257 ~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~---~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~i 333 (478)
.|+| +-||+|.||.++.+.+.+ +.+ .+.+++-|-...... .-++.+.|.+.-+ ..| -| .|+ =
T Consensus 4 GIIa--eFNP~H~GHl~~~~~a~~---~~~--~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~---~~G---~D-LVi-E 68 (298)
T PRK13671 4 GIIA--EYNPFHNGHIYQINYIKN---KFP--NEKIIVILSGKYTQRGEIAVASFEKRKKIAL---KYG---VD-KVI-K 68 (298)
T ss_pred eEEe--eeCCccHHHHHHHHHHHH---hcC--CCEEEEEECcCCCCCCCCCCCCHHHHHHHHH---HcC---CC-EEE-e
Confidence 4777 999999999999876643 222 244444355444444 4458888887433 222 34 233 3
Q ss_pred cC------CCcccCChhHHHHHHHHHHhcCCceeeecCCCCCC
Q 011745 334 FP------SPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGM 370 (478)
Q Consensus 334 lP------~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGv 370 (478)
+| .+-.||---=.++ ..+||+++.+|-++..+
T Consensus 69 LP~~~a~~sAe~FA~gaV~lL-----~~lgvd~l~FGsE~~d~ 106 (298)
T PRK13671 69 LPFEYATQAAHIFAKGAIKKL-----NKEKIDKLIFGSESNDI 106 (298)
T ss_pred ccHHHHhhchHHHHHHHHHHH-----HHcCCCEEEECCCCCCH
Confidence 45 2233332222333 56799999999999875
No 46
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.54 E-value=3.3 Score=44.26 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=36.7
Q ss_pred eEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC------------CCCCChHHHHHHHHHHHH
Q 011745 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK------------ADDVPLDVRMEQHSKVLE 320 (478)
Q Consensus 257 ~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK------------~~Di~~~~Rvr~y~~ll~ 320 (478)
..|.+=+-+|+|.||..|++.|.+ .. +.+.+ +||... ..-++.+.|++-.+..+.
T Consensus 54 ~~v~~G~FdP~H~GH~~lI~~A~~----~~---d~l~v--~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~ 120 (399)
T PRK08099 54 IGVVFGKFYPLHTGHIYLIQRACS----QV---DELHI--IICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFK 120 (399)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHH----HC---CeeEE--EEEccCCcchhhcccccccCCCCHHHHHHHHHHHhC
Confidence 445555999999999999976643 31 33333 223222 345788999998887775
No 47
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=92.24 E-value=0.39 Score=44.79 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=63.2
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcccc------CCCCCCCCChHHHHHHHHHHHHcCCCCCCce
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG------GFTKADDVPLDVRMEQHSKVLEDGVLDPETT 329 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Plv------G~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~ 329 (478)
..|++.=.-+=+|+||..|++.+.+.|.+.+..-.++...|-. +....--.+.+-|.+.++.+- -+ .
T Consensus 6 ~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~G------vd-~ 78 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLG------VD-Y 78 (157)
T ss_dssp -EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTT------ES-E
T ss_pred CcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcC------CC-E
Confidence 4566666888999999999999988887765433345554432 222233467778888666432 23 3
Q ss_pred EEEecCCCcccC-ChhHHHHHHHHHHhcCCceeeecCCCC
Q 011745 330 IVSIFPSPMHYA-GPTEVQWHAKARINAGANFYIVGRDPA 368 (478)
Q Consensus 330 ~l~ilP~~mryA-GPREAllHAivRkNyGcTHfIVGRDHA 368 (478)
++ ++|....++ =.-|.-++-++.++++|.+++||-|+.
T Consensus 79 ~~-~~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~Dfr 117 (157)
T PF06574_consen 79 VI-VIPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFR 117 (157)
T ss_dssp EE-EE-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-E
T ss_pred EE-EecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCcc
Confidence 33 667654333 233677888899999999999999964
No 48
>PLN02388 phosphopantetheine adenylyltransferase
Probab=91.65 E-value=1.4 Score=42.41 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=61.3
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC-CC-CCChHHHHHHHHHHHHcCCCCCCceEEEe
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK-AD-DVPLDVRMEQHSKVLEDGVLDPETTIVSI 333 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK-~~-Di~~~~Rvr~y~~ll~~~y~p~~~~~l~i 333 (478)
..|++.=|-+.+|+||..|++.|.+.+.+.. .-++==+|+....+ +. -.+.+.|++..+.++. -+.++. .+.+
T Consensus 20 ~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~v--vIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~--~~~p~~-~~~i 94 (177)
T PLN02388 20 GAVVLGGTFDRLHDGHRLFLKAAAELARDRI--VIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIK--SIKPEL-VVQA 94 (177)
T ss_pred CeEEEEecCCccCHHHHHHHHHHHHhhhcCE--EEecCCChhhcccCCCcccCCHHHHHHHHHHHHH--HcCCCc-eEEE
Confidence 5566666999999999999987765442210 00111133321111 22 3478999999999997 344553 3457
Q ss_pred cCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCC
Q 011745 334 FPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGM 370 (478)
Q Consensus 334 lP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGv 370 (478)
.|..=.|+.. +. .-..+.+||..+...-
T Consensus 95 ~~i~D~~Gpt-------~~--~~~~d~LVVS~ET~~g 122 (177)
T PLN02388 95 EPIIDPYGPS-------IV--DENLEAIVVSKETLPG 122 (177)
T ss_pred EEecCCCCCc-------cc--CCCCCEEEEcHhHhhh
Confidence 8877776644 11 2345678888886543
No 49
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=91.61 E-value=3 Score=38.14 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=54.5
Q ss_pred cCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC---CCCChHHHHHHHHHHHHcCCCCCCce
Q 011745 253 RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA---DDVPLDVRMEQHSKVLEDGVLDPETT 329 (478)
Q Consensus 253 ~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~---~Di~~~~Rvr~y~~ll~~~y~p~~~~ 329 (478)
++=+.|++.=+-+-+|+||..+++.|.+.+... ..++--.|.+-..|+ --.+.+-|++-.+++- +. |.+
T Consensus 9 ~~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~---~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~---~V--D~v 80 (144)
T TIGR02199 9 RGKKIVFTNGCFDILHAGHVSYLQQARALGDRL---VVGVNSDASVKRLKGETRPINPEEDRAEVLAALS---SV--DYV 80 (144)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHhCCcc---EEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcC---CC--CEE
Confidence 344667776789999999999998764432111 112323343221121 1456688888666441 11 223
Q ss_pred EEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCC
Q 011745 330 IVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (478)
Q Consensus 330 ~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAG 369 (478)
++ ++ . --|.+-+ +.+++.++++|-|+..
T Consensus 81 i~--f~-~---~~~~~fi------~~l~~~~vv~G~d~~~ 108 (144)
T TIGR02199 81 VI--FD-E---DTPEELI------GELKPDILVKGGDYKV 108 (144)
T ss_pred EE--CC-C---CCHHHHH------HHhCCCEEEECCCCCC
Confidence 32 32 1 1343332 3699999999998754
No 50
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=89.74 E-value=0.78 Score=35.48 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=35.0
Q ss_pred eccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcc--ccCCCCC-CCCChHHHHHHHHHHHH
Q 011745 261 FQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP--LGGFTKA-DDVPLDVRMEQHSKVLE 320 (478)
Q Consensus 261 FQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~P--lvG~tK~-~Di~~~~Rvr~y~~ll~ 320 (478)
+=+-||+|.||.++++.+. +.+. ...+++.+ .....|. .-.+.+.|.+..+.+..
T Consensus 5 ~G~Fdp~H~GH~~~l~~a~----~~~~-~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~ 62 (66)
T TIGR00125 5 VGTFDPFHLGHLDLLERAK----ELFD-ELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKY 62 (66)
T ss_pred cCccCCCCHHHHHHHHHHH----HhCC-EEEEEECchHhccccCCCCCCCHHHHHHHHHHhcc
Confidence 3488999999999987653 4431 12344432 2222333 56899999998876653
No 51
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=88.77 E-value=2.1 Score=44.42 Aligned_cols=191 Identities=17% Similarity=0.226 Sum_probs=108.1
Q ss_pred hcccCCcEEE---eeeEEEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCC
Q 011745 211 VITPAGNWLV---GGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGY 287 (478)
Q Consensus 211 ~~~~~g~~~v---gG~v~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~ 287 (478)
++...|=|-| .+-+.+++.-. ..|..|..+-++.|.. .+.+.+||. -+||.--||.||+.+|. +.
T Consensus 104 lFk~~GF~~i~~~~~~ivlmENs~--trl~~y~~~L~k~r~~--gkkIgaIVM--NANPFTLGH~YLVEqAa----aq-- 171 (352)
T COG3053 104 LFKQCGFSEIASAENVIVLMENSA--TRLKDYLSSLKKLRHP--GKKIGAIVM--NANPFTLGHRYLVEQAA----AQ-- 171 (352)
T ss_pred HHHhCCceEeeccCceEEEeecCc--hhHHHHHHHHHHhccC--CCeeEEEEE--eCCCccchhHHHHHHHH----hh--
Confidence 3434554444 34456665222 2455555555554443 456677888 99999999999986542 22
Q ss_pred CCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCc------eEE--EecCCCcccCChhH-----------HHH
Q 011745 288 KNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPET------TIV--SIFPSPMHYAGPTE-----------VQW 348 (478)
Q Consensus 288 ~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~------~~l--~ilP~~mryAGPRE-----------All 348 (478)
||-|=| .+=......+|++.|++-.+.=+. +++.=+ .++ +.||.- |----+ .+|
T Consensus 172 -cDwlHL--FvV~eD~S~f~y~~R~~Lv~~G~~--~l~Nvt~HsgsdYiISrATFP~Y--FiKeq~vv~~s~t~iDl~iF 244 (352)
T COG3053 172 -CDWLHL--FVVKEDSSLFPYEDRLDLVKKGTA--DLPNVTVHSGSDYIISRATFPAY--FIKEQSVVNDSQTEIDLKIF 244 (352)
T ss_pred -CCEEEE--EEEecccccCCHHHHHHHHHHhhc--cCCceEEecCCCeEEEecccchh--hhhhHHHHHHHHHHHHHHHH
Confidence 454333 333456678999999995554443 344311 111 234421 111111 456
Q ss_pred HHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhc-CCCcceeeEeeeEEEecccCceeecCCCCCcccc
Q 011745 349 HAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAL-GLEKLNILPFRVAAYDTVEKKMAFFDPSRAKDFL 427 (478)
Q Consensus 349 HAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~-~~~~i~i~~f~~~~Y~~~~~~~~~~~p~~~~~~~ 427 (478)
.--+++.+|.||=.||-++--.=. ..|.. +.++++.... .-+.|+++..+..-|. -.
T Consensus 245 r~~iA~aLgIThRfVG~EP~c~vT-----~~YNq-~M~~~L~~~~~~~p~I~vvei~Rk~~~----------------~~ 302 (352)
T COG3053 245 RKYIAPALGITHRFVGTEPFCRVT-----AIYNQ-QMRYWLEDPTISAPPIEVVEIERKKYQ----------------EM 302 (352)
T ss_pred HHHHHHHhCcceeeecCCCCcHHH-----HHHHH-HHHHHHhccCCCCCceEEEEeehhhhc----------------CC
Confidence 666888999999999998654321 34432 2334443321 1123666665322221 22
Q ss_pred ccCHHHHHHHHHCCC
Q 011745 428 FISGTKMRTFARSGE 442 (478)
Q Consensus 428 ~iSGT~vR~~L~~G~ 442 (478)
-||.+.||++|.++.
T Consensus 303 ~ISAS~VR~~l~~~~ 317 (352)
T COG3053 303 PISASRVRQLLAKND 317 (352)
T ss_pred cccHHHHHHHHHhCC
Confidence 599999999999874
No 52
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=87.12 E-value=6.1 Score=35.20 Aligned_cols=90 Identities=16% Similarity=0.249 Sum_probs=50.0
Q ss_pred eEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccc--c-CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEe
Q 011745 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL--G-GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSI 333 (478)
Q Consensus 257 ~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Pl--v-G~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~i 333 (478)
.|++.=+-||+|+||..+++.|. +.+ +...+.+++- . ..++.--.+.+-|++..+.+ . +. +.+++
T Consensus 3 ~v~~~G~FD~~H~GH~~ll~~a~----~~~-~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~-~--~v--d~v~~-- 70 (136)
T cd02170 3 RVYAAGTFDIIHPGHIRFLEEAK----KLG-DYLIVGVARDETVAKIKRRPILPEEQRAEVVEAL-K--YV--DEVIL-- 70 (136)
T ss_pred EEEEcCccCCCCHHHHHHHHHHH----HhC-CEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcC-C--Cc--CEEEE--
Confidence 45555588999999999987654 333 0011222211 1 11233556789999977753 1 22 21221
Q ss_pred cCCCcccCChhHHHHHHHHHHhcCCceeeecCCCC
Q 011745 334 FPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (478)
Q Consensus 334 lP~~mryAGPREAllHAivRkNyGcTHfIVGRDHA 368 (478)
. -|.+. .+.+ .+ +.+..+|+|-|+-
T Consensus 71 ~-------~~~~~-~~~l-~~-~~~~~vv~G~d~~ 95 (136)
T cd02170 71 G-------HPWSY-FKPL-EE-LKPDVIVLGDDQK 95 (136)
T ss_pred C-------CCCCH-hHHH-HH-HCCCEEEECCCCC
Confidence 1 14443 3344 33 5578999999873
No 53
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=86.64 E-value=2.8 Score=38.65 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=42.6
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEE--ccccCCCC-CCC-CChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLL--HPLGGFTK-ADD-VPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPM 338 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL--~PlvG~tK-~~D-i~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~m 338 (478)
|-||+|.||..|++.|.+.+- +...+.+ .++.-.++ +.. .+.+.|++..+.++. .+-|. .-+.+.|..=
T Consensus 7 tFD~lH~GH~~Ll~~a~~~~~----d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~-~~~~~--~~~~i~~i~d 79 (143)
T cd02164 7 TFDRLHDGHKILLSVAFLLAG----EKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLV-DLKPT--LKYEIVPIDD 79 (143)
T ss_pred cCCCCCHHHHHHHHHHHHHhc----CCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHH-hcCCC--ceEEEEEccC
Confidence 899999999999887654321 1111111 22111111 223 499999999999996 34443 2344667655
Q ss_pred ccCCh
Q 011745 339 HYAGP 343 (478)
Q Consensus 339 ryAGP 343 (478)
.| ||
T Consensus 80 ~~-Gp 83 (143)
T cd02164 80 PY-GP 83 (143)
T ss_pred CC-CC
Confidence 54 55
No 54
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=86.44 E-value=2.7 Score=44.56 Aligned_cols=183 Identities=19% Similarity=0.187 Sum_probs=92.0
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCC---CCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKAD---DVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~---Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
-=||.|+||+++++.|.+ +. +++..+.---+-.+.-| -++...|.+ - .+.. . +-+ ++|++.-
T Consensus 9 eyNPfHnGH~y~i~~Ar~---~~--~~d~~i~~msgdf~qRgepai~~k~~r~~--~-aL~~-----g-~D~-VIelP~~ 73 (358)
T COG1323 9 EYNPFHNGHQYHINKARE---EF--KGDEIIAVMSGDFTQRGEPAIGHKWERKK--M-ALEG-----G-ADL-VIELPLE 73 (358)
T ss_pred ecCcccccHHHHHHHHHH---hc--cCCceEEeeecchhhcCCCccccHHHHHh--h-hhhc-----C-ceE-EEEcceE
Confidence 579999999999977643 12 23332221111122222 234444433 2 2221 1 112 4454444
Q ss_pred cCC---hhHHHHHHHHHHhcCCceeeecCCCCCCCCC--------------------CCCCCCCCCchhhHHHHhhcCC-
Q 011745 340 YAG---PTEVQWHAKARINAGANFYIVGRDPAGMGHP--------------------TEKRDLYDPDHGKKVLSMALGL- 395 (478)
Q Consensus 340 yAG---PREAllHAivRkNyGcTHfIVGRDHAGvG~~--------------------~~~~~~Y~~~~aq~i~~~~~~~- 395 (478)
|+| |-=|.-...+-.+.||+.+.+|-.+-|+-.. .-+..+=-|...+.++..+.+-
T Consensus 74 ~s~q~a~~fa~~av~il~~l~~~~i~fgse~~~i~~~~~~a~~~~~~~~~~~~~i~~~~~~g~s~p~a~~~~~~~~~~~~ 153 (358)
T COG1323 74 RSGQGAPYFATRAVRILNALGGDDIAFGSPPMGIMGLGQYAECLAEMFRELDAIIKERLYNGKSYPKAISYANKGYRGSV 153 (358)
T ss_pred EecCCCchhhHHHHHHHHhcCCCeEEEeCCCCchHHHHHHHHHHHhhHHHHhhhhHHhhhcccccHHHHHHHHHHhcccc
Confidence 443 3334555677789999999999998776420 0011111222334444444220
Q ss_pred --------C---c------ceeeEeeeEEEecccCceeecC-CCCCccccccCHHHHHHHHHCCC-CCCCCCCchhHHHH
Q 011745 396 --------E---K------LNILPFRVAAYDTVEKKMAFFD-PSRAKDFLFISGTKMRTFARSGE-NPPDGFMCPGGWKV 456 (478)
Q Consensus 396 --------~---~------i~i~~f~~~~Y~~~~~~~~~~~-p~~~~~~~~iSGT~vR~~L~~G~-~pP~~F~rPeV~~i 456 (478)
. | +..+-...+.||-+...-.+.+ .-..+..-..|+|.+|+.+..|. .-=.||.++.++++
T Consensus 154 ~~~~~~~~N~ILg~~y~~a~~~~~~~i~~~~i~R~~~~~~~~~~~e~~~~~aSaT~IR~~i~~~~~~~~~~~vP~~t~~~ 233 (358)
T COG1323 154 EKLDLDKPNNILGLEYVKAIYVIGYSIAAYTIKREGADYHDKFLFEERLEGASATAIRKAIFSGDLERIANMVPKETLEI 233 (358)
T ss_pred eeeecCCcchhhHHHHHHHHhhccCCcchhhhhccCCCcccchhhhhcccccchHHHHHHHhcchHHHHHhhCCHHHHHH
Confidence 0 0 0000112223333322211111 00111235789999999999987 44567888999999
Q ss_pred HHHH
Q 011745 457 LVQY 460 (478)
Q Consensus 457 L~~~ 460 (478)
|.+.
T Consensus 234 l~~~ 237 (358)
T COG1323 234 LSSK 237 (358)
T ss_pred HHhc
Confidence 9864
No 55
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=81.63 E-value=3.3 Score=42.95 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=37.1
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcccc--CC-CCCCCCChHHHHHHHHHHHH
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG--GF-TKADDVPLDVRMEQHSKVLE 320 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Plv--G~-tK~~Di~~~~Rvr~y~~ll~ 320 (478)
|-||+|.||..+++.|. +. ++-+++-|-. -. ++...++.+.|++-.+..+.
T Consensus 9 sFdP~H~GHl~ii~~a~----~~---~d~v~v~~~~~~~~~~~~~~~~~~~R~~~l~~~~~ 62 (325)
T TIGR01526 9 KFYPLHTGHIYLIYEAF----SK---VDELHIVVGSLFYDSKAKRPPPVQDRLRWLREIFK 62 (325)
T ss_pred ccCCCCHHHHHHHHHHH----HH---CCEEEEEECCCCcCccCCCCCCHHHHHHHHHHHhc
Confidence 89999999999987654 33 2556553432 11 45677899999999988875
No 56
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=80.66 E-value=7.1 Score=35.76 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=52.7
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC-CCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK-~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~il 334 (478)
..|++.=+-+.+|+||..+++.|.+.+..+ ..++.-++.....+ .--.+.+-|++..+.+ ++ =+ .++ ++
T Consensus 5 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~---vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~l---g~--VD-~vi-~~ 74 (144)
T cd02172 5 TVVLCHGVFDLLHPGHVRHLQAARSLGDIL---VVSLTSDRYVNKGPGRPIFPEDLRAEVLAAL---GF--VD-YVV-LF 74 (144)
T ss_pred EEEEEecccCCCCHHHHHHHHHHHHhCCeE---EEEEeChHHhccCCCCCCCCHHHHHHHHHcc---CC--cc-EEE-EC
Confidence 456766689999999999998765422111 01122122222112 2235678888865532 11 22 333 44
Q ss_pred CCCcccCChhHHHHHHHHHHhcCCceeeecCCCCC
Q 011745 335 PSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (478)
Q Consensus 335 P~~mryAGPREAllHAivRkNyGcTHfIVGRDHAG 369 (478)
|. --|.| .+. .+++.++++|-|+..
T Consensus 75 ~~----~~~~~-fi~-----~l~~~~vv~G~d~~f 99 (144)
T cd02172 75 DN----PTALE-IID-----ALQPNIYVKGGDYEN 99 (144)
T ss_pred CC----CCHHH-HHH-----HhCCCEEEECCCccc
Confidence 52 23444 322 599999999999863
No 57
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=79.04 E-value=3.8 Score=36.27 Aligned_cols=86 Identities=17% Similarity=0.243 Sum_probs=46.7
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEc--cccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLH--PLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~--PlvG-~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
+-+++|+||..+++.|. +.+.. ..+.++ |+.- ..+.--.+.+.|++.++.+- |. + .+ +|.
T Consensus 6 ~FDg~H~GH~~~l~~a~----~~~~~-~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~---~V--d-~v---i~~--- 68 (125)
T TIGR01518 6 TFDLLHWGHINLLERAK----QLGDY-LIVALSTDEFNLQKQKKAYHSYEHRKLILETIR---YV--D-LV---IPE--- 68 (125)
T ss_pred eeCCCCHHHHHHHHHHH----HcCCE-EEEEEechHHHhhcCCCCCCCHHHHHHHHHcCC---Cc--c-EE---ecC---
Confidence 67899999999998664 33311 122222 2211 11222356688877666431 11 2 11 231
Q ss_pred cCChhHHHHHHHHHHhcCCceeeecCCCCC
Q 011745 340 YAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (478)
Q Consensus 340 yAGPREAllHAivRkNyGcTHfIVGRDHAG 369 (478)
. |.|.-.+- + +.+++.++++|-|+.|
T Consensus 69 -~-~~~~f~~~-l-~~~~~~~vv~G~D~~g 94 (125)
T TIGR01518 69 -K-SWEQKKQD-I-IDFNIDVFVMGDDWEG 94 (125)
T ss_pred -C-CccchHHH-H-HHcCCCEEEECCCccc
Confidence 1 22222222 3 4799999999999853
No 58
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=77.97 E-value=4.1 Score=35.63 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=30.8
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCC-C--CCCCChHHHHHHHHHHHH
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT-K--ADDVPLDVRMEQHSKVLE 320 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~t-K--~~Di~~~~Rvr~y~~ll~ 320 (478)
|-||+|.||..+++.|. +.+..+-.+++ |..... | ..-++.+.|++-.+.+..
T Consensus 5 sFdP~H~GH~~~l~~a~----~~~~~~~vi~v-~~~~~~~k~~~~~~~~~~R~~ml~~~~~ 60 (157)
T PF01467_consen 5 SFDPPHNGHLNLLREAR----ELFDEDLVIVV-PSDNSPHKDKKPIFSFEERLEMLRAAFK 60 (157)
T ss_dssp --TT--HHHHHHHHHHH----HHSSESEEEEE-EEEHHCHSTTSSSSTHHHHHHHHHHHHT
T ss_pred EcCcccHHHHHHHHHHH----Hhccccccccc-cccccccccccccCcHHHHHHHHHHHHh
Confidence 78999999999987654 44311112333 322222 2 256899999999998885
No 59
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=77.03 E-value=4.5 Score=38.79 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=37.2
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCC-----CCCCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF-----TKADDVPLDVRMEQHSKVLEDGVLDPETTIV 331 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~-----tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l 331 (478)
.-.|+|.||-++++.|++ . ++-|.| ++|- |..+-+.+--|+-..+..+.+.-.+. |+.+
T Consensus 11 RFqP~H~GHl~vi~~al~----~---vDeliI--~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~-r~~~ 74 (172)
T COG1056 11 RFQPLHTGHLYVIKRALS----K---VDELII--VIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL-RVYL 74 (172)
T ss_pred ccCCccHhHHHHHHHHHH----h---CCEEEE--EEccCcccccccCCCCccchhHHHHHHHHhcCCCc-eEEE
Confidence 455999999999986543 3 255665 6675 33344677778777776664334443 4444
No 60
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=69.52 E-value=3 Score=42.91 Aligned_cols=62 Identities=18% Similarity=0.339 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhcC-CCeEEee-cc-CCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCC
Q 011745 241 LSPQQLRKEFDNRQ-ADAIFAF-QL-RNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVP 307 (478)
Q Consensus 241 ~tP~E~R~~f~~~g-w~~VvaF-QT-RNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~ 307 (478)
.|++|+|+...... -.+-+|| =| -| +|+||..|++.+.+.+ +. ....++.||.- ...++|++
T Consensus 5 ~~~~~l~~~~~~~~~~g~~ig~VpTmG~-LH~GH~~LI~~a~~~a-~~--vVvTffvnP~q-f~~~ed~~ 69 (282)
T TIGR00018 5 ETIPLLRQYIRQLRMEGKTVGFVPTMGN-LHDGHMSLIDRAVAEN-DV--VVVSIFVNPMQ-FGPNEDLE 69 (282)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEECCCc-ccHHHHHHHHHHHHhC-Ce--EEEEecCChHH-hCCccccc
Confidence 47889998875311 1123333 23 44 9999999998876533 11 12347788875 44445533
No 61
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=64.90 E-value=9.9 Score=40.70 Aligned_cols=181 Identities=21% Similarity=0.266 Sum_probs=27.3
Q ss_pred EEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCC---CCCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 011745 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT---KADDVPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (478)
Q Consensus 258 VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~t---K~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~il 334 (478)
|+| ==||+|+||.|+++.+.+ ..+ ++.+++---+-.+ .|--++..+|.++ .+..| -| .|+ =+
T Consensus 6 IIa--EYNPFHnGH~y~i~~~k~---~~~--ad~ii~vMSGnFvQRGEPAi~dKw~RA~~---AL~~G---aD-LVi-EL 70 (388)
T PF05636_consen 6 IIA--EYNPFHNGHLYQIEQAKK---ITG--ADVIIAVMSGNFVQRGEPAIIDKWTRAEM---ALKNG---AD-LVI-EL 70 (388)
T ss_dssp -E-----TT--HHHHHHHHHHH------T--SSEEEEEE--TTSBTSSB-SS-HHHHHHH---HHHHT----S-EEE-E-
T ss_pred eEE--eECCccHHHHHHHHHHhc---cCC--CCEEEEEECCCcccCCCeeeCCHHHHHHH---HHHcC---CC-EEE-EC
Confidence 444 579999999999976643 122 3433332222333 3444788888774 33344 24 333 34
Q ss_pred C------CCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCC-----------C----------CCCCCchhhH
Q 011745 335 P------SPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEK-----------R----------DLYDPDHGKK 387 (478)
Q Consensus 335 P------~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~-----------~----------~~Y~~~~aq~ 387 (478)
| .+-.||---=.++ ...||+++..|-++..+..-..- + .-|..- -+.
T Consensus 71 P~~~a~qsA~~FA~gaV~lL-----~~lgvd~l~FGsE~~~~~~l~~~a~~~~~~~~~~~~~l~~~L~~G~Sy~~A-~~~ 144 (388)
T PF05636_consen 71 PVVYALQSAEYFARGAVSLL-----NALGVDYLSFGSESGDIEDLQKIAEILIEEPEEFKEALKEYLKKGLSYPKA-RSK 144 (388)
T ss_dssp --G-----------------------------------------------------------------------------
T ss_pred CCcccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 5 2334442222233 45789999999999776421000 0 001111 111
Q ss_pred HHHhhcCCCcceee--E--eeeEEEecccCceeec---CCC---C-Cc-----cccccCHHHHHHHH--HCCCCCCCCCC
Q 011745 388 VLSMALGLEKLNIL--P--FRVAAYDTVEKKMAFF---DPS---R-AK-----DFLFISGTKMRTFA--RSGENPPDGFM 449 (478)
Q Consensus 388 i~~~~~~~~~i~i~--~--f~~~~Y~~~~~~~~~~---~p~---~-~~-----~~~~iSGT~vR~~L--~~G~~pP~~F~ 449 (478)
.+..+.+......+ | .=..-|++......+. .+. + +. +-..-|+|.+|++| ..+..+ .-++
T Consensus 145 al~~~~~~~~~~~l~~PNniLgieY~kal~~~~~~i~p~~IkR~ga~y~d~~~~~~~aSAtaIR~~l~~~~~~~~-~~~v 223 (388)
T PF05636_consen 145 ALKELLGEEFSFILSQPNNILGIEYLKALKRLNSPIKPLTIKRIGAGYHDESLDGNFASATAIRKALSNNDLEEI-SNYV 223 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 12211111000001 1 1125688877655542 111 1 00 12466999999999 334433 5588
Q ss_pred chhHHHHHHHH
Q 011745 450 CPGGWKVLVQY 460 (478)
Q Consensus 450 rPeV~~iL~~~ 460 (478)
+++++++|.+.
T Consensus 224 P~~~~~~l~~~ 234 (388)
T PF05636_consen 224 PKSSYEILEEE 234 (388)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 88888888443
No 62
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=63.31 E-value=15 Score=31.33 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.0
Q ss_pred cCCCCchhhHHHHHHHH
Q 011745 263 LRNPIHNGHALLMNDTR 279 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~ 279 (478)
+-||+|.||..+++.+.
T Consensus 7 ~Fdp~H~GH~~l~~~a~ 23 (105)
T cd02156 7 EPGYLHIGHAKLICRAK 23 (105)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 45999999999987653
No 63
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus.
Probab=62.80 E-value=93 Score=32.13 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=81.0
Q ss_pred CCcEEEe-eeEEEecCCCCCCCcCcCCCCHHHHHHHHH-------hcCCCeEEeeccCCCCchh--hHHHHHHHHHHHHH
Q 011745 215 AGNWLVG-GDLEVLKPIKYNDGLDHYRLSPQQLRKEFD-------NRQADAIFAFQLRNPIHNG--HALLMNDTRRRLLE 284 (478)
Q Consensus 215 ~g~~~vg-G~v~~l~~~~~~d~f~~~r~tP~E~R~~f~-------~~gw~~VvaFQTRNPlHRa--He~l~r~a~~~ale 284 (478)
.|+|.|. |.......+.. +.--|+-++.|..+..+ ..+-..|++ +..|.+++ ||.|. ++..
T Consensus 120 ~g~~iv~LG~F~p~~~~d~--~p~~y~dS~~~~~~i~~aL~~f~~~~~~~cis~--~~r~~~~~sv~~~L~-----aL~~ 190 (282)
T PF12818_consen 120 PGQYIVCLGDFEPTPGPDT--PPYTYRDSGLEQNKILQALQQFYSTLESPCISG--SIRPPGPASVKEHLL-----ALCH 190 (282)
T ss_pred CCCEEEEecCCcccCCCCC--CCcccccCHHHHHHHHHHHHHHHHhcCCCcEEe--ecCCCCchhHHHHHH-----HhcC
Confidence 5666555 77666543322 12258889999887654 333456888 66777666 55553 1222
Q ss_pred cCCCCCeEEEccccCCCCCC--CCChHHHHHHHHHHHHcCCCCCC-ceEEEecCCCcc----cC--ChhHHHHHHHHHHh
Q 011745 285 MGYKNPILLLHPLGGFTKAD--DVPLDVRMEQHSKVLEDGVLDPE-TTIVSIFPSPMH----YA--GPTEVQWHAKARIN 355 (478)
Q Consensus 285 ~g~~~~~lLL~PlvG~tK~~--Di~~~~Rvr~y~~ll~~~y~p~~-~~~l~ilP~~mr----yA--GPREAllHAivRkN 355 (478)
-+ ++.+.+.-|....+.. .++.+. ..+|+.++++.+|... .+++-++...-. -+ +|+|++-- +.+.
T Consensus 191 ~~--G~~l~lS~LP~~i~~~L~~~~~~~-~~~~~~~i~~~FLNv~~~~vfl~V~n~~~~~~~~~~~~~l~~L~~--~c~~ 265 (282)
T PF12818_consen 191 PG--GARLDLSALPQEIVSQLKRSPPEN-REHNEEIIKQHFLNVYCSVVFLVVSNTPIDTNTDQGFGPLDALKR--ACRL 265 (282)
T ss_pred CC--ceEEEhhcCCHHHHHHhccCCchh-HHHHHHHHHhhhhccccceEEEEEecCCCCCcccccccHHHHHHH--HHHH
Confidence 21 2445555552111111 112222 3448888887666665 234435554442 22 57777654 3588
Q ss_pred cCCceeeecCCCCCCC
Q 011745 356 AGANFYIVGRDPAGMG 371 (478)
Q Consensus 356 yGcTHfIVGRDHAGvG 371 (478)
|||+..|+|+-....|
T Consensus 266 ~gc~~~iLG~t~~~~G 281 (282)
T PF12818_consen 266 CGCPVHILGRTCPEPG 281 (282)
T ss_pred CCCCEEEEeeeccCCC
Confidence 9999999999766554
No 64
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=60.75 E-value=15 Score=31.49 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=45.8
Q ss_pred EEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCch------hhHHHHHHHHHHHHHcCCCCCe
Q 011745 218 WLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHN------GHALLMNDTRRRLLEMGYKNPI 291 (478)
Q Consensus 218 ~~vgG~v~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHR------aHe~l~r~a~~~ale~g~~~~~ 291 (478)
+||+|+++++. ++ -+..-.+.-+.+.++|.. |+ ||.+. -.+.-|+..++.+. .||.
T Consensus 1 iYIaGPmtG~~------~~--N~~~f~~~a~~L~~~G~~-vv-----nPa~~~~~~~~~~~~ym~~~l~~L~----~cD~ 62 (92)
T PF14359_consen 1 IYIAGPMTGLP------DY--NRPAFNAAAKRLRAKGYE-VV-----NPAELGIPEGLSWEEYMRICLAMLS----DCDA 62 (92)
T ss_pred CeEeCCcCCCc------ch--HHHHHHHHHHHHHHCCCE-Ee-----CchhhCCCCCCCHHHHHHHHHHHHH----hCCE
Confidence 48999999853 12 133455666777788844 33 77776 44555666655443 3677
Q ss_pred EEEccccCCCCCCCCChHH
Q 011745 292 LLLHPLGGFTKADDVPLDV 310 (478)
Q Consensus 292 lLL~PlvG~tK~~Di~~~~ 310 (478)
+.+ +.||..+-.-..|.
T Consensus 63 i~~--l~gWe~S~GA~~E~ 79 (92)
T PF14359_consen 63 IYM--LPGWENSRGARLEH 79 (92)
T ss_pred EEE--cCCcccCcchHHHH
Confidence 777 56888877654443
No 65
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=58.18 E-value=13 Score=38.30 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHh--cCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 011745 241 LSPQQLRKEFDN--RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (478)
Q Consensus 241 ~tP~E~R~~f~~--~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~R 311 (478)
.|++|+|+.... +.-++|--+=|=.-+|-||..|++.|.+ +.......+|+||+= ....+|+...-|
T Consensus 5 ~~i~el~~~~~~~~~~~~~igfVPTMGaLHeGHlsLi~~A~~---~~d~vVVSIFVNP~Q-F~~~eD~~~YPR 73 (280)
T PF02569_consen 5 RTISELREWIRAWRKAGKTIGFVPTMGALHEGHLSLIRRARA---ENDVVVVSIFVNPTQ-FGPNEDFDKYPR 73 (280)
T ss_dssp -SHHHHHHHHHHHHHTTSSEEEEEE-SS--HHHHHHHHHHHH---HSSEEEEEE---GGG-SSTTSHTTTS--
T ss_pred ccHHHHHHHHHHHHHcCCeEEEECCCchhhHHHHHHHHHHHh---CCCEEEEEECcCccc-CCCcchhhhCCC
Confidence 478899988863 2335555555999999999999987753 332223458899984 455567665555
No 66
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=53.24 E-value=8.6 Score=39.42 Aligned_cols=107 Identities=17% Similarity=0.240 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHh---cCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCC-----hHHHH
Q 011745 241 LSPQQLRKEFDN---RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVP-----LDVRM 312 (478)
Q Consensus 241 ~tP~E~R~~f~~---~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~-----~~~Rv 312 (478)
.|++|+|+.... .| ++|...=|=.=+|+||..|++.+.+.+ .. ....++.||.- ...++|++ .+-+.
T Consensus 5 ~~~~~~~~~~~~~~~~~-~~ig~V~TmG~LH~GH~~LI~~a~~~a-~~--vVvtf~~nP~q-f~~~ed~~~y~~t~e~d~ 79 (277)
T cd00560 5 TTIAELRAWLRNWRAQG-KTIGFVPTMGALHEGHLSLVRRARAEN-DV--VVVSIFVNPLQ-FGPNEDLDRYPRTLEADL 79 (277)
T ss_pred ccHHHHHHHHHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHhC-CE--EEEEecCChhh-cCCcccccccCCCHHHHH
Confidence 478888888753 23 334333343339999999998876533 11 12357788885 44445533 23344
Q ss_pred HHHHHHHHcCCCCCCceEEEecC-CCcccCChhHHHHHHHHHHhcCCceeeecC
Q 011745 313 EQHSKVLEDGVLDPETTIVSIFP-SPMHYAGPTEVQWHAKARINAGANFYIVGR 365 (478)
Q Consensus 313 r~y~~ll~~~y~p~~~~~l~ilP-~~mryAGPREAllHAivRkNyGcTHfIVGR 365 (478)
+-.+.+ | -| ++ ..| .+-.|+.. .. .++-...++.+.++|.
T Consensus 80 ~ll~~~---G---vD-~v--F~p~~~~m~p~~---f~-~~~v~~~~~~~il~G~ 120 (277)
T cd00560 80 ALLEEA---G---VD-LL--FAPSVEEMYPEG---LF-STFVDVGPLSEVLEGA 120 (277)
T ss_pred HHHHHC---C---CC-EE--ECCCHHHcCCCC---Cc-eEEEecCCCceEEecC
Confidence 433221 1 12 11 334 22333322 01 2333446889999998
No 67
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=52.00 E-value=9.3 Score=39.21 Aligned_cols=61 Identities=18% Similarity=0.353 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHh---cCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCC
Q 011745 241 LSPQQLRKEFDN---RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDV 306 (478)
Q Consensus 241 ~tP~E~R~~f~~---~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di 306 (478)
.|++|+|+.+.. .|-+-.++.---| +|+||..|++.+.+.+ .. ....++.||.- ...++|+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~i~~v~tmG~-lH~GH~~Li~~a~~~a-~~--vVvTf~~~P~q-f~~~~~~ 68 (281)
T PRK00380 5 TTIAELRAALRRWRREGKRIGLVPTMGA-LHEGHLSLVREARAEA-DI--VVVSIFVNPLQ-FGPNEDL 68 (281)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEEccCc-eeHHHHHHHHHHHHhC-CE--EEEeCCCCHHH-hCCCccc
Confidence 478888888753 2322222222344 9999999998776533 11 12236667764 2334453
No 68
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=51.15 E-value=15 Score=40.82 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 011745 241 LSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (478)
Q Consensus 241 ~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~R 311 (478)
.|++|+|+......-++|.-+=|=.-+|.||..|++.|.+ +.......+|+||+= ...++|+...-|
T Consensus 5 ~~~~~l~~~~~~~~~~~ig~VPTMG~LH~GHlsLi~~A~~---~~d~vVvSIFVNP~Q-F~~~eD~~~YPr 71 (512)
T PRK13477 5 RTVAGLRAWLRQQRSETIGFVPTMGALHQGHLSLIRRARQ---ENDVVLVSIFVNPLQ-FGPNEDLERYPR 71 (512)
T ss_pred ecHHHHHHHHHHhcCCcEEEECCCcchhHHHHHHHHHHHH---hCCEEEEEEccCccc-CCCchhhhhCCC
Confidence 4789999998752223565566999999999999987654 221112357777773 344555544333
No 69
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=49.84 E-value=26 Score=36.22 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHH---hcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 011745 240 RLSPQQLRKEFD---NRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (478)
Q Consensus 240 r~tP~E~R~~f~---~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~R 311 (478)
-.|.+|+|+..+ +.| ++|.-.=|=+=+|.||..|++.|.+ +.......+|+||+ -..-.+|++..-|
T Consensus 4 i~ti~~lr~~~~~~r~~g-k~Vg~VPTMG~LH~GHlsLVr~A~~---~~d~VVVSIFVNP~-QFg~~EDl~~YPR 73 (285)
T COG0414 4 ITTIAELRQAIKALRKEG-KRVGLVPTMGNLHEGHLSLVRRAKK---ENDVVVVSIFVNPL-QFGPNEDLDRYPR 73 (285)
T ss_pred eehHHHHHHHHHHHHHcC-CEEEEEcCCcccchHHHHHHHHHhh---cCCeEEEEEEeChh-hcCCchhhhhCCC
Confidence 358889987765 222 4455555999999999999987643 33222345788887 2334556555444
No 70
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=49.54 E-value=8.3 Score=34.30 Aligned_cols=38 Identities=5% Similarity=0.089 Sum_probs=29.9
Q ss_pred ceeeEeeeEEEecccCceee-------cCCC-CCccccccCHHHHH
Q 011745 398 LNILPFRVAAYDTVEKKMAF-------FDPS-RAKDFLFISGTKMR 435 (478)
Q Consensus 398 i~i~~f~~~~Y~~~~~~~~~-------~~p~-~~~~~~~iSGT~vR 435 (478)
|.|...+..+||..|+...+ .||+ +..+...++|.+++
T Consensus 62 L~i~~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~i~~G~El~ 107 (114)
T PRK03681 62 LHLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGDMLRIVADDGLQ 107 (114)
T ss_pred EEEEeeCcEEEcccCCCeeecCCccCCcCcCcCCCCcEEccCCeEE
Confidence 77777888999999998864 1998 76677788887654
No 71
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=48.81 E-value=13 Score=33.10 Aligned_cols=38 Identities=16% Similarity=-0.006 Sum_probs=29.3
Q ss_pred ceeeEeeeEEEecccCceeec------CCC-CCccccccCHHHHH
Q 011745 398 LNILPFRVAAYDTVEKKMAFF------DPS-RAKDFLFISGTKMR 435 (478)
Q Consensus 398 i~i~~f~~~~Y~~~~~~~~~~------~p~-~~~~~~~iSGT~vR 435 (478)
|.|...+..+||+.|+...+. ||. +......++|.+++
T Consensus 62 L~I~~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~El~ 106 (115)
T TIGR00100 62 LNIEDEPVECECEDCSEEVSPEIDLYRCPKCHGIMLQVRAGKELN 106 (115)
T ss_pred EEEEeeCcEEEcccCCCEEecCCcCccCcCCcCCCcEEecCCeEE
Confidence 666677789999999987752 998 66677788887654
No 72
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=46.29 E-value=15 Score=32.63 Aligned_cols=38 Identities=13% Similarity=0.048 Sum_probs=29.6
Q ss_pred ceeeEeeeEEEecccCceee------cCCC-CCccccccCHHHHH
Q 011745 398 LNILPFRVAAYDTVEKKMAF------FDPS-RAKDFLFISGTKMR 435 (478)
Q Consensus 398 i~i~~f~~~~Y~~~~~~~~~------~~p~-~~~~~~~iSGT~vR 435 (478)
+.|...+..++|..|+...+ .||+ +..+...++|.+++
T Consensus 62 L~I~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~El~ 106 (113)
T PRK12380 62 LHIVYKPAQAWCWDCSQVVEIHQHDAQCPHCHGERLRVDTGDSLI 106 (113)
T ss_pred EEEEeeCcEEEcccCCCEEecCCcCccCcCCCCCCcEEccCCeEE
Confidence 77777888999999997653 2998 76677788887653
No 73
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=44.47 E-value=21 Score=27.92 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=18.6
Q ss_pred eccCHHHHhhcCC---------CCeEEEeCCCCCEEEEEEec
Q 011745 151 LAIDDETKERIGS---------TTNVALLGPTGDLIGILRSI 183 (478)
Q Consensus 151 L~V~~e~a~~l~~---------G~~vaL~d~eG~~lAiL~V~ 183 (478)
++++++++..+.- ++.++..+++|+++|+++-.
T Consensus 4 ~~ls~~ea~~l~~Gr~l~~~~~~g~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 4 RELSAEEARDLRHGRRLPAAGPPGPVAAFAPDGRLVALLEER 45 (56)
T ss_dssp EE--HHHHHHHHTT---B-----S-EEEE-TTS-EEEEEEEE
T ss_pred eECCHHHHHHHhCCCccCCCCCCceEEEECCCCcEEEEEEcc
Confidence 4566666665533 34566678999999999644
No 74
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=44.09 E-value=2.6e+02 Score=28.29 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=64.4
Q ss_pred HHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCc
Q 011745 280 RRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359 (478)
Q Consensus 280 ~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcT 359 (478)
+.+++.| .+++++.=. ...---++.+-|.+-.+.+.+ ....+.-++..+ . . +-+|++-.+...++.||+
T Consensus 28 ~~l~~~G--v~gi~v~Gs--tGE~~~Ls~eEr~~l~~~~~~--~~~~~~pvi~gv---~-~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 28 EWLLSYG--AAALFAAGG--TGEFFSLTPDEYAQVVRAAVE--ETAGRVPVLAGA---G-Y-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred HHHHHcC--CCEEEECcC--CcCcccCCHHHHHHHHHHHHH--HhCCCCCEEEec---C-C-CHHHHHHHHHHHHHhCCC
Confidence 3455665 567876333 334455888999999998887 333332222222 1 2 779999999999999999
Q ss_pred eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEe
Q 011745 360 FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYD 409 (478)
Q Consensus 360 HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~ 409 (478)
.+++-. +||.+.....+++.|..... -.+.+.+.|.
T Consensus 97 ~v~~~p------------P~y~~~~~~~i~~~f~~v~~--~~~~pi~lYn 132 (289)
T cd00951 97 GILLLP------------PYLTEAPQEGLYAHVEAVCK--STDLGVIVYN 132 (289)
T ss_pred EEEECC------------CCCCCCCHHHHHHHHHHHHh--cCCCCEEEEe
Confidence 999822 35554445667666543211 1234445565
No 75
>PLN02660 pantoate--beta-alanine ligase
Probab=42.74 E-value=21 Score=36.87 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHh---cCCCeEEeec-cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCC
Q 011745 241 LSPQQLRKEFDN---RQADAIFAFQ-LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADD 305 (478)
Q Consensus 241 ~tP~E~R~~f~~---~gw~~VvaFQ-TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~D 305 (478)
.|++|+|+...+ .| ++ +||- |=.=+|+||..|++.+.+.+- .....++.||.- ....+|
T Consensus 4 ~~~~~lr~~~~~~~~~g-~~-igfVpTmG~LH~GH~~LI~~a~~~a~---~vVvTffvnP~q-f~~~ed 66 (284)
T PLN02660 4 RDKAAMRAWSRAQRAQG-KR-IALVPTMGYLHEGHLSLVRAARARAD---VVVVSIYVNPGQ-FAPGED 66 (284)
T ss_pred ccHHHHHHHHHHHHHcC-Ce-EEEEEcCchhhHHHHHHHHHHHHhCC---EEEEEEeCChHH-cCCccc
Confidence 478899888753 23 23 3332 433399999999987755321 113458889986 444355
No 76
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=39.11 E-value=20 Score=31.66 Aligned_cols=38 Identities=24% Similarity=0.108 Sum_probs=24.8
Q ss_pred ceeeEeeeEEEecccCceee------cCCC-CCccccccCHHHHH
Q 011745 398 LNILPFRVAAYDTVEKKMAF------FDPS-RAKDFLFISGTKMR 435 (478)
Q Consensus 398 i~i~~f~~~~Y~~~~~~~~~------~~p~-~~~~~~~iSGT~vR 435 (478)
+.|...+..++|..|+.-.+ .||+ +..+...+||.+++
T Consensus 62 L~Ie~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~el~ 106 (113)
T PF01155_consen 62 LEIEEVPARARCRDCGHEFEPDEFDFSCPRCGSPDVEIISGRELR 106 (113)
T ss_dssp EEEEEE--EEEETTTS-EEECHHCCHH-SSSSSS-EEEEESS-EE
T ss_pred EEEEecCCcEECCCCCCEEecCCCCCCCcCCcCCCcEEccCCeEE
Confidence 67777888999999998775 2998 66666778887653
No 77
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=36.40 E-value=25 Score=32.20 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=44.8
Q ss_pred hcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCeeccceeeEeccCHHHHhhcCCCCeEEE
Q 011745 90 AESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVAL 169 (478)
Q Consensus 90 a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w~wpiPItL~V~~e~a~~l~~G~~vaL 169 (478)
...+....+..++++-|-.=++.+ =||+.++|+++- .+.|.+ ++.+.-|++|..+.+
T Consensus 59 ~~kve~a~ie~~~~q~lY~dg~~~-----~FMD~etyeq~~--------------v~~~~~----~d~~~~l~eg~~v~v 115 (131)
T COG0231 59 DDKVEVAIVERKTAQYLYIDGDFY-----VFMDLETYEQYE--------------LPKDQI----GDAAKFLKEGMEVEV 115 (131)
T ss_pred CCEEEEeEEeeeeEEEEEcCCCeE-----EEccCCCceEEE--------------ecchhh----hhHHHhcCCCCEEEE
Confidence 345556677776655211112222 399999999985 233332 678888999999988
Q ss_pred eCCCCCEEEE
Q 011745 170 LGPTGDLIGI 179 (478)
Q Consensus 170 ~d~eG~~lAi 179 (478)
.-.+|+++++
T Consensus 116 ~~~~g~~i~v 125 (131)
T COG0231 116 LLYNGEPIAV 125 (131)
T ss_pred EEECCEEEEE
Confidence 7789999886
No 78
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=35.07 E-value=3.9e+02 Score=27.26 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=58.0
Q ss_pred HHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCc
Q 011745 280 RRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359 (478)
Q Consensus 280 ~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcT 359 (478)
+.+++.| ++++++.=.. ..---++.+-|.+..+.+.+ ....+.-+++.+ . .+-+|++-.+.-.+..|++
T Consensus 35 ~~l~~~G--v~Gi~~~Gst--GE~~~Lt~eEr~~~~~~~~~--~~~~~~pvi~gv--~---~~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 35 EWLAPYG--AAALFAAGGT--GEFFSLTPDEYSQVVRAAVE--TTAGRVPVIAGA--G---GGTAQAIEYAQAAERAGAD 103 (303)
T ss_pred HHHHHcC--CCEEEECcCC--cCcccCCHHHHHHHHHHHHH--HhCCCCcEEEec--C---CCHHHHHHHHHHHHHhCCC
Confidence 3445555 5678763333 24455788999999998886 333332233222 1 2678999999999999999
Q ss_pred eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhc
Q 011745 360 FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAL 393 (478)
Q Consensus 360 HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~ 393 (478)
.+++-. +||....-+.+.+.|.
T Consensus 104 av~~~p------------P~y~~~~~~~i~~~f~ 125 (303)
T PRK03620 104 GILLLP------------PYLTEAPQEGLAAHVE 125 (303)
T ss_pred EEEECC------------CCCCCCCHHHHHHHHH
Confidence 999832 2444444455666553
No 79
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=33.40 E-value=3.6e+02 Score=28.69 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=83.9
Q ss_pred eeeEEEec---CCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCC-chhhHHHHHHHHHHHHHcCCCCCeEEEcc
Q 011745 221 GGDLEVLK---PIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPI-HNGHALLMNDTRRRLLEMGYKNPILLLHP 296 (478)
Q Consensus 221 gG~v~~l~---~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPl-HRaHe~l~r~a~~~ale~g~~~~~lLL~P 296 (478)
-+.+++++ |+.|-..|+.-++-.+-+|+.+...+ +.+++ -.-+|- .---+.+-+.+ +.+.+.| .+++. .
T Consensus 93 ~~~irl~D~~~P~~~~~~f~GP~fGi~g~R~~~gv~~-rPli~-Ti~kp~~gld~~~la~~~-~~l~~gG--vD~Ik--d 165 (367)
T cd08205 93 LPGIKLVDLELPDSLLAAFPGPRFGIEGLRRLLGVHD-RPLLG-TIIKPSIGLSPEELAELA-YELALGG--IDLIK--D 165 (367)
T ss_pred CCceEEEecCCCHHHHhhCCCCCCCchhHHHHhCCCC-CCeee-eeeCCCCCCCHHHHHHHH-HHHHhcC--CCeee--c
Confidence 33466655 66677788888999999999998655 55555 124554 33344443333 3344444 33332 3
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHcCCCCC--CceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCC
Q 011745 297 LGGFTKADDVPLDVRMEQHSKVLEDGVLDP--ETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRD 366 (478)
Q Consensus 297 lvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~--~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRD 366 (478)
.......--.+.+-|++..+..++ .-.. .+..+ +++.. -+...|++-+|-..++.||+-++|---
T Consensus 166 de~~ge~~~~~~eER~~~v~~av~--~a~~~TG~~~~-y~~ni--t~~~~e~i~~a~~a~~~Gad~vmv~~~ 232 (367)
T cd08205 166 DELLADQPYAPFEERVRACMEAVR--RANEETGRKTL-YAPNI--TGDPDELRRRADRAVEAGANALLINPN 232 (367)
T ss_pred cccccCcccCCHHHHHHHHHHHHH--HHHHhhCCcce-EEEEc--CCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 444446777899999999888886 2231 12222 22211 145699999999999999999988644
No 80
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=33.33 E-value=1.9e+02 Score=30.79 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=53.5
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeE--EEcccc--C-CCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPIL--LLHPLG--G-FTKADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~l--LL~Plv--G-~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~ 330 (478)
.+|++-=+-+-+|.||..++++|. +.| +.| -+||-- - .+.+--.+.+-|++..+++- +. +.++
T Consensus 12 ~~v~~~G~FD~vH~GH~~~L~qAk----~~g---~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~---~V--D~Vv 79 (353)
T PTZ00308 12 IRVWVDGCFDMLHFGHANALRQAR----ALG---DELFVGCHSDEEIMRNKGPPVMHQEERYEALRACK---WV--DEVV 79 (353)
T ss_pred EEEEEEeecccCCHHHHHHHHHHH----HhC---CEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcC---Cc--cEEE
Confidence 567665589999999999987663 444 323 333321 0 01112677888888666442 11 2233
Q ss_pred EEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCC
Q 011745 331 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (478)
Q Consensus 331 l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHA 368 (478)
+ .+|....++ .+ +-++|.++++|-|..
T Consensus 80 ~-~~p~~~~~~---------fI-~~l~~d~vv~GdD~~ 106 (353)
T PTZ00308 80 E-GYPYTTRLE---------DL-ERLECDFVVHGDDIS 106 (353)
T ss_pred E-CCCCCchHH---------HH-HHhCCCEEEECCCCC
Confidence 2 245432221 22 779999999999976
No 81
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=32.81 E-value=72 Score=31.96 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=46.7
Q ss_pred eEEeeccCCCCchhhHHHHHHHHHHHHHcC-CCCCeEEEccccC-CCCCCCCChHHHHHHHHHHH
Q 011745 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMG-YKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVL 319 (478)
Q Consensus 257 ~VvaFQTRNPlHRaHe~l~r~a~~~ale~g-~~~~~lLL~PlvG-~tK~~Di~~~~Rvr~y~~ll 319 (478)
.++|+++-||+-..|..|+..|.+.+-+.+ +....=.+.|+.- -+|.+-+|+..|++.-|+.-
T Consensus 10 ~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt 74 (234)
T KOG3199|consen 10 VLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELAT 74 (234)
T ss_pred EEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhccccchhhhHHHHHHhhh
Confidence 468899999999999999998866553543 2223345678753 35669999999999888655
No 82
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=32.73 E-value=72 Score=39.17 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=60.6
Q ss_pred cCCCCCCCChhhhhcccccCCeecCCCCeeccceeeEeccCHHHHhhcCCCCeEEEeCC-CCCEEEEEEeccccccCHHH
Q 011745 114 ASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGP-TGDLIGILRSIEIYKHNKEE 192 (478)
Q Consensus 114 fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w~wpiPItL~V~~e~a~~l~~G~~vaL~d~-eG~~lAiL~V~eiy~~Dk~~ 192 (478)
|.+++.+++.++|.+|- |. ..-+.+.|++++.+.++.++...|+++ +|++...+.-.|+| ++
T Consensus 377 f~~yd~~~~~e~y~tv~---------~q----N~N~SV~VtDeFM~aVe~d~~w~L~~p~~gkv~ktV~AReLw----~k 439 (1220)
T PRK07562 377 FPTYDTDWDSEAYLTVS---------GQ----NSNNSVRVTDEFLRAVENDGDWNLTARTDGKVAKTLKARDLW----EK 439 (1220)
T ss_pred ccccccccccchhcccc---------cc----cccceeccCHHHHHHHHCCCCeeeeccCCCceeeEeeHHHHH----HH
Confidence 77899999999999985 22 123567899999999999999999765 68999999999999 34
Q ss_pred HHHHhhCCCCCCCcchh
Q 011745 193 RIARTWGTTAAGLPYVE 209 (478)
Q Consensus 193 ea~~vfGT~d~~HPgV~ 209 (478)
.++..|-|.| ||+.
T Consensus 440 I~~aawetGd---PgI~ 453 (1220)
T PRK07562 440 IGYAAWASAD---PGLQ 453 (1220)
T ss_pred HHHHHHHHCC---ceEE
Confidence 6777777666 6765
No 83
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=31.67 E-value=21 Score=32.24 Aligned_cols=37 Identities=14% Similarity=-0.046 Sum_probs=28.2
Q ss_pred ceeeEeeeEEEecccCce-----e--------ecCCC-CCccccccCHHHHH
Q 011745 398 LNILPFRVAAYDTVEKKM-----A--------FFDPS-RAKDFLFISGTKMR 435 (478)
Q Consensus 398 i~i~~f~~~~Y~~~~~~~-----~--------~~~p~-~~~~~~~iSGT~vR 435 (478)
|.|...+..+|| .|+.. . ..||. +..+...++|.+++
T Consensus 62 L~I~~vp~~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~~G~El~ 112 (124)
T PRK00762 62 LIVEMIPVEIEC-ECGYEGVVDEDEIDHYAAVIECPVCGNKRAHILGGRECN 112 (124)
T ss_pred EEEEecCeeEEe-eCcCcccccccchhccccCCcCcCCCCCCCEEecCCeEE
Confidence 777778889999 99977 1 23998 66677778887764
No 84
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.64 E-value=95 Score=27.05 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=29.4
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEecccc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEIY 186 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~eiy 186 (478)
+.++.++|+ +|+.||.|.|....|++.+...+++--
T Consensus 34 v~i~p~dA~~~gi~~Gd~V~v~s~~G~i~~~a~~~~~v 71 (124)
T cd02785 34 VKINPIDAAARGIAHGDLVEVYNDRGSVVCKAKVDDGI 71 (124)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCCEEEEEEEECCCc
Confidence 457777776 567999999999999999999887744
No 85
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=29.89 E-value=17 Score=32.40 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=28.6
Q ss_pred ceeeEeeeEEEecccCceee------c-CCC-CCccccccCHHHHH
Q 011745 398 LNILPFRVAAYDTVEKKMAF------F-DPS-RAKDFLFISGTKMR 435 (478)
Q Consensus 398 i~i~~f~~~~Y~~~~~~~~~------~-~p~-~~~~~~~iSGT~vR 435 (478)
|.|...+..++|..|+...+ . ||. +..+...++|.+++
T Consensus 63 L~Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~i~~G~El~ 108 (117)
T PRK00564 63 LDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEMR 108 (117)
T ss_pred EEEEecCCEEEhhhCCCccccCCccCCcCcCCCCCceEEecCCEEE
Confidence 77777888999999997653 2 887 66666778886653
No 86
>cd02789 MopB_CT_FmdC-FwdD The MopB_FmdC-FwdD CD includes the C-terminus of subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC) and subunit D of tungsten formylmethanofuran dehydrogenase (FwdD), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding superfamily of proteins. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.64 E-value=90 Score=26.91 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=27.7
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~e 184 (478)
+.++.++|+ +|+.||.|.|....|.+.+...+.+
T Consensus 33 v~i~p~dA~~lgi~~Gd~V~v~~~~G~v~~~v~~~~ 68 (106)
T cd02789 33 CEINPEDYKLLGKPEGDKVKVTSEFGEVVVFAKENE 68 (106)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECC
Confidence 457777777 5678999999998999888888776
No 87
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.43 E-value=78 Score=27.47 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=27.8
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~ei 185 (478)
+.++.++|+ +|+.||.|.|.+..|.+.+...+++-
T Consensus 32 v~i~p~~A~~~gi~~Gd~V~v~s~~g~i~~~a~~~~~ 68 (121)
T cd02794 32 VWINPLDAAARGIKDGDRVLVFNDRGKVIRPVKVTER 68 (121)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCC
Confidence 456666666 56789999999999999988887763
No 88
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=28.66 E-value=6e+02 Score=25.32 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=52.4
Q ss_pred HHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceE-EEecCCCcccCChhHHHHHHHHHHhc
Q 011745 278 TRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTI-VSIFPSPMHYAGPTEVQWHAKARINA 356 (478)
Q Consensus 278 a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~-l~ilP~~mryAGPREAllHAivRkNy 356 (478)
-++.+++.| .+++++.=..| .--.+..+-|.+-.+.+.+ ....+..+ .++-. ...+|++-.|..++..
T Consensus 26 ~i~~l~~~G--v~gl~v~GstG--E~~~lt~~Er~~l~~~~~~--~~~~~~~vi~gv~~-----~~~~~~~~~a~~a~~~ 94 (284)
T cd00950 26 LIEFQIENG--TDGLVVCGTTG--ESPTLSDEEHEAVIEAVVE--AVNGRVPVIAGTGS-----NNTAEAIELTKRAEKA 94 (284)
T ss_pred HHHHHHHcC--CCEEEECCCCc--chhhCCHHHHHHHHHHHHH--HhCCCCcEEeccCC-----ccHHHHHHHHHHHHHc
Confidence 334556666 56788754444 4456888999999998886 34433222 32221 2458999999999999
Q ss_pred CCceeeecC
Q 011745 357 GANFYIVGR 365 (478)
Q Consensus 357 GcTHfIVGR 365 (478)
|++.+++..
T Consensus 95 G~d~v~~~~ 103 (284)
T cd00950 95 GADAALVVT 103 (284)
T ss_pred CCCEEEEcc
Confidence 999999874
No 89
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.43 E-value=83 Score=26.84 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=28.8
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEecccc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEIY 186 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~eiy 186 (478)
+.++.++|+ +|+.||.|.|....|++.+.+.+++--
T Consensus 33 v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~~~~~i 70 (116)
T cd02786 33 LLIHPADAAARGIADGDLVVVFNDRGSVTLRAKVTDDV 70 (116)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCCC
Confidence 456766666 568999999999999999998887743
No 90
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=27.98 E-value=2.6e+02 Score=25.87 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=51.5
Q ss_pred eEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC------CCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 011745 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG------FTKADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (478)
Q Consensus 257 ~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG------~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~ 330 (478)
+|+..=+-+|+|.||..+++.| .++|- ++-|.+ -+.. .+..--++.+.|+.+.+++ + |.. .++
T Consensus 4 rV~~~G~FDl~H~GHi~~L~~A----~~lg~-~d~LiV-gV~sD~~~~~~k~~pi~~~~eR~~~l~~~-~--~Vd--~Vi 72 (150)
T cd02174 4 RVYVDGCFDLFHYGHANALRQA----KKLGP-NDYLIV-GVHSDEEIHKHKGPPVMTEEERYEAVRHC-K--WVD--EVV 72 (150)
T ss_pred EEEEeCccCCCCHHHHHHHHHH----HHhCC-CCEEEE-EEecCHHHhhcCCCCcCCHHHHHHHHHhc-C--CCC--eEE
Confidence 4554448999999999998765 34430 022222 1211 0112458999999988865 2 443 243
Q ss_pred EEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCC
Q 011745 331 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (478)
Q Consensus 331 l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHA 368 (478)
+ .-|. +..+. +-+.++|+.++.|.|..
T Consensus 73 ~-~~~~-----~~~~~-----~i~~~~~d~vv~G~d~~ 99 (150)
T cd02174 73 E-GAPY-----VTTPE-----FLDKYKCDYVAHGDDIY 99 (150)
T ss_pred E-CCCC-----CChHH-----HHHHhCCCEEEECCCCC
Confidence 3 1121 11111 23578999999998865
No 91
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=26.31 E-value=96 Score=26.25 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=27.1
Q ss_pred ccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEecccc
Q 011745 152 AIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEIY 186 (478)
Q Consensus 152 ~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~eiy 186 (478)
-++.++|+ +|+.||.|.|....|++.+.+.+++--
T Consensus 38 ~in~~dA~~lgi~~Gd~V~v~~~~G~~~~~v~i~~~i 74 (116)
T cd02790 38 EINPEDAKRLGIEDGEKVRVSSRRGSVEVRARVTDRV 74 (116)
T ss_pred EECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCCc
Confidence 45666665 458999999999899988888877643
No 92
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=25.70 E-value=1.1e+02 Score=26.13 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=28.4
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEecccc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEIY 186 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~eiy 186 (478)
+.++.++|+ +|+.||.|.|....|++.+.+.+++--
T Consensus 37 v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~v~~~i 74 (122)
T cd02792 37 VEISPELAAERGIKNGDMVWVSSPRGKIKVKALVTDRV 74 (122)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCCc
Confidence 346666666 457899999999999999999887743
No 93
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=25.28 E-value=43 Score=26.49 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=17.7
Q ss_pred HHHhhcCCCCeEEEeCCCCCEEEE
Q 011745 156 ETKERIGSTTNVALLGPTGDLIGI 179 (478)
Q Consensus 156 e~a~~l~~G~~vaL~d~eG~~lAi 179 (478)
+.+.=|+.|..+.+.-.+|+++++
T Consensus 35 d~~~~L~e~~~v~v~~~~~~~i~v 58 (61)
T cd04470 35 DAAKFLKEGMEVIVLFYNGEPIGV 58 (61)
T ss_pred hHHhhCcCCCEEEEEEECCEEEEE
Confidence 334457889888876568998876
No 94
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=25.22 E-value=4.1e+02 Score=26.62 Aligned_cols=100 Identities=17% Similarity=0.096 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCc-eEEEecCCCcccCChhHHHHH
Q 011745 271 HALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPET-TIVSIFPSPMHYAGPTEVQWH 349 (478)
Q Consensus 271 He~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~-~~l~ilP~~mryAGPREAllH 349 (478)
++.-++.-++.+++.| .+++++.-..| ..--++.+-|.+-++.+++ ..+.+. ++.++-.. .-+|++=+
T Consensus 20 d~~~~~~~i~~l~~~G--v~gl~~~GstG--E~~~Lt~~Er~~l~~~~~~--~~~~~~~vi~gv~~~-----st~~~i~~ 88 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAG--VDGLVVLGSTG--EFYSLTDEERKELLEIVVE--AAAGRVPVIAGVGAN-----STEEAIEL 88 (289)
T ss_dssp -HHHHHHHHHHHHHTT--SSEEEESSTTT--TGGGS-HHHHHHHHHHHHH--HHTTSSEEEEEEESS-----SHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC--CCEEEECCCCc--ccccCCHHHHHHHHHHHHH--HccCceEEEecCcch-----hHHHHHHH
Confidence 3333333445556676 67888744433 3445788999999998886 555543 33333222 46899999
Q ss_pred HHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhc
Q 011745 350 AKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAL 393 (478)
Q Consensus 350 AivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~ 393 (478)
|...+..|++.++|..- ||....-+++++.|.
T Consensus 89 a~~a~~~Gad~v~v~~P------------~~~~~s~~~l~~y~~ 120 (289)
T PF00701_consen 89 ARHAQDAGADAVLVIPP------------YYFKPSQEELIDYFR 120 (289)
T ss_dssp HHHHHHTT-SEEEEEES------------TSSSCCHHHHHHHHH
T ss_pred HHHHhhcCceEEEEecc------------ccccchhhHHHHHHH
Confidence 99999999999988542 555555666776653
No 95
>PRK13599 putative peroxiredoxin; Provisional
Probab=25.10 E-value=3.2e+02 Score=26.70 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=54.6
Q ss_pred cceeeEeccCHHHHhhcCC---------CCeEEEeCCCCCEEEEEEeccccccCHHH--HHHHhhCCCCCCCcchhhhcc
Q 011745 145 MSLPIVLAIDDETKERIGS---------TTNVALLGPTGDLIGILRSIEIYKHNKEE--RIARTWGTTAAGLPYVEEVIT 213 (478)
Q Consensus 145 wpiPItL~V~~e~a~~l~~---------G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~--ea~~vfGT~d~~HPgV~~~~~ 213 (478)
.++||..|.+.+.++.+.. --.+-++|++|++..+......=..+-++ ++.+-..++|. | +|+.
T Consensus 91 i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~~-~-~~~~--- 165 (215)
T PRK13599 91 IPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQ-Y-GVAL--- 165 (215)
T ss_pred CceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhhh-c-CCCc---
Confidence 3679999888888777653 13467789999999987543322222222 22222334442 2 4443
Q ss_pred cCCcEEE----eeeEEEecCCCCCCCcCcCCCCHHHHHHHHHh---cCCCeE
Q 011745 214 PAGNWLV----GGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDN---RQADAI 258 (478)
Q Consensus 214 ~~g~~~v----gG~v~~l~~~~~~d~f~~~r~tP~E~R~~f~~---~gw~~V 258 (478)
--+|-- |.+|-+ .|+ .|-.|.++.|.+ .|++.+
T Consensus 166 -p~~w~~~~~~g~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~ 205 (215)
T PRK13599 166 -PEKWPNNYLIKDHVIV-PPS----------TDEASANERKEKIKSKEIEAF 205 (215)
T ss_pred -CCCCCCCCCCCCcEEE-cCC----------CCHHHHHHhccccccCCcccc
Confidence 234533 444444 222 367888888864 466644
No 96
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.60 E-value=1e+02 Score=26.78 Aligned_cols=35 Identities=23% Similarity=0.096 Sum_probs=27.4
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~ei 185 (478)
+.++.++|+ +|+.||.|.|....|.+.+.+.+++-
T Consensus 35 v~inp~dA~~~gi~~Gd~V~v~s~~G~~~~~v~v~~~ 71 (130)
T cd02781 35 AEINPETAAKLGIADGDWVWVETPRGRARQKARLTPG 71 (130)
T ss_pred EEECHHHHHHcCCCCCCEEEEECCCCEEEEEEEECCC
Confidence 456666665 45899999999989999888877663
No 97
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.58 E-value=1e+02 Score=26.15 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=27.3
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~ei 185 (478)
+-++.++|+ +|+.||.|.|....|.+.+...+++-
T Consensus 37 v~inp~dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~ 73 (120)
T cd00508 37 VEIHPEDAARLGIKDGDLVRVSSRRGSVVVRARVTDR 73 (120)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCC
Confidence 346666665 46799999999989998888887764
No 98
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=24.54 E-value=1.1e+02 Score=26.44 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=28.6
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEecccc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEIY 186 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~eiy 186 (478)
+.++.++|+ +|+.||.|.|..+.|.+.+.+.+++--
T Consensus 35 v~in~~dA~~lgi~~Gd~V~v~s~~G~i~~~~~~~~~i 72 (115)
T cd02779 35 IEVNPEDAKREGLKNGDLVEVYNDYGSTTAMAYVTNTV 72 (115)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCCc
Confidence 456666665 567999999999999999999888743
No 99
>cd02775 MopB_CT Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=24.45 E-value=1.1e+02 Score=24.99 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=25.8
Q ss_pred ccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 011745 152 AIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (478)
Q Consensus 152 ~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~e 184 (478)
-++.++|+ +|+.||.|.|.+..|.+.+.+.+.+
T Consensus 26 ~~~~~da~~lgl~~Gd~v~v~~~~g~~~~~v~~~~ 60 (101)
T cd02775 26 EINPEDAAALGIKDGDLVRVESRRGSVVLRAKVTD 60 (101)
T ss_pred EECHHHHHHcCCCCCCEEEEEcCCcEEEEEEEECC
Confidence 45666655 5678999999998999888887665
No 100
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=23.88 E-value=1.3e+02 Score=31.11 Aligned_cols=44 Identities=27% Similarity=0.511 Sum_probs=32.6
Q ss_pred eEEEecC-CCcccCChhHHHHH-HHHHHhcCCceeeecCCCCCCCCC
Q 011745 329 TIVSIFP-SPMHYAGPTEVQWH-AKARINAGANFYIVGRDPAGMGHP 373 (478)
Q Consensus 329 ~~l~ilP-~~mryAGPREAllH-AivRkNyGcTHfIVGRDHAGvG~~ 373 (478)
....+.| +-++|.||.-|--. ++.. +-==|-+|+|.||-|.|.+
T Consensus 46 ~~~~v~PHAGy~ySG~taa~~y~~l~~-~~~~~vVIlGPnHtg~g~~ 91 (279)
T COG1355 46 AIGIVVPHAGYRYSGPTAAHVYSALDE-GEPDTVVILGPNHTGLGSP 91 (279)
T ss_pred ceEEEcCCCCcEecchhHHHHHHHhhc-CCCCEEEEECCCCCCCCCc
Confidence 4445777 88999999877554 4444 3335788999999999964
No 101
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.81 E-value=1e+02 Score=28.29 Aligned_cols=34 Identities=9% Similarity=-0.108 Sum_probs=26.9
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~e 184 (478)
+.++.++|+ +|+.||.|.|..+.|.+.+...|++
T Consensus 40 v~InP~dA~~lGI~dGD~V~V~s~~G~i~~~a~vt~ 75 (137)
T cd02784 40 ALVSPRTAEALGLLQGDVVRIRRGGRTIELPVWIQP 75 (137)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECC
Confidence 345555555 6789999999988999998888876
No 102
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=23.77 E-value=76 Score=26.70 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=26.6
Q ss_pred ccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 011745 152 AIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (478)
Q Consensus 152 ~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~ei 185 (478)
-++.++|+ +|+.||.|.|..+.|.+.+...+++-
T Consensus 33 ~inp~dA~~~Gi~~Gd~V~v~s~~G~v~~~v~~~~~ 68 (110)
T PF01568_consen 33 EINPEDAAKLGIKDGDWVRVSSPRGSVEVRVKVTDG 68 (110)
T ss_dssp EEEHHHHHHCT--TTCEEEEEETTEEEEEEEEEETT
T ss_pred EEcHHHHHHhcCcCCCEEEEEeccceEeeeeEEecC
Confidence 46777766 56799999999999999999998873
No 103
>PRK04980 hypothetical protein; Provisional
Probab=23.67 E-value=89 Score=27.70 Aligned_cols=30 Identities=0% Similarity=-0.044 Sum_probs=26.4
Q ss_pred hhcCCCCeEEE-eCCCCCEEEEEEecccccc
Q 011745 159 ERIGSTTNVAL-LGPTGDLIGILRSIEIYKH 188 (478)
Q Consensus 159 ~~l~~G~~vaL-~d~eG~~lAiL~V~eiy~~ 188 (478)
...++||.+.+ ++.+|++++.+.|.++-..
T Consensus 30 ~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i 60 (102)
T PRK04980 30 SHFKPGDVLRVGTFEDDRYFCTIEVLSVSPV 60 (102)
T ss_pred cCCCCCCEEEEEECCCCcEEEEEEEEEEEEE
Confidence 46889999999 7889999999999998865
No 104
>PF12450 vWF_A: von Willebrand factor ; InterPro: IPR022156 This domain family is found in bacteria, and is approximately 100 amino acids in length. The family is found in association with PF00092 from PFAM. There are two conserved sequence motifs: STF and DVD. There are two completely conserved residues (E and N) that may be functionally important. In hemostasis, platelet adhesion to the damaged vessel wall is mediated by several proteins, including von Willebrand factor. In solution vWF becomes immobilized via its A3 domain on the fibrillar collagen of the vessel wall and acts as an intermediary between collagen and the platelet receptor glycoprotein Ibalpha (GPIbalpha), which is the only platelet receptor that does not require prior activation for bond formation.
Probab=23.51 E-value=71 Score=28.18 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=27.2
Q ss_pred ccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHhh
Q 011745 426 FLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYYE 462 (478)
Q Consensus 426 ~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~~ 462 (478)
...=|=+.+|++|+.|..||++-.|.| ++..|..
T Consensus 35 VDtaSYs~vRr~L~~G~lPp~~aVR~E---E~iNyF~ 68 (99)
T PF12450_consen 35 VDTASYSNVRRFLNQGQLPPPDAVRIE---EMINYFD 68 (99)
T ss_pred cCcccHHHHHHHHHCCCCCCcCceeHH---HHhhccc
Confidence 334577889999999999999999976 6666643
No 105
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain. The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
Probab=23.43 E-value=44 Score=25.36 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=17.3
Q ss_pred HHhhcCCCCeEEEeCCCCCEEEE
Q 011745 157 TKERIGSTTNVALLGPTGDLIGI 179 (478)
Q Consensus 157 ~a~~l~~G~~vaL~d~eG~~lAi 179 (478)
.+.-|++|..+.+.-.+|+++++
T Consensus 33 ~~~~l~eg~~v~v~~~~g~~i~~ 55 (55)
T cd04463 33 SFESFEPGEVVLVDTRTGQYVGV 55 (55)
T ss_pred HHhhCCCCCEEEEEEECCEEEeC
Confidence 46668899998876568887763
No 106
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.05 E-value=1.1e+02 Score=26.17 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=27.9
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~e 184 (478)
+.++.++|+ +|+.||.|.+.++.|.+.+...+++
T Consensus 33 v~i~p~dA~~lgI~dGd~V~v~s~~G~i~~~a~v~~ 68 (112)
T cd02787 33 VFMNPDDIARLGLKAGDRVDLESAFGDGQGRIVRGF 68 (112)
T ss_pred EEECHHHHHHhCCCCCCEEEEEecCCCCeEEEEecc
Confidence 456666666 5689999999999999999888877
No 107
>cd02776 MopB_CT_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. This CD (MopB_CT_Nitrate-R-NarG-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=22.97 E-value=1.3e+02 Score=27.45 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=27.9
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~e 184 (478)
+.++.++|+ +|+.||.|.+.+..|++.+...+++
T Consensus 33 v~inp~dA~~lgI~dGd~V~v~~~~G~v~~~a~v~~ 68 (141)
T cd02776 33 VWMNPKDAAELGIKDNDWVEVFNDNGVVVARAKVSP 68 (141)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECC
Confidence 457777766 6789999999988899988888776
No 108
>cd02780 MopB_CT_Tetrathionate_Arsenate-R This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of tetrathionate reductase, subunit A, (TtrA); respiratory arsenate As(V) reductase, catalytic subunit (ArrA); and other related proteins.
Probab=22.77 E-value=1.2e+02 Score=27.27 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=28.0
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~ei 185 (478)
+.+..++|+ +|+.||.|.|.+..|.+.+.+.+++-
T Consensus 32 v~inp~dA~~lgI~~Gd~V~v~s~~G~i~~~v~i~~~ 68 (143)
T cd02780 32 VWINPEDAAKLGIKTGDRVRVVTPGGSVVGKAKVTEG 68 (143)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCceEEEEEEECCC
Confidence 346666666 56899999999999999998888764
No 109
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=22.66 E-value=93 Score=24.40 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.2
Q ss_pred cCCCCeEEEeCCCCCEEEEEEe
Q 011745 161 IGSTTNVALLGPTGDLIGILRS 182 (478)
Q Consensus 161 l~~G~~vaL~d~eG~~lAiL~V 182 (478)
+++|+.|++.|.+|+.+|.-..
T Consensus 31 ~~~g~~V~v~~~~g~~vg~G~~ 52 (77)
T smart00359 31 IKEGDVVVIVDEKGEPLGIGLA 52 (77)
T ss_pred cCCCCEEEEEcCCCCEEEEEEE
Confidence 6789999999989999998763
No 110
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=22.55 E-value=81 Score=25.46 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=22.6
Q ss_pred eeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEe
Q 011745 148 PIVLAIDDETKERIGSTTNVALLGPTGDLIGILRS 182 (478)
Q Consensus 148 PItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V 182 (478)
|=+..++++ +++||.|.+.+.+|+.+|+=..
T Consensus 22 ~GV~~~~~~----f~~gd~V~i~~~~g~~ia~G~a 52 (74)
T PF01472_consen 22 PGVVEVDGD----FRKGDEVAIVDEDGEVIAVGRA 52 (74)
T ss_dssp GGEEEEETT------TTSEEEEEETTSSEEEEEEE
T ss_pred HHhEECCCC----cCCCCEEEEEcCCCeEEEEEEE
Confidence 544566554 5789999999999999998664
No 111
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=22.54 E-value=7.7e+02 Score=24.87 Aligned_cols=92 Identities=16% Similarity=0.051 Sum_probs=59.4
Q ss_pred HHHHH-cCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCC
Q 011745 280 RRLLE-MGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGA 358 (478)
Q Consensus 280 ~~ale-~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGc 358 (478)
+.+++ .| .+++++.=..| .---++.+-|.+-.+.+++ ....+..+++.+- -.+-+|++-.|.-++..||
T Consensus 31 ~~l~~~~G--v~gi~v~GstG--E~~~Ls~eEr~~~~~~~~~--~~~~~~~viagvg----~~~t~~ai~~a~~a~~~Ga 100 (293)
T PRK04147 31 RFNIEKQG--IDGLYVGGSTG--EAFLLSTEEKKQVLEIVAE--EAKGKVKLIAQVG----SVNTAEAQELAKYATELGY 100 (293)
T ss_pred HHHHhcCC--CCEEEECCCcc--ccccCCHHHHHHHHHHHHH--HhCCCCCEEecCC----CCCHHHHHHHHHHHHHcCC
Confidence 34456 55 56788744433 3355788999999888886 3443322332221 1467999999999999999
Q ss_pred ceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhc
Q 011745 359 NFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAL 393 (478)
Q Consensus 359 THfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~ 393 (478)
+.+++-. +||-+....++++.|.
T Consensus 101 d~v~v~~------------P~y~~~~~~~l~~~f~ 123 (293)
T PRK04147 101 DAISAVT------------PFYYPFSFEEICDYYR 123 (293)
T ss_pred CEEEEeC------------CcCCCCCHHHHHHHHH
Confidence 9999873 2444444466766653
No 112
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.46 E-value=82 Score=29.91 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=23.8
Q ss_pred eEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEE
Q 011745 149 IVLAIDDETKERIGSTTNVALLGPTGDLIGILR 181 (478)
Q Consensus 149 ItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~ 181 (478)
.+++++++ |.+||++..+|.+|+++|+=.
T Consensus 103 fVi~~D~~----iR~~dEvlVVne~d~LlAvGr 131 (155)
T COG1370 103 FVIDVDEE----IRAGDEVLVVNEDDELLAVGR 131 (155)
T ss_pred heeccCcc----cCCCCeEEEECCCCcEEEeee
Confidence 56777764 789999999999999988643
No 113
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=21.54 E-value=23 Score=35.55 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=43.9
Q ss_pred EeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEecccccc------CHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeee
Q 011745 150 VLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKH------NKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGD 223 (478)
Q Consensus 150 tL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~------Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~ 223 (478)
=+.|..+.+..++.|..+.|-| +|.++++|+. -.++..+++|||+|+. -|.. ++.-.|+
T Consensus 20 EvlvdP~~a~~~R~g~~vdlee-------vLa~~~Vf~da~KG~~Ase~dL~k~FgTtd~~--eI~~------eIl~kGe 84 (234)
T COG1500 20 EVLVDPNKALEYREGKEVDLEE-------VLATETVFKDASKGEKASEEDLKKAFGTTDPD--EIAE------EILKKGE 84 (234)
T ss_pred EEEECHhHHHHHHcCCCCCHHH-------HHhHHHHHHhccccccCCHHHHHHHhCCCCHH--HHHH------HHHhcCc
Confidence 3457778888899999888864 6788999976 2356788999999942 2332 2345566
Q ss_pred EEE
Q 011745 224 LEV 226 (478)
Q Consensus 224 v~~ 226 (478)
+.+
T Consensus 85 iQl 87 (234)
T COG1500 85 IQL 87 (234)
T ss_pred eec
Confidence 665
No 114
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=21.48 E-value=1.3e+02 Score=26.35 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=27.2
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~ei 185 (478)
+.++.++|+ +|+.||.|.|....|.+.+...+++-
T Consensus 36 v~i~p~dA~~lgi~~Gd~V~v~s~~g~i~~~v~i~~~ 72 (127)
T cd02777 36 VWINPLDAAARGIKDGDIVRVFNDRGAVLAGARVTDR 72 (127)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCC
Confidence 456666665 56789999999989999888887763
No 115
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=20.88 E-value=75 Score=30.28 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=33.5
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcc----ccCC-CCCCCCChHHHHHHHHHHHHc
Q 011745 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP----LGGF-TKADDVPLDVRMEQHSKVLED 321 (478)
Q Consensus 262 QTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~P----lvG~-tK~~Di~~~~Rvr~y~~ll~~ 321 (478)
=|-+++|.||..|+..| .++| ..+.|=- ++-. .+..-.|+++|++-...++..
T Consensus 12 GTFd~LH~GHk~LL~~A----~~~G---~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~ 69 (158)
T COG1019 12 GTFDRLHDGHKKLLEVA----FEIG---DRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLES 69 (158)
T ss_pred ccchhhhhhHHHHHHHH----HHhC---CeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHH
Confidence 38999999999998654 4665 2333211 1111 233446888888888777763
No 116
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.51 E-value=49 Score=30.28 Aligned_cols=19 Identities=0% Similarity=-0.407 Sum_probs=14.2
Q ss_pred ceeeEeeeEEEecccCcee
Q 011745 398 LNILPFRVAAYDTVEKKMA 416 (478)
Q Consensus 398 i~i~~f~~~~Y~~~~~~~~ 416 (478)
+.|...+..++|..|+...
T Consensus 62 L~i~~~p~~~~C~~CG~~~ 80 (135)
T PRK03824 62 IIFEEEEAVLKCRNCGNEW 80 (135)
T ss_pred EEEEecceEEECCCCCCEE
Confidence 5666667788999998554
No 117
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.39 E-value=1.3e+02 Score=26.45 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=27.8
Q ss_pred eccCHHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 011745 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (478)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~lAiL~V~ei 185 (478)
+.+..++|+ +|+.||.|.+.+..|.+.+.+.+++-
T Consensus 35 v~i~p~dA~~~gi~~Gd~V~v~s~~G~~~~~~~~~~~ 71 (129)
T cd02793 35 IRINPADAAARGIADGDIVRVFNDRGACLAGAVVTDG 71 (129)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCC
Confidence 456666655 67899999999999999988888663
Done!