Query 011745
Match_columns 478
No_of_seqs 157 out of 603
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:28:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x6v_B Bifunctional 3'-phospho 100.0 9E-132 3E-136 1078.2 40.6 399 65-467 224-624 (630)
2 1r6x_A ATP:sulfate adenylyltra 100.0 4E-131 1E-135 1021.4 34.2 387 67-468 2-394 (395)
3 1g8f_A Sulfate adenylyltransfe 100.0 7E-124 3E-128 996.1 34.9 387 65-466 1-393 (511)
4 1jhd_A Sulfate adenylyltransfe 100.0 2E-117 5E-122 921.2 30.7 382 65-465 1-395 (396)
5 1m8p_A Sulfate adenylyltransfe 100.0 2E-116 7E-121 949.8 31.2 385 65-464 2-392 (573)
6 2gks_A Bifunctional SAT/APS ki 100.0 3E-114 1E-118 927.5 32.1 365 88-465 2-369 (546)
7 3cr8_A Sulfate adenylyltranfer 100.0 3E-114 1E-118 929.3 30.1 361 63-464 3-365 (552)
8 1v47_A ATP sulfurylase; produc 100.0 3E-110 9E-115 855.2 31.2 343 91-460 3-348 (349)
9 1od6_A PPAT, phosphopantethein 98.5 1.7E-06 5.9E-11 77.3 15.2 149 263-462 8-159 (160)
10 1qjc_A Phosphopantetheine aden 98.3 2.9E-05 9.8E-10 69.1 16.9 148 262-461 8-157 (158)
11 1ej2_A Nicotinamide mononucleo 98.2 3.7E-05 1.3E-09 70.7 15.2 150 259-460 7-160 (181)
12 1k4m_A NAMN adenylyltransferas 98.1 2.7E-05 9.1E-10 73.3 13.4 177 259-460 7-209 (213)
13 1kam_A Deamido-NAD(+), nicotin 98.1 0.00011 3.7E-09 68.1 16.9 171 258-459 10-188 (194)
14 1o6b_A Phosphopantetheine aden 98.1 7.3E-05 2.5E-09 67.6 14.9 152 258-460 5-157 (169)
15 3f3m_A Phosphopantetheine aden 97.9 0.00021 7.3E-09 65.9 14.1 148 263-462 11-160 (168)
16 2qtr_A Nicotinate (nicotinamid 97.9 4.3E-05 1.5E-09 70.0 9.4 165 261-459 8-183 (189)
17 1f9a_A Hypothetical protein MJ 97.9 0.00022 7.4E-09 64.8 13.7 143 263-460 8-154 (168)
18 3k9w_A Phosphopantetheine aden 97.9 0.00038 1.3E-08 65.3 15.5 156 256-462 23-179 (187)
19 3nv7_A Phosphopantetheine aden 97.7 0.00016 5.6E-09 66.0 9.5 146 263-459 10-156 (157)
20 4f3r_A Phosphopantetheine aden 97.6 0.00017 5.7E-09 66.1 9.3 150 259-461 9-160 (162)
21 1vlh_A Phosphopantetheine aden 97.6 0.001 3.6E-08 60.9 14.6 147 263-463 20-170 (173)
22 3nd5_A Phosphopantetheine aden 97.5 0.0006 2.1E-08 63.0 10.4 144 263-460 10-158 (171)
23 2qjo_A Bifunctional NMN adenyl 97.3 0.00037 1.3E-08 68.7 7.9 149 262-461 14-172 (341)
24 3h05_A Uncharacterized protein 97.3 0.00019 6.4E-09 66.6 5.0 149 263-460 10-167 (177)
25 3nbk_A Phosphopantetheine aden 97.3 0.0038 1.3E-07 58.2 13.6 150 258-461 24-176 (177)
26 2h29_A Probable nicotinate-nuc 97.3 0.0015 5.1E-08 60.1 10.8 168 262-460 9-184 (189)
27 1yum_A 'probable nicotinate-nu 97.2 0.0052 1.8E-07 59.4 13.9 167 262-459 30-226 (242)
28 3gmi_A UPF0348 protein MJ0951; 97.1 0.0016 5.4E-08 66.9 10.1 178 256-462 53-261 (357)
29 2x0k_A Riboflavin biosynthesis 97.1 0.0022 7.4E-08 65.3 10.9 151 257-442 17-175 (338)
30 2qjt_B Nicotinamide-nucleotide 97.0 0.0078 2.7E-07 59.6 14.0 152 263-463 15-179 (352)
31 1nup_A FKSG76; NAD biosynthesi 96.7 0.0094 3.2E-07 57.7 11.0 180 258-459 9-229 (252)
32 1kqn_A Nmnat, nicotinamide mon 96.4 0.032 1.1E-06 55.0 13.2 180 258-459 11-250 (279)
33 2b7l_A Glycerol-3-phosphate cy 96.4 0.03 1E-06 48.2 11.2 88 258-368 4-96 (132)
34 1mrz_A Riboflavin kinase/FMN a 96.0 0.058 2E-06 53.8 12.7 138 260-442 4-148 (293)
35 3op1_A Macrolide-efflux protei 95.7 0.042 1.4E-06 55.3 10.1 103 256-368 21-133 (308)
36 3glv_A Lipopolysaccharide core 94.0 0.066 2.3E-06 47.2 5.5 88 256-367 3-95 (143)
37 1coz_A Protein (glycerol-3-pho 94.0 0.56 1.9E-05 39.8 11.2 87 259-368 5-96 (129)
38 1lw7_A Transcriptional regulat 93.5 0.68 2.3E-05 46.2 12.5 51 263-320 10-70 (365)
39 3do8_A Phosphopantetheine aden 80.4 1.4 4.8E-05 39.3 4.1 53 263-321 8-65 (148)
40 2ejc_A Pantoate--beta-alanine 67.4 3.3 0.00011 41.0 3.4 55 240-298 4-61 (280)
41 3n8h_A Pantothenate synthetase 64.5 4.4 0.00015 40.0 3.6 56 239-297 6-62 (264)
42 3uk2_A Pantothenate synthetase 64.2 2.8 9.6E-05 41.7 2.1 65 239-309 7-71 (283)
43 3inn_A Pantothenate synthetase 60.8 5.5 0.00019 40.2 3.5 69 239-311 24-94 (314)
44 3v67_A Sensor protein CPXA; PA 60.5 4.8 0.00016 35.8 2.8 55 163-226 54-110 (138)
45 3elb_A Ethanolamine-phosphate 58.2 7.1 0.00024 39.6 3.9 90 256-369 8-103 (341)
46 3ag6_A Pantothenate synthetase 52.9 10 0.00035 37.7 3.9 62 240-307 5-70 (283)
47 3q12_A Pantoate--beta-alanine 52.7 8.3 0.00028 38.4 3.3 41 239-279 6-48 (287)
48 1v8f_A Pantoate-beta-alanine l 49.9 8.2 0.00028 38.2 2.7 60 240-306 4-63 (276)
49 3mxt_A Pantothenate synthetase 38.1 10 0.00036 37.7 1.4 67 239-311 6-75 (285)
50 3elb_A Ethanolamine-phosphate 28.9 54 0.0018 33.1 4.9 94 254-370 197-299 (341)
51 1xvq_A Thiol peroxidase; thior 28.1 98 0.0034 26.7 5.9 57 146-202 100-168 (175)
52 3hl4_A Choline-phosphate cytid 26.0 42 0.0014 32.4 3.3 107 239-366 60-171 (236)
53 2kdx_A HYPA, hydrogenase/ureas 24.1 18 0.00062 30.7 0.3 38 398-435 65-110 (119)
54 3gl3_A Putative thiol:disulfid 23.0 1.4E+02 0.0049 24.2 5.8 62 146-207 86-150 (152)
55 3cov_A Pantothenate synthetase 22.9 39 0.0013 33.7 2.5 54 240-297 15-72 (301)
56 1jil_A Tyrrs, tyrosyl-tRNA syn 21.4 1.6E+02 0.0056 30.3 6.9 44 242-286 20-64 (420)
57 2ts1_A Tyrosyl-tRNA synthetase 21.0 1.8E+02 0.0063 30.0 7.2 44 242-286 18-62 (419)
58 3ctu_A CBS domain protein; str 20.7 66 0.0023 26.8 3.2 32 157-188 108-139 (156)
59 3k6e_A CBS domain protein; str 20.1 60 0.0021 27.9 2.9 31 157-187 108-138 (156)
No 1
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=100.00 E-value=9e-132 Score=1078.22 Aligned_cols=399 Identities=57% Similarity=1.037 Sum_probs=384.1
Q ss_pred CcCCCCcc--ccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCe
Q 011745 65 LIEPDGGV--LVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSI 142 (478)
Q Consensus 65 l~~phGg~--Lv~l~v~~~~~~~l~~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~ 142 (478)
-+.||||+ |++|+|+++++++++++|++||+|.||+++++|||||++||||||+|||+++||+||+ ++|||+||..
T Consensus 224 ~~ip~G~~~~l~~l~v~~~~~~~~~~~a~~l~~i~l~~~~~~dlell~~G~fsPL~GfM~~~dy~~v~--~~~~l~~g~~ 301 (630)
T 1x6v_B 224 DIVPVDASYEVKELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCL--HFDCLLDGGV 301 (630)
T ss_dssp TSSCCCCCCSCCCCBCCGGGHHHHHHHHHTSCEEECCHHHHHHHHHHHHTTTTTCCSSCCHHHHHHHH--HHSEECTTSC
T ss_pred CcccccCcccceecccChHHHHHHHHhhccCCEEEECHHHHHHHHHHhcCCccCchhhCCHHHHHHHH--HhCEeCCCCe
Confidence 35799965 9999999999999999999999999999999999999999999999999999999999 7999999743
Q ss_pred eccceeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEee
Q 011745 143 VNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGG 222 (478)
Q Consensus 143 w~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG 222 (478)
++|||||||+|+++++++|++|++|+| |++|+++|+|+|+|+|++||++||++||||+|++||||++++. +|+|+|||
T Consensus 302 ~~~~iPi~L~v~~~~~~~l~~g~~v~L-~~~g~~~a~l~v~e~~~~dk~~~a~~v~gt~d~~HPgv~~~~~-~g~~~vgG 379 (630)
T 1x6v_B 302 INLSVPIVLTATHEDKERLDGCTAFAL-MYEGRRVAILRNPEFFEHRKEERCARQWGTTCKNHPYIKMVME-QGDWLIGG 379 (630)
T ss_dssp EECCSCCCEEECHHHHHHHTTCSEEEE-EETTEEEEEEEEEEEEECCHHHHHHHHHSCCCTTSHHHHHHHH-SCSEEEEE
T ss_pred eeeeeEEEEeCCHHHHhhCCCCCEEEE-ccCCeEEEEEEeeEEEecCHHHHHHHHhCCCCCCCcchHHHHh-CCCEEEEe
Confidence 348999999999999999999999999 6999999999999999999999999999999999999999875 69999999
Q ss_pred eEEEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC
Q 011745 223 DLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK 302 (478)
Q Consensus 223 ~v~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK 302 (478)
+|+++++|.|+|+|++||+||+|+|+.|+++||++|||||||||+|||||+|||+|++.+.+.|+++++|||||++|+||
T Consensus 380 ~i~~l~~~~~~~~~~~~~~tP~e~r~~f~~~gw~~VvafqtrNP~HraHe~l~~~a~~~~~d~g~~~~~lll~pl~G~tk 459 (630)
T 1x6v_B 380 DLQVLDRVYWNDGLDQYRLTPTELKQKFKDMNADAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTK 459 (630)
T ss_dssp EEEECSCCCCCSSCGGGCCCHHHHHHHHHHTTCSEEEEEEESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEEBCSCCC
T ss_pred EEEEEecCcccccchhhcCCHHHHHHHHHHcCCCeEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCcEEEEeCcCCCC
Confidence 99999999888889999999999999999999999999999999999999999999987778888899999999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCC
Q 011745 303 ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDP 382 (478)
Q Consensus 303 ~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~ 382 (478)
+||||+++||+||++++++||||+++++|++||++|||||||||+||||+|||||||||||||||||||+++++.+|||+
T Consensus 460 ~~di~~~~r~~~~~~~~~~~y~p~~~~~l~~~p~~mryaGPrEa~~hai~rkN~Gcth~IVGrdhAG~g~~~~~~~~Y~~ 539 (630)
T 1x6v_B 460 DDDVPLMWRMKQHAAVLEEGVLNPETTVVAIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPAGMPHPETGKDLYEP 539 (630)
T ss_dssp TTSCCHHHHHHHHHHHHHTTSSCGGGEEECCBCCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTTCCBCTTTCSBSSCT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCcceEEeeccchhhhcCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCCCCccccCCc
Confidence 99999999999999999768999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhhcCCCcceeeEeeeEEEecccCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHhh
Q 011745 383 DHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYYE 462 (478)
Q Consensus 383 ~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~~ 462 (478)
|+||+||++++++.+|+|++|+++|||++|++|++.+||+++++++||||+||+||++|+.||+||||||||+||++||+
T Consensus 540 ~~aq~i~~~~~~~l~i~~~~~~~~~Y~~~~~~~~~~~p~~~~~~~~isgt~~R~~l~~G~~pP~~f~rpev~~~l~~~~~ 619 (630)
T 1x6v_B 540 SHGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLTEYYK 619 (630)
T ss_dssp THHHHHHHHCTTCTTCEEEECCCEEEETTTTEEEECCSTTGGGEECCCHHHHHHHHHTTCCCCTTSSCHHHHHHHHHHHH
T ss_pred chHHHHHhcCcccCCceEEEcceeEEEcccCceeccCCCCCceeeecCHHHHHHHHHCCCCCCcccCcHHHHHHHHHhcc
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q 011745 463 SLQAE 467 (478)
Q Consensus 463 ~~~~~ 467 (478)
++++.
T Consensus 620 ~~~~~ 624 (630)
T 1x6v_B 620 SLEKA 624 (630)
T ss_dssp HHCC-
T ss_pred Ccccc
Confidence 88653
No 2
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=100.00 E-value=3.7e-131 Score=1021.36 Aligned_cols=387 Identities=30% Similarity=0.484 Sum_probs=362.3
Q ss_pred CCCCccccccccCchh-hhhHHHHhcC--CCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCee
Q 011745 67 EPDGGVLVDLVVPESE-RGLRTTEAES--MPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIV 143 (478)
Q Consensus 67 ~phGg~Lv~l~v~~~~-~~~l~~~a~~--lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w 143 (478)
.||||+|+||+|++++ +++++++|++ ||+|+||+++++|||||++||||||+||||++||+||+ ++|||+||++
T Consensus 2 ~phgg~l~~l~v~~~~~~~~~~~~a~~~~lp~i~l~~~~l~dlell~~G~fsPL~GFM~~~dy~~V~--~~~rL~dG~~- 78 (395)
T 1r6x_A 2 APHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVV--TDSRLADGTL- 78 (395)
T ss_dssp CCTTSSCCBHHHHTGGGHHHHHHHHTCTTSEEEECCHHHHHHHHHHHBTTTTTCCEECCHHHHHHHH--HHSBCTTSCB-
T ss_pred cCCCccccccccCchHHhHHHHHHhhcCCCCeEEcCHHHHHHHHHHhcCCccCCcccCCHHHHHHHH--HhCcCCCCCC-
Confidence 5999999999998775 4559999999 99999999999999999999999999999999999999 7999999997
Q ss_pred ccceeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeee
Q 011745 144 NMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGD 223 (478)
Q Consensus 144 ~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~ 223 (478)
|||||||+|+++++++|++|++|+|+|++|+++|+|+|+|+|++||++||++||| +|++||||++++...|+|+|||+
T Consensus 79 -wpiPI~L~v~~e~~~~l~~g~~vaL~~~~g~~~ail~v~e~y~~dk~~~a~~vfg-~d~~HPgV~~~~~~~g~~~vgG~ 156 (395)
T 1r6x_A 79 -WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQDVYKPNKTIEAEKVFR-GDPEHPAISYLFNVAGDYYVGGS 156 (395)
T ss_dssp -CCSCCCEEECHHHHHTCCTTCEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHC-SCTTSHHHHHHHHTSCSEEEEEE
T ss_pred -cceEEEEeCCHHHHhhcCCCCEEEEEcCCCceEEEEEeeeeeccChHHHHHHHhC-CCcCCccHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999 99999999999865699999999
Q ss_pred EEEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhh-HHHHHHHHHHHHHcCCCCCeEEEccccCCCC
Q 011745 224 LEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGH-ALLMNDTRRRLLEMGYKNPILLLHPLGGFTK 302 (478)
Q Consensus 224 v~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaH-e~l~r~a~~~ale~g~~~~~lLL~PlvG~tK 302 (478)
|+++++|.|+ +|++||+||+|+|+.|+++||++|||||||||+|||| |+++|. |+|. +++|||||++|+||
T Consensus 157 v~~l~~~~~~-df~~~r~tP~e~R~~f~~~gw~~VvafqtrNP~HraH~e~~~r~----a~e~---~~~lllhPlvG~tK 228 (395)
T 1r6x_A 157 LEAIQLPQHY-DYPGLRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRA----AREA---NAKVLIHPVVGLTK 228 (395)
T ss_dssp EEESCCCCCC-SSTTCSCCHHHHHHHHHHTTCCCEEEECCSSCCCHHHHHHHHHH----HHHT---TCEEEECCBCSBCC
T ss_pred EEEEecCCcC-CchhhcCCHHHHHHHHHhcCCCcEEEeccCCCcchhhHHHHHHH----HHHc---CCcEEEEECCCCCC
Confidence 9999998887 6999999999999999999999999999999999999 777654 4565 48999999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCC
Q 011745 303 ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDP 382 (478)
Q Consensus 303 ~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~ 382 (478)
+||+|+++||+||+++++ +| |+++++|+++|++|||||||||+||||+|||||||||||||||||||+++++.+||++
T Consensus 229 ~~Dip~~vR~~~~~~~l~-~y-p~~~v~l~~~p~~mryAGPrEai~HAiiRkN~GcthfIVGRDhAG~g~~~~~~d~Y~~ 306 (395)
T 1r6x_A 229 PGDIDHHTRVRVYQEIIK-RY-PNGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFYGP 306 (395)
T ss_dssp TTCCCHHHHHHHHHHHGG-GS-STTCEEECCBCCBCCCCHHHHHHHHHHHHHHTTCSEEEECTTTTCCCBCTTSCBSSCT
T ss_pred CCCCCHHHHHHHHHHHHH-hC-CCccEEEEecchhhhhcCcHHHHHHHHHHHHcCCceEEECCCCCCCCCCCcccccCCc
Confidence 999999999999999996 45 9999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhhcCCCcceeeEeeeEEEecccCceeec--CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 383 DHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF--DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 383 ~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~--~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
|+||+||++++++.+|+|++|++++||++|++|++. |||+++++++||||+||+||++|+.||+|||||||++||+++
T Consensus 307 ~~aq~i~~~~~~el~I~~v~f~~~~Y~~~~~~~~~~~~~p~~~~~~~~iSGT~~R~~L~~G~~pP~~f~rpeV~~iL~~~ 386 (395)
T 1r6x_A 307 YDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRES 386 (395)
T ss_dssp THHHHHHHHHHHHHTCEEEECCCEEEEGGGTEEEETTTSCSSSCCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHTTC
T ss_pred chHHHHHHhchhccCceEEEecceEEecccCeEEEcccCCCCccceEccCHHHHHHHHHCcCCCCcccCCHHHHHHHHHh
Confidence 999999999987889999999999999999999995 899999999999999999999999999999999999999999
Q ss_pred hhhhhhhc
Q 011745 461 YESLQAEE 468 (478)
Q Consensus 461 ~~~~~~~~ 468 (478)
|++..+++
T Consensus 387 ~~~r~~qg 394 (395)
T 1r6x_A 387 NPPRPKGS 394 (395)
T ss_dssp --------
T ss_pred cCChhhcC
Confidence 99887754
No 3
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=100.00 E-value=7.4e-124 Score=996.11 Aligned_cols=387 Identities=31% Similarity=0.488 Sum_probs=366.9
Q ss_pred CcCCCCccccccccCchhh-hhHHHHhcC--CCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCC
Q 011745 65 LIEPDGGVLVDLVVPESER-GLRTTEAES--MPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGS 141 (478)
Q Consensus 65 l~~phGg~Lv~l~v~~~~~-~~l~~~a~~--lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~ 141 (478)
|+.||||+|+||+++++++ ++++++|++ ||+|+||+++++|||||++|+||||+|||+++||+||+ ++|||+||+
T Consensus 1 ~~~phgg~l~~~~~~~~~~~~~~~~~a~~~~lp~i~l~~~~~~dlell~~G~fsPL~GfM~~~d~~~v~--~~~rl~~G~ 78 (511)
T 1g8f_A 1 MPAPHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVV--TDSRLADGT 78 (511)
T ss_dssp -CCCTTSSCCCHHHHTGGGHHHHHHHHTCTTSEEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHH--HHSBCTTCC
T ss_pred CCCCCCCeeeccccCchhhhHHHHHHhhcCCCCeEEcCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCC
Confidence 4689999999999887754 559999999 99999999999999999999999999999999999999 799999998
Q ss_pred eeccceeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEe
Q 011745 142 IVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVG 221 (478)
Q Consensus 142 ~w~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vg 221 (478)
+ |||||||+|+++++++|++|++|+|+|++|+++|+|+|+|+|++||++||++||| +|++||||++++...|+|+||
T Consensus 79 ~--w~iPi~L~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~dk~~~~~~v~g-~d~~HPgv~~~~~~~g~~~v~ 155 (511)
T 1g8f_A 79 L--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQDVYKPNKTIEAERVFR-GDPEHPAISYLFNVAGDYYVG 155 (511)
T ss_dssp B--CCSCCCEEECHHHHTTCCTTCEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHC-SCTTSHHHHHHHHTSCSEEEE
T ss_pred C--cceeEEEeCCHHHHhhccCCCEEEEECCCCceEEEEEeeeeeccChHHHHHHHhC-CCcCCccHHHHHhhCCCEEEE
Confidence 7 7999999999999999999999999999999999999999999999999999999 999999999998656999999
Q ss_pred eeEEEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhh-HHHHHHHHHHHHHcCCCCCeEEEccccCC
Q 011745 222 GDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGH-ALLMNDTRRRLLEMGYKNPILLLHPLGGF 300 (478)
Q Consensus 222 G~v~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaH-e~l~r~a~~~ale~g~~~~~lLL~PlvG~ 300 (478)
|+|+++++|.|+ +|++||+||+|+|+.|+++||++|||||||||+|||| |+++|.+ +|. +++|||||++|+
T Consensus 156 G~v~~l~~~~~~-~~~~~~~tP~e~r~~f~~~gw~~v~afqtrnP~HraH~e~~~~~a----~e~---~~~lll~pl~g~ 227 (511)
T 1g8f_A 156 GSLEAIQLPQHY-DYPGLRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAA----REA---NAKVLIHPVVGL 227 (511)
T ss_dssp EEEEESCCCCCC-SCTTTCCCHHHHHHHHHHTTCCCEEEEEESSCCCHHHHHHHHHHH----HHH---TCEEEEEEBCSB
T ss_pred EEEEEEecCCcC-CchhhcCCHHHHHHHHHHcCCCcEEEEecCCCCchHHHHHHHHHH----HHc---CCcEEEEECCCC
Confidence 999999999887 6999999999999999999999999999999999999 7777644 455 489999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCC
Q 011745 301 TKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLY 380 (478)
Q Consensus 301 tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y 380 (478)
||+||+|+++||+||+++++ +| |+++++|+++|++|||||||||+||||+|||||||||||||||||||+++++.+||
T Consensus 228 ~k~~di~~~~r~~~~~~~~~-~y-p~~~~~l~~~p~~m~yaGprea~~hai~r~n~G~th~IvGrdhAg~g~~~~~~~~Y 305 (511)
T 1g8f_A 228 TKPGDIDHHTRVRVYQEIIK-RY-PNGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFY 305 (511)
T ss_dssp CSTTCCCHHHHHHHHHHHGG-GS-CTTSEEECCBCCBCCCCHHHHHHHHHHHHHHTTCSEEECCTTTTCCCBCTTSCBSS
T ss_pred CCCCCCCHHHHHHHHHHHHH-hC-CcccEEEEecchhhhccCcHHHHHHHHHHHhCCCceEEeCCCCCCCCCCCcccccC
Confidence 99999999999999999996 45 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHhhcCCCcceeeEeeeEEEecccCceeec--CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHH
Q 011745 381 DPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF--DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLV 458 (478)
Q Consensus 381 ~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~--~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~ 458 (478)
++|+||+||++++++.+|++++|++++||++|++|++. |||+++++++||||+||+||++|+.||+|||||||+++|+
T Consensus 306 ~~~~aq~i~~~~~~~l~i~pv~fd~~~y~~~~g~~i~~d~~p~~~~~~~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vLr 385 (511)
T 1g8f_A 306 GPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILR 385 (511)
T ss_dssp CTTHHHHHHHHTHHHHCSEEECCCCEEEEGGGTEEEEGGGCSSSCCCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHH
T ss_pred CcchHHHHHHhCccccCceEEeecceeEecccCeEEEcccCCCCcccccccCHHHHHHHHhCCCCCCccccChhhHHHHH
Confidence 99999999999987889999999999999999999996 8999899999999999999999999999999999999999
Q ss_pred HHhhhhhh
Q 011745 459 QYYESLQA 466 (478)
Q Consensus 459 ~~~~~~~~ 466 (478)
++|++..+
T Consensus 386 ~~~~~~~~ 393 (511)
T 1g8f_A 386 ESNPPRPK 393 (511)
T ss_dssp HHSCCGGG
T ss_pred Hhcccccc
Confidence 99987643
No 4
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=100.00 E-value=1.5e-117 Score=921.24 Aligned_cols=382 Identities=27% Similarity=0.423 Sum_probs=364.4
Q ss_pred CcCCCCcccccccc--CchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCe
Q 011745 65 LIEPDGGVLVDLVV--PESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSI 142 (478)
Q Consensus 65 l~~phGg~Lv~l~v--~~~~~~~l~~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~ 142 (478)
++.||||+|+||++ +++++++++++|++||+|.||+++++|||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 1 ~~~phgg~l~~~~~~~~~~~~~~~~~~a~~lp~i~l~~~~~~dlell~~G~fsPL~GFM~~~d~~~v~--~~~rl~~G~~ 78 (396)
T 1jhd_A 1 MIKPVGSDELKPLFVYDPEEHHKLSHEAESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAA--EKMTLSDGSF 78 (396)
T ss_dssp CCCCTTSSSCCCCBCCSHHHHHHHHHHHTTSCEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHH--HHSBCTTSCB
T ss_pred CCCCCCCeeeccccCCChHHHHHHHHHhccCCeEecCHHHHHHHHHHhcCCccCCcccCCHHHHHHHH--HhCcCCCCCC
Confidence 46799999999999 9999999999999999999999999999999999999999999999999999 7999999998
Q ss_pred eccceeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHH------HhhCCCCCCCcchhhhcccCC
Q 011745 143 VNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIA------RTWGTTAAGLPYVEEVITPAG 216 (478)
Q Consensus 143 w~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~------~vfGT~d~~HPgV~~~~~~~g 216 (478)
|||||||+|++ +++|++|++|+|+|++|+++|+|+|+|+|++||++||+ +||||+|++||||++++ ++|
T Consensus 79 --wpiPi~L~v~~--~~~l~~g~~v~L~d~~g~~~a~l~v~e~~~~dk~~~a~~~~~~~~v~gt~d~~HPgv~~~~-~~g 153 (396)
T 1jhd_A 79 --FPVPVLCLLEN--TDAIGDAKRIALRDPNVEGNPVLAVMDIEAIEEVSDEQMAVMTDKVYRTTDMDHIGVKTFN-SQG 153 (396)
T ss_dssp --CCSCCCCEESC--STTTTTCSEEEEECTTSTTCCEEEEEECCEEEECCHHHHHHHHHHHHSCCCTTSHHHHHHT-TSC
T ss_pred --ccEEEEEecch--hhhCCCCCEEEEECCCCceEEEEEeeeeeccChHHHhhhhcccccEECCCCCCCcchHHHh-hcC
Confidence 79999999997 88999999999999999999999999999999999999 99999999999999987 689
Q ss_pred cEEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcc
Q 011745 217 NWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP 296 (478)
Q Consensus 217 ~~~vgG~v~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~P 296 (478)
+|+|||+|+++++|.|+++|++||+||+|+|+.|+++||++|||||||||+||||++|++.|++.+ + .+++||||
T Consensus 154 ~~~vgG~v~~l~~~~~~~~~~~~~~tP~e~R~~f~~~gw~~VvafqTrNPiHrgH~~l~~~Ale~~---~--~D~vll~P 228 (396)
T 1jhd_A 154 RVAVSGPIQVLNFSYFQADFPDTFRTAVEIRNEIKEHGWSKVVAFQTRNPMHRAHEELCRMAMESL---D--ADGVVVHM 228 (396)
T ss_dssp SEEEEEEEEECCCHHHHHHCTTTBCCHHHHHHHHHHHTCSSEEEEEESSCCCHHHHHHHHHHHHHH---T--CSEEEEEE
T ss_pred CEEEEEEEEEEecccccccchhhcCCHHHHHHHHHhcCCceEEEeccCCCCchHHHHHHHHHHHHc---C--CCeEEEEE
Confidence 999999999999988777899999999999999999999999999999999999999998776532 2 36899999
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCC
Q 011745 297 LGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEK 376 (478)
Q Consensus 297 lvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~ 376 (478)
++|++|+||+|+++|++||+++++ +|||+++++++++|++||||||||++||||+|||||||||||||||||+|
T Consensus 229 ~~g~~K~~di~~~~R~~~~~~~~~-~~~p~~~v~l~~~p~~m~~aGPreailhaiirkn~G~t~fIVGrDhag~~----- 302 (396)
T 1jhd_A 229 LLGKLKKGDIPAPVRDAAIRTMAE-VYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVG----- 302 (396)
T ss_dssp EECCCCTTCCCHHHHHHHHHHHHH-HHSCTTCEEEEEEECCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCT-----
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-hcCCCcceEEEechHHhhcCCchHHHHHHHHHHcCCCcEEEECCCCCCcc-----
Confidence 999999999999999999999996 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhHHHHhh-cCC-CcceeeEeeeEEEecccCceeec--CCCC-CccccccCHHHHHHHHHCCCCCCCCCCch
Q 011745 377 RDLYDPDHGKKVLSMA-LGL-EKLNILPFRVAAYDTVEKKMAFF--DPSR-AKDFLFISGTKMRTFARSGENPPDGFMCP 451 (478)
Q Consensus 377 ~~~Y~~~~aq~i~~~~-~~~-~~i~i~~f~~~~Y~~~~~~~~~~--~p~~-~~~~~~iSGT~vR~~L~~G~~pP~~F~rP 451 (478)
+||++|+||+||+.+ +++ .+|++++|+.++||++|++|++. |||+ +++++.||||+||++|++|+.||+|||+|
T Consensus 303 -~~y~~~~aq~il~~~~~~~~l~i~iv~~~~~~Y~~~~~~~~~~~~~p~~~~~~~~~ISgT~IR~~L~~G~~pP~~f~~p 381 (396)
T 1jhd_A 303 -DYYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRDVPDHTKEDFVLLSGTKVREMLGQGIAPPPEFSRP 381 (396)
T ss_dssp -TCSCTTHHHHHHHHTSCTTSCSCEEEECCCEEEETTTTEEEEGGGCTTCCGGGEECCCHHHHHHHHHTTCCCCTTTCCH
T ss_pred -ccCCcchHHHHHHhcccccccceeEEecccceecCCCCeEEEccccCcccCCCccccCHHHHHHHHHCCCCCCcccCCH
Confidence 799999999999987 445 78999999999999999999985 9997 88999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhh
Q 011745 452 GGWKVLVQYYESLQ 465 (478)
Q Consensus 452 eV~~iL~~~~~~~~ 465 (478)
||+++|+++|++++
T Consensus 382 eV~~~I~~~~~~~~ 395 (396)
T 1jhd_A 382 EVAKILMDYYQSIN 395 (396)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccC
Confidence 99999999999875
No 5
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=100.00 E-value=1.9e-116 Score=949.83 Aligned_cols=385 Identities=28% Similarity=0.439 Sum_probs=367.1
Q ss_pred CcCCCCccccccccCc-hhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCee
Q 011745 65 LIEPDGGVLVDLVVPE-SERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIV 143 (478)
Q Consensus 65 l~~phGg~Lv~l~v~~-~~~~~l~~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w 143 (478)
|+.||||+|++|+|++ +++++++++|++||+|+||+++++|||||++||||||+|||+++||+||+ ++|||+||++
T Consensus 2 ~~~phgg~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~l~~G~~sPl~gfm~~~d~~~v~--~~~~l~~g~~- 78 (573)
T 1m8p_A 2 ANAPHGGVLKDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADYDRVC--EDNRLADGNV- 78 (573)
T ss_dssp CSCCSTTSCCCHHHHTSTTHHHHHHHHTTSCEEEECHHHHHHHHHHHTSTTTTCCEECCHHHHHHHH--HHSBCTTSCB-
T ss_pred CCCCCCCcccccccCchHHHHHHHHHhccCCeEEeCHHHHHHHHHHhcCCcCCCcccCCHHHHHHHH--HhCcCCCCCC-
Confidence 5689999999999999 89999999999999999999999999999999999999999999999999 7999999987
Q ss_pred ccceeeEeccCHHHHhhc--CCCCeEEEeC-CCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEE
Q 011745 144 NMSLPIVLAIDDETKERI--GSTTNVALLG-PTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLV 220 (478)
Q Consensus 144 ~wpiPItL~V~~e~a~~l--~~G~~vaL~d-~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~v 220 (478)
|||||||+|+++++++| ++|++|+|+| ++|+++|+|+|+|+|++||++||++||| +|++||||++++.+.|+|+|
T Consensus 79 -~~~Pi~l~v~~~~~~~l~~~~g~~v~L~~~~~g~~~a~l~v~e~~~~dk~~~~~~v~g-~~~~hP~v~~~~~~~g~~~v 156 (573)
T 1m8p_A 79 -FSMPITLDASQEVIDEKKLQAASRITLRDFRDDRNLAILTIDDIYRPDKTKEAKLVFG-GDPEHPAIVYLNNTVKEFYI 156 (573)
T ss_dssp -CCSCCCCEECHHHHHHTTCCTTCEEEEEETTTTEEEEEEEESCCCCCCHHHHHHHTSC-CCSSTHHHHHHHHTSCSEEC
T ss_pred -cceeEEEeCCHHHHHhhccCCCCEEEEEecCCCeEEEEEEeeeeecCCHHHHHHHHhC-CCCCCccHHHHHhccCCEEE
Confidence 79999999999999999 9999999998 8999999999999999999999999999 99999999999865599999
Q ss_pred eeeEEEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCC
Q 011745 221 GGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF 300 (478)
Q Consensus 221 gG~v~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~ 300 (478)
||+|+++++|.|+ +|++||+||+|+|+.|+++||++|||||||||+|||||+|++.|+ .+. +++|||||++|+
T Consensus 157 ~G~~~~l~~~~~~-~~~~~~~tp~e~r~~~~~~gw~~v~afqtrnP~Hr~H~~l~~~a~---~~~---~~~llv~pl~g~ 229 (573)
T 1m8p_A 157 GGKIEAVNKLNHY-DYVALRYTPAELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRAA---RSR---QANVLIHPVVGL 229 (573)
T ss_dssp CEEEEECCCCCCC-SCGGGBCCHHHHHHHHHHTTCCSEEEECCSSCCCHHHHHHHHHHH---HHT---TCEEEECCBCCC
T ss_pred EEEEEEEecCCcc-CcHhhcCCHHHHHHHHHHcCCCeEEEEeeCCCcchhhHHHHHHHH---Hhc---CCcEEEEeCCCC
Confidence 9999999998887 699999999999999999999999999999999999999987653 354 489999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCC
Q 011745 301 TKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLY 380 (478)
Q Consensus 301 tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y 380 (478)
||+||+|+++|++||+++++ +| |+++++++++|++|||||||||+|||++|||||||||||||||||||+++++.+||
T Consensus 230 ~k~~di~~~~R~~~~~~~~~-~~-p~~~v~l~~~p~~m~~agprea~~ha~ir~n~G~th~ivgrdhag~g~~~~~~~~Y 307 (573)
T 1m8p_A 230 TKPGDIDHFTRVRAYQALLP-RY-PNGMAVLGLLGLAMRMGGPREAIWHAIIRKNHGATHFIVGRDHAGPGSNSKGEDFY 307 (573)
T ss_dssp CCTTCHHHHHHHHHHHHHGG-GS-STTSEEECBBCCCCCCCHHHHHHHHHHHHHHHTCSEEEECTTTTCCCCCTTCCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHH-hC-CCCcEEEEecCchhhccCchHHHHHHHHHHHCCCCeEEECCCCCCCCCCCCCcccC
Confidence 99999999999999999996 44 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHhhcCCCcceeeEeeeEEEecccCceeec--CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHH
Q 011745 381 DPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF--DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLV 458 (478)
Q Consensus 381 ~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~--~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~ 458 (478)
++|+||+||++++++.||++++|++++||++|++|++. ||| +..++.||||+||++|++|+.+|.||++|+|+++++
T Consensus 308 ~~~~a~~i~~~~~~~l~i~~v~fd~~~y~~~~g~~i~id~~~~-~~~~~~iSgt~ir~~l~~g~~~p~w~~~~eVsr~lR 386 (573)
T 1m8p_A 308 GPYDAQHAVEKYKDELGIEVVEFQMVTYLPDTDEYRPVDQVPA-GVKTLNISGTELRRRLRSGAHIPEWFSYPEVVKILR 386 (573)
T ss_dssp CTTHHHHHHHHHHHHHCCEEEECCCCCBBTTTTBCCCSSSSCT-TSCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHH
T ss_pred CcchHHHHHHhhhhhcCceeEeccceEEEcCCCcEEecccCCC-CceeecCChHHHHHHHhccCCCCcccccccccHHHH
Confidence 99999999999987788999999999999999999986 788 678899999999999999999999999999999999
Q ss_pred HHhhhh
Q 011745 459 QYYESL 464 (478)
Q Consensus 459 ~~~~~~ 464 (478)
+++++.
T Consensus 387 e~~~~~ 392 (573)
T 1m8p_A 387 ESNPPR 392 (573)
T ss_dssp TTSCCT
T ss_pred Hhcccc
Confidence 999654
No 6
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=100.00 E-value=3.4e-114 Score=927.54 Aligned_cols=365 Identities=29% Similarity=0.493 Sum_probs=334.5
Q ss_pred HHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCeeccceeeEeccCHHHHhhcCCCCeE
Q 011745 88 TEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNV 167 (478)
Q Consensus 88 ~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w~wpiPItL~V~~e~a~~l~~G~~v 167 (478)
++|.+||+|.||+++++|||||++|+||||+|||+++||+||+ ++|||+||++ |||||||+|+++++++|++|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~dl~~l~~G~~sPl~gfm~~~d~~~v~--~~~~l~~g~~--~~~Pi~l~v~~~~~~~l~~g~~v 77 (546)
T 2gks_A 2 EKIKYLKSIQISQRSVLDLELLAVGAFTPLDRFMGEEDYRNVV--ESMRLKSGTL--FPIPITLPMEKEIAKDLKEGEWI 77 (546)
T ss_dssp --CCSSEEEECCHHHHHHHHHHHTTTTTTCCSSCCHHHHHHHH--HHSBCTTSCB--CCSCCCEEECHHHHTTCCTTCEE
T ss_pred cccccCCeEecCHHHHHHHHHHhcCCcCCccccCCHHHHHHHH--HhCcCCCCCC--cceeEEEeCCHHHHhhcCCCCEE
Confidence 5789999999999999999999999999999999999999999 7999999987 79999999999999999999999
Q ss_pred EEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEEecCCCCCCCcCcCCCCHHHHH
Q 011745 168 ALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLR 247 (478)
Q Consensus 168 aL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~d~f~~~r~tP~E~R 247 (478)
+|+|++|+++|+|+|+|+|++||++||++||||+|++||||++++. +|+|+|||+|++|++|.|+ +|++||+||+|+|
T Consensus 78 ~L~~~~g~~~a~l~v~e~~~~dk~~~~~~v~gt~~~~hp~v~~~~~-~g~~~~~G~~~~l~~~~~~-~~~~~~~tp~e~r 155 (546)
T 2gks_A 78 VLRDPKNVPLAIMRVEEVYKWNLEYEAKNVLGTTDPRHPLVAEMHT-WGEYYISGELKVIQLPKYY-DFPEYRKTPKQVR 155 (546)
T ss_dssp EEECTTCCEEEEEECCEEEECCHHHHHHHHHSCCCTTSHHHHHHTT-SCSEEEECCEEESCCCCCC-SCGGGBCCHHHHH
T ss_pred EEECCCCeeEEEEEeceeecCCHHHHHHHHhCCCCCCCcchHHHhh-cCCEEEEEEEEEeecCCcC-CcHhhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999875 6999999999999998887 6999999999999
Q ss_pred HHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCC
Q 011745 248 KEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPE 327 (478)
Q Consensus 248 ~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~ 327 (478)
+.|+++||++|||||||||+|||||+|++.|++ +. +++|||||++|+||+||+|+++|++||+++++ +|||++
T Consensus 156 ~~~~~~gw~~v~afqtrnP~Hr~H~~l~~~a~~---~~---~~~llv~p~~g~~k~~di~~~~R~~~~~~~~~-~~~p~~ 228 (546)
T 2gks_A 156 EEIKSLGLDKIVAFQTRNPMHRVHEELTKRAME---KV---GGGLLLHPVVGLTKPGDVDVYTRMRIYKVLYE-KYYDKK 228 (546)
T ss_dssp HHHHHHTCSCEEEECCSSCCCHHHHHHHHHHHH---HH---TSEEEECCBCSBCCTTSCCHHHHHHHHHHHHH-HHSCTT
T ss_pred HHHHHcCCCcEEEEecCCCCcHHHHHHHHHHHH---hc---CCcEEEEeCcCCCCCCCCCHHHHHHHHHHHHH-hcCCCC
Confidence 999999999999999999999999999876543 44 48999999999999999999999999999996 799999
Q ss_pred ceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEE
Q 011745 328 TTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAA 407 (478)
Q Consensus 328 ~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~ 407 (478)
+++++++|++|||||||||+||||||||||||||||||||||||+++++.+|||+|+||+||++++++.||++++|++++
T Consensus 229 ~v~~~~~p~~m~~agprea~~ha~ir~n~G~th~ivgrdhag~g~~~~~~~~Y~~~~a~~~~~~~~~~lgi~~v~fd~~~ 308 (546)
T 2gks_A 229 KTILAFLPLAMRMAGPREALWHGIIRRNYGATHFIVGRDHASPGKDSKGKPFYDPYEAQELFKKYEDEIGIKMVPFEELV 308 (546)
T ss_dssp TEEECBBCCBCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCCBCTTSCBSSCTTHHHHHHHHHHHHHTCEEEECCCCE
T ss_pred cEEEeecCchhhccCchHHHHHHHHHHhCCCCeEEECCCCCCCCCCCCCcccCCcchHHHHHHhcccccCceEEeccceE
Confidence 99999999999999999999999999999999999999999999998999999999999999999877889999999999
Q ss_pred EecccCceeec--CCCCCccccccCHHHHHHH-HHCCCCCCCCCCchhHHHHHHHHhhhhh
Q 011745 408 YDTVEKKMAFF--DPSRAKDFLFISGTKMRTF-ARSGENPPDGFMCPGGWKVLVQYYESLQ 465 (478)
Q Consensus 408 Y~~~~~~~~~~--~p~~~~~~~~iSGT~vR~~-L~~G~~pP~~F~rPeV~~iL~~~~~~~~ 465 (478)
||++|++|++. |||+++.++.||||+||++ |++|+.||+||+||||+++|+++|++..
T Consensus 309 y~~~~g~~i~id~~~~~~~~~~~iSgt~iR~~~L~~g~~~p~~~~r~eV~~~lr~~~~~~~ 369 (546)
T 2gks_A 309 YVPELDQYVEINEAKKRNLKYINISGTEIRENFLKQGRKLPEWFTRPEVAEILAETYVPKH 369 (546)
T ss_dssp EETTTTEEECSCC---------------CTHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGG
T ss_pred EEcCCCeEEeeeccCCCCceeeecchhhhhhhhhcCCCCCCccccchhHHHHHHHhhcccc
Confidence 99999999986 6886778999999999999 9999999999999999999999997654
No 7
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=100.00 E-value=3.3e-114 Score=929.26 Aligned_cols=361 Identities=22% Similarity=0.287 Sum_probs=323.4
Q ss_pred cCCcCCCCccccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCe
Q 011745 63 SSLIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSI 142 (478)
Q Consensus 63 ~~l~~phGg~Lv~l~v~~~~~~~l~~~a~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~ 142 (478)
++|+.||||+|++| |+++++++++++|++||+|+||+++++|||||++|+||||+|||+++||+||+ ++|||+||++
T Consensus 3 ~~~~~phgg~l~~~-~~~~~~~~~~~~a~~~~~~~l~~~~~~dlell~~G~~sPl~gfm~~~d~~~v~--~~~~l~~g~~ 79 (552)
T 3cr8_A 3 NQLIEPYGGTLVNL-IDPEKREALKHEALSLPSLDLDWQQQCELEMLMTGAYSPLTGFMTRAQCARVE--SAQQLDDGSF 79 (552)
T ss_dssp CCCCCCGGGSCCCC-BCGGGHHHHHHHHHTSCEEECCHHHHHHHHHHHHTTTTTCCEECCHHHHHHHH--HHCBCTTCCB
T ss_pred CCCCCCCCCccccC-CChHHHHHHHHHhccCCeEecCHHHHHHHHHHhcCCccCCcccCCHHHHHHHH--HhCcCCCCCC
Confidence 35789999999999 99999999999999999999999999999999999999999999999999999 7999999987
Q ss_pred eccceeeEeccCHHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEee
Q 011745 143 VNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGG 222 (478)
Q Consensus 143 w~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG 222 (478)
|||||||+|+++++++|++|++|+|+|++|+++|+|+|+|+|++| |+|+|||
T Consensus 80 --~~~Pi~l~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~d--------------------------g~~~v~G 131 (552)
T 3cr8_A 80 --WPSPITLTSRDRALADRRPGERLALRDGEGYMLAILTLSDVWKDG--------------------------ERWHLAG 131 (552)
T ss_dssp --CCSCCCEEECCGGGTTCCTTCEEEEECTTSCEEEEEEEEEEEEET--------------------------TEEEEEE
T ss_pred --cceEEEEeCCHhHhhccCCCCEEEEECCCCcEEEEEEEEEEEeeC--------------------------CCEEEEE
Confidence 799999999999999999999999999999999999999999997 8999999
Q ss_pred eEEEecCCCCCCCcCcCCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC
Q 011745 223 DLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK 302 (478)
Q Consensus 223 ~v~~l~~~~~~d~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK 302 (478)
+|+++++|.|+ +|++||+||+|+|+.|+++||++|||||||||+|||||++++++ ++|.+ ++|||||++|+||
T Consensus 132 ~v~~~~~~~~~-~~~~~~~tp~e~r~~~~~~gw~~v~afqtrnp~Hrah~~~~~~~---~~~~~---~~lll~pl~g~~k 204 (552)
T 3cr8_A 132 EVEGAALPPHP-DFVSLRATPAELRALFVRRGWRRIIAWQARQPMHRAQYEFCLKS---AIENE---ANLLLHPQVGGDI 204 (552)
T ss_dssp EEEESCCCCCC-TTTTTBCCHHHHHHHHHHTTCCSEEEECCSSCCCHHHHHHHHHH---HHHTT---CEEEECCBCCCCT
T ss_pred EEEEEecCCcC-CchhhcCCHHHHHHHHHhcCCCceEEEecCCCCchHHHHHHHHH---HHhcC---CeEEEEeccCCCC
Confidence 99999988887 69999999999999999999999999999999999999998765 34664 8999999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCC
Q 011745 303 ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDP 382 (478)
Q Consensus 303 ~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~ 382 (478)
+||||+++||+||+++++ +| |+++++|+++|++|||||||||+||||+|||||||||||||||||||+++++.+|||+
T Consensus 205 ~~d~~~~~r~~~~~~~~~-~~-p~~~~~l~~~p~~m~~agprea~~ha~~r~n~G~th~ivGrdhag~g~~~~~~~~Y~~ 282 (552)
T 3cr8_A 205 TEAPAYFGLVRSFLAIRD-RF-PAATTQLSLLPAPPPEASGRALLLRAIVARNFGCSLLIAGGEHQPDGGDCRRGEDLTQ 282 (552)
T ss_dssp TTCTTHHHHHHHHHHHGG-GS-CGGGEEECBBCSCCCCSCSHHHHHHHHHHHHHTCSEEEC-------------------
T ss_pred CCCCCHHHHHHHHHHHHH-hC-CCccEEEeecchhhcccCcHHHHHHHHHHHhCCCCeeeeCCCCCCCCCCCCccccCCc
Confidence 999999999999999996 45 9999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhhcCCCcceeeEeeeEEEecccCceeec--CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 383 DHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF--DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 383 ~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~--~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
|+||+||++++++.+|++++|++++||++|++|++. ||| ++++..||||+||++|++|+.+|.||++|+|+++++++
T Consensus 283 ~~a~~i~~~~~~~l~i~pv~f~~~~y~~~~g~~~~~d~~~~-~~~~~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~ 361 (552)
T 3cr8_A 283 NRVDPSVAERAEKIGVRLIAYPRMVYVEDRAEHLPEAEAPQ-GARLLTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQ 361 (552)
T ss_dssp ---CCSSHHHHHHHTCEEECCCCEEEEGGGTEEEEGGGSCT-TCCEECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHH
T ss_pred chHHHHHHhhhhhcCCeeeeccceEEecCCCeEEecccCCC-CcccccCCHHHHHHHHhcCCCCCccccccchhhhhhhh
Confidence 999999999988889999999999999999999996 898 57899999999999999999999999999999999998
Q ss_pred hhhh
Q 011745 461 YESL 464 (478)
Q Consensus 461 ~~~~ 464 (478)
++..
T Consensus 362 ~~~~ 365 (552)
T 3cr8_A 362 TPPR 365 (552)
T ss_dssp SCCG
T ss_pred cccc
Confidence 8643
No 8
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=100.00 E-value=2.6e-110 Score=855.23 Aligned_cols=343 Identities=28% Similarity=0.442 Sum_probs=328.1
Q ss_pred cCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCCeecCCCCeeccceeeEeccCHHHHhhcCCCCeEEEe
Q 011745 91 ESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALL 170 (478)
Q Consensus 91 ~~lp~i~l~~~~l~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~w~wpiPItL~V~~e~a~~l~~G~~vaL~ 170 (478)
++||+|.||+++++|||||++|+||||+||||++||+||+ ++|||+||++ |||||||+|+++ ++|++|++|+|
T Consensus 3 ~~lp~i~l~~~~~~dlell~~G~fsPL~GfM~~~d~~~v~--~~~rl~~G~~--wpiPi~L~v~~~--~~l~~g~~v~L- 75 (349)
T 1v47_A 3 ETLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVA--HEMRLPTGEV--WTIPILLQFREK--PRVGPGNTVAL- 75 (349)
T ss_dssp -CCCEEECCHHHHHHHHHHHTTTTTTCCSBCCHHHHHHHH--HHSBCTTSCB--CCSCCCEEESSC--CSCCTTCEEEE-
T ss_pred ccCceeecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--cCeEEEecCChh--hcCCCCCEEEE-
Confidence 5699999999999999999999999999999999999999 7999999988 799999999988 78999999999
Q ss_pred CCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHH
Q 011745 171 GPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEF 250 (478)
Q Consensus 171 d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~d~f~~~r~tP~E~R~~f 250 (478)
|++|+++|+|+|+|+|++||++||++||||+|++||||++++ +.|+|+|||+|++++ + ++|++||+||+|+|+.|
T Consensus 76 ~~~g~~~a~l~v~e~~~~dk~~~~~~v~gt~d~~HPgv~~~~-~~g~~~vgG~v~~l~---~-~~f~~~~~tP~e~r~~f 150 (349)
T 1v47_A 76 LHGGERVALLHVAEAYELDLEALARAVFGTDSETHPGVARLY-GKGPYALAGRVEVLK---P-RPRTPLEKTPEEVRAFF 150 (349)
T ss_dssp EETTEEEEEEECCEEEECCHHHHHHHHHSCCCTTSHHHHHHH-HTCSEEEEBCEEESS---C-CCCCTTCCCHHHHHHHH
T ss_pred ccCCeeEEEEEeeeeeccCHHHHHHHHhCCCCcCCcchHHHh-hcCCEEEEEEEEEEE---c-CCchhhcCCHHHHHHHH
Confidence 799999999999999999999999999999999999999987 589999999999998 3 48999999999999999
Q ss_pred HhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 011745 251 DNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (478)
Q Consensus 251 ~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~ 330 (478)
+++||++|||||||||+||||++|++.|+ +. .+++||||++|++|+||+|+++|++||+++++ +|||+++++
T Consensus 151 ~~~gw~~VvafqTrNPiHrgH~~l~~~al----e~---~d~vll~P~~g~~K~~d~~~~~R~~~~~~~i~-~~~p~~~~~ 222 (349)
T 1v47_A 151 RQRGWRKVVAFQTRNAPHRAHEYLIRLGL----EL---ADGVLVHPILGAKKPDDFPTEVIVEAYQALIR-DFLPQERVA 222 (349)
T ss_dssp HHTTCCSEEEEEESSCCCHHHHHHHHHHH----HH---SSEEEEEEBCSCCCTTSCCHHHHHHHHHHHHH-HHSCGGGEE
T ss_pred HhcCCCeEEEeecCCCCchHHHHHHHHHH----Hh---CCcEEEEECCCCCCCCCCCHHHHHHHHHHHHh-hcCCCcceE
Confidence 99999999999999999999999997664 43 38999999999999999999999999999996 789999999
Q ss_pred EEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEec
Q 011745 331 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDT 410 (478)
Q Consensus 331 l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~ 410 (478)
++++|++||||||||++||||+|||||||||||||||||+| +||++++||+||++++ +.||++++|+.++||+
T Consensus 223 l~~~p~~m~~aGPreailhaiirkn~G~t~fIVGrDhag~~------~~y~~~~aq~i~~~~~-~l~i~~v~~~~~~Y~~ 295 (349)
T 1v47_A 223 FFGLATPMRYAGPKEAVFHALVRKNFGATHFLVGRDHAGVG------DFYDPYAAHRIFDRLP-PLGIEIVKVGAVFHCP 295 (349)
T ss_dssp ECCBCSCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCST------TCSCTTHHHHGGGGSC-CCSSEEEECCCEEEET
T ss_pred EEechHHhhcCCcHHHHHHHHHHHcCCCcEEEECcCCCCcc------cccCcccHHHHHHhhh-hcCceEEeccccEEcc
Confidence 99999999999999999999999999999999999999999 7999999999999998 7899999999999999
Q ss_pred ccCceeec--CCC-CCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 411 VEKKMAFF--DPS-RAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 411 ~~~~~~~~--~p~-~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
+|+.|++. ||| ++++++.||||+||+||++|+.||+|||+|||+++|++|
T Consensus 296 ~~~~~~~~~~~p~~~~~~~~~ISgT~iR~~L~~G~~pp~~f~~peV~~~I~~~ 348 (349)
T 1v47_A 296 LCGGIASERTCPEGHREKRTAISMTKVRALLREGKAPPSELVRPELLPILRRG 348 (349)
T ss_dssp TTTEEEETTTSCGGGGGGCEECCHHHHHHHHHTTCCCCTTTSCGGGHHHHHTT
T ss_pred cCCceEEccccCccCCCcccccCHHHHHHHHHCcCCCchhcCCHHHHHHHHhh
Confidence 99999986 898 888999999999999999999999999999999999986
No 9
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=98.55 E-value=1.7e-06 Score=77.27 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=87.9
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC--CCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCccc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA--DDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY 340 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~--~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mry 340 (478)
|.||+|+||..|++.|.+ .. +.+++-|.....|+ ..++.+.|++-.+..+. + +| .+.+. +..
T Consensus 8 sFdp~H~GH~~l~~~a~~----~~---d~v~v~~~~~p~k~~~~~~~~~~R~~ml~~a~~-~-~~--~v~v~--~~e--- 71 (160)
T 1od6_A 8 SFDPLTNGHLDVIQRASR----LF---EKVTVAVLENPSKRGQYLFSAEERLAIIREATA-H-LA--NVEAA--TFS--- 71 (160)
T ss_dssp CCTTCCHHHHHHHHHHHH----HS---SEEEEEEECC-----CCSSCHHHHHHHHHHHTT-T-CT--TEEEE--EEC---
T ss_pred eeCCCCHHHHHHHHHHHH----HC---CEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHhc-C-CC--CEEEE--ecC---
Confidence 899999999999876644 32 33444344444454 57899999998887664 2 22 34433 322
Q ss_pred CChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhH-HHHhhcCCCcceeeEeeeEEEecccCceeecC
Q 011745 341 AGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKK-VLSMALGLEKLNILPFRVAAYDTVEKKMAFFD 419 (478)
Q Consensus 341 AGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~-i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~~ 419 (478)
| -..+ .+ +.+++.+||+|-|..| +|- +..+- .+... ...++..+.+ . .+
T Consensus 72 -~---~~~~-~l-~~l~~~~~v~G~d~~~--------~~~--~~~~~~~~~r~-~~~~~~~i~~------~-------~~ 121 (160)
T 1od6_A 72 -G---LLVD-FV-RRVGAQAIVKGLRAVS--------DYE--YELQMAHLNRQ-LYPGLETLFI------L-------AA 121 (160)
T ss_dssp -S---CHHH-HH-HHTTCSEEEEEECTTS--------CHH--HHHHHHHHHHH-HTTTCEEEEE------E-------CC
T ss_pred -c---hHHH-HH-HHcCCCEEEEeCCccc--------chH--HHHHHHHhCcC-CCCCCCEEEE------e-------CC
Confidence 3 1222 33 7799999999988432 120 11100 11111 0012222221 0 01
Q ss_pred CCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHhh
Q 011745 420 PSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYYE 462 (478)
Q Consensus 420 p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~~ 462 (478)
+ ....||+|++|+++++|.. ...|.+|+|++.|.+.|+
T Consensus 122 ~----~~~~ISST~IR~~l~~G~~-~~~~vP~~V~~~I~~~~~ 159 (160)
T 1od6_A 122 T----RYSFVSSTMVKEIARYGGD-VSKLVPPATLRALKAKLG 159 (160)
T ss_dssp G----GGTTCCHHHHHHHHHTTCC-CTTTSCHHHHHHHHHHTT
T ss_pred C----CCCcccHHHHHHHHHcCCC-hhHHCCHHHHHHHHHHhc
Confidence 1 2236999999999999986 467999999999998774
No 10
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=98.31 E-value=2.9e-05 Score=69.05 Aligned_cols=148 Identities=20% Similarity=0.197 Sum_probs=88.9
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccC
Q 011745 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA 341 (478)
Q Consensus 262 QTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryA 341 (478)
=|.||+|+||..|++.| .+.. +-+++-|...+.|...++.+.|++-.+..+. + +| .+.+. +..
T Consensus 8 GsFDpvH~GH~~l~~~a----~~~~---d~v~v~~~~~p~k~~~~~~~~R~~ml~~a~~-~-~~--~v~v~--~~~---- 70 (158)
T 1qjc_A 8 GTFDPITNGHIDIVTRA----TQMF---DHVILAIAASPSKKPMFTLEERVALAQQATA-H-LG--NVEVV--GFS---- 70 (158)
T ss_dssp ECCTTCCHHHHHHHHHH----HTTS---SEEEEEEESCCSSCCSSCHHHHHHHHHHHTT-T-CT--TEEEE--EEC----
T ss_pred ecCCCCCHHHHHHHHHH----HHhC---CEEEEEECCCCCCCCCCCHHHHHHHHHHHHh-c-CC--CeEEc--ccc----
Confidence 38999999999998755 3443 3445545555556667899999998887664 2 33 34433 322
Q ss_pred ChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHH--HHhhcCCCcceeeEeeeEEEecccCceeecC
Q 011745 342 GPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKV--LSMALGLEKLNILPFRVAAYDTVEKKMAFFD 419 (478)
Q Consensus 342 GPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i--~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~~ 419 (478)
+ .+...+ +.+++.+||+|-|... +-..-..+ +...-+ .+++.+.+ .
T Consensus 71 ~----~~~~~l-~~l~~~~~v~G~d~~~-----------~~~~~~~~~~~~r~~~-~~~~~i~~---------------~ 118 (158)
T 1qjc_A 71 D----LMANFA-RNQHATVLIRGLRAVA-----------DFEYEMQLAHMNRHLM-PELESVFL---------------M 118 (158)
T ss_dssp S----CHHHHH-HHTTCCEEEEECCTTC-----------CHHHHHHHHHHHHHHC-TTSEEEEE---------------C
T ss_pred h----HHHHHH-HHcCCCEEEEeccchh-----------hhHHHHHHHHhCccCC-CCCCEEEE---------------E
Confidence 1 122233 6679999999977421 11111111 111000 01221111 1
Q ss_pred CCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHh
Q 011745 420 PSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYY 461 (478)
Q Consensus 420 p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~ 461 (478)
+ ......||.|++|+++++|.. .+.+.+|+|++.|.+.+
T Consensus 119 ~--~~~~~~iSST~IR~~i~~g~~-~~~~vP~~V~~yI~~~~ 157 (158)
T 1qjc_A 119 P--SKEWSFISSSLVKEVARHQGD-VTHFLPENVHQALMAKL 157 (158)
T ss_dssp C--CGGGTTCCHHHHHHHHHTTCC-CGGGSCHHHHHHHHHHH
T ss_pred C--CCCCCccCHHHHHHHHHcCCC-hhHhCCHHHHHHHHHhh
Confidence 1 112236999999999999986 45799999999998764
No 11
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=98.18 E-value=3.7e-05 Score=70.66 Aligned_cols=150 Identities=14% Similarity=0.117 Sum_probs=93.4
Q ss_pred EeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCC---CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 011745 259 FAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF---TKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (478)
Q Consensus 259 vaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~---tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP 335 (478)
+..=|.||+|+||..|++.|. +.. +-+.+-+..+. ++...++.+.|++-.+..+.+.-++.+.+. +++
T Consensus 7 i~~G~Fdp~H~GH~~l~~~a~----~~~---d~v~v~v~~~~~p~~~~~~~~~~~R~~~~~~a~~~~~~~~~~v~--v~~ 77 (181)
T 1ej2_A 7 LLVGRMQPFHRGHLQVIKSIL----EEV---DELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASRYY--IIP 77 (181)
T ss_dssp EEEECCTTCCHHHHHHHHHHT----TTC---SEEEEEECSTTCCSSSSSCSCHHHHHHHHHHHHHHTTCCGGGEE--EEE
T ss_pred EEEEEcCCcCHHHHHHHHHHH----HhC---CeeEEEECCCCCCcCCCCCCCHHHHHHHHHHHHhhCCCCCCcEE--EEe
Confidence 333499999999999987553 332 33333221221 245578999999999887763212223333 445
Q ss_pred CCcccCChhHHHHHHHHHH-hcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCc
Q 011745 336 SPMHYAGPTEVQWHAKARI-NAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKK 414 (478)
Q Consensus 336 ~~mryAGPREAllHAivRk-NyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~ 414 (478)
....+. ...|+..+++ .++|+.+++|||. .++++.. .++.++..
T Consensus 78 ~d~~~~---~~~w~~~~~~l~~~~~~~v~gr~~-----------------~~~~~~~----~~i~~~~~----------- 122 (181)
T 1ej2_A 78 VQDIEC---NALWVGHIKMLTPPFDRVYSGNPL-----------------VQRLFSE----DGYEVTAP----------- 122 (181)
T ss_dssp CCCCSC---HHHHHHHHHHHSCCCSEEECCCHH-----------------HHHHHHH----TTCCEECC-----------
T ss_pred cCccCC---HHHHHHHHHHHCCCCCEEEECCHH-----------------HHHHHHh----CCeEEEec-----------
Confidence 544442 4578886665 4588999999873 1233321 12333321
Q ss_pred eeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 415 MAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 415 ~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
|. .+...||+|.+|+++++|..+ ..+.+|+|++.|.+.
T Consensus 123 -----~~--~~~~~ISST~IR~~l~~G~~i-~~lvP~~V~~yI~~~ 160 (181)
T 1ej2_A 123 -----PL--FYRDRYSGTEVRRRMLDDGDW-RSLLPESVVEVIDEI 160 (181)
T ss_dssp -----CC--SSTTTSSHHHHHHHHHHTCCC-GGGSCHHHHHHHHHT
T ss_pred -----CC--CccCcCcHHHHHHHHHcCCCh-hHhCCHHHHHHHHHc
Confidence 11 122359999999999999864 578999999999764
No 12
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=98.13 E-value=2.7e-05 Score=73.34 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=101.8
Q ss_pred EeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC-CCCC-CCCChHHHHHHHHHHHHcCCCCCCceEEEecCC
Q 011745 259 FAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-FTKA-DDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPS 336 (478)
Q Consensus 259 vaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG-~tK~-~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~ 336 (478)
+..=|-||+|.||..+++.|.+.+ +. +.+++-|... ..|+ .-++.+.|++-.+.+++ + .| . +.+.+.
T Consensus 7 i~~GsFdPiH~GH~~l~~~a~~~~---~~--d~v~~~~~~~~~~k~~~~~~~~~R~~ml~~a~~-~-~~--~--v~v~~~ 75 (213)
T 1k4m_A 7 LFGGTFDPVHYGHLKPVETLANLI---GL--TRVTIIPNNVPPHRPQPEANSVQRKHMLELAIA-D-KP--L--FTLDER 75 (213)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHH---TC--SCEEEEECSSCTTSCCCSSCHHHHHHHHHHHHT-T-CT--T--EEECCH
T ss_pred EEEeCcCCCCHHHHHHHHHHHHHc---CC--CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHhc-c-CC--C--EEEeHH
Confidence 333499999999999998775533 21 2334444433 2342 46899999999987775 2 23 2 235666
Q ss_pred CcccCChh--HHHHHHHHHHhcCCc---eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhc----CCCcceeeEee-e-
Q 011745 337 PMHYAGPT--EVQWHAKARINAGAN---FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAL----GLEKLNILPFR-V- 405 (478)
Q Consensus 337 ~mryAGPR--EAllHAivRkNyGcT---HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~----~~~~i~i~~f~-~- 405 (478)
....+||. .-.+.. +++.||++ .||+|-|..-=- ..+|+ .++|++... .-.|.....+. +
T Consensus 76 e~~~~~~s~t~~~l~~-l~~~~~~~~~~~~i~G~D~~~~l-----~~W~~---~~~i~~~~~~vv~~R~~~~~~~~~~~~ 146 (213)
T 1k4m_A 76 ELKRNAPSYTAQTLKE-WRQEQGPDVPLAFIIGQDSLLTF-----PTWYE---YETILDNAHLIVCRRPGYPLEMAQPQY 146 (213)
T ss_dssp HHHCSSCCCHHHHHHH-HHHHHCTTSCEEEEEEHHHHHHG-----GGSTT---HHHHHHHCEEEEECCTTCCSSCSSHHH
T ss_pred HhcCCCCCcHHHHHHH-HHHHhCCCCcEEEEEehhhhhhh-----hccCC---HHHHHhhCcEEEEECCCCchhhhhhHH
Confidence 66666653 233333 77888999 899999865311 02333 456665321 00000000000 0
Q ss_pred -EEEe----c--------ccCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 406 -AAYD----T--------VEKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 406 -~~Y~----~--------~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
.++. + ..+.+... +. ....||+|.||+++++|.. ...+.+|+|++.|.+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~i~~~-~~---~~~~iSST~IR~~i~~g~~-i~~lvP~~V~~yI~~~ 209 (213)
T 1k4m_A 147 QQWLEDHLTHNPEDLHLQPAGKIYLA-ET---PWFNISATIIRERLQNGES-CEDLLPEPVLTYINQQ 209 (213)
T ss_dssp HHHHHHHBCSCTTHHHHSSSCCEEEE-CC---CCCCCCHHHHHHHHHTTCC-CTTTSCHHHHHHHHHH
T ss_pred HHHHhhhhcchhhhhhhccCCeEEEE-eC---CcccCCHHHHHHHHHcCCC-chhcCCHHHHHHHHHc
Confidence 0000 0 00111111 11 1357999999999999987 5678999999988763
No 13
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=98.12 E-value=0.00011 Score=68.11 Aligned_cols=171 Identities=18% Similarity=0.159 Sum_probs=95.0
Q ss_pred EEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcccc-CCCC--CCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 011745 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG-GFTK--ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (478)
Q Consensus 258 VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Plv-G~tK--~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~il 334 (478)
++..=+-||+|+||..+++.|.+.+ + .+.+++-|.. -..| ..-++.+.|++-.+.+++ + +| . +.+.
T Consensus 10 ~v~~GsFdp~H~GH~~l~~~a~~~~---~--~d~v~~~~~~~~~~k~~~~~~~~~~R~~ml~~a~~-~-~~-~---v~v~ 78 (194)
T 1kam_A 10 GIFGGTFDPPHNGHLLMANEVLYQA---G--LDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQ-S-NP-S---FKLE 78 (194)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHHT---T--CSEEEEEECCCC---------CHHHHHHHHHHHHT-T-CT-T---EEEC
T ss_pred EEEEeccccccHHHHHHHHHHHHHh---C--CCEEEEEECCCCCCcCCcCCCCHHHHHHHHHHHHc-C-CC-C---eEEe
Confidence 3444599999999999987765422 2 1334443331 1233 356899999999987775 2 23 2 3356
Q ss_pred CCCcccCChhHHH-HHHHHHHhcCCc--eeeecCCCCC-CCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEec
Q 011745 335 PSPMHYAGPTEVQ-WHAKARINAGAN--FYIVGRDPAG-MGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDT 410 (478)
Q Consensus 335 P~~mryAGPREAl-lHAivRkNyGcT--HfIVGRDHAG-vG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~ 410 (478)
+.....+||.=.+ .-..+++.|.-+ .||+|-|... .. .+| +.++|++... ++-+....+..
T Consensus 79 ~~e~~~~~~~~t~~~l~~l~~~~p~~~~~~v~G~D~~~~~~------~W~---~~e~i~~~~~------~~v~~R~g~~~ 143 (194)
T 1kam_A 79 LVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLP------KWY---KLDELLNLIQ------FIGVKRPGFHV 143 (194)
T ss_dssp CGGGSTTCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCC------CCH---HHHHHHHHSE------EEEEECSSCCC
T ss_pred HHHhcCCCCCChHHHHHHHHHHCCCCcEEEEEecchhhhhc------ccc---CHHHHHHhCc------EEEEECCCcch
Confidence 7777777763221 222344555444 8999999753 21 233 3466765321 11111100000
Q ss_pred cc-CceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHH
Q 011745 411 VE-KKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQ 459 (478)
Q Consensus 411 ~~-~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~ 459 (478)
.- ..+..... . ...||.|+||+++++|.. -..+.+|.|++.|.+
T Consensus 144 ~l~~~i~~~~~-~---~~~ISST~IR~~i~~g~~-~~~lvP~~V~~yI~~ 188 (194)
T 1kam_A 144 ETPYPLLFADV-P---EFEVSSTMIRERFKSKKP-TDYLIPDKVKKYVEE 188 (194)
T ss_dssp CCSSCCEEEEC-C---CBCCCHHHHHHHHHHTCC-CTTTSCHHHHHHHHH
T ss_pred hcCCCEEEeCC-C---CCCcCHHHHHHHHHcCCC-chhhCCHHHHHHHHH
Confidence 00 01111111 1 237999999999999987 456899999998876
No 14
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=98.09 E-value=7.3e-05 Score=67.56 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=88.7
Q ss_pred EEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCC
Q 011745 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSP 337 (478)
Q Consensus 258 VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~ 337 (478)
++..=|-||+|+||..|++.|.+ .. +-+++-|..-+.|..-++.+.|++-.+..+. + +| .+. +.+..
T Consensus 5 ~i~~GsFDpvH~GH~~li~~a~~----~~---d~v~v~~~~~p~k~~l~~~~~R~~ml~~a~~-~-~~--~v~--v~~~e 71 (169)
T 1o6b_A 5 AVCPGSFDPVTYGHLDIIKRGAH----IF---EQVYVCVLNNSSKKPLFSVEERCELLREVTK-D-IP--NIT--VETSQ 71 (169)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH----HS---SEEEEEECCCCSSCCSSCHHHHHHHHHHHHT-T-CT--TEE--EEECS
T ss_pred EEEEEeeCCCCHHHHHHHHHHHH----hC---CEEEEEECCCCccCCCCCHHHHHHHHHHHHh-c-CC--CEE--Ecccc
Confidence 33344999999999999876544 32 3344434433345567899999998887664 2 23 233 33433
Q ss_pred cccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhH-HHHhhcCCCcceeeEeeeEEEecccCcee
Q 011745 338 MHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKK-VLSMALGLEKLNILPFRVAAYDTVEKKMA 416 (478)
Q Consensus 338 mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~-i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~ 416 (478)
-| ... . -+.+++..||+|-|... +| + +..+- .+.. +...+++.+.+ .
T Consensus 72 -~~------~~~-~-l~~l~~~~~i~G~d~~~--------~~-~-~~~~~~~~~r-~~~~~~~~i~~-----~------- 119 (169)
T 1o6b_A 72 -GL------LID-Y-ARRKNAKAILRGLRAVS--------DF-E-YEMQGTSVNR-VLDESIETFFM-----M------- 119 (169)
T ss_dssp -SC------HHH-H-HHHTTCSEEEEEECSGG--------GH-H-HHHHHHHHHH-HHCTTSEEEEE-----E-------
T ss_pred -hH------HHH-H-HHHcCCCEEEEcCcccc--------ch-H-HHHHHHHHhc-cccCCCCEEEE-----E-------
Confidence 11 222 1 26789999999988542 01 0 11110 1111 11112322211 0
Q ss_pred ecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 417 FFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 417 ~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
.++ ....||+|.+|+++++|+.+ ..+.+|.|++.|.+.
T Consensus 120 -~~~----~~~~ISST~IR~~l~~G~~~-~~~vP~~V~~yi~~~ 157 (169)
T 1o6b_A 120 -ANN----QYSFLSSSIVKEVARYDGSV-SEFVPPEVELALQQK 157 (169)
T ss_dssp -CCS----TTTTCCHHHHHHHHHTTCCC-TTTSCHHHHHHHHHH
T ss_pred -CCC----CCCcCcHHHHHHHHHcCCCh-hHHCCHHHHHHHHHh
Confidence 011 12359999999999999875 468899999999875
No 15
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=97.89 E-value=0.00021 Score=65.85 Aligned_cols=148 Identities=20% Similarity=0.233 Sum_probs=87.4
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAG 342 (478)
|-||+|.||..+++.| .+.. +-+++-|..-..|..-++.+.|++-.+..++ .+| + +.+..+. |
T Consensus 11 sFDPiH~GHl~i~~~a----~~~~---d~viv~v~~~p~K~~~~~~~~R~~ml~~a~~--~~~-~-v~v~~~e------~ 73 (168)
T 3f3m_A 11 SFDPITYGHLDIIERS----TDRF---DEIHVCVLKNSKKEGTFSLEERMDLIEQSVK--HLP-N-VKVHQFS------G 73 (168)
T ss_dssp CCTTCCHHHHHHHHHH----GGGS---SEEEEEECC-----CCSCHHHHHHHHHHHTT--TCT-T-EEEEECC------S
T ss_pred EcCcCCHHHHHHHHHH----HHhC---CEEEEEEcCCCCCCCCCCHHHHHHhHHHHhc--CCC-C-EEEEEcC------C
Confidence 8999999999998654 4443 4455545544456778999999999988775 233 2 3333332 4
Q ss_pred hhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhh-HHHHhhcCC-CcceeeEeeeEEEecccCceeecCC
Q 011745 343 PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGK-KVLSMALGL-EKLNILPFRVAAYDTVEKKMAFFDP 420 (478)
Q Consensus 343 PREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq-~i~~~~~~~-~~i~i~~f~~~~Y~~~~~~~~~~~p 420 (478)
- ... ..+.++++.||.|-|-.. || +.. .+......+ .+++.+.+ . .+|
T Consensus 74 ~---tvd--~~~~l~~~~~I~G~d~~~--------d~----~~e~~~a~~~r~l~~~~e~v~l------~-------~~p 123 (168)
T 3f3m_A 74 L---LVD--YCEQVGAKTIIRGLRAVS--------DF----EYELRLTSMNKKLNNEIETLYM------M-------SST 123 (168)
T ss_dssp C---HHH--HHHHHTCCEEEEEECTTC--------CH----HHHHHHHHHHHHHCTTSEEEEE------E-------CCT
T ss_pred C---HHH--HHHHcCCCEEEEcCCchh--------hh----hHHHHHhHHhHhhCCCCcEEEE------e-------CCc
Confidence 1 111 225579999999977321 22 221 111111000 12222111 1 112
Q ss_pred CCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHhh
Q 011745 421 SRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYYE 462 (478)
Q Consensus 421 ~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~~ 462 (478)
....||+|.||++++.|..+ ..|.+|.|++.|.+.++
T Consensus 124 ----~~~~ISST~IRe~~~~g~~i-~~lvP~~V~~~i~~~~~ 160 (168)
T 3f3m_A 124 ----NYSFISSSIVKEVAAYRADI-SEFVPPYVEKALKKKFK 160 (168)
T ss_dssp ----TTTTCCHHHHHHHHHTTCCC-TTTSCHHHHHHHHHHHC
T ss_pred ----ccccccHHHHHHHHHcCCCh-hHHCCHHHHHHHHHhhc
Confidence 23359999999999999976 68999999999887764
No 16
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=97.88 E-value=4.3e-05 Score=69.96 Aligned_cols=165 Identities=14% Similarity=0.152 Sum_probs=93.5
Q ss_pred eccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccc-cCCCC--CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCC
Q 011745 261 FQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL-GGFTK--ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSP 337 (478)
Q Consensus 261 FQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Pl-vG~tK--~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~ 337 (478)
.=|-||+|+||..|++.|.+.+ + .+.+++-|. .-..| ..-++.+.|++-.+.+++ + .| . +.+.+..
T Consensus 8 ~GsFDPvH~GH~~li~~a~~~~---~--~d~v~~~~~~~~~~k~~~~~~~~~~R~~ml~~~~~-~-~~--~--v~v~~~e 76 (189)
T 2qtr_A 8 GGTFDPPHYGHLLIANEVYHAL---N--LEEVWFLPNQIPPHKQGRNITSVESRLQMLELATE-A-EE--H--FSICLEE 76 (189)
T ss_dssp EECCSSCCHHHHC-CHHHHHHT---T--CSEEEEEECSSCTTCTTSCCCCHHHHHHHHHHHHT-T-CT--T--EEECCTG
T ss_pred ecCcccccHHHHHHHHHHHHHc---C--CCEEEEEECCCCCCccCCCCCCHHHHHHHHHHHhC-C-CC--C--EEEehHH
Confidence 3489999999999988765432 2 133333343 12334 456899999998887774 2 22 2 3367888
Q ss_pred cccCChhHHHHHHHHHHhcCCce------eeecCCCC-CCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEe-
Q 011745 338 MHYAGPTEVQWHAKARINAGANF------YIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYD- 409 (478)
Q Consensus 338 mryAGPREAllHAivRkNyGcTH------fIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~- 409 (478)
...+||.=.+ . .+ +.+++.+ ||+|-|.. |.. .+| +.++|++.. .+-+++ ...|.
T Consensus 77 ~~~~~~~~~~-~-~l-~~l~~~~p~~~~~~v~G~D~~~~~~------~w~---~~~~l~~~~----~~~v~~--r~~~~~ 138 (189)
T 2qtr_A 77 LSRKGPSYTY-D-TM-LQLTKKYPDVQFHFIIGGDMVEYLP------KWY---NIEALLDLV----TFVGVA--RPGYKL 138 (189)
T ss_dssp GGSCSCCCHH-H-HH-HHHHHHCTTCEEEEEEEHHHHHHGG------GST---THHHHTTTC----EEEEEC--CTTCCC
T ss_pred hcCCCCCCHH-H-HH-HHHHHHCCCCCEEEEEehhhhhhhh------ccC---CHHHHHHhC----CEEEEE--CCCCCc
Confidence 8888875222 2 12 4455556 99998854 222 222 234444321 111111 00000
Q ss_pred cccCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHH
Q 011745 410 TVEKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQ 459 (478)
Q Consensus 410 ~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~ 459 (478)
.....+... +. ....||.|.||+++++|.. -..+.+|+|++.|.+
T Consensus 139 ~~~~~v~~~-~~---~~~~iSST~IR~~l~~g~~-~~~lvP~~V~~yI~~ 183 (189)
T 2qtr_A 139 RTPYPITTV-EI---PEFAVSSSLLRERYKEKKT-CKYLLPEKVQVYIER 183 (189)
T ss_dssp CCSSCCEEE-CC---CCCCCCHHHHHHHHHTTCC-CTTTSCHHHHHHHHH
T ss_pred cCCceEEEE-cC---CCCccCHHHHHHHHHcCCC-chhcCCHHHHHHHHH
Confidence 000011111 11 1237999999999999987 456889999999876
No 17
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=97.87 E-value=0.00022 Score=64.77 Aligned_cols=143 Identities=14% Similarity=0.104 Sum_probs=86.8
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCC---CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF---TKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~---tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
|.||+|.||..|++.| .+.. +-+.+-+-.+. +|...++.+.|++-.+.++++ +|.+ +. +++....
T Consensus 8 sFdp~H~GH~~l~~~a----~~~~---d~v~v~v~~~~~p~~~~~~~~~~~R~~m~~~~~~~--~~~~-v~--v~~~d~l 75 (168)
T 1f9a_A 8 RFQPFHKGHLEVIKKI----AEEV---DEIIIGIGSAQKSHTLENPFTAGERILMITQSLKD--YDLT-YY--PIPIKDI 75 (168)
T ss_dssp CCTTCCHHHHHHHHHH----TTTC---SEEEEEECSTTCCSSSSCCSCHHHHHHHHHHHHTT--SSCE-EE--EEECCCC
T ss_pred ecCCcCHHHHHHHHHH----HHhC---CeEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHhc--CCCc-eE--EEeeCCc
Confidence 8999999999998654 3332 33333221221 244578999999999988863 3422 22 2333333
Q ss_pred cCChhHHHHHHHHH-HhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccCceeec
Q 011745 340 YAGPTEVQWHAKAR-INAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEKKMAFF 418 (478)
Q Consensus 340 yAGPREAllHAivR-kNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~~~ 418 (478)
+. +..|+..++ ..+.|+.+++||+. + .+++.. .++.++..
T Consensus 76 ~~---~~~w~~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~----~~i~~~~~--------------- 116 (168)
T 1f9a_A 76 EF---NSIWVSYVESLTPPFDIVYSGNPL------------V-----RVLFEE----RGYEVKRP--------------- 116 (168)
T ss_dssp SC---GGGHHHHHHHHSCCCSEEECCCHH------------H-----HHHHHH----TTCEEECC---------------
T ss_pred cc---HHHHHHHHHHhccCCCEEEECcHH------------H-----HHhhhh----cCcEEEeC---------------
Confidence 32 347877554 45577777666541 1 233321 12332211
Q ss_pred CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 419 DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 419 ~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
| ..++..||+|.||+++++|.. ...|.+|.|++.|.+.
T Consensus 117 -~--~~~~~~ISST~IR~~~~~g~~-i~~lvP~~V~~yI~~~ 154 (168)
T 1f9a_A 117 -E--MFNRKEYSGTEIRRRMLNGEK-WEHLVPKAVVDVIKEI 154 (168)
T ss_dssp -C--CCSTTTSSHHHHHHHHHHTCC-CGGGSCHHHHHHHHHH
T ss_pred -C--ccccCcccHHHHHHHHHcCCC-hhHcCCHHHHHHHHHc
Confidence 1 112335999999999999986 4668999999988764
No 18
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=97.85 E-value=0.00038 Score=65.29 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=94.5
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP 335 (478)
+.++..=+-||+|+||..+++.|. +.. +-+.+-+..-..|..-++.+.|++..+.+++ .+| .+.+..+.
T Consensus 23 ki~v~~GsFDpiH~GHl~li~~A~----~~~---d~viv~v~~~p~K~~l~s~eeR~~ml~~~~~--~v~--~v~v~~f~ 91 (187)
T 3k9w_A 23 VVAVYPGTFDPLTRGHEDLVRRAS----SIF---DTLVVGVADSRAKKPFFSLEERLKIANEVLG--HYP--NVKVMGFT 91 (187)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH----HHS---SEEEEEEECCGGGCCSSCHHHHHHHHHHHHT--TCT--TEEEEEES
T ss_pred EEEEEEEeCCcCcHHHHHHHHHHH----HHC---CcEEEEEecCCccCCCCCHHHHHHHHHHHhc--cCC--cEEEEech
Confidence 445555599999999999987654 333 3333333333446667899999999998775 233 24332332
Q ss_pred CCcccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhH-HHHhhcCCCcceeeEeeeEEEecccCc
Q 011745 336 SPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKK-VLSMALGLEKLNILPFRVAAYDTVEKK 414 (478)
Q Consensus 336 ~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~-i~~~~~~~~~i~i~~f~~~~Y~~~~~~ 414 (478)
|- +. - ..+.+|+..+|+|-|-.. ||- |+.+- .+...-+ .+++.+.+ .
T Consensus 92 ------~~---~~-d-~l~~l~~~~iv~G~r~~~--------Df~--~E~~la~~nr~l~-~~ietv~l------~---- 139 (187)
T 3k9w_A 92 ------GL---LK-D-FVRANDARVIVRGLRAVS--------DFE--YEFQMAGMNRYLL-PDVETMFM------T---- 139 (187)
T ss_dssp ------SC---HH-H-HHHHTTCSEEEEECCTTS--------CHH--HHHHHHHHHHHHC-TTCEEEEE------C----
T ss_pred ------hh---HH-H-HHHHcCCCEEEECCCccc--------ccc--hHHHHHHHHHHhC-CCCcEEEE------e----
Confidence 21 11 1 235689999999955221 221 22210 1111101 12333322 1
Q ss_pred eeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHhh
Q 011745 415 MAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYYE 462 (478)
Q Consensus 415 ~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~~ 462 (478)
. ......||+|.||+.++.|..+ ..|.+|.|++.|.+-+.
T Consensus 140 ---~----~~~~~~ISST~IRe~~~~g~~i-~~lVP~~V~~~i~~k~~ 179 (187)
T 3k9w_A 140 ---P----SDQYQFISGTIVREIAQLGGDV-SKFVFPSVEKWLTEKVA 179 (187)
T ss_dssp ---C----CGGGTTCCHHHHHHHHHTTCCC-TTTSCHHHHHHHHHHHH
T ss_pred ---c----ccccccccHHHHHHHHHcCCCh-hHHCCHHHHHHHHHHhc
Confidence 1 1245689999999999999976 77999999999988764
No 19
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=97.67 E-value=0.00016 Score=65.97 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=90.4
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAG 342 (478)
|-||+|.||..++++| .+.+ +-+++-+.....|..-++.+.|++..+..++ ..| .+.+..+ .|
T Consensus 10 sFDPiH~GHl~ii~~A----~~~~---D~viv~v~~~~~K~~~~~~~eR~~ml~~a~~--~~~--~v~v~~~------~~ 72 (157)
T 3nv7_A 10 TFDPVTNGHIDIIHRS----SELF---EKLIVAVAHSSAKNPMFSLDERLKMIQLATK--SFK--NVECVAF------EG 72 (157)
T ss_dssp CCTTCCHHHHHHHHHH----HTTS---SEEEEEEECCGGGCCSSCHHHHHHHHHHHHT--TST--TEEEEEE------CS
T ss_pred EcCCCCHHHHHHHHHH----HHhC---CceEEEEccCCCCCCCCCHHHHHHHHHHHhc--CCC--cEEEEec------Cc
Confidence 8999999999998654 4554 4455534444456678999999999998775 233 2333222 22
Q ss_pred hhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCC-CcceeeEeeeEEEecccCceeecCCC
Q 011745 343 PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGL-EKLNILPFRVAAYDTVEKKMAFFDPS 421 (478)
Q Consensus 343 PREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~-~~i~i~~f~~~~Y~~~~~~~~~~~p~ 421 (478)
++-. ..+.+|++.+|-|-+..+ ||- |+-|-.. +...+ .+++.+.+ +
T Consensus 73 ----l~~~-~~~~~~~~~ivrG~r~~~--------D~~--ye~~~a~-~n~~l~~~ietv~l----------------~- 119 (157)
T 3nv7_A 73 ----LLAY-LAKEYHCKVLVRGLRVVS--------DFE--YELQMGY-ANKSLNHELETLYF----------------M- 119 (157)
T ss_dssp ----CHHH-HHHHTTCCCBCCCCSCCC--------CHH--HHHHHHH-HHHHSSCCCCCCCC----------------C-
T ss_pred ----hHHH-HHHHcCCCEEEECCcccc--------hhh--hhHHHHH-HHHHhCCCceEEEE----------------c-
Confidence 2322 445689999998844322 221 2222111 11111 22332222 1
Q ss_pred CCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHH
Q 011745 422 RAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQ 459 (478)
Q Consensus 422 ~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~ 459 (478)
.......||+|.||+.++.|.++ ..|.+|.|++.|.+
T Consensus 120 ~~~~~~~iSSt~vRe~~~~ggdv-~~~VP~~V~~~l~~ 156 (157)
T 3nv7_A 120 PTLQNAFISSSIVRSIIAHKGDA-SHLVPKEIYPLISK 156 (157)
T ss_dssp CCHHHHTCCHHHHHHHHHTTCCC-TTTSCTTTHHHHCC
T ss_pred CCcccceeeHHHHHHHHHcCCCh-HHhCCHHHHHHHhh
Confidence 13355689999999999999985 67999999988753
No 20
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=97.65 E-value=0.00017 Score=66.13 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=86.8
Q ss_pred EeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 011745 259 FAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPM 338 (478)
Q Consensus 259 vaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~m 338 (478)
+..=|-||+|.||..++++| .+.+ +-+++-|..-+.|..-++.+.|++..+.++. . ++ +.+..+
T Consensus 9 i~~GsFDPiH~GHl~li~~A----~~~~---d~viv~v~~~~~K~~~~~~~~R~~m~~~~~~--~--~~-v~V~~~---- 72 (162)
T 4f3r_A 9 IYPGTFDPLTNGHVDIIERA----LPLF---NKIIVACAPTSRKDPHLKLEERVNLIADVLT--D--ER-VEVLPL---- 72 (162)
T ss_dssp EEEECCTTCCHHHHHHHHHH----GGGC---SEEEEEECCC------CCHHHHHHHHHHHCC--C--TT-EEEEEC----
T ss_pred EEEEEcCCCCHHHHHHHHHH----HHHC---CcEEEEEecCCccCCCCCHHHHHHHHHHhhC--C--CC-EEEEec----
Confidence 33338999999999998654 4554 4555545544556667999999999987774 2 33 444332
Q ss_pred ccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhh--HHHHhhcCCCcceeeEeeeEEEecccCcee
Q 011745 339 HYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGK--KVLSMALGLEKLNILPFRVAAYDTVEKKMA 416 (478)
Q Consensus 339 ryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq--~i~~~~~~~~~i~i~~f~~~~Y~~~~~~~~ 416 (478)
.| +.--.+ +.+|++.||.|-|-.+ ||- |+.| .+-.... .+++.+.+ .
T Consensus 73 --~~----l~~~~~-~~~~~~~~v~G~r~~~--------Df~--~e~~~a~~nr~l~--~~ietv~l------~------ 121 (162)
T 4f3r_A 73 --TG----LLVDFA-KTHQANFILRGLRAVS--------DFD--YEFQLAHMNYQLS--PEIETIFL------P------ 121 (162)
T ss_dssp --CS----CHHHHH-HHTTCCEEEEEECSHH--------HHH--HHHHHHHHHHHHC--TTCEEEEE------E------
T ss_pred --cc----hHHHHH-HHcCCCEEEECCCchh--------hhh--hHHHHHHHHHHhC--CCccEEEE------E------
Confidence 23 111223 5579999999955221 221 2211 1111111 23444433 1
Q ss_pred ecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHh
Q 011745 417 FFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYY 461 (478)
Q Consensus 417 ~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~ 461 (478)
.+| ....||.|.||+.++.|..+ ..|.+|.|++.|.+-+
T Consensus 122 -~~~----~~~~ISST~IRe~~~~g~~i-~~~VP~~V~~~l~~~~ 160 (162)
T 4f3r_A 122 -ARE----GYSYVSGTMVREIVTLGGDV-SPFVPPLVARHLQKRR 160 (162)
T ss_dssp -CCG----GGSSCCHHHHHHHHHTTCCC-TTTSCHHHHHHC----
T ss_pred -CCc----ccccccHHHHHHHHHcCCCh-hHhCCHHHHHHHHHHh
Confidence 122 34579999999999999977 7899999999887644
No 21
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=97.64 E-value=0.001 Score=60.92 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=87.8
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mryAG 342 (478)
|-||+|.||..+++.| ++.. +-+++-|.....|..-++.+.|++-.+..++ .+| .+.+..+. |
T Consensus 20 sFdP~H~GHl~l~~~A----~~~~---D~viv~v~~~~~kk~~~~~~~R~~ml~~a~~--~~~--~v~v~~~e------~ 82 (173)
T 1vlh_A 20 SFDPITLGHVDIIKRA----LSIF---DELVVLVTENPRKKCMFTLEERKKLIEEVLS--DLD--GVKVDVHH------G 82 (173)
T ss_dssp CCTTCCHHHHHHHHHH----HTTC---SEEEEEEECCTTCCCSSCHHHHHHHHHHHTT--TCT--TEEEEEEC------S
T ss_pred EECcCcHHHHHHHHHH----HHHC---CEEEEEEeCCCCCCCCCCHHHHHHHHHHHhc--CCC--CEEEecCc------c
Confidence 8999999999998654 4554 5566656655566678999999999987675 234 34443333 3
Q ss_pred hhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHH----hhcCCCcceeeEeeeEEEecccCceeec
Q 011745 343 PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLS----MALGLEKLNILPFRVAAYDTVEKKMAFF 418 (478)
Q Consensus 343 PREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~----~~~~~~~i~i~~f~~~~Y~~~~~~~~~~ 418 (478)
+-.-.-+.++++.||-| +. ..+ +-..++. .-++..+++.+ |. ..
T Consensus 83 -----~tvd~l~~l~~~~~i~g-----l~------~w~---d~~~~~~~~~~~r~~~~~~~~i------~l-------~~ 130 (173)
T 1vlh_A 83 -----LLVDYLKKHGIKVLVRG-----LR------AVT---DYEYELQMALANKKLYSDLETV------FL-------IA 130 (173)
T ss_dssp -----CHHHHHHHHTCCEEEEE-----EC------TTS---CHHHHHHHHHHHHHHSTTCEEE------EE-------EC
T ss_pred -----hHHHHHHHhCCCeEEeC-----CC------ccc---chhhccchhhcCCCCCCCCcEE------EE-------eC
Confidence 11122255788888844 22 111 1112221 11111112211 11 01
Q ss_pred CCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHhhh
Q 011745 419 DPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYYES 463 (478)
Q Consensus 419 ~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~~~ 463 (478)
.| ....||+|.+|+.+++|.. ...|.+|.|++.|.+.+.+
T Consensus 131 ~~----~~~~iSST~IR~~i~~g~~-i~~lvP~~V~~yI~~~~~~ 170 (173)
T 1vlh_A 131 SE----KFSFISSSLVKEVALYGGD-VTEWVPPEVARALNEKLKE 170 (173)
T ss_dssp CG----GGTTCCHHHHHHHHHTTCC-CTTTSCHHHHHHHHHHTC-
T ss_pred CC----CCCceeHHHHHHHHHcCCC-hhHcCCHHHHHHHHHHHhc
Confidence 11 1234999999999999986 4568999999999887743
No 22
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=97.46 E-value=0.0006 Score=62.97 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=84.3
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEE-EecCCCcccC
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIV-SIFPSPMHYA 341 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l-~ilP~~mryA 341 (478)
|-||+|.||..+++.| .+.. +-+++-|..-+.|..-++.+.|++-.+..++ .+| + +.+ ..+.
T Consensus 10 sFDPiH~GHl~i~~~a----~~~~---D~viv~v~~~~~K~~~~~~~~R~~ml~~a~~--~~~-~-v~v~~~~e------ 72 (171)
T 3nd5_A 10 SFDPMTNGHLNLIERS----AKLF---DEVIIGVFINTSKQTLFTPEEKKYLIEEATK--EMP-N-VRVIMQET------ 72 (171)
T ss_dssp CCTTCCHHHHHHHHHH----HTTC---SEEEEEEEC------CCCHHHHHHHHHHHHT--TCT-T-EEEEEECS------
T ss_pred EccccCHHHHHHHHHH----HHHC---CCeEEEEecCCCCCCCCCHHHHHHHHHHHHc--cCC-C-EEEeeCCC------
Confidence 8999999999998654 4443 4455545555567778999999999998775 233 2 333 3443
Q ss_pred ChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhh--c-CC-CcceeeEeeeEEEecccCceee
Q 011745 342 GPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA--L-GL-EKLNILPFRVAAYDTVEKKMAF 417 (478)
Q Consensus 342 GPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~--~-~~-~~i~i~~f~~~~Y~~~~~~~~~ 417 (478)
|- ... ..+.++++.||.|-|-.. +| +..++.. . .+ .+++.+.+
T Consensus 73 ~~---tvd--~~~~l~~~~~i~G~~~~~--------d~------~~e~~la~~nr~l~~~~etv~l-------------- 119 (171)
T 3nd5_A 73 QL---TVE--SAKSLGANFLIRGIRNVK--------DY------EYEKDIAKMNQHLAPEIETVFL-------------- 119 (171)
T ss_dssp SC---HHH--HHHHHTCCEEEEEECSHH--------HH------HHHHHHHHHHHHHCTTSEEEEE--------------
T ss_pred Cc---HHH--HHHHCCCCEEEECCCchh--------hh------HHHHHHHHHhhhhcCCccEEEE--------------
Confidence 21 111 124568889999955211 11 1222211 0 00 11222221
Q ss_pred cCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 418 FDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 418 ~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
. .......||+|.||+.++.|..+ ..|.+|.|++-|.+.
T Consensus 120 ~---~~~~~~~ISST~IRe~~~~g~~i-~~lVP~~V~~~i~~~ 158 (171)
T 3nd5_A 120 L---AEEPYAHVSSSLLKEVLRFGGDV-SDYLPPNIYHALKQK 158 (171)
T ss_dssp E---CCGGGTTCCHHHHHHHHHTTCCC-GGGSCHHHHHHHHHC
T ss_pred e---CCccccccchHHHHHHHHcCCCh-hHhCCHHHHHHHHHh
Confidence 1 11234479999999999999875 678999999988764
No 23
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=97.35 E-value=0.00037 Score=68.67 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=81.8
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEE-cccc--CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 011745 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL-HPLG--GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPM 338 (478)
Q Consensus 262 QTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL-~Plv--G~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~m 338 (478)
=|-||+|.||..|++.|.+.+ +-+.+ -|.. -.+|..-++.+.|++-.+..+.+ ++.+++.+-.+.- .
T Consensus 14 G~FdP~H~GH~~li~~a~~~~-------d~v~v~v~~~~~p~~~~~~~~~~~R~~m~~~~~~~--~~~~~~~~i~~~d-~ 83 (341)
T 2qjo_A 14 GRFQPFHLGHLRTLNLALEKA-------EQVIIILGSHRVAADTRNPWRSPERMAMIEACLSP--QILKRVHFLTVRD-W 83 (341)
T ss_dssp ECCTTCCHHHHHHHHHHHHHE-------EEEEEEEEEETCCCCSSSCSCHHHHHHHHHTTSCH--HHHTTEEEEEEEC-C
T ss_pred EEeCCCCHHHHHHHHHHHHhC-------CeEEEEECCcccCCCCCCCCCHHHHHHHHHHHhhh--ccCCeEEEEECCC-C
Confidence 389999999999987665422 22222 1221 12345568999998866654431 1212233322221 1
Q ss_pred ccCChhHHHHHHHHH---Hhc--C-CceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEeccc
Q 011745 339 HYAGPTEVQWHAKAR---INA--G-ANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVE 412 (478)
Q Consensus 339 ryAGPREAllHAivR---kNy--G-cTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~ 412 (478)
.++- ..|+.-++ +.+ | |+..++|.|..+.. + ....++ ++.++.+
T Consensus 84 ~~~~---~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~~~-------~--------~~~~~~---~~~~~~~--------- 133 (341)
T 2qjo_A 84 LYSD---NLWLAAVQQQVLKITGGSNSVVVLGHRKDASS-------Y--------YLNLFP---QWDYLET--------- 133 (341)
T ss_dssp TTCH---HHHHHHHHHHHHHHHTTCSCEEEEECCCSGGG-------G--------GGGSCT---TSEEEEC---------
T ss_pred cCCh---HHHHHHHHHHhHHhcCCCceEEEEcCCCCCCh-------H--------HHHhcc---ccceeec---------
Confidence 1111 23333221 222 2 88999998863211 1 111111 3443333
Q ss_pred CceeecCCCCCccccccCHHHHHHHHHCCCCCCCC-CCchhHHHHHHHHh
Q 011745 413 KKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDG-FMCPGGWKVLVQYY 461 (478)
Q Consensus 413 ~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~-F~rPeV~~iL~~~~ 461 (478)
| ....||+|.||+++++|....-| +..+.|++.|.++.
T Consensus 134 -------~----~~~~iSST~IR~~l~~g~~~~~~~lvp~~v~~~i~~~~ 172 (341)
T 2qjo_A 134 -------G----HYPDFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQTFQ 172 (341)
T ss_dssp -------C----CCTTCCHHHHHHHHHHTCGGGTTTTSCHHHHHHHHHHT
T ss_pred -------c----cCCCCCcHHHHHHHHcCCCcchhhhCCHHHHHHHHHhc
Confidence 1 23469999999999999864311 67889999988763
No 24
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=97.30 E-value=0.00019 Score=66.57 Aligned_cols=149 Identities=13% Similarity=0.171 Sum_probs=87.4
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc--
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH-- 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG-~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr-- 339 (478)
|-||+|.||..+.+ + ++. .+-+++-|... ..|.+-++.+.|++-.+.++++ .|...+. +-.....
T Consensus 10 sFdPih~GHl~i~~-a----~~~---~d~v~~~p~~~~~~k~~~~~~~~R~~m~~~a~~~--~~~~~~~--v~~~E~~l~ 77 (177)
T 3h05_A 10 AFNPPSLGHKSVIE-S----LSH---FDLVLLEPSIAHAWGKNMLDYPIRCKLVDAFIKD--MGLSNVQ--RSDLEQALY 77 (177)
T ss_dssp CCSSCCHHHHHHHT-T----CTT---SSEEEEEECC-------CCCHHHHHHHHHHHHHH--HCCTTEE--ECCHHHHHC
T ss_pred ccchhhHHHHHHHH-H----HHH---CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHhc--CCCCcEE--EEehhhhcc
Confidence 89999999999964 3 222 14455546542 3456779999999999988863 3422233 3332221
Q ss_pred cCC-hhH--HHHHHHHHHhcCCc--eeeecCCCC-CCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccC
Q 011745 340 YAG-PTE--VQWHAKARINAGAN--FYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEK 413 (478)
Q Consensus 340 yAG-PRE--AllHAivRkNyGcT--HfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~ 413 (478)
-.| |.- -.+.. +++.|.-. .||+|-|.. +.. .+| +.++|++... + +-++
T Consensus 78 ~~~~~syT~dTl~~-l~~~~p~~~~~~iiG~D~l~~l~------~W~---~~~~l~~~~~----~--vv~~--------- 132 (177)
T 3h05_A 78 QPGQSVTTYALLEK-IQEIYPTADITFVIGPDNFFKFA------KFY---KAEEITERWT----V--MACP--------- 132 (177)
T ss_dssp ----CCCHHHHHHH-HHHHSTTSEEEEEECHHHHHTGG------GST---THHHHHHHSE----E--EECC---------
T ss_pred cCCCCcchHHHHHH-HHHHhcCCCeEEEEecchhhhcc------cch---hHHHHHHhCC----E--EEEc---------
Confidence 122 321 12333 35556444 489999943 322 233 3567776431 2 1111
Q ss_pred ceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 414 KMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 414 ~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
....||+|++|+++++|+.+ ..+..++|++.+.+.
T Consensus 133 -----------r~~~iSST~IR~~i~~g~~~-~~lvp~~V~~yI~~~ 167 (177)
T 3h05_A 133 -----------EKVKIRSTDIRNALIEGKDI-STYTTPTVSELLLNE 167 (177)
T ss_dssp -----------CSSCCCHHHHHHHHHHTCCC-TTTSCHHHHHHHHC-
T ss_pred -----------CCCCCcHHHHHHHHHcCCCh-hHhCCHHHHHHHHHc
Confidence 14689999999999999874 678899999988763
No 25
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=97.29 E-value=0.0038 Score=58.25 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=92.4
Q ss_pred EEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCC
Q 011745 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSP 337 (478)
Q Consensus 258 VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~ 337 (478)
.+..=|-||+|.||..++++|. +.. +-+++-|..-..|..-++.+.|++-.+..++ .+| + +.+..+
T Consensus 24 ~i~~GsFDPiH~GHl~ii~~A~----~~~---D~Viv~v~~np~K~~~~s~eeR~~mv~~a~~--~~~-~-v~V~~~--- 89 (177)
T 3nbk_A 24 AVCPGSFDPVTLGHVDIFERAA----AQF---DEVVVAILVNPAKTGMFDLDERIAMVKESTT--HLP-N-LRVQVG--- 89 (177)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH----HHS---SEEEEEECCCTTSCCSSCHHHHHHHHHHHCT--TCT-T-EEEEEC---
T ss_pred EEEEEeeCCCCHHHHHHHHHHH----HHC---CEEEEEEcCCCCCCCCCCHHHHHHHHHHHhC--CCC-C-EEEEec---
Confidence 3333499999999999987653 443 4555556655567788999999999987775 334 2 333332
Q ss_pred cccCChhHHHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhh---cCCCcceeeEeeeEEEecccCc
Q 011745 338 MHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA---LGLEKLNILPFRVAAYDTVEKK 414 (478)
Q Consensus 338 mryAGPREAllHAivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~---~~~~~i~i~~f~~~~Y~~~~~~ 414 (478)
-|- +. =..+.+|++.||-|=+-.. || + ..|++. ..+.+++.+.+ .
T Consensus 90 ---e~l---~v--d~~~~~~a~~ivrGlr~~~--------Df----e--ye~~~a~~nr~l~~ietvfl------~---- 137 (177)
T 3nbk_A 90 ---HGL---VV--DFVRSCGMTAIVKGLRTGT--------DF----E--YELQMAQMNKHIAGVDTFFV------A---- 137 (177)
T ss_dssp ---CSC---HH--HHHHHTTCCEEEEEECTTC--------CH----H--HHHHHHHHHHHHHCCEEEEE------E----
T ss_pred ---Cch---HH--HHHHHcCCCEEEECCCchh--------HH----H--HHHHHHHHHHhcCCCceEEE------e----
Confidence 231 22 2345589998886633111 12 1 122211 00122433322 1
Q ss_pred eeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHHh
Q 011745 415 MAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQYY 461 (478)
Q Consensus 415 ~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~~ 461 (478)
.......||.|.||+.++.|.++ ..|.+|.|++.|.+-+
T Consensus 138 -------~~~~~~~ISST~IRe~~~~ggdv-~~lVP~~V~~~l~~~~ 176 (177)
T 3nbk_A 138 -------TAPRYSFVSSSLAKEVAMLGGDV-SELLPEPVNRRLRDRL 176 (177)
T ss_dssp -------CCGGGSSCCHHHHHHHHHTTCCC-GGGSCHHHHHHHHHHH
T ss_pred -------CCCcccccchHHHHHHHHcCCCh-hHhCCHHHHHHHHHHh
Confidence 12244579999999999999865 6799999999887643
No 26
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=97.29 E-value=0.0015 Score=60.10 Aligned_cols=168 Identities=15% Similarity=0.148 Sum_probs=90.2
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCC-CC--CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 011745 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF-TK--ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPM 338 (478)
Q Consensus 262 QTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~-tK--~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~m 338 (478)
=+-||+|.||..|++.|.+. .+. +.+++-|.... .| ..-++.+.|++-.+..+++ +|. +. +-....
T Consensus 9 GsFdp~H~GH~~l~~~a~~~---~~~--d~v~~~~~~~~~~k~~~~~~~~~~R~~m~~~a~~~--~~~--v~--v~~~e~ 77 (189)
T 2h29_A 9 GQFNPIHTAHMIVASEVFHE---LQP--DEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDE--LGF--GD--ICDDEI 77 (189)
T ss_dssp ECCTTCCHHHHHHHHHHHHH---HCC--SEEEEEECSBCTTSCCCSSCCCHHHHHHHHHHHHH--HTC--CE--ECCHHH
T ss_pred ecCCcccHHHHHHHHHHHHH---cCC--CEEEEEECCCCCCCcCCCCCCHHHHHHHHHHHHcC--CCC--EE--EehHHh
Confidence 38999999999998876543 221 23333343322 23 3457999999998877753 332 22 222222
Q ss_pred ccCChhHH--HHHHHHHHhcCCc--eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEec-ccC
Q 011745 339 HYAGPTEV--QWHAKARINAGAN--FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDT-VEK 413 (478)
Q Consensus 339 ryAGPREA--llHAivRkNyGcT--HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~-~~~ 413 (478)
.-.||.-. .+.. +++.|.-+ .||+|-|...=- ..+| +.++++... .++-+..-.|.. ...
T Consensus 78 ~~~~~syt~dtl~~-l~~~~p~~~~~~i~G~D~~~~~-----~~W~---~~~~i~~~~------~~~v~~R~~~~~~~~~ 142 (189)
T 2h29_A 78 KRGGQSYTYDTIKA-FKEQHKDSELYFVIGTDQYNQL-----EKWY---QIEYLKEMV------TFVVVNRDKNSQNVEN 142 (189)
T ss_dssp HHCSBCCHHHHHHH-HHHHSTTEEEEEEEEHHHHTTG-----GGST---THHHHHHHC------EEEEECCSSSCCCCCT
T ss_pred cCCCCCCHHHHHHH-HHHHCCCCcEEEEEecchhhhh-----cccc---CHHHHHhhC------cEEEEECCCCccccCC
Confidence 22354211 2222 34445332 788998854211 1233 235666532 111111100000 011
Q ss_pred ceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHHH
Q 011745 414 KMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQY 460 (478)
Q Consensus 414 ~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~~ 460 (478)
.+..... + ...||+|.||+++++|..+ ..+.+|.|++.|.+.
T Consensus 143 ~i~~~~~-~---~~~ISST~IR~~i~~g~~~-~~lvP~~V~~yI~~~ 184 (189)
T 2h29_A 143 AMIAIQI-P---RVDISSTMIRQRVSEGKSI-QVLVPKSVENYIKGE 184 (189)
T ss_dssp TSEEECC-C---CBCCCHHHHHHHHHTTCCC-BTTBCHHHHHHHHHH
T ss_pred cEEEEcC-C---CCccCHHHHHHHHHcCCCh-hhcCCHHHHHHHHHh
Confidence 1111111 1 2579999999999999874 568999999988763
No 27
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=97.18 E-value=0.0052 Score=59.36 Aligned_cols=167 Identities=15% Similarity=0.170 Sum_probs=96.1
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCC-CC-CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF-TK-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 262 QTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~-tK-~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
=|-||+|.||..|++.|.+.+ + .+.+++-|.... .| ...++.+.|++-.+..+.+ .| . +. +.+....
T Consensus 30 GsFdPiH~GHl~li~~a~~~~---~--ld~v~v~~~~~~p~K~~~~~~~~~R~~ml~~a~~~--~~-~-v~--v~~~e~~ 98 (242)
T 1yum_A 30 GTFDPVHIGHMRSAVEMAEQF---A--LDELRLLPNARPPHRETPQVSAAQRLAMVERAVAG--VE-R-LT--VDPRELQ 98 (242)
T ss_dssp ECCTTCCHHHHHHHHHHHHHH---T--CSEEEEEECCCCGGGSCTTCCHHHHHHHHHHHHTT--CT-T-EE--ECCGGGG
T ss_pred eeCcHhhHHHHHHHHHHHHHc---C--CCEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHhcC--CC-e-EE--Eeeeeec
Confidence 399999999999988765432 2 244555444432 34 3578999999998876642 23 2 32 4555555
Q ss_pred cCChhHHH-HHHHHHHhcCCc---eeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEec-----
Q 011745 340 YAGPTEVQ-WHAKARINAGAN---FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDT----- 410 (478)
Q Consensus 340 yAGPREAl-lHAivRkNyGcT---HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~----- 410 (478)
-.||.-.+ .=..+++.||.+ .||+|-|-.-=- ..+|+ .++|++.. .+-+++ +. |..
T Consensus 99 ~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D~l~~l-----~~W~~---~~~i~~~~----~~vv~~-R~--~~~~~~~~ 163 (242)
T 1yum_A 99 RDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGL-----PTWHR---WEALLDHC----HIVVLQ-RP--DADSEPPE 163 (242)
T ss_dssp SSSSCCHHHHHHHHHHHSCTTCEEEEEEEHHHHTTG-----GGSTT---GGGSTTTC----EEEEEE-CS--SSCCCCCG
T ss_pred CCCCCCHHHHHHHHHHHhCCCCcEEEEEehhHhhhh-----hhhcC---HHHHHhhC----cEEEEE-CC--CchhhhhH
Confidence 55653322 112356777776 688898743211 12342 33444321 111111 00 100
Q ss_pred -------------------ccCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHHHHH
Q 011745 411 -------------------VEKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKVLVQ 459 (478)
Q Consensus 411 -------------------~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~iL~~ 459 (478)
..+.+.... .....||.|.||+++++|.. ...+.+|+|++.|.+
T Consensus 164 e~~~~~~~~~~~~~~~L~~~~~~i~~~~----~~~~~ISST~IR~~i~~g~~-i~~lVP~~V~~yI~~ 226 (242)
T 1yum_A 164 SLRDLLAARSVADPQALKGPGGQITFVW----QTPLAVSATQIRALLGAGRS-VRFLVPDAVLNYIEA 226 (242)
T ss_dssp GGHHHHHHHBCSCGGGCCSSSCCEEEEE----CCCCSCCHHHHHHHHHTTCC-CBTTBCHHHHHHHHH
T ss_pred HHHHHHHHhhccchhhhccCCCeEEEec----CCCCcCcHHHHHHHHHcCCC-hhHcCCHHHHHHHHH
Confidence 001111110 01247999999999999996 567999999999986
No 28
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=97.13 E-value=0.0016 Score=66.93 Aligned_cols=178 Identities=21% Similarity=0.208 Sum_probs=98.2
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEE-ccc--cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL-HPL--GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL-~Pl--vG~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ 332 (478)
+.|++.=.-||+|+||.++++.+.+ .+ ....++ .+. +....+--++.+.|.+-.+.+ | -| .++
T Consensus 53 ~~v~~lG~FDg~H~GHq~lI~~a~~----~~--~~~~Vms~~~~~vqrg~~~l~~~~~R~~~~~~~---G---vD-~vi- 118 (357)
T 3gmi_A 53 KIVCDFTEYNPLHKGHKYALEKGKE----HG--IFISVLPGPLERSGRGIPYFLNRYIRAEMAIRA---G---AD-IVV- 118 (357)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHHT----SS--EEEEEECCTTSBCTTSSBCSSCHHHHHHHHHHH---T---CS-EEE-
T ss_pred CEEEEEEecCccCHHHHHHHHHHHH----cC--CeEEEEcCchHHhcCCCCcCCCHHHHHHHHHHC---C---CC-EEE-
Confidence 5788888999999999999986643 21 122233 223 443345567778888866543 1 24 344
Q ss_pred ecCCCcccCChhHHHHHH-HHHHhcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeE-------ee
Q 011745 333 IFPSPMHYAGPTEVQWHA-KARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILP-------FR 404 (478)
Q Consensus 333 ilP~~mryAGPREAllHA-ivRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~-------f~ 404 (478)
.+|..+. -.|.|-+-.| .+-+.+||.+++||- +... +| +++.........+.+.| |.
T Consensus 119 elpF~~~-~s~~~Fv~~~v~ll~~l~~~~iv~G~-~~~~-------~~------~~~~~~i~~~~~~~~kp~~~~g~ey~ 183 (357)
T 3gmi_A 119 EGPPMGI-MGSGQYMRCLIKMFYSLGAEIIPRGY-IPEK-------TM------EKVIDCINKGYHIQVKPYKIICIETG 183 (357)
T ss_dssp ECCCGGG-SCHHHHHHHHHHHHHHHTCCEEEEEE-CCCH-------HH------HHHHHHHHTTCCEEEETTEEEETTTC
T ss_pred EcCchhh-CCHHHHHHHHHHHHHHcCCCEEEECC-CCch-------hH------HHHHHHHhcccccccccchhccCcHH
Confidence 7787533 5666643332 233589999999998 4322 11 22222111001122211 11
Q ss_pred e-------------EEEecccCceee--cCCCCCc---cc-cccCHHHHHHHHHCCC-CCCCCCCchhHHHHHHHHhh
Q 011745 405 V-------------AAYDTVEKKMAF--FDPSRAK---DF-LFISGTKMRTFARSGE-NPPDGFMCPGGWKVLVQYYE 462 (478)
Q Consensus 405 ~-------------~~Y~~~~~~~~~--~~p~~~~---~~-~~iSGT~vR~~L~~G~-~pP~~F~rPeV~~iL~~~~~ 462 (478)
. .-||+....+.+ ..++-.- .| ..+|+|.||+++.+|. .-=..|.++.+++.|.+.++
T Consensus 184 ~~~~~~l~~pn~il~~y~kai~~~~~~~~~~~i~~~~i~R~~~~SAS~IR~~i~~g~~~~~~~lVP~~t~~~l~~~~~ 261 (357)
T 3gmi_A 184 EILGEKLNIDNYVIASMSQMIYKLNREGLKFNPKFVFVKRLEGISGTKIREAIFSGKFEDIKNMLPKTTLSILKELYD 261 (357)
T ss_dssp CEEESCCCGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEECSCCCCHHHHHHHHHTTCGGGTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHhccCCChHHHHHHHHHHHhCcCcCCCCCeEEEecCCCcccHHHHHHHHHcCChhHHHhcCChHHHHHHHHHHh
Confidence 1 112222222220 0011000 01 1599999999999996 33456899999999998764
No 29
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=97.12 E-value=0.0022 Score=65.28 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=91.8
Q ss_pred eEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcc----ccCCCC--CCCCChHHHHHHHHHHHHcCCCCCCceE
Q 011745 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP----LGGFTK--ADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (478)
Q Consensus 257 ~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~P----lvG~tK--~~Di~~~~Rvr~y~~ll~~~y~p~~~~~ 330 (478)
.|++.=+-+++|+||.+|++.|.+.|.+.+....++-..| +....+ .--.+.+.|++-.+.+ --+ .+
T Consensus 17 ~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~------gVD-~v 89 (338)
T 2x0k_A 17 SAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESF------GID-GV 89 (338)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHT------TCS-EE
T ss_pred eEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhc------CCC-EE
Confidence 6777779999999999999988877766542222333333 222211 2246788888855542 223 23
Q ss_pred EEecCCCcccCC-hhHHHHHHHHHHhcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEE
Q 011745 331 VSIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAY 408 (478)
Q Consensus 331 l~ilP~~mryAG-PREAllHAivRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y 408 (478)
+ ++|....++. .-|.....++.+.+++.+++||-|+. |-+ ..+ +. +.+..+... |++++..+..-+
T Consensus 90 ~-v~~F~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~------r~g---~~-~~L~~~~~~-g~~V~~v~~~~~ 157 (338)
T 2x0k_A 90 L-VIDFTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGEN------AAG---TA-DSLRQICQS-RLTVDVIDLLDD 157 (338)
T ss_dssp E-EECTTTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGG------GCE---EH-HHHHHHTTT-TSEEEEECCCEE
T ss_pred E-EccccHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCC------CCC---CH-HHHHHHhcC-CeEEEEECcEec
Confidence 3 6677666653 22445555667889999999999964 332 111 12 233444334 666655433211
Q ss_pred ecccCceeecCCCCCccccccCHHHHHHHHHCCC
Q 011745 409 DTVEKKMAFFDPSRAKDFLFISGTKMRTFARSGE 442 (478)
Q Consensus 409 ~~~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~ 442 (478)
+-..||.|.+|++|++|.
T Consensus 158 ----------------~~~~ISST~IR~~L~~G~ 175 (338)
T 2x0k_A 158 ----------------EGVRISSTTVREFLSEGD 175 (338)
T ss_dssp ----------------TTEECSHHHHHHHHHTTC
T ss_pred ----------------CCcccccchHHHHHhcCc
Confidence 123699999999999996
No 30
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=97.04 E-value=0.0078 Score=59.60 Aligned_cols=152 Identities=13% Similarity=0.163 Sum_probs=86.7
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC---CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG---FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG---~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP~~mr 339 (478)
|-||+|.||..|++.|+ +.. +-+++-+... .+|..-++.+.|++-.+..+++.-+|..++.+..++. +.
T Consensus 15 tFdP~h~GHl~~~~~a~----~~~---d~~~~~v~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~~~~~~~~~d-~~ 86 (352)
T 2qjt_B 15 RFQPFHKGHLHNIIIAL----QNS---KKVIINIGSCFNTPNIKNPFSFEQRKQMIESDLQVAGIDLDTVVIEPLAD-YF 86 (352)
T ss_dssp CCTTCCHHHHHHHHHHH----HSE---EEEEEEEEEESCCCCSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEEEEC-CT
T ss_pred ecCCCChHHHHHHHHHH----HhC---CcEEEEECCCCCCcccCCCCCHHHHHHHHHHHhccccCccceEEEEEcCC-Cc
Confidence 89999999999987653 432 3333323322 2456678999999999988865445655555434332 22
Q ss_pred cCChhHHHHHHHHHHhc------CCceeeecCCCCCCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEecccC
Q 011745 340 YAGPTEVQWHAKARINA------GANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVEK 413 (478)
Q Consensus 340 yAGPREAllHAivRkNy------GcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~~ 413 (478)
+. ..+|...+++.. .+...++|+.... . ...+...+. ...+..
T Consensus 87 ~~---~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~--------------~-~~~~~~~~~---~~~~~~---------- 135 (352)
T 2qjt_B 87 YQ---EQKWQDELRKNVYKHAKNNNSIAIVGHIKDS--------------S-SYYIRSFPE---WDYIGV---------- 135 (352)
T ss_dssp TC---HHHHHHHHHHHHTTTSCSSCCEEECCBSSSS--------------H-HHHHHHCTT---SEECCB----------
T ss_pred CC---hHHHHHHHHHHHHHhcccCCeEEEEcCCCCc--------------c-hhhhhcCCc---cceecc----------
Confidence 22 246766655432 2345555554110 0 000111110 100000
Q ss_pred ceeecCCCCCccccccCHHHHHHHHHC-C--CCCCCCCCch-hHHHHHHHHhhh
Q 011745 414 KMAFFDPSRAKDFLFISGTKMRTFARS-G--ENPPDGFMCP-GGWKVLVQYYES 463 (478)
Q Consensus 414 ~~~~~~p~~~~~~~~iSGT~vR~~L~~-G--~~pP~~F~rP-eV~~iL~~~~~~ 463 (478)
+ ....||.|.||+++.. | ..--..|..+ .|++.|.+++..
T Consensus 136 ------~----~~~~iSST~IR~~~~~~g~~~~~i~~lvP~~~va~~I~~w~~~ 179 (352)
T 2qjt_B 136 ------D----NYKNFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDT 179 (352)
T ss_dssp ------C----CTTCCCHHHHHHHHHTTCCCGGGCSCSSTTSHHHHHHHHHTTS
T ss_pred ------C----CCCCCCchHHHHHHhccCcccchhhhcCChHHHHHHHHHHhcC
Confidence 0 2236999999999997 7 3203456788 899999988654
No 31
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=96.69 E-value=0.0094 Score=57.69 Aligned_cols=180 Identities=16% Similarity=0.078 Sum_probs=97.3
Q ss_pred EEeeccCCCCchhhHHHHHHHHHHHHHcCC-CCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 011745 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGY-KNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (478)
Q Consensus 258 VvaFQTRNPlHRaHe~l~r~a~~~ale~g~-~~~~lLL~PlvG-~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP 335 (478)
++..=|-||+|.||..|++.|.+.+-+.+. ...++++.|... ..|..-++.+.|++-.+..+++ .| . +.+-+
T Consensus 9 ~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~--~~-~---~~v~~ 82 (252)
T 1nup_A 9 LLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQT--SD-W---IRVDP 82 (252)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGG--CS-S---EEECC
T ss_pred EEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcC--CC-c---eEeeh
Confidence 343448999999999999887765433210 011134445532 2355678999999999888763 23 2 33445
Q ss_pred CCcccCChhHH--HHHHHHHHhcC-----------------------CceeeecCCCC----CCCCCCCCCCCCCCchhh
Q 011745 336 SPMHYAGPTEV--QWHAKARINAG-----------------------ANFYIVGRDPA----GMGHPTEKRDLYDPDHGK 386 (478)
Q Consensus 336 ~~mryAGPREA--llHAivRkNyG-----------------------cTHfIVGRDHA----GvG~~~~~~~~Y~~~~aq 386 (478)
+...-.||.-. .+.. +++-|| --.||+|-|-. .+| .+|+ ++.+
T Consensus 83 ~E~~~~~~syTidtL~~-l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~fiiGaD~l~~l~~p~------~W~~-~~~~ 154 (252)
T 1nup_A 83 WESEQAQWMETVKVLRH-HHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPN------LWKD-AHIQ 154 (252)
T ss_dssp HHHHSSSCCCHHHHHHH-HHHHHC--------------------CCCEEEEEEEHHHHHHTTSTT------TSCH-HHHH
T ss_pred HHhcCCCCCCHHHHHHH-HHHHHhhccccccccccccccccCCCCCceEEEEEecchHhHCCCcC------ccCc-chHH
Confidence 44445555322 1211 333342 12466676641 111 1332 3467
Q ss_pred HHHHhhcCCCcceeeE-----eeeEEEec-----ccCceeecCCCCCccccccCHHHHHHHHHCCCCCCCCCCchhHHHH
Q 011745 387 KVLSMALGLEKLNILP-----FRVAAYDT-----VEKKMAFFDPSRAKDFLFISGTKMRTFARSGENPPDGFMCPGGWKV 456 (478)
Q Consensus 387 ~i~~~~~~~~~i~i~~-----f~~~~Y~~-----~~~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~~pP~~F~rPeV~~i 456 (478)
+|+..+. +-+++ ...+.|.. -.+.+.... ......||.|.||+++++|+.+ ..+..+.|++.
T Consensus 155 ~i~~~~~----lvv~~R~g~~~~~~~~~~~~l~~~~~~i~~~~---~~~~~~ISST~IR~~~~~g~~i-~~lvP~~V~~y 226 (252)
T 1nup_A 155 EIVEKFG----LVCVGRVSHDPKGYIAESPILRMHQHNIHLAK---EPVQNEISATYIRRALGQGQSV-KYLIPDAVITY 226 (252)
T ss_dssp HHHHHTC----EEEECCTTCCHHHHHHHCHHHHHTGGGEEEEC---CCSCCCCCHHHHHHHHHTTCCC-BTTBCHHHHHH
T ss_pred HHHhhCc----EEEEECCCCChHHhhhhHHHHHhcCCCEEEEc---CCCCCccCHHHHHHHHHcCCCc-hhcCCHHHHHH
Confidence 7776431 21111 00000000 011111111 1123579999999999999875 46889999999
Q ss_pred HHH
Q 011745 457 LVQ 459 (478)
Q Consensus 457 L~~ 459 (478)
|.+
T Consensus 227 I~~ 229 (252)
T 1nup_A 227 IKD 229 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 32
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=96.44 E-value=0.032 Score=55.01 Aligned_cols=180 Identities=16% Similarity=0.066 Sum_probs=99.4
Q ss_pred EEeeccCCCCchhhHHHHHHHHHHHHHcCC-CCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 011745 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGY-KNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (478)
Q Consensus 258 VvaFQTRNPlHRaHe~l~r~a~~~ale~g~-~~~~lLL~PlvG-~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP 335 (478)
++..=|-||+|.||..|++.|.+.+-.-+. ...++++.|... ..|..-++.+.|++-.+.++. + .| . +.+.+
T Consensus 11 ~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K~~l~s~~~R~~ml~~ai~-~-~~--~--~~v~~ 84 (279)
T 1kqn_A 11 LLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATK-N-SK--W--VEVDT 84 (279)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCCTTCCCHHHHHHHHHHHTT-T-CS--S--EEECC
T ss_pred EEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccccCCCCHHHHHHHHHHHhc-C-CC--c--EEEec
Confidence 444448999999999999887664432110 011224445421 335567899999998887764 2 22 2 33667
Q ss_pred CCcccCChhHHH--HHHHHHHhcC------------------------------------------CceeeecCCCCC-C
Q 011745 336 SPMHYAGPTEVQ--WHAKARINAG------------------------------------------ANFYIVGRDPAG-M 370 (478)
Q Consensus 336 ~~mryAGPREAl--lHAivRkNyG------------------------------------------cTHfIVGRDHAG-v 370 (478)
....-.|+...+ +.. +++.|| --.||+|-|-.- .
T Consensus 85 ~E~~~~~~syTidtL~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~GaD~l~~~ 163 (279)
T 1kqn_A 85 WESLQKEWKETLKVLRH-HQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLESF 163 (279)
T ss_dssp TGGGCSSCCCHHHHHHH-HHHHHTC--------------------------------------CCCEEEEEEEHHHHHHT
T ss_pred cccccCCCCcHHHHHHH-HHHHHhhcccccccccccccccccccccccccccccccccccCCCCCccEEEEEehhhHhhC
Confidence 777667774322 221 233331 125777876431 1
Q ss_pred CCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEec------------ccCceeec-CCCCCccccccCHHHHHHH
Q 011745 371 GHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDT------------VEKKMAFF-DPSRAKDFLFISGTKMRTF 437 (478)
Q Consensus 371 G~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~------------~~~~~~~~-~p~~~~~~~~iSGT~vR~~ 437 (478)
..+ ..+| .++.++|++.+. +-+++ -..|.. -.+.+... .+ ....||.|++|++
T Consensus 164 ~~p---~~W~-~~~~e~il~~~~----lvv~~--R~g~~~~~~~~~~~~l~~~~~~i~~v~~~----~~~~ISST~IR~~ 229 (279)
T 1kqn_A 164 AVP---NLWK-SEDITQIVANYG----LICVT--RAGNDAQKFIYESDVLWKHRSNIHVVNEW----IANDISSTKIRRA 229 (279)
T ss_dssp TST---TTSC-HHHHHHHHHHTC----EEEEE--SCHHHHHHHHHTCHHHHHTGGGEEEEECC----SCCCCCHHHHHHH
T ss_pred cCc---cccC-cchHHHHHhhCc----EEEEe--CCCCChHhhhhhHHHHhhcCCcEEEECCC----CCCccCHHHHHHH
Confidence 000 0133 233677876542 22222 100100 01111111 11 1347999999999
Q ss_pred HHCCCCCCCCCCchhHHHHHHH
Q 011745 438 ARSGENPPDGFMCPGGWKVLVQ 459 (478)
Q Consensus 438 L~~G~~pP~~F~rPeV~~iL~~ 459 (478)
+++|+.+ ..+..++|++-|.+
T Consensus 230 l~~g~si-~~lvP~~V~~YI~~ 250 (279)
T 1kqn_A 230 LRRGQSI-RYLVPDLVQEYIEK 250 (279)
T ss_dssp HHTTCCC-BTTBCHHHHHHHHH
T ss_pred HHcCCCh-hhcCCHHHHHHHHH
Confidence 9999865 56888999999987
No 33
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=96.41 E-value=0.03 Score=48.25 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=49.6
Q ss_pred EEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC-----CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 011745 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-----FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (478)
Q Consensus 258 VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG-----~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ 332 (478)
++..=+-||+|+||..|++.|. +.+ +-+.+-+... ..|..-++.+.|++-.++ + +.. +.+++.
T Consensus 4 ~~~~G~FDp~H~GH~~li~~a~----~~~---~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~-~--~~~--d~v~~~ 71 (132)
T 2b7l_A 4 VITYGTYDLLHYGHIELLRRAR----EMG---DYLIVALSTDEFNQIKHKKSYYDYEQRKMMLES-I--RYV--DLVIPE 71 (132)
T ss_dssp EEEEECCCSCCHHHHHHHHHHH----HTS---SEEEEEEECHHHHHHTTCCCSSCHHHHHHHHHT-B--TTC--CEEEEE
T ss_pred EEEeeecCcCCHHHHHHHHHHH----HhC---CcEEEEEECCHHHhccCCCCCCCHHHHHHHHHh-c--CCC--CEEEEC
Confidence 3333489999999999987653 443 2222211110 123346889999986663 2 122 333331
Q ss_pred ecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCC
Q 011745 333 IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (478)
Q Consensus 333 ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHA 368 (478)
..|.+-+-. + +.++++++|+|.|..
T Consensus 72 --------~~~~~~~~~--~-~~~~~~~iv~G~D~~ 96 (132)
T 2b7l_A 72 --------KGWGQKEDD--V-EKFDVDVFVMGHDWE 96 (132)
T ss_dssp --------CCGGGHHHH--H-HHTTCCEEEECGGGT
T ss_pred --------CChHHHHHH--H-HHcCCCEEEECCCCc
Confidence 112222222 3 568999999999974
No 34
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=96.05 E-value=0.058 Score=53.77 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=77.7
Q ss_pred eeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcccc---CCC-CCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 011745 260 AFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG---GFT-KADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (478)
Q Consensus 260 aFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Plv---G~t-K~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~ilP 335 (478)
+.=+-+.+|+||..|++.|.+.|.+.+....++-..|.. ... ..--.+.+.|++-.++ +- .++ ++|
T Consensus 4 tiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~------lg---~~~-v~~ 73 (293)
T 1mrz_A 4 SIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSR------YA---RTV-VLD 73 (293)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTT------TS---CEE-EEC
T ss_pred EEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHh------CC---CEE-EEE
Confidence 333789999999999998887776655322233334422 111 1225677888874432 21 223 555
Q ss_pred CCcccC--ChhHHHHHHHHHHhcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHHHhhcCCCcceeeEeeeEEEeccc
Q 011745 336 SPMHYA--GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVAAYDTVE 412 (478)
Q Consensus 336 ~~mryA--GPREAllHAivRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y~~~~ 412 (478)
. ..++ .| |.....++ +++.+++||-|+. |-+ . ..+.. .+.. .|++++..+..-
T Consensus 74 F-~~~a~ls~-~~Fi~~il---l~~~~iVvG~Df~fG~~------~---~g~~~-~L~~----~G~~V~~v~~~~----- 129 (293)
T 1mrz_A 74 F-FRIKDLTP-EGFVERYL---SGVSAVVVGRDFRFGKN------A---SGNAS-FLRK----KGVEVYEIEDVV----- 129 (293)
T ss_dssp H-HHHTTCCH-HHHHHHHC---TTCCEEEEETTCCBSGG------G---CBCHH-HHHH----TTCEEEEECCCE-----
T ss_pred h-HHhhcCCH-HHHHHHHh---cCCCEEEECCCCCCCCC------C---CCCHH-HHHh----CCCEEEEECCEE-----
Confidence 4 3333 44 44444444 9999999999975 221 0 11122 2222 244444332210
Q ss_pred CceeecCCCCCccccccCHHHHHHHHHCCC
Q 011745 413 KKMAFFDPSRAKDFLFISGTKMRTFARSGE 442 (478)
Q Consensus 413 ~~~~~~~p~~~~~~~~iSGT~vR~~L~~G~ 442 (478)
.+-..||.|.+|++|++|.
T Consensus 130 -----------~~~~~iSST~IR~~L~~G~ 148 (293)
T 1mrz_A 130 -----------VQGKRVSSSLIRNLVQEGR 148 (293)
T ss_dssp -----------ETTEECCHHHHHHHHHTTC
T ss_pred -----------eCCccccHhHHHHHHhcCc
Confidence 0113699999999999996
No 35
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=95.72 E-value=0.042 Score=55.29 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=64.2
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccc----cCC---CC-CCCCChHHHHHHHHHHHHcCCCCCC
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL----GGF---TK-ADDVPLDVRMEQHSKVLEDGVLDPE 327 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Pl----vG~---tK-~~Di~~~~Rvr~y~~ll~~~y~p~~ 327 (478)
..|++.=+-+-+|+||..|++.+.+.|.+.|..-.++-..|. ... .. .--.+.+-|.+..+.+= -|
T Consensus 21 ~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~lG------VD 94 (308)
T 3op1_A 21 DSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREG------VE 94 (308)
T ss_dssp CEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHT------CC
T ss_pred CeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHcC------CC
Confidence 468888899999999999998877665555422222333342 111 11 12456678877666432 23
Q ss_pred ceEEEecCCCcccC--ChhHHHHHHHHHHhcCCceeeecCCCC
Q 011745 328 TTIVSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPA 368 (478)
Q Consensus 328 ~~~l~ilP~~mryA--GPREAllHAivRkNyGcTHfIVGRDHA 368 (478)
.++ ++|..-.+| .|.+ -.+-++ +.+++.+++||-|+.
T Consensus 95 -~v~-~~~F~~~~a~ls~e~-Fv~~ll-~~l~~~~ivvG~Dfr 133 (308)
T 3op1_A 95 -ELY-LLDFSSQFASLTAQE-FFATYI-KAMNAKIIVAGFDYT 133 (308)
T ss_dssp -EEE-EECCCHHHHTCCHHH-HHHHHH-HHHTEEEEEEETTCC
T ss_pred -EEE-EecCCHHHHcCCHHH-HHHHHH-HHcCCCEEEECcCCC
Confidence 334 678665444 4544 444455 589999999999964
No 36
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=94.02 E-value=0.066 Score=47.20 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=51.3
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEE--Ec--cccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILL--LH--PLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lL--L~--PlvG-~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~ 330 (478)
+.+++.=+-||+|+||..|++.| .+.+ +-+. +. |.+- ..+.--.+.+.|++..+.+ + .-+.++
T Consensus 3 ~~v~~~G~FD~vH~GH~~li~~a----~~~~---~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~---~--~vd~v~ 70 (143)
T 3glv_A 3 IRVMATGVFDILHLGHIHYLKES----KKLG---DELVVVVARDSTARNNGKIPIFDENSRLALISEL---K--VVDRAI 70 (143)
T ss_dssp CEEEEEECCSSCCHHHHHHHHHH----HTTS---SEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTB---T--TCSEEE
T ss_pred eEEEEEeecCCCCHHHHHHHHHH----HHhC---CCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhc---C--CCCEEE
Confidence 45666669999999999998755 3443 2222 21 1110 1234457889998855432 1 124333
Q ss_pred EEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCC
Q 011745 331 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDP 367 (478)
Q Consensus 331 l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDH 367 (478)
+ + .|.+-+ . ++ +.+|+.++++|-|+
T Consensus 71 ~--~-------~~~~f~-~-~~-~~l~~~~iv~G~d~ 95 (143)
T 3glv_A 71 L--G-------HEGDMM-K-TV-IEVKPDIITLGYDQ 95 (143)
T ss_dssp E--C-------CTTCHH-H-HH-HHHCCSEEEECTTC
T ss_pred E--c-------CchhHH-H-HH-HhcCCCEEEECCCC
Confidence 3 1 233322 3 33 57999999999984
No 37
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=93.98 E-value=0.56 Score=39.85 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=48.4
Q ss_pred EeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccC-----CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEe
Q 011745 259 FAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-----FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSI 333 (478)
Q Consensus 259 vaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG-----~tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~l~i 333 (478)
+..=+-||+|+||..+++.| .+.+ +-+.+-+... ..+..-++.+.|++-.++ + +.. +.++. .
T Consensus 5 ~~~G~FDp~H~GH~~li~~a----~~~~---d~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~-~--~~~--d~v~~-~ 71 (129)
T 1coz_A 5 ITYGTFDLLHWGHIKLLERA----KQLG---DYLVVAISTDEFNLQKQKKAYHSYEHRKLILET-I--RYV--DEVIP-E 71 (129)
T ss_dssp EEEECCCSCCHHHHHHHHHH----HTTS---SEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTT-B--TTC--CEEEE-E
T ss_pred EEEEeCCCCCHHHHHHHHHH----HHhC---CCeEEEEECCHHHhcCCCCCCCCHHHHHHHHHh-c--CCC--CEEEe-C
Confidence 33338999999999998765 3443 2232212110 123457888999886553 2 122 32332 1
Q ss_pred cCCCcccCChhHHHHHHHHHHhcCCceeeecCCCC
Q 011745 334 FPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (478)
Q Consensus 334 lP~~mryAGPREAllHAivRkNyGcTHfIVGRDHA 368 (478)
+ .+.+-+ .. + +.++++++++|-|..
T Consensus 72 ----~---~~~~~~-~~-l-~~~~~~~iv~G~D~~ 96 (129)
T 1coz_A 72 ----K---NWEQKK-QD-I-IDHNIDVFVMGDDWE 96 (129)
T ss_dssp ----C---CSTTHH-HH-H-HHTTCSEEEEEGGGT
T ss_pred ----C---CHHHHH-HH-H-HHhCCcEEEECCCCC
Confidence 1 122222 22 4 457999999999863
No 38
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.50 E-value=0.68 Score=46.24 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=36.0
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCC------C----CCCCChHHHHHHHHHHHH
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT------K----ADDVPLDVRMEQHSKVLE 320 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~t------K----~~Di~~~~Rvr~y~~ll~ 320 (478)
|-||+|.||..+++.| .+. ++-+++-|..-.. | ..-++.+.|++-.+..+.
T Consensus 10 tFdP~h~GHl~~~~~a----~~~---~d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~ 70 (365)
T 1lw7_A 10 KFYPVHTGHINMIYEA----FSK---VDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFK 70 (365)
T ss_dssp CCSSCCHHHHHHHHHH----HTT---CSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTS
T ss_pred eeCCCCHHHHHHHHHH----HHH---CCEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhh
Confidence 9999999999998654 344 2555554554332 0 224999999999988775
No 39
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=80.41 E-value=1.4 Score=39.29 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=35.6
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCC--C--CCCCChHHHHHHHHHHH-Hc
Q 011745 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT--K--ADDVPLDVRMEQHSKVL-ED 321 (478)
Q Consensus 263 TRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~t--K--~~Di~~~~Rvr~y~~ll-~~ 321 (478)
|-||+|.||..+.+.|.+ .+. +-+++-|..... | ..-++.+.|++-.+.++ ++
T Consensus 8 tFDPiH~GHl~l~~~a~~----~~~--d~viv~v~~~~~~~k~~~~~~~~~~R~~ml~~a~~~~ 65 (148)
T 3do8_A 8 TFEPLHEGHKKLIDVAIK----LGG--RDITIGVTSDRMARARIRSVLPFAIRAENVKRYVMRK 65 (148)
T ss_dssp CCSSCCHHHHHHHHHHHH----HHT--TCEEEEEECHHHHHHHSCCCSCHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHH----hCC--CEEEEEECCCccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 899999999999876644 221 234332332221 2 45689999999999888 63
No 40
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=67.44 E-value=3.3 Score=41.01 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHH---hcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEcccc
Q 011745 240 RLSPQQLRKEFD---NRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG 298 (478)
Q Consensus 240 r~tP~E~R~~f~---~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Plv 298 (478)
..|+.|+|+..+ +.| ++|+..=|-+-+|+||..|++.|.+.+- . ....++.||.-
T Consensus 4 ~~~~~el~~~~~~~r~~g-~~V~~vgtfdgLH~GH~sLI~~A~~~ad-~--vVVSffvnP~q 61 (280)
T 2ejc_A 4 IETIEEMKKFSEEMREKK-KTIGFVPTMGYLHEGHLSLVRRARAEND-V--VVVSIFVNPTQ 61 (280)
T ss_dssp ECCHHHHHHHHHHHHHTT-CCEEEEEECSCCCHHHHHHHHHHHHHSS-E--EEEEECCCGGG
T ss_pred EeCHHHHHHHHHHHHhcC-CEEEEEcCCccccHHHHHHHHHHHHhCC-E--EEEEEeCChHH
Confidence 357888987543 334 5566666999999999999987654221 1 11235558863
No 41
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=64.47 E-value=4.4 Score=39.95 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHhcC-CCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccc
Q 011745 239 YRLSPQQLRKEFDNRQ-ADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL 297 (478)
Q Consensus 239 ~r~tP~E~R~~f~~~g-w~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~Pl 297 (478)
.-.|++|+|+...+.. -++|.-+=|=.-+|.||..|++.|.+ +.......+|+||+
T Consensus 6 i~~ti~~lr~~~~~~~~g~~ig~VPTMGaLH~GHlsLv~~Ar~---~~d~vVVSIFVNP~ 62 (264)
T 3n8h_A 6 IADNIKQFHSIRNSLIKQQKIGFVPTMGALHNGHISLIKKAKS---ENDVVIVSIFVNPT 62 (264)
T ss_dssp EECSHHHHHHHHHTSCTTSCEEEEEECSSCCHHHHHHHHHHHH---HCSEEEEEECCCGG
T ss_pred EEcCHHHHHHHHHHHhCCCcEEEECCCcchhHHHHHHHHHHHH---hCCEEEEEEccCcc
Confidence 3468999999987531 13455555899999999999987643 22111234667776
No 42
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=64.23 E-value=2.8 Score=41.72 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChH
Q 011745 239 YRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLD 309 (478)
Q Consensus 239 ~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~ 309 (478)
.-.|++|+|+...+ | ++|.-+=|=.=+|+||..|++.|.+. .......+++||+- ....+|++..
T Consensus 7 i~~ti~~lr~~~~~-g-~~ig~VPTMG~LH~GH~sLi~~A~~~---~d~vVvSifvnP~q-f~~~ed~~~y 71 (283)
T 3uk2_A 7 VISSIQELRDQLRG-Q-NRTAFVPTMGNLHEGHLSLMRLARQH---GDPVVASIFVNRLQ-FGPNEDFDKY 71 (283)
T ss_dssp EECCHHHHHHHTTT-C-SSCEEEEECSSCCHHHHHHHHHHHTT---CSSEEEEECCCGGG-SCTTSCTTTS
T ss_pred EEcCHHHHHHHHHc-C-CeEEEECCCCcccHHHHHHHHHHHHh---CCEEEEEEcCCHHH-cCCccccccc
Confidence 34589999999986 4 44544458999999999999876432 11112357889985 5556665443
No 43
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=60.82 E-value=5.5 Score=40.21 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHh--cCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 011745 239 YRLSPQQLRKEFDN--RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (478)
Q Consensus 239 ~r~tP~E~R~~f~~--~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~R 311 (478)
.-.|++|+|+...+ +.-++|.-+=|=.=+|.||..|++.|.+. .......+|+||+ -....+|++..-|
T Consensus 24 ii~t~~elr~~~~~~r~~g~~IgfVPTMG~LH~GHlsLi~~A~~~---~d~vVVSIFVNP~-QF~~~EDl~~YPR 94 (314)
T 3inn_A 24 IIHTIEELRQALAPARQQGKKIGFVPTMGYLHKGHLELVRRARVE---NDVTLVSIFVNPL-QFGANEDLGRYPR 94 (314)
T ss_dssp EECSHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHHHHH---CSEEEEEECCCGG-GSCTTSSTTTCCC
T ss_pred EEcCHHHHHHHHHHHHHcCCeEEEEcCCCccCHHHHHHHHHHHHh---CCEEEEEECCChh-hcCCCccccccCC
Confidence 34589999988752 22245655568888999999999876542 1111235778887 3445566654433
No 44
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=60.50 E-value=4.8 Score=35.79 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=41.2
Q ss_pred CCCeEEEeCCCCCEEEEEEeccccccCHHHHHHH--hhCCCCCCCcchhhhcccCCcEEEeeeEEE
Q 011745 163 STTNVALLGPTGDLIGILRSIEIYKHNKEERIAR--TWGTTAAGLPYVEEVITPAGNWLVGGDLEV 226 (478)
Q Consensus 163 ~G~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~--vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~ 226 (478)
+|.++-|+|.||++++....++ -+-.|-+ |+-+++++||-.+ ..|+|.|.|++.+
T Consensus 54 ~~~r~~l~d~eG~Il~~~~~~~-----~~~ralrnFi~~sd~~~~P~qk----~ygr~~i~GPf~i 110 (138)
T 3v67_A 54 PRPRVFFSDYNGNVLTTDKRSN-----FQLRAMQNFVTSIEDYNKPKQR----LYGRYMIAGPVPI 110 (138)
T ss_dssp CSCEEEEECTTSCEECCCCSCH-----HHHHHHHHHHHHCSCTTSCEEE----EETTEEEEEEEEE
T ss_pred CCccEEEEcCCCCEecCCcccc-----hhHHHHHHHHHhccCccCchhh----hhCcEEEeCCEEE
Confidence 5778999999999999776543 1223444 4467788899877 3699999999876
No 45
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=58.19 E-value=7.1 Score=39.59 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=55.2
Q ss_pred CeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEE----ccccCC-CCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 011745 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL----HPLGGF-TKADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (478)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL----~PlvG~-tK~~Di~~~~Rvr~y~~ll~~~y~p~~~~~ 330 (478)
++|++.=+-+|+|.||..++++| .+++ +-+.+ .|.+-. +++--++.+-|++..+++ . +. +.+
T Consensus 8 ~~v~~~G~FD~lH~GH~~lL~~A----~~l~---d~LiVgV~~d~~v~~~K~~pi~s~eER~~~l~~l-~--~V--D~V- 74 (341)
T 3elb_A 8 VRVWCDGCYDMVHYGHSNQLRQA----RAMG---DYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAI-K--WV--DEV- 74 (341)
T ss_dssp CEEEEEECCCSCCHHHHHHHHHH----HHTS---SEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHB-T--TC--CEE-
T ss_pred eEEEEEeeCCCCCHHHHHHHHHH----HHhC---CcCEEEeecCHHHhccCCCCCCCHHHHHHHHHHc-C--CC--CEE-
Confidence 46776669999999999998765 4554 32222 221101 113457899999977764 1 22 222
Q ss_pred EEec-CCCcccCChhHHHHHHHHHHhcCCceeeecCCCCC
Q 011745 331 VSIF-PSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (478)
Q Consensus 331 l~il-P~~mryAGPREAllHAivRkNyGcTHfIVGRDHAG 369 (478)
+ .+ |. .-|.|-+ +.++|..++.|-|+..
T Consensus 75 v-~f~~~----~~~~efi------~~~~~d~vV~G~D~~~ 103 (341)
T 3elb_A 75 V-PAAPY----VTTLETL------DKYNCDFCVHGNDITL 103 (341)
T ss_dssp E-ETCCS----SCCHHHH------HHTTCSEEEECSCCCB
T ss_pred E-ecCCC----CCHHHHH------HHhCCCEEEECCCCCC
Confidence 2 22 11 2344442 6899999999999874
No 46
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=52.85 E-value=10 Score=37.66 Aligned_cols=62 Identities=13% Similarity=0.258 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHH---hcCCCeEEee-ccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCC
Q 011745 240 RLSPQQLRKEFD---NRQADAIFAF-QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVP 307 (478)
Q Consensus 240 r~tP~E~R~~f~---~~gw~~VvaF-QTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~ 307 (478)
..|+.|+|+... +.| ++|.-. -.-| +|+||..|++.+.+.+ ......++.||.- ...++|++
T Consensus 5 ~~~~~~l~~~~~~~r~~g-~~I~fVpTmG~-lH~GH~~LI~~a~~~a---~~vVvsffvnP~q-f~~~ed~~ 70 (283)
T 3ag6_A 5 ITTVKEMQHIVKAAKRSG-TTIGFIPTMGA-LHDGHLTMVRESVSTN---DITIVSVFVNPLQ-FGPNEDFD 70 (283)
T ss_dssp ECCHHHHHHHHHHHHHTT-CCEEEEEECSS-CCHHHHHHHHHHHTTS---SEEEEEECCCGGG-CCTTSSTT
T ss_pred EcCHHHHHHHHHHHHhcC-CcEEEEECCcc-ccHHHHHHHHHHHHhC---CEEEEEEeCChhh-cCCccccc
Confidence 358889987543 333 333222 2344 9999999998764421 1112346778863 22345543
No 47
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=52.67 E-value=8.3 Score=38.43 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHh--cCCCeEEeeccCCCCchhhHHHHHHHH
Q 011745 239 YRLSPQQLRKEFDN--RQADAIFAFQLRNPIHNGHALLMNDTR 279 (478)
Q Consensus 239 ~r~tP~E~R~~f~~--~gw~~VvaFQTRNPlHRaHe~l~r~a~ 279 (478)
.-.|++|+|+...+ +.-++|.-+=|=.=+|.||..|++.|.
T Consensus 6 i~~t~~elr~~~~~~r~~g~~IgfVPTMG~LH~GHlsLv~~Ar 48 (287)
T 3q12_A 6 IIETLPLLRQQIRRWRQEGKRIALVPTMGNLHEGHMTLVDEAK 48 (287)
T ss_dssp EECSHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHcCCeEEEEcCCCcccHHHHHHHHHHH
Confidence 34589999988752 222455555577779999999998663
No 48
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=49.86 E-value=8.2 Score=38.16 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCC
Q 011745 240 RLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDV 306 (478)
Q Consensus 240 r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di 306 (478)
..++.|+|+...+.|...|+ |=.-+|+||..|++.+.+.+ .. ....++.||.- ..+++|+
T Consensus 4 ~~~~~~l~~~~~~~gi~~Vp---TmG~lH~GH~~Li~~A~~~a-~~--vVvsff~nP~q-f~~~ed~ 63 (276)
T 1v8f_A 4 VSTVAELRAALPREGVGFVP---TMGYLHRGHLALVERARREN-PF--VVVSVFVNPLQ-FGPGEDY 63 (276)
T ss_dssp ECSHHHHHHHCCSSCEEEEE---ECSSCCHHHHHHHHHHHHHC-SE--EEEEECCCGGG-CCTTSST
T ss_pred EecHHHHHHHHhhcCceEEE---eCCCccHHHHHHHHHHHHhC-CE--EEEEEECCHHH-hCCCccc
Confidence 35789999888555522222 33339999999998775532 11 12346778864 3344544
No 49
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=38.09 E-value=10 Score=37.67 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHh---cCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 011745 239 YRLSPQQLRKEFDN---RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (478)
Q Consensus 239 ~r~tP~E~R~~f~~---~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL~PlvG~tK~~Di~~~~R 311 (478)
.-.|++|+|+...+ .| ++|.-+=|=.-+|.||..|++.|.+ + +. ....+|+||+ -....+|+...-|
T Consensus 6 i~~ti~elr~~~~~~~~~g-~~Ig~VPTMGaLH~GHlsLv~~Ar~-~-d~--VVVSIFVNP~-QF~~~EDl~~YPR 75 (285)
T 3mxt_A 6 VITSVKEAKQIVKDWKSHQ-LSIGYVPTMGFLHDGHLSLVKHAKT-Q-DK--VIVSIFVNPM-QFGPNEDFSSYPR 75 (285)
T ss_dssp EECCHHHHHHHHHHHHHTT-CCEEEEEECSSCCHHHHHHHHHHTT-S-SE--EEEEECCCGG-GCCTTSCTTTSCC
T ss_pred EEcCHHHHHHHHHHHHHcC-CeEEEEcCCCcccHHHHHHHHHHHh-C-CE--EEEEeccCcc-ccCCchhhhcCCC
Confidence 34589999988752 23 4555555888899999999986532 1 11 1235677887 3445666654433
No 50
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=28.89 E-value=54 Score=33.12 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=56.2
Q ss_pred CCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCC--eEEE----ccccCCCC---CCCCChHHHHHHHHHHHHcCCC
Q 011745 254 QADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNP--ILLL----HPLGGFTK---ADDVPLDVRMEQHSKVLEDGVL 324 (478)
Q Consensus 254 gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~--~lLL----~PlvG~tK---~~Di~~~~Rvr~y~~ll~~~y~ 324 (478)
|-+.|+.-=|-+|+|.||..++++| .+++ + -|.+ ++.+-..| .--++.+-|+.+.+++ . |.
T Consensus 197 ~~~iv~~~GsFD~~h~GHl~~L~rA----~~l~---D~~~LiVgV~~d~~v~~~Kg~~~pi~~~~ER~~~v~~~-~--~v 266 (341)
T 3elb_A 197 GETVIYVAGAFDLFHIGHVDFLEKV----HRLA---ERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLAC-R--YV 266 (341)
T ss_dssp TCEEEEEEECCTTCCHHHHHHHHHH----HTTS---SSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHTB-T--TC
T ss_pred CCEEEEEecccCCCCHHHHHHHHHH----HHhC---CCCEEEEEEccCHhhHhhcCCCCCCCCHHHHHHHHHHc-C--CC
Confidence 3344555559999999999998754 4565 4 2332 11111113 2468999999988863 2 44
Q ss_pred CCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCCCCCC
Q 011745 325 DPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGM 370 (478)
Q Consensus 325 p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRDHAGv 370 (478)
+ .+++ .-|+. ... =+.+.+|++-++-|.|+...
T Consensus 267 d--~V~v-~~~~~-----l~~-----~~~~~~~~~~iv~G~d~~~~ 299 (341)
T 3elb_A 267 S--EVVI-GAPYA-----VTA-----ELLSHFKVDLVCHGKTEIIP 299 (341)
T ss_dssp C--EEEE-EECSS-----CCH-----HHHHHTTCSEEEECSSCCCC
T ss_pred C--CEEE-CCCCc-----chH-----HHHHhcCCcEEEECCCCccc
Confidence 3 2444 22221 111 12356799999999987654
No 51
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=28.14 E-value=98 Score=26.68 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=37.7
Q ss_pred ceeeEeccCHHHHhhcCCC-----------CeEEEeCCCCCEEEEEEecccccc-CHHHHHHHhhCCCC
Q 011745 146 SLPIVLAIDDETKERIGST-----------TNVALLGPTGDLIGILRSIEIYKH-NKEERIARTWGTTA 202 (478)
Q Consensus 146 piPItL~V~~e~a~~l~~G-----------~~vaL~d~eG~~lAiL~V~eiy~~-Dk~~ea~~vfGT~d 202 (478)
++|+..+...+.++.+..- -...|+|++|++++.....+.... +-++..+.+..|.-
T Consensus 100 ~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~~~~ 168 (175)
T 1xvq_A 100 NVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATSG 168 (175)
T ss_dssp CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHTC-
T ss_pred CceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHhhcC
Confidence 4488888776666666542 258888999999999875555433 55555566655543
No 52
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=25.99 E-value=42 Score=32.42 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHhcCCCeEEeeccCCCCchhhHHHHHHHHHHHHHcCCCCCeEEE----ccccCCCC-CCCCChHHHHH
Q 011745 239 YRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL----HPLGGFTK-ADDVPLDVRME 313 (478)
Q Consensus 239 ~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~~ale~g~~~~~lLL----~PlvG~tK-~~Di~~~~Rvr 313 (478)
.+.|-.+.+..-...+-.+|+..=|-+|+|.||..++++| .++. .++.|.+ .+.+-..| .--++.+-|++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~V~~~GtFD~~H~GHl~iL~rA----k~lf-~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e 134 (236)
T 3hl4_A 60 VRVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQA----KNLF-PNTYLIVGVCSDELTHNFKGFTVMNENERYD 134 (236)
T ss_dssp CCCCHHHHHHCCCTTSCEEEEEEECCTTCCHHHHHHHHHH----HTSS-SSEEEEEEECCHHHHHHHTCCCSSCHHHHHH
T ss_pred hhccHHHHhcCCCCCCCeEEEEeccCCCCCHHHHHHHHHH----HHhc-CCCeEEEEEcccHHHhhcCCCCCCCHHHHHH
Confidence 4677777766655445556777779999999999998765 3441 1133333 22111112 34789999999
Q ss_pred HHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHhcCCceeeecCC
Q 011745 314 QHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRD 366 (478)
Q Consensus 314 ~y~~ll~~~y~p~~~~~l~ilP~~mryAGPREAllHAivRkNyGcTHfIVGRD 366 (478)
+.+++ . +. +.+++ .-|+. ... =..+.+||+.++.|-|
T Consensus 135 ~v~~~-k--~V--D~Vvv-~~p~~-----l~~-----d~i~~~~~d~Vv~GDd 171 (236)
T 3hl4_A 135 AVQHC-R--YV--DEVVR-NAPWT-----LTP-----EFLAEHRIDFVAHDDI 171 (236)
T ss_dssp HHHTB-T--TC--SEEES-SCCSS-----CCH-----HHHHHTTCCEEEEESS
T ss_pred HHHHh-C--CC--CeEEE-CCcCc-----CcH-----HHHHHcCCCEEEECCc
Confidence 88753 1 33 22322 12222 111 1224789998888866
No 53
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.08 E-value=18 Score=30.73 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=27.9
Q ss_pred ceeeEeeeEEEecccCcee------e-cCCC-CCccccccCHHHHH
Q 011745 398 LNILPFRVAAYDTVEKKMA------F-FDPS-RAKDFLFISGTKMR 435 (478)
Q Consensus 398 i~i~~f~~~~Y~~~~~~~~------~-~~p~-~~~~~~~iSGT~vR 435 (478)
|.|...+..++|..|+... . .||+ +......+||.+|+
T Consensus 65 L~i~~~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~~i~~G~el~ 110 (119)
T 2kdx_A 65 LDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEMR 110 (119)
T ss_dssp EEEEEECCEEECSSSSCEECSCCSTTCCCSSSSSCCCEEEESSCCE
T ss_pred EEEEeccceEEcCCCCCEEeCCCCCCCcCccccCCCcEEecCCeEE
Confidence 6777777789999999764 2 5887 55555578887654
No 54
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=23.01 E-value=1.4e+02 Score=24.17 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=32.8
Q ss_pred ceeeEeccCHHHHhhcCCC--CeEEEeCCCCCEEEEEEeccccc-cCHHHHHHHhhCCCCCCCcc
Q 011745 146 SLPIVLAIDDETKERIGST--TNVALLGPTGDLIGILRSIEIYK-HNKEERIARTWGTTAAGLPY 207 (478)
Q Consensus 146 piPItL~V~~e~a~~l~~G--~~vaL~d~eG~~lAiL~V~eiy~-~Dk~~ea~~vfGT~d~~HPg 207 (478)
++|+..+...+.++.+... -.+.|+|++|+++....-..-+. .+-++..++.-+..+..||+
T Consensus 86 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~~~~~~ 150 (152)
T 3gl3_A 86 EFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNEGHHHH 150 (152)
T ss_dssp CSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC--------
T ss_pred CCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccccccccc
Confidence 3477788777776665432 35788899999988766432221 12333455555655555554
No 55
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=22.93 E-value=39 Score=33.71 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=30.4
Q ss_pred CCCHHHHHHHH---HhcCCCeEEeeccCCCCchhhHHHHHHHHH-HHHHcCCCCCeEEEccc
Q 011745 240 RLSPQQLRKEF---DNRQADAIFAFQLRNPIHNGHALLMNDTRR-RLLEMGYKNPILLLHPL 297 (478)
Q Consensus 240 r~tP~E~R~~f---~~~gw~~VvaFQTRNPlHRaHe~l~r~a~~-~ale~g~~~~~lLL~Pl 297 (478)
..++.++|+.. .+.| ++|...=|=.=+|+||..|++.+.+ .+ +. ....+++||.
T Consensus 15 i~~~~~l~~~~~~~r~~~-~~vg~VpTmG~LH~GH~sLI~~A~~~~a-~~--vVvSffvnP~ 72 (301)
T 3cov_A 15 YSAPGDVADVSRALRLTG-RRVMLVPTMGALHEGHLALVRAAKRVPG-SV--VVVSIFVNPM 72 (301)
T ss_dssp ECSHHHHHHHHHHHHHTT-CEEEEEEECSCCCHHHHHHHHHHHTSTT-EE--EEEEECCCGG
T ss_pred EeCHHHHHHHHHHHHhcC-CcEEEEecCCcccHHHHHHHHHHHHhcC-CE--EEEEEcCChh
Confidence 34788887743 3333 2322222433399999999987643 22 11 1234678886
No 56
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=21.41 E-value=1.6e+02 Score=30.32 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=33.5
Q ss_pred CHHHHHHHHHhcCCCeEEeeccCCC-CchhhHHHHHHHHHHHHHcC
Q 011745 242 SPQQLRKEFDNRQADAIFAFQLRNP-IHNGHALLMNDTRRRLLEMG 286 (478)
Q Consensus 242 tP~E~R~~f~~~gw~~VvaFQTRNP-lHRaHe~l~r~a~~~ale~g 286 (478)
...++++.++.+..+-..|||--.+ +|=||.--++ .+..+.+.|
T Consensus 20 ~~~~L~~~L~~~~~~iy~G~dPTg~sLHlGh~v~l~-~~~~lQ~~G 64 (420)
T 1jil_A 20 DEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFL-TLRRFQEHG 64 (420)
T ss_dssp CHHHHHHHHHHSCCEEEEEECCSSSSCBHHHHHHHH-HHHHHHHTT
T ss_pred CHHHHHHHHcCCCCEEEEeeCCCCCCccHHHHHHHH-HHHHHHHCC
Confidence 4688999998877778899998888 9999965443 334555666
No 57
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=21.01 E-value=1.8e+02 Score=30.02 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=33.4
Q ss_pred CHHHHHHHHHhcCCCeEEeeccCCC-CchhhHHHHHHHHHHHHHcC
Q 011745 242 SPQQLRKEFDNRQADAIFAFQLRNP-IHNGHALLMNDTRRRLLEMG 286 (478)
Q Consensus 242 tP~E~R~~f~~~gw~~VvaFQTRNP-lHRaHe~l~r~a~~~ale~g 286 (478)
...++++.++.+..+-..|||.-.+ +|=||.--++ .+..+.+.|
T Consensus 18 ~~~~L~~~L~~~~~~iy~G~dPTg~sLHlGh~v~l~-~l~~lQ~~G 62 (419)
T 2ts1_A 18 DEDGLRKLLNEERVTLYCGFDPTADSLHIGHLATIL-TMRRFQQAG 62 (419)
T ss_dssp CHHHHHHHHHHSCCEEEEEECCSSSSCBGGGHHHHH-HHHHHHHTT
T ss_pred CHHHHHHHHcCCCCEEEEeeCCCCCCccHHHHHHHH-HHHHHHHCC
Confidence 4678999998777778899998888 9999965443 334555666
No 58
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=20.71 E-value=66 Score=26.84 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=24.1
Q ss_pred HHhhcCCCCeEEEeCCCCCEEEEEEecccccc
Q 011745 157 TKERIGSTTNVALLGPTGDLIGILRSIEIYKH 188 (478)
Q Consensus 157 ~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~~ 188 (478)
.+..+.....+.++|.+|+++|+++..++.+.
T Consensus 108 a~~~~~~~~~lpVvd~~g~~~Giit~~dil~~ 139 (156)
T 3ctu_A 108 VLHKLVDESFLPVVDAEGIFQGIITRKSILKA 139 (156)
T ss_dssp HHHHTTTSSEEEEECTTSBEEEEEETTHHHHH
T ss_pred HHHHHHHcCeEEEEcCCCeEEEEEEHHHHHHH
Confidence 34445544578888888999999999998743
No 59
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=20.14 E-value=60 Score=27.89 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=23.3
Q ss_pred HHhhcCCCCeEEEeCCCCCEEEEEEeccccc
Q 011745 157 TKERIGSTTNVALLGPTGDLIGILRSIEIYK 187 (478)
Q Consensus 157 ~a~~l~~G~~vaL~d~eG~~lAiL~V~eiy~ 187 (478)
.++.+....-+..+|.+|+++|+++..|+.+
T Consensus 108 ~~~~m~~~~~lpVVd~~g~l~GiiT~~Dil~ 138 (156)
T 3k6e_A 108 VLHKLVDESFLPVVDAEGIFQGIITRKSILK 138 (156)
T ss_dssp HHHHTTTSSEEEEECTTSBEEEEEEHHHHHH
T ss_pred HHHHHHHcCCeEEEecCCEEEEEEEHHHHHH
Confidence 3444555555777888999999999999873
Done!