Query 011746
Match_columns 478
No_of_seqs 337 out of 1756
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 1.5E-63 5.1E-68 517.1 31.1 347 111-475 5-398 (413)
2 3aup_A SBG7S, BG, basic 7S glo 100.0 3.5E-59 1.2E-63 483.7 30.9 343 113-478 8-395 (403)
3 3psg_A Pepsinogen; hydrolase(a 100.0 6.8E-57 2.3E-61 461.2 29.0 305 115-476 46-370 (370)
4 1t6e_X Xylanase inhibitor; two 100.0 2.7E-56 9.2E-61 458.7 30.9 329 115-476 3-373 (381)
5 1mpp_A Pepsin; hydrolase(acid 100.0 6.3E-56 2.2E-60 452.8 27.4 311 114-478 7-357 (361)
6 3fv3_A SAPP1P-secreted asparti 100.0 9.3E-56 3.2E-60 447.7 26.7 300 115-478 3-331 (339)
7 1tzs_A Cathepsin E; hydrolase, 100.0 1.4E-55 4.7E-60 448.6 27.6 306 115-478 13-344 (351)
8 1j71_A Candidapepsin, aspartic 100.0 6.6E-56 2.3E-60 448.0 24.5 297 115-478 3-326 (334)
9 2apr_A Rhizopuspepsin; hydrola 100.0 1.1E-55 3.7E-60 444.8 24.9 294 125-476 13-324 (325)
10 1am5_A Pepsin, acid proteinase 100.0 3.3E-55 1.1E-59 441.1 28.3 300 116-476 3-324 (324)
11 3c9x_A Trichoderma reesei aspa 100.0 1.4E-55 4.8E-60 444.7 25.1 305 117-475 5-329 (329)
12 2qzx_A Candidapepsin-5; aspart 100.0 1.2E-55 4.1E-60 447.5 24.4 299 115-478 3-333 (342)
13 3cms_A Chymosin B; hydrolase, 100.0 1.7E-55 5.8E-60 443.0 24.8 300 116-476 5-323 (323)
14 1dpj_A Proteinase A; proteinas 100.0 5.3E-55 1.8E-59 440.5 28.3 302 115-476 3-329 (329)
15 1oew_A Endothiapepsin; hydrola 100.0 2.1E-55 7.3E-60 443.4 24.5 296 125-475 13-329 (329)
16 2x0b_A Renin; hydrolase-hormon 100.0 9.9E-56 3.4E-60 453.9 21.1 303 115-476 51-383 (383)
17 4aa9_A Chymosin; hydrolase, as 100.0 2.8E-55 9.6E-60 440.7 20.8 293 125-476 9-320 (320)
18 1htr_B Gastricsin; aspartyl pr 100.0 6.8E-55 2.3E-59 439.7 23.5 301 117-476 5-329 (329)
19 3pvk_A Candidapepsin-2; hydrol 100.0 1.7E-54 5.9E-59 438.8 23.9 300 115-478 3-333 (342)
20 2ewy_A Beta-secretase 2; BACE2 100.0 5.3E-54 1.8E-58 441.9 26.4 311 125-478 11-357 (383)
21 3k1w_A Renin; protease, altern 100.0 1E-54 3.6E-59 440.2 20.6 305 113-476 6-340 (341)
22 1miq_A Plasmepsin; aspartic pr 100.0 1.5E-54 5.2E-59 444.5 20.5 299 115-476 52-374 (375)
23 2qp8_A Beta-secretase 1; BACE1 100.0 6.7E-54 2.3E-58 443.0 24.7 310 125-478 19-369 (395)
24 2bju_A Plasmepsin II; aspartic 100.0 6.3E-54 2.2E-58 448.1 23.8 300 115-476 128-450 (453)
25 3vf3_A Beta-secretase 1; struc 100.0 3.9E-53 1.3E-57 438.2 26.9 312 125-478 26-376 (402)
26 1qdm_A Prophytepsin; aspartic 100.0 4E-53 1.4E-57 446.0 27.2 318 115-476 42-478 (478)
27 1ibq_A Aspergillopepsin; aspar 100.0 3.6E-53 1.2E-57 426.4 24.8 301 117-476 5-325 (325)
28 1izd_A Aspartic proteinase; su 100.0 1.7E-53 5.7E-58 428.5 21.2 293 125-476 13-323 (323)
29 3lpj_A Beta-secretase 1; alzhe 100.0 6E-53 2.1E-57 443.5 25.4 313 125-478 72-422 (455)
30 1yg9_A Aspartic protease BLA G 100.0 2.7E-53 9.1E-58 428.3 21.5 302 115-476 7-329 (330)
31 1bxo_A Protein (penicillopepsi 100.0 2.5E-53 8.7E-58 427.2 20.8 292 125-476 13-323 (323)
32 3qvc_A Histo-aspartic protease 100.0 6E-53 2E-57 441.1 23.8 299 115-476 127-449 (451)
33 1wkr_A Polyporopepsin; hydrola 100.0 3.4E-52 1.2E-56 421.8 25.7 297 115-478 3-335 (340)
34 1b5f_A Protein (cardosin A); h 100.0 2.1E-41 7.2E-46 326.1 16.4 218 116-376 4-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 6.4E-36 2.2E-40 288.0 18.2 215 241-476 3-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 2.5E-22 8.5E-27 165.3 9.3 89 116-234 4-96 (97)
37 1b5f_B Protein (cardosin A); h 99.6 5.6E-16 1.9E-20 124.7 8.2 74 402-476 9-87 (87)
38 2i1a_A DNA damage-inducible pr 88.2 2.2 7.5E-05 36.3 8.9 26 448-473 109-134 (148)
39 3s8i_A Protein DDI1 homolog 1; 87.4 1.8 6.1E-05 37.3 7.7 108 324-474 24-134 (148)
40 2hs1_A HIV-1 protease; ultra-h 82.5 1.5 5E-05 35.1 4.5 28 130-159 10-37 (99)
41 1fmb_A EIAV protease; hydrolas 82.3 1.3 4.3E-05 35.9 4.1 26 129-156 9-34 (104)
42 3ec0_A Protease; HIV-2, inhibi 78.4 2.5 8.5E-05 33.8 4.5 28 130-159 10-37 (99)
43 2i1a_A DNA damage-inducible pr 74.6 2.7 9.2E-05 35.7 4.1 30 125-156 23-52 (148)
44 3liy_A Protease; hydrolase, hy 72.4 3.1 0.00011 34.0 3.7 31 130-160 12-45 (116)
45 2hah_A Protease, retropepsin; 71.8 3.4 0.00012 34.0 3.8 24 133-158 18-41 (116)
46 3sqf_A Protease; folded monome 66.3 5.8 0.0002 32.4 4.1 29 130-160 11-39 (114)
47 3s8i_A Protein DDI1 homolog 1; 61.2 7.2 0.00025 33.4 4.0 31 125-157 21-51 (148)
48 1lya_A Cathepsin D; lysosomal 55.1 11 0.00038 29.6 3.8 40 313-365 5-44 (97)
49 2rsp_A RSV protease; hydrolase 51.7 14 0.00048 30.6 4.0 24 135-160 27-50 (124)
50 3slz_A GAG-Pro-POL polyprotein 51.5 17 0.00058 30.5 4.6 30 128-159 22-51 (132)
51 3ka2_A [L-Ala51;Gly51']HIV-1 p 50.0 13 0.00045 33.5 3.9 27 129-157 9-35 (203)
52 1bxo_A Protein (penicillopepsi 36.8 30 0.001 33.1 4.5 32 322-366 14-45 (323)
53 1mpp_A Pepsin; hydrolase(acid 33.7 53 0.0018 31.9 5.8 46 307-365 4-49 (361)
54 1izd_A Aspartic proteinase; su 32.3 38 0.0013 32.4 4.4 32 322-366 14-45 (323)
55 3cms_A Chymosin B; hydrolase, 31.4 37 0.0013 32.4 4.2 44 309-365 2-45 (323)
56 1ibq_A Aspergillopepsin; aspar 30.9 37 0.0013 32.5 4.0 33 322-367 13-45 (325)
57 3ka2_A [L-Ala51;Gly51']HIV-1 p 29.5 44 0.0015 30.1 3.9 28 129-158 113-140 (203)
58 3vla_A EDGP; extracellular, in 27.2 55 0.0019 32.7 4.7 45 309-365 7-51 (413)
59 1b5f_A Protein (cardosin A); h 24.6 48 0.0016 30.2 3.4 40 313-365 5-44 (239)
60 3aup_A SBG7S, BG, basic 7S glo 24.1 53 0.0018 32.5 3.9 42 312-365 11-52 (403)
61 1am5_A Pepsin, acid proteinase 20.9 75 0.0026 30.2 4.1 40 313-365 4-43 (324)
62 1oew_A Endothiapepsin; hydrola 20.8 75 0.0026 30.3 4.1 33 322-365 14-46 (329)
63 1wkr_A Polyporopepsin; hydrola 20.3 1.1E+02 0.0038 29.2 5.2 39 313-365 5-43 (340)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=1.5e-63 Score=517.15 Aligned_cols=347 Identities=23% Similarity=0.401 Sum_probs=288.8
Q ss_pred CCcceeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhh
Q 011746 111 KSKSFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCR 190 (478)
Q Consensus 111 ~~~~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~ 190 (478)
..+.+.+|++... .+++|+++|+||||+|++.|+|||||+++||+|++| .+|+||+.++|+++.|.
T Consensus 5 ~~~~~~~pv~~d~-~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~ 70 (413)
T 3vla_A 5 RPSALVVPVKKDA-STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCS 70 (413)
T ss_dssp CCSEEEEEEEECT-TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHH
T ss_pred CCccEEEEeeecC-CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCccccc
Confidence 4567889998742 789999999999999999999999999999999976 37999999999999999
Q ss_pred hhhcCCCCC------CCCCCCCCCCCceeec-CCCCceeeEEEEEEEEEccCCCC---CceeccceeeeeeecC--CCCC
Q 011746 191 ILRKLLPPN------GQDNCSSEECPYNIAY-ADNSSDGGFWAADRITIQEANRD---GYFSWYPFLLGCTNNN--TSDQ 258 (478)
Q Consensus 191 ~~~~~~~~~------~~~~C~~~~c~~~~~Y-gdgs~~~G~~~~Dtltl~~~~~~---~~~~~~~~~FGc~~~~--~g~~ 258 (478)
.... +.. ...+|.++.|.|.+.| +||+.+.|++++|+|+|+....+ ..+.++++.|||++.. .+.+
T Consensus 71 ~~~~--~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~ 148 (413)
T 3vla_A 71 LSGS--IACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLA 148 (413)
T ss_dssp HTTC--CEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSC
T ss_pred cccc--CCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcc
Confidence 8652 100 1135666679999999 58889999999999999532111 1356899999999986 4566
Q ss_pred CCcceEEecCCCCCccccccccc-----cceEeccCCCCCccEEEeCCCCC-c-----CCCC-ceEeeceeCCCC-----
Q 011746 259 NGASGIMGLDRSPISIISQTNTS-----YFSYCLPSPYGSTGYITFGRPDA-V-----NSKF-IKYTPIITTPEQ----- 321 (478)
Q Consensus 259 ~~~~GilGLg~~~~Sl~sQl~~~-----~FS~cL~~~~~~~G~L~fG~~d~-~-----~~~~-~~~tpl~~~~~~----- 321 (478)
..++||||||++++|+++|+..+ .|||||++.....|.|+||+.|. . +.++ +.||||+.++..
T Consensus 149 ~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~ 228 (413)
T 3vla_A 149 SGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATS 228 (413)
T ss_dssp TTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSC
T ss_pred cccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccc
Confidence 78999999999999999998863 29999998655689999999875 2 4667 999999987533
Q ss_pred -----CccEEEEEeEEEECCeEeeeCccccc-----CCceEEeccCceeecCHHHHHHHHHHHHHHhh--ccccCCCCCC
Q 011746 322 -----SEYYDITITGISVGGEKLPFNSTYIT-----KLSAIIDSGNEITRLPSPIYAALRSAFRKRMM--KYKKTKADDE 389 (478)
Q Consensus 322 -----~~~y~v~l~gi~vgg~~l~i~~~~~~-----~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~--~~~~~~~~~~ 389 (478)
+.+|+|+|++|+||++.+.+++..|. .+++||||||++|+||+++|++|+++|.+++. ++++..+ .
T Consensus 229 ~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~--~ 306 (413)
T 3vla_A 229 TQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVAS--V 306 (413)
T ss_dssp CTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECC--C
T ss_pred cccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCC--C
Confidence 27999999999999999998877664 36899999999999999999999999999875 4554444 4
Q ss_pred CCcccceecCCCcc----cccCeEEEEEcC-CcEEEecCCceEEEeCCCeEEEEEEecCCC-CCeeeechhhhcceEEEE
Q 011746 390 DDFDTCYDLSAYET----VVVPKITFHFLG-GVDLELDVRGTLVVFSVSQVCLAFAIFPSD-PNSISLGNVQQRGYEVHY 463 (478)
Q Consensus 390 ~~~d~C~~~~~~~~----~~~P~i~~~f~g-g~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~vvf 463 (478)
..++.||+.++... ..+|+|+|+|+| +++++|++++|+++.+.+..|++|...+.. .+.||||++|||++|+||
T Consensus 307 ~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvf 386 (413)
T 3vla_A 307 APFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQF 386 (413)
T ss_dssp TTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEE
T ss_pred CCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEE
Confidence 55778999876532 589999999977 589999999999987667899998876432 357999999999999999
Q ss_pred eCCCCEEEEeeC
Q 011746 464 DVAGRRLGFGPG 475 (478)
Q Consensus 464 D~~~~rIGFa~~ 475 (478)
|++++|||||++
T Consensus 387 D~~~~riGfa~~ 398 (413)
T 3vla_A 387 DLATSRVGFSGT 398 (413)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCCEEEEEEe
Confidence 999999999985
No 2
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=3.5e-59 Score=483.68 Aligned_cols=343 Identities=20% Similarity=0.343 Sum_probs=273.4
Q ss_pred cceeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhh
Q 011746 113 KSFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRIL 192 (478)
Q Consensus 113 ~~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (478)
+.+.+|+... ..+++|+++|.||||+|++.|+|||||+++||+|.+| .+|+||+.++|.++.|...
T Consensus 8 ~~~~~pl~~~-~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~-------------~~Sst~~~~~C~s~~C~~~ 73 (403)
T 3aup_A 8 NLVVLPVQND-GSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ-------------YSSKTYQAPFCHSTQCSRA 73 (403)
T ss_dssp CCEEEEEEEC-TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC-------------CCCSSCBCCCTTBHHHHHT
T ss_pred ccEEEeeecC-CCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC-------------CCCCCCCccCCCCccccCc
Confidence 3467888852 2678999999999999999999999999999999875 4799999999999999986
Q ss_pred hcCCC------CCCCCCCCCCCCCceeecC-CCCceeeEEEEEEEEEccCCC-----CCceeccceeeeeeecCC---CC
Q 011746 193 RKLLP------PNGQDNCSSEECPYNIAYA-DNSSDGGFWAADRITIQEANR-----DGYFSWYPFLLGCTNNNT---SD 257 (478)
Q Consensus 193 ~~~~~------~~~~~~C~~~~c~~~~~Yg-dgs~~~G~~~~Dtltl~~~~~-----~~~~~~~~~~FGc~~~~~---g~ 257 (478)
.. + .....+|.+..|.|.+.|+ ||+.+.|.+++|+|+|++... ...+.++++.|||++... +.
T Consensus 74 ~~--~~c~~c~~~~~s~~~~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~ 151 (403)
T 3aup_A 74 NT--HQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGL 151 (403)
T ss_dssp TC--CCEEECSSSCBTTBCSSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSS
T ss_pred cc--cCccccCCCCCCCCCCCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCC
Confidence 52 2 1112346666799999998 788999999999999965210 011558999999999863 33
Q ss_pred CCCcceEEecCCCCCcccccccccc-----ceEeccCCCCCccEEEeCCCCC-cC--C-C-----CceEeeceeCCCCCc
Q 011746 258 QNGASGIMGLDRSPISIISQTNTSY-----FSYCLPSPYGSTGYITFGRPDA-VN--S-K-----FIKYTPIITTPEQSE 323 (478)
Q Consensus 258 ~~~~~GilGLg~~~~Sl~sQl~~~~-----FS~cL~~~~~~~G~L~fG~~d~-~~--~-~-----~~~~tpl~~~~~~~~ 323 (478)
+..++||||||++++|+++|+.... ||+||++.....|.|+||+ |+ ++ . | ++.|+|++.++ ..
T Consensus 152 ~~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~--~~ 228 (403)
T 3aup_A 152 PRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITL--QG 228 (403)
T ss_dssp STTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECT--TS
T ss_pred CCCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeecccccCC--CC
Confidence 4678999999999999999986532 9999998655689999999 87 55 3 4 99999999864 36
Q ss_pred cEEEEEeEEEECCeEe-eeCccccc-----CCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCccccee
Q 011746 324 YYDITITGISVGGEKL-PFNSTYIT-----KLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYD 397 (478)
Q Consensus 324 ~y~v~l~gi~vgg~~l-~i~~~~~~-----~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~ 397 (478)
+|.|+|++|+||++.+ .+++..+. .+++||||||++++||+++|++|+++|.+++..++.... ...++.||+
T Consensus 229 ~y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~c~~ 306 (403)
T 3aup_A 229 EYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKS--VAPFGLCFN 306 (403)
T ss_dssp CEEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECC--CTTCSCEEC
T ss_pred cceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCC--CCCCCceEE
Confidence 9999999999999998 77665552 357999999999999999999999999887755544333 234456875
Q ss_pred cCCCcccccCeEEEEEcCC--cEEEecCCceEEEeCCCeEEEEEEecCCC-CCeeeechhhhcceEEEEeCCCCEEEE--
Q 011746 398 LSAYETVVVPKITFHFLGG--VDLELDVRGTLVVFSVSQVCLAFAIFPSD-PNSISLGNVQQRGYEVHYDVAGRRLGF-- 472 (478)
Q Consensus 398 ~~~~~~~~~P~i~~~f~gg--~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~vvfD~~~~rIGF-- 472 (478)
.+ ....+|+|+|+|+|+ ++++|++++|+++...+..|++|...+.. .+.||||++|||++|+|||++++||||
T Consensus 307 c~--~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A 384 (403)
T 3aup_A 307 SN--KINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFST 384 (403)
T ss_dssp GG--GCCCCCCEEEEESSTTCCEEEECHHHHEEEC---CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEEEEES
T ss_pred CC--CcCcCCcEEEEEcCCCceEEEEcccceEEEcCCCeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEEEEec
Confidence 43 334799999999876 69999999999987656789999876532 347999999999999999999999999
Q ss_pred -----eeCCCC
Q 011746 473 -----GPGNCS 478 (478)
Q Consensus 473 -----a~~~C~ 478 (478)
++++|+
T Consensus 385 ~~~~~~~~~C~ 395 (403)
T 3aup_A 385 SSLHSHGVKCA 395 (403)
T ss_dssp SCGGGGTCCGG
T ss_pred ccccccCCCcc
Confidence 777774
No 3
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=6.8e-57 Score=461.17 Aligned_cols=305 Identities=23% Similarity=0.360 Sum_probs=247.5
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhc
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRK 194 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~ 194 (478)
...|+.. ..+.+|+++|+||||+|++.|+|||||+++||+|..|..|..+.++.|||++|+||+..
T Consensus 46 ~~~~l~n--~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~------------ 111 (370)
T 3psg_A 46 GDEPLEN--YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT------------ 111 (370)
T ss_dssp CCCTTGG--GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEE------------
T ss_pred ceeccee--ccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEEC------------
Confidence 3455543 26889999999999999999999999999999999998633334589999999999987
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCCCC
Q 011746 195 LLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRSP 271 (478)
Q Consensus 195 ~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~ 271 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. ++++.|||++...+. | ..++||||||++.
T Consensus 112 --------~-----~~~~i~Yg~Gs-~~G~~~~Dtv~ig-~~~-----v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~ 171 (370)
T 3psg_A 112 --------S-----QELSITYGTGS-MTGILGYDTVQVG-GIS-----DTNQIFGLSETEPGSFLYYAPFDGILGLAYPS 171 (370)
T ss_dssp --------E-----EEEEEESSSCE-EEEEEEEEEEEET-TEE-----EEEEEEEEECSCCCGGGGGCSCSEEEECSCGG
T ss_pred --------C-----cEEEEEeCCce-EEEEEEEEEEeeC-Ccc-----cCCeEEEEEEeecccccccCCccceeccCCcc
Confidence 3 78999999995 8999999999994 445 899999999988763 3 5789999999987
Q ss_pred Ccc------ccccccc------cceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeE
Q 011746 272 ISI------ISQTNTS------YFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEK 338 (478)
Q Consensus 272 ~Sl------~sQl~~~------~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~ 338 (478)
++. +.++..+ .||+||.+.....|.|+|||+|+ ++.+++.|+|+.. ..+|.|.+++|+||++.
T Consensus 172 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~~----~~~w~v~l~~i~v~g~~ 247 (370)
T 3psg_A 172 ISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGET 247 (370)
T ss_dssp GCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSE
T ss_pred ccccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeecccc----cceeEEEEeEEEECCEE
Confidence 653 3333332 29999998755689999999998 8999999999987 67999999999999988
Q ss_pred eeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcE
Q 011746 339 LPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVD 418 (478)
Q Consensus 339 l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~ 418 (478)
+..... ..+||||||+++++|++++++|.+++.+. ....+ +|.++|.....+|+|+|+| ||++
T Consensus 248 ~~~~~~----~~aiiDTGTs~~~lP~~~~~~i~~~i~a~----~~~~g--------~~~v~C~~~~~lP~i~f~~-~g~~ 310 (370)
T 3psg_A 248 IACSGG----CQAIVDTGTSLLTGPTSAIANIQSDIGAS----ENSDG--------EMVISCSSIDSLPDIVFTI-DGVQ 310 (370)
T ss_dssp EECTTC----EEEEECTTCCSEEEEHHHHHHHHHHTTCE----ECTTC--------CEECCGGGGGGCCCEEEEE-TTEE
T ss_pred EecCCC----ceEEEcCCCCcEECCHHHHHHHHHHhCCc----ccCCC--------cEEEECCCcccCCcEEEEE-CCEE
Confidence 764322 46999999999999999999999888653 12223 3444444557899999999 5599
Q ss_pred EEecCCceEEEeCCCeEEE-EEEecCC---CCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 419 LELDVRGTLVVFSVSQVCL-AFAIFPS---DPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 419 ~~l~~~~~~~~~~~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
++|++++|+++. ...|+ +|...+. .++.||||++|||++|+|||.+++|||||+++
T Consensus 311 ~~l~~~~yi~~~--~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 311 YPLSPSAYILQD--DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp EEECHHHHEEEC--SSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EEECHHHhcccC--CCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 999999999983 45698 6776532 23379999999999999999999999999975
No 4
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=2.7e-56 Score=458.73 Aligned_cols=329 Identities=23% Similarity=0.439 Sum_probs=262.3
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhc
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRK 194 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~ 194 (478)
+.+|+... ..+.+|+++|+|||| |+|||||+++||+|.+|. +|+.++|+++.|.....
T Consensus 3 ~~~pv~~~-~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~----------------~~~~~~C~s~~C~~~~~ 60 (381)
T 1t6e_X 3 VLAPVTKD-PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ----------------PPAEIPCSSPTCLLANA 60 (381)
T ss_dssp EEEEEEEC-TTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTC----------------CCCCCBTTSHHHHHHHS
T ss_pred eEEeEEec-CCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCC----------------CCCccCCCCchhccccC
Confidence 45677641 278999999999998 999999999999998751 36678999999987542
Q ss_pred CCCCCCCCCCC---------CCCC-CceeecCCCCceeeEEEEEEEEEccCCCCCceeccce----eeeeeecC--CCCC
Q 011746 195 LLPPNGQDNCS---------SEEC-PYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPF----LLGCTNNN--TSDQ 258 (478)
Q Consensus 195 ~~~~~~~~~C~---------~~~c-~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~----~FGc~~~~--~g~~ 258 (478)
+ +...|+ +..| .|.+.|+||+.+.|++++|+|+|++. ++...++++ .|||++.+ .+.+
T Consensus 61 --~--~~~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~--~g~~~v~~~~~~~~Fg~~~~~~~~~~~ 134 (381)
T 1t6e_X 61 --Y--PAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTT--DGSKPVSKVNVGVLAACAPSKLLASLP 134 (381)
T ss_dssp --S--CCTTCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEE--SSSSEEEEEEEEEEEEECCGGGGTTSC
T ss_pred --C--CCCCCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeecc--CCCccccceeeeeEeecCcccccCCCC
Confidence 1 122454 2357 59999999988899999999999642 111225554 67999876 4445
Q ss_pred CCcceEEecCCCCCccccccccc----c-ceEeccCCCCCccEEEeCCCCCc---CCCCceEeeceeCCCCCccEEEEEe
Q 011746 259 NGASGIMGLDRSPISIISQTNTS----Y-FSYCLPSPYGSTGYITFGRPDAV---NSKFIKYTPIITTPEQSEYYDITIT 330 (478)
Q Consensus 259 ~~~~GilGLg~~~~Sl~sQl~~~----~-FS~cL~~~~~~~G~L~fG~~d~~---~~~~~~~tpl~~~~~~~~~y~v~l~ 330 (478)
..++||||||++++|+++|+..+ . ||+||++. ..|.|+||+.+.. +.+++.|+|++.++..+ +|.|+|+
T Consensus 135 ~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~--~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~-~y~v~l~ 211 (381)
T 1t6e_X 135 RGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTG--GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSP-AHYISAR 211 (381)
T ss_dssp TTEEEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSS--SCEEEEESCCSCSCHHHHTTCCEEECBCCTTCC-SCEECEE
T ss_pred CCCceEEEeCCCcchhHHHHhhhcccCceEEEEeCCC--CCeeEEeCCcccccccccCcceeeccccCCCCc-ceEEEEE
Confidence 78999999999999999998754 2 99999875 6799999997642 57899999999865433 5669999
Q ss_pred EEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhh-------ccccC-CCCCCCCcccceecCCCc
Q 011746 331 GISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMM-------KYKKT-KADDEDDFDTCYDLSAYE 402 (478)
Q Consensus 331 gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~-------~~~~~-~~~~~~~~d~C~~~~~~~ 402 (478)
+|+||++.+.++...|..+++||||||++++||+++|++|+++|.+++. .+++. .. ...++.||+.++..
T Consensus 212 ~i~vg~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~C~~~~~~~ 289 (381)
T 1t6e_X 212 SIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEA--VAPFGVCYDTKTLG 289 (381)
T ss_dssp EEEETTEECCCCTTCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECC--CTTCSCEEEGGGCC
T ss_pred EEEEcCEEecCCHHHccCCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCC--CCCCCccCCCCCCc
Confidence 9999999998887767557899999999999999999999999999874 24332 22 33456799876542
Q ss_pred ----ccccCeEEEEEcCCcEEEecCCceEEEeCCCeEEEEEEecCC------CCCeeeechhhhcceEEEEeCCCCEEEE
Q 011746 403 ----TVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFPS------DPNSISLGNVQQRGYEVHYDVAGRRLGF 472 (478)
Q Consensus 403 ----~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~~~------~~~~~IlG~~fl~~~~vvfD~~~~rIGF 472 (478)
...+|+|+|+|+||++++|++++|+++...+..|++|..... ..+.||||++|||++|+|||++++||||
T Consensus 290 ~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGf 369 (381)
T 1t6e_X 290 NNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369 (381)
T ss_dssp EETTEECCCCEEEEETTSCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEE
T ss_pred ccccCCcCCeEEEEECCCcEEEeCCCeEEEEcCCCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEE
Confidence 247999999998779999999999998766789999887653 1247999999999999999999999999
Q ss_pred eeCC
Q 011746 473 GPGN 476 (478)
Q Consensus 473 a~~~ 476 (478)
|++.
T Consensus 370 A~~~ 373 (381)
T 1t6e_X 370 SRLP 373 (381)
T ss_dssp EECC
T ss_pred eccc
Confidence 9864
No 5
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=6.3e-56 Score=452.78 Aligned_cols=311 Identities=23% Similarity=0.340 Sum_probs=256.9
Q ss_pred ceeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC---CCCCCCCCCCCCCCCCccccccCCChhhh
Q 011746 114 SFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI---HCSQQRDPFFDPSKSKTFSKIPCNSASCR 190 (478)
Q Consensus 114 ~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~ 190 (478)
...+|+... .+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 7 ~~~~~l~~~--~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~-------- 74 (361)
T 1mpp_A 7 VDTPGLYDF--DLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGK--RFFDPSSSSTFKET-------- 74 (361)
T ss_dssp EEEEEEEET--TTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSS--CCBCGGGCTTCEEE--------
T ss_pred cceEEeecC--CCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCC--CcCCCccCCceEec--------
Confidence 345677652 6789999999999999999999999999999999998 59764 79999999999887
Q ss_pred hhhcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCC------CC--CCcc
Q 011746 191 ILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTS------DQ--NGAS 262 (478)
Q Consensus 191 ~~~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g------~~--~~~~ 262 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. ++++.|||++...+ .| ...+
T Consensus 75 ------------~-----~~~~i~Yg~Gs-~~G~~~~D~v~~g-~~~-----v~~~~fg~~~~~~~~~~~~~~~~~~~~~ 130 (361)
T 1mpp_A 75 ------------D-----YNLNITYGTGG-ANGIYFRDSITVG-GAT-----VKQQTLAYVDNVSGPTAEQSPDSELFLD 130 (361)
T ss_dssp ------------E-----EEEEEECSSCE-EEEEEEEEEEEET-TEE-----EEEEEEEEEEEEESGGGSSCTTCSSCCC
T ss_pred ------------C-----CeEEEEECCce-EEEEEEEEEEEEC-CEE-----EeceEEEEEEeccCccccccccccCCCC
Confidence 3 78999999996 8999999999995 445 89999999998765 33 5789
Q ss_pred eEEecCCCCCccc------------cccccc------cceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCc
Q 011746 263 GIMGLDRSPISII------------SQTNTS------YFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSE 323 (478)
Q Consensus 263 GilGLg~~~~Sl~------------sQl~~~------~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~ 323 (478)
||||||+..++.. .|+..+ .||+||.+. ...|.|+||++|+ ++.+++.|+|+......+.
T Consensus 131 GilGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~ 209 (361)
T 1mpp_A 131 GIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN-DGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYF 209 (361)
T ss_dssp EEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS-SSEEEEEESSCCGGGBSSCCEEEECEEETTEEE
T ss_pred CEEEeCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCC-CCCcEEEEecCChhhcCCceEEEEcccCCCcee
Confidence 9999999876543 233332 299999986 4589999999998 8899999999998543233
Q ss_pred cEEEEEeEEEECCeEeeeCcccccCCceE-EeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCc
Q 011746 324 YYDITITGISVGGEKLPFNSTYITKLSAI-IDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYE 402 (478)
Q Consensus 324 ~y~v~l~gi~vgg~~l~i~~~~~~~~~~i-iDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~ 402 (478)
+|.|.|++|+|+++.+..+.. .++| |||||++++||+++|++|.+++.+. ++...+ .+.+ +|+.
T Consensus 210 ~~~v~l~~i~v~~~~~~~~~~----~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~---~~~~~g--~~~~-~C~~----- 274 (361)
T 1mpp_A 210 FWDAPVTGVKIDGSDAVSFDG----AQAFTIDTGTNFFIAPSSFAEKVVKAALPD---ATESQQ--GYTV-PCSK----- 274 (361)
T ss_dssp EEEEEEEEEEETTEEEEEEEE----EEEEEEETTCCSEEEEHHHHHHHHHHHCTT---CEEETT--EEEE-EHHH-----
T ss_pred EEEEEEeEEEECCeeeccCCC----CEEEEECCCCCceeCCHHHHHHHHHHhCCc---ccCCCC--cEEE-ECCC-----
Confidence 899999999999988753322 4599 9999999999999999999998764 333333 3334 4863
Q ss_pred cccc-CeEEEEEc-C-----CcEEEecCCceEEEeC-CCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEe
Q 011746 403 TVVV-PKITFHFL-G-----GVDLELDVRGTLVVFS-VSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFG 473 (478)
Q Consensus 403 ~~~~-P~i~~~f~-g-----g~~~~l~~~~~~~~~~-~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa 473 (478)
...+ |+|+|+|. | |++++|++++|+++.. +...|+ +|.+.. .+.||||++|||++|+|||++++|||||
T Consensus 275 ~~~~~p~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~~--~~~~iLG~~fl~~~yvvfD~~~~~igfa 352 (361)
T 1mpp_A 275 YQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDG--GNQFIVGNLFLRFFVNVYDFGKNRIGFA 352 (361)
T ss_dssp HTTCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEES--SSCCEEEHHHHTTEEEEEETTTTEEEEE
T ss_pred cccCCCcEEEEEEcCCcCCCCeEEEECHHHhEEecCCCCCeeEEEEEeCC--CCCEEEChHHhccEEEEEECCCCEEEEE
Confidence 3467 99999993 3 6999999999999875 456897 888762 3479999999999999999999999999
Q ss_pred eCCCC
Q 011746 474 PGNCS 478 (478)
Q Consensus 474 ~~~C~ 478 (478)
+++|+
T Consensus 353 ~~~~~ 357 (361)
T 1mpp_A 353 PLASG 357 (361)
T ss_dssp EBCTT
T ss_pred EcccC
Confidence 99995
No 6
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=9.3e-56 Score=447.66 Aligned_cols=300 Identities=21% Similarity=0.360 Sum_probs=253.5
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeee-----CCCCCCCCCCCCCCCCCCCCCccccccCCChhh
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQ-----CKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASC 189 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~-----c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C 189 (478)
+++|+.. ++.+|+++|.||||+|++.|+|||||+++||+ |.+|..|..+ +.|||++|+||+..
T Consensus 3 i~~~l~~---~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~--~~y~~~~SsT~~~~------- 70 (339)
T 3fv3_A 3 ISLSLIN---EGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSS--GTFTPSSSSSYKNL------- 70 (339)
T ss_dssp EEEEEEE---CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTT--CCBCGGGCTTCEEE-------
T ss_pred eeeEEEc---CCCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCC--CcCCCccCcceeeC-------
Confidence 6778877 67899999999999999999999999999998 7777778754 79999999999987
Q ss_pred hhhhcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCCCCcceEEecCC
Q 011746 190 RILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDR 269 (478)
Q Consensus 190 ~~~~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~ 269 (478)
+ |.|.+.|++|+.+.|.+++|+|+|+ +.. ++++.|||++...+ .+||||||+
T Consensus 71 -------------~-----~~~~i~Yg~gs~~~G~~~~D~v~~g-~~~-----v~~~~fg~~~~~~~----~~GilGLg~ 122 (339)
T 3fv3_A 71 -------------G-----AAFTIRYGDGSTSQGTWGKDTVTIN-GVS-----ITGQQIADVTQTSV----DQGILGIGY 122 (339)
T ss_dssp -------------E-----EEEEEECTTSCEEEEEEEEEEEEET-TEE-----EEEEEEEEEEEESS----SSCEEECSC
T ss_pred -------------C-----ceEEEEECCCceEEEEEEEEEEEEC-CEE-----ECceEEEEEEecCC----CceeEEecC
Confidence 3 7899999999999999999999995 445 89999999998765 699999999
Q ss_pred CCCc----------------ccccccccc------ceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEE
Q 011746 270 SPIS----------------IISQTNTSY------FSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYD 326 (478)
Q Consensus 270 ~~~S----------------l~sQl~~~~------FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~ 326 (478)
...+ ++.|+..+. ||+||.+.....|.|+|||+|+ ++.+++.|+|+.. ..+|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~ 198 (339)
T 3fv3_A 123 TSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTS----SQALT 198 (339)
T ss_dssp GGGCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEEBCC----SSSCE
T ss_pred ccccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecceEEEeccc----CccEE
Confidence 8754 455565442 9999998766689999999998 8899999999987 56899
Q ss_pred EEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCccccc
Q 011746 327 ITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVV 406 (478)
Q Consensus 327 v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~ 406 (478)
|++++|+|+++.+... .++||||||++++||+++|++|.+++.+.....+...+ .+.+ +|+. ..+
T Consensus 199 v~l~~i~v~g~~~~~~------~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~--~~~~-~C~~------~~~ 263 (339)
T 3fv3_A 199 ISLASVNLKGSSFSFG------DGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQY--LYFI-DCNT------DTS 263 (339)
T ss_dssp EEEEEEEESSCEEEEE------EEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTEE--EEEE-CTTC------CCC
T ss_pred EEEEEEEECCEeecCC------ccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccCc--eEEE-ecCC------CCC
Confidence 9999999999987643 35999999999999999999999999865321111222 3334 3752 468
Q ss_pred CeEEEEEcCCcEEEecCCceEEEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 407 PKITFHFLGGVDLELDVRGTLVVFSVSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 407 P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
|+|+|+|.+|++++|++++|+++.+ ...|+ +|.+ . +.||||++|||++|+|||++++|||||+++|+
T Consensus 264 p~i~f~f~~g~~~~v~~~~~~~~~~-~~~C~~~i~~--~--~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 331 (339)
T 3fv3_A 264 GTTVFNFGNGAKITVPNTEYVYQNG-DGTCLWGIQP--S--DDTILGDNFLRHAYLLYNLDANTISIAQVKYT 331 (339)
T ss_dssp SEEEEEETTSCEEEEEGGGGEEECS-SSCEEESEEE--C--SSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred CcEEEEECCCCEEEECHHHheeeCC-CCeEEEEEEe--C--CcEEeChHHHhCEEEEEECCCCEEEEEecCCC
Confidence 9999999767999999999999864 45685 7776 2 37999999999999999999999999999995
No 7
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-55 Score=448.64 Aligned_cols=306 Identities=24% Similarity=0.378 Sum_probs=248.4
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC--CCCCCCCCCCCCCCCCccccccCCChhhhhh
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI--HCSQQRDPFFDPSKSKTFSKIPCNSASCRIL 192 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (478)
..+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 13 ~~~~l~n--~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~---------- 78 (351)
T 1tzs_A 13 AKEPLIN--YLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTH--SRFQPSQSSTYSQP---------- 78 (351)
T ss_dssp -CCTTGG--GSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTS--CCBCGGGCTTCBCC----------
T ss_pred cceecee--cCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCC--CcCCcccCcceEEC----------
Confidence 3456553 26789999999999999999999999999999999998 48754 79999999999876
Q ss_pred hcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCC
Q 011746 193 RKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDR 269 (478)
Q Consensus 193 ~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~ 269 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. ++++.|||++...+. | ..++||||||+
T Consensus 79 ----------~-----~~~~i~Yg~Gs-~~G~~~~D~v~ig-~~~-----~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 136 (351)
T 1tzs_A 79 ----------G-----QSFSIQYGTGS-LSGIIGADQVSVE-GLT-----VVGQQFGESVTEPGQTFVDAEFDGILGLGY 136 (351)
T ss_dssp ----------S-----CEEEEESSSCE-EEEEEEEEEEEET-TEE-----EEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred ----------C-----CEEEEEeCCCC-eEEEEEEeEEEEC-CeE-----ECCeEEEEEEeccccccccCCCceEEecCC
Confidence 4 79999999995 8999999999994 445 899999999987663 2 57899999999
Q ss_pred CCCcc------ccccccc------cceEeccCCCCC--ccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEE
Q 011746 270 SPISI------ISQTNTS------YFSYCLPSPYGS--TGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISV 334 (478)
Q Consensus 270 ~~~Sl------~sQl~~~------~FS~cL~~~~~~--~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~v 334 (478)
..++. +.|+..+ .||+||.+.... .|.|+||++|+ ++.+++.|+|+.. ..+|.|.|++|+|
T Consensus 137 ~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v 212 (351)
T 1tzs_A 137 PSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTK----QAYWQIALDNIQV 212 (351)
T ss_dssp GGGSGGGCCCHHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECSE----ETTEEEEEEEEEE
T ss_pred ccccccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecCC----CceEEEEeCEEEE
Confidence 87653 3333322 299999986433 79999999998 8899999999987 6799999999999
Q ss_pred CCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEc
Q 011746 335 GGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFL 414 (478)
Q Consensus 335 gg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~ 414 (478)
|++.+.... ..++||||||++++||+++|++|.+++.+. +.. + .+.++ |+. ...+|+|+|+|
T Consensus 213 ~~~~~~~~~----~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~~--g--~~~~~-C~~-----~~~~P~i~f~f- 274 (351)
T 1tzs_A 213 GGTVMFCSE----GCQAIVDTGTSLITGPSDKIKQLQNAIGAA---PVD--G--EYAVE-CAN-----LNVMPDVTFTI- 274 (351)
T ss_dssp TTEEEECTT----CEEEEECTTCSSEEECHHHHHHHHHHHTCE---ECS--S--SEEEC-GGG-----GGGSCCEEEEE-
T ss_pred CCceEEcCC----CceEEeccCCcceeCCHHHHHHHHHHhCCc---ccC--C--eEEEe-CCC-----CccCCcEEEEE-
Confidence 998864222 246999999999999999999999988653 211 3 44443 753 35789999999
Q ss_pred CCcEEEecCCceEEEeC--CCeEEE-EEEecCC---CCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 415 GGVDLELDVRGTLVVFS--VSQVCL-AFAIFPS---DPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 415 gg~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
||++++|++++|+++.. +...|+ +|...+. ..+.||||++|||++|+|||++++|||||+++|.
T Consensus 275 ~g~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~ 344 (351)
T 1tzs_A 275 NGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPW 344 (351)
T ss_dssp TTEEEEECTTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC--
T ss_pred CCEEEEECHHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCcc
Confidence 56999999999998864 245898 6876531 3458999999999999999999999999999984
No 8
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=6.6e-56 Score=448.03 Aligned_cols=297 Identities=20% Similarity=0.300 Sum_probs=248.3
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCC--CCCC---------CCCCCCCCCCCCCCCcccccc
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCK--PCIH---------CSQQRDPFFDPSKSKTFSKIP 183 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~--~C~~---------C~~~~~~~fdps~SsT~~~~~ 183 (478)
+.+|+.. ++.+|+++|.||||+|++.|+|||||+++||+|. +|.. |.. ++.|||++|+||+..
T Consensus 3 ~~~~l~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~--~~~y~~~~SsT~~~~- 76 (334)
T 1j71_A 3 VPTTLIN---EGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQ--EGTFDPSSSSSAQNL- 76 (334)
T ss_dssp EEEEEEE---CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGS--SCCBCGGGCTTCEEE-
T ss_pred eeEEEec---CCcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccC--CCcCCcccCCCcccC-
Confidence 5677776 6789999999999999999999999999999866 6763 543 479999999999886
Q ss_pred CCChhhhhhhcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCCCCcce
Q 011746 184 CNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASG 263 (478)
Q Consensus 184 C~s~~C~~~~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~G 263 (478)
+ |.|.+.|+||+.+.|.+++|+|+|+ +.. ++++.|||++... ..+|
T Consensus 77 -------------------~-----~~~~i~Yg~Gs~~~G~~~~D~v~~g-~~~-----~~~~~fg~~~~~~----~~~G 122 (334)
T 1j71_A 77 -------------------N-----QDFSIEYGDLTSSQGSFYKDTVGFG-GIS-----IKNQQFADVTTTS----VDQG 122 (334)
T ss_dssp -------------------E-----EEEEEEBTTSCEEEEEEEEEEEEET-TEE-----EEEEEEEEEEEES----SSSC
T ss_pred -------------------C-----CceEEEECCCCEEEEEEEEEEEEEC-CEE-----EccEEEEEEEecC----CCcc
Confidence 3 7899999999888999999999995 444 8999999999764 4799
Q ss_pred EEecCCCCC--------cccccccccc------ceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEE
Q 011746 264 IMGLDRSPI--------SIISQTNTSY------FSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDIT 328 (478)
Q Consensus 264 ilGLg~~~~--------Sl~sQl~~~~------FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~ 328 (478)
|||||+... +++.||..+. ||+||.+.....|.|+||++|+ ++.+++.|+|+.. ..+|.|.
T Consensus 123 ilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~ 198 (334)
T 1j71_A 123 IMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTS----SVELRVH 198 (334)
T ss_dssp EEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECCC----SSSCEEE
T ss_pred EEEEcCCcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCceEEEEccC----CCeEEEE
Confidence 999999865 4555655432 9999997655689999999998 7889999999987 4589999
Q ss_pred EeEEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCe
Q 011746 329 ITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPK 408 (478)
Q Consensus 329 l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~ 408 (478)
+++|+||++.+..+ .++||||||++++||+++|++|.+++.+.+ +...+ .+.+.+|+ .+|+
T Consensus 199 l~~i~v~g~~~~~~------~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~---~~~~~--~~~~~~C~--------~~p~ 259 (334)
T 1j71_A 199 LGSINFDGTSVSTN------ADVVLDSGTTITYFSQSTADKFARIVGATW---DSRNE--IYRLPSCD--------LSGD 259 (334)
T ss_dssp EEEEEETTEEEEEE------EEEEECTTCSSEEECHHHHHHHHHHHTCEE---ETTTT--EEECSSSC--------CCSE
T ss_pred EeEEEECCEeccCC------ccEEEeCCCCcEecCHHHHHHHHHHcCCcc---cCCCc--eEEEEcCC--------CCCc
Confidence 99999999987643 359999999999999999999999998753 22222 33313474 2799
Q ss_pred EEEEEcCCcEEEecCCceEEEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 409 ITFHFLGGVDLELDVRGTLVVFSVSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 409 i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
|+|+|.||++++|++++|+++...+..|+ ++... +.||||++|||++|+|||++++|||||+++|+
T Consensus 260 i~f~f~~g~~~~i~~~~y~~~~~~~~~C~~~i~~~----~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 326 (334)
T 1j71_A 260 AVFNFDQGVKITVPLSELILKDSDSSICYFGISRN----DANILGDNFLRRAYIVYDLDDKTISLAQVKYT 326 (334)
T ss_dssp EEEEESTTCEEEEEGGGGEEECSSSSCEEESEEEC----TTCEECHHHHTTEEEEEETTTTEEEEEEECCC
T ss_pred eEEEEcCCcEEEECHHHheeecCCCCeeEEEEeEC----CCcEEChHhhccEEEEEECCCCEEEEEecCCC
Confidence 99999777999999999999875444698 45543 25999999999999999999999999999995
No 9
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=1.1e-55 Score=444.83 Aligned_cols=294 Identities=21% Similarity=0.332 Sum_probs=244.5
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNC 204 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 204 (478)
.+.+|+++|.||||+|++.|+|||||+++||+|.+|..| .+.++.|||++|+||+.. +
T Consensus 13 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c-~~~~~~y~~~~SsT~~~~--------------------~- 70 (325)
T 2apr_A 13 NDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSGQTKYDPNQSSTYQAD--------------------G- 70 (325)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC-CTTSCCBCGGGCTTCEEE--------------------E-
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH-hcCCCCCCcccCCCeeeC--------------------C-
Confidence 789999999999999999999999999999999999998 666789999999999875 3
Q ss_pred CCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC--CCcceEEecCCCCCc-------cc
Q 011746 205 SSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ--NGASGIMGLDRSPIS-------II 275 (478)
Q Consensus 205 ~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~--~~~~GilGLg~~~~S-------l~ 275 (478)
|.|.+.|+||+.+.|.+++|+|+|+ +.. ++++.|||++...+.| ...+||||||+..++ ++
T Consensus 71 ----~~~~i~Yg~Gs~~~G~~~~D~v~~g-~~~-----v~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~ 140 (325)
T 2apr_A 71 ----RTWSISYGDGSSASGILAKDNVNLG-GLL-----IKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPM 140 (325)
T ss_dssp ----EEEEEECTTSCEEEEEEEEEEEEET-TEE-----EEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCCCHH
T ss_pred ----CEEEEEECCCCCEEEEEEEEEEEEC-CEE-----ECcEEEEEEeccCcccccCCCceEEEeCCcccccccCCCCHH
Confidence 7999999999889999999999994 445 8999999999876544 348999999998765 33
Q ss_pred cccccc------cceEeccCC-CCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCccccc
Q 011746 276 SQTNTS------YFSYCLPSP-YGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT 347 (478)
Q Consensus 276 sQl~~~------~FS~cL~~~-~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~ 347 (478)
.|+..+ .||+||.+. ....|.|+||++|+ ++.+++.|+|+... +.+|.|.+++|+||+ .+. ...
T Consensus 141 ~~l~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~vg~-~~~--~~~-- 212 (325)
T 2apr_A 141 DNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNS---RGWWGITVDRATVGT-STV--ASS-- 212 (325)
T ss_dssp HHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBCT---TSSCEEEECEEEETT-EEE--ECC--
T ss_pred HHHHhcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccCC---CCEEEEEEeEEEECC-Eec--CCC--
Confidence 444433 299999753 34589999999998 88999999999752 568999999999999 332 222
Q ss_pred CCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceE
Q 011746 348 KLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTL 427 (478)
Q Consensus 348 ~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 427 (478)
.++||||||++++||+++|++|.+++.+.+. .. + .+.++ |+ ...+|+|+|+|+| .+++||+++|+
T Consensus 213 -~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~---~~-g--~~~~~-C~------~~~~p~i~f~f~g-~~~~ip~~~~~ 277 (325)
T 2apr_A 213 -FDGILDTGTTLLILPNNIAASVARAYGASDN---GD-G--TYTIS-CD------TSAFKPLVFSING-ASFQVSPDSLV 277 (325)
T ss_dssp -EEEEECTTCSSEEEEHHHHHHHHHHHTCEEC---SS-S--CEEEC-SC------GGGCCCEEEEETT-EEEEECGGGGE
T ss_pred -ceEEEecCCccEECCHHHHHHHHHHHhcccC---CC-C--eEEEE-CC------CCCCCcEEEEECC-EEEEECHHHEE
Confidence 3599999999999999999999999876532 21 3 33443 74 2358999999966 59999999999
Q ss_pred EEeCCCeEEEE-EEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 428 VVFSVSQVCLA-FAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 428 ~~~~~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
++.. +..|++ +...+ .+.||||++|||++|+|||++++|||||+++
T Consensus 278 ~~~~-~~~C~~~i~~~~--~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 278 FEEF-QGQCIAGFGYGN--WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp EEEE-TTEEEESEEEES--SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EcCC-CCeEEEEEEcCC--CCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 8765 678985 55544 3479999999999999999999999999874
No 10
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=3.3e-55 Score=441.08 Aligned_cols=300 Identities=23% Similarity=0.401 Sum_probs=250.0
Q ss_pred eeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCccccccCCChhhhhhh
Q 011746 116 QFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSASCRILR 193 (478)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 193 (478)
.+|+... .+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |..+ +.|||++|+||+..
T Consensus 3 ~~~l~n~--~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~----------- 67 (324)
T 1am5_A 3 TEQMKNE--ADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNH--NKFKPRQSSTYVET----------- 67 (324)
T ss_dssp EEEEEEE--TTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTS--CCBCGGGCTTCEEE-----------
T ss_pred eeeeecC--CCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCC--CcCCCccCCCeEeC-----------
Confidence 4566642 67899999999999999999999999999999999984 8754 79999999999876
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCCC
Q 011746 194 KLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRS 270 (478)
Q Consensus 194 ~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~ 270 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. ++++.|||++...+. | ...+||||||+.
T Consensus 68 ---------~-----~~~~i~Yg~Gs-~~G~~~~D~v~~g-~~~-----~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 126 (324)
T 1am5_A 68 ---------G-----KTVDLTYGTGG-MRGILGQDTVSVG-GGS-----DPNQELGESQTEPGPFQAAAPFDGILGLAYP 126 (324)
T ss_dssp ---------E-----EEEEEECSSCE-EEEEEEEEEEESS-SSC-----EEEEEEEEEEECCSTTTTTCSSSEEEECSCG
T ss_pred ---------C-----cEEEEEECCCC-eEEEEEECceeEC-CcE-----EcccEEEEEEecccccccCCCCceEEecCCc
Confidence 3 78999999995 5999999999994 455 899999999988663 3 578999999998
Q ss_pred CCccc------cccccc------cceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCe
Q 011746 271 PISII------SQTNTS------YFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGE 337 (478)
Q Consensus 271 ~~Sl~------sQl~~~------~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~ 337 (478)
..+.. .|+..+ .||+||.+.+...|.|+||++|+ ++.+++.|+|+.. ..+|.|.+++|+|+++
T Consensus 127 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~ 202 (324)
T 1am5_A 127 SIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTA----EKYWQVALDGITVNGQ 202 (324)
T ss_dssp GGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEEE----ETTEEEEECEEEETTE
T ss_pred cccccCCCchHHhHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCceEEEecCC----CcEEEEEEeEEEECCc
Confidence 77543 333322 29999998755689999999998 8899999999987 6799999999999998
Q ss_pred EeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCc
Q 011746 338 KLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGV 417 (478)
Q Consensus 338 ~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~ 417 (478)
.+.... ..+||||||++++||+++|++|.+++.+. ...+ .+.+ +|+ ....+|+|+|+| ||+
T Consensus 203 ~~~~~~-----~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-----~~~g--~~~~-~C~-----~~~~~P~i~f~f-~g~ 263 (324)
T 1am5_A 203 TAACEG-----CQAIVDTGTSKIVAPVSALANIMKDIGAS-----ENQG--EMMG-NCA-----SVQSLPDITFTI-NGV 263 (324)
T ss_dssp ECCCCC-----EEEEECTTCSSEEECTTTHHHHHHHHTCE-----ECCC--CEEC-CTT-----SSSSSCCEEEEE-TTE
T ss_pred eeeccC-----ceEEEecCCccEECCHHHHHHHHHHhCCc-----ccCC--cEEE-eCC-----CcccCCcEEEEE-CCE
Confidence 764221 35999999999999999999999988653 1223 3333 375 345789999999 559
Q ss_pred EEEecCCceEEEeCCCeEEE-EEEecC---CCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 418 DLELDVRGTLVVFSVSQVCL-AFAIFP---SDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 418 ~~~l~~~~~~~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
+++|++++|+++. +..|+ +|...+ ...+.||||++|||++|+|||++++|||||+++
T Consensus 264 ~~~i~~~~y~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 264 KQPLPPSAYIEGD--QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp EEEECHHHHEEES--SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred EEEECHHHhcccC--CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 9999999999987 66898 787653 124589999999999999999999999999975
No 11
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=1.4e-55 Score=444.73 Aligned_cols=305 Identities=24% Similarity=0.356 Sum_probs=249.1
Q ss_pred eeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCC
Q 011746 117 FPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLL 196 (478)
Q Consensus 117 ~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~ 196 (478)
+++......+.+|+++|.||||+|++.|+|||||+++||+|.+|..|..+.++.|||++|+||+.++
T Consensus 5 v~~~~~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~------------- 71 (329)
T 3c9x_A 5 APNHPSDSADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVS------------- 71 (329)
T ss_dssp EEEEESSTTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECT-------------
T ss_pred eeeecCCCCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcC-------------
Confidence 4454112278899999999999999999999999999999999998766667899999999998861
Q ss_pred CCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC---CCcceEEecCCCCCc
Q 011746 197 PPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ---NGASGIMGLDRSPIS 273 (478)
Q Consensus 197 ~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S 273 (478)
+ |.|.+.|+||+.+.|.+++|+|+|+ +.. ++++.|||++...+.| ...+||||||+...+
T Consensus 72 ------~-----~~~~i~Yg~Gs~~~G~~~~D~v~ig-~~~-----v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s 134 (329)
T 3c9x_A 72 ------G-----ASWSISYGDGSSSSGDVYTDKVTIG-GFS-----VNTQGVESATRVSTEFVQDTVISGLVGLAFDSGN 134 (329)
T ss_dssp ------T-----CBEEEECTTSCEEEEEEEEEEEEET-TEE-----EEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGC
T ss_pred ------C-----CeEEEEeCCCCcEEEEEEEEEEEEC-CEE-----EcceEEEEEEecCccccccCCCceeEEeCccccc
Confidence 2 7999999999879999999999995 445 8999999999876544 478999999998776
Q ss_pred ccc-------------ccccccceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEe
Q 011746 274 IIS-------------QTNTSYFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKL 339 (478)
Q Consensus 274 l~s-------------Ql~~~~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l 339 (478)
.++ |+....||+||.+. ..|.|+||++|+ ++.+++.|+|+... ..+|.|++++|+||++.+
T Consensus 135 ~~~~~~~~~~~~~l~~~i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~ 209 (329)
T 3c9x_A 135 QVRPHPQKTWFSNAASSLAEPLFTADLRHG--QNGSYNFGYIDTSVAKGPVAYTPVDNS---QGFWEFTASGYSVGGGKL 209 (329)
T ss_dssp CCBSSCCCCHHHHHHTTSSSSEEEEECCSS--SCEEEEESSCCGGGCSSCEEEEECBCT---TSSCEEEECCEEETTCCC
T ss_pred ccCCCCCCCHHHHHHHhcCCCEEEEEecCC--CCcEEEEeCcChhhcccceEEEEccCC---CceEEEEEeeEEECCEec
Confidence 532 22223399999874 579999999998 88999999999752 568999999999999876
Q ss_pred eeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEE
Q 011746 340 PFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDL 419 (478)
Q Consensus 340 ~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~ 419 (478)
. ... .++||||||++++||+++|++|.+++.++ .+....+ .+.++ |+ ..+|+|+|+|+ |+++
T Consensus 210 ~--~~~---~~aiiDSGTt~~~lp~~~~~~i~~~i~~a--~~~~~~~--~~~~~-C~-------~~~P~i~f~f~-g~~~ 271 (329)
T 3c9x_A 210 N--RNS---IDGIADTGTTLLLLDDNVVDAYYANVQSA--QYDNQQE--GVVFD-CD-------EDLPSFSFGVG-SSTI 271 (329)
T ss_dssp C--SCC---EEEEECTTCCSEEECHHHHHHHHTTCTTC--EEETTTT--EEEEE-TT-------CCCCCEEEEET-TEEE
T ss_pred c--CCC---ceEEEECCCCcEeCCHHHHHHHHHhCCCc--EEcCCCC--EEEEE-CC-------CCCCcEEEEEC-CEEE
Confidence 4 222 35999999999999999999998887543 1332223 33343 75 46899999995 5999
Q ss_pred EecCCceEEEeC--CCeEEEE-EEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeC
Q 011746 420 ELDVRGTLVVFS--VSQVCLA-FAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPG 475 (478)
Q Consensus 420 ~l~~~~~~~~~~--~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 475 (478)
+|++++|++... +...|++ |...+ ..+.||||++|||++|+|||++++|||||+.
T Consensus 272 ~ip~~~~~~~~~~~~~~~C~~~i~~~~-~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 272 TIPGDLLNLTPLEEGSSTCFGGLQSSS-GIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp EECGGGGEEEESSTTCSEEEESEEECT-TTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred EECHHHeeeeccCCCCCeEEEEEEcCC-CCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 999999998863 2478985 66543 3458999999999999999999999999984
No 12
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=1.2e-55 Score=447.49 Aligned_cols=299 Identities=21% Similarity=0.304 Sum_probs=247.0
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCC--CCCC---------CCCCCCCCCCCCCCCcccccc
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCK--PCIH---------CSQQRDPFFDPSKSKTFSKIP 183 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~--~C~~---------C~~~~~~~fdps~SsT~~~~~ 183 (478)
+.+|+.. ++.+|+++|.||||+|++.|+|||||+++||+|. +|.. |.. ++.|||++|+||+..
T Consensus 3 v~~~l~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~--~~~y~~~~SsT~~~~- 76 (342)
T 2qzx_A 3 VAVTLHN---EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKS--AGSYSPASSRTSQNL- 76 (342)
T ss_dssp EEEEEEE---CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGT--TCCBCGGGCTTCEEE-
T ss_pred eeEEEec---CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccC--CCcCCcccCCCcccC-
Confidence 5667776 6789999999999999999999999999999865 6753 543 479999999999987
Q ss_pred CCChhhhhhhcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCCCCcce
Q 011746 184 CNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASG 263 (478)
Q Consensus 184 C~s~~C~~~~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~G 263 (478)
+ |.|.+.|+||+.+.|.+++|+|+|+ +.. ++++.|||++... ..+|
T Consensus 77 -------------------~-----~~~~i~Yg~Gs~~~G~~~~D~v~~g-~~~-----v~~~~fg~~~~~~----~~~G 122 (342)
T 2qzx_A 77 -------------------N-----TRFDIKYGDGSYAKGKLYKDTVGIG-GVS-----VRDQLFANVWSTS----ARKG 122 (342)
T ss_dssp -------------------E-----EEEEEECTTSCEEEEEEEEEEEEET-TEE-----EEEEEEEEEEEEC----SSSC
T ss_pred -------------------C-----CcEEEEeCCCCeEEEEEEEEEEEEC-CEE-----ecceEEEEEEecC----CCcC
Confidence 3 7899999999888999999999995 444 8999999999864 4799
Q ss_pred EEecCCCCC--------cccccccccc------ceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEE
Q 011746 264 IMGLDRSPI--------SIISQTNTSY------FSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDIT 328 (478)
Q Consensus 264 ilGLg~~~~--------Sl~sQl~~~~------FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~ 328 (478)
|||||+... +++.||..+. ||+||.+.....|.|+||++|+ ++.+++.|+|+.. ..+|.|.
T Consensus 123 ilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~ 198 (342)
T 2qzx_A 123 ILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPITS----EKKLTVG 198 (342)
T ss_dssp EEECSCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCC----SSSCEEE
T ss_pred EEEEccccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecceEEEeccC----CceEEEE
Confidence 999999864 4555654432 9999997655689999999998 8899999999987 4589999
Q ss_pred EeEEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCe
Q 011746 329 ITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPK 408 (478)
Q Consensus 329 l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~ 408 (478)
|++|+||++.+..+ .++||||||++++||+++|++|++++.+.+. +....+ ..+.+ +|+ .+|+
T Consensus 199 l~~i~v~g~~~~~~------~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~-~~~~~~-~~~~~-~C~--------~~p~ 261 (342)
T 2qzx_A 199 LRSVNVRGRNVDAN------TNVLLDSGTTISYFTRSIVRNILYAIGAQMK-FDSAGN-KVYVA-DCK--------TSGT 261 (342)
T ss_dssp EEEEEETTEEEEEE------EEEEECTTCSSEEECHHHHHHHHHHHTCEEE-ECTTSC-EEEEE-CTT--------CCCE
T ss_pred EeEEEECCEecCCC------cCEEEeCCCCCEEcCHHHHHHHHHHhCCeee-eccCCC-cEEEE-ECC--------CCCc
Confidence 99999999987643 3599999999999999999999999987542 112111 02233 363 2799
Q ss_pred EEEEEcCCcEEEecCCceEEEeC-----CCeEEEE-EEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 409 ITFHFLGGVDLELDVRGTLVVFS-----VSQVCLA-FAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 409 i~~~f~gg~~~~l~~~~~~~~~~-----~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
|+|+|.||++++|++++|+++.. ....|++ +... +.||||++|||++|+|||++++|||||+++|+
T Consensus 262 i~f~f~~g~~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~----~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 2qzx_A 262 IDFQFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRES----EDNILGDNFLRSAYVVYNLDDKKISMAPVKYT 333 (342)
T ss_dssp EEEEETTTEEEEEEGGGGEECCBCTTSCBCSSEEESEEEC----SSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred EEEEECCCcEEEEcHHHhcccccccCCCCCCccEEEEecC----CCcEeChHhhhcEEEEEECCCCEEEEEeeCCC
Confidence 99999777999999999999742 2467985 4443 25999999999999999999999999999995
No 13
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=1.7e-55 Score=442.99 Aligned_cols=300 Identities=21% Similarity=0.348 Sum_probs=246.8
Q ss_pred eeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC--CCCCCCCCCCCCCCCCccccccCCChhhhhhh
Q 011746 116 QFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI--HCSQQRDPFFDPSKSKTFSKIPCNSASCRILR 193 (478)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 193 (478)
.+|+... .+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 5 ~~~l~n~--~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~----------- 69 (323)
T 3cms_A 5 SVPLTNY--LDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNH--QRFDPRKSSTFQNL----------- 69 (323)
T ss_dssp EEEEEEE--TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEE-----------
T ss_pred eeeeEec--cCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCC--CCCCCccCCCeEEC-----------
Confidence 4566542 6789999999999999999999999999999999995 49754 79999999999886
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCC-CC--CCcceEEecCCC
Q 011746 194 KLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTS-DQ--NGASGIMGLDRS 270 (478)
Q Consensus 194 ~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~ 270 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. ++++.|||++...+ .| ...+||||||+.
T Consensus 70 ---------~-----~~~~i~Yg~Gs-~~G~~~~D~v~ig-~~~-----~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 128 (323)
T 3cms_A 70 ---------G-----KPLSIHYGTGS-MQGILGYDTVTVS-NIV-----DIQQTVGLSTQEPGDFFTYAEFDGILGMAYP 128 (323)
T ss_dssp ---------E-----EEEEEEETTEE-EEEEEEEEEEEET-TEE-----EEEEEEEEEEECCSHHHHHSSCSEEEECSCG
T ss_pred ---------C-----cEEEEEeCCCC-eEEEEEEEEEEEC-CeE-----EeccEEEEEEecccccccccCCceEEecCcc
Confidence 3 78999999995 8999999999994 445 89999999998765 23 578999999998
Q ss_pred CCcc------ccccccc------cceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCe
Q 011746 271 PISI------ISQTNTS------YFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGE 337 (478)
Q Consensus 271 ~~Sl------~sQl~~~------~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~ 337 (478)
+++. +.|+..+ .||+||.+.... |.|+||++|+ ++.+++.|+|+.. ..+|.|.+++|+|+++
T Consensus 129 ~~s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~~-G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~ 203 (323)
T 3cms_A 129 SLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQE-SMLTLGAIDPSYYTGSLHWVPVTV----QQYWQFTVDSVTISGV 203 (323)
T ss_dssp GGSCTTCCCHHHHHHHTTCSSSSEEEEECCTTSSC-EEEEESCCCGGGEEEEEEEEECSS----BTTBEEEEEEEEETTE
T ss_pred hhhccCCCCHHHHHHHCCCCCCCEEEEEECCCCCC-EEEEECCCChhhccCceEEEECcc----CCeEEEEEeeEEECCE
Confidence 7653 2233322 299999986433 9999999998 7889999999986 5799999999999999
Q ss_pred EeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCc
Q 011746 338 KLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGV 417 (478)
Q Consensus 338 ~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~ 417 (478)
.+.++.. .++||||||++++||++++++|.+++.+. ....+ .+.+ +|+ ....+|+|+|+| ||+
T Consensus 204 ~~~~~~~----~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~~~~g--~~~~-~C~-----~~~~~P~i~f~f-~g~ 266 (323)
T 3cms_A 204 VVACEGG----CQAILDTGTSKLVGPSSDILNIQQAIGAT----QNQYG--EFDI-DCD-----NLSYMPTVVFEI-NGK 266 (323)
T ss_dssp EEESTTC----EEEEECTTCCSEEECHHHHHHHHHHHTCE----EETTT--EEEE-CTT-----CTTTSCCEEEEE-TTE
T ss_pred EeecCCC----cEEEEecCCccEeCCHHHHHHHHHHhCCe----ecCCC--cEEE-ECC-----CCccCceEEEEE-CCE
Confidence 8765432 46999999999999999999999988643 22222 3333 365 345789999999 569
Q ss_pred EEEecCCceEEEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 418 DLELDVRGTLVVFSVSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 418 ~~~l~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
+++|++++|+++. ...|+ +|...+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 267 ~~~i~~~~y~~~~--~~~C~~~i~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 267 MYPLTPSAYTSQD--QGFCTSGFQSEN-HSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp EEEECHHHHEEEE--TTEEEESEEEC----CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECHHHhccCC--CCEEEEEEEeCC-CCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 9999999999983 67898 587654 33589999999999999999999999999874
No 14
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=5.3e-55 Score=440.48 Aligned_cols=302 Identities=22% Similarity=0.366 Sum_probs=251.0
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCccccccCCChhhhhh
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSASCRIL 192 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (478)
.++|+... .+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |..+ +.|||++|+||+..
T Consensus 3 ~~~~l~~~--~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~---------- 68 (329)
T 1dpj_A 3 HDVPLTNY--LNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLH--SKYDHEASSSYKAN---------- 68 (329)
T ss_dssp EEEECEEE--TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEE----------
T ss_pred cceeeeec--CCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCc--CcCCcccCcCeEEC----------
Confidence 34677653 67899999999999999999999999999999999987 8765 78999999999875
Q ss_pred hcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCC-CC--CCcceEEecCC
Q 011746 193 RKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTS-DQ--NGASGIMGLDR 269 (478)
Q Consensus 193 ~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~ 269 (478)
+ |.|.+.|++| .+.|.+++|+|+|+ +.. ++++.|||++...+ .| ...+||||||+
T Consensus 69 ----------~-----~~~~i~Yg~G-s~~G~~~~D~v~ig-~~~-----~~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 126 (329)
T 1dpj_A 69 ----------G-----TEFAIQYGTG-SLEGYISQDTLSIG-DLT-----IPKQDFAEATSEPGLTFAFGKFDGILGLGY 126 (329)
T ss_dssp ----------E-----EEEEEEETTE-EEEEEEEEEEEEET-TEE-----EEEEEEEEEEECCHHHHTTCSCSEEEECSC
T ss_pred ----------C-----cEEEEEECCc-eEEEEEEEEEEEEC-CeE-----ECCeEEEEEEecCccccccCCcceEEEeCC
Confidence 3 7999999999 79999999999994 445 89999999998765 22 56899999999
Q ss_pred CCCccc------ccccc------ccceEeccCCC---CCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEE
Q 011746 270 SPISII------SQTNT------SYFSYCLPSPY---GSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGIS 333 (478)
Q Consensus 270 ~~~Sl~------sQl~~------~~FS~cL~~~~---~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~ 333 (478)
...++. .|+.. ..||+||.+.. ...|.|+||++|+ ++.+++.|+|+.. +.+|.|.+++|+
T Consensus 127 ~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~ 202 (329)
T 1dpj_A 127 DTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRR----KAYWEVKFEGIG 202 (329)
T ss_dssp GGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSS----BTTBEEEEEEEE
T ss_pred chhhccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcCC----CceEEEEeeeEE
Confidence 887643 22222 22999998752 2479999999998 7889999999986 679999999999
Q ss_pred ECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEE
Q 011746 334 VGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHF 413 (478)
Q Consensus 334 vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f 413 (478)
|+++.+... ..++||||||++++||+++|++|.+++.+. ....+ ||.++|.....+|+|+|+|
T Consensus 203 v~~~~~~~~-----~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~~~~g--------~~~~~C~~~~~~P~i~f~f 265 (329)
T 1dpj_A 203 LGDEYAELE-----SHGAAIDTGTSLITLPSGLAEMINAEIGAK----KGWTG--------QYTLDCNTRDNLPDLIFNF 265 (329)
T ss_dssp ETTEEEECS-----SCEEEECTTCSCEEECHHHHHHHHHHHTCE----ECTTS--------SEEECGGGGGGCCCEEEEE
T ss_pred ECCeEecCC-----CccEEeeCCCCcEECCHHHHHHHHHHhCCc----cCCCC--------eEEEECCCCCcCCcEEEEE
Confidence 999987532 246999999999999999999999988643 12222 5555555667899999999
Q ss_pred cCCcEEEecCCceEEEeCCCeEEE-EEEecC---CCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 414 LGGVDLELDVRGTLVVFSVSQVCL-AFAIFP---SDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 414 ~gg~~~~l~~~~~~~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
+ |++++|++++|+++.+ ..|+ +|...+ ...+.||||++|||++|+|||++++|||||+++
T Consensus 266 ~-g~~~~i~~~~y~~~~~--~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 266 N-GYNFTIGPYDYTLEVS--GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp T-TEEEEECTTTSEEEET--TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred C-CEEEEECHHHhEecCC--CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 5 5999999999999874 6898 787653 234589999999999999999999999999874
No 15
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=2.1e-55 Score=443.39 Aligned_cols=296 Identities=23% Similarity=0.327 Sum_probs=244.4
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNC 204 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 204 (478)
.+.+|+++|.||||+|++.|+|||||+++||+|.+|..|.. .++.|||++|+||+.++ +
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~-~~~~y~~~~SsT~~~~~-------------------~- 71 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV-XQTIYTPSKSTTAKLLS-------------------G- 71 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC--CCCBCGGGCTTCEEEE-------------------E-
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcccc-ccCccCCccCccceecC-------------------C-
Confidence 77899999999999999999999999999999999998754 56899999999999862 2
Q ss_pred CCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC---CCcceEEecCCCCCccc------
Q 011746 205 SSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ---NGASGIMGLDRSPISII------ 275 (478)
Q Consensus 205 ~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl~------ 275 (478)
|.|.+.|++|+.+.|.+++|+|+|+ +.. ++++.|||++...+.+ ...+||||||+..++.+
T Consensus 72 ----~~~~i~Yg~Gs~~~G~~~~D~v~~g-~~~-----v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~ 141 (329)
T 1oew_A 72 ----ATWSISYGDGSSSSGDVYTDTVSVG-GLT-----VTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQK 141 (329)
T ss_dssp ----EEEEEECTTSCEEEEEEEEEEEEET-TEE-----EEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCC
T ss_pred ----CeEEEEeCCCCcEEEEEEEEEEEEC-CEE-----EeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCC
Confidence 7899999999879999999999994 445 8999999999876544 46899999999876643
Q ss_pred ---cccc----cccceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCccccc
Q 011746 276 ---SQTN----TSYFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT 347 (478)
Q Consensus 276 ---sQl~----~~~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~ 347 (478)
+|+. ...||+||.+. ..|.|+||++|+ ++.+++.|+|+... +.+|.|++++|+||++.+. ...
T Consensus 142 ~~~~~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~~--~~~-- 212 (329)
T 1oew_A 142 TFFDNAKASLDSPVFTADLGYH--APGTYNFGFIDTTAYTGSITYTAVSTK---QGFWEWTSTGYAVGSGTFK--STS-- 212 (329)
T ss_dssp CHHHHHTTTSSSSEEEEECCSS--SCEEEEESCCCTTSSSSCCEEEECBCT---TSSCEEEEEEEEETTSCCE--EEE--
T ss_pred CHHHHHHHhccCcEEEEEccCC--CCeEEEEeccChHhcccceEEEEccCC---CceEEEEEeeEEECCeecc--CCC--
Confidence 2322 22399999874 579999999998 88999999999752 5789999999999998764 222
Q ss_pred CCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceE
Q 011746 348 KLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTL 427 (478)
Q Consensus 348 ~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 427 (478)
.++||||||++++||+++|++|++++.++ .+....+ .+.++ |+ ..+|+|+|+| ||++++|++++|+
T Consensus 213 -~~aiiDSGTt~~~lP~~~~~~l~~~i~~a--~~~~~~g--~~~~~-C~-------~~~P~i~f~f-gg~~~~ip~~~~~ 278 (329)
T 1oew_A 213 -IDGIADTGTTLLYLPATVVSAYWAQVSGA--KSSSSVG--GYVFP-CS-------ATLPSFTFGV-GSARIVIPGDYID 278 (329)
T ss_dssp -EEEEECTTCCSEEECHHHHHHHHTTSTTC--EEETTTT--EEEEE-TT-------CCCCCEEEEE-TTEEEEECHHHHE
T ss_pred -ceEEEeCCCCCEECCHHHHHHHHHhCCCc--EEcCCCC--EEEEE-CC-------CCCCcEEEEE-CCEEEEECHHHee
Confidence 35999999999999999999999887543 1332223 33343 75 4689999999 6699999999999
Q ss_pred EEeC--CCeEEEE-EEecCCCCCeeeechhhhcceEEEEeC-CCCEEEEeeC
Q 011746 428 VVFS--VSQVCLA-FAIFPSDPNSISLGNVQQRGYEVHYDV-AGRRLGFGPG 475 (478)
Q Consensus 428 ~~~~--~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~-~~~rIGFa~~ 475 (478)
+... +...|++ |...+ ..+.||||++|||++|+|||+ +++|||||+.
T Consensus 279 ~~~~~~~~~~C~~~i~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 279 FGPISTGSSSCFGGIQSSA-GIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp EEESSTTCSEEEESEEEST-TTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred eeecCCCCCeEEEEEEeCC-CCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 8763 3478985 56543 345899999999999999999 9999999984
No 16
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=9.9e-56 Score=453.93 Aligned_cols=303 Identities=22% Similarity=0.358 Sum_probs=250.0
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC----CCCCCCCCCCCCCCCCccccccCCChhhh
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI----HCSQQRDPFFDPSKSKTFSKIPCNSASCR 190 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~ 190 (478)
..+|+... .+.+|+++|+||||+|+|.|+|||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 51 ~~~~l~n~--~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~--~~y~~~~SsT~~~~-------- 118 (383)
T 2x0b_A 51 SSVILTNY--MDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKHN-------- 118 (383)
T ss_dssp CEEEEEEE--TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTS--CCBCGGGCTTCEEE--------
T ss_pred ceEeeeec--CCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCC--CCCCCCCCCcEEEC--------
Confidence 34666642 6789999999999999999999999999999999996 39765 79999999999886
Q ss_pred hhhcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEec
Q 011746 191 ILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGL 267 (478)
Q Consensus 191 ~~~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGL 267 (478)
+ |.|.+.|++|+ ++|++++|+|+|+ +.. ++ +.|||++...+. | ..+||||||
T Consensus 119 ------------~-----~~~~i~Yg~Gs-~~G~~~~Dtv~ig-~~~-----v~-~~Fg~a~~~~g~~f~~~~~dGIlGL 173 (383)
T 2x0b_A 119 ------------G-----TELTLRYSTGT-VSGFLSQDIITVG-GIT-----VT-QMFGEVTEMPALPFMLAEFDGVVGM 173 (383)
T ss_dssp ------------E-----EEEEEECSSCE-EEEEEEEEEEEET-TEE-----EE-EEEEEEEECCHHHHTTCSSSEEEEC
T ss_pred ------------C-----cEEEEEcCCcc-EEEEEEeeEEEEc-Cce-----EE-EEEEEEEecCCcccccCCCceEecc
Confidence 4 78999999995 8999999999994 445 88 999999987653 2 578999999
Q ss_pred CCCCCcc----------cccccc--ccceEeccCCCCC----ccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEe
Q 011746 268 DRSPISI----------ISQTNT--SYFSYCLPSPYGS----TGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITIT 330 (478)
Q Consensus 268 g~~~~Sl----------~sQl~~--~~FS~cL~~~~~~----~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~ 330 (478)
|+..+|. ++|... ..||+||.+.... .|.|+|||+|+ ++.+++.|+|+.. ..+|.|.++
T Consensus 174 g~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~----~~~w~v~l~ 249 (383)
T 2x0b_A 174 GFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMK 249 (383)
T ss_dssp SCGGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSS----TTSCEEEEC
T ss_pred CCCccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCC----CceEEEEEe
Confidence 9988763 344221 2299999986433 89999999998 8889999999986 679999999
Q ss_pred EEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEE
Q 011746 331 GISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKIT 410 (478)
Q Consensus 331 gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~ 410 (478)
+|+||++.+.... ..++||||||+++++|+++|++|.+++.+. . ..+ .+.++ |+. ...+|+|+
T Consensus 250 ~i~v~~~~~~~~~----~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~----~-~~g--~~~v~-C~~-----~~~~P~i~ 312 (383)
T 2x0b_A 250 GVSVGSSTLLCED----GCLALVDTGASYISGSTSSIEKLMEALGAK----K-RLF--DYVVK-CNE-----GPTLPDIS 312 (383)
T ss_dssp EEEESSCCCBSTT----CEEEEECTTCSSEEECHHHHHHHHHHHTCE----E-CSS--CEEEE-GGG-----TTTCCCEE
T ss_pred EEEeCCceEEcCC----CcEEEEcCCCceEEcCHHHHHHHHHHhCCc----c-cCC--cEEEe-ccc-----cccCceEE
Confidence 9999998753221 246999999999999999999999998653 2 333 44454 863 35789999
Q ss_pred EEEcCCcEEEecCCceEEEeC--CCeEEE-EEEecCC---CCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 411 FHFLGGVDLELDVRGTLVVFS--VSQVCL-AFAIFPS---DPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 411 ~~f~gg~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
|+|+ |++++|++++|+++.. +...|+ +|...+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 313 f~~~-g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 313 FHLG-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp EEET-TEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEC-CEEEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 9994 5999999999998864 246898 7877531 24589999999999999999999999999874
No 17
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=2.8e-55 Score=440.68 Aligned_cols=293 Identities=23% Similarity=0.386 Sum_probs=245.6
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQD 202 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~ 202 (478)
.+.+|+++|+||||+|++.|++||||+++||+|.+|.. |..+ +.|||++|+||+..
T Consensus 9 ~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~-------------------- 66 (320)
T 4aa9_A 9 LDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNH--HRFDPRKSSTFRNL-------------------- 66 (320)
T ss_dssp CCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEE--------------------
T ss_pred cCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCC--CCCCCCCCcCeEcC--------------------
Confidence 67899999999999999999999999999999999985 7654 79999999999987
Q ss_pred CCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCCCCCc------
Q 011746 203 NCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRSPIS------ 273 (478)
Q Consensus 203 ~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~S------ 273 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. ++++.|||++...+. | ...+||||||+...+
T Consensus 67 ~-----~~~~i~Yg~gs-~~G~~~~D~v~ig-~~~-----v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~ 134 (320)
T 4aa9_A 67 G-----KPLSIHYGTGS-MEGFLGYDTVTVS-NIV-----DPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVP 134 (320)
T ss_dssp E-----EEEEEEETTEE-EEEEEEEEEEEET-TEE-----EEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCC
T ss_pred C-----cEEEEEECCcE-EEEEEEEEEEEEC-CEe-----ecCeEEEEEEEcccccccccCcccEEecCcccccccCCCC
Confidence 3 78999999995 8999999999995 445 899999999988762 3 467999999998654
Q ss_pred ccccccccc------ceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccc
Q 011746 274 IISQTNTSY------FSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYI 346 (478)
Q Consensus 274 l~sQl~~~~------FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~ 346 (478)
++.|+..+. ||+||.+. ...|.|+||++|+ ++.+++.|+|+.. +.+|.|++++|+|+++.+..+..
T Consensus 135 ~~~~l~~~g~i~~~~Fs~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~~~~~-- 207 (320)
T 4aa9_A 135 VFDNMMDRHLVARDLFSVYMDRN-GQGSMLTLGAIDPSYYTGSLHWVPVTL----QQYWQFTVDSVTINGVAVACVGG-- 207 (320)
T ss_dssp HHHHHHHTTCSSSSEEEEECCSS-SSCCEEEETCCCGGGEEEEEEEEECSS----BTTBEEEECEEEETTEEEESTTC--
T ss_pred HHHHHHhCCCCCCceEEEEeCCC-CCCeEEEEcccCHHHccCceEEEEccc----CCceEEEEeEEEECCEEeccCCC--
Confidence 344444332 99999986 4689999999998 8889999999976 67999999999999998865422
Q ss_pred cCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCce
Q 011746 347 TKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGT 426 (478)
Q Consensus 347 ~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~ 426 (478)
..+||||||++++||++++++|.+++.+. ....+ .+.++ |. ....+|+|+|+|+ |++++|++++|
T Consensus 208 --~~~iiDsGtt~~~lP~~~~~~i~~~~~~~----~~~~g--~~~~~-C~-----~~~~~p~i~f~f~-g~~~~l~~~~y 272 (320)
T 4aa9_A 208 --CQAILDTGTSVLFGPSSDILKIQMAIGAT----ENRYG--EFDVN-CG-----NLRSMPTVVFEIN-GRDYPLSPSAY 272 (320)
T ss_dssp --EEEEECTTCSSEEEEHHHHHHHHHHTTCE----ECTTS--CEEEC-GG-----GGGGCCCEEEEET-TEEEEECHHHH
T ss_pred --cEEEEECCCCcEECCHHHHHHHHHHhCCc----ccCCC--cEEEe-CC-----CCCcCceEEEEEC-CEEEEECHHHh
Confidence 46999999999999999999999988653 12223 33332 54 4568999999995 59999999999
Q ss_pred EEEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 427 LVVFSVSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 427 ~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
+.+. ...|+ +|..... .+.||||++|||++|+|||.+++|||||+++
T Consensus 273 ~~~~--~~~C~~~i~~~~~-~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 273 TSKD--QGFCTSGFQGDNN-SELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp EEEE--TTEEEESEEEETT-CCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ccCC--CCeEEEEEEcCCC-CCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 9874 56898 6776433 3579999999999999999999999999975
No 18
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=6.8e-55 Score=439.68 Aligned_cols=301 Identities=26% Similarity=0.424 Sum_probs=248.6
Q ss_pred eeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCccccccCCChhhhhhhc
Q 011746 117 FPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIH--CSQQRDPFFDPSKSKTFSKIPCNSASCRILRK 194 (478)
Q Consensus 117 ~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~ 194 (478)
+|+. . .+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |..+ +.|||++|+||+..
T Consensus 5 ~~l~-~--~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~------------ 67 (329)
T 1htr_B 5 EPMA-Y--MDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSH--SRFNPSESSTYSTN------------ 67 (329)
T ss_dssp CGGG-G--TTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEE------------
T ss_pred eeeE-E--cCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCC--CcCCCccCCCeEEC------------
Confidence 5665 2 77999999999999999999999999999999999985 8754 79999999999886
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCCCC
Q 011746 195 LLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRSP 271 (478)
Q Consensus 195 ~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~ 271 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. ++++.|||++...+. | ...+||||||+..
T Consensus 68 --------~-----~~~~i~Yg~gs-~~G~~~~D~v~~g-~~~-----~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~ 127 (329)
T 1htr_B 68 --------G-----QTFSLQYGSGS-LTGFFGYDTLTVQ-SIQ-----VPNQEFGLSENEPGTNFVYAQFDGIMGLAYPA 127 (329)
T ss_dssp --------E-----EEEEEEETTEE-EEEEEEEEEEEET-TEE-----EEEEEEEEESSCSSGGGGGCSCCEEEECCCCS
T ss_pred --------C-----cEEEEEeCCCC-eEEEEEeeeEEEc-ceE-----ECceEEEEEEEccccccccCCCceEEecCCCc
Confidence 3 78999999995 5999999999994 445 899999999987663 3 5789999999998
Q ss_pred Cccc------cccccc------cceEeccCCCCC-ccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCe
Q 011746 272 ISII------SQTNTS------YFSYCLPSPYGS-TGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGE 337 (478)
Q Consensus 272 ~Sl~------sQl~~~------~FS~cL~~~~~~-~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~ 337 (478)
.+.. .|+..+ .||+||.+.... .|.|+||++|+ ++.+++.|+|+.. +.+|.|++++|+|+++
T Consensus 128 ~s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~ 203 (329)
T 1htr_B 128 LSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQ----ELYWQIGIEEFLIGGQ 203 (329)
T ss_dssp CCCTTCCSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBCS----SSSCEEEECEEEETTE
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECCC----CceEEEEEeEEEECCc
Confidence 7643 333322 299999987544 89999999998 7889999999986 6799999999999998
Q ss_pred EeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCc
Q 011746 338 KLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGV 417 (478)
Q Consensus 338 ~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~ 417 (478)
.+..... ..++||||||++++||+++|++|.+++.+.. ...+ .+.+ .|++ ...+|+|+|+| ||+
T Consensus 204 ~~~~~~~---~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~----~~~g--~~~~-~C~~-----~~~~P~i~f~f-~g~ 267 (329)
T 1htr_B 204 ASGWCSE---GCQAIVDTGTSLLTVPQQYMSALLQATGAQE----DEYG--QFLV-NCNS-----IQNLPSLTFII-NGV 267 (329)
T ss_dssp ECCTTTT---CEEEEECTTCCSEEEEGGGHHHHHHHHTCEE----CTTS--CEEE-CGGG-----GGGSCCEEEEE-TTE
T ss_pred eeeecCC---CceEEEecCCccEECCHHHHHHHHHHhCCee----cCCC--eEEE-eCCC-----cccCCcEEEEE-CCE
Confidence 7641111 2469999999999999999999999886542 2223 3334 3763 35789999999 569
Q ss_pred EEEecCCceEEEeCCCeEEE-EEEecC---CCCC-eeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 418 DLELDVRGTLVVFSVSQVCL-AFAIFP---SDPN-SISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 418 ~~~l~~~~~~~~~~~~~~Cl-~~~~~~---~~~~-~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
+++|++++|+++.. ..|+ +|...+ ...+ .||||++|||++|+|||++++|||||+++
T Consensus 268 ~~~i~~~~y~~~~~--g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 268 EFPLPPSSYILSNN--GYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp EEEECHHHHEEECS--SCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECHHHhcccCC--CEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 99999999999876 3898 787654 1234 89999999999999999999999999874
No 19
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=1.7e-54 Score=438.79 Aligned_cols=300 Identities=20% Similarity=0.354 Sum_probs=245.2
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCC--CC---------CCCCCCCCCCCCCCCCcccccc
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKP--CI---------HCSQQRDPFFDPSKSKTFSKIP 183 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~--C~---------~C~~~~~~~fdps~SsT~~~~~ 183 (478)
+.+|+.. ++.+|+++|.||||+|++.|++||||+++||+|.. |. .|.. ++.|||++|+||+..
T Consensus 3 v~~~l~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~--~~~y~~~~SsT~~~~- 76 (342)
T 3pvk_A 3 VPVTLHN---EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQ--KGTYDPSGSSASQDL- 76 (342)
T ss_dssp EEEEEEE---CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGT--TCCBCGGGCTTCEEE-
T ss_pred cceEEec---CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCC--CCcCCCccCcceeec-
Confidence 4566666 67899999999999999999999999999998543 42 3654 479999999999987
Q ss_pred CCChhhhhhhcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCCCCcce
Q 011746 184 CNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASG 263 (478)
Q Consensus 184 C~s~~C~~~~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~G 263 (478)
+ |.|.+.|+||+.+.|.+++|+|+|+ +.. ++++.|||++... ..+|
T Consensus 77 -------------------~-----~~~~i~Yg~gs~~~G~~~~D~v~ig-~~~-----v~~~~fg~~~~~~----~~~G 122 (342)
T 3pvk_A 77 -------------------N-----TPFKIGYGDGSSSQGTLYKDTVGFG-GVS-----IKNQVLADVDSTS----IDQG 122 (342)
T ss_dssp -------------------E-----EEEEEECSSSCEEEEEEEEEEEEET-TEE-----EEEEEEEEEEEES----SSSC
T ss_pred -------------------C-----CeEEEEecCCCeEEEEEEEEEEEEC-CEE-----ecceEEEEEEccC----CCcc
Confidence 3 7899999999889999999999995 445 8999999999875 4799
Q ss_pred EEecCCCCC-------cccccccccc------ceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEE
Q 011746 264 IMGLDRSPI-------SIISQTNTSY------FSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITI 329 (478)
Q Consensus 264 ilGLg~~~~-------Sl~sQl~~~~------FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l 329 (478)
|||||+... +++.||..+. ||+||.+.....|.|+|||+|+ ++.+++.|+|+.. +.+|.|++
T Consensus 123 ilGLg~~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l 198 (342)
T 3pvk_A 123 ILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTS----DRELRISL 198 (342)
T ss_dssp EEECSCGGGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCC----SSSCEEEE
T ss_pred EEEecCccccccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeeeeEEeecCc----cceEEEEE
Confidence 999999873 5666665442 9999988766689999999998 8899999999987 45899999
Q ss_pred eEEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeE
Q 011746 330 TGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKI 409 (478)
Q Consensus 330 ~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i 409 (478)
++|+|+++.+..+. ..+||||||++++||+++|++|.+++.+... ....+...+.+ +|+ ..|+|
T Consensus 199 ~~i~v~g~~~~~~~-----~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~--~~~~~~~~~~~-~C~--------~~p~i 262 (342)
T 3pvk_A 199 GSVEVSGKTINTDN-----VDVLLDSGTTITYLQQDLADQIIKAFNGKLT--QDSNGNSFYEV-DCN--------LSGDV 262 (342)
T ss_dssp EEEEETTEEEEEEE-----EEEEECTTCSSEEECHHHHHHHHHHTTCEEE--ECTTSCEEEEE-CSC--------CCSEE
T ss_pred eEEEECCEEecCCC-----ceEEEeCCCCCeecCHHHHHHHHHHcCCeec--ccCCCceEEEE-ecC--------CCCce
Confidence 99999999887542 3599999999999999999999999976532 11111001223 363 35999
Q ss_pred EEEEcCCcEEEecCCceEEEeC--CC---eEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 410 TFHFLGGVDLELDVRGTLVVFS--VS---QVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 410 ~~~f~gg~~~~l~~~~~~~~~~--~~---~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
+|+|.+|++++|++++|+++.. .+ ..|+ ++.+. +.||||++|||++|++||.+++|||||+++|+
T Consensus 263 ~f~f~~g~~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~~----~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 3pvk_A 263 VFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVN----DANILGDNFLRSAYIVYDLDDNEISLAQVKYT 333 (342)
T ss_dssp EEEESTTCEEEEEGGGGEEC----------CEEESEEEC----TTCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred EEEECCCCEEEEcHHHheeeccccCCCcCCeeEEEEeeC----CCeEeCHHHHhcEEEEEECCCCEEEEEecCCC
Confidence 9999867999999999999742 22 6797 55542 37999999999999999999999999999995
No 20
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=5.3e-54 Score=441.94 Aligned_cols=311 Identities=23% Similarity=0.366 Sum_probs=248.8
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNC 204 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 204 (478)
.+..|+++|+||||+|++.|+|||||+++||+|.+|..|. +.|||++|+||+.. +
T Consensus 11 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~----~~f~~~~SsT~~~~--------------------~- 65 (383)
T 2ewy_A 11 SGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYID----TYFDTERSSTYRSK--------------------G- 65 (383)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTBS----CCCCGGGCTTCEEE--------------------E-
T ss_pred CCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCccc----cCcccccCccceeC--------------------C-
Confidence 4467999999999999999999999999999999997774 68999999999987 3
Q ss_pred CCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC---CCcceEEecCCCCCc--------
Q 011746 205 SSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ---NGASGIMGLDRSPIS-------- 273 (478)
Q Consensus 205 ~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S-------- 273 (478)
|.|.+.|++|+ +.|.+++|+|+|++... . -..+.|+|.....+.| ..++||||||+..++
T Consensus 66 ----~~~~i~Yg~Gs-~~G~~~~Dtv~i~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~ 136 (383)
T 2ewy_A 66 ----FDVTVKYTQGS-WTGFVGEDLVTIPKGFN---T-SFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLET 136 (383)
T ss_dssp ----EEEEEECSSCE-EEEEEEEEEEEETTTEE---E-EEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCC
T ss_pred ----ceEEEEECCcE-EEEEEEEEEEEECCCcc---c-eeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccC
Confidence 78999999995 69999999999954321 0 1246788887666555 367999999998764
Q ss_pred ----ccccccccc-ceEeccC-------CCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEee
Q 011746 274 ----IISQTNTSY-FSYCLPS-------PYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLP 340 (478)
Q Consensus 274 ----l~sQl~~~~-FS~cL~~-------~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~ 340 (478)
|++|...+. ||+||.. .....|.|+||++|+ ++.+++.|+|+.. ..+|.|.+++|+||++.+.
T Consensus 137 ~~~~l~~q~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~~ 212 (383)
T 2ewy_A 137 FFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKE----EWYYQIEILKLEIGGQSLN 212 (383)
T ss_dssp HHHHHHHHHTCCSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSS----BTTBBCCEEEEEETTEECC
T ss_pred HHHHHHHccCCCcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCC----CceEEEEEEEEEECCEEcc
Confidence 445554432 9999863 123589999999998 8899999999987 5799999999999999988
Q ss_pred eCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCC--CCcccceecCCCcccccCeEEEEEcCC--
Q 011746 341 FNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDE--DDFDTCYDLSAYETVVVPKITFHFLGG-- 416 (478)
Q Consensus 341 i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~d~C~~~~~~~~~~~P~i~~~f~gg-- 416 (478)
++...|...++||||||++++||+++|++|++++.+.+.. +.... .. .....|++........+|+|+|+|.|+
T Consensus 213 ~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~-~~~~~-~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~ 290 (383)
T 2ewy_A 213 LDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLI-PEFSD-GFWTGSQLACWTNSETPWSYFPKISIYLRDENS 290 (383)
T ss_dssp CCTTTTTSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCS-SCCCH-HHHHTSEEEEECSSSCGGGGSCCEEEEEECSST
T ss_pred ccccccCCccEEEEcCCccccCCHHHHHHHHHHHhhhccc-ccCcc-ccccccccccccCCcccHhhCCcEEEEECCCCC
Confidence 7766554467999999999999999999999999987421 11110 01 113359877654456799999999774
Q ss_pred ---cEEEecCCceEEEeC---CCeEEEEE--EecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 417 ---VDLELDVRGTLVVFS---VSQVCLAF--AIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 417 ---~~~~l~~~~~~~~~~---~~~~Cl~~--~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
.+++|++++|+++.. .+..|++| .+. .+.||||++|||++|+|||++++|||||+++|+
T Consensus 291 ~~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~~---~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 357 (383)
T 2ewy_A 291 SRSFRITILPQLYIQPMMGAGLNYECYRFGISPS---TNALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357 (383)
T ss_dssp TEEEEEEECHHHHEEEECCCTTCSEEEEESEEEE---SSCEEECHHHHTTEEEEEETTTTEEEEEECTTC
T ss_pred CceEEEEEChHHheeecccCCCCceeEEEEecCC---CCcEEEChHHhCCeeEEEECCCCeEEEEeccCC
Confidence 379999999999873 35689864 332 237999999999999999999999999999994
No 21
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=1e-54 Score=440.21 Aligned_cols=305 Identities=21% Similarity=0.353 Sum_probs=250.8
Q ss_pred cceeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC----CCCCCCCCCCCCCCCCccccccCCChh
Q 011746 113 KSFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI----HCSQQRDPFFDPSKSKTFSKIPCNSAS 188 (478)
Q Consensus 113 ~~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~ 188 (478)
+...+|+... .+.+|+++|.||||+|++.|++||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 6 ~~~~~~l~n~--~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~--~~y~~~~SsT~~~~------ 75 (341)
T 3k1w_A 6 TTSSVILTNY--MDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKHN------ 75 (341)
T ss_dssp BCEEEEEEEE--TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTS--CCBCGGGCTTCEEE------
T ss_pred CCccccceEc--cCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCC--CCCCCCcCcCeeEC------
Confidence 4467787763 6789999999999999999999999999999999998 38644 79999999999875
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEE
Q 011746 189 CRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIM 265 (478)
Q Consensus 189 C~~~~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~Gil 265 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. + ++.|||++...+. | ...+|||
T Consensus 76 --------------~-----~~~~i~Yg~gs-~~G~~~~D~v~ig-~~~-----v-~~~fg~~~~~~~~~~~~~~~~Gil 128 (341)
T 3k1w_A 76 --------------G-----TELTLRYSTGT-VSGFLSQDIITVG-GIT-----V-TQMFGEVTEMPALPFMLAEFDGVV 128 (341)
T ss_dssp --------------E-----EEEEEEETTEE-EEEEEEEEEEEET-TEE-----E-EEEEEEEEECCHHHHTTCSSSEEE
T ss_pred --------------C-----CEEEEEECCcE-EEEEEEEEEEEEC-Cce-----e-eEEEEEEEEccccccccCCcceEE
Confidence 3 78999999995 8999999999994 445 8 9999999988653 2 5679999
Q ss_pred ecCCCCCc------cccccccc------cceEeccCCC----CCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEE
Q 011746 266 GLDRSPIS------IISQTNTS------YFSYCLPSPY----GSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDIT 328 (478)
Q Consensus 266 GLg~~~~S------l~sQl~~~------~FS~cL~~~~----~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~ 328 (478)
|||+...+ ++.++..+ .||+||.+.. ...|.|+||++|+ ++.+++.|+|+.. +.+|.|.
T Consensus 129 GLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~ 204 (341)
T 3k1w_A 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQ 204 (341)
T ss_dssp ECSCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECSS----TTSCEEE
T ss_pred ECCchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecCC----CCEEEEE
Confidence 99998775 33333332 2999999864 3389999999998 8889999999986 6799999
Q ss_pred EeEEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCe
Q 011746 329 ITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPK 408 (478)
Q Consensus 329 l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~ 408 (478)
+++|+|+++.+..+.. ..+||||||++++||++++++|.+++.+. + . .. .+.++ |. ....+|+
T Consensus 205 l~~i~v~~~~~~~~~~----~~~iiDsGtt~~~lP~~~~~~i~~~~~~~---~-~-~~--g~~~~-C~-----~~~~~p~ 267 (341)
T 3k1w_A 205 MKGVSVGSSTLLCEDG----CLALVDTGASYISGSTSSIEKLMEALGAK---K-R-LF--DYVVK-CN-----EGPTLPD 267 (341)
T ss_dssp ECCEEETTEEEECTTC----EEEEECTTCSSEEECHHHHHHHHHHHTCE---E-C-SS--CEEEE-GG-----GGGGCCC
T ss_pred EeEEEECCEEeecCCC----CEEEEECCCChhcCCHHHHHHHHHHcCCe---e-c-CC--CeEEe-CC-----CCCcCCc
Confidence 9999999997644332 45999999999999999999999988654 1 1 11 12332 53 4567899
Q ss_pred EEEEEcCCcEEEecCCceEEEeC--CCeEEE-EEEecC---CCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 409 ITFHFLGGVDLELDVRGTLVVFS--VSQVCL-AFAIFP---SDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 409 i~~~f~gg~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
|+|+|+ |++++|++++|+++.. ....|+ +|...+ ...+.||||++|||++|+|||.+++|||||+++
T Consensus 268 i~f~f~-g~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 268 ISFHLG-GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp EEEEET-TEEEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEC-CEEEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 999995 5999999999998764 367898 677642 224579999999999999999999999999975
No 22
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=1.5e-54 Score=444.52 Aligned_cols=299 Identities=22% Similarity=0.325 Sum_probs=248.9
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC--CCCCCCCCCCCCCCCCccccccCCChhhhhh
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI--HCSQQRDPFFDPSKSKTFSKIPCNSASCRIL 192 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (478)
..+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 52 ~~~pl~~--~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~---------- 117 (375)
T 1miq_A 52 DVIELDD--VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIK--NLYDSSKSKSYEKD---------- 117 (375)
T ss_dssp BCCCGGG--TBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGS--CCBCGGGCTTCEEE----------
T ss_pred ceEEccc--CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCC--CcCCCccCCceEEC----------
Confidence 3456654 26789999999999999999999999999999999997 48754 79999999999886
Q ss_pred hcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeec----CCCCC--CCcceEEe
Q 011746 193 RKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNN----NTSDQ--NGASGIMG 266 (478)
Q Consensus 193 ~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~----~~g~~--~~~~GilG 266 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. +++ .|||++. .. .| ...+||||
T Consensus 118 ----------~-----~~~~i~Yg~Gs-~~G~~~~Dtv~ig-~~~-----v~~-~Fg~~~~~~~~~~-~f~~~~~dGilG 173 (375)
T 1miq_A 118 ----------G-----TKVDITYGSGT-VKGFFSKDLVTLG-HLS-----MPY-KFIEVTDTDDLEP-IYSSVEFDGILG 173 (375)
T ss_dssp ----------E-----EEEEEEETTEE-EEEEEEEEEEEET-TEE-----EEE-EEEEEEECGGGTT-HHHHSCCCEEEE
T ss_pred ----------C-----cEEEEEeCCCe-EEEEEEEEEEEEc-Cce-----ECc-EEEEEEecccccc-ccccCCCceEEe
Confidence 4 78999999996 8999999999995 444 889 9999998 54 34 56899999
Q ss_pred cCCCCCccc------cccccc------cceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEE
Q 011746 267 LDRSPISII------SQTNTS------YFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGIS 333 (478)
Q Consensus 267 Lg~~~~Sl~------sQl~~~------~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~ 333 (478)
||++.++.. .|+..+ .||+||.+.....|.|+|||+|+ ++.+++.|+|+.. +.+|.|.++ |+
T Consensus 174 Lg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~-i~ 248 (375)
T 1miq_A 174 LGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VH 248 (375)
T ss_dssp CSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSS----SSSSEEEEE-EE
T ss_pred CCCCcccccCCCCHHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCceEEEecCC----CceEEEEEE-EE
Confidence 999887643 233322 29999998754689999999998 7889999999976 679999999 99
Q ss_pred ECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEE
Q 011746 334 VGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHF 413 (478)
Q Consensus 334 vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f 413 (478)
||++.+ . ..++||||||++++||+++|++|.+++.+. ++...+ .+.+ +|+. ..+|+|+|+|
T Consensus 249 v~g~~~----~---~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~~~~g--~~~~-~C~~------~~~P~i~f~f 309 (375)
T 1miq_A 249 FGKQTM----E---KANVIVDSGTTTITAPSEFLNKFFANLNVI---KVPFLP--FYVT-TCDN------KEMPTLEFKS 309 (375)
T ss_dssp ETTEEE----E---EEEEEECTTBSSEEECHHHHHHHHHHHTCE---ECTTSS--CEEE-ETTC------TTCCCEEEEC
T ss_pred ECCEEc----c---cceEEecCCCccEEcCHHHHHHHHHHhCCc---ccCCCC--eEEE-ECCC------CCCCcEEEEE
Confidence 999887 1 246999999999999999999999998653 333333 3434 4753 5789999999
Q ss_pred cCCcEEEecCCceEEEeC--CCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 414 LGGVDLELDVRGTLVVFS--VSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 414 ~gg~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
||++++|++++|+++.. +...|+ +|.+.+...+.||||++|||++|+|||++++|||||+++
T Consensus 310 -~g~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 310 -ANNTYTLEPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp -SSCEEEECGGGSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred -CCEEEEECHHHhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 56999999999999874 346898 888765323589999999999999999999999999874
No 23
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=6.7e-54 Score=442.96 Aligned_cols=310 Identities=21% Similarity=0.348 Sum_probs=248.7
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNC 204 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 204 (478)
.+..|+++|+||||+|++.|+|||||+++||+|.+|..|+ +.|||++|+||+.. +
T Consensus 19 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~~----~~y~~~~SsT~~~~--------------------~- 73 (395)
T 2qp8_A 19 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLH----RYYQRQLSSTYRDL--------------------R- 73 (395)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCS----CCCCGGGCTTCEEE--------------------E-
T ss_pred CCceEEEEEEecCCCceEEEEEecCCCceEEECCCCcccc----CCcCcccCCCceeC--------------------C-
Confidence 4578999999999999999999999999999999997663 68999999999987 3
Q ss_pred CCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceecc-ceeeeeeecCCCCC---CCcceEEecCCCCCc-------
Q 011746 205 SSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWY-PFLLGCTNNNTSDQ---NGASGIMGLDRSPIS------- 273 (478)
Q Consensus 205 ~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~-~~~FGc~~~~~g~~---~~~~GilGLg~~~~S------- 273 (478)
|.|.+.|++|+ +.|.+++|+|+|+++.. ++ .+.|+|.....+.| ..++||||||+..++
T Consensus 74 ----~~~~i~Yg~Gs-~~G~~~~Dtv~ig~g~~-----~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~ 143 (395)
T 2qp8_A 74 ----KGVYVPYTQGK-WEGELGTDLVSIPHGPN-----VTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLE 143 (395)
T ss_dssp ----EEEEEECSSCE-EEEEEEEEEEECTTSCS-----CEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSC
T ss_pred ----ceEEEEECCcE-EEEEEEeEEEEECCCCC-----ceEEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCC
Confidence 78999999995 58999999999953322 32 36788877665555 467999999998764
Q ss_pred -----ccccccccc-ceEeccCC----------CCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECC
Q 011746 274 -----IISQTNTSY-FSYCLPSP----------YGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGG 336 (478)
Q Consensus 274 -----l~sQl~~~~-FS~cL~~~----------~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg 336 (478)
|++|..... ||+||.+. ....|.|+||++|+ ++.+++.|+|+.. +.+|.|.|++|+||+
T Consensus 144 ~~~~~l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g 219 (395)
T 2qp8_A 144 PFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEING 219 (395)
T ss_dssp CHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETT
T ss_pred CHHHHHHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCC----CceEEEEEEEEEECC
Confidence 344443322 99999753 13579999999998 7889999999986 579999999999999
Q ss_pred eEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCC--CCcccceecCCCcccccCeEEEEEc
Q 011746 337 EKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDE--DDFDTCYDLSAYETVVVPKITFHFL 414 (478)
Q Consensus 337 ~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~d~C~~~~~~~~~~~P~i~~~f~ 414 (478)
+.+.++...|...++||||||++++||+++|++|++++.+.+.. +.... .. .....|+.........+|+|+|+|.
T Consensus 220 ~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~-~~~~~-~~~~~~~~~C~~~~~~~~~~~P~i~f~f~ 297 (395)
T 2qp8_A 220 QDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST-EKFPD-GFWLGEQLVCWQAGTTPWNIFPVISLYLM 297 (395)
T ss_dssp EECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTT-SCCCH-HHHTTCSCEEESTTCCCGGGSCCEEEEEE
T ss_pred EEcccCccccCCceEEEEcCCCcEecCHHHHHHHHHHHhhhccc-ccCCc-cccccccccccccccchHhhCCcEEEEEc
Confidence 99887766555467999999999999999999999999987531 11110 01 1123599776555567999999998
Q ss_pred CCc-----EEEecCCceEEEeCC----CeEEEE--EEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 415 GGV-----DLELDVRGTLVVFSV----SQVCLA--FAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 415 gg~-----~~~l~~~~~~~~~~~----~~~Cl~--~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
|+. +++|++++|+++... ...|++ +.+. .+.||||++|||++|+|||++++|||||+++|+
T Consensus 298 g~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~---~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 369 (395)
T 2qp8_A 298 GEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS---STGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 369 (395)
T ss_dssp CSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEE---SSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred cCCCCceEEEEECHHHhEeecccCCCCCceEEEEEecCC---CCcEEEChHHhCCeeEEEECCCCEEEEEeccCC
Confidence 753 799999999998642 358974 4433 237999999999999999999999999999995
No 24
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=6.3e-54 Score=448.11 Aligned_cols=300 Identities=20% Similarity=0.318 Sum_probs=247.0
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC--CCCCCCCCCCCCCCCCccccccCCChhhhhh
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI--HCSQQRDPFFDPSKSKTFSKIPCNSASCRIL 192 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (478)
..+|+... .+.+|+++|+||||+|++.|++||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 128 ~~~~L~n~--~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~--~~ydps~SsT~~~~---------- 193 (453)
T 2bju_A 128 DNIELVDF--QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTK--HLYDSSKSRTYEKD---------- 193 (453)
T ss_dssp EEEEEEEE--TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGS--CCBCGGGCTTCEEE----------
T ss_pred CceeeEec--CCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCC--CcCCCccCCceeEC----------
Confidence 45677642 6789999999999999999999999999999999997 48654 79999999999886
Q ss_pred hcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCC--CC-C--CCcceEEec
Q 011746 193 RKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNT--SD-Q--NGASGIMGL 267 (478)
Q Consensus 193 ~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~--g~-~--~~~~GilGL 267 (478)
+ |.|.+.|+||+ +.|.+++|+|+|+ +.. ++ +.|||++... +. | ...+|||||
T Consensus 194 ----------~-----~~~~i~YgdGs-~~G~~~~Dtv~ig-~~~-----v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGL 250 (453)
T 2bju_A 194 ----------G-----TKVEMNYVSGT-VSGFFSKDLVTVG-NLS-----LP-YKFIEVIDTNGFEPTYTASTFDGILGL 250 (453)
T ss_dssp ----------E-----EEEEEECSSSE-EEEEEEEEEEEET-TEE-----EE-EEEEEEEECGGGTTHHHHSSCCEEEEC
T ss_pred ----------C-----cEEEEEcCCCC-eEEEEEEEEEEEe-CcE-----EE-EEEEEEEEecccCccccccCCceeEec
Confidence 3 78999999996 8999999999995 444 88 9999999876 53 3 578999999
Q ss_pred CCCCCccc------cccccc------cceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEE
Q 011746 268 DRSPISII------SQTNTS------YFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISV 334 (478)
Q Consensus 268 g~~~~Sl~------sQl~~~------~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~v 334 (478)
|++..+.. .++..+ .||+||++.+...|.|+|||+|+ ++.+++.|+|+.. +.+|.|.++ |+|
T Consensus 251 g~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~l~~~pv~~----~~~w~V~l~-I~V 325 (453)
T 2bju_A 251 GWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNH----DLYWQITLD-AHV 325 (453)
T ss_dssp SCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEEE----ETTEEEEEE-EEE
T ss_pred cCCcccccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCceEEEecCC----CceEEEEEE-EEE
Confidence 99876543 233332 29999998755689999999998 7889999999987 679999999 999
Q ss_pred CCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEc
Q 011746 335 GGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFL 414 (478)
Q Consensus 335 gg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~ 414 (478)
|+ .+ + . ..++||||||++++||+++|++|.+++.+. +...+ .....+|+ . ..+|+|+|+|
T Consensus 326 gg-~~-~--~---~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~----~~~~g--~~~~v~C~-----~-~~~P~itf~f- 385 (453)
T 2bju_A 326 GN-IM-L--E---KANCIVDSGTSAITVPTDFLNKMLQNLDVI----KVPFL--PFYVTLCN-----N-SKLPTFEFTS- 385 (453)
T ss_dssp TT-EE-E--E---EEEEEECTTCCSEEECHHHHHHHTTTSSCE----ECTTS--SCEEEETT-----C-TTCCCEEEEC-
T ss_pred Cc-EE-e--c---cccEEEcCCCCeEecCHHHHHHHHHHhCCc----ccCCC--ceEEEecC-----C-CCCCcEEEEE-
Confidence 99 43 2 2 246999999999999999999998887542 22111 11222465 3 5789999999
Q ss_pred CCcEEEecCCceEEEeC--CCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 415 GGVDLELDVRGTLVVFS--VSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 415 gg~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
||++++|++++|+++.. +...|+ +|.+.+...+.||||++|||++|+|||++++|||||+++
T Consensus 386 gg~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 386 ENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp SSCEEEECHHHHEEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEECHHHhEeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 56999999999999875 356898 788765434589999999999999999999999999874
No 25
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=3.9e-53 Score=438.24 Aligned_cols=312 Identities=21% Similarity=0.331 Sum_probs=247.2
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNC 204 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 204 (478)
....|+++|+||||+|++.|+|||||+++||+|.+| |. .++.|||++|+||+.. +
T Consensus 26 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c--~~--~~~~y~~~~SsT~~~~--------------------~- 80 (402)
T 3vf3_A 26 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PF--LHRYYQRQLSSTYRDL--------------------R- 80 (402)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TT--CSCCCCGGGCTTCEEE--------------------E-
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC--Cc--ccCCcCcccCcccccC--------------------C-
Confidence 346899999999999999999999999999999998 43 2479999999999987 3
Q ss_pred CCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceecc-ceeeeeeecCCCCC---CCcceEEecCCCCCccc-----
Q 011746 205 SSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWY-PFLLGCTNNNTSDQ---NGASGIMGLDRSPISII----- 275 (478)
Q Consensus 205 ~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~-~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl~----- 275 (478)
|.|.+.|++|+ +.|.+++|+|+|++... +. .+.|+|.....+.| ..++||||||+..++..
T Consensus 81 ----~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~-----~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~ 150 (402)
T 3vf3_A 81 ----KGVYVPYTQGK-WEGELGTDLVSIPHGPN-----VTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLE 150 (402)
T ss_dssp ----EEEEEECSSCE-EEEEEEEEEEECTTSCS-----CEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSC
T ss_pred ----CEEEEEECcEE-EEEEEEEEEEEECCccc-----cceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCC
Confidence 78999999995 79999999999964332 33 34588887766554 46799999999876432
Q ss_pred ---cccccc-----cceEeccCC----------CCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECC
Q 011746 276 ---SQTNTS-----YFSYCLPSP----------YGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGG 336 (478)
Q Consensus 276 ---sQl~~~-----~FS~cL~~~----------~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg 336 (478)
.|+..+ .||+||.+. ....|.|+||++|+ ++.+++.|+|+.. +.+|.|.+++|+|++
T Consensus 151 ~~~~~L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g 226 (402)
T 3vf3_A 151 PFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEING 226 (402)
T ss_dssp CHHHHHHHHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECSS----BTTBEECEEEEEETT
T ss_pred cHHHHHHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCCc----CcEEEEEEeEEEECC
Confidence 233322 299999642 23489999999998 8889999999987 679999999999999
Q ss_pred eEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCC--CcccceecCCCcccccCeEEEEEc
Q 011746 337 EKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDED--DFDTCYDLSAYETVVVPKITFHFL 414 (478)
Q Consensus 337 ~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~d~C~~~~~~~~~~~P~i~~~f~ 414 (478)
+.+.++...+....+||||||++++||+++|++|.+++.+.+.. ..... ..+ .+..|+.........+|+|+|+|.
T Consensus 227 ~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~-~~~~~-~~~~~~~~~C~~~~~~~~~~~P~i~f~f~ 304 (402)
T 3vf3_A 227 QDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST-EKFPD-GFWLGEQLVCWQAGTTPWNIFPVISLYLM 304 (402)
T ss_dssp EECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTT-SCCCT-TGGGTCSCEEEETTCCCGGGSCCEEEEEE
T ss_pred EEecccccccCCCeEEEECCCCcccCCHHHHHHHHHHHhhhccc-cccCc-cccccccccccccccchHhhCCceEEEEe
Confidence 99987765554467999999999999999999999999998531 11111 011 134699876555568999999997
Q ss_pred CCc-----EEEecCCceEEEeCC----CeEEEEEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 415 GGV-----DLELDVRGTLVVFSV----SQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 415 gg~-----~~~l~~~~~~~~~~~----~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
|+. +++|++++|+++... ...|++|.... ..+.||||++|||++|+|||++++|||||+++|+
T Consensus 305 g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~-~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 376 (402)
T 3vf3_A 305 GEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ-SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 376 (402)
T ss_dssp CSSTTEEEEEEECHHHHEEECCCGGGTTEEEEEECEEE-ESSCEEECHHHHTTEEEEEEGGGTEEEEEEETTC
T ss_pred cCCCCceEEEEECHHHheehhccCCCCCceEEEEeccC-CCCcEEEChHHhCCeEEEEECCCCEEEEEecccC
Confidence 743 599999999998742 25898643221 1247999999999999999999999999999995
No 26
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=4e-53 Score=446.04 Aligned_cols=318 Identities=23% Similarity=0.365 Sum_probs=249.0
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC---CCCCCCCCCCCCCCCCccccccCCChhhhh
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI---HCSQQRDPFFDPSKSKTFSKIPCNSASCRI 191 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 191 (478)
..+|+... .+.+|+++|+||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 42 ~~~~l~n~--~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~--~~y~~~~SsT~~~~--------- 108 (478)
T 1qdm_A 42 DIVALKNY--MNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLH--SRYKAGASSTYKKN--------- 108 (478)
T ss_dssp CSGGGCCG--GGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGS--CCBCGGGCTTCBCC---------
T ss_pred ceEEeEec--cCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCC--CCCCcccCCCeeeC---------
Confidence 34566542 5789999999999999999999999999999999996 49865 79999999999875
Q ss_pred hhcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecC
Q 011746 192 LRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLD 268 (478)
Q Consensus 192 ~~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg 268 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. ++++.|||++...+. | ..++||||||
T Consensus 109 -----------~-----~~~~i~Yg~Gs-~~G~~~~Dtv~ig-~~~-----v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg 165 (478)
T 1qdm_A 109 -----------G-----KPAAIQYGTGS-IAGYFSEDSVTVG-DLV-----VKDQEFIEATKEPGITFLVAKFDGILGLG 165 (478)
T ss_dssp -----------C-----CEEEEEETTEE-EEEEEEEEEEEET-TEE-----EEEEEEEEEEECCBSHHHHCSSSEEEECS
T ss_pred -----------C-----cEEEEEcCCCC-eEEEEEEEEEEEC-CeE-----ECCEEEEEEEecCCcccccccccceeccc
Confidence 4 78999999995 8999999999994 445 899999999987653 3 5789999999
Q ss_pred CCCCcc----------ccccc--cccceEeccCCC--CCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEE
Q 011746 269 RSPISI----------ISQTN--TSYFSYCLPSPY--GSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGIS 333 (478)
Q Consensus 269 ~~~~Sl----------~sQl~--~~~FS~cL~~~~--~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~ 333 (478)
+..+|. ++|.. ...||+||.+.. ...|.|+||++|+ ++.+++.|+|+.. ..+|.|.+++|+
T Consensus 166 ~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~----~~~w~v~l~~i~ 241 (478)
T 1qdm_A 166 FKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQ----KGYWQFDMGDVL 241 (478)
T ss_dssp CGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEE----ETTEEEEECCEE
T ss_pred ccccccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccC----CCeEEEEEeEEE
Confidence 998763 33322 122999998752 3489999999998 7889999999987 679999999999
Q ss_pred ECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHh----------hcc------------cc--------
Q 011746 334 VGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRM----------MKY------------KK-------- 383 (478)
Q Consensus 334 vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~----------~~~------------~~-------- 383 (478)
||++.+.+... ..++||||||++++||+++|++|.+++.+.. .+| +.
T Consensus 242 v~g~~~~~~~~---~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~ig 318 (478)
T 1qdm_A 242 VGGKSTGFCAG---GCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVG 318 (478)
T ss_dssp ETTEECSTTTT---CEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTT
T ss_pred ECCEEEeecCC---CceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhcccc
Confidence 99998765433 2469999999999999999999999886420 000 00
Q ss_pred ---CCCC------------C--------------------------------------CCCcccceecC---------CC
Q 011746 384 ---TKAD------------D--------------------------------------EDDFDTCYDLS---------AY 401 (478)
Q Consensus 384 ---~~~~------------~--------------------------------------~~~~d~C~~~~---------~~ 401 (478)
..+. . .+..+.|+.++ |.
T Consensus 319 lC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~ 398 (478)
T 1qdm_A 319 LCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCG 398 (478)
T ss_dssp CC---------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGG
T ss_pred ccccCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeecc
Confidence 0000 0 00012344332 33
Q ss_pred cccccCeEEEEEcCCcEEEecCCceEEEeCC--CeEEE-EEEecC---CCCCeeeechhhhcceEEEEeCCCCEEEEeeC
Q 011746 402 ETVVVPKITFHFLGGVDLELDVRGTLVVFSV--SQVCL-AFAIFP---SDPNSISLGNVQQRGYEVHYDVAGRRLGFGPG 475 (478)
Q Consensus 402 ~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 475 (478)
....+|+|+|+| ||++++|+|++|+++.+. ...|+ +|...+ ...+.||||++|||++|+|||++++|||||++
T Consensus 399 ~~~~lP~i~f~~-gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a 477 (478)
T 1qdm_A 399 SLGSMPDIEFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKA 477 (478)
T ss_dssp GGTTCCCEEEEE-TTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccccccEEEEE-CCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeC
Confidence 346799999999 569999999999998753 45898 577543 12358999999999999999999999999987
Q ss_pred C
Q 011746 476 N 476 (478)
Q Consensus 476 ~ 476 (478)
+
T Consensus 478 ~ 478 (478)
T 1qdm_A 478 A 478 (478)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=3.6e-53 Score=426.42 Aligned_cols=301 Identities=22% Similarity=0.293 Sum_probs=244.5
Q ss_pred eeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCC
Q 011746 117 FPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLL 196 (478)
Q Consensus 117 ~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~ 196 (478)
+++... ..+.+|+++|.|| +|++.|+|||||+++||+|.+|..|..+.++.|||++|+ ++..
T Consensus 5 v~~~~~-~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~-------------- 66 (325)
T 1ibq_A 5 AVTTPQ-NNDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSA-TKLS-------------- 66 (325)
T ss_dssp EEEEEC-TTTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSC-EECT--------------
T ss_pred EEeEEc-CCCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcC-CccC--------------
Confidence 444442 2778999999999 999999999999999999999998655566899999998 4422
Q ss_pred CCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC---CCcceEEecCCCCCc
Q 011746 197 PPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ---NGASGIMGLDRSPIS 273 (478)
Q Consensus 197 ~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S 273 (478)
+ |.|.+.|+||+.+.|.+++|+|+|+ +.. ++++.|||++...+.+ ...+||||||+..++
T Consensus 67 ------~-----~~~~i~Yg~Gs~~~G~~~~D~v~ig-~~~-----v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s 129 (325)
T 1ibq_A 67 ------G-----YSWDISYGDGSSASGDVYRDTVTVG-GVT-----TNKQAVEAASKISSEFVQDTANDGLLGLAFSSIN 129 (325)
T ss_dssp ------T-----CBEEEECSSSCEEEEEEEEEEEEET-TEE-----EEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGC
T ss_pred ------C-----CEEEEEeCCCCEEEEEEEEeEEEEC-CEE-----EcceEEEEEEecCccccccCCCceEEEeCccccc
Confidence 3 8999999999879999999999995 445 8999999999876544 468999999998765
Q ss_pred c---------cccccc----ccceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEe
Q 011746 274 I---------ISQTNT----SYFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKL 339 (478)
Q Consensus 274 l---------~sQl~~----~~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l 339 (478)
. ++|+.. ..||+||.+. ..|.|+||++|+ ++.+++.|+|+... ..+|.|++++|+||++.+
T Consensus 130 ~~~p~~~~~~~~~l~~~i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~~~~ 204 (325)
T 1ibq_A 130 TVQPKAQTTFFDTVKSQLDSPLFAVQLKHD--APGVYDFGYIDDSKYTGSITYTDADSS---QGYWGFSTDGYSIGDGSS 204 (325)
T ss_dssp CCBSSCCCCHHHHHGGGSSSSEEEEEEETT--EEEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEECEEEETTSCC
T ss_pred ccCcCCCCCHHHHHHHhcCCcEEEEEecCC--CCceEEECCcChhhccCceEEEEcCCC---CceEEEEECcEEECCeec
Confidence 4 234432 2399999874 579999999998 88999999999752 578999999999999876
Q ss_pred eeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEE
Q 011746 340 PFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDL 419 (478)
Q Consensus 340 ~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~ 419 (478)
. .. ..++||||||++++||+++|++|.+++.++ .+....+ .+.++ |+ ..+|+|+|+| ||+++
T Consensus 205 ~--~~---~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a--~~~~~~g--~~~~~-C~-------~~~P~i~f~f-gg~~~ 266 (325)
T 1ibq_A 205 S--SS---GFSAIADTGTTLILLDDEIVSAYYEQVSGA--QESYEAG--GYVFS-CS-------TDLPDFTVVI-GDYKA 266 (325)
T ss_dssp B--SC---CEEEEECTTCCSEEECHHHHHHHHTTSTTC--BCCSSSS--SCEEE-TT-------CCCCCEEEEE-TTEEE
T ss_pred c--CC---CceEEEeCCCCcEeCCHHHHHHHHHhCCCc--eEcCcCC--eEEEE-cC-------CCCCcEEEEE-CCEEE
Confidence 4 22 246999999999999999999999887543 2332333 44454 75 3689999999 66999
Q ss_pred EecCCceEEEeC--CCeEEEE-EEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 420 ELDVRGTLVVFS--VSQVCLA-FAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 420 ~l~~~~~~~~~~--~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
+|++++|++... +...|++ |.+.+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 267 ~i~~~~~~~~~~~~~~~~C~~~i~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 267 VVPGKYINYAPVSTGSSTCYGGIQSNS-GLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp EECHHHHEEEESSTTCSEEEESEEECT-TTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EECHHHhcccccCCCCCeEEEEEEcCC-CCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 999999998863 3478985 66543 33589999999999999999999999999974
No 28
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=1.7e-53 Score=428.53 Aligned_cols=293 Identities=20% Similarity=0.315 Sum_probs=241.4
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNC 204 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 204 (478)
.+.+|+++|.|| +|++.|+|||||+++||+|.+|..|..+.++.|||++|+ ++.. +
T Consensus 13 ~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~--------------------~- 68 (323)
T 1izd_A 13 NDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSA-QKID--------------------G- 68 (323)
T ss_dssp GGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTC-EEEE--------------------E-
T ss_pred CCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccC-CccC--------------------C-
Confidence 678999999999 899999999999999999999998655556899999998 5432 3
Q ss_pred CCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC---CCcceEEecCCCCCccc------
Q 011746 205 SSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ---NGASGIMGLDRSPISII------ 275 (478)
Q Consensus 205 ~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl~------ 275 (478)
|.|.+.|+||+.+.|.+++|+|+|+ +.. ++++.|||++...+.+ ...+||||||+..++.+
T Consensus 69 ----~~~~i~Yg~Gs~~~G~~~~D~v~ig-~~~-----v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~ 138 (323)
T 1izd_A 69 ----ATWSISYGDGSSASGDVYKDKVTVG-GVS-----YDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQK 138 (323)
T ss_dssp ----EEEEEECTTSCEEEEEEEEEEEEET-TEE-----EEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCC
T ss_pred ----CeEEEEcCCCCeEEEEEEEEEEEEC-CEE-----ECceEEEEEEeccccccccCCCceEEecCcccccccCCCCCC
Confidence 7999999999779999999999994 445 8999999999876544 46899999999876642
Q ss_pred -------cccccccceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCccccc
Q 011746 276 -------SQTNTSYFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT 347 (478)
Q Consensus 276 -------sQl~~~~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~ 347 (478)
+|+....||+||.+. ..|.|+||++|+ ++.+++.|+|+... +.+|.|++++|+||+ .+. ...
T Consensus 139 ~~~~~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~-~~~--~~~-- 208 (323)
T 1izd_A 139 TFFDNVKSSLSEPIFAVALKHN--APGVYDFGYTDSSKYTGSITYTDVDNS---QGFWGFTADGYSIGS-DSS--SDS-- 208 (323)
T ss_dssp CHHHHHGGGSSSSEEEEECCTT--SCEEEEESSCCTTSEEEEEEEEECBCT---TSSCEEEESEEEETT-EEE--CCC--
T ss_pred CHHHHHHHhccCcEEEEEccCC--CCCEEEECCcCccccccceEEEECCCC---CceEEEEECeEEECC-ccc--CCC--
Confidence 343333399999874 579999999998 78899999999752 578999999999999 543 222
Q ss_pred CCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceE
Q 011746 348 KLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTL 427 (478)
Q Consensus 348 ~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 427 (478)
.++||||||++++||+++|++|.+++.++ .+....+ .+.++ |+ ..+|+|+|+| ||++++|++++|+
T Consensus 209 -~~aiiDSGTs~~~lp~~~~~~i~~~i~ga--~~~~~~g--~~~~~-C~-------~~~P~i~f~f-gg~~~~i~~~~~~ 274 (323)
T 1izd_A 209 -ITGIADTGTTLLLLDDSIVDAYYEQVNGA--SYDSSQG--GYVFP-SS-------ASLPDFSVTI-GDYTATVPGEYIS 274 (323)
T ss_dssp -EEEEECTTCCSEEECHHHHHHHHTTSTTC--EEETTTT--EEEEE-TT-------CCCCCEEEEE-TTEEEEECHHHHE
T ss_pred -ceEEEeCCCcceeCCHHHHHHHHHhCCCc--EEcCcCC--EEEEE-CC-------CCCceEEEEE-CCEEEecCHHHeE
Confidence 45999999999999999999999887533 2333333 44454 75 3789999999 6699999999999
Q ss_pred EEeCCCeEEEE-EEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 428 VVFSVSQVCLA-FAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 428 ~~~~~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
+...++..|++ |.+.+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 275 ~~~~~~~~C~~~i~~~~-~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 275 FADVGNGQTFGGIQSNS-GIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp EEECSTTEEEESEEECT-TTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EecCCCCeEEEEEEcCC-CCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 98755678985 76653 33589999999999999999999999999874
No 29
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=6e-53 Score=443.51 Aligned_cols=313 Identities=22% Similarity=0.346 Sum_probs=250.4
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNC 204 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 204 (478)
.+..|+++|+||||+|++.|+|||||+++||+|.+| |.. ++.|||++|+||+.. +
T Consensus 72 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c--c~~--~~~y~~~~SsT~~~~--------------------~- 126 (455)
T 3lpj_A 72 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PFL--HRYYQRQLSSTYRDL--------------------R- 126 (455)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TTC--SCCCCGGGCTTCEEE--------------------E-
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc--ccc--CCcccCCCCCCcccC--------------------C-
Confidence 456899999999999999999999999999999998 533 479999999999987 3
Q ss_pred CCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceecc-ceeeeeeecCCCCC---CCcceEEecCCCCCcc------
Q 011746 205 SSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWY-PFLLGCTNNNTSDQ---NGASGIMGLDRSPISI------ 274 (478)
Q Consensus 205 ~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~-~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl------ 274 (478)
|.|.+.|++|+ +.|.+++|+|+|++... +. .+.|+|.....+.| ..++||||||+..++.
T Consensus 127 ----~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~~-----~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~ 196 (455)
T 3lpj_A 127 ----KGVYVPYTQGK-WEGELGTDLVSIPHGPN-----VTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLE 196 (455)
T ss_dssp ----EEEEEECSSCE-EEEEEEEEEEECTTSCS-----CEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSC
T ss_pred ----ccEEEEeCCeE-EEEEEEEEEEEECCCcc-----eeeEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCC
Confidence 78999999995 69999999999964322 22 36789988776655 4689999999987653
Q ss_pred ------ccccccc-cceEeccCC----------CCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECC
Q 011746 275 ------ISQTNTS-YFSYCLPSP----------YGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGG 336 (478)
Q Consensus 275 ------~sQl~~~-~FS~cL~~~----------~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg 336 (478)
++|.... .||+||.+. ....|.|+||++|+ ++.+++.|+|+.. ..+|.|.+++|+||+
T Consensus 197 ~~~~~L~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g 272 (455)
T 3lpj_A 197 PFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEING 272 (455)
T ss_dssp CHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETT
T ss_pred cHHHHHHHccCCCceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecCC----CceeEEEEeEEEECC
Confidence 2333222 299999753 23579999999998 8889999999987 689999999999999
Q ss_pred eEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCC-CCCCcccceecCCCcccccCeEEEEEcC
Q 011746 337 EKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKAD-DEDDFDTCYDLSAYETVVVPKITFHFLG 415 (478)
Q Consensus 337 ~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~d~C~~~~~~~~~~~P~i~~~f~g 415 (478)
+.+.++...+....+||||||++++||+++|++|.+++.+.+.. ...... ....+..|+.........+|+|+|+|.|
T Consensus 273 ~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~-~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g 351 (455)
T 3lpj_A 273 QDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST-EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMG 351 (455)
T ss_dssp EECCCCGGGGGSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTT-SCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEEC
T ss_pred EEccccccccCCCeEEEECCCcceeCCHHHHHHHHHHhhhhccc-cccCcccccCcceecccccCCchhcCCcEEEEEcC
Confidence 99987766554467999999999999999999999999998531 111100 0011346997765555679999999977
Q ss_pred Cc-----EEEecCCceEEEeCCC----eEEEEEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 416 GV-----DLELDVRGTLVVFSVS----QVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 416 g~-----~~~l~~~~~~~~~~~~----~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
+. +++|++++|+++.... ..|++|.... ..+.||||++|||++|+|||++++|||||+++|+
T Consensus 352 ~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~-~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 422 (455)
T 3lpj_A 352 EVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ-SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 422 (455)
T ss_dssp SSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEE-ESSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred CCcCceEEEEECHHHheEeccCCCCCCceEEEEeccC-CCCcEEEChHHhCCeEEEEECCCCEEEEEecccc
Confidence 43 5999999999987532 5898753321 1247999999999999999999999999999995
No 30
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=2.7e-53 Score=428.27 Aligned_cols=302 Identities=16% Similarity=0.240 Sum_probs=245.0
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC--CCCCCCCCCCCCCCCCccccccCCChhhhhh
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI--HCSQQRDPFFDPSKSKTFSKIPCNSASCRIL 192 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (478)
+..|+... .+.+|+++|.|| +|++.|+|||||+++||+|.+|. .|..+.++.|||++| ||+..
T Consensus 7 ~~~~l~n~--~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~---------- 71 (330)
T 1yg9_A 7 LYKLVHVF--INTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISD---------- 71 (330)
T ss_dssp SCSCEEEE--ECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEE----------
T ss_pred eEeeeecC--CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEEC----------
Confidence 34555542 568999999999 99999999999999999999998 495444589999999 99876
Q ss_pred hcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC--CCcceEEecCCC
Q 011746 193 RKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ--NGASGIMGLDRS 270 (478)
Q Consensus 193 ~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~--~~~~GilGLg~~ 270 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. ++++.|||++.....| ..++||||||+.
T Consensus 72 ----------~-----~~~~i~Yg~Gs-~~G~~~~Dtv~ig-~~~-----~~~~~fg~~~~~~~~f~~~~~~GilGLg~~ 129 (330)
T 1yg9_A 72 ----------G-----NVQVKFFDTGS-AVGRGIEDSLTIS-QLT-----TSQQDIVLADELSQEVCILSADVVVGIAAP 129 (330)
T ss_dssp ----------E-----EEEEEETTTEE-EEEEEEEEEEEET-TEE-----EEEEEEEEEEEECTHHHHTTCSEEEECSCT
T ss_pred ----------C-----CEEEEEECCce-EEEEEEEEEEEEC-CEE-----EcCeEEEEEEEcccccccccCceEEEcCcc
Confidence 3 78999999995 5999999999995 445 8999999999873333 568999999999
Q ss_pred CCc-------cccccccc-----cceEeccCCCCC--ccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEEC
Q 011746 271 PIS-------IISQTNTS-----YFSYCLPSPYGS--TGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVG 335 (478)
Q Consensus 271 ~~S-------l~sQl~~~-----~FS~cL~~~~~~--~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vg 335 (478)
..+ ++.|+..+ .||+||.+..+. .|.|+||++|+ ++.+++.|+|+.. +.+|.|++++|+|+
T Consensus 130 ~~s~~~~~~~~~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~ 205 (330)
T 1yg9_A 130 GCPNALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVG----DDSWKFRLDGVKIG 205 (330)
T ss_dssp TSCCTTSCCCHHHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBSC----TTSCCEECSEEEET
T ss_pred hhccccCCCCHHHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECCC----CCEEEEEeCeEEEC
Confidence 877 33333322 299999876333 89999999998 8889999999985 67999999999999
Q ss_pred CeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCC-CcccceecCCCcccccCeEEEEEc
Q 011746 336 GEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDED-DFDTCYDLSAYETVVVPKITFHFL 414 (478)
Q Consensus 336 g~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~d~C~~~~~~~~~~~P~i~~~f~ 414 (478)
++.+. .. ...+||||||++++||+++|++|++++.+. +.. .+...+ .++ |+ ....+|+|+|+|
T Consensus 206 ~~~~~--~~---~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~~-~g~~~~~~~~-C~-----~~~~~p~i~f~f- 269 (330)
T 1yg9_A 206 DTTVA--PA---GTQAIIDTSKAIIVGPKAYVNPINEAIGCV---VEK-TTTRRICKLD-CS-----KIPSLPDVTFVI- 269 (330)
T ss_dssp TEEEE--CT---TCEEEECTTCSSEEEEHHHHHHHHHHHTCE---EEE-CSSCEEEEEC-GG-----GGGGSCCEEEEE-
T ss_pred CEEEc--CC---CcEEEEecCCccccCCHHHHHHHHHHhCCc---ccC-CCceEEEEEE-CC-----CccccCcEEEEE-
Confidence 98865 21 246999999999999999999999998653 211 110012 333 64 446789999999
Q ss_pred CCcEEEecCCceEEEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 415 GGVDLELDVRGTLVVFSVSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 415 gg~~~~l~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
||++++|++++|+++. +..|+ +|.+.. ..+.||||++|||++|+|||++++|||||+++
T Consensus 270 gg~~~~l~~~~y~~~~--~~~C~~~i~~~~-~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 270 NGRNFNISSQYYIQQN--GNLCYSGFQPCG-HSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp TTEEEEECHHHHEEEE--TTEEEESEEEET-TCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEECHHHhcccC--CCcEEEEEEeCC-CCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 5699999999999987 66898 777653 23579999999999999999999999999874
No 31
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=2.5e-53 Score=427.18 Aligned_cols=292 Identities=20% Similarity=0.299 Sum_probs=239.8
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNC 204 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C 204 (478)
.+.+|+++|.|| +|++.|+|||||+++||+|.+|..|..+.++.|||++|+ ++.. +
T Consensus 13 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~--------------------~- 68 (323)
T 1bxo_A 13 NDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATG-KELS--------------------G- 68 (323)
T ss_dssp GGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHC-EEEE--------------------E-
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCC-cccC--------------------C-
Confidence 678999999999 999999999999999999999998655566899999998 5432 3
Q ss_pred CCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC---CCcceEEecCCCCCccc------
Q 011746 205 SSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ---NGASGIMGLDRSPISII------ 275 (478)
Q Consensus 205 ~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~Sl~------ 275 (478)
|.|.+.|+||+.+.|.+++|+|+|+ +.. ++++.|||++...+.+ ...+||||||+...+.+
T Consensus 69 ----~~~~i~Yg~Gs~~~G~~~~D~v~ig-~~~-----v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~ 138 (323)
T 1bxo_A 69 ----YTWSISYGDGSSASGNVFTDSVTVG-GVT-----AHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQT 138 (323)
T ss_dssp ----EEEEEECTTSCEEEEEEEEEEEEET-TEE-----EEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCC
T ss_pred ----CeEEEEeCCCCeEEEEEEEEEEEEC-CEE-----ECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCC
Confidence 8999999999779999999999995 445 8999999999876544 46899999999876543
Q ss_pred -------cccccccceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCccccc
Q 011746 276 -------SQTNTSYFSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT 347 (478)
Q Consensus 276 -------sQl~~~~FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~ 347 (478)
+|+....||+||.+. ..|.|+||++|+ ++.+++.|+|+... ..+|.|++++|+||+ +. ...
T Consensus 139 ~~~~~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~--~~--~~~-- 207 (323)
T 1bxo_A 139 TFFDTVKSSLAQPLFAVALKHQ--QPGVYDFGFIDSSKYTGSLTYTGVDNS---QGFWSFNVDSYTAGS--QS--GDG-- 207 (323)
T ss_dssp CHHHHHGGGBSSSEEEEECCSS--SCEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEEEEEEETT--EE--EEE--
T ss_pred CHHHHHHHhcCCcEEEEEEeCC--CCceEEEeCcChhhccCceEEEECCCC---CCeEEEEEeeEEECC--cc--CCC--
Confidence 333223399999874 579999999998 88999999999752 578999999999999 21 221
Q ss_pred CCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceE
Q 011746 348 KLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTL 427 (478)
Q Consensus 348 ~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 427 (478)
.++||||||++++||++++++|.+++.++ .+....+ .+.++ |+ ..+|+|+|+| ||++++|++++|+
T Consensus 208 -~~aiiDSGTs~~~lP~~~~~~l~~~i~~a--~~~~~~g--~~~~~-C~-------~~~P~i~f~f-gg~~~~l~~~~~~ 273 (323)
T 1bxo_A 208 -FSGIADTGTTLLLLDDSVVSQYYSQVSGA--QQDSNAG--GYVFD-CS-------TNLPDFSVSI-SGYTATVPGSLIN 273 (323)
T ss_dssp -EEEEECTTCSSEEECHHHHHHHHTTSTTC--EEETTTT--EEEEC-TT-------CCCCCEEEEE-TTEEEEECHHHHE
T ss_pred -ceEEEeCCCCceeCCHHHHHHHHHhCCCc--eEcCcCC--EEEEE-CC-------CCCceEEEEE-CCEEEEECHHHeE
Confidence 45999999999999999999999888543 2333333 34444 75 4789999999 6699999999999
Q ss_pred EEeC-CCeEEEE-EEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 428 VVFS-VSQVCLA-FAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 428 ~~~~-~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
+... +...|++ |.+.+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 274 ~~~~~~~~~C~~~i~~~~-~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 274 YGPSGDGSTCLGGIQSNS-GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp EEECSSSSCEEESEEECT-TCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EeccCCCCeEEEEEECCC-CCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 8874 3478985 66653 33589999999999999999999999999974
No 32
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=6e-53 Score=441.13 Aligned_cols=299 Identities=19% Similarity=0.310 Sum_probs=247.5
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC--CCCCCCCCCCCCCCCCccccccCCChhhhhh
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI--HCSQQRDPFFDPSKSKTFSKIPCNSASCRIL 192 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (478)
..+|+... .+.+|+++|+||||+|++.|++||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 127 ~~~pL~n~--~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~--~~ydps~SsT~~~~---------- 192 (451)
T 3qvc_A 127 DNVELKDL--ANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESK--NHYDSSKSKTYEKD---------- 192 (451)
T ss_dssp CCCCGGGG--BCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTS--CCBCGGGCTTCEEE----------
T ss_pred Cccceeec--CCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCC--CCCCCCCCcccccC----------
Confidence 45566543 6789999999999999999999999999999999996 48654 79999999999876
Q ss_pred hcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeec----CCCCC--CCcceEEe
Q 011746 193 RKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNN----NTSDQ--NGASGIMG 266 (478)
Q Consensus 193 ~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~----~~g~~--~~~~GilG 266 (478)
+ |.|.+.|+||+ +.|.+++|+|+|+ +.. ++ +.|||++. ..+ | ...+||||
T Consensus 193 ----------~-----~~f~i~YgdGs-~~G~~~~Dtv~ig-g~~-----v~-~~Fg~a~~t~~~~~~-f~~~~~dGILG 248 (451)
T 3qvc_A 193 ----------D-----TPVKLTSKAGT-ISGIFSKDLVTIG-KLS-----VP-YKFIEMTEIVGFEPF-YSESDVDGVFG 248 (451)
T ss_dssp ----------E-----EEEEEECSSEE-EEEEEEEEEEEET-TEE-----EE-EEEEEEEEEEECTTH-HHHSCCCEEEE
T ss_pred ----------C-----CEEEEEECCCE-EEEEEEEEEEEEC-CEE-----EE-EEEEEEEeccccCCC-ccCCCCCEEEe
Confidence 3 78999999996 9999999999994 445 88 99999998 655 5 56899999
Q ss_pred cCCCCCc------ccccccccc------ceEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEE
Q 011746 267 LDRSPIS------IISQTNTSY------FSYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGIS 333 (478)
Q Consensus 267 Lg~~~~S------l~sQl~~~~------FS~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~ 333 (478)
||++..+ ++.++..++ ||+||.+.....|.|+|||+|+ ++.+++.|+|+.. +.+|.|.++ |+
T Consensus 249 Lg~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~l~~~pv~~----~~~w~v~l~-I~ 323 (451)
T 3qvc_A 249 LGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLNH----DLMWQVDLD-VH 323 (451)
T ss_dssp CSSBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEECSS----TTSSEEEEE-EE
T ss_pred cCCCcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCceEEEEccc----CCeeEEEEE-EE
Confidence 9998754 344444432 9999998866689999999998 8889999999986 689999999 99
Q ss_pred ECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEE
Q 011746 334 VGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHF 413 (478)
Q Consensus 334 vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f 413 (478)
||++ . .. ...+||||||++++||++++++|.+++.+. +....+ +|.++|. ...+|+|+|+|
T Consensus 324 Vgg~-~---~~---~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~---~~~~~g--------~y~v~C~-~~~~P~itf~f 384 (451)
T 3qvc_A 324 FGNV-S---SK---KANVILDSATSVITVPTEFFNQFVESASVF---KVPFLS--------LYVTTCG-NTKLPTLEYRS 384 (451)
T ss_dssp ETTE-E---EE---EEEEEECTTBSSEEECHHHHHHHHTTTTCE---ECTTSS--------CEEEETT-CTTCCCEEEEE
T ss_pred ECCc-c---CC---CceEEEeCCCccccCCHHHHHHHHHHcCCe---ecCCCC--------eEEeeCC-cCcCCcEEEEE
Confidence 9998 1 11 145999999999999999999999888654 222223 3333444 46789999999
Q ss_pred cCCcEEEecCCceEEEeC--CCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 414 LGGVDLELDVRGTLVVFS--VSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 414 ~gg~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
+ |++++|++++|+++.. +...|+ ++.+.+...+.||||++|||++|+|||.+++|||||+++
T Consensus 385 g-g~~i~lp~~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 385 P-NKVYTLEPKQYLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp T-TEEEEECHHHHEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred C-CEEEEEcHHHheeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 5 5999999999999874 357898 677665324589999999999999999999999999974
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=3.4e-52 Score=421.79 Aligned_cols=297 Identities=20% Similarity=0.311 Sum_probs=238.7
Q ss_pred eeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhc
Q 011746 115 FQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRK 194 (478)
Q Consensus 115 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~ 194 (478)
.++|+.. .+..|+++|.||||+|++.|+|||||+++||+|. +.|||++|+++.
T Consensus 3 ~~~~l~n---~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~----------~~y~~s~Ss~~~-------------- 55 (340)
T 1wkr_A 3 GSVPATN---QLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD----------KSYVKTSTSSAT-------------- 55 (340)
T ss_dssp EEEEEEE---CSSCEEEEEEETTTTEEEEEEEETTCCCCEECSS----------SCCCCCTTCEEE--------------
T ss_pred ccEeeec---cCcEEEEEEEECCCCcEEEEEEeCCChhheecCC----------CccCCcCCcccc--------------
Confidence 3577776 4579999999999999999999999999999875 489999887542
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCCCCcceEEecCCCCCcc
Q 011746 195 LLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISI 274 (478)
Q Consensus 195 ~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~Sl 274 (478)
+ |.|.+.|++|+ ++|.+++|+|+|+ +.. ++++.|||++...+ |..++||||||+..+++
T Consensus 56 --------~-----~~~~i~Yg~Gs-~~G~~~~Dtv~~g-~~~-----v~~~~fg~~~~~~~-~~~~~GilGLg~~~~s~ 114 (340)
T 1wkr_A 56 --------S-----DKVSVTYGSGS-FSGTEYTDTVTLG-SLT-----IPKQSIGVASRDSG-FDGVDGILGVGPVDLTV 114 (340)
T ss_dssp --------E-----EEEEEECSSCE-EEEEEEEEEEEET-TEE-----EEEEEEEEEEEEES-CTTCSEEEECSCGGGGT
T ss_pred --------C-----ceEEEEECCcE-EEEEEEEEEEEEC-CEE-----EcceEEEEEEccCC-CcCCCcEEECCcccccc
Confidence 2 78999999995 8999999999994 445 89999999998766 56789999999987664
Q ss_pred --------------ccccccc------cceEeccCC---CCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEe
Q 011746 275 --------------ISQTNTS------YFSYCLPSP---YGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITIT 330 (478)
Q Consensus 275 --------------~sQl~~~------~FS~cL~~~---~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~ 330 (478)
+.++..+ .||+||.+. ....|.|+||++|+ ++.+++.|+|+..++....+|.|. .
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~ 193 (340)
T 1wkr_A 115 GTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-Q 193 (340)
T ss_dssp TSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-E
T ss_pred ccccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-e
Confidence 2333322 299999864 23479999999998 889999999998865446799999 9
Q ss_pred EEEECC-eEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeE
Q 011746 331 GISVGG-EKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKI 409 (478)
Q Consensus 331 gi~vgg-~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i 409 (478)
+|+|++ +.+..+ +++||||||++++||+++|++|.+++.+. +....+ .+.++ |. ....+|+|
T Consensus 194 ~i~v~~~~~l~~~------~~aiiDSGTt~~~lP~~~~~~l~~~~~a~---~~~~~g--~~~~~-C~-----~~~~~p~i 256 (340)
T 1wkr_A 194 SIRYGSSTSILSS------TAGIVDTGTTLTLIASDAFAKYKKATGAV---ADNNTG--LLRLT-TA-----QYANLQSL 256 (340)
T ss_dssp EEEETTTEEEEEE------EEEEECTTBCSEEECHHHHHHHHHHHTCE---ECTTTS--SEEEC-HH-----HHHTCCCE
T ss_pred eEEECCCeEccCC------CeEEEeCCcccccCCHHHHHHHHHhhCCE---EcCCCC--eEEee-cc-----ccccCCcE
Confidence 999998 877421 35999999999999999999998887654 222222 23333 53 44678999
Q ss_pred EEEEcCCcEEEecCCceEEEeC-------CCeEEE-EEEecCC---CCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746 410 TFHFLGGVDLELDVRGTLVVFS-------VSQVCL-AFAIFPS---DPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS 478 (478)
Q Consensus 410 ~~~f~gg~~~~l~~~~~~~~~~-------~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 478 (478)
+|+|. |++++|++++|+++.. ....|+ +|.+... .+..||||++|||++|+|||++++|||||+++|+
T Consensus 257 ~f~f~-g~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 335 (340)
T 1wkr_A 257 FFTIG-GQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFT 335 (340)
T ss_dssp EEEET-TEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTT
T ss_pred EEEEC-CEEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCC
Confidence 99995 5999999999998753 124675 7776431 2246999999999999999999999999999985
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=2.1e-41 Score=326.05 Aligned_cols=218 Identities=23% Similarity=0.369 Sum_probs=183.8
Q ss_pred eeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC---CCCCCCCCCCCCCCCCccccccCCChhhhhh
Q 011746 116 QFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI---HCSQQRDPFFDPSKSKTFSKIPCNSASCRIL 192 (478)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 192 (478)
.+|+... .+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 4 ~~~l~n~--~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~---------- 69 (239)
T 1b5f_A 4 VVALTND--RDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAH--SMYESSDSSTYKEN---------- 69 (239)
T ss_dssp EEEEEEE--TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTS--CCBCGGGCTTCEEE----------
T ss_pred eeeeeec--CCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCC--CCCCCccCCCeeeC----------
Confidence 3666653 6789999999999999999999999999999999997 48765 79999999999876
Q ss_pred hcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCC-C--CCcceEEecCC
Q 011746 193 RKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSD-Q--NGASGIMGLDR 269 (478)
Q Consensus 193 ~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~ 269 (478)
+ |.|.+.|++|+ +.|.+++|+|+|+ +.. ++++.|||++...+. | ..++||||||+
T Consensus 70 ----------~-----~~~~i~Yg~Gs-~~G~~~~D~v~~g-~~~-----v~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 127 (239)
T 1b5f_A 70 ----------G-----TFGAIIYGTGS-ITGFFSQDSVTIG-DLV-----VKEQDFIEATDEADNVFLHRLFDGILGLSF 127 (239)
T ss_dssp ----------E-----EEEEEECSSCE-EEEEEEEEEEEET-TEE-----EEEEEEEEEEEECHHHHTTCSCCEEEECSC
T ss_pred ----------C-----cEEEEEECCCc-EEEEEEEEEEEEC-CcE-----EccEEEEEEEeccCccccccCcceEEecCc
Confidence 3 78999999995 8999999999994 445 899999999986542 2 56899999999
Q ss_pred CCCc------ccccccc--ccceEeccCCC--CCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeE
Q 011746 270 SPIS------IISQTNT--SYFSYCLPSPY--GSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEK 338 (478)
Q Consensus 270 ~~~S------l~sQl~~--~~FS~cL~~~~--~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~ 338 (478)
..++ +++|... ..||+||++.. ...|.|+||++|+ ++.+++.|+|+.. ..+|.|+|++|+|+++.
T Consensus 128 ~~~s~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~ 203 (239)
T 1b5f_A 128 QTISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTY----QYYWQFGIGDVLIGDKS 203 (239)
T ss_dssp CSSSCCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEE----ETTEEEEECCEEETTEE
T ss_pred cccccHHHHHHHHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEccc----CCeEEEEeeEEEECCEE
Confidence 9887 3444322 22999998752 3589999999998 7889999999987 57999999999999998
Q ss_pred eeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHH
Q 011746 339 LPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRK 376 (478)
Q Consensus 339 l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~ 376 (478)
+.+.... .++||||||++++||+++|++|.+++.+
T Consensus 204 ~~~~~~~---~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 204 TGFCAPG---CQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp CCTTTTC---EEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred ecccCCC---CEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 7654432 4699999999999999999999988753
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=6.4e-36 Score=287.96 Aligned_cols=215 Identities=20% Similarity=0.296 Sum_probs=171.8
Q ss_pred eeccceeeeeeecCCCC-C--CCcceEEecCCCCCcc------ccccccc------cceEeccCCCCC--ccEEEeCCCC
Q 011746 241 FSWYPFLLGCTNNNTSD-Q--NGASGIMGLDRSPISI------ISQTNTS------YFSYCLPSPYGS--TGYITFGRPD 303 (478)
Q Consensus 241 ~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl------~sQl~~~------~FS~cL~~~~~~--~G~L~fG~~d 303 (478)
+.++++.|||++...+. | ..++||||||+..++. +.|+..+ .||+||.+.... .|.|+||++|
T Consensus 3 ~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d 82 (241)
T 1lya_B 3 VKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTD 82 (241)
T ss_dssp EEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCC
T ss_pred eEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCcC
Confidence 34899999999998763 4 4789999999987653 3344332 299999987443 8999999999
Q ss_pred C-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhhccc
Q 011746 304 A-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYK 382 (478)
Q Consensus 304 ~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~~~~ 382 (478)
+ ++.+++.|+|+.. +.+|.|++++|+|+++.+... . ...+||||||++++||+++|++|.+++.+. +.
T Consensus 83 ~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~-~---~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~---~~ 151 (241)
T 1lya_B 83 SKYYKGSLSYLNVTR----KAYWQVHLDQVEVASGLTLCK-E---GCEAIVDTGTSLMVGPVDEVRELQKAIGAV---PL 151 (241)
T ss_dssp GGGEEEEEEEEECSS----BTTBEEEEEEEEETTSCEEST-T---CEEEEECTTCSSEEECHHHHHHHHHHHTCE---EE
T ss_pred HHHcCCceEEEECcc----ccEEEEEEeEEEECCeeEecc-C---CCEEEEECCCccccCCHHHHHHHHHHhCCe---ec
Confidence 8 8889999999986 679999999999999875321 1 245999999999999999999999988654 21
Q ss_pred cCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceEEEeCC--CeEEE-EEEecCC---CCCeeeechhhh
Q 011746 383 KTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSV--SQVCL-AFAIFPS---DPNSISLGNVQQ 456 (478)
Q Consensus 383 ~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~--~~~Cl-~~~~~~~---~~~~~IlG~~fl 456 (478)
..+ .+.++ |+ ....+|+|+|+| ||++++|++++|+++... ...|+ +|.+.+. ..+.||||++||
T Consensus 152 -~~g--~~~~~-C~-----~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl 221 (241)
T 1lya_B 152 -IQG--EYMIP-CE-----KVSTLPAITLKL-GGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFI 221 (241)
T ss_dssp -ETT--EEEEE-GG-----GGGGSCCEEEEE-TTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHH
T ss_pred -cCC--cEEEE-CC-----CCccCCeEEEEE-CCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHh
Confidence 223 34443 75 346789999999 569999999999998752 56898 6877531 245899999999
Q ss_pred cceEEEEeCCCCEEEEeeCC
Q 011746 457 RGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 457 ~~~~vvfD~~~~rIGFa~~~ 476 (478)
|++|+|||++++|||||+++
T Consensus 222 ~~~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 222 GRYYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp TTEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEECCCCEEEEEEcC
Confidence 99999999999999999874
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.87 E-value=2.5e-22 Score=165.28 Aligned_cols=89 Identities=26% Similarity=0.467 Sum_probs=79.1
Q ss_pred eeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC----CCCCCCCCCCCCCCCCccccccCCChhhhh
Q 011746 116 QFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCI----HCSQQRDPFFDPSKSKTFSKIPCNSASCRI 191 (478)
Q Consensus 116 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 191 (478)
.+|+... .+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 4 ~~~l~n~--~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~--~~y~p~~SsT~~~~--------- 70 (97)
T 1lya_A 4 PEVLKNY--MDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIH--HKYNSDKSSTYVKN--------- 70 (97)
T ss_dssp EEEEEEE--TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTS--CCBCGGGCTTCEEE---------
T ss_pred eEeeEEC--CCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCC--CCCCchhCCCceeC---------
Confidence 4566542 6789999999999999999999999999999999997 48764 79999999999987
Q ss_pred hhcCCCCCCCCCCCCCCCCceeecCCCCceeeEEEEEEEEEcc
Q 011746 192 LRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQE 234 (478)
Q Consensus 192 ~~~~~~~~~~~~C~~~~c~~~~~Ygdgs~~~G~~~~Dtltl~~ 234 (478)
+ |.|.+.|++|+ +.|.+++|+|+|++
T Consensus 71 -----------~-----~~~~i~Yg~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 71 -----------G-----TSFDIHYGSGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp -----------E-----EEEEEECSSCE-EEEEEEEEEEEESC
T ss_pred -----------C-----CcEEEEECCcE-EEEEEEEEEEEECC
Confidence 3 78999999996 89999999999954
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.63 E-value=5.6e-16 Score=124.73 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=62.3
Q ss_pred cccccCeEEEEEcCCcEEEecCCceEEEeCC--CeEEE-EEEecC--CCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746 402 ETVVVPKITFHFLGGVDLELDVRGTLVVFSV--SQVCL-AFAIFP--SDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN 476 (478)
Q Consensus 402 ~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~--~~~Cl-~~~~~~--~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 476 (478)
....+|+|+|+| ||++++|++++|+++... ...|+ +|.+.+ ...+.||||++|||++|+|||.+++|||||+++
T Consensus 9 ~~~~~P~i~f~~-gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~riGfA~~~ 87 (87)
T 1b5f_B 9 TLSSMPNVSFTI-GGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 87 (87)
T ss_dssp GGGGCCCEEEEE-TTEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CCCcCCcEEEEE-CCEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCCEEEEEEcC
Confidence 446799999999 569999999999998742 46898 687653 233589999999999999999999999999864
No 38
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=88.20 E-value=2.2 Score=36.33 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=24.1
Q ss_pred eeeechhhhcceEEEEeCCCCEEEEe
Q 011746 448 SISLGNVQQRGYEVHYDVAGRRLGFG 473 (478)
Q Consensus 448 ~~IlG~~fl~~~~vvfD~~~~rIGFa 473 (478)
..|||..||+.+-+..|..+++|-|.
T Consensus 109 d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 109 DVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEEET
T ss_pred CeEecHHHHhhCCEEEECCCCEEEEc
Confidence 48999999999999999999999885
No 39
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=87.37 E-value=1.8 Score=37.31 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=61.1
Q ss_pred cEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHHHHHHHHHHHHHHhh-ccc-cCCCCCCCCcccceecCCC
Q 011746 324 YYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMM-KYK-KTKADDEDDFDTCYDLSAY 401 (478)
Q Consensus 324 ~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~~d~C~~~~~~ 401 (478)
.++|+ ..|+|+.+. +++|||.+.+.++.+..+.+-- ..... .+. .+.+ .... .+
T Consensus 24 ~l~v~---~~Ing~~v~----------~LVDTGAs~s~Is~~~A~rlGL--~~~~~~~~~~~a~g--~G~~-~~------ 79 (148)
T 3s8i_A 24 MLYIN---CKVNGHPLK----------AFVDSGAQMTIMSQACAERCNI--MRLVDRRWAGVAKG--VGTQ-RI------ 79 (148)
T ss_dssp CCEEE---EEETTEEEE----------EEECTTCSSCEEEHHHHHHTTC--GGGEEGGGCEECCC-----C-EE------
T ss_pred EEEEE---EEECCEEEE----------EEEeCCCCcEeeCHHHHHHcCC--ccccCcceeEEEEc--CCcc-EE------
Confidence 34555 457888653 9999999999999998887621 00000 000 0011 0000 01
Q ss_pred cccccCeEEEEEcCCcEEEecCCceEEEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEeCCCCEEEEee
Q 011746 402 ETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCL-AFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGP 474 (478)
Q Consensus 402 ~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 474 (478)
...++...+.+ |+..+ .|- .+.+. ..-..|||..+|+.+-.+.|++++++-|..
T Consensus 80 -~g~v~~~~I~I-g~~~~---------------~~~~~Vle~--~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~ 134 (148)
T 3s8i_A 80 -IGRVHLAQIQI-EGDFL---------------QCSFSILED--QPMDMLLGLDMLRRHQCSIDLKKNVLVIGT 134 (148)
T ss_dssp -EEEEEEEEEEE-TTEEE---------------EEEEEEETT--CSSSEEECHHHHHHTTCEEETTTTEEECTT
T ss_pred -EEEEEEEEEEE-CCEEE---------------EEEEEEeCC--CCcCeeccHHHHHhCCEEEEcCCCEEEEcc
Confidence 01223344454 22221 132 22222 122589999999999999999999998865
No 40
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=82.53 E-value=1.5 Score=35.13 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=24.5
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCCC
Q 011746 130 YIVVAIGEPKQYVSLLLDTGSDLTWTQCKP 159 (478)
Q Consensus 130 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 159 (478)
+++|.|| +|.+.+++|||.|++-+.-..
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~~ 37 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEMS 37 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCCS
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEeccc
Confidence 5778999 899999999999999987554
No 41
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=82.32 E-value=1.3 Score=35.88 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.4
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeee
Q 011746 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQ 156 (478)
Q Consensus 129 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~ 156 (478)
-+++|.|| +|.+.+++|||.|++-+.
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLT 34 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEc
Confidence 35789999 899999999999999887
No 42
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=78.40 E-value=2.5 Score=33.76 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=24.2
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCCC
Q 011746 130 YIVVAIGEPKQYVSLLLDTGSDLTWTQCKP 159 (478)
Q Consensus 130 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 159 (478)
++++.|| +|.+.+++|||.|++-+.-..
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~~ 37 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGIE 37 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSCC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCcc
Confidence 5678999 999999999999999986543
No 43
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=74.59 E-value=2.7 Score=35.74 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=26.8
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeee
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQ 156 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~ 156 (478)
..+.+++++.|+ ++++.+++|||++.+-+.
T Consensus 23 ~~~~~~v~v~In--G~~~~~LvDTGAs~s~is 52 (148)
T 2i1a_A 23 QVPMLYINIEIN--NYPVKAFVDTGAQTTIMS 52 (148)
T ss_dssp CCCCCEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred ccceEEEEEEEC--CEEEEEEEECCCCccccC
Confidence 567899999998 899999999999998775
No 44
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=72.36 E-value=3.1 Score=33.96 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=25.4
Q ss_pred EEEEEeC---CCCcEEEEEEEcCCCceeeeCCCC
Q 011746 130 YIVVAIG---EPKQYVSLLLDTGSDLTWTQCKPC 160 (478)
Q Consensus 130 ~~~v~iG---tP~q~~~v~~DTGS~~~Wv~c~~C 160 (478)
.++|.|| +|+|....++|||.|++-+.-..+
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~l 45 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALF 45 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGS
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccC
Confidence 4556665 889999999999999999986654
No 45
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=71.80 E-value=3.4 Score=33.99 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.7
Q ss_pred EEeCCCCcEEEEEEEcCCCceeeeCC
Q 011746 133 VAIGEPKQYVSLLLDTGSDLTWTQCK 158 (478)
Q Consensus 133 v~iGtP~q~~~v~~DTGS~~~Wv~c~ 158 (478)
|.|| +|.+.+++|||.|++-+.-.
T Consensus 18 ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 18 IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred EEEC--CEEEEEEecCCCCcEEEccc
Confidence 8999 89999999999999988743
No 46
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=66.31 E-value=5.8 Score=32.43 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=24.8
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCCCC
Q 011746 130 YIVVAIGEPKQYVSLLLDTGSDLTWTQCKPC 160 (478)
Q Consensus 130 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C 160 (478)
.+.+.|| +|.+..++|||.|++-+.-...
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~l 39 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLEDW 39 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGGGS
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEecccC
Confidence 5678899 8999999999999999976543
No 47
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=61.19 E-value=7.2 Score=33.40 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=26.6
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeC
Q 011746 125 AVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQC 157 (478)
Q Consensus 125 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c 157 (478)
....|++++.|. ++++.+++|||++.+.+.-
T Consensus 21 ~~~~l~v~~~In--g~~v~~LVDTGAs~s~Is~ 51 (148)
T 3s8i_A 21 QVTMLYINCKVN--GHPLKAFVDSGAQMTIMSQ 51 (148)
T ss_dssp -CCCCEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred ccCEEEEEEEEC--CEEEEEEEeCCCCcEeeCH
Confidence 456789999998 8999999999999988854
No 48
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=55.10 E-value=11 Score=29.60 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=27.0
Q ss_pred eeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHH
Q 011746 313 TPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSP 365 (478)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~ 365 (478)
.||... ....|.++ |.||. |+..|. ++||||+..+++|..
T Consensus 5 ~~l~n~--~~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~ 44 (97)
T 1lya_A 5 EVLKNY--MDAQYYGE---IGIGT-----PPQCFT---VVFDTGSSNLWVPSI 44 (97)
T ss_dssp EEEEEE--TTTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred EeeEEC--CCCeEEEE---EEECC-----CCeEEE---EEEeCCCCceEEeEc
Confidence 566432 14567765 67773 333344 999999999999865
No 49
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=51.73 E-value=14 Score=30.61 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.1
Q ss_pred eCCCCcEEEEEEEcCCCceeeeCCCC
Q 011746 135 IGEPKQYVSLLLDTGSDLTWTQCKPC 160 (478)
Q Consensus 135 iGtP~q~~~v~~DTGS~~~Wv~c~~C 160 (478)
|| +|.+.+++|||.|++-+.-...
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~l 50 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEEDW 50 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTTS
T ss_pred CC--CEEEEEEecCCCCcEEEecccC
Confidence 66 7888999999999999986543
No 50
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=51.52 E-value=17 Score=30.50 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=25.0
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceeeeCCC
Q 011746 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKP 159 (478)
Q Consensus 128 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 159 (478)
.-++.+.|+ +|...+++|||.+.+-+.-..
T Consensus 22 RP~v~i~I~--G~~~~~LlDTGAd~tVl~~~~ 51 (132)
T 3slz_A 22 EPRITLKVG--GQPVTFLVDTGAQHSVLTQNP 51 (132)
T ss_dssp SSEEEEEET--TEEEEEEECTTCSSCEECSCC
T ss_pred CCEEEEEEC--CEEEEEEEeCCCCeEEEcccc
Confidence 346778899 899999999999999887543
No 51
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=49.97 E-value=13 Score=33.54 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=23.8
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeC
Q 011746 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQC 157 (478)
Q Consensus 129 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c 157 (478)
-.++|.|| +|.+.+++|||.|++-+.-
T Consensus 9 P~vtv~I~--Gq~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 9 PLVTIRIG--GQLKEALLDTGADDTVIEE 35 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CeEEEEEC--CEEEEEEEecCCCceEEec
Confidence 36789999 9999999999999998864
No 52
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=36.81 E-value=30 Score=33.11 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=23.9
Q ss_pred CccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHHH
Q 011746 322 SEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPI 366 (478)
Q Consensus 322 ~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~ 366 (478)
...|.++ |.||.++ |. ++||||++.+++|..-
T Consensus 14 ~~~Y~~~---i~iG~Q~-------~~---v~~DTGSs~lWv~~~~ 45 (323)
T 1bxo_A 14 DEEYITP---VTIGGTT-------LN---LNFDTGSADLWVFSTE 45 (323)
T ss_dssp GSCEEEE---EEETTEE-------EE---EEEETTCCCEEECBTT
T ss_pred CCEEEEE---EEECCEE-------EE---EEEeCCCcceEEecCC
Confidence 4567765 7788443 32 9999999999999754
No 53
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=33.73 E-value=53 Score=31.88 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHH
Q 011746 307 SKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSP 365 (478)
Q Consensus 307 ~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~ 365 (478)
.+.+...|+.... ...|.++ |.||. |+..|. ++||||++.+++|..
T Consensus 4 ~g~~~~~~l~~~~--~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 4 DGSVDTPGLYDFD--LEEYAIP---VSIGT-----PGQDFY---LLFDTGSSDTWVPHK 49 (361)
T ss_dssp -CCEEEEEEEETT--TTEEEEE---EEETT-----TTEEEE---EEEETTCCCCEEEBT
T ss_pred CCccceEEeecCC--CCEEEEE---EEECC-----CCcEEE---EEEcCCCCCeEECCC
Confidence 3566677887632 4567765 67773 233343 999999999999865
No 54
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=32.31 E-value=38 Score=32.42 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=23.8
Q ss_pred CccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHHH
Q 011746 322 SEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPI 366 (478)
Q Consensus 322 ~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~ 366 (478)
...|.++ |.||.+. |. ++||||++.+++|..-
T Consensus 14 ~~~Y~~~---i~iG~q~-------~~---v~~DTGSs~lWv~~~~ 45 (323)
T 1izd_A 14 DEEYITQ---VTVGDDT-------LG---LDFDTGSADLWVFSSQ 45 (323)
T ss_dssp GCCEEEE---EEETTEE-------EE---EEEETTCCCEEECBTT
T ss_pred CCEEEEE---EEECCEE-------EE---EEEcCCCcceEEecCC
Confidence 4567765 7788433 33 9999999999999764
No 55
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=31.41 E-value=37 Score=32.43 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=29.4
Q ss_pred CceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHH
Q 011746 309 FIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSP 365 (478)
Q Consensus 309 ~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~ 365 (478)
+....||.... ...|.++ |.||. |+..|. ++||||++.+++|..
T Consensus 2 ~~~~~~l~n~~--~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 45 (323)
T 3cms_A 2 EVASVPLTNYL--DSQYFGK---IYLGT-----PPQEFT---VLFDTGSSDFWVPSI 45 (323)
T ss_dssp CCEEEEEEEET--TTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred CcceeeeEecc--CCEEEEE---EEECC-----CCeEEE---EEEeCCccceEEcCC
Confidence 34456665522 4567765 67774 333344 999999999999875
No 56
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=30.91 E-value=37 Score=32.53 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=24.2
Q ss_pred CccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHHHH
Q 011746 322 SEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIY 367 (478)
Q Consensus 322 ~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~~~ 367 (478)
...|.++ |.||.++ |. ++||||++.+++|..-.
T Consensus 13 ~~~Y~~~---i~iG~Q~-------~~---v~~DTGSs~lWv~~~~C 45 (325)
T 1ibq_A 13 DEEYLTP---VTVGKST-------LH---LDFDTGSADLWVFSDEL 45 (325)
T ss_dssp TSCEEEE---EEEBTEE-------EE---EEEETTCCCEEEECTTS
T ss_pred CCEEEEE---EEECCEE-------EE---EEEeCCCccceEeeCCC
Confidence 5567765 6778443 32 99999999999987543
No 57
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=29.49 E-value=44 Score=30.09 Aligned_cols=28 Identities=36% Similarity=0.376 Sum_probs=23.9
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 011746 129 YYIVVAIGEPKQYVSLLLDTGSDLTWTQCK 158 (478)
Q Consensus 129 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 158 (478)
=.+++.|| +|....++|||.|++-+...
T Consensus 113 P~~~iki~--Gq~~e~LlDTGAD~TVl~~~ 140 (203)
T 3ka2_A 113 PLVTIRIG--GQLKEALLDTGADDTVIEEL 140 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CcEEEEEC--CEEEeeeecccCCceeeecc
Confidence 36788999 89999999999999988543
No 58
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=27.19 E-value=55 Score=32.65 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=32.0
Q ss_pred CceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHH
Q 011746 309 FIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSP 365 (478)
Q Consensus 309 ~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~ 365 (478)
.-...|+..+.. ...|.++ |.||. |+..|. ++||||+.++++|-+
T Consensus 7 ~~~~~pv~~d~~-~~~Y~~~---i~iGT-----Ppq~~~---v~~DTGS~~lWv~c~ 51 (413)
T 3vla_A 7 SALVVPVKKDAS-TLQYVTT---INQRT-----PLVSEN---LVVDLGGRFLWVDCD 51 (413)
T ss_dssp SEEEEEEEECTT-TCCEEEE---EEETT-----TTEEEE---EEEETTCSSEEEECS
T ss_pred ccEEEEeeecCC-CCeEEEE---EEcCC-----CCcceE---EEEeCCChhhhcccC
Confidence 345588888653 5567766 56664 444454 999999999999863
No 59
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=24.58 E-value=48 Score=30.17 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=26.6
Q ss_pred eeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHH
Q 011746 313 TPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSP 365 (478)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~ 365 (478)
.||.... ...|.++ |.||. |+..|. ++||||++.+++|..
T Consensus 5 ~~l~n~~--~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~lWv~~~ 44 (239)
T 1b5f_A 5 VALTNDR--DTSYFGE---IGIGT-----PPQKFT---VIFDTGSSVLWVPSS 44 (239)
T ss_dssp EEEEEET--TTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred eeeeecC--CCEEEEE---EEECC-----CCeEEE---EEEeCCCcceEEEcC
Confidence 4554422 4567765 66773 333344 999999999999864
No 60
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=24.13 E-value=53 Score=32.50 Aligned_cols=42 Identities=5% Similarity=0.013 Sum_probs=28.6
Q ss_pred EeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHH
Q 011746 312 YTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSP 365 (478)
Q Consensus 312 ~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~ 365 (478)
..||..+. ....|.++ |.||. |+..|. ++||||+..+++|..
T Consensus 11 ~~pl~~~~-~~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~ 52 (403)
T 3aup_A 11 VLPVQNDG-STGLHWAN---LQKRT-----PLMQVP---VLVDLNGNHLWVNCE 52 (403)
T ss_dssp EEEEEECT-TTCCEEEE---EEETT-----TTEEEE---EEEETTCSSEEEECS
T ss_pred EEeeecCC-CCceEEEE---EECCC-----CCceeE---EEEECCCCceeECCC
Confidence 46776433 24567765 66774 334444 999999999999865
No 61
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=20.94 E-value=75 Score=30.18 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=26.8
Q ss_pred eeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHH
Q 011746 313 TPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSP 365 (478)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~ 365 (478)
.||... ....|.++ |.||. |+..|. ++||||++.+++|..
T Consensus 4 ~~l~n~--~~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 43 (324)
T 1am5_A 4 EQMKNE--ADTEYYGV---ISIGT-----PPESFK---VIFDTGSSNLWVSSS 43 (324)
T ss_dssp EEEEEE--TTTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEECBT
T ss_pred eeeecC--CCCEEEEE---EEECC-----CCeEEE---EEEeCCCcceEEecC
Confidence 455542 24567766 66774 333344 999999999999975
No 62
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=20.81 E-value=75 Score=30.32 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=23.8
Q ss_pred CccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHH
Q 011746 322 SEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSP 365 (478)
Q Consensus 322 ~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~ 365 (478)
...|.++ |.||. |+..|. ++||||++.+++|..
T Consensus 14 ~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~ 46 (329)
T 1oew_A 14 DDAYITP---VQIGT-----PAQTLN---LDFDTGSSDLWVFSS 46 (329)
T ss_dssp CCCEEEE---EEETT-----TTEEEE---EEEETTCCCEEECBT
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEECCCCCCeEEecC
Confidence 4567665 77873 233343 999999999999975
No 63
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=20.27 E-value=1.1e+02 Score=29.15 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=26.4
Q ss_pred eeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeecCHH
Q 011746 313 TPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSP 365 (478)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~lp~~ 365 (478)
+||... ...|.++ |.||. |+..|. ++||||++.+++|..
T Consensus 5 ~~l~n~---~~~Y~~~---i~iGT-----P~q~~~---v~~DTGSs~lWv~~~ 43 (340)
T 1wkr_A 5 VPATNQ---LVDYVVN---VGVGS-----PATTYS---LLVDTGSSNTWLGAD 43 (340)
T ss_dssp EEEEEC---SSCEEEE---EEETT-----TTEEEE---EEEETTCCCCEECSS
T ss_pred Eeeecc---CcEEEEE---EEECC-----CCcEEE---EEEeCCChhheecCC
Confidence 556542 3467765 67773 333343 999999999999863
Done!