Query 011746
Match_columns 478
No_of_seqs 337 out of 1756
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:47:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 8.4E-75 1.8E-79 604.1 40.9 390 58-478 23-429 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 2.5E-59 5.4E-64 484.7 36.7 334 125-478 43-397 (398)
3 cd05472 cnd41_like Chloroplast 100.0 8E-58 1.7E-62 456.5 32.2 294 128-477 1-299 (299)
4 cd05489 xylanase_inhibitor_I_l 100.0 1.5E-57 3.3E-62 464.6 31.5 324 135-475 2-361 (362)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.5E-54 3.2E-59 438.1 30.8 298 127-478 2-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 5.6E-54 1.2E-58 432.3 29.4 294 125-474 7-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 3.8E-53 8.2E-58 427.7 30.2 295 125-474 3-325 (325)
8 PTZ00165 aspartyl protease; Pr 100.0 2.2E-52 4.7E-57 438.4 33.8 299 124-478 116-449 (482)
9 cd05477 gastricsin Gastricsins 100.0 1.4E-52 3E-57 422.4 30.6 294 126-475 1-318 (318)
10 cd05486 Cathespin_E Cathepsin 100.0 9.4E-53 2E-57 423.2 28.0 290 129-474 1-316 (316)
11 cd05488 Proteinase_A_fungi Fun 100.0 6.1E-52 1.3E-56 418.0 29.6 292 125-474 7-320 (320)
12 cd05473 beta_secretase_like Be 100.0 1.2E-51 2.6E-56 423.1 30.2 312 127-478 2-348 (364)
13 cd05485 Cathepsin_D_like Cathe 100.0 3.7E-51 8E-56 413.8 29.8 294 125-474 8-329 (329)
14 cd06098 phytepsin Phytepsin, a 100.0 8.4E-51 1.8E-55 409.2 30.7 284 125-474 7-317 (317)
15 cd05487 renin_like Renin stimu 100.0 6.9E-51 1.5E-55 411.4 29.8 294 125-475 5-326 (326)
16 cd05475 nucellin_like Nucellin 100.0 2.8E-50 6E-55 397.1 28.6 258 127-477 1-273 (273)
17 PTZ00147 plasmepsin-1; Provisi 100.0 4.6E-50 1E-54 417.8 31.1 301 114-476 127-450 (453)
18 cd05476 pepsin_A_like_plant Ch 100.0 2.2E-49 4.7E-54 389.1 28.6 254 128-477 1-265 (265)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.6E-49 1.2E-53 409.0 31.1 300 115-476 127-449 (450)
20 cd06097 Aspergillopepsin_like 100.0 7.5E-48 1.6E-52 380.7 25.9 261 129-474 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 3.7E-46 7.9E-51 371.4 26.4 269 128-475 2-295 (295)
22 cd05471 pepsin_like Pepsin-lik 100.0 2.9E-44 6.3E-49 354.4 27.0 264 129-474 1-283 (283)
23 PF00026 Asp: Eukaryotic aspar 100.0 3.4E-45 7.3E-50 367.3 19.5 294 128-475 1-317 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 8.5E-33 1.9E-37 251.7 14.6 160 129-301 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 2.1E-28 4.6E-33 222.4 16.3 149 324-474 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1E-22 2.2E-27 172.5 11.4 105 131-267 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.7 0.0001 2.2E-09 59.9 6.8 94 127-269 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.8 0.076 1.6E-06 45.7 9.4 96 125-269 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 94.5 0.23 4.9E-06 39.4 8.0 89 131-268 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 93.9 0.74 1.6E-05 39.6 10.4 25 448-472 100-124 (124)
31 TIGR02281 clan_AA_DTGA clan AA 92.1 3.1 6.7E-05 35.6 11.6 36 322-370 9-44 (121)
32 TIGR03698 clan_AA_DTGF clan AA 90.8 1.6 3.5E-05 36.5 8.3 23 448-470 85-107 (107)
33 cd05484 retropepsin_like_LTR_2 90.4 0.31 6.7E-06 39.3 3.5 29 129-159 1-29 (91)
34 cd05479 RP_DDI RP_DDI; retrope 88.2 3.1 6.7E-05 35.7 8.3 32 125-158 13-44 (124)
35 PF08284 RVP_2: Retroviral asp 84.8 3.2 7E-05 36.3 6.7 28 448-475 105-132 (135)
36 PF13975 gag-asp_proteas: gag- 84.7 1.6 3.4E-05 33.7 4.2 34 125-160 5-38 (72)
37 PF00077 RVP: Retroviral aspar 81.4 2.1 4.5E-05 34.9 3.9 28 130-159 7-34 (100)
38 PF13650 Asp_protease_2: Aspar 81.3 2 4.4E-05 33.8 3.8 29 332-370 3-31 (90)
39 PF12384 Peptidase_A2B: Ty3 tr 78.9 35 0.00076 30.9 10.8 54 307-370 14-67 (177)
40 cd05484 retropepsin_like_LTR_2 77.2 3.7 8E-05 32.9 4.1 30 331-370 4-33 (91)
41 COG3577 Predicted aspartyl pro 76.5 14 0.00031 34.5 8.0 78 116-234 95-172 (215)
42 PF11925 DUF3443: Protein of u 75.4 31 0.00068 35.2 10.8 54 214-271 83-150 (370)
43 PF13975 gag-asp_proteas: gag- 74.3 5.8 0.00013 30.5 4.3 29 332-370 13-41 (72)
44 cd05483 retropepsin_like_bacte 72.2 7.5 0.00016 30.8 4.8 29 332-370 7-35 (96)
45 cd05482 HIV_retropepsin_like R 70.1 5.7 0.00012 32.0 3.4 25 132-158 2-26 (87)
46 cd06095 RP_RTVL_H_like Retrope 67.1 6.5 0.00014 31.2 3.3 26 132-159 2-27 (86)
47 cd06095 RP_RTVL_H_like Retrope 66.3 8.7 0.00019 30.5 3.9 29 332-370 3-31 (86)
48 COG5550 Predicted aspartyl pro 63.1 24 0.00052 30.3 6.0 20 351-370 29-49 (125)
49 PF00077 RVP: Retroviral aspar 59.4 8.2 0.00018 31.3 2.6 27 331-367 9-35 (100)
50 cd05481 retropepsin_like_LTR_1 48.7 23 0.0005 28.7 3.5 21 351-371 13-33 (93)
51 COG3577 Predicted aspartyl pro 47.9 51 0.0011 30.9 6.0 36 322-370 103-138 (215)
52 PF07438 DUF1514: Protein of u 47.6 14 0.0003 27.7 1.8 22 1-22 1-22 (66)
53 PF09668 Asp_protease: Asparty 41.7 33 0.00073 29.5 3.6 29 332-370 29-57 (124)
54 PF12384 Peptidase_A2B: Ty3 tr 39.0 39 0.00084 30.6 3.6 29 130-158 34-62 (177)
55 KOG0012 DNA damage inducible p 30.2 3.7E+02 0.008 27.6 9.2 103 330-475 238-346 (380)
56 PF09668 Asp_protease: Asparty 27.3 1E+02 0.0022 26.6 4.2 31 125-157 21-51 (124)
57 PF10829 DUF2554: Protein of u 23.0 89 0.0019 24.0 2.7 32 4-35 1-32 (76)
58 PF08139 LPAM_1: Prokaryotic m 21.4 96 0.0021 18.9 2.1 17 3-19 5-21 (25)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=8.4e-75 Score=604.12 Aligned_cols=390 Identities=32% Similarity=0.569 Sum_probs=323.2
Q ss_pred CceEEEEEcCcCCCCCCCCC----CCCchhhHHhhhhhhhhhhhhhhhccCCCccccCCcceeeeeeecCC-CCeeEEEE
Q 011746 58 GKASLEVVSKYGPCSRLNKG----MSTHTPPLRKGRQRFHSENSRRLQKAIPDNYLQKSKSFQFPAKINNT-AVDEYYIV 132 (478)
Q Consensus 58 ~~~~~~l~h~~~~~sp~~~~----~~~~~~~l~~d~~R~~~l~~~r~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~Y~~~ 132 (478)
.+++++|+||++||+|.... .+.++++++|+++|++++.+ +... ..|+..+.. ++++|+++
T Consensus 23 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~-------------~~~~~~~~~~~~~~Y~v~ 88 (431)
T PLN03146 23 GGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRP-TDAS-------------PNDPQSDLISNGGEYLMN 88 (431)
T ss_pred CceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhh-cccc-------------CCccccCcccCCccEEEE
Confidence 57999999999999997533 35677888889999887765 3211 123333333 78999999
Q ss_pred EEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCC-CCCCCc
Q 011746 133 VAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCS-SEECPY 211 (478)
Q Consensus 133 v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~-~~~c~~ 211 (478)
|+||||+|++.|++||||+++||||.+|..|+.|.++.|||++|+||+.++|+++.|+.+.. ...|. ++.|.|
T Consensus 89 i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~------~~~c~~~~~c~y 162 (431)
T PLN03146 89 ISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN------QASCSDENTCTY 162 (431)
T ss_pred EEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC------CCCCCCCCCCee
Confidence 99999999999999999999999999999999988899999999999999999999987762 23465 456999
Q ss_pred eeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC-CCcceEEecCCCCCcccccccccc---ceEec
Q 011746 212 NIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ-NGASGIMGLDRSPISIISQTNTSY---FSYCL 287 (478)
Q Consensus 212 ~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~~---FS~cL 287 (478)
.+.|+||+.+.|++++|+|+|++.. .....++++.|||++.+.+.| ...+||||||++++|+++|+.... |||||
T Consensus 163 ~i~Ygdgs~~~G~l~~Dtltlg~~~-~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL 241 (431)
T PLN03146 163 SYSYGDGSFTKGNLAVETLTIGSTS-GRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCL 241 (431)
T ss_pred EEEeCCCCceeeEEEEEEEEeccCC-CCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEEC
Confidence 9999999888999999999995432 233458999999999988877 468999999999999999987543 99999
Q ss_pred cCCC---CCccEEEeCCCCCcCC-CCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCccccc---CCceEEeccCcee
Q 011746 288 PSPY---GSTGYITFGRPDAVNS-KFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT---KLSAIIDSGNEIT 360 (478)
Q Consensus 288 ~~~~---~~~G~L~fG~~d~~~~-~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~---~~~~iiDSGT~~t 360 (478)
++.. ...|.|+||+.. ++. ..+.||||+.+.. +.+|+|+|++|+||++++++++..|. .+++||||||++|
T Consensus 242 ~~~~~~~~~~g~l~fG~~~-~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t 319 (431)
T PLN03146 242 VPLSSDSNGTSKINFGTNA-IVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLT 319 (431)
T ss_pred CCCCCCCCCcceEEeCCcc-ccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccce
Confidence 7632 247999999854 333 4589999986532 67999999999999999988877652 3679999999999
Q ss_pred ecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceEEEeCCCeEEEEEE
Q 011746 361 RLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFA 440 (478)
Q Consensus 361 ~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~ 440 (478)
+||+++|++|+++|.+++...+.... ...+++||+... ...+|+|+|+|+ |++++|++++|++....+.+|+++.
T Consensus 320 ~Lp~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~C~~~~~--~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~ 394 (431)
T PLN03146 320 LLPSDFYSELESAVEEAIGGERVSDP--QGLLSLCYSSTS--DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMI 394 (431)
T ss_pred ecCHHHHHHHHHHHHHHhccccCCCC--CCCCCccccCCC--CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEe
Confidence 99999999999999999864333333 345778998543 257999999996 5999999999999887678899988
Q ss_pred ecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 441 IFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 441 ~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
+.. +.+|||+.|||++||+||++++|||||+.+|+
T Consensus 395 ~~~---~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 395 PTS---SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred cCC---CceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 653 26999999999999999999999999999995
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-59 Score=484.71 Aligned_cols=334 Identities=39% Similarity=0.695 Sum_probs=285.3
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC-CCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI-HCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDN 203 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~-~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~ 203 (478)
.+++|+++|.||||+|+|.|++||||+++||+|.+|. .|+.+.++.|||++|+||+.+.|+++.|..+.. ..
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~-------~~ 115 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ-------SC 115 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCcccccccc-------Cc
Confidence 6789999999999999999999999999999999999 799876677999999999999999999998873 23
Q ss_pred CCCCCCCceeecCCCCceeeEEEEEEEEEccC--CCCCceeccceeeeeeecCCCCC---CCcceEEecCCCCCcccccc
Q 011746 204 CSSEECPYNIAYADNSSDGGFWAADRITIQEA--NRDGYFSWYPFLLGCTNNNTSDQ---NGASGIMGLDRSPISIISQT 278 (478)
Q Consensus 204 C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~--~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl~sQl 278 (478)
|.++.|.|.+.|+||+.++|++++|+|+|++. .. ++++.|||++.+.+.+ ..++||||||++++|+.+|+
T Consensus 116 ~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~-----~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~ 190 (398)
T KOG1339|consen 116 SPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLP-----VPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQL 190 (398)
T ss_pred ccCCcCceEEEeCCCCceeEEEEEEEEEEccccccc-----cccEEEEeeecCccccccccccceEeecCCCCccceeec
Confidence 33788999999999889999999999999653 34 7889999999997632 46899999999999999999
Q ss_pred cccc-----ceEeccCCCC---CccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCccccc--
Q 011746 279 NTSY-----FSYCLPSPYG---STGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT-- 347 (478)
Q Consensus 279 ~~~~-----FS~cL~~~~~---~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~-- 347 (478)
.... |||||.+... ..|.|+||+.|. .+.+.+.|+||+.++. .+|.|++.+|+||++. ++++..+.
T Consensus 191 ~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~~ 267 (398)
T KOG1339|consen 191 PSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCTD 267 (398)
T ss_pred ccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEecC
Confidence 8876 9999998743 479999999998 7888999999999653 6999999999999987 66666665
Q ss_pred CCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceE
Q 011746 348 KLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTL 427 (478)
Q Consensus 348 ~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 427 (478)
.+++|+||||++++||+++|++|.++|.+.+. ..... ...+..||...... ..+|.|+|+|.+|+.+.|++++|+
T Consensus 268 ~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~~~~~---~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~ 342 (398)
T KOG1339|consen 268 GGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-VVGTD---GEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYL 342 (398)
T ss_pred CCCEEEECCcceeeccHHHHHHHHHHHHhhee-ccccC---CceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceE
Confidence 27899999999999999999999999998741 11111 22344699776544 569999999986899999999999
Q ss_pred EEeCCCeE-EEEEEecCCCCCeeeechhhhcceEEEEeCC-CCEEEEee--CCCC
Q 011746 428 VVFSVSQV-CLAFAIFPSDPNSISLGNVQQRGYEVHYDVA-GRRLGFGP--GNCS 478 (478)
Q Consensus 428 ~~~~~~~~-Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~-~~rIGFa~--~~C~ 478 (478)
++...... |+++.........||||+.|||+++++||.. ++|||||+ ..|+
T Consensus 343 ~~~~~~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 343 VEVSDGGGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEECCCCCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 99864444 9987765443358999999999999999999 99999999 7885
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=8e-58 Score=456.53 Aligned_cols=294 Identities=45% Similarity=0.833 Sum_probs=253.1
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCCC
Q 011746 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSE 207 (478)
Q Consensus 128 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~ 207 (478)
+|+++|.||||+|++.|+|||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999998765
Q ss_pred CCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCCCCcceEEecCCCCCcccccccccc---ce
Q 011746 208 ECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSY---FS 284 (478)
Q Consensus 208 ~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~---FS 284 (478)
|.|.+.|+||+.++|++++|+|+|++... ++++.|||+....+.+...+||||||+...|+++|+..+. ||
T Consensus 34 -~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~-----~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS 107 (299)
T cd05472 34 -CLYQVSYGDGSYTTGDLATDTLTLGSSDV-----VPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFS 107 (299)
T ss_pred -CeeeeEeCCCceEEEEEEEEEEEeCCCCc-----cCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceE
Confidence 46899999998789999999999954325 8999999999888777789999999999999999987642 99
Q ss_pred EeccCCC-CCccEEEeCCCCCcCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecC
Q 011746 285 YCLPSPY-GSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLP 363 (478)
Q Consensus 285 ~cL~~~~-~~~G~L~fG~~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp 363 (478)
+||++.. ...|+|+||++|+. .+++.|+|++.++..+.+|.|+|++|+||++.+.+++.....+++||||||++++||
T Consensus 108 ~~L~~~~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp 186 (299)
T cd05472 108 YCLPDRSSSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLP 186 (299)
T ss_pred EEccCCCCCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecC
Confidence 9998754 45899999999865 789999999987655679999999999999998765433334679999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceEEEe-CCCeEEEEEEec
Q 011746 364 SPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVF-SVSQVCLAFAIF 442 (478)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~-~~~~~Cl~~~~~ 442 (478)
+++|++|.+++.+.+...+...+ ...++.||+.++.....+|+|+|+|.|+++++|++++|++.. ..+..|+++...
T Consensus 187 ~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~ 264 (299)
T cd05472 187 PSAYAALRDAFRAAMAAYPRAPG--FSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGT 264 (299)
T ss_pred HHHHHHHHHHHHHHhccCCCCCC--CCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCC
Confidence 99999999999988754444444 556767998887666789999999986799999999999953 356789988876
Q ss_pred CCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCC
Q 011746 443 PSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNC 477 (478)
Q Consensus 443 ~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C 477 (478)
+...+.+|||+.|||++|+|||++++|||||+.+|
T Consensus 265 ~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 265 SDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 43345799999999999999999999999999999
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.5e-57 Score=464.61 Aligned_cols=324 Identities=27% Similarity=0.460 Sum_probs=263.0
Q ss_pred eCCCCcE-EEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCC-------CCCCCCC
Q 011746 135 IGEPKQY-VSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPN-------GQDNCSS 206 (478)
Q Consensus 135 iGtP~q~-~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~-------~~~~C~~ 206 (478)
+|||-.+ +.|+|||||+++||||.+| +|+||+.++|+++.|+.+.. ++. ....|.+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~--------------~sst~~~~~C~s~~C~~~~~--~~~~~~~~~~~~~~c~~ 65 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG--------------HSSTYQTVPCSSSVCSLANR--YHCPGTCGGAPGPGCGN 65 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC--------------CcCCCCccCcCChhhccccc--cCCCccccCCCCCCCCC
Confidence 5788777 9999999999999999863 58899999999999987652 110 1236777
Q ss_pred CCCCceee-cCCCCceeeEEEEEEEEEccCCCCC--ceeccceeeeeeecCC--CCCCCcceEEecCCCCCccccccccc
Q 011746 207 EECPYNIA-YADNSSDGGFWAADRITIQEANRDG--YFSWYPFLLGCTNNNT--SDQNGASGIMGLDRSPISIISQTNTS 281 (478)
Q Consensus 207 ~~c~~~~~-Ygdgs~~~G~~~~Dtltl~~~~~~~--~~~~~~~~FGc~~~~~--g~~~~~~GilGLg~~~~Sl~sQl~~~ 281 (478)
+.|.|... |++|+.+.|++++|+|+|+....+. ...++++.|||++++. +.+..+|||||||++++|+++|+..+
T Consensus 66 ~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~ 145 (362)
T cd05489 66 NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASA 145 (362)
T ss_pred CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhh
Confidence 77999766 8899999999999999995322111 1348899999999864 34456899999999999999998764
Q ss_pred c-----ceEeccCCCCCccEEEeCCCCC-cC------CCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCccccc--
Q 011746 282 Y-----FSYCLPSPYGSTGYITFGRPDA-VN------SKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT-- 347 (478)
Q Consensus 282 ~-----FS~cL~~~~~~~G~L~fG~~d~-~~------~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~-- 347 (478)
. |||||++..+..|.|+||+.+. .+ .+++.||||+.++..+.+|+|+|++|+||++++++++..+.
T Consensus 146 ~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~ 225 (362)
T cd05489 146 FGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAND 225 (362)
T ss_pred cCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccc
Confidence 2 9999997655689999999875 33 37899999998765568999999999999999988765442
Q ss_pred ---CCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCC----cccccCeEEEEEcC-CcEE
Q 011746 348 ---KLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAY----ETVVVPKITFHFLG-GVDL 419 (478)
Q Consensus 348 ---~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~----~~~~~P~i~~~f~g-g~~~ 419 (478)
.+++||||||++|+||+++|++|+++|.++++..+..... ...+|.||+.... ....+|+|+|+|+| |+++
T Consensus 226 ~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~ 304 (362)
T cd05489 226 RLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAA-AVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNW 304 (362)
T ss_pred ccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCC-CCCcCccccCCCcCCcccccccceEEEEEeCCCeEE
Confidence 3689999999999999999999999999988654433220 1223789986532 14689999999987 8999
Q ss_pred EecCCceEEEeCCCeEEEEEEecCCC-CCeeeechhhhcceEEEEeCCCCEEEEeeC
Q 011746 420 ELDVRGTLVVFSVSQVCLAFAIFPSD-PNSISLGNVQQRGYEVHYDVAGRRLGFGPG 475 (478)
Q Consensus 420 ~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 475 (478)
+|++++|+++...+.+|++|...+.. .+.||||+.|||++|++||++++|||||+.
T Consensus 305 ~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 305 TIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999998767899999876532 347999999999999999999999999974
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.5e-54 Score=438.11 Aligned_cols=298 Identities=27% Similarity=0.471 Sum_probs=245.1
Q ss_pred eeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCC
Q 011746 127 DEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSS 206 (478)
Q Consensus 127 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 206 (478)
+.|+++|+||||+|++.|+|||||+++||+|.+|..|..+..+.|||++|+|++.++|++..|.. ...|.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~---------~~~~~~ 72 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY---------CLSCLN 72 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc---------cCcCCC
Confidence 68999999999999999999999999999999999998877789999999999999999999953 225777
Q ss_pred CCCCceeecCCCCceeeEEEEEEEEEccCCCCC-ceeccceeeeeeecCCCCC--CCcceEEecCCCCCc-c-------c
Q 011746 207 EECPYNIAYADNSSDGGFWAADRITIQEANRDG-YFSWYPFLLGCTNNNTSDQ--NGASGIMGLDRSPIS-I-------I 275 (478)
Q Consensus 207 ~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~-~~~~~~~~FGc~~~~~g~~--~~~~GilGLg~~~~S-l-------~ 275 (478)
+.|.|.+.|+||+.+.|.+++|+|+|++..... .....++.|||+....+.| ...+||||||+...+ + .
T Consensus 73 ~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~ 152 (326)
T cd06096 73 NKCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLF 152 (326)
T ss_pred CcCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHH
Confidence 789999999999889999999999995432100 0111357899999887765 568999999998753 1 1
Q ss_pred cccc-c---ccceEeccCCCCCccEEEeCCCCC-cCC----------CCceEeeceeCCCCCccEEEEEeEEEECCeEee
Q 011746 276 SQTN-T---SYFSYCLPSPYGSTGYITFGRPDA-VNS----------KFIKYTPIITTPEQSEYYDITITGISVGGEKLP 340 (478)
Q Consensus 276 sQl~-~---~~FS~cL~~~~~~~G~L~fG~~d~-~~~----------~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~ 340 (478)
.|.. . ..||+||++. .|.|+||++|+ ++. +++.|+|+.. +.+|.|++++|+|+++...
T Consensus 153 ~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~ 225 (326)
T cd06096 153 TKRPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSN 225 (326)
T ss_pred HhcccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEcccccc
Confidence 2222 2 2299999863 69999999997 555 7899999986 5789999999999998611
Q ss_pred -eCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEE
Q 011746 341 -FNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDL 419 (478)
Q Consensus 341 -i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~ 419 (478)
.... ...+||||||++++||+++|++|.+++ |+|+|+|++|+++
T Consensus 226 ~~~~~---~~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------------P~i~~~f~~g~~~ 270 (326)
T cd06096 226 SGNTK---GLGMLVDSGSTLSHFPEDLYNKINNFF--------------------------------PTITIIFENNLKI 270 (326)
T ss_pred eeccc---CCCEEEeCCCCcccCCHHHHHHHHhhc--------------------------------CcEEEEEcCCcEE
Confidence 1111 256999999999999999999987654 7899999767999
Q ss_pred EecCCceEEEeCCCeEEEEEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 420 ELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 420 ~l~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
+++|++|++.......|+++.... +.+|||++|||++|+|||.+++|||||+++|.
T Consensus 271 ~i~p~~y~~~~~~~~c~~~~~~~~---~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 271 DWKPSSYLYKKESFWCKGGEKSVS---NKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EECHHHhccccCCceEEEEEecCC---CceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999999999875444455665432 37999999999999999999999999999995
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=5.6e-54 Score=432.31 Aligned_cols=294 Identities=22% Similarity=0.379 Sum_probs=244.7
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNC 204 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 204 (478)
.+..|+++|.||||+|++.|+|||||+++||+|..|..|..+.++.|||++|+|++.. +
T Consensus 7 ~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~--------------------~- 65 (317)
T cd05478 7 LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQST--------------------G- 65 (317)
T ss_pred cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeC--------------------C-
Confidence 5799999999999999999999999999999999998633334589999999999876 3
Q ss_pred CCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC---CCcceEEecCCCCCc------cc
Q 011746 205 SSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ---NGASGIMGLDRSPIS------II 275 (478)
Q Consensus 205 ~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S------l~ 275 (478)
|.|.+.|++|+ +.|.+++|+|+|+ +.. ++++.|||++...+.+ ...+||||||+...+ ++
T Consensus 66 ----~~~~~~yg~gs-~~G~~~~D~v~ig-~~~-----i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~ 134 (317)
T cd05478 66 ----QPLSIQYGTGS-MTGILGYDTVQVG-GIS-----DTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVF 134 (317)
T ss_pred ----cEEEEEECCce-EEEEEeeeEEEEC-CEE-----ECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHH
Confidence 68999999995 7999999999994 445 8999999998876654 357999999987543 55
Q ss_pred ccccccc------ceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccC
Q 011746 276 SQTNTSY------FSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITK 348 (478)
Q Consensus 276 sQl~~~~------FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~ 348 (478)
.|+..+. ||+||.+.....|.|+|||+|+ ++.+++.|+|+.. +.+|.|++++|+|||+.+.....
T Consensus 135 ~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~~---- 206 (317)
T cd05478 135 DNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACSGG---- 206 (317)
T ss_pred HHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccCCC----
Confidence 5554432 9999998755679999999998 8899999999976 68999999999999998864332
Q ss_pred CceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceEE
Q 011746 349 LSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLV 428 (478)
Q Consensus 349 ~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~ 428 (478)
..+||||||++++||+++|++|.+++.+.. . ..+ +|.++|.....+|.|+|+| +|++++|++++|++
T Consensus 207 ~~~iiDTGts~~~lp~~~~~~l~~~~~~~~---~-~~~--------~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y~~ 273 (317)
T cd05478 207 CQAIVDTGTSLLVGPSSDIANIQSDIGASQ---N-QNG--------EMVVNCSSISSMPDVVFTI-NGVQYPLPPSAYIL 273 (317)
T ss_pred CEEEECCCchhhhCCHHHHHHHHHHhCCcc---c-cCC--------cEEeCCcCcccCCcEEEEE-CCEEEEECHHHhee
Confidence 469999999999999999999998886531 1 122 3444444556799999999 55999999999998
Q ss_pred EeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEee
Q 011746 429 VFSVSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGP 474 (478)
Q Consensus 429 ~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 474 (478)
.. ...|+ +|...+. .+.||||++|||++|+|||++++|||||+
T Consensus 274 ~~--~~~C~~~~~~~~~-~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 274 QD--QGSCTSGFQSMGL-GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred cC--CCEEeEEEEeCCC-CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 76 67898 5766533 35799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.8e-53 Score=427.72 Aligned_cols=295 Identities=24% Similarity=0.373 Sum_probs=238.8
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC----CCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI----HCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNG 200 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 200 (478)
.+.+|+++|.||||+|++.|+|||||+++||+|..|. .|..+ +.|||++|+||+..
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~--~~y~~~~SsT~~~~------------------ 62 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLH--HKYNSSKSSTYVKN------------------ 62 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCc--CcCCcccCcceeeC------------------
Confidence 5789999999999999999999999999999999997 36644 69999999999764
Q ss_pred CCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCCCCCccc--
Q 011746 201 QDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRSPISII-- 275 (478)
Q Consensus 201 ~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl~-- 275 (478)
+ |.|.+.|++| .+.|.+++|+|+|+ +.. ++++.|||++...+. | ...+||||||++..|..
T Consensus 63 --~-----~~~~i~Yg~G-~~~G~~~~D~v~~g-~~~-----~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 128 (325)
T cd05490 63 --G-----TEFAIQYGSG-SLSGYLSQDTVSIG-GLQ-----VEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGV 128 (325)
T ss_pred --C-----cEEEEEECCc-EEEEEEeeeEEEEC-CEE-----EcCEEEEEEeeccCCcccceeeeEEEecCCccccccCC
Confidence 3 7899999999 58999999999994 445 899999999887652 3 46799999999876533
Q ss_pred ----ccccccc------ceEeccCCC--CCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeC
Q 011746 276 ----SQTNTSY------FSYCLPSPY--GSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFN 342 (478)
Q Consensus 276 ----sQl~~~~------FS~cL~~~~--~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~ 342 (478)
.++..+. ||+||.+.. ...|.|+||++|+ ++.+++.|+|+.. ..+|.|++++|+||++.....
T Consensus 129 ~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~ 204 (325)
T cd05490 129 TPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCK 204 (325)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecC
Confidence 3443322 999998643 2379999999998 8889999999975 679999999999998753322
Q ss_pred cccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEec
Q 011746 343 STYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELD 422 (478)
Q Consensus 343 ~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~ 422 (478)
. ...+||||||+++++|++++++|.+++.+. +...+ .+.+ +|. ....+|+|+|+| ||++++|+
T Consensus 205 ~----~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~--~~~~-~C~-----~~~~~P~i~f~f-gg~~~~l~ 267 (325)
T cd05490 205 G----GCEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQG--EYMI-DCE-----KIPTLPVISFSL-GGKVYPLT 267 (325)
T ss_pred C----CCEEEECCCCccccCCHHHHHHHHHHhCCc----cccCC--CEEe-ccc-----ccccCCCEEEEE-CCEEEEEC
Confidence 2 246999999999999999999999887542 22233 3333 254 446789999999 56999999
Q ss_pred CCceEEEeC--CCeEEE-EEEecC---CCCCeeeechhhhcceEEEEeCCCCEEEEee
Q 011746 423 VRGTLVVFS--VSQVCL-AFAIFP---SDPNSISLGNVQQRGYEVHYDVAGRRLGFGP 474 (478)
Q Consensus 423 ~~~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 474 (478)
|++|+++.. ....|+ +|...+ .....||||++|||++|+|||.+++|||||+
T Consensus 268 ~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 268 GEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred hHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 999999864 346898 676532 2234799999999999999999999999996
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.2e-52 Score=438.44 Aligned_cols=299 Identities=22% Similarity=0.394 Sum_probs=242.9
Q ss_pred CCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCC
Q 011746 124 TAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQ 201 (478)
Q Consensus 124 ~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~ 201 (478)
+.+.+|+++|+||||||+|.|++||||+++||+|..|.. |.. ++.|||++|+||+.+.+..
T Consensus 116 ~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~--~~~yd~s~SSTy~~~~~~~--------------- 178 (482)
T PTZ00165 116 FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAP--HRKFDPKKSSTYTKLKLGD--------------- 178 (482)
T ss_pred ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccc--cCCCCccccCCcEecCCCC---------------
Confidence 388999999999999999999999999999999999986 654 4799999999999852111
Q ss_pred CCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCC-CC--CCcceEEecCCCCCc-----
Q 011746 202 DNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTS-DQ--NGASGIMGLDRSPIS----- 273 (478)
Q Consensus 202 ~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~S----- 273 (478)
. ...+.+.||+| ...|.+++|+|+|+ +.. ++++.|||++...+ .| ..+|||||||+..++
T Consensus 179 -~----~~~~~i~YGsG-s~~G~l~~DtV~ig-~l~-----i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~ 246 (482)
T PTZ00165 179 -E----SAETYIQYGTG-ECVLALGKDTVKIG-GLK-----VKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESK 246 (482)
T ss_pred -c----cceEEEEeCCC-cEEEEEEEEEEEEC-CEE-----EccEEEEEEEeccccccccccccceeecCCCcccccccC
Confidence 0 12567999999 57899999999994 455 89999999998754 34 468999999998753
Q ss_pred ----ccccccccc------ceEeccCCCCCccEEEeCCCCC-cC--CCCceEeeceeCCCCCccEEEEEeEEEECCeEee
Q 011746 274 ----IISQTNTSY------FSYCLPSPYGSTGYITFGRPDA-VN--SKFIKYTPIITTPEQSEYYDITITGISVGGEKLP 340 (478)
Q Consensus 274 ----l~sQl~~~~------FS~cL~~~~~~~G~L~fG~~d~-~~--~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~ 340 (478)
++.|+.+++ ||+||++.....|.|+|||+|+ ++ .+++.|+|+.. ..||.|++++|+||++.+.
T Consensus 247 ~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~~~ 322 (482)
T PTZ00165 247 KALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGKSLG 322 (482)
T ss_pred CCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCEEee
Confidence 333443322 9999987655689999999998 44 56899999987 6799999999999998876
Q ss_pred eCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcC--C--
Q 011746 341 FNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLG--G-- 416 (478)
Q Consensus 341 i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~g--g-- 416 (478)
..... ..+|+||||+++++|++++++|.+++... +.|.+ ...+|+|+|+|.| |
T Consensus 323 ~~~~~---~~aIiDTGTSli~lP~~~~~~i~~~i~~~---------------~~C~~-----~~~lP~itf~f~g~~g~~ 379 (482)
T PTZ00165 323 FCDRK---CKAAIDTGSSLITGPSSVINPLLEKIPLE---------------EDCSN-----KDSLPRISFVLEDVNGRK 379 (482)
T ss_pred ecCCc---eEEEEcCCCccEeCCHHHHHHHHHHcCCc---------------ccccc-----cccCCceEEEECCCCCce
Confidence 64332 45999999999999999999998876432 13853 3578999999964 1
Q ss_pred cEEEecCCceEEEe----CCCeEEE-EEEecCC---CCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 417 VDLELDVRGTLVVF----SVSQVCL-AFAIFPS---DPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 417 ~~~~l~~~~~~~~~----~~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
++++|+|++|+++. ..+..|+ +|...+. .++.||||++|||++|+|||.+++|||||+++|+
T Consensus 380 v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 380 IKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred EEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 38999999999974 2456896 8886532 2357999999999999999999999999999884
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.4e-52 Score=422.40 Aligned_cols=294 Identities=24% Similarity=0.416 Sum_probs=243.6
Q ss_pred CeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCC
Q 011746 126 VDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDN 203 (478)
Q Consensus 126 ~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~ 203 (478)
+..|+++|.||||+|++.|+|||||+++||+|..|.. |.. .+.|||++|+||+.. +
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~--~~~f~~~~SsT~~~~--------------------~ 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTN--HTKFNPSQSSTYSTN--------------------G 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccc--cCCCCcccCCCceEC--------------------C
Confidence 4689999999999999999999999999999999985 765 479999999999865 3
Q ss_pred CCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCCCC------Ccc
Q 011746 204 CSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRSP------ISI 274 (478)
Q Consensus 204 C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~------~Sl 274 (478)
|.|.+.|++|+ +.|.+++|+++|+ +.. ++++.|||++...+. | ...+||||||+.. .++
T Consensus 59 -----~~~~~~Yg~Gs-~~G~~~~D~i~~g-~~~-----i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~ 126 (318)
T cd05477 59 -----ETFSLQYGSGS-LTGIFGYDTVTVQ-GII-----ITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTV 126 (318)
T ss_pred -----cEEEEEECCcE-EEEEEEeeEEEEC-CEE-----EcCEEEEEEEecccccccccceeeEeecCcccccccCCCCH
Confidence 78999999994 7999999999994 445 899999999987553 2 4679999999864 356
Q ss_pred cccccccc------ceEeccCCC-CCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccc
Q 011746 275 ISQTNTSY------FSYCLPSPY-GSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYI 346 (478)
Q Consensus 275 ~sQl~~~~------FS~cL~~~~-~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~ 346 (478)
++||..+. ||+||.+.. ...|.|+||++|+ ++.+++.|+|+.. ..+|.|++++|+||++++.+....
T Consensus 127 ~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~- 201 (318)
T cd05477 127 MQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCSQG- 201 (318)
T ss_pred HHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccCCC-
Confidence 66665443 999998752 3469999999998 8889999999976 679999999999999987643322
Q ss_pred cCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCce
Q 011746 347 TKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGT 426 (478)
Q Consensus 347 ~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~ 426 (478)
..+||||||++++||+++|++|++++.+.+ ...+ +|.++|.....+|+|+|+|+ |+++.|++++|
T Consensus 202 --~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~----~~~~--------~~~~~C~~~~~~p~l~~~f~-g~~~~v~~~~y 266 (318)
T cd05477 202 --CQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ----DQYG--------QYVVNCNNIQNLPTLTFTIN-GVSFPLPPSAY 266 (318)
T ss_pred --ceeeECCCCccEECCHHHHHHHHHHhCCcc----ccCC--------CEEEeCCccccCCcEEEEEC-CEEEEECHHHe
Confidence 459999999999999999999999886542 1122 45555555677999999995 59999999999
Q ss_pred EEEeCCCeEEE-EEEecC----CCCCeeeechhhhcceEEEEeCCCCEEEEeeC
Q 011746 427 LVVFSVSQVCL-AFAIFP----SDPNSISLGNVQQRGYEVHYDVAGRRLGFGPG 475 (478)
Q Consensus 427 ~~~~~~~~~Cl-~~~~~~----~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 475 (478)
++.. ...|+ +|.+.. .+.+.||||+.|||++|++||++++|||||++
T Consensus 267 ~~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 267 ILQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EecC--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 9875 56896 886531 12247999999999999999999999999985
No 10
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=9.4e-53 Score=423.21 Aligned_cols=290 Identities=23% Similarity=0.405 Sum_probs=237.1
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCC
Q 011746 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSS 206 (478)
Q Consensus 129 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 206 (478)
|+++|+||||+|++.|+|||||+++||+|..|.. |..+ +.|||++|+||+.. +
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~--~~y~~~~SsT~~~~--------------------~--- 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH--NRFQPSESSTYVSN--------------------G--- 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc--ceECCCCCcccccC--------------------C---
Confidence 8999999999999999999999999999999984 8654 78999999999765 3
Q ss_pred CCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCCCCCcc------ccc
Q 011746 207 EECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRSPISI------ISQ 277 (478)
Q Consensus 207 ~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl------~sQ 277 (478)
|.|.+.|++| .+.|.+++|+|+|+ +.. ++++.|||+....+. | ..++||||||++..+. +.+
T Consensus 56 --~~~~i~Yg~g-~~~G~~~~D~v~ig-~~~-----~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~ 126 (316)
T cd05486 56 --EAFSIQYGTG-SLTGIIGIDQVTVE-GIT-----VQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDN 126 (316)
T ss_pred --cEEEEEeCCc-EEEEEeeecEEEEC-CEE-----EcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHH
Confidence 7899999999 58999999999994 445 899999999876552 3 4689999999987653 333
Q ss_pred cccc----c--ceEeccCCC--CCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccC
Q 011746 278 TNTS----Y--FSYCLPSPY--GSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITK 348 (478)
Q Consensus 278 l~~~----~--FS~cL~~~~--~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~ 348 (478)
+..+ . ||+||.+.+ ...|.|+||++|+ ++.+++.|+|+.. ..+|.|++++|+||++.+..+..
T Consensus 127 l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~~~---- 198 (316)
T cd05486 127 MMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCSDG---- 198 (316)
T ss_pred HHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecCCC----
Confidence 3322 2 999998643 2479999999998 8899999999976 67999999999999987754332
Q ss_pred CceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceEE
Q 011746 349 LSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLV 428 (478)
Q Consensus 349 ~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~ 428 (478)
..+||||||+++++|++++++|.+++.+. ...+ +|.++|.....+|+|+|+| +|++++|++++|++
T Consensus 199 ~~aiiDTGTs~~~lP~~~~~~l~~~~~~~-----~~~~--------~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~ 264 (316)
T cd05486 199 CQAIVDTGTSLITGPSGDIKQLQNYIGAT-----ATDG--------EYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTL 264 (316)
T ss_pred CEEEECCCcchhhcCHHHHHHHHHHhCCc-----ccCC--------cEEEeccccccCCCEEEEE-CCEEEEeCHHHeEE
Confidence 46999999999999999999998776532 1122 3334444456799999999 45999999999998
Q ss_pred Ee--CCCeEEE-EEEecC---CCCCeeeechhhhcceEEEEeCCCCEEEEee
Q 011746 429 VF--SVSQVCL-AFAIFP---SDPNSISLGNVQQRGYEVHYDVAGRRLGFGP 474 (478)
Q Consensus 429 ~~--~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 474 (478)
.. +....|+ +|.... ...+.||||++|||++|+|||.+++|||||+
T Consensus 265 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 265 EDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred ecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 75 3456897 676542 2234799999999999999999999999996
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=6.1e-52 Score=418.00 Aligned_cols=292 Identities=24% Similarity=0.389 Sum_probs=240.7
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQD 202 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~ 202 (478)
.+..|+++|.||||+|++.|+|||||+++||+|.+|.. |..+ +.|||++|+|++..
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~--~~y~~~~Sst~~~~-------------------- 64 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH--SKYDSSASSTYKAN-------------------- 64 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc--ceECCCCCcceeeC--------------------
Confidence 57889999999999999999999999999999999984 8754 69999999998754
Q ss_pred CCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCCCCCccccc--
Q 011746 203 NCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRSPISIISQ-- 277 (478)
Q Consensus 203 ~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl~sQ-- 277 (478)
+ |.|.+.|++|+ +.|.+++|+++| ++.. ++++.|||++...+. | ...+||||||++..+...+
T Consensus 65 ~-----~~~~~~y~~g~-~~G~~~~D~v~i-g~~~-----~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~ 132 (320)
T cd05488 65 G-----TEFKIQYGSGS-LEGFVSQDTLSI-GDLT-----IKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVP 132 (320)
T ss_pred C-----CEEEEEECCce-EEEEEEEeEEEE-CCEE-----ECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCC
Confidence 3 78999999995 899999999999 4445 889999999877664 2 4679999999988765432
Q ss_pred ----cccc------cceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccc
Q 011746 278 ----TNTS------YFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYI 346 (478)
Q Consensus 278 ----l~~~------~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~ 346 (478)
+..+ .||+||.+.....|.|+||++|+ ++.+++.|+|+.. ..+|.|++++|+||++.+....
T Consensus 133 ~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~--- 205 (320)
T cd05488 133 PFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELEN--- 205 (320)
T ss_pred HHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCC---
Confidence 1111 29999998655689999999998 8889999999986 6789999999999998876442
Q ss_pred cCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCce
Q 011746 347 TKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGT 426 (478)
Q Consensus 347 ~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~ 426 (478)
..++|||||++++||++++++|.+++.+.. ... .+|.++|.....+|.|+|+|. |++++|++++|
T Consensus 206 --~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~----~~~--------~~~~~~C~~~~~~P~i~f~f~-g~~~~i~~~~y 270 (320)
T cd05488 206 --TGAAIDTGTSLIALPSDLAEMLNAEIGAKK----SWN--------GQYTVDCSKVDSLPDLTFNFD-GYNFTLGPFDY 270 (320)
T ss_pred --CeEEEcCCcccccCCHHHHHHHHHHhCCcc----ccC--------CcEEeeccccccCCCEEEEEC-CEEEEECHHHh
Confidence 359999999999999999999988875431 112 245555555567999999995 59999999999
Q ss_pred EEEeCCCeEEE-EEEecC---CCCCeeeechhhhcceEEEEeCCCCEEEEee
Q 011746 427 LVVFSVSQVCL-AFAIFP---SDPNSISLGNVQQRGYEVHYDVAGRRLGFGP 474 (478)
Q Consensus 427 ~~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 474 (478)
+++. ...|+ .+...+ ...+.||||++|||++|+|||.+++|||||+
T Consensus 271 ~~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 271 TLEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred eecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 9865 45798 555432 1234799999999999999999999999996
No 12
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.2e-51 Score=423.06 Aligned_cols=312 Identities=24% Similarity=0.363 Sum_probs=240.3
Q ss_pred eeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCC
Q 011746 127 DEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSS 206 (478)
Q Consensus 127 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 206 (478)
.+|+++|.||||+|++.|+|||||+++||+|.+|..| ++.|||++|+|++.. +
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~----~~~f~~~~SsT~~~~--------------------~--- 54 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI----HTYFHRELSSTYRDL--------------------G--- 54 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc----cccCCchhCcCcccC--------------------C---
Confidence 4699999999999999999999999999999988433 368999999999876 4
Q ss_pred CCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC---CCcceEEecCCCCC-----------
Q 011746 207 EECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ---NGASGIMGLDRSPI----------- 272 (478)
Q Consensus 207 ~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~----------- 272 (478)
|.|.+.|++| .+.|.+++|+|+|++... . .-.+.|++.....+.+ ...+||||||++.+
T Consensus 55 --~~~~i~Yg~G-s~~G~~~~D~v~ig~~~~---~-~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~ 127 (364)
T cd05473 55 --KGVTVPYTQG-SWEGELGTDLVSIPKGPN---V-TFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFF 127 (364)
T ss_pred --ceEEEEECcc-eEEEEEEEEEEEECCCCc---c-ceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHH
Confidence 7899999999 579999999999953211 0 1123456766655544 25799999999866
Q ss_pred -cccccccccc-ceEeccC---------CCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEee
Q 011746 273 -SIISQTNTSY-FSYCLPS---------PYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLP 340 (478)
Q Consensus 273 -Sl~sQl~~~~-FS~cL~~---------~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~ 340 (478)
++++|...+. ||++|.. .....|.|+||++|+ ++.+++.|+|+.. ..+|.|++++|+||++.+.
T Consensus 128 ~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~ 203 (364)
T cd05473 128 DSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLN 203 (364)
T ss_pred HHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEecc
Confidence 4566665443 9997632 112379999999998 8899999999976 5789999999999999987
Q ss_pred eCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCC-CCCCcccceecCCCcccccCeEEEEEcCC---
Q 011746 341 FNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKAD-DEDDFDTCYDLSAYETVVVPKITFHFLGG--- 416 (478)
Q Consensus 341 i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~d~C~~~~~~~~~~~P~i~~~f~gg--- 416 (478)
++...+...++||||||++++||+++|++|.+++++++.. +..... ......+|++........+|+|+|+|+|+
T Consensus 204 ~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~ 282 (364)
T cd05473 204 LDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSS 282 (364)
T ss_pred cccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCccccCcceeecccccCchHhhCCcEEEEEccCCCC
Confidence 6554443346999999999999999999999999987531 111110 01112358865432234699999999763
Q ss_pred --cEEEecCCceEEEeC---CCeEEEEEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 417 --VDLELDVRGTLVVFS---VSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 417 --~~~~l~~~~~~~~~~---~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
.+++|+|++|+.... ....|+++..... .+.||||++|||++|+|||++++|||||+++|.
T Consensus 283 ~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~-~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 283 QSFRITILPQLYLRPVEDHGTQLDCYKFAISQS-TNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred ceEEEEECHHHhhhhhccCCCcceeeEEeeecC-CCceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 478999999998652 2468986543322 246999999999999999999999999999995
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.7e-51 Score=413.77 Aligned_cols=294 Identities=24% Similarity=0.401 Sum_probs=240.5
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC----CCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI----HCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNG 200 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 200 (478)
.+..|+++|.||||+|++.|++||||+++||+|..|. .|.. .+.|||++|+|++..
T Consensus 8 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~--~~~y~~~~Sst~~~~------------------ 67 (329)
T cd05485 8 MDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLL--HNKYDSTKSSTYKKN------------------ 67 (329)
T ss_pred cCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccC--CCeECCcCCCCeEEC------------------
Confidence 7799999999999999999999999999999999997 3653 368999999999865
Q ss_pred CCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCCCCCcc---
Q 011746 201 QDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRSPISI--- 274 (478)
Q Consensus 201 ~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl--- 274 (478)
+ |.|.+.|++|+ +.|.+++|+++|+ +.. ++++.|||+.+..+. | ...+||||||++..|.
T Consensus 68 --~-----~~~~i~Y~~g~-~~G~~~~D~v~ig-~~~-----~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 133 (329)
T cd05485 68 --G-----TEFAIQYGSGS-LSGFLSTDTVSVG-GVS-----VKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGV 133 (329)
T ss_pred --C-----eEEEEEECCce-EEEEEecCcEEEC-CEE-----ECCEEEEEEEecCCccccccccceEEEcCCccccccCC
Confidence 3 78999999995 8999999999994 445 889999999877653 3 4679999999987653
Q ss_pred ---ccccccc------cceEeccCCCC--CccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeC
Q 011746 275 ---ISQTNTS------YFSYCLPSPYG--STGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFN 342 (478)
Q Consensus 275 ---~sQl~~~------~FS~cL~~~~~--~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~ 342 (478)
+.|+..+ .||+||.+..+ ..|.|+||++|+ ++.+++.|+|+.. +.+|.|++++|+|+++.+...
T Consensus 134 ~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~~ 209 (329)
T cd05485 134 VPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCSG 209 (329)
T ss_pred CCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeecCC
Confidence 2333322 29999986532 479999999998 7889999999975 679999999999999876421
Q ss_pred cccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEec
Q 011746 343 STYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELD 422 (478)
Q Consensus 343 ~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~ 422 (478)
...+||||||++++||++++++|.+++.+. ....+ ||.++|.....+|+|+|+| ||+++.|+
T Consensus 210 -----~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~~~--------~~~~~C~~~~~~p~i~f~f-gg~~~~i~ 271 (329)
T cd05485 210 -----GCQAIADTGTSLIAGPVDEIEKLNNAIGAK----PIIGG--------EYMVNCSAIPSLPDITFVL-GGKSFSLT 271 (329)
T ss_pred -----CcEEEEccCCcceeCCHHHHHHHHHHhCCc----cccCC--------cEEEeccccccCCcEEEEE-CCEEeEEC
Confidence 135999999999999999999998887643 11112 4555555556789999999 56999999
Q ss_pred CCceEEEeC--CCeEEE-EEEecC---CCCCeeeechhhhcceEEEEeCCCCEEEEee
Q 011746 423 VRGTLVVFS--VSQVCL-AFAIFP---SDPNSISLGNVQQRGYEVHYDVAGRRLGFGP 474 (478)
Q Consensus 423 ~~~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 474 (478)
+++|+++.. ....|+ +|...+ ...+.||||+.|||++|+|||++++|||||+
T Consensus 272 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 272 GKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred hHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 999999864 346898 677532 2234799999999999999999999999985
No 14
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=8.4e-51 Score=409.18 Aligned_cols=284 Identities=24% Similarity=0.419 Sum_probs=232.8
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC---CCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI---HCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQ 201 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~ 201 (478)
.+.+|+++|.||||+|++.|+|||||+++||+|..|. .|..+ +.|||++|+||+..
T Consensus 7 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~------------------- 65 (317)
T cd06098 7 LDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH--SKYKSSKSSTYKKN------------------- 65 (317)
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc--CcCCcccCCCcccC-------------------
Confidence 6899999999999999999999999999999999996 48754 79999999998765
Q ss_pred CCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCCCCCcc----
Q 011746 202 DNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRSPISI---- 274 (478)
Q Consensus 202 ~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl---- 274 (478)
+ +.+.+.|++| .+.|.+++|+|+|+ ... ++++.|||++...+. | ..++||||||+...+.
T Consensus 66 -~-----~~~~i~Yg~G-~~~G~~~~D~v~ig-~~~-----v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 132 (317)
T cd06098 66 -G-----TSASIQYGTG-SISGFFSQDSVTVG-DLV-----VKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAV 132 (317)
T ss_pred -C-----CEEEEEcCCc-eEEEEEEeeEEEEC-CEE-----ECCEEEEEEEecCCccccccccceeccccccchhhcCCC
Confidence 2 5789999999 57999999999994 445 899999999876542 3 4689999999986653
Q ss_pred ------cccccc-c-cceEeccCCC--CCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCc
Q 011746 275 ------ISQTNT-S-YFSYCLPSPY--GSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNS 343 (478)
Q Consensus 275 ------~sQl~~-~-~FS~cL~~~~--~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~ 343 (478)
++|... + .||+||.+.. ...|.|+||++|+ ++.+++.|+|+.. ..+|.|++++|+||++.+....
T Consensus 133 ~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~ 208 (317)
T cd06098 133 PVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCA 208 (317)
T ss_pred CHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeecC
Confidence 233221 1 2999998652 2479999999998 8899999999975 6799999999999999876544
Q ss_pred ccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecC
Q 011746 344 TYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDV 423 (478)
Q Consensus 344 ~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 423 (478)
.. ..+||||||+++++|++++++|. +.+ .|++ ...+|+|+|+| ||+.++|++
T Consensus 209 ~~---~~aivDTGTs~~~lP~~~~~~i~------------------~~~-~C~~-----~~~~P~i~f~f-~g~~~~l~~ 260 (317)
T cd06098 209 GG---CAAIADSGTSLLAGPTTIVTQIN------------------SAV-DCNS-----LSSMPNVSFTI-GGKTFELTP 260 (317)
T ss_pred CC---cEEEEecCCcceeCCHHHHHhhh------------------ccC-Cccc-----cccCCcEEEEE-CCEEEEECh
Confidence 32 35999999999999998876653 122 3863 24689999999 569999999
Q ss_pred CceEEEeC--CCeEEE-EEEecC---CCCCeeeechhhhcceEEEEeCCCCEEEEee
Q 011746 424 RGTLVVFS--VSQVCL-AFAIFP---SDPNSISLGNVQQRGYEVHYDVAGRRLGFGP 474 (478)
Q Consensus 424 ~~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 474 (478)
++|+++.. ....|+ +|...+ ...+.||||++|||++|+|||.+++|||||+
T Consensus 261 ~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 261 EQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred HHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 99998763 345897 676532 2234799999999999999999999999996
No 15
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=6.9e-51 Score=411.38 Aligned_cols=294 Identities=23% Similarity=0.406 Sum_probs=239.4
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC----CCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH----CSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNG 200 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~----C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 200 (478)
.+..|+++|+||||+|++.|+|||||+++||+|..|.. |.. ++.|||++|+||+..
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~--~~~y~~~~SsT~~~~------------------ 64 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVT--HNLYDASDSSTYKEN------------------ 64 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcc--cCcCCCCCCeeeeEC------------------
Confidence 67899999999999999999999999999999888874 543 379999999999865
Q ss_pred CCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCC-CC--CCcceEEecCCCCCc----
Q 011746 201 QDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTS-DQ--NGASGIMGLDRSPIS---- 273 (478)
Q Consensus 201 ~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~S---- 273 (478)
+ |.|.+.|++| .+.|.+++|+|+|+ +.. + ++.|||+....+ .| ...+||||||++..+
T Consensus 65 --~-----~~~~~~Yg~g-~~~G~~~~D~v~~g-~~~-----~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 129 (326)
T cd05487 65 --G-----TEFTIHYASG-TVKGFLSQDIVTVG-GIP-----V-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGV 129 (326)
T ss_pred --C-----EEEEEEeCCc-eEEEEEeeeEEEEC-CEE-----e-eEEEEEEEeccCCccceeecceEEecCChhhcccCC
Confidence 3 7899999999 58999999999995 333 4 478999987643 22 568999999997654
Q ss_pred ------ccccccccc--ceEeccCCC--CCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeC
Q 011746 274 ------IISQTNTSY--FSYCLPSPY--GSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFN 342 (478)
Q Consensus 274 ------l~sQl~~~~--FS~cL~~~~--~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~ 342 (478)
|++|..... ||+||.+.+ ...|.|+||++|+ ++.+++.|+|+.. +.+|.|++++|+||++.+...
T Consensus 130 ~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~ 205 (326)
T cd05487 130 TPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCE 205 (326)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecC
Confidence 445533222 999998753 3479999999998 8899999999875 679999999999999987543
Q ss_pred cccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEec
Q 011746 343 STYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELD 422 (478)
Q Consensus 343 ~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~ 422 (478)
.. ..+||||||++++||++++++|++++.+.. . .+ +|.++|.....+|+|+|+| ||++++|+
T Consensus 206 ~~----~~aiiDSGts~~~lP~~~~~~l~~~~~~~~---~--~~--------~y~~~C~~~~~~P~i~f~f-gg~~~~v~ 267 (326)
T cd05487 206 DG----CTAVVDTGASFISGPTSSISKLMEALGAKE---R--LG--------DYVVKCNEVPTLPDISFHL-GGKEYTLS 267 (326)
T ss_pred CC----CEEEECCCccchhCcHHHHHHHHHHhCCcc---c--CC--------CEEEeccccCCCCCEEEEE-CCEEEEeC
Confidence 32 359999999999999999999998886431 1 22 3334444556789999999 56999999
Q ss_pred CCceEEEeC--CCeEEE-EEEecC---CCCCeeeechhhhcceEEEEeCCCCEEEEeeC
Q 011746 423 VRGTLVVFS--VSQVCL-AFAIFP---SDPNSISLGNVQQRGYEVHYDVAGRRLGFGPG 475 (478)
Q Consensus 423 ~~~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 475 (478)
+++|+++.. ....|+ +|...+ ...+.||||++|||++|+|||++++|||||++
T Consensus 268 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 268 SSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred HHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 999999864 356897 787643 22347999999999999999999999999985
No 16
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.8e-50 Score=397.06 Aligned_cols=258 Identities=29% Similarity=0.514 Sum_probs=216.5
Q ss_pred eeEEEEEEeCCCCcEEEEEEEcCCCceeeeCC-CCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCC
Q 011746 127 DEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCK-PCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCS 205 (478)
Q Consensus 127 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~-~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~ 205 (478)
++|+++|+||||+|++.|++||||+++||+|+ +|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 57999999999999999999999999999994 67555
Q ss_pred CCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC----CCcceEEecCCCCCccccccccc
Q 011746 206 SEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ----NGASGIMGLDRSPISIISQTNTS 281 (478)
Q Consensus 206 ~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~----~~~~GilGLg~~~~Sl~sQl~~~ 281 (478)
.|.|.+.|+||+.+.|.+++|+|+|+.. ++...++++.|||++.+.+.+ ...+||||||+++.|+++|+..+
T Consensus 39 --~c~~~i~Ygd~~~~~G~~~~D~v~~~~~--~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~ 114 (273)
T cd05475 39 --QCDYEIEYADGGSSMGVLVTDIFSLKLT--NGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQ 114 (273)
T ss_pred --cCccEeEeCCCCceEEEEEEEEEEEeec--CCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhc
Confidence 0889999998889999999999999532 222337899999998775532 46899999999999999998764
Q ss_pred c-----ceEeccCCCCCccEEEeCCCCCcCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEecc
Q 011746 282 Y-----FSYCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSG 356 (478)
Q Consensus 282 ~-----FS~cL~~~~~~~G~L~fG~~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSG 356 (478)
. ||+||++. ..|.|+||+.. ++.+++.|+|+..++. ..+|.|++.+|+||++.+.. . ..++|||||
T Consensus 115 ~~i~~~Fs~~l~~~--~~g~l~~G~~~-~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~--~---~~~~ivDTG 185 (273)
T cd05475 115 GIIKNVIGHCLSSN--GGGFLFFGDDL-VPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGG--K---GLEVVFDSG 185 (273)
T ss_pred CCcCceEEEEccCC--CCeEEEECCCC-CCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcC--C---CceEEEECC
Confidence 3 99999873 46999999643 5668899999988652 57899999999999985421 1 256999999
Q ss_pred CceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCC---cEEEecCCceEEEeCCC
Q 011746 357 NEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGG---VDLELDVRGTLVVFSVS 433 (478)
Q Consensus 357 T~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg---~~~~l~~~~~~~~~~~~ 433 (478)
|++++||+++| +|+|+|+|+++ ++++|++++|++....+
T Consensus 186 Tt~t~lp~~~y--------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~ 227 (273)
T cd05475 186 SSYTYFNAQAY--------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKG 227 (273)
T ss_pred CceEEcCCccc--------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCC
Confidence 99999999876 47899999764 79999999999987666
Q ss_pred eEEEEEEecCC--CCCeeeechhhhcceEEEEeCCCCEEEEeeCCC
Q 011746 434 QVCLAFAIFPS--DPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNC 477 (478)
Q Consensus 434 ~~Cl~~~~~~~--~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C 477 (478)
..|+++..... ..+.||||+.|||++|++||++++|||||+++|
T Consensus 228 ~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 228 NVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 78998876532 234799999999999999999999999999999
No 17
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=4.6e-50 Score=417.84 Aligned_cols=301 Identities=21% Similarity=0.339 Sum_probs=239.6
Q ss_pred ceeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCccccccCCChhhhh
Q 011746 114 SFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSASCRI 191 (478)
Q Consensus 114 ~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 191 (478)
...+|+..- .+.+|+++|+||||+|++.|+|||||+++||+|..|.. |.. ++.|||++|+||+..
T Consensus 127 ~~~v~L~n~--~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~--~~~yd~s~SsT~~~~--------- 193 (453)
T PTZ00147 127 FDNVELKDL--ANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCET--KNLYDSSKSKTYEKD--------- 193 (453)
T ss_pred CCeeecccc--CCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccC--CCccCCccCcceEEC---------
Confidence 345666542 67899999999999999999999999999999999985 654 479999999999865
Q ss_pred hhcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC---C--CCcceEEe
Q 011746 192 LRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD---Q--NGASGIMG 266 (478)
Q Consensus 192 ~~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~---~--~~~~GilG 266 (478)
+ |.|.+.|++| .+.|.+++|+|+|+ +.. ++ ..|+|+.+..+. + ..+|||||
T Consensus 194 -----------~-----~~f~i~Yg~G-svsG~~~~DtVtiG-~~~-----v~-~qF~~~~~~~~f~~~~~~~~~DGILG 249 (453)
T PTZ00147 194 -----------G-----TKVEMNYVSG-TVSGFFSKDLVTIG-NLS-----VP-YKFIEVTDTNGFEPFYTESDFDGIFG 249 (453)
T ss_pred -----------C-----CEEEEEeCCC-CEEEEEEEEEEEEC-CEE-----EE-EEEEEEEeccCcccccccccccceec
Confidence 3 7899999999 58999999999994 444 66 579998876542 2 36899999
Q ss_pred cCCCCCcc------ccccccc----c--ceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEE
Q 011746 267 LDRSPISI------ISQTNTS----Y--FSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGIS 333 (478)
Q Consensus 267 Lg~~~~Sl------~sQl~~~----~--FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~ 333 (478)
||++++|. +.||..+ . ||+||++.....|.|+|||+|+ ++.+++.|+|+.. +.+|.|.++ +.
T Consensus 250 LG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~ 324 (453)
T PTZ00147 250 LGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VH 324 (453)
T ss_pred ccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EE
Confidence 99987653 2233332 2 9999987655689999999998 8899999999964 679999998 57
Q ss_pred ECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEE
Q 011746 334 VGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHF 413 (478)
Q Consensus 334 vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f 413 (478)
+|+... . ...+||||||+++++|++++++|.+++.+.. .+. .+ .+ +.+|+. ..+|+|+|+|
T Consensus 325 vg~~~~----~---~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~-~~--~y-~~~C~~------~~lP~~~f~f 385 (453)
T PTZ00147 325 FGNVSS----E---KANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPF-LP--LY-VTTCNN------TKLPTLEFRS 385 (453)
T ss_pred ECCEec----C---ceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCC-CC--eE-EEeCCC------CCCCeEEEEE
Confidence 776432 1 2469999999999999999999998885431 111 11 22 234752 5689999999
Q ss_pred cCCcEEEecCCceEEEeC--CCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 414 LGGVDLELDVRGTLVVFS--VSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 414 ~gg~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
. |+.++|+|++|+.+.. ....|+ +|.+.+...+.||||++|||++|+|||.+++|||||+++
T Consensus 386 ~-g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 386 P-NKVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred C-CEEEEECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 5 5999999999997642 346797 787765444579999999999999999999999999975
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.2e-49 Score=389.08 Aligned_cols=254 Identities=40% Similarity=0.769 Sum_probs=221.7
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCCC
Q 011746 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSE 207 (478)
Q Consensus 128 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~ 207 (478)
+|+++|+||||+|++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 699999999999999999999999999986
Q ss_pred CCCceeecCCCCceeeEEEEEEEEEccCC-CCCceeccceeeeeeecCCCCC-CCcceEEecCCCCCccccccccc--cc
Q 011746 208 ECPYNIAYADNSSDGGFWAADRITIQEAN-RDGYFSWYPFLLGCTNNNTSDQ-NGASGIMGLDRSPISIISQTNTS--YF 283 (478)
Q Consensus 208 ~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~-~~~~~~~~~~~FGc~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~--~F 283 (478)
|.|.+.|+||+.+.|.+++|+|+|++.. . ++++.|||+....+.. ..++||||||+...|+++|+..+ .|
T Consensus 31 -~~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~-----~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~F 104 (265)
T cd05476 31 -CSYEYSYGDGSSTSGVLATETFTFGDSSVS-----VPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKF 104 (265)
T ss_pred -CceEeEeCCCceeeeeEEEEEEEecCCCCc-----cCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCee
Confidence 2478899999899999999999996542 5 8999999999887522 57899999999999999999887 49
Q ss_pred eEeccCC--CCCccEEEeCCCCCcCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCccccc-----CCceEEecc
Q 011746 284 SYCLPSP--YGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT-----KLSAIIDSG 356 (478)
Q Consensus 284 S~cL~~~--~~~~G~L~fG~~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~-----~~~~iiDSG 356 (478)
|+||++. ....|+|+||++|+.+.+++.|+|++.++....+|.|++++|+|+++.+.+++..+. ...+|||||
T Consensus 105 s~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTG 184 (265)
T cd05476 105 SYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSG 184 (265)
T ss_pred EEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCC
Confidence 9999875 345899999999866778999999998754567999999999999999875433221 356999999
Q ss_pred CceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceEEEeCCCeEE
Q 011746 357 NEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVC 436 (478)
Q Consensus 357 T~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~C 436 (478)
|++++||+++| |+|+|+|+|+.++.+++++|+++...+..|
T Consensus 185 Ts~~~lp~~~~---------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C 225 (265)
T cd05476 185 TTLTYLPDPAY---------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVC 225 (265)
T ss_pred CcceEcCcccc---------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEE
Confidence 99999999887 789999976799999999999977667899
Q ss_pred EEEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCC
Q 011746 437 LAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNC 477 (478)
Q Consensus 437 l~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C 477 (478)
+++.... ..+.+|||++|||++|++||.+++|||||+++|
T Consensus 226 ~~~~~~~-~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 226 LAILSSS-SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEEecCC-CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 9888763 345899999999999999999999999999999
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.6e-49 Score=409.01 Aligned_cols=300 Identities=22% Similarity=0.343 Sum_probs=237.5
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCccccccCCChhhhhh
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSASCRIL 192 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (478)
..+|+..- .+.+|+++|.||||+|++.|+|||||+++||+|..|.. |..+ +.|||++|+|++..
T Consensus 127 ~~~~l~d~--~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~--~~yd~s~SsT~~~~---------- 192 (450)
T PTZ00013 127 DVIELDDV--ANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK--NLYDSSKSKSYEKD---------- 192 (450)
T ss_pred Cceeeecc--CCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC--CCccCccCcccccC----------
Confidence 44565432 67899999999999999999999999999999999984 7654 69999999999765
Q ss_pred hcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC---C--CCcceEEec
Q 011746 193 RKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD---Q--NGASGIMGL 267 (478)
Q Consensus 193 ~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~---~--~~~~GilGL 267 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. ++ +.|+++.+..+. + ..++|||||
T Consensus 193 ----------~-----~~~~i~YG~Gs-v~G~~~~Dtv~iG-~~~-----~~-~~f~~~~~~~~~~~~~~~~~~dGIlGL 249 (450)
T PTZ00013 193 ----------G-----TKVDITYGSGT-VKGFFSKDLVTLG-HLS-----MP-YKFIEVTDTDDLEPIYSSSEFDGILGL 249 (450)
T ss_pred ----------C-----cEEEEEECCce-EEEEEEEEEEEEC-CEE-----Ec-cEEEEEEeccccccceecccccceecc
Confidence 4 78999999994 8999999999994 444 55 578888765321 2 368999999
Q ss_pred CCCCCc------ccccccccc------ceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEE
Q 011746 268 DRSPIS------IISQTNTSY------FSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISV 334 (478)
Q Consensus 268 g~~~~S------l~sQl~~~~------FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~v 334 (478)
|+...+ ++.|+..+. ||+||++.....|.|+|||+|+ ++.+++.|+|+.. ..+|.|+++ +.+
T Consensus 250 g~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~ 324 (450)
T PTZ00013 250 GWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHF 324 (450)
T ss_pred cCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEE
Confidence 998764 334444332 9999987655689999999998 8899999999965 679999998 677
Q ss_pred CCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEc
Q 011746 335 GGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFL 414 (478)
Q Consensus 335 gg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~ 414 (478)
|.... . ...+||||||+++++|+++++++.+++.... .+ ..+ .+. .+|+ ...+|+|+|+|.
T Consensus 325 G~~~~--~-----~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~-~~~--~y~-~~C~------~~~lP~i~F~~~ 385 (450)
T PTZ00013 325 GKQTM--Q-----KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VP-FLP--FYV-TTCD------NKEMPTLEFKSA 385 (450)
T ss_pred Cceec--c-----ccceEECCCCccccCCHHHHHHHHHHhCCee--cC-CCC--eEE-eecC------CCCCCeEEEEEC
Confidence 65432 1 2459999999999999999999988775431 11 111 222 2474 256899999995
Q ss_pred CCcEEEecCCceEEEe--CCCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 415 GGVDLELDVRGTLVVF--SVSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 415 gg~~~~l~~~~~~~~~--~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
|.+++|+|++|+.+. ..+..|+ ++.+.+.+.+.||||++|||++|+|||.+++|||||+++
T Consensus 386 -g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 386 -NNTYTLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred -CEEEEECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 599999999999764 2356897 777655444579999999999999999999999999975
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=7.5e-48 Score=380.75 Aligned_cols=261 Identities=30% Similarity=0.446 Sum_probs=215.5
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCCCC
Q 011746 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEE 208 (478)
Q Consensus 129 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~~ 208 (478)
|+++|+||||+|++.|+|||||+++||+|+.|..|..+..+.|||++|+|++..+ +
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~-------------------~----- 56 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP-------------------G----- 56 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC-------------------C-----
Confidence 8899999999999999999999999999999998877667889999999998651 2
Q ss_pred CCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCCCCCccc---------c
Q 011746 209 CPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRSPISII---------S 276 (478)
Q Consensus 209 c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl~---------s 276 (478)
|.|.+.|++|+.+.|.+++|+|+|+ +.. ++++.|||++...+. + ...+||||||+...+.. .
T Consensus 57 ~~~~i~Y~~G~~~~G~~~~D~v~ig-~~~-----~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~ 130 (278)
T cd06097 57 ATWSISYGDGSSASGIVYTDTVSIG-GVE-----VPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFE 130 (278)
T ss_pred cEEEEEeCCCCeEEEEEEEEEEEEC-CEE-----ECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHH
Confidence 7899999999779999999999994 445 899999999987652 2 57899999999866432 2
Q ss_pred ccccc----cceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCce
Q 011746 277 QTNTS----YFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSA 351 (478)
Q Consensus 277 Ql~~~----~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~ 351 (478)
++..+ .||+||.+ ...|.|+|||+|+ ++.+++.|+|+..+ ..+|.|++++|+||++...... ...+
T Consensus 131 ~l~~~~~~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~----~~~~ 201 (278)
T cd06097 131 NALSSLDAPLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRS----GFSA 201 (278)
T ss_pred HHHHhccCceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecC----CceE
Confidence 33222 29999986 3479999999998 88999999999763 5689999999999998443221 2469
Q ss_pred EEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceEEEeC
Q 011746 352 IIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFS 431 (478)
Q Consensus 352 iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~ 431 (478)
||||||+++++|.+++++|.+++.+. .+....+ +|.++|... +|+|+|+|
T Consensus 202 iiDSGTs~~~lP~~~~~~l~~~l~g~--~~~~~~~--------~~~~~C~~~--~P~i~f~~------------------ 251 (278)
T cd06097 202 IADTGTTLILLPDAIVEAYYSQVPGA--YYDSEYG--------GWVFPCDTT--LPDLSFAV------------------ 251 (278)
T ss_pred EeecCCchhcCCHHHHHHHHHhCcCC--cccCCCC--------EEEEECCCC--CCCEEEEE------------------
Confidence 99999999999999999999888432 1222222 455555543 89999999
Q ss_pred CCeEEEEEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEee
Q 011746 432 VSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGP 474 (478)
Q Consensus 432 ~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 474 (478)
.||||++|||++|+|||.+++|||||+
T Consensus 252 ----------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ----------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ----------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.7e-46 Score=371.36 Aligned_cols=269 Identities=24% Similarity=0.357 Sum_probs=222.5
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCCC
Q 011746 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSE 207 (478)
Q Consensus 128 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~ 207 (478)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 69999999999999999999999999998
Q ss_pred CCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCCCCcceEEecCCCCC-----------cccc
Q 011746 208 ECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPI-----------SIIS 276 (478)
Q Consensus 208 ~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~-----------Sl~s 276 (478)
.|.+.|++|+.+.|.+++|+|+|++ .. ++++.|||+++.. ..+||||||+.+. +++.
T Consensus 31 --~~~~~Y~~g~~~~G~~~~D~v~~g~-~~-----~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~ 98 (295)
T cd05474 31 --DFSISYGDGTSASGTWGTDTVSIGG-AT-----VKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPI 98 (295)
T ss_pred --eeEEEeccCCcEEEEEEEEEEEECC-eE-----ecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHH
Confidence 1678899988999999999999954 44 8899999999853 4799999999876 5777
Q ss_pred cccccc------ceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCC--CCccEEEEEeEEEECCeEeeeCccccc
Q 011746 277 QTNTSY------FSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPE--QSEYYDITITGISVGGEKLPFNSTYIT 347 (478)
Q Consensus 277 Ql~~~~------FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~--~~~~y~v~l~gi~vgg~~l~i~~~~~~ 347 (478)
|+..+. ||+||.+.+...|.|+||++|+ ++.+++.|+|+..++. ...+|.|++++|+|+++.+..+... .
T Consensus 99 ~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~-~ 177 (295)
T cd05474 99 ALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLS-K 177 (295)
T ss_pred HHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccC-C
Confidence 776543 9999998655689999999997 7889999999987542 2378999999999999887532211 1
Q ss_pred CCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceE
Q 011746 348 KLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTL 427 (478)
Q Consensus 348 ~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 427 (478)
...+||||||++++||.++|++|.+++.+.+. ...+ .+. ..|+. ... |+|+|+|.| ++++|++++|+
T Consensus 178 ~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~---~~~~--~~~-~~C~~-----~~~-p~i~f~f~g-~~~~i~~~~~~ 244 (295)
T cd05474 178 NLPALLDSGTTLTYLPSDIVDAIAKQLGATYD---SDEG--LYV-VDCDA-----KDD-GSLTFNFGG-ATISVPLSDLV 244 (295)
T ss_pred CccEEECCCCccEeCCHHHHHHHHHHhCCEEc---CCCc--EEE-EeCCC-----CCC-CEEEEEECC-eEEEEEHHHhE
Confidence 36799999999999999999999999987532 2222 222 24653 334 999999954 99999999999
Q ss_pred EEeC----CCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeC
Q 011746 428 VVFS----VSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPG 475 (478)
Q Consensus 428 ~~~~----~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 475 (478)
++.. ....|+ +|.+.+. +.+|||++|||++|++||.+++|||||++
T Consensus 245 ~~~~~~~~~~~~C~~~i~~~~~--~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 245 LPASTDDGGDGACYLGIQPSTS--DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred eccccCCCCCCCeEEEEEeCCC--CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9874 367895 8887654 48999999999999999999999999986
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.9e-44 Score=354.36 Aligned_cols=264 Identities=34% Similarity=0.596 Sum_probs=221.0
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCC--CCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCC
Q 011746 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPF--FDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSS 206 (478)
Q Consensus 129 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~--fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 206 (478)
|+++|.||||+|++.|++||||+++||+|..|..|..+.... |++..|+++...
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~------------------------ 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDT------------------------ 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecC------------------------
Confidence 789999999999999999999999999999999876554444 677776655432
Q ss_pred CCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC--CCcceEEecCCCC------Ccccccc
Q 011746 207 EECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ--NGASGIMGLDRSP------ISIISQT 278 (478)
Q Consensus 207 ~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~--~~~~GilGLg~~~------~Sl~sQl 278 (478)
.|.|.+.|++| .+.|.+++|+++|+ +.. ++++.|||++...+.+ ...+||||||+.. .+++.|+
T Consensus 57 -~~~~~~~Y~~g-~~~g~~~~D~v~~~-~~~-----~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l 128 (283)
T cd05471 57 -GCTFSITYGDG-SVTGGLGTDTVTIG-GLT-----IPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQL 128 (283)
T ss_pred -CCEEEEEECCC-eEEEEEEEeEEEEC-CEE-----EeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHH
Confidence 38999999998 78999999999994 444 7899999999987533 6789999999998 7888888
Q ss_pred cccc------ceEeccCC--CCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCC
Q 011746 279 NTSY------FSYCLPSP--YGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKL 349 (478)
Q Consensus 279 ~~~~------FS~cL~~~--~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~ 349 (478)
..+. ||+||.+. ....|.|+||++|+ ++.+++.|+|++.. ...+|.|.+++|.|++........ ..
T Consensus 129 ~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~---~~ 203 (283)
T cd05471 129 KSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSG---GG 203 (283)
T ss_pred HHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeecCC---Cc
Confidence 7643 99999985 34689999999998 68899999999875 367899999999999975111111 25
Q ss_pred ceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceEEE
Q 011746 350 SAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVV 429 (478)
Q Consensus 350 ~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 429 (478)
.++|||||++++||+++|++|.+++.+.+.. .+.|+...+.....+|+|+|+|
T Consensus 204 ~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~p~i~f~f---------------- 256 (283)
T cd05471 204 GAIVDSGTSLIYLPSSVYDAILKALGAAVSS-----------SDGGYGVDCSPCDTLPDITFTF---------------- 256 (283)
T ss_pred EEEEecCCCCEeCCHHHHHHHHHHhCCcccc-----------cCCcEEEeCcccCcCCCEEEEE----------------
Confidence 6999999999999999999999999887422 1236666666678899999999
Q ss_pred eCCCeEEEEEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEee
Q 011746 430 FSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGP 474 (478)
Q Consensus 430 ~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 474 (478)
.+|||++|||++|++||.++++||||+
T Consensus 257 ------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 689999999999999999999999986
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.4e-45 Score=367.31 Aligned_cols=294 Identities=29% Similarity=0.499 Sum_probs=241.8
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCC-CCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCC
Q 011746 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHC-SQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSS 206 (478)
Q Consensus 128 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C-~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 206 (478)
+|+++|.||||+|++.|++||||+.+||++..|..| .......|+|++|+|++.. +
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~--------------------~--- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQ--------------------G--- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEE--------------------E---
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccc--------------------e---
Confidence 699999999999999999999999999999999875 3334479999999998876 3
Q ss_pred CCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC---CCCcceEEecCCCC-------Ccccc
Q 011746 207 EECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD---QNGASGIMGLDRSP-------ISIIS 276 (478)
Q Consensus 207 ~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~---~~~~~GilGLg~~~-------~Sl~s 276 (478)
+.+.+.|++|+ ++|.+++|+|+|+ +.. +.++.||++....+. ....+||||||+.. .+++.
T Consensus 58 --~~~~~~y~~g~-~~G~~~~D~v~ig-~~~-----~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~ 128 (317)
T PF00026_consen 58 --KPFSISYGDGS-VSGNLVSDTVSIG-GLT-----IPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLD 128 (317)
T ss_dssp --EEEEEEETTEE-EEEEEEEEEEEET-TEE-----EEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHH
T ss_pred --eeeeeeccCcc-cccccccceEeee-ecc-----ccccceeccccccccccccccccccccccCCcccccccCCccee
Confidence 67999999996 9999999999994 444 889999999996543 26789999999753 35666
Q ss_pred cccccc------ceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCC
Q 011746 277 QTNTSY------FSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKL 349 (478)
Q Consensus 277 Ql~~~~------FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~ 349 (478)
|+..++ ||++|.+.....|.|+||++|+ ++.+++.|+|+.. ..+|.|.+.+|.+++........ .
T Consensus 129 ~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~~~----~ 200 (317)
T PF00026_consen 129 QLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSSSG----Q 200 (317)
T ss_dssp HHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEEEE----E
T ss_pred cchhhccccccccceeeeecccccchheeeccccccccCceeccCccc----ccccccccccccccccccccccc----e
Confidence 665553 9999998765689999999998 7889999999995 78899999999999993322221 2
Q ss_pred ceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceEEE
Q 011746 350 SAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVV 429 (478)
Q Consensus 350 ~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 429 (478)
.++||||+++++||.+++++|.+++...... + .|.++|.....+|.|+|+|. +.+++|++++|+.+
T Consensus 201 ~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-----~--------~~~~~c~~~~~~p~l~f~~~-~~~~~i~~~~~~~~ 266 (317)
T PF00026_consen 201 QAILDTGTSYIYLPRSIFDAIIKALGGSYSD-----G--------VYSVPCNSTDSLPDLTFTFG-GVTFTIPPSDYIFK 266 (317)
T ss_dssp EEEEETTBSSEEEEHHHHHHHHHHHTTEEEC-----S--------EEEEETTGGGGSEEEEEEET-TEEEEEEHHHHEEE
T ss_pred eeecccccccccccchhhHHHHhhhcccccc-----e--------eEEEecccccccceEEEeeC-CEEEEecchHhccc
Confidence 3999999999999999999999998876311 2 55555666678999999995 59999999999999
Q ss_pred eCC--CeEEE-EEEecC--CCCCeeeechhhhcceEEEEeCCCCEEEEeeC
Q 011746 430 FSV--SQVCL-AFAIFP--SDPNSISLGNVQQRGYEVHYDVAGRRLGFGPG 475 (478)
Q Consensus 430 ~~~--~~~Cl-~~~~~~--~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 475 (478)
... ...|. +|...+ .....+|||.+|||++|++||.+++|||||++
T Consensus 267 ~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 267 IEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp ESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 853 34896 676622 34468999999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=8.5e-33 Score=251.73 Aligned_cols=160 Identities=46% Similarity=0.851 Sum_probs=128.8
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCCCC
Q 011746 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEE 208 (478)
Q Consensus 129 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~~ 208 (478)
|+++|.||||+|++.|+|||||+++|++| .++.|+|++|+||+.++|+++.|..... . .....|.++.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~--~-~~~~~~~~~~ 68 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPS--F-CPCCCCSNNS 68 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTS--S-BTCCTCESSE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhccc--c-cccCCCCcCc
Confidence 89999999999999999999999999999 2379999999999999999999998762 0 0011223688
Q ss_pred CCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCCCCcceEEecCCCCCcccccc---ccccceE
Q 011746 209 CPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQT---NTSYFSY 285 (478)
Q Consensus 209 c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~Sl~sQl---~~~~FS~ 285 (478)
|.|.+.|+|++.+.|.+++|+|+|+... .+...+.++.|||++...+.+...+||||||++++||++|+ ....|||
T Consensus 69 C~y~~~y~~~s~~~G~l~~D~~~~~~~~-~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSy 147 (164)
T PF14543_consen 69 CPYSQSYGDGSSSSGFLASDTLTFGSSS-GGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSY 147 (164)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEEEES-SSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEE
T ss_pred ccceeecCCCccccCceEEEEEEecCCC-CCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEE
Confidence 9999999999999999999999996542 23355889999999999998889999999999999999999 4444999
Q ss_pred eccC-CCCCccEEEeCC
Q 011746 286 CLPS-PYGSTGYITFGR 301 (478)
Q Consensus 286 cL~~-~~~~~G~L~fG~ 301 (478)
||++ .....|+|+||+
T Consensus 148 CL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 148 CLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EB-S-SSSSEEEEEECS
T ss_pred ECCCCCCCCCEEEEeCc
Confidence 9999 556799999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=2.1e-28 Score=222.37 Aligned_cols=149 Identities=39% Similarity=0.666 Sum_probs=122.2
Q ss_pred cEEEEEeEEEECCeEeeeCcccc----cCCceEEeccCceeecCHHHHHHHHHHHHHHhhccc--c-CCCCCCCCcccce
Q 011746 324 YYDITITGISVGGEKLPFNSTYI----TKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYK--K-TKADDEDDFDTCY 396 (478)
Q Consensus 324 ~y~v~l~gi~vgg~~l~i~~~~~----~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~--~-~~~~~~~~~d~C~ 396 (478)
+|+|+|.+|+||++++++++..| ..+++||||||++|+||+++|++|+++|.+++.... + ... ...++.||
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~--~~~~~~Cy 78 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPP--FSGFDLCY 78 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE-----TT-S-EE
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhccccccccc--CCCCCcee
Confidence 59999999999999999999987 358999999999999999999999999999997642 2 333 67788999
Q ss_pred ecCC----CcccccCeEEEEEcCCcEEEecCCceEEEeCCCeEEEEEEec-CCCCCeeeechhhhcceEEEEeCCCCEEE
Q 011746 397 DLSA----YETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIF-PSDPNSISLGNVQQRGYEVHYDVAGRRLG 471 (478)
Q Consensus 397 ~~~~----~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~-~~~~~~~IlG~~fl~~~~vvfD~~~~rIG 471 (478)
+.+. .....+|+|+|+|.||++++|++++|++..+.+.+|++|.++ .+..+..|||+.+|++++++||++++|||
T Consensus 79 ~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 79 NLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp EGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred eccccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 9988 356899999999998899999999999999888999999988 33345899999999999999999999999
Q ss_pred Eee
Q 011746 472 FGP 474 (478)
Q Consensus 472 Fa~ 474 (478)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 997
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1e-22 Score=172.53 Aligned_cols=105 Identities=30% Similarity=0.526 Sum_probs=91.4
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCC-CCCCCCccccccCCChhhhhhhcCCCCCCCCCCCCCCC
Q 011746 131 IVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFF-DPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEEC 209 (478)
Q Consensus 131 ~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~f-dps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~~c 209 (478)
++|.||||+|++.|+|||||+++||+|++|..|..+..+.| +|++|++++.. . |
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~--------------------~-----~ 55 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDN--------------------G-----C 55 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCC--------------------C-----c
Confidence 47999999999999999999999999999988766655677 99999998765 3 8
Q ss_pred CceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC---CCcceEEec
Q 011746 210 PYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ---NGASGIMGL 267 (478)
Q Consensus 210 ~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGL 267 (478)
.|.+.|++| .+.|.+++|+|+|+ ... ++++.|||++...+.+ ...+|||||
T Consensus 56 ~~~~~Y~~g-~~~g~~~~D~v~ig-~~~-----~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 56 TFSITYGTG-SLSGGLSTDTVSIG-DIE-----VVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEEeCCC-eEEEEEEEEEEEEC-CEE-----ECCEEEEEEEecCCccccccccccccCC
Confidence 999999999 57899999999994 444 8999999999997753 578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.71 E-value=0.0001 Score=59.94 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=65.5
Q ss_pred eeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCC
Q 011746 127 DEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSS 206 (478)
Q Consensus 127 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~ 206 (478)
+.|++++.|+ ++++.+++|||++.+|+.-.-...+. . + . ...
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~-----~--~-----~---------------------~~~--- 42 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG-----L--P-----L---------------------TLG--- 42 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC-----C--C-----c---------------------cCC---
Confidence 3589999999 89999999999999998754211111 0 0 0 001
Q ss_pred CCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCCCCcceEEecCC
Q 011746 207 EECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDR 269 (478)
Q Consensus 207 ~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~ 269 (478)
....+...+|.........+.++++ ... ++++.+........ ..+||||+..
T Consensus 43 --~~~~~~~~~G~~~~~~~~~~~i~ig-~~~-----~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 43 --GKVTVQTANGRVRAARVRLDSLQIG-GIT-----LRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred --CcEEEEecCCCccceEEEcceEEEC-CcE-----EeccEEEEeCCccc---CCceEeChHH
Confidence 3566777788666677778999994 444 77888877766542 5899999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.82 E-value=0.076 Score=45.67 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNC 204 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 204 (478)
.++.|++++.|. ++++.+++|||++.+-+..+--..- -.++.. . .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L------gl~~~~------~--------------------~- 52 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL------GLDLNR------L--------------------G- 52 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc------CCCccc------C--------------------C-
Confidence 679999999998 7899999999999987754311000 011110 0 0
Q ss_pred CCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCCCCcceEEecCC
Q 011746 205 SSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDR 269 (478)
Q Consensus 205 ~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~ 269 (478)
-...+.=+.|......+.-|.++++ ... ++|+.+.+..... ..+|+||+.+
T Consensus 53 ----~~~~~~ta~G~~~~~~~~l~~l~iG-~~~-----~~nv~~~v~~~~~----~~~~LLGm~f 103 (121)
T TIGR02281 53 ----YTVTVSTANGQIKAARVTLDRVAIG-GIV-----VNDVDAMVAEGGA----LSESLLGMSF 103 (121)
T ss_pred ----ceEEEEeCCCcEEEEEEEeCEEEEC-CEE-----EeCcEEEEeCCCc----CCceEcCHHH
Confidence 1233333456444455678889994 445 7888887775432 1379999863
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.53 E-value=0.23 Score=39.42 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=52.0
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCCCCCC
Q 011746 131 IVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEECP 210 (478)
Q Consensus 131 ~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~~c~ 210 (478)
+++.|+ ++++.+++|||++.+.+.-.-.... ...+... . ..
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l------~~~~~~~--------------------------~-----~~ 41 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKL------GLKPRPK--------------------------S-----VP 41 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHc------CCCCcCC--------------------------c-----ee
Confidence 356777 7899999999999877753322110 0000000 0 12
Q ss_pred ceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCCCCcceEEecC
Q 011746 211 YNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLD 268 (478)
Q Consensus 211 ~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg 268 (478)
..+.-.+|.........+.++++ ... ++++.|-..... ...+||||+-
T Consensus 42 ~~~~~~~g~~~~~~~~~~~i~ig-~~~-----~~~~~~~v~~~~----~~~~~iLG~d 89 (90)
T PF13650_consen 42 ISVSGAGGSVTVYRGRVDSITIG-GIT-----LKNVPFLVVDLG----DPIDGILGMD 89 (90)
T ss_pred EEEEeCCCCEEEEEEEEEEEEEC-CEE-----EEeEEEEEECCC----CCCEEEeCCc
Confidence 33333445444555666789994 444 677777666622 3478999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.91 E-value=0.74 Score=39.61 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=22.7
Q ss_pred eeeechhhhcceEEEEeCCCCEEEE
Q 011746 448 SISLGNVQQRGYEVHYDVAGRRLGF 472 (478)
Q Consensus 448 ~~IlG~~fl~~~~vvfD~~~~rIGF 472 (478)
..|||..||+.+..+.|..+++|-|
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 5799999999999999999998854
No 31
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=92.14 E-value=3.1 Score=35.63 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=28.7
Q ss_pred CccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHH
Q 011746 322 SEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAAL 370 (478)
Q Consensus 322 ~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l 370 (478)
.+.|.++ +.|+|+++. ++||||.+.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~~----------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR----------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 4566655 678887542 99999999999999988776
No 32
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=90.78 E-value=1.6 Score=36.51 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.4
Q ss_pred eeeechhhhcceEEEEeCCCCEE
Q 011746 448 SISLGNVQQRGYEVHYDVAGRRL 470 (478)
Q Consensus 448 ~~IlG~~fl~~~~vvfD~~~~rI 470 (478)
..+||..||+.+-++.|..++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 67999999999999999987753
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.39 E-value=0.31 Score=39.35 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=25.5
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCC
Q 011746 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCKP 159 (478)
Q Consensus 129 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 159 (478)
|++++.|+ ++++.+++||||+.+++.-+.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57889999 899999999999999997653
No 34
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=88.16 E-value=3.1 Score=35.71 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=27.4
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCK 158 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 158 (478)
....+++++.|+ ++++.+++|||++.+++.-.
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 446789999999 89999999999999988544
No 35
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=84.81 E-value=3.2 Score=36.31 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=25.8
Q ss_pred eeeechhhhcceEEEEeCCCCEEEEeeC
Q 011746 448 SISLGNVQQRGYEVHYDVAGRRLGFGPG 475 (478)
Q Consensus 448 ~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 475 (478)
..|||..+|+.+...-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 5899999999999999999999999754
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.65 E-value=1.6 Score=33.65 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.4
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC 160 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C 160 (478)
..+.+++.+.|| ++.+.+++|||++...+...-+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 558899999999 7999999999999998876544
No 37
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=81.38 E-value=2.1 Score=34.88 Aligned_cols=28 Identities=39% Similarity=0.568 Sum_probs=23.4
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCCC
Q 011746 130 YIVVAIGEPKQYVSLLLDTGSDLTWTQCKP 159 (478)
Q Consensus 130 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 159 (478)
+++|.+. ++++.+++||||+.+-++.+.
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 4667777 789999999999999887654
No 38
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.33 E-value=2 Score=33.75 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=24.6
Q ss_pred EEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHH
Q 011746 332 ISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAAL 370 (478)
Q Consensus 332 i~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l 370 (478)
++|+|+++. ++||||.+.+.+.++.++++
T Consensus 3 v~vng~~~~----------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR----------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE----------EEEcCCCCcEEECHHHHHHc
Confidence 677887543 99999999999999998877
No 39
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=78.89 E-value=35 Score=30.86 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=32.8
Q ss_pred CCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHH
Q 011746 307 SKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAAL 370 (478)
Q Consensus 307 ~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l 370 (478)
...+...|++.+-..+..=.+-...+.+.|..+. ++||||++....-.+..+.|
T Consensus 14 ~~~~~~~PIV~~~~~Pevg~T~~v~l~~~~t~i~----------vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 14 KSSITTCPIVHYIAIPEVGKTAIVQLNCKGTPIK----------VLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred cceeeeeeeEEEeeccccCcEEEEEEeecCcEEE----------EEEeCCCccceeehhhHHhh
Confidence 3456666777632222222222233445555543 99999999999888888776
No 40
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=77.22 E-value=3.7 Score=32.93 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=26.0
Q ss_pred EEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHH
Q 011746 331 GISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAAL 370 (478)
Q Consensus 331 gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l 370 (478)
.+.|+|+.+. ..+|||++.+.++++.+.++
T Consensus 4 ~~~Ing~~i~----------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK----------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE----------EEEcCCcceEEeCHHHHHHh
Confidence 3678888764 89999999999999999876
No 41
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=76.55 E-value=14 Score=34.52 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=53.7
Q ss_pred eeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcC
Q 011746 116 QFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKL 195 (478)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~ 195 (478)
++.+... .+|.|.++..|- +|++.+++|||-+.+-+.-+.-. .--||.+..
T Consensus 95 ~v~Lak~--~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~------RlGid~~~l------------------- 145 (215)
T COG3577 95 EVSLAKS--RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR------RLGIDLNSL------------------- 145 (215)
T ss_pred EEEEEec--CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH------HhCCCcccc-------------------
Confidence 4444443 789999999998 99999999999998877654311 012333221
Q ss_pred CCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEcc
Q 011746 196 LPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQE 234 (478)
Q Consensus 196 ~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~ 234 (478)
+ -++.+.-++|.....-+-.|.|.|++
T Consensus 146 -------~-----y~~~v~TANG~~~AA~V~Ld~v~IG~ 172 (215)
T COG3577 146 -------D-----YTITVSTANGRARAAPVTLDRVQIGG 172 (215)
T ss_pred -------C-----CceEEEccCCccccceEEeeeEEEcc
Confidence 1 35666667886666677889999943
No 42
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=75.36 E-value=31 Score=35.21 Aligned_cols=54 Identities=26% Similarity=0.405 Sum_probs=31.8
Q ss_pred ecCCCCceeeEEEEEEEEEccCCCCCceeccceeee----------eeecCCC----CCCCcceEEecCCCC
Q 011746 214 AYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLG----------CTNNNTS----DQNGASGIMGLDRSP 271 (478)
Q Consensus 214 ~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FG----------c~~~~~g----~~~~~~GilGLg~~~ 271 (478)
.|++| ++-|-+.+-.|+|++... .. ++=+.++ |...... ...++.||||+|.-+
T Consensus 83 ~F~sg-ytWGsVr~AdV~igge~A-~~--iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 83 QFASG-YTWGSVRTADVTIGGETA-SS--IPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hccCc-ccccceEEEEEEEcCeec-cc--cCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 46676 788999999999966532 11 2222222 2222110 125789999999753
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=74.33 E-value=5.8 Score=30.45 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=25.1
Q ss_pred EEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHH
Q 011746 332 ISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAAL 370 (478)
Q Consensus 332 i~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l 370 (478)
+.|+|+.+. +++|||.+...++.+..+.|
T Consensus 13 ~~I~g~~~~----------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK----------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE----------EEEeCCCcceecCHHHHHHh
Confidence 667777653 99999999999999999887
No 44
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=72.22 E-value=7.5 Score=30.79 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=23.9
Q ss_pred EEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHH
Q 011746 332 ISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAAL 370 (478)
Q Consensus 332 i~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l 370 (478)
+.||++++. +++|||++.+.++.+..+.+
T Consensus 7 v~i~~~~~~----------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPVR----------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 677776653 99999999999999887765
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=70.07 E-value=5.7 Score=32.01 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.4
Q ss_pred EEEeCCCCcEEEEEEEcCCCceeeeCC
Q 011746 132 VVAIGEPKQYVSLLLDTGSDLTWTQCK 158 (478)
Q Consensus 132 ~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 158 (478)
++.|+ +|.+.+++|||+|++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999988754
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=67.15 E-value=6.5 Score=31.24 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=21.3
Q ss_pred EEEeCCCCcEEEEEEEcCCCceeeeCCC
Q 011746 132 VVAIGEPKQYVSLLLDTGSDLTWTQCKP 159 (478)
Q Consensus 132 ~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 159 (478)
.+.|. ++++.+++|||++.+-+.-..
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 899999999999999886543
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=66.29 E-value=8.7 Score=30.51 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.6
Q ss_pred EEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHH
Q 011746 332 ISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAAL 370 (478)
Q Consensus 332 i~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l 370 (478)
+.|||+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~----------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV----------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE----------EEEECCCCeEEECHHHhhhc
Confidence 567787654 89999999999999988775
No 48
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=63.10 E-value=24 Score=30.28 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.6
Q ss_pred eEEeccCc-eeecCHHHHHHH
Q 011746 351 AIIDSGNE-ITRLPSPIYAAL 370 (478)
Q Consensus 351 ~iiDSGT~-~t~lp~~~~~~l 370 (478)
.+||||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999999987
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=59.37 E-value=8.2 Score=31.27 Aligned_cols=27 Identities=19% Similarity=0.585 Sum_probs=21.5
Q ss_pred EEEECCeEeeeCcccccCCceEEeccCceeecCHHHH
Q 011746 331 GISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIY 367 (478)
Q Consensus 331 gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~ 367 (478)
.|.++|+.+. ++||||+..+.++.+.+
T Consensus 9 ~v~i~g~~i~----------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK----------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE----------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE----------EEEecCCCcceeccccc
Confidence 3677777654 99999999999997644
No 50
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=48.70 E-value=23 Score=28.71 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.0
Q ss_pred eEEeccCceeecCHHHHHHHH
Q 011746 351 AIIDSGNEITRLPSPIYAALR 371 (478)
Q Consensus 351 ~iiDSGT~~t~lp~~~~~~l~ 371 (478)
+.+|||.+...+|...|..+-
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 889999999999999888773
No 51
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=47.92 E-value=51 Score=30.94 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=29.8
Q ss_pred CccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHH
Q 011746 322 SEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAAL 370 (478)
Q Consensus 322 ~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l 370 (478)
.++|.++ ..|||+.+. .++|||.+.+.|+++..+.+
T Consensus 103 ~GHF~a~---~~VNGk~v~----------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD----------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE----------EEEecCcceeecCHHHHHHh
Confidence 5666665 679999875 89999999999999988766
No 52
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=47.57 E-value=14 Score=27.71 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=16.4
Q ss_pred CchhhHHHHHHHHHHHhhcCcc
Q 011746 1 MWILFKVFLLFIWLLCSSNNGA 22 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (478)
|||.|-..|.+++|.+....+.
T Consensus 1 MWIiiSIvLai~lLI~l~~ns~ 22 (66)
T PF07438_consen 1 MWIIISIVLAIALLISLSVNSE 22 (66)
T ss_pred ChhhHHHHHHHHHHHHHhhhHH
Confidence 9999988887777776555543
No 53
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=41.74 E-value=33 Score=29.54 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=23.7
Q ss_pred EEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHH
Q 011746 332 ISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAAL 370 (478)
Q Consensus 332 i~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l 370 (478)
+++||+.+. |.||||+..+.++.+..+++
T Consensus 29 ~~ing~~vk----------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK----------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE----------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE----------EEEeCCCCccccCHHHHHHc
Confidence 678998764 99999999999999999885
No 54
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=38.98 E-value=39 Score=30.59 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=22.4
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 011746 130 YIVVAIGEPKQYVSLLLDTGSDLTWTQCK 158 (478)
Q Consensus 130 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 158 (478)
...+.++.-+.++.++|||||....+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34455555689999999999999888653
No 55
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=30.18 E-value=3.7e+02 Score=27.57 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=59.6
Q ss_pred eEEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHH--HHHHHHHHhhccccCCCCCCCCcccceecCCCcccccC
Q 011746 330 TGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAA--LRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVP 407 (478)
Q Consensus 330 ~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P 407 (478)
.++.++|..+. |.||||+-++.+...-.+. |...+.....+-.+ .+|
T Consensus 238 iN~~ing~~VK----------AfVDsGaq~timS~~Caer~gL~rlid~r~~g~a~---------------------gvg 286 (380)
T KOG0012|consen 238 INCEINGVPVK----------AFVDSGAQTTIMSAACAERCGLNRLIDKRFQGEAR---------------------GVG 286 (380)
T ss_pred EEEEECCEEEE----------EEEcccchhhhhhHHHHHHhChHHHhhhhhhcccc---------------------CCC
Confidence 44678888764 9999999998887776655 22223322111111 111
Q ss_pred eEEEEEcC---CcEEEecCCceEEEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeC
Q 011746 408 KITFHFLG---GVDLELDVRGTLVVFSVSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPG 475 (478)
Q Consensus 408 ~i~~~f~g---g~~~~l~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 475 (478)
+..+.| -+.+.|.- .| ..|- .+.... .....||.-.||.+--.-|++++++-|+..
T Consensus 287 --~~ki~g~Ih~~~lki~~-~~-------l~c~ftV~d~~--~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 287 --TEKILGRIHQAQLKIED-LY-------LPCSFTVLDRR--DMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred --cccccceeEEEEEEecc-Ee-------eccceEEecCC--CcchhhhHHHHHhccceeecccCeEEecCC
Confidence 111111 02333322 22 2373 554332 225789999999999999999999887654
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=27.28 E-value=1e+02 Score=26.58 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=21.5
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQC 157 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c 157 (478)
.....++++.|+ ++++..++|||.-.+-+.-
T Consensus 21 ~v~mLyI~~~in--g~~vkA~VDtGAQ~tims~ 51 (124)
T PF09668_consen 21 QVSMLYINCKIN--GVPVKAFVDTGAQSTIMSK 51 (124)
T ss_dssp -----EEEEEET--TEEEEEEEETT-SS-EEEH
T ss_pred CcceEEEEEEEC--CEEEEEEEeCCCCccccCH
Confidence 446689999999 9999999999998877653
No 57
>PF10829 DUF2554: Protein of unknown function (DUF2554); InterPro: IPR020117 This entry contains proteins with no known function.
Probab=22.98 E-value=89 Score=23.99 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHhhcCccccCCCCceeeEEE
Q 011746 4 LFKVFLLFIWLLCSSNNGAYANDNDFTHSHIV 35 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (478)
|||+.+-+++|+|.+-.+..-...+.+.|..|
T Consensus 1 M~~k~lS~~lL~caLFSGqllA~~~GHe~~~v 32 (76)
T PF10829_consen 1 MFKKGLSALLLICALFSGQLLAGHQGHEYLWV 32 (76)
T ss_pred ChHHHHHHHHHHHHHhcchHHhccCCcceeee
Confidence 67777777767776665544433444444333
No 58
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=21.37 E-value=96 Score=18.86 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHhhc
Q 011746 3 ILFKVFLLFIWLLCSSN 19 (478)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (478)
-|+|++++.++.++.+.
T Consensus 5 ~mmKkil~~l~a~~~La 21 (25)
T PF08139_consen 5 SMMKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 36788888877666543
Done!