BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011746
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 155/391 (39%), Gaps = 62/391 (15%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSA 187
+Y + P +L++D G W + C Q S T+ + C ++
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLW------VDCDQNY-------VSSTYRPVRCRTS 67
Query: 188 SCRILRKLL-------PPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQ--EANRD 238
C + + P G +N + P N N++ GG A D ++++ + +
Sbjct: 68 QCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVI--NTATGGEVAEDVVSVESTDGSSS 125
Query: 239 GYFSWYP-FLLGCTNNNTSDQNGASGIMG---LDRSPISIISQTNTSY-----FSYCLPS 289
G P F+ C + QN ASG++G L R+ I++ SQ +++ F+ CL
Sbjct: 126 GRVVTVPRFIFSCAPTSLL-QNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSG 184
Query: 290 PYGSTGYITFGR------PDAVNS-KFIKYTPIITTP----------EQSEYYDITITGI 332
S I FG P+ + S K + YTP++T P E S Y I + I
Sbjct: 185 STSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSI 244
Query: 333 SVGGEKLPFNSTYITKLSA-----IIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKAD 387
+ + + N++ ++ SA I + N T L + IY A+ AF K T+
Sbjct: 245 KINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVA 304
Query: 388 DEDDFDTCYD----LSAYETVVVPKITFHFLG-GVDLELDVRGTLVVFSVSQVCLAFAIF 442
F C+ LS VP I V + ++V + + VCL
Sbjct: 305 SVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDG 364
Query: 443 PSD-PNSISLGNVQQRGYEVHYDVAGRRLGF 472
S+ SI +G Q V +D+A R+GF
Sbjct: 365 GSNLRTSIVIGGHQLEDNLVQFDLATSRVGF 395
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 155/391 (39%), Gaps = 62/391 (15%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSA 187
+Y + P +L++D G W + C Q S T+ + C ++
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLW------VDCDQNY-------VSSTYRPVRCRTS 67
Query: 188 SCRILRKLL-------PPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQ--EANRD 238
C + + P G +N + P N N++ GG A D ++++ + +
Sbjct: 68 QCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVI--NTATGGEVAEDVVSVESTDGSSS 125
Query: 239 GYFSWYP-FLLGCTNNNTSDQNGASGIMG---LDRSPISIISQTNTSY-----FSYCLPS 289
G P F+ C + QN ASG++G L R+ I++ SQ +++ F+ CL
Sbjct: 126 GRVVTVPRFIFSCAPTSLL-QNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSG 184
Query: 290 PYGSTGYITFGR------PDAVNS-KFIKYTPIITTP----------EQSEYYDITITGI 332
S I FG P+ + S K + YTP++T P E S Y I + I
Sbjct: 185 STSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSI 244
Query: 333 SVGGEKLPFNSTYITKLSA-----IIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKAD 387
+ + + N++ ++ SA I + N T L + IY A+ AF K T+
Sbjct: 245 KINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVA 304
Query: 388 DEDDFDTCYD----LSAYETVVVPKITFHFLG-GVDLELDVRGTLVVFSVSQVCLAFAIF 442
F C+ LS VP I V + ++V + + VCL
Sbjct: 305 SVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDG 364
Query: 443 PSD-PNSISLGNVQQRGYEVHYDVAGRRLGF 472
S+ SI +G Q V +D+A R+GF
Sbjct: 365 GSNLRTSIVIGGHQLEDNLVQFDLATSRVGF 395
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 140/378 (37%), Gaps = 81/378 (21%)
Query: 143 SLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNG-- 200
SL+LD L W+ CK + ++IPC+S +C +L P G
Sbjct: 25 SLVLDVAGPLVWSTCK----------------GGQPPAEIPCSSPTC-LLANAYPAPGCP 67
Query: 201 QDNCSSEE----C---PYNIAYADNSSDGGFWAADRITIQEANRDGYFSWY--PFLLGCT 251
+C S++ C PYN + G + R + S L C
Sbjct: 68 APSCGSDKHDKPCTAYPYN--PVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACA 125
Query: 252 NNN--TSDQNGASGIMGLDRSPISIISQTNTSY-----FSYCLPSPYGSTGYITFGRPDA 304
+ S G++G+ GL S +++ +Q ++ F CLP+ G G FG
Sbjct: 126 PSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT--GGPGVAIFGGGPV 183
Query: 305 VNSKF---IKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITR 361
+F + YTP++T +Y I+ I VG ++P + ++ TR
Sbjct: 184 PWPQFTQSMPYTPLVTKGGSPAHY-ISARSIVVGDTRVPVPEGALATGGVMLS-----TR 237
Query: 362 LPSPIYAALR-SAFRKRMMKYKKTKADDEDD-------------FDTCYD-------LSA 400
LP Y LR +R M + K A + F CYD L
Sbjct: 238 LP---YVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGG 294
Query: 401 YETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAF------AIFPSDPNSISLGNV 454
Y VP + GG D + + ++V C+AF A ++ LG
Sbjct: 295 YA---VPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGA 351
Query: 455 QQRGYEVHYDVAGRRLGF 472
Q + + +D+ +RLGF
Sbjct: 352 QMEDFVLDFDMEKKRLGF 369
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 136/370 (36%), Gaps = 65/370 (17%)
Query: 143 SLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNG-- 200
SL+LD L W+ C + ++IPC+S +C +L P G
Sbjct: 25 SLVLDVAGPLVWSTCD----------------GGQPPAEIPCSSPTC-LLANAYPAPGCP 67
Query: 201 QDNCSSEE----C---PYNIAYADNSSDGGFWAADRITIQEANRDGYFSWY--PFLLGCT 251
+C S++ C PYN + G + R + S L C
Sbjct: 68 APSCGSDKHDKPCTAYPYN--PVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACA 125
Query: 252 NNN--TSDQNGASGIMGLDRSPISIISQTNTSY-----FSYCLPSPYGSTGYITFGRPDA 304
+ S G++G+ GL S +++ +Q ++ F CLP+ G G FG
Sbjct: 126 PSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT--GGPGVAIFGGGPV 183
Query: 305 VNSKF---IKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITR 361
+F + YTP++T +Y I+ I VG ++P + ++ +
Sbjct: 184 PWPQFTQSMPYTPLVTKGGSPAHY-ISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVL 242
Query: 362 LPSPIYAALRSAFRKRMMKYKKTKA------DDEDDFDTCYD-------LSAYETVVVPK 408
L +Y L AF K + A + F CYD L Y VP
Sbjct: 243 LRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA---VPN 299
Query: 409 ITFHFLGGVDLELDVRGTLVVFSVSQVCLAF------AIFPSDPNSISLGNVQQRGYEVH 462
+ GG D + + ++V C+AF A ++ LG Q + +
Sbjct: 300 VQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLD 359
Query: 463 YDVAGRRLGF 472
+D+ +RLGF
Sbjct: 360 FDMEKKRLGF 369
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/369 (20%), Positives = 132/369 (35%), Gaps = 61/369 (16%)
Query: 142 VSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQ 201
SL+LD L W+ C+ ++ ++I C+S +C +L P G
Sbjct: 26 ASLVLDVAGLLVWSTCE----------------GGQSPAEIACSSPTC-LLANAYPAPG- 67
Query: 202 DNCSSEECPYN------IAYADNSSDGGFWAADRITIQ------EANRDGYFSWYPFLLG 249
C + C + AY N G A + + N+ L
Sbjct: 68 --CPAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFHTRFAANTTDGNKPVSEVNVRVLAA 125
Query: 250 CTNNN--TSDQNGASGIMGLDRSPISIISQTNTSY-----FSYCLPSPYGSTGYITFGR- 301
C + S G++G+ GL S +++ SQ ++ F CLP+ G G FG
Sbjct: 126 CAPSKLLASLPRGSTGVAGLAGSGLALPSQVASAQKVPNKFLLCLPT--GGPGVAIFGGG 183
Query: 302 --PDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEI 359
P ++ + YTP++ +Y I+ I V ++P + + ++ +
Sbjct: 184 PLPWPQFTQSMDYTPLVAKGGSPAHY-ISARSIKVENTRVPISERALATGGVMLSTRLPY 242
Query: 360 TRLPSPIYAALRSAFRKRMMKYKKTKA------DDEDDFDTCYDLSAYET----VVVPKI 409
L +Y L AF K + A F+ CYD VP +
Sbjct: 243 VLLRRDVYRPLVDAFTKALAAQPANGAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNV 302
Query: 410 TFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFP------SDPNSISLGNVQQRGYEVHY 463
GG D + + ++V C+AF ++ LG Q + + +
Sbjct: 303 LLELDGGSDWAMTGKNSMVDVKPGTACVAFVEMKGVDAGDGSAPAVILGGAQMEDFVLDF 362
Query: 464 DVAGRRLGF 472
D+ +RLGF
Sbjct: 363 DMEKKRLGF 371
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 101/270 (37%), Gaps = 57/270 (21%)
Query: 133 VAIGEPKQYVSLLLDTGSDLTWT-----QCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSA 187
V++G KQ ++++DTGS W QC + C + F PS S ++ +
Sbjct: 18 VSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSYKNLGA--- 72
Query: 188 SCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDG-------Y 240
+ I Y D S+ G W D +TI + G
Sbjct: 73 ----------------------AFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQ 110
Query: 241 FSWYPFLLG---CTNNNTSDQNGASGIMGLDRSPISIISQ--TNTSYFSYCLPSPYGSTG 295
S +LG +N D +G D P+++ Q T+ +S L SP TG
Sbjct: 111 TSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETG 170
Query: 296 YITFGRPDAVNSKFIKYTPIITTPE--QSEYYDITITGISVGGEKLPFNSTYITKLSAII 353
I FG D KY+ + + S+ I++ +++ G F A++
Sbjct: 171 TIIFGGVDNA-----KYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGD------GALL 219
Query: 354 DSGNEITRLPSPIYAALRSAFRKRMMKYKK 383
DSG +T PS A L R+++ +
Sbjct: 220 DSGTTLTYFPSDFAAQLADKAGARLVQVAR 249
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 141/373 (37%), Gaps = 60/373 (16%)
Query: 126 VDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH---CSQQRDPFFDPSKSKTFSKI 182
++EY I V+IG P Q LL DTGS TW K C C R FFDPS S TF
Sbjct: 17 LEEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSR--FFDPSASSTFKAT 74
Query: 183 PCNSASCRILRKLLPPNG---QDNCSSEECPYN---IAYADNSSDGGFWAADRITIQEAN 236
N I NG +D+ + + +AY DN A++ +
Sbjct: 75 NYN---LNITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGP---TAEQSPNADIF 128
Query: 237 RDGYF-SWYPFLLGCTNNNTSDQNGASGIM---GLDRSPI-SIISQTNTSYFSYCLPSPY 291
DG F + YP S N + GL SP+ S+ TN+
Sbjct: 129 LDGLFGAAYPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMNTNS----------- 177
Query: 292 GSTGYITFGRPDAVNSKF----IKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT 347
TG + FG VN+ I YT +++ ++D +TGI+V G + +
Sbjct: 178 -GTGEVVFG---GVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGSA----AVRFS 229
Query: 348 KLSAI-IDSGNEITRLPSP-----IYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAY 401
+ A ID+G +PS + AAL A + + Y S
Sbjct: 230 RPQAFTIDTGTNFFIMPSSAASKIVKAALPDATETQQGWVVPCAS---------YQNSKS 280
Query: 402 ETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEV 461
+V + + +++ + V L+ S F I P N +GN+ R +
Sbjct: 281 TISIVMQKSGSSSDTIEISVPVSKMLLPVDQSNETCMFIILPDGGNQYIVGNLFLRFFVN 340
Query: 462 HYDVAGRRLGFGP 474
YD R+GF P
Sbjct: 341 VYDFGNNRIGFAP 353
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 15/178 (8%)
Query: 310 IKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAA 369
I YTPI ++ YY I I + +GG+ L + AI+DSG + RLP ++ A
Sbjct: 186 IWYTPI----KEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDA 241
Query: 370 LRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFH---------FLGGVDLE 420
+ A + + + + C+ S PKI+ + F + +
Sbjct: 242 VVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQ 301
Query: 421 LDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478
L ++ ++ ++ C F I PS N++ +G G+ V +D A +R+GF C+
Sbjct: 302 LYIQ-PMMGAGLNYECYRFGISPST-NALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 119 AKINNTAVDE---YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSK 175
A ++N D YY+ + IG P Q + +L+DTGS P + D +FD +
Sbjct: 2 AMVDNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYI----DTYFDTER 57
Query: 176 SKTF 179
S T+
Sbjct: 58 SSTY 61
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/382 (21%), Positives = 142/382 (37%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 57
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ IQ +N +G
Sbjct: 58 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEG 117
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 118 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQSE 165
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 166 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 219
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 220 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 279
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 280 FPVISLYLMGEVT-QQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 337
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 338 MEGFYVVFDRARKRIGFAVSAC 359
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/382 (21%), Positives = 142/382 (37%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 60
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ IQ +N +G
Sbjct: 61 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEG 120
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 121 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQSE 168
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 169 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 222
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 223 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 282
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 283 FPVISLYLMGEVT-QQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 340
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 341 MEGFYVVFDRARKRIGFAVSAC 362
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/382 (21%), Positives = 142/382 (37%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 58
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ IQ +N +G
Sbjct: 59 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEG 118
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 119 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQSE 166
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 167 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 220
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 221 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 280
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 281 FPVISLYLMGEVT-QQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 338
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 339 MEGFYVVFDRARKRIGFAVSAC 360
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 126 VDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH---CSQQRDPFFDPSKSKTFSKI 182
++EY I V+IG P Q LL DTGS TW K C + C +R FFDPS S TF +
Sbjct: 17 LEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKR--FFDPSSSSTFKET 74
Query: 183 PCN 185
N
Sbjct: 75 DYN 77
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 17/170 (10%)
Query: 310 IKYTPIITTPEQSEYYDITITGISV-GGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYA 368
I+YT ++ + ++D +TG+ + G + + F+ + ID+G PS
Sbjct: 196 IQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQ----AFTIDTGTNFFIAPS---- 247
Query: 369 ALRSAFRKRMMKYKKTKADDEDDFDTC----YDLSAYETVVVPKITFHFLGGVDLELDVR 424
+F ++++K A + T Y S +V + + +D+ + +
Sbjct: 248 ----SFAEKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPIS 303
Query: 425 GTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGP 474
L+ S F + P N +GN+ R + YD R+GF P
Sbjct: 304 KMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAP 353
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 142/382 (37%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 73
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 74 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 133
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 134 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 181
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 182 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 235
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A ++ + K + C+ +
Sbjct: 236 YNYDKSIVDSGTTNLRLPKKVFEAAVASIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 295
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 296 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 353
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 354 MEGFYVVFDRARKRIGFAVSAC 375
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 66
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 67 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 126
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 127 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 174
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 175 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 228
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 229 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 288
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 289 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 346
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 347 MEGFYVVFDRARKRIGFAVSAC 368
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 60
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 61 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 120
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 121 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 168
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 169 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 222
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 223 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 282
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 283 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 340
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 341 MEGFYVVFDRARKRIGFAVSAC 362
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 63
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 64 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 123
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 124 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 171
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 172 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 225
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 226 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 285
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 286 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 343
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 344 MEGFYVVFDRARKRIGFAVSAC 365
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 61
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 62 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 121
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 122 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 169
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 170 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 223
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 224 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 283
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 284 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 341
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 342 MEGFYVVFDRARKRIGFAVSAC 363
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 62
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 63 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 122
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 123 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 170
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 171 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 224
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 225 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 284
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 285 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 342
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 343 MEGFYVVFDRARKRIGFAVSAC 364
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 63
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 64 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 123
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 124 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 171
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 172 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 225
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 226 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 285
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 286 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 343
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 344 MEGFYVVFDRARKRIGFAVSAC 365
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 73
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 74 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 133
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 134 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 181
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 182 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 235
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 236 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 295
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 296 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 353
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 354 MEGFYVVFDRARKRIGFAVSAC 375
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 58
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 59 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 118
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 119 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 166
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 167 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 220
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 221 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 280
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 281 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 338
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 339 MEGFYVVFDRARKRIGFAVSAC 360
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 78
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 79 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 138
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 139 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 186
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 187 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 240
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 241 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 300
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 301 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 358
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 359 MEGFYVVFDRARKRIGFAVSAC 380
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 142/382 (37%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 40 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 83
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q + E P+ ++ +D+ I +N +G
Sbjct: 84 STYRDLRKGVYVPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 143
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 144 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 191
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 192 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 245
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 246 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 305
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 306 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 363
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 364 MEGFYVVFDRARKRIGFAVSAC 385
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 66
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 67 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 126
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 127 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 174
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 175 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 228
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 229 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 288
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 289 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 346
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 347 MEGFYVVFDRARKRIGFAVSAC 368
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 77
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 78 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 137
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 138 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 185
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 186 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 239
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 240 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 299
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 300 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 357
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 358 MEGFYVVFDRARKRIGFAVSAC 379
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 61
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 62 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 121
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 122 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 169
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 170 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 223
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 224 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 283
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 284 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 341
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 342 MEGFYVVFDRARKRIGFAVSAC 363
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 63
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 64 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 123
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 124 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 171
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 172 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 225
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 226 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 285
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 286 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 343
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 344 MEGFYVVFDRARKRIGFAVSAC 365
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 61
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 62 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 121
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 122 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 169
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 170 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 223
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 224 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 283
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 284 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 341
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 342 MEGFYVVFDRARKRIGFAVSAC 363
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 76
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 77 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 136
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 137 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 184
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 185 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 238
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 239 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 298
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 299 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 356
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 357 MEGFYVVFDRARKRIGFAVSAC 378
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 61
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 62 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 121
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 122 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 169
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 170 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 223
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 224 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 283
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 284 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 341
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 342 MEGFYVVFDRARKRIGFAVSAC 363
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 77
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 78 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 137
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 138 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 185
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 186 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 239
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 240 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 299
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 300 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 357
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 358 MEGFYVVFDRARKRIGFAVSAC 379
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 76
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 77 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 136
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 137 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 184
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 185 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 238
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 239 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 298
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 299 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 356
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 357 MEGFYVVFDRARKRIGFAVSAC 378
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 74
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 75 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 134
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 135 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 182
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 183 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 236
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 237 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 296
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 297 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 354
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 355 MEGFYVVFDRARKRIGFAVSAC 376
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 61
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 62 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 121
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 122 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 169
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 170 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 223
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 224 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 283
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 284 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 341
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 342 MEGFYVVFDRARKRIGFAVSAC 363
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 78
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 79 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 138
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 139 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 186
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 187 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 240
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 241 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 300
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 301 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 358
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 359 MEGFYVVFDRARKRIGFAVSAC 380
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 75
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 76 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 135
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 136 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 183
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 184 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 237
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 238 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 297
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 298 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 355
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 356 MEGFYVVFDRARKRIGFAVSAC 377
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 64
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 65 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 124
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 125 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 172
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 173 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 226
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 227 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 286
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 287 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 344
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 345 MEGFYVVFDRARKRIGFAVSAC 366
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 312 YTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALR 371
YTPI + YY++ I + + G+ L + +I+DSG RLP ++ A
Sbjct: 182 YTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAV 237
Query: 372 SAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLV--- 428
+ + K + C+ + P I+ + +G V + R T++
Sbjct: 238 KSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQ 296
Query: 429 -------VFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNC 477
V + C FAI S ++ +G V G+ V +D A +R+GF C
Sbjct: 297 YLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 351
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 76
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 77 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 136
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 137 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 184
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 185 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 238
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 239 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 298
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 299 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 356
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 357 MEGFYVVFDRARKRIGFAVSAC 378
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 73
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 74 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 133
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 134 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 181
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 182 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 235
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 236 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 295
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 296 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 353
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 354 MEGFYVVFDRARKRIGFAVSAC 375
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 142/382 (37%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 77
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q + E P+ ++ +D+ I +N +G
Sbjct: 78 STYRDLRKGVYVPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 137
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 138 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 185
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 186 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 239
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 240 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 299
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 300 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 357
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 358 MEGFYVVFDRARKRIGFAVSAC 379
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 73
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 74 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 133
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 134 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 181
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 182 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 235
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 236 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 295
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 296 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 353
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 354 MEGFYVVFDRARKRIGFAVSAC 375
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 97
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 98 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 157
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 158 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 205
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 206 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 259
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 260 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 319
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 320 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 377
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 378 MEGFYVVFDRARKRIGFAVSAC 399
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 142/382 (37%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 97
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q + E P+ ++ +D+ I +N +G
Sbjct: 98 STYRDLRKGVYVPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 157
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 158 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 205
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 206 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 259
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 260 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 319
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 320 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 377
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 378 MEGFYVVFDRARKRIGFAVSAC 399
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 142/382 (37%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 73
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q + E P+ ++ +D+ I +N +G
Sbjct: 74 STYRDLRKGVYVPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 133
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 134 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 181
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 182 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 235
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 236 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 295
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 296 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 353
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 354 MEGFYVVFDRARKRIGFAVSAC 375
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 77
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 78 STYRDLRKGVYVPYCQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 137
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 138 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 185
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 186 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 239
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 240 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 299
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 300 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 357
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 358 MEGFYVVFDRARKRIGFAVSAC 379
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 142/382 (37%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 77
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q + E P+ ++ +D+ I +N +G
Sbjct: 78 STYRDLRKGVYVPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 137
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 138 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 185
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 186 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 239
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 240 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 299
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 300 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 357
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 358 MEGFYVVFDRARKRIGFAVSAC 379
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 80
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 81 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 140
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 141 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 188
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 189 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 242
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 243 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 302
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 303 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 360
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 361 MEGFYVVFDRARKRIGFAVSAC 382
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 120
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 121 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 180
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 181 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 228
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 229 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 282
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 283 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 342
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 343 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 400
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 401 MEGFYVVFDRARKRIGFAVSAC 422
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 120
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 121 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 180
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 181 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 228
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 229 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 282
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 283 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 342
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 343 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 400
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 401 MEGFYVVFDRARKRIGFAVSAC 422
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 144/373 (38%), Gaps = 90/373 (24%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQ---RDPFFDPSKSKTFSKIPCN 185
Y+ ++IG P Q +L DTGS W P ++C Q F+PS+S T+S
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWV---PSVYCQSQACTSHSRFNPSESSTYST---- 66
Query: 186 SASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEA---NRDGYFS 242
NGQ +++ Y S GF+ D +T+Q N++
Sbjct: 67 -------------NGQT--------FSLQYGSGSLT-GFFGYDTLTVQSIQVPNQE---- 100
Query: 243 WYPFLLGCTNNNTSDQ---NGASGIMGLDRSPISIISQT------------NTSYFSYCL 287
G + N GIMGL +S+ T + FS L
Sbjct: 101 -----FGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYL 155
Query: 288 PSPYGST-GYITFGRPD-AVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
+ GS+ G + FG D ++ + I + P+ Q Y+ I I +GG+ + S
Sbjct: 156 SNQQGSSGGAVVFGGVDSSLYTGQIYWAPVT----QELYWQIGIEEFLIGGQASGWCS-- 209
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
AI+D+G + +P +AL A + +Y + + C +
Sbjct: 210 -EGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFLVN-------CNSIQN----- 256
Query: 406 VPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFPSDPNSIS------LGNVQQRGY 459
+P +TF + GV+ L + S + C + P+ +S + LG+V R Y
Sbjct: 257 LPSLTF-IINGVEFPLPPSS--YILSNNGYC-TVGVEPTYLSSQNGQPLWILGDVFLRSY 312
Query: 460 EVHYDVAGRRLGF 472
YD+ R+GF
Sbjct: 313 YSVYDLGNNRVGF 325
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 76 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 119
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 120 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 179
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 180 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 227
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 228 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 281
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 282 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 341
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 342 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 399
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 400 MEGFYVVFDRARKRIGFAVSAC 421
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 77
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 78 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 137
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 138 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 185
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 186 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 239
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 240 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 299
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 300 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSCGTV-MGAVI 357
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 358 MEGFYVVFDRARKRIGFAVSAC 379
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 142/382 (37%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 77
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q + E P+ ++ +D+ I +N +G
Sbjct: 78 STYRDLRKGVYVPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 137
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 138 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 185
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 186 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 239
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 240 YNYDKSIVDSGCTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 299
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S ++ +G V
Sbjct: 300 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVI 357
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 358 MEGFYVVFDRARKRIGFAVSAC 379
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 140/382 (36%), Gaps = 69/382 (18%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSD--LTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNS 186
YY+ + +G P Q +++L+DTGS P +H QR S
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL----------------S 77
Query: 187 ASCRILRK-LLPPNGQDNCSSE------ECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
++ R LRK + P Q E P+ ++ +D+ I +N +G
Sbjct: 78 STYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEG 137
Query: 240 YFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF--------------SY 285
+LG + + + L+ S++ QT+ S
Sbjct: 138 -------ILGLAYAEIARPDDS-----LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSE 185
Query: 286 CLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTY 345
L S GS I G ++ + + YTPI + YY++ I + + G+ L +
Sbjct: 186 VLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKE 239
Query: 346 ITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVV 405
+I+DSG RLP ++ A + + K + C+ +
Sbjct: 240 YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNI 299
Query: 406 VPKITFHFLGGVDLELDVRGTLV----------VFSVSQVCLAFAIFPSDPNSISLGNVQ 455
P I+ + +G V + R T++ V + C FAI S + +G V
Sbjct: 300 FPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT-CMGAVI 357
Query: 456 QRGYEVHYDVAGRRLGFGPGNC 477
G+ V +D A +R+GF C
Sbjct: 358 MEGFYVVFDRARKRIGFAVSAC 379
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 105/280 (37%), Gaps = 59/280 (21%)
Query: 117 FPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKS 176
P +NN V Y + IG KQ ++++DTGS W + C + R P +S
Sbjct: 3 IPVTLNNEHV-SYAADITIGSNKQKFNVIVDTGSSDLWVP-DASVTCDKPR-----PGQS 55
Query: 177 KTFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEAN 236
F K + + P + P+ I Y D SS G D + A+
Sbjct: 56 ADFCK----------GKGIYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGAS 105
Query: 237 RDGYFSWYPFLLGCTNNNTSDQNGAS---GIMGL-----------DRSPISIISQ--TNT 280
T +D S GI+G+ D P+++ +Q
Sbjct: 106 -------------ITKQVFADITKTSIPQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAK 152
Query: 281 SYFSYCLPSPYGSTGYITFGRPDAVNSKFIKYT-PIITTPEQSE-YYDITITGISVGGEK 338
+ +S L SP +TG I FG D KY+ +I P S+ IT+ + G+
Sbjct: 153 NAYSLYLNSPNAATGQIIFGGVDKA-----KYSGSLIAVPVTSDRELRITLNSLKAVGKN 207
Query: 339 LPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRM 378
+ N + ++DSG IT L + + AF+ +
Sbjct: 208 INGN------IDVLLDSGTTITYLQQDVAQDIIDAFQAEL 241
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 112/277 (40%), Gaps = 50/277 (18%)
Query: 118 PAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSK 177
P ++N V Y + +G Q +++++DTGS W P ++ Q
Sbjct: 4 PVTLHNEQV-TYAADITVGSNNQKLNVIVDTGSSDLWV---PDVNVDCQV---------- 49
Query: 178 TFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANR 237
T+S + C+ + P+G P+ I Y D SS G D +
Sbjct: 50 TYSDQTADF--CK-QKGTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTVGF----- 101
Query: 238 DGYFSWYPFLLGCTNNNTSDQNGASGIMGL-----------DRSPISIISQ--TNTSYFS 284
G S +L ++ + DQ GI+G+ D P+++ Q + +S
Sbjct: 102 -GGVSIKNQVLADVDSTSIDQ----GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYS 156
Query: 285 YCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSE-YYDITITGISVGGEKLPFNS 343
L SP +TG I FG D N+K+ +I P S+ I++ + V G+ + ++
Sbjct: 157 LYLNSPDAATGQIIFGGVD--NAKY--SGSLIALPVTSDRELRISLGSVEVSGKTINTDN 212
Query: 344 TYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMK 380
+ ++DSG IT L + + AF ++ +
Sbjct: 213 -----VDVLLDSGTTITYLQQDLADQIIKAFNGKLTQ 244
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 137/385 (35%), Gaps = 108/385 (28%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSA 187
+Y + V +G P SLL+DTGS TW K++ K +SA
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGAD------------------KSYVKTSTSSA 54
Query: 188 SCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFL 247
+ K+ G + S E Y D + G + +I A+RD F
Sbjct: 55 TS---DKVSVTYGSGSFSGTE------YTDTVTLGSL-TIPKQSIGVASRDSGF------ 98
Query: 248 LGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYFSYCLP------------------- 288
+G GI+G+ P+ + T + + S +P
Sbjct: 99 -----------DGVDGILGV--GPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAV 145
Query: 289 ------SPYGSTGYITFGRPDAVNSKF---IKYTPIITTPEQSEYYDITITGISVGGEKL 339
S + G +TFG D+ SK+ I YTPI +T S Y+ I + I G
Sbjct: 146 SFEPTTSESSTNGELTFGATDS--SKYTGSITYTPITSTSPASAYWGINQS-IRYGSSTS 202
Query: 340 PFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLS 399
+ST + I+D+G +T + S +A KYKK D+ L+
Sbjct: 203 ILSST-----AGIVDTGTTLTLIASDAFA-----------KYKKATGAVADNNTGLLRLT 246
Query: 400 AYETVVVPKITFHFLGGVDLELDVRG--------TLVVFSVSQVCLAFAIFPSDPNS--- 448
+ + + F +GG EL T + S S V L SD
Sbjct: 247 TAQYANLQSL-FFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLD 305
Query: 449 -ISLGNVQQRGYEVHYDVAGRRLGF 472
I+ +R Y V YD +RLG
Sbjct: 306 FINGLTFLERFYSV-YDTTNKRLGL 329
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 113/277 (40%), Gaps = 50/277 (18%)
Query: 118 PAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSK 177
P ++N V Y + +G Q +++++DTGS W P ++ Q
Sbjct: 4 PVTLHNEQV-TYAADITVGSNNQKLNVIVDTGSSDLWV---PDVNIDCQV---------- 49
Query: 178 TFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANR 237
T+S + C+ + P+G P++I Y D SS G D +
Sbjct: 50 TYSDQTADF--CK-QKGTYDPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTVGF----- 101
Query: 238 DGYFSWYPFLLGCTNNNTSDQNGASGIMGL-----------DRSPISIISQ--TNTSYFS 284
G S +L ++ + DQ GI+G+ D P+++ Q + +S
Sbjct: 102 -GGVSIKNQVLADVDSTSIDQ----GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYS 156
Query: 285 YCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSE-YYDITITGISVGGEKLPFNS 343
L SP +TG I FG D N+K+ +I P S+ I++ + V G+ + ++
Sbjct: 157 LYLNSPDSATGQIIFGGVD--NAKY--SGSLIALPVTSDRELRISLGSVEVSGKTINTDN 212
Query: 344 TYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMK 380
+ ++DSG IT L + + AF ++ +
Sbjct: 213 -----VDVLLDSGTTITYLQQDLADQIIKAFNGKLTQ 244
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSA 187
EYY V IG P + +L DTGS W C +C R +DP++S T+
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGS-RQTKYDPNQSSTYQ------- 67
Query: 188 SCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITI 232
++ ++I+Y D SS G A D + +
Sbjct: 68 ------------------ADGRTWSISYGDGSSASGILAKDNVNL 94
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 139/371 (37%), Gaps = 69/371 (18%)
Query: 120 KINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQ---RDPFFDPSKS 176
++ N A EYY V++IG P + ++ DTGS W HCS Q F P +S
Sbjct: 5 QMKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSS---HCSAQACSNHNKFKPRQS 61
Query: 177 KTF---SKIPCNSASCRILRKLLPPNGQDNCS--SEECPYNIAYADNSSDGGFWAADRIT 231
T+ K + +R +L GQD S P + G F AA
Sbjct: 62 STYVETGKTVDLTYGTGGMRGIL---GQDTVSVGGGSDPNQELGESQTEPGPFQAA---- 114
Query: 232 IQEANRDGYFSW-YPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYFSYCLPSP 290
A DG YP + D G+ ++ D FS+ L
Sbjct: 115 ---APFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKD-------------LFSFYLSGG 158
Query: 291 YGSTGYITFGRPDAVNSKF---IKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT 347
+ + G D NS + I + P+ +Y+ + + GI+V G+ +
Sbjct: 159 GANGSEVMLGGVD--NSHYTGSIHWIPVTA----EKYWQVALDGITVNGQ-----TAACE 207
Query: 348 KLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVP 407
AI+D+G +++ +P+ A +MK + + C + + +P
Sbjct: 208 GCQAIVDTGT--SKIVAPVSA------LANIMKDIGASENQGEMMGNCASVQS-----LP 254
Query: 408 KITFHFLGGVDLELDVRGTLVVFSVSQVC---LAFAIFPSDPNSISL-GNVQQRGYEVHY 463
ITF G ++ + + + C L + PS+ + + + G+V R Y Y
Sbjct: 255 DITFTING---VKQPLPPSAYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIY 311
Query: 464 DVAGRRLGFGP 474
D ++GF P
Sbjct: 312 DRTNNKVGFAP 322
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 106/275 (38%), Gaps = 54/275 (19%)
Query: 118 PAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWT-QCKPCIHCSQQRDPFFDPSKS 176
P K+ N V Y + +G KQ +++++DTGS W + Q +DP F
Sbjct: 4 PVKLINEQV-SYASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNF----- 57
Query: 177 KTFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEAN 236
C + N +S P++I Y D ++ G W D I
Sbjct: 58 -------CKNEGTYSPSSSSSSQ---NLNS---PFSIEYGDGTTSQGTWYKDTIGF---- 100
Query: 237 RDGYFSWYPFLLGCTNNNTSDQNGASGIMGL-----------DRSPISIISQ--TNTSYF 283
G S + + DQ GI+G+ D P+++ +Q + + +
Sbjct: 101 --GGISITKQQFADVTSTSVDQ----GILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAY 154
Query: 284 SYCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSE-YYDITITGISVGGEKLPFN 342
S L S ++G I FG D N+K+ +I P S+ I + + V G+ +
Sbjct: 155 SLYLNSRQATSGQIIFGGVD--NAKYSG--TLIALPVTSDNELRIHLNTVKVAGQSIN-- 208
Query: 343 STYITKLSAIIDSGNEITRLPSPIYAALRSAFRKR 377
+ ++DSG IT L + + SAF +
Sbjct: 209 ----ADVDVLLDSGTTITYLQQGVADQVISAFNGQ 239
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSA 187
EYY V IG P + +L DTGS W C +C + + DP++S T+
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKY-DPNQSSTYQ------- 67
Query: 188 SCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITI 232
++ ++I+Y D SS G A D + +
Sbjct: 68 ------------------ADGRTWSISYGDGSSASGILAKDNVNL 94
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 100/263 (38%), Gaps = 63/263 (23%)
Query: 120 KINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSK 177
++++ A +Y +G+ Q L+ DTGS W K C I CS + +D SKSK
Sbjct: 7 ELDDVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKH--LYDSSKSK 64
Query: 178 TFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANR 237
++ K D E I Y + GF++ D +T+
Sbjct: 65 SYEK--------------------DGTKVE-----ITYGSGTV-RGFFSKDLVTL----- 93
Query: 238 DGYFSW-YPFLLGCTNNNTSDQNGAS---GIMGLDRSPISIIS------------QTNTS 281
GY S Y F+ ++ A+ GI+GL +SI S + + +
Sbjct: 94 -GYLSLPYKFIEVTDTDDLEPLYTAAEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDQA 152
Query: 282 YFSYCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPF 341
F++ LP +GY+T G + KF + ++ + + + F
Sbjct: 153 LFTFYLPVHDKHSGYLTIG---GIEEKFYEGELTYEKLNHDLFWQVDL--------DVNF 201
Query: 342 NSTYITKLSAIIDSGNEITRLPS 364
T + K + I+DSG P+
Sbjct: 202 GKTSMEKANVIVDSGTSTITAPT 224
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 93/269 (34%), Gaps = 77/269 (28%)
Query: 121 INNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTF- 179
+N+ A YY IG+ KQ + + DTGS W C + +D +KSKT+
Sbjct: 15 LNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYE 74
Query: 180 ---SKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEAN 236
+K+ N S + GF++ D +TI +
Sbjct: 75 KDGTKVEMNYVSGTV------------------------------SGFFSKDIVTIANLS 104
Query: 237 RDGYFSWYPFLLGCTNNNTSDQNGAS---------GIMGLDRSPISIIS----------- 276
Y F+ +D NG GI+GL +SI S
Sbjct: 105 FP-----YKFI------EVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQ 153
Query: 277 -QTNTSYFSYCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVG 335
+ + F++ LP GY+T G + +F + Y+ + +
Sbjct: 154 NKIEQAVFTFYLPFDDKHKGYLTIG---GIEDRFYEGQLTYEKLNHDLYWQVDL------ 204
Query: 336 GEKLPFNSTYITKLSAIIDSGNEITRLPS 364
L F + + K +AI+DSG P+
Sbjct: 205 --DLHFGNLTVEKATAIVDSGTSSITAPT 231
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSK 181
EY+ ++IG P Q +++ DTGS W C + + F PS+S T+S+
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQ 77
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 121 INNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHC------SQQRDPFFDPS 174
+ N +Y+ + +G P Q ++L DTGS W P I+C + QR FDP
Sbjct: 8 LTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWV---PSIYCKSNACKNHQR---FDPR 61
Query: 175 KSKTFSKI 182
KS TF +
Sbjct: 62 KSSTFQNL 69
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 121 INNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHC------SQQRDPFFDPS 174
+ N +Y+ + +G P Q ++L DTGS W P I+C + QR FDP
Sbjct: 8 LTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWV---PSIYCKSNACKNHQR---FDPR 61
Query: 175 KSKTFSKI 182
KS TF +
Sbjct: 62 KSSTFQNL 69
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQ---QRDPFFDPSKSKTFSKI 182
+Y+ + IG P Q +++ DTGS W P I+C + FDP KS TF +
Sbjct: 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWV---PSIYCKSNVCKNHHRFDPRKSSTFRNL 66
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 91/256 (35%), Gaps = 67/256 (26%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTF----SKIPC 184
+Y +G+ +Q + +LDTGS W C +D SKS+T+ +K+
Sbjct: 140 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEM 199
Query: 185 NSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSW- 243
N S + GF++ D +T+ G S
Sbjct: 200 NYVSGTV------------------------------SGFFSKDLVTV------GNLSLP 223
Query: 244 YPFLLGCTNNNTSDQNGAS---GIMGLDRSPISIIS------------QTNTSYFSYCLP 288
Y F+ N AS GI+GL +SI S + + F++ LP
Sbjct: 224 YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLP 283
Query: 289 SPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITK 348
TG++T G + +F + Y+ IT+ VG + + K
Sbjct: 284 VHDKHTGFLTIG---GIEERFYEGPLTYEKLNHDLYWQITLDA-HVG-------NIMLEK 332
Query: 349 LSAIIDSGNEITRLPS 364
+ I+DSG +P+
Sbjct: 333 ANCIVDSGTSAITVPT 348
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 91/256 (35%), Gaps = 67/256 (26%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTF----SKIPC 184
+Y +G+ +Q + +LDTGS W C +D SKS+T+ +K+
Sbjct: 67 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEM 126
Query: 185 NSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSW- 243
N S + GF++ D +T+ G S
Sbjct: 127 NYVSGTV------------------------------SGFFSKDLVTV------GNLSLP 150
Query: 244 YPFLLGCTNNNTSDQNGAS---GIMGLDRSPISIIS------------QTNTSYFSYCLP 288
Y F+ N AS GI+GL +SI S + + F++ LP
Sbjct: 151 YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLP 210
Query: 289 SPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITK 348
TG++T G + +F + Y+ IT+ VG + + K
Sbjct: 211 VHDKHTGFLTIG---GIEERFYEGPLTYEKLNHDLYWQITLDA-HVG-------NIMLEK 259
Query: 349 LSAIIDSGNEITRLPS 364
+ I+DSG +P+
Sbjct: 260 ANCIVDSGTSAITVPT 275
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 90/255 (35%), Gaps = 65/255 (25%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTF----SKIPC 184
+Y +G+ +Q + +LDTGS W C +D SKS+T+ +K+
Sbjct: 18 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEM 77
Query: 185 NSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWY 244
N S + GF++ D +T+ + Y
Sbjct: 78 NYVSGTV------------------------------SGFFSKDLVTVGNLSLP-----Y 102
Query: 245 PFLLGCTNNNTSDQNGAS---GIMGLDRSPISIIS------------QTNTSYFSYCLPS 289
F+ N AS GI+GL +SI S + + F++ LP
Sbjct: 103 KFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV 162
Query: 290 PYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKL 349
TG++T G + +F + Y+ IT+ VG + + K
Sbjct: 163 HDKHTGFLTIG---GIEERFYEGPLTYEKLNHDLYWQITLDA-HVG-------NIMLEKA 211
Query: 350 SAIIDSGNEITRLPS 364
+ I+DSG +P+
Sbjct: 212 NCIVDSGTSAITVPT 226
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 108
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 90/255 (35%), Gaps = 65/255 (25%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTF----SKIPC 184
+Y +G+ +Q + +LDTGS W C +D SKS+T+ +K+
Sbjct: 16 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEM 75
Query: 185 NSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWY 244
N S + GF++ D +T+ + Y
Sbjct: 76 NYVSGTV------------------------------SGFFSKDLVTVGNLSLP-----Y 100
Query: 245 PFLLGCTNNNTSDQNGAS---GIMGLDRSPISIIS------------QTNTSYFSYCLPS 289
F+ N AS GI+GL +SI S + + F++ LP
Sbjct: 101 KFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV 160
Query: 290 PYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKL 349
TG++T G + +F + Y+ IT+ VG + + K
Sbjct: 161 HDKHTGFLTIG---GIEERFYEGPLTYEKLNHDLYWQITLDA-HVG-------NIMLEKA 209
Query: 350 SAIIDSGNEITRLPS 364
+ I+DSG +P+
Sbjct: 210 NCIVDSGTSAITVPT 224
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W C + CS F+P S TF
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 108
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 89/255 (34%), Gaps = 65/255 (25%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTF----SKIPC 184
+Y +G+ +Q + +LDTGS W C +D SKS+T+ +K+
Sbjct: 18 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEM 77
Query: 185 NSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWY 244
N S + GF++ D +T+ + Y
Sbjct: 78 NYVSGTV------------------------------SGFFSKDLVTVGNLSLP-----Y 102
Query: 245 PFLLGCTNNNTSDQNGAS---GIMGLDRSPISIIS------------QTNTSYFSYCLPS 289
F+ N AS GI+GL +SI S + + F++ LP
Sbjct: 103 KFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV 162
Query: 290 PYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKL 349
TG++T G + +F + Y+ IT+ VG L K
Sbjct: 163 HDKHTGFLTIG---GIEERFYEGPLTYEKLNHDLYWQITLDA-HVGNISLE-------KA 211
Query: 350 SAIIDSGNEITRLPS 364
+ I+DSG +P+
Sbjct: 212 NCIVDSGTSAITVPT 226
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 89/255 (34%), Gaps = 65/255 (25%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTF----SKIPC 184
+Y +G+ +Q + +LDTGS W C +D SKS+T+ +K+
Sbjct: 16 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEM 75
Query: 185 NSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWY 244
N S + GF++ D +T+ + Y
Sbjct: 76 NYVSGTV------------------------------SGFFSKDLVTVGNLSLP-----Y 100
Query: 245 PFLLGCTNNNTSDQNGAS---GIMGLDRSPISIIS------------QTNTSYFSYCLPS 289
F+ N AS GI+GL +SI S + + F++ LP
Sbjct: 101 KFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV 160
Query: 290 PYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKL 349
TG++T G + +F + Y+ IT+ VG L K
Sbjct: 161 HDKHTGFLTIG---GIEERFYEGPLTYEKLNHDLYWQITLDA-HVGNISLE-------KA 209
Query: 350 SAIIDSGNEITRLPS 364
+ I+DSG +P+
Sbjct: 210 NCIVDSGTSAITVPT 224
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 87/246 (35%), Gaps = 59/246 (23%)
Query: 135 IGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRK 194
+G+ Q L+ DTGS W K C +D SKSK++ K
Sbjct: 70 VGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEK------------- 116
Query: 195 LLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNN 254
+ +I Y + GF++ D +T+ G+ S + T+ +
Sbjct: 117 ------------DGTKVDITYGSGTVK-GFFSKDLVTL------GHLSMPYKFIEVTDTD 157
Query: 255 TSDQNGAS----GIMGLDRSPISIIS------------QTNTSYFSYCLPSPYGSTGYIT 298
+ +S GI+GL +SI S + + + F++ LP GY+T
Sbjct: 158 DLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLT 217
Query: 299 FGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNE 358
G + KF + Y+ I + + F + K + I+DSG
Sbjct: 218 IG---GIEEKFYEGNITYEKLNHDLYWQIDL--------DVHFGKQTMEKANVIVDSGTT 266
Query: 359 ITRLPS 364
PS
Sbjct: 267 TITAPS 272
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 93/261 (35%), Gaps = 59/261 (22%)
Query: 120 KINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTF 179
++++ A +Y +G+ Q L+ DTGS W K C +D SKSK++
Sbjct: 9 ELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSY 68
Query: 180 SKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDG 239
K + +I Y + GF++ D +T+ G
Sbjct: 69 EK-------------------------DGTKVDITYGSGTVK-GFFSKDLVTL------G 96
Query: 240 YFSW-YPFLLGCTNNNTSDQNGA---SGIMGLDRSPISIIS------------QTNTSYF 283
+ S Y F+ ++ + GI+GL +SI S + + + F
Sbjct: 97 HLSMPYKFIEVIDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALF 156
Query: 284 SYCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNS 343
++ LP GY+T G + KF + Y+ I + + F
Sbjct: 157 TFYLPVHDVHAGYLTIG---GIEEKFYEGNITYEKLNHDLYWQIDL--------DVHFGK 205
Query: 344 TYITKLSAIIDSGNEITRLPS 364
+ K + I+DSG PS
Sbjct: 206 QTMEKANVIVDSGTTTITAPS 226
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 96/258 (37%), Gaps = 48/258 (18%)
Query: 125 AVDEYYIV-VAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIP 183
++D+ YI V IG P Q ++L DTGS W + PSKS T
Sbjct: 12 SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTT----- 66
Query: 184 CNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSW 243
+ L + Y D S GG + ++ A +
Sbjct: 67 --------AKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQ-AVESAKK------ 111
Query: 244 YPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF----SYCLPSP-------YG 292
+++ ++ + G++GL S ++ +S T F L SP Y
Sbjct: 112 -------VSSSFTEDSTIDGLLGLAFSTLNTVSPTQXKTFFDNAKASLDSPVFTADLGYH 164
Query: 293 STGYITFGRPDAVN-SKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSA 351
+ G FG D + I YT + T + +++ T TG +VG F ST I
Sbjct: 165 APGTYNFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGT--FKSTSI---DG 216
Query: 352 IIDSGNEITRLPSPIYAA 369
I D+G + LP+ + +A
Sbjct: 217 IADTGTTLLYLPATVVSA 234
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 96/258 (37%), Gaps = 48/258 (18%)
Query: 125 AVDEYYIV-VAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIP 183
++D+ YI V IG P Q ++L DTGS W + PSKS T
Sbjct: 12 SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTT----- 66
Query: 184 CNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSW 243
+ L + Y D S GG + ++ A +
Sbjct: 67 --------AKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQ-AVESAKK------ 111
Query: 244 YPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF----SYCLPSP-------YG 292
+++ ++ + G++GL S ++ +S T F L SP Y
Sbjct: 112 -------VSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYH 164
Query: 293 STGYITFGRPDAVN-SKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSA 351
+ G FG D + I YT + T + +++ T TG +VG F ST I
Sbjct: 165 APGTYNFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGT--FKSTSI---DG 216
Query: 352 IIDSGNEITRLPSPIYAA 369
I D+G + LP+ + +A
Sbjct: 217 IADTGTTLLYLPATVVSA 234
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQR-DPFFDPSKSKTFSK 181
Y+ + IG P Q +++ DTGS + W CI+ R ++ S S T+ +
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKE 68
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 117 FPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHC 163
P + N +YY + IG P Q +++ DTGS W P IHC
Sbjct: 3 IPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWV---PSIHC 46
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 131/371 (35%), Gaps = 83/371 (22%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQ---QRDPFFDPSKSKTFSKIPC 184
EY+ + IG P Q +++ DTGS W P ++CS F+P S T+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWV---PSVYCSSLACTNHNRFNPEDSSTYQS--- 66
Query: 185 NSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWY 244
S + I G I D GG ++I G F +Y
Sbjct: 67 TSETVSITYGTGSMTG------------ILGYDTVQVGGISDTNQIFGLSETEPGSFLYY 114
Query: 245 -PFLLGCTNNNTSDQNGASGIMGLDRSPIS---------------IISQTNTSYFSYCLP 288
PF GI+GL IS ++SQ FS L
Sbjct: 115 APF---------------DGILGLAYPSISSSGATPVFDNIWNQGLVSQ---DLFSVYLS 156
Query: 289 SPYGSTGYITFGRPD-AVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT 347
+ S + FG D + + + + P+ Y+ IT+ I++ GE +
Sbjct: 157 ADDQSGSVVIFGGIDSSYYTGSLNWVPVTV----EGYWQITVDSITMNGEAIACAE---- 208
Query: 348 KLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVP 407
AI+D+G + P+ A ++S A + D D SA + +P
Sbjct: 209 GCQAIVDTGTSLLTGPTSPIANIQS----------DIGASENSDGDMVVSCSAISS--LP 256
Query: 408 KITFHFLGGVDLELDVRGTLVVFSVSQVCLA---FAIFPSDPNSI-SLGNVQQRGYEVHY 463
I F G ++ V + + C++ P++ + LG+V R Y +
Sbjct: 257 DIVFTING---VQYPVPPSAYILQSEGSCISGFQGMNLPTESGELWILGDVFIRQYFTVF 313
Query: 464 DVAGRRLGFGP 474
D A ++G P
Sbjct: 314 DRANNQVGLAP 324
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQ---QRDPFFDPSKSKTF 179
EY+ + IG P Q +++ DTGS W P ++CS F+P S T+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWV---PSVYCSSLACTNHNRFNPEDSSTY 64
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 92 FHSENS-RRLQKAIPD----NYLQKS---------KSFQFPAKINNTAVDEYYIVVAIGE 137
F+ ENS RL K I + NY+++S K ++ +N + + V++ GE
Sbjct: 83 FNIENSYDRLMKTIKEHKLKNYIKESVKLFNKGLTKKSYLGSEFDNVELKDLANVLSFGE 142
Query: 138 PK-----QYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSK 181
K Q + L T S W C S + +D SKSKT+ K
Sbjct: 143 AKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEK 191
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 98/258 (37%), Gaps = 49/258 (18%)
Query: 125 AVDEYYIV-VAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIP 183
++D+ YI V IG P Q ++L DTGS W S+ + PSKS T
Sbjct: 12 SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSET-TASEVXQTIYTPSKSTT----- 65
Query: 184 CNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSW 243
+ L + Y D S GG + ++ A +
Sbjct: 66 --------AKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQ-AVESAKK------ 110
Query: 244 YPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF----SYCLPSP-------YG 292
+++ ++ + G++GL S ++ +S T F L SP Y
Sbjct: 111 -------VSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYH 163
Query: 293 STGYITFGRPDAVN-SKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSA 351
+ G FG D + I YT + T + +++ T TG +VG F ST I
Sbjct: 164 APGTYNFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGT--FKSTSI---DG 215
Query: 352 IIDSGNEITRLPSPIYAA 369
I D+G + LP+ + +A
Sbjct: 216 IADTGTTLLYLPATVVSA 233
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 98/258 (37%), Gaps = 49/258 (18%)
Query: 125 AVDEYYIV-VAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIP 183
++D+ YI V IG P Q ++L DTGS W S+ + PSKS T
Sbjct: 12 SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSET-TASEVXQTIYTPSKSTT----- 65
Query: 184 CNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSW 243
+ L + Y D S GG + ++ A +
Sbjct: 66 --------AKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQ-AVESAKK------ 110
Query: 244 YPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYF----SYCLPSP-------YG 292
+++ ++ + G++GL S ++ +S T F L SP Y
Sbjct: 111 -------VSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYH 163
Query: 293 STGYITFGRPDAVN-SKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSA 351
+ G FG D + I YT + T + +++ T TG +VG F ST I
Sbjct: 164 APGTYNFGFIDTTAYTGSITYTAVST---KQGFWEWTSTGYAVGSGT--FKSTSI---DG 215
Query: 352 IIDSGNEITRLPSPIYAA 369
I D+G + LP+ + +A
Sbjct: 216 IADTGTTLLYLPATVVSA 233
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 105/271 (38%), Gaps = 66/271 (24%)
Query: 129 YYIVVAIGEPKQYVSLLLDTGSDLTW---TQCKPCIHCSQQRDPFFDPSKSKTFSKIPCN 185
Y + +G +Q ++++DTGS W T + + S Q + F + TF P +
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNF--CKQEGTFD--PSS 69
Query: 186 SASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYP 245
S+S + L + ++I Y D +S G + D + G S
Sbjct: 70 SSSAQNLNQ---------------DFSIEYGDLTSSQGSFYKDTVGF------GGISIKN 108
Query: 246 FLLGCTNNNTSDQNGASGIMGL------------DRSPISIISQ--TNTSYFSYCLPSPY 291
+ DQ GIMG+ D P+++ Q N + +S L S
Sbjct: 109 QQFADVTTTSVDQ----GIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSED 164
Query: 292 GSTGYITFGRPDAVNSKF---IKYTPIITTPEQSEYY-DITITGISV----------GGE 337
STG I FG D N+K+ + P+ ++ E + I G SV G
Sbjct: 165 ASTGKIIFGGVD--NAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSGTT 222
Query: 338 KLPFNSTYITKLSAII----DSGNEITRLPS 364
F+ + K + I+ DS NEI RLPS
Sbjct: 223 ITYFSQSTADKFARIVGATWDSRNEIYRLPS 253
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 121 INNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKT 178
+ N +YY + IG P Q ++ DTGS W C ++ + FD S S +
Sbjct: 12 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSS 71
Query: 179 F 179
+
Sbjct: 72 Y 72
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 121 INNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKT 178
+ N +YY + IG P Q ++ DTGS W C ++ + FD S S +
Sbjct: 12 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSS 71
Query: 179 F 179
+
Sbjct: 72 Y 72
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 121 INNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKT 178
+ N +YY + IG P Q ++ DTGS W C ++ + FD S S +
Sbjct: 8 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSS 67
Query: 179 F 179
+
Sbjct: 68 Y 68
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 121 INNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKT 178
+ N +YY + IG P Q ++ DTGS W C ++ + FD S S +
Sbjct: 5 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSS 64
Query: 179 F 179
+
Sbjct: 65 Y 65
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 121 INNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKT 178
+ N +YY + IG P Q ++ DTGS W C ++ + FD S S +
Sbjct: 12 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSS 71
Query: 179 F 179
+
Sbjct: 72 Y 72
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 121 INNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKT 178
+ N +YY + IG P Q ++ DTGS W C ++ + FD S S +
Sbjct: 9 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSS 68
Query: 179 F 179
+
Sbjct: 69 Y 69
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 121 INNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKT 178
+ N +YY + IG P Q ++ DTGS W C ++ + FD S S +
Sbjct: 55 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSS 114
Query: 179 F 179
+
Sbjct: 115 Y 115
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC--IHCSQQRDPFFDPSKSKTF 179
+YY + IG P Q ++ DTGS W C ++ + FD S S ++
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 118 PAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC 160
P + N +YY + IG P Q ++ DTGS W C
Sbjct: 6 PVVLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKC 48
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC 160
+YY + +G P Q ++LDTGS W C
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC 46
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC 160
+YY + +G P Q ++LDTGS W C
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC 46
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC 160
+YY + +G P Q ++LDTGS W C
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC 46
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 119 AKINNTAVDEYYIVVAIGEPK-----QYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDP 173
++ +N + + V++ GE K Q + L T S W C S + +D
Sbjct: 5 SEFDNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDS 64
Query: 174 SKSKTFSK 181
SKSKT+ K
Sbjct: 65 SKSKTYEK 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,296,661
Number of Sequences: 62578
Number of extensions: 657017
Number of successful extensions: 1435
Number of sequences better than 100.0: 146
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1272
Number of HSP's gapped (non-prelim): 203
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)