Query 011747
Match_columns 478
No_of_seqs 142 out of 1306
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:47:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 2.2E-75 4.8E-80 623.3 26.1 449 2-462 119-570 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 1.5E-55 3.1E-60 451.0 21.5 363 34-460 115-495 (498)
3 TIGR00926 2A1704 Peptide:H+ sy 100.0 1.3E-46 2.8E-51 408.7 32.3 355 35-455 84-654 (654)
4 PF00854 PTR2: POT family; In 100.0 4.3E-47 9.4E-52 390.6 8.8 339 32-396 29-371 (372)
5 PRK15462 dipeptide/tripeptide 100.0 5.1E-44 1.1E-48 376.8 28.9 377 37-461 101-488 (493)
6 PRK10207 dipeptide/tripeptide 100.0 1.2E-39 2.6E-44 346.6 29.2 372 38-465 107-489 (489)
7 TIGR00924 yjdL_sub1_fam amino 100.0 5.3E-38 1.1E-42 333.2 29.3 361 36-458 102-474 (475)
8 PRK09584 tppB putative tripept 100.0 2.4E-37 5.1E-42 330.1 27.6 369 36-463 112-490 (500)
9 PRK10489 enterobactin exporter 99.3 3E-10 6.5E-15 118.3 23.8 305 35-469 109-416 (417)
10 PRK11646 multidrug resistance 99.1 3.1E-09 6.8E-14 110.5 18.9 261 35-410 98-358 (400)
11 PRK03545 putative arabinose tr 99.1 1.6E-08 3.4E-13 104.4 24.0 84 35-124 96-179 (390)
12 TIGR00893 2A0114 d-galactonate 99.1 2.4E-08 5.3E-13 101.2 22.9 86 35-126 81-166 (399)
13 PRK10054 putative transporter; 99.0 8E-09 1.7E-13 107.2 18.3 83 36-125 96-178 (395)
14 PRK15402 multidrug efflux syst 99.0 5.9E-08 1.3E-12 100.7 23.2 85 35-125 100-184 (406)
15 PRK09874 drug efflux system pr 99.0 3.1E-08 6.7E-13 102.3 20.7 84 35-125 106-189 (408)
16 TIGR00902 2A0127 phenyl propri 99.0 6.3E-08 1.4E-12 99.8 22.5 279 34-447 92-374 (382)
17 TIGR00900 2A0121 H+ Antiporter 99.0 3.5E-08 7.6E-13 99.5 20.2 268 35-409 91-361 (365)
18 PRK11551 putative 3-hydroxyphe 99.0 1.1E-07 2.4E-12 98.3 23.7 84 35-124 102-185 (406)
19 TIGR00879 SP MFS transporter, 99.0 1.5E-07 3.1E-12 98.3 23.6 85 35-125 126-213 (481)
20 PRK05122 major facilitator sup 99.0 2.8E-07 6.2E-12 95.1 25.4 78 36-119 112-189 (399)
21 cd06174 MFS The Major Facilita 99.0 6.2E-08 1.4E-12 96.7 19.8 264 34-449 85-349 (352)
22 TIGR00926 2A1704 Peptide:H+ sy 98.9 1.1E-08 2.4E-13 112.4 14.3 252 35-338 81-342 (654)
23 PRK06814 acylglycerophosphoeth 98.9 7.2E-08 1.6E-12 113.3 21.7 281 34-409 106-394 (1140)
24 PRK11128 putative 3-phenylprop 98.9 1.7E-07 3.8E-12 96.5 21.7 262 34-410 92-354 (382)
25 PF07690 MFS_1: Major Facilita 98.9 3.2E-08 6.9E-13 99.3 15.4 85 35-125 84-168 (352)
26 PF05977 MFS_3: Transmembrane 98.9 2.9E-07 6.2E-12 99.0 23.5 268 34-410 101-368 (524)
27 PRK10504 putative transporter; 98.9 4.1E-07 8.9E-12 96.3 24.4 86 35-126 97-182 (471)
28 TIGR00892 2A0113 monocarboxyla 98.9 6.1E-08 1.3E-12 102.6 17.7 62 348-409 332-393 (455)
29 TIGR00901 2A0125 AmpG-related 98.8 3.2E-07 6.9E-12 93.3 20.4 262 35-395 82-355 (356)
30 TIGR00894 2A0114euk Na(+)-depe 98.8 8.2E-07 1.8E-11 93.9 23.5 84 36-125 131-215 (465)
31 PRK10077 xylE D-xylose transpo 98.8 6.6E-07 1.4E-11 94.7 22.4 86 34-125 118-211 (479)
32 TIGR00711 efflux_EmrB drug res 98.8 5.4E-07 1.2E-11 95.3 21.2 85 35-125 89-173 (485)
33 TIGR00710 efflux_Bcr_CflA drug 98.8 8.5E-07 1.8E-11 90.5 21.4 87 35-127 92-178 (385)
34 PRK12382 putative transporter; 98.8 1.5E-06 3.2E-11 89.6 23.1 77 35-117 111-187 (392)
35 PRK11010 ampG muropeptide tran 98.7 4.6E-06 9.9E-11 89.3 26.5 85 34-124 105-190 (491)
36 TIGR00895 2A0115 benzoate tran 98.7 2E-06 4.2E-11 87.8 21.3 84 35-124 104-187 (398)
37 TIGR00898 2A0119 cation transp 98.7 3.2E-06 7E-11 90.2 23.4 82 35-125 179-260 (505)
38 PRK14995 methyl viologen resis 98.7 2E-06 4.3E-11 92.1 21.3 87 34-125 92-178 (495)
39 PRK11663 regulatory protein Uh 98.7 2.2E-06 4.8E-11 90.0 21.3 82 35-122 110-191 (434)
40 TIGR00899 2A0120 sugar efflux 98.7 4.2E-06 9.1E-11 85.1 22.5 85 349-450 288-372 (375)
41 PRK11102 bicyclomycin/multidru 98.6 4.5E-06 9.8E-11 85.2 22.1 85 35-125 78-162 (377)
42 PRK15403 multidrug efflux syst 98.6 5E-06 1.1E-10 86.8 22.7 84 35-124 103-186 (413)
43 PRK12307 putative sialic acid 98.6 3.1E-06 6.6E-11 88.2 20.4 78 35-118 105-182 (426)
44 PRK10213 nepI ribonucleoside t 98.6 5.1E-06 1.1E-10 86.2 21.9 83 34-122 106-188 (394)
45 TIGR00792 gph sugar (Glycoside 98.6 4.4E-06 9.5E-11 87.2 21.3 109 277-410 264-379 (437)
46 PRK09705 cynX putative cyanate 98.6 7.4E-06 1.6E-10 84.9 22.8 81 35-122 96-177 (393)
47 TIGR00890 2A0111 Oxalate/Forma 98.6 2.2E-06 4.8E-11 86.6 18.3 84 35-125 90-173 (377)
48 PRK10473 multidrug efflux syst 98.6 6.6E-06 1.4E-10 84.8 21.7 85 35-125 90-174 (392)
49 PRK03633 putative MFS family t 98.6 1.1E-05 2.4E-10 83.0 23.3 71 35-111 93-163 (381)
50 PRK09848 glucuronide transport 98.6 3.8E-06 8.3E-11 88.5 20.0 85 311-408 294-385 (448)
51 PRK11273 glpT sn-glycerol-3-ph 98.6 8.4E-06 1.8E-10 86.1 22.5 84 35-124 119-203 (452)
52 PRK08633 2-acyl-glycerophospho 98.6 7.5E-06 1.6E-10 96.2 23.6 64 35-104 102-165 (1146)
53 PRK03893 putative sialic acid 98.6 5.1E-06 1.1E-10 88.4 20.2 79 35-119 107-185 (496)
54 PRK09528 lacY galactoside perm 98.5 4.2E-06 9.1E-11 87.3 18.8 134 274-449 266-400 (420)
55 PRK11902 ampG muropeptide tran 98.5 3.7E-05 8E-10 79.8 25.6 84 35-124 93-177 (402)
56 PRK15011 sugar efflux transpor 98.5 1.3E-05 2.9E-10 82.8 22.1 68 52-125 121-190 (393)
57 PRK11043 putative transporter; 98.5 1.5E-05 3.3E-10 82.3 22.4 85 35-125 93-177 (401)
58 TIGR01301 GPH_sucrose GPH fami 98.5 1.8E-05 4E-10 84.0 22.6 299 37-409 115-442 (477)
59 PRK11652 emrD multidrug resist 98.5 2.4E-05 5.2E-10 80.7 23.1 83 35-123 95-177 (394)
60 TIGR00883 2A0106 metabolite-pr 98.5 9.9E-06 2.1E-10 82.3 19.3 81 38-124 98-186 (394)
61 PRK10091 MFS transport protein 98.5 2.6E-05 5.6E-10 80.3 21.7 84 35-124 90-173 (382)
62 TIGR00881 2A0104 phosphoglycer 98.5 6.7E-06 1.4E-10 83.1 17.0 86 35-126 82-168 (379)
63 TIGR00788 fbt folate/biopterin 98.5 4.1E-06 8.9E-11 89.1 15.9 84 38-125 122-205 (468)
64 PRK11195 lysophospholipid tran 98.4 3.7E-05 8E-10 79.7 22.6 77 40-123 92-168 (393)
65 PRK09556 uhpT sugar phosphate 98.4 1.2E-05 2.6E-10 85.3 18.7 83 34-122 120-205 (467)
66 PF13347 MFS_2: MFS/sugar tran 98.4 3.9E-05 8.5E-10 80.3 22.4 308 37-457 104-426 (428)
67 TIGR00889 2A0110 nucleoside tr 98.4 7.8E-05 1.7E-09 78.1 24.3 120 313-453 283-403 (418)
68 TIGR01299 synapt_SV2 synaptic 98.4 4.9E-05 1.1E-09 84.9 23.7 81 314-409 628-708 (742)
69 TIGR00891 2A0112 putative sial 98.4 1.2E-05 2.7E-10 82.3 17.4 83 35-123 99-183 (405)
70 TIGR00903 2A0129 major facilit 98.4 6.5E-05 1.4E-09 77.4 22.5 82 35-123 78-159 (368)
71 PRK03699 putative transporter; 98.4 0.00012 2.5E-09 75.8 23.8 85 35-125 94-179 (394)
72 PLN00028 nitrate transmembrane 98.3 4E-05 8.7E-10 81.7 20.2 84 35-125 123-215 (476)
73 KOG1330 Sugar transporter/spin 98.3 3.3E-06 7.2E-11 87.2 11.0 88 34-127 119-207 (493)
74 TIGR00882 2A0105 oligosacchari 98.3 0.0001 2.3E-09 76.1 22.5 81 314-409 287-368 (396)
75 PRK10642 proline/glycine betai 98.3 0.0002 4.4E-09 76.4 24.9 74 38-117 120-201 (490)
76 PRK10406 alpha-ketoglutarate t 98.3 0.00013 2.9E-09 76.5 23.0 79 37-121 125-211 (432)
77 TIGR00887 2A0109 phosphate:H+ 98.3 8.3E-05 1.8E-09 79.7 21.3 82 36-123 115-219 (502)
78 TIGR00712 glpT glycerol-3-phos 98.3 5E-05 1.1E-09 79.8 18.8 84 36-125 118-202 (438)
79 COG2814 AraJ Arabinose efflux 98.3 0.00026 5.7E-09 72.9 22.9 86 34-125 99-184 (394)
80 KOG2532 Permease of the major 98.2 7.8E-05 1.7E-09 79.1 19.2 311 38-452 130-447 (466)
81 TIGR00897 2A0118 polyol permea 98.2 0.00053 1.1E-08 71.2 25.1 73 35-113 104-177 (402)
82 TIGR00896 CynX cyanate transpo 98.2 0.00014 3.1E-09 73.8 19.9 81 35-122 86-168 (355)
83 PRK09669 putative symporter Ya 98.2 0.00023 5.1E-09 74.9 21.8 63 348-410 318-387 (444)
84 PRK10429 melibiose:sodium symp 98.2 0.00016 3.4E-09 77.0 20.3 62 348-409 323-391 (473)
85 PRK09952 shikimate transporter 98.1 0.001 2.3E-08 69.9 25.7 77 38-120 127-211 (438)
86 TIGR02718 sider_RhtX_FptX side 98.1 0.00044 9.4E-09 71.3 22.2 50 77-126 132-181 (390)
87 PRK15075 citrate-proton sympor 98.1 0.00039 8.5E-09 73.0 21.1 73 38-116 119-199 (434)
88 TIGR01272 gluP glucose/galacto 98.1 0.00067 1.4E-08 68.2 21.4 90 30-125 4-109 (310)
89 PF03209 PUCC: PUCC protein; 98.0 0.0022 4.8E-08 66.0 24.5 88 313-412 277-364 (403)
90 TIGR02332 HpaX 4-hydroxyphenyl 98.0 0.00062 1.3E-08 71.1 20.9 85 35-125 95-185 (412)
91 TIGR02332 HpaX 4-hydroxyphenyl 97.9 0.0011 2.3E-08 69.3 19.2 81 314-409 76-156 (412)
92 TIGR00893 2A0114 d-galactonate 97.8 0.00067 1.4E-08 68.5 15.8 137 273-451 32-168 (399)
93 PF07690 MFS_1: Major Facilita 97.7 0.0016 3.4E-08 65.2 17.5 132 274-447 36-167 (352)
94 PRK11551 putative 3-hydroxyphe 97.7 0.0033 7.1E-08 64.9 19.1 109 274-408 54-162 (406)
95 KOG2533 Permease of the major 97.6 0.014 3E-07 62.5 22.9 85 34-124 132-222 (495)
96 TIGR00710 efflux_Bcr_CflA drug 97.6 0.0031 6.8E-08 64.1 17.5 110 274-409 44-153 (385)
97 PRK11663 regulatory protein Uh 97.6 0.009 2E-07 62.7 21.0 109 275-409 63-171 (434)
98 PRK03545 putative arabinose tr 97.6 0.0045 9.8E-08 63.7 18.4 83 312-409 75-157 (390)
99 COG2271 UhpC Sugar phosphate p 97.6 0.0034 7.3E-08 64.7 16.8 89 35-129 116-207 (448)
100 TIGR00885 fucP L-fucose:H+ sym 97.6 0.0057 1.2E-07 63.9 19.0 85 34-124 92-202 (410)
101 TIGR00711 efflux_EmrB drug res 97.5 0.0035 7.5E-08 66.2 17.1 111 273-409 40-150 (485)
102 TIGR00900 2A0121 H+ Antiporter 97.5 0.004 8.7E-08 62.5 16.8 115 274-409 38-152 (365)
103 PRK11462 putative transporter; 97.5 0.011 2.3E-07 62.9 20.6 82 39-125 112-200 (460)
104 PRK14995 methyl viologen resis 97.5 0.012 2.5E-07 63.1 20.9 112 273-410 44-156 (495)
105 PRK09556 uhpT sugar phosphate 97.5 0.0016 3.6E-08 69.0 14.2 87 312-408 95-181 (467)
106 KOG1330 Sugar transporter/spin 97.5 0.0001 2.2E-09 76.4 4.6 137 275-453 73-210 (493)
107 PF11700 ATG22: Vacuole efflux 97.5 0.05 1.1E-06 58.1 25.2 63 348-412 381-443 (477)
108 TIGR00891 2A0112 putative sial 97.5 0.007 1.5E-07 61.8 17.9 111 273-409 50-160 (405)
109 TIGR00881 2A0104 phosphoglycer 97.4 0.0016 3.6E-08 65.6 12.5 109 274-408 34-143 (379)
110 PRK10473 multidrug efflux syst 97.4 0.0071 1.5E-07 62.2 17.4 108 276-409 44-151 (392)
111 TIGR00895 2A0115 benzoate tran 97.4 0.0023 5.1E-08 65.0 13.5 81 314-409 85-165 (398)
112 PRK10213 nepI ribonucleoside t 97.4 0.022 4.7E-07 59.1 20.7 108 276-409 61-168 (394)
113 PRK10133 L-fucose transporter; 97.4 0.017 3.8E-07 60.8 20.2 60 34-99 115-174 (438)
114 PF03092 BT1: BT1 family; Int 97.4 0.0064 1.4E-07 64.1 16.6 86 37-126 87-172 (433)
115 PRK15403 multidrug efflux syst 97.3 0.014 3.1E-07 60.9 18.7 104 313-447 83-186 (413)
116 PRK09874 drug efflux system pr 97.3 0.018 3.8E-07 59.3 19.0 108 275-409 59-166 (408)
117 TIGR00894 2A0114euk Na(+)-depe 97.3 0.0023 4.9E-08 67.7 12.5 83 314-409 109-191 (465)
118 TIGR00880 2_A_01_02 Multidrug 97.3 0.018 3.8E-07 48.9 15.9 62 348-409 50-111 (141)
119 COG2814 AraJ Arabinose efflux 97.3 0.013 2.8E-07 60.5 17.0 138 273-453 51-189 (394)
120 TIGR00879 SP MFS transporter, 97.3 0.0048 1E-07 64.2 14.3 109 274-405 75-183 (481)
121 PRK11646 multidrug resistance 97.3 0.027 5.8E-07 58.5 19.5 81 314-409 79-159 (400)
122 PRK12307 putative sialic acid 97.2 0.018 3.9E-07 59.8 18.2 110 274-409 57-166 (426)
123 PRK10091 MFS transport protein 97.2 0.022 4.8E-07 58.5 18.7 111 273-409 41-151 (382)
124 PRK10054 putative transporter; 97.2 0.017 3.6E-07 59.9 17.5 111 273-409 46-156 (395)
125 TIGR00806 rfc RFC reduced fola 97.2 0.072 1.6E-06 56.5 21.3 80 313-408 94-173 (511)
126 PRK11102 bicyclomycin/multidru 97.2 0.015 3.2E-07 59.2 16.2 108 276-409 32-139 (377)
127 PRK10504 putative transporter; 97.1 0.038 8.1E-07 58.4 19.6 62 348-409 97-158 (471)
128 TIGR00886 2A0108 nitrite extru 97.1 0.0045 9.8E-08 62.6 12.1 77 35-118 90-177 (366)
129 KOG3764 Vesicular amine transp 97.1 0.0021 4.6E-08 65.6 9.4 146 273-460 109-255 (464)
130 PRK11273 glpT sn-glycerol-3-ph 97.1 0.046 1E-06 57.7 19.9 81 313-404 95-175 (452)
131 PRK03699 putative transporter; 97.1 0.045 9.8E-07 56.5 19.3 80 314-408 75-154 (394)
132 TIGR00805 oat sodium-independe 97.1 0.005 1.1E-07 68.1 12.8 126 273-409 71-232 (633)
133 KOG2533 Permease of the major 97.1 0.015 3.3E-07 62.1 16.0 95 348-452 133-227 (495)
134 PTZ00207 hypothetical protein; 97.1 0.039 8.4E-07 60.4 19.2 116 312-455 92-208 (591)
135 KOG2615 Permease of the major 97.1 0.0069 1.5E-07 61.7 12.3 58 352-409 355-412 (451)
136 PRK03633 putative MFS family t 97.0 0.076 1.7E-06 54.5 20.1 110 274-409 45-154 (381)
137 TIGR00805 oat sodium-independe 97.0 0.009 1.9E-07 66.1 13.5 87 35-127 171-279 (633)
138 PRK09705 cynX putative cyanate 97.0 0.037 7.9E-07 57.3 17.2 110 273-409 47-156 (393)
139 TIGR00712 glpT glycerol-3-phos 97.0 0.04 8.6E-07 57.9 17.6 83 314-407 94-176 (438)
140 TIGR00886 2A0108 nitrite extru 96.9 0.095 2.1E-06 52.9 19.6 109 273-407 40-148 (366)
141 TIGR01299 synapt_SV2 synaptic 96.9 0.068 1.5E-06 60.1 19.7 109 274-408 206-314 (742)
142 PRK15402 multidrug efflux syst 96.9 0.081 1.8E-06 54.7 19.1 62 348-409 100-161 (406)
143 TIGR00890 2A0111 Oxalate/Forma 96.9 0.028 6E-07 56.5 15.2 134 274-450 42-175 (377)
144 KOG3762 Predicted transporter 96.9 0.017 3.6E-07 61.4 13.5 120 311-461 436-556 (618)
145 TIGR00885 fucP L-fucose:H+ sym 96.9 0.1 2.2E-06 54.6 19.6 113 273-408 41-153 (410)
146 PRK03893 putative sialic acid 96.9 0.091 2E-06 55.8 19.5 81 314-409 88-168 (496)
147 PRK11010 ampG muropeptide tran 96.8 0.16 3.5E-06 54.3 21.1 107 289-409 60-167 (491)
148 PF01306 LacY_symp: LacY proto 96.8 0.18 3.8E-06 52.7 20.4 89 347-451 310-399 (412)
149 PF03825 Nuc_H_symport: Nucleo 96.8 0.1 2.2E-06 54.5 18.7 92 352-453 304-396 (400)
150 TIGR00892 2A0113 monocarboxyla 96.8 0.042 9.1E-07 58.2 16.0 134 275-451 59-193 (455)
151 cd06174 MFS The Major Facilita 96.8 0.059 1.3E-06 53.4 16.3 111 274-410 38-148 (352)
152 KOG1237 H+/oligopeptide sympor 96.7 0.0024 5.1E-08 69.5 6.1 213 39-331 62-276 (571)
153 PRK10077 xylE D-xylose transpo 96.7 0.043 9.3E-07 57.9 15.6 119 276-408 61-179 (479)
154 TIGR00898 2A0119 cation transp 96.7 0.016 3.5E-07 61.7 12.3 133 273-450 130-262 (505)
155 TIGR00903 2A0129 major facilit 96.7 0.086 1.9E-06 54.3 17.1 86 348-450 78-163 (368)
156 PRK10489 enterobactin exporter 96.7 0.069 1.5E-06 55.4 16.6 116 273-409 55-170 (417)
157 PRK12382 putative transporter; 96.6 0.078 1.7E-06 54.4 16.6 118 274-409 55-172 (392)
158 TIGR00887 2A0109 phosphate:H+ 96.6 0.13 2.8E-06 55.1 18.6 86 314-408 89-174 (502)
159 PRK10133 L-fucose transporter; 96.6 0.26 5.7E-06 51.9 20.7 111 275-408 66-176 (438)
160 KOG3098 Uncharacterized conser 96.6 1.2 2.7E-05 47.1 25.1 173 274-472 279-455 (461)
161 TIGR00924 yjdL_sub1_fam amino 96.6 0.051 1.1E-06 58.0 15.0 113 313-456 81-196 (475)
162 PRK05122 major facilitator sup 96.6 0.0015 3.2E-08 67.4 3.0 91 36-132 302-392 (399)
163 TIGR00901 2A0125 AmpG-related 96.6 0.099 2.2E-06 52.8 16.4 83 315-409 61-143 (356)
164 TIGR00880 2_A_01_02 Multidrug 96.5 0.0023 5.1E-08 54.4 3.8 86 35-126 50-135 (141)
165 KOG2504 Monocarboxylate transp 96.5 0.12 2.5E-06 55.8 17.0 112 311-452 365-476 (509)
166 PRK11652 emrD multidrug resist 96.5 0.24 5.2E-06 50.9 18.8 108 276-409 49-156 (394)
167 PF06609 TRI12: Fungal trichot 96.4 0.46 9.9E-06 52.0 20.8 87 34-127 129-215 (599)
168 PRK11902 ampG muropeptide tran 96.4 0.21 4.6E-06 51.6 17.9 84 314-409 71-154 (402)
169 TIGR00899 2A0120 sugar efflux 96.3 0.15 3.2E-06 51.6 15.9 90 348-453 86-177 (375)
170 COG2807 CynX Cyanate permease 96.3 0.66 1.4E-05 47.4 19.8 85 35-126 98-183 (395)
171 PRK08633 2-acyl-glycerophospho 96.3 0.13 2.8E-06 60.7 17.5 62 348-409 102-163 (1146)
172 TIGR00897 2A0118 polyol permea 96.2 0.31 6.7E-06 50.4 18.1 112 274-407 52-164 (402)
173 PRK11043 putative transporter; 96.2 0.46 9.9E-06 48.9 19.2 108 276-409 47-154 (401)
174 PRK11195 lysophospholipid tran 96.2 0.21 4.6E-06 51.6 16.6 108 273-409 41-148 (393)
175 TIGR01301 GPH_sucrose GPH fami 96.2 0.14 3.1E-06 54.6 15.4 129 274-408 43-175 (477)
176 KOG0569 Permease of the major 96.1 1.4 3E-05 47.1 22.0 84 366-466 385-468 (485)
177 PF03209 PUCC: PUCC protein; 96.0 0.51 1.1E-05 48.9 17.9 92 313-406 52-146 (403)
178 COG2223 NarK Nitrate/nitrite t 96.0 0.49 1.1E-05 49.0 17.6 85 38-130 107-194 (417)
179 PRK15034 nitrate/nitrite trans 95.9 1.2 2.5E-05 47.5 20.8 58 34-98 126-183 (462)
180 PRK10207 dipeptide/tripeptide 95.9 0.25 5.3E-06 53.0 15.6 86 311-410 81-168 (489)
181 COG2271 UhpC Sugar phosphate p 95.8 0.16 3.5E-06 52.7 13.3 84 308-406 91-174 (448)
182 PRK06814 acylglycerophosphoeth 95.8 0.42 9.1E-06 56.6 18.9 64 347-410 106-169 (1140)
183 PRK09584 tppB putative tripept 95.8 0.46 9.9E-06 51.1 17.3 116 313-458 90-207 (500)
184 PRK10406 alpha-ketoglutarate t 95.8 0.52 1.1E-05 49.3 17.4 107 288-408 77-183 (432)
185 TIGR00883 2A0106 metabolite-pr 95.6 0.22 4.7E-06 50.3 13.6 90 313-409 67-156 (394)
186 PRK10642 proline/glycine betai 95.6 0.23 4.9E-06 53.1 14.1 107 288-408 71-177 (490)
187 COG2211 MelB Na+/melibiose sym 95.5 1.7 3.7E-05 46.1 19.9 82 313-407 304-392 (467)
188 COG0738 FucP Fucose permease [ 95.5 2 4.4E-05 44.5 19.5 67 30-102 98-164 (422)
189 PLN00028 nitrate transmembrane 95.5 1.4 3E-05 46.9 19.5 79 313-407 103-181 (476)
190 KOG0255 Synaptic vesicle trans 95.2 5.3 0.00012 42.8 24.3 82 34-124 169-250 (521)
191 TIGR00792 gph sugar (Glycoside 94.7 0.29 6.2E-06 50.9 11.6 84 314-406 73-157 (437)
192 KOG2532 Permease of the major 94.6 0.65 1.4E-05 49.5 14.0 114 312-453 104-217 (466)
193 PRK15034 nitrate/nitrite trans 94.6 5.4 0.00012 42.5 20.8 114 270-402 67-180 (462)
194 PF03137 OATP: Organic Anion T 94.6 0.0071 1.5E-07 65.5 -0.9 144 309-458 66-256 (539)
195 TIGR00896 CynX cyanate transpo 94.6 1.6 3.5E-05 44.0 16.4 109 273-409 38-146 (355)
196 KOG2816 Predicted transporter 94.5 0.87 1.9E-05 48.5 14.4 82 313-410 310-391 (463)
197 COG2270 Permeases of the major 94.5 7.3 0.00016 40.7 21.5 86 312-412 319-404 (438)
198 TIGR00889 2A0110 nucleoside tr 94.2 0.026 5.5E-07 59.1 2.1 86 36-127 308-400 (418)
199 PRK15011 sugar efflux transpor 94.1 6.1 0.00013 40.6 19.6 86 349-450 105-192 (393)
200 PF00854 PTR2: POT family; In 94.0 0.49 1.1E-05 48.6 11.3 127 313-461 3-132 (372)
201 KOG0254 Predicted transporter 93.9 7.7 0.00017 41.7 20.8 84 35-124 141-225 (513)
202 KOG2325 Predicted transporter/ 93.9 1 2.2E-05 48.0 13.3 114 273-408 74-188 (488)
203 PRK09952 shikimate transporter 93.9 1.2 2.7E-05 46.6 14.2 109 286-408 76-184 (438)
204 PRK15075 citrate-proton sympor 93.8 3.2 6.9E-05 43.4 17.1 86 313-408 88-176 (434)
205 TIGR00882 2A0105 oligosacchari 93.8 1.8 3.8E-05 44.5 14.9 56 352-409 102-157 (396)
206 TIGR01272 gluP glucose/galacto 93.7 0.79 1.7E-05 45.9 11.8 63 347-409 8-70 (310)
207 KOG3764 Vesicular amine transp 93.5 0.09 1.9E-06 54.1 4.5 88 35-127 158-245 (464)
208 KOG3626 Organic anion transpor 93.5 0.54 1.2E-05 52.3 10.9 145 309-459 160-350 (735)
209 PRK15462 dipeptide/tripeptide 93.5 5 0.00011 43.1 18.0 114 313-456 78-193 (493)
210 PF06813 Nodulin-like: Nodulin 93.5 4 8.7E-05 39.7 15.9 122 311-458 66-187 (250)
211 PF05977 MFS_3: Transmembrane 92.9 2.7 5.9E-05 45.5 15.0 114 273-408 48-162 (524)
212 KOG4686 Predicted sugar transp 92.0 6.9 0.00015 39.0 14.8 88 355-454 358-445 (459)
213 TIGR00902 2A0127 phenyl propri 91.7 5.6 0.00012 40.7 15.1 60 348-409 93-152 (382)
214 COG2807 CynX Cyanate permease 91.3 7.6 0.00017 39.9 14.9 117 308-456 74-190 (395)
215 KOG2615 Permease of the major 91.2 1.3 2.8E-05 45.7 9.4 102 286-410 80-181 (451)
216 TIGR00806 rfc RFC reduced fola 90.9 16 0.00034 39.2 17.4 82 35-124 114-198 (511)
217 TIGR02718 sider_RhtX_FptX side 90.7 15 0.00032 37.6 17.2 86 349-450 97-182 (390)
218 COG0738 FucP Fucose permease [ 90.5 19 0.00041 37.5 17.1 88 309-408 76-163 (422)
219 PRK11128 putative 3-phenylprop 90.2 9.6 0.00021 38.9 15.2 60 348-409 93-152 (382)
220 PF13347 MFS_2: MFS/sugar tran 90.1 1.7 3.8E-05 45.2 9.8 116 282-406 41-161 (428)
221 PRK09528 lacY galactoside perm 90.0 8.1 0.00017 40.0 14.6 28 382-409 138-165 (420)
222 KOG0254 Predicted transporter 89.3 7.6 0.00016 41.7 14.2 107 273-405 92-198 (513)
223 PF06609 TRI12: Fungal trichot 89.2 24 0.00053 38.8 17.9 121 259-408 69-189 (599)
224 PF00083 Sugar_tr: Sugar (and 88.6 0.0005 1.1E-08 72.2 -18.4 82 35-122 101-185 (451)
225 KOG0569 Permease of the major 88.0 13 0.00029 39.7 14.5 58 348-405 115-172 (485)
226 PTZ00207 hypothetical protein; 87.6 49 0.0011 36.5 20.2 83 34-125 118-202 (591)
227 COG2223 NarK Nitrate/nitrite t 86.9 16 0.00034 38.1 13.8 121 267-409 43-163 (417)
228 PRK09669 putative symporter Ya 86.6 3.8 8.3E-05 42.9 9.6 83 314-405 83-166 (444)
229 PRK11462 putative transporter; 86.4 36 0.00078 36.0 17.0 83 314-405 83-166 (460)
230 KOG2816 Predicted transporter 86.4 25 0.00054 37.5 15.6 47 364-410 127-173 (463)
231 PRK10429 melibiose:sodium symp 86.2 12 0.00026 39.6 13.3 82 314-404 80-162 (473)
232 TIGR00939 2a57 Equilibrative N 85.7 19 0.00041 38.1 14.2 124 308-451 72-195 (437)
233 PF03092 BT1: BT1 family; Int 84.4 11 0.00024 39.7 11.8 84 314-409 62-148 (433)
234 KOG4686 Predicted sugar transp 83.2 1.9 4.2E-05 42.8 4.9 81 39-125 355-438 (459)
235 PF11700 ATG22: Vacuole efflux 82.6 1.1 2.4E-05 47.9 3.4 86 35-126 379-465 (477)
236 KOG3626 Organic anion transpor 82.3 5.4 0.00012 44.6 8.6 91 36-132 237-346 (735)
237 COG2211 MelB Na+/melibiose sym 81.0 49 0.0011 35.3 14.8 105 346-462 109-214 (467)
238 KOG2504 Monocarboxylate transp 80.7 1.3 2.8E-05 47.8 3.0 88 36-129 388-476 (509)
239 PF02487 CLN3: CLN3 protein; 80.5 37 0.0008 35.5 13.5 81 309-409 87-167 (402)
240 PF01891 CbiM: Cobalt uptake s 80.1 22 0.00048 33.4 10.9 96 278-380 107-204 (205)
241 KOG2563 Permease of the major 78.4 39 0.00084 35.8 12.7 98 354-463 364-461 (480)
242 KOG4255 Uncharacterized conser 77.0 90 0.002 31.8 16.6 102 347-459 111-218 (439)
243 PF06679 DUF1180: Protein of u 76.9 3.5 7.6E-05 37.3 4.2 29 430-458 94-122 (163)
244 PRK09848 glucuronide transport 74.4 45 0.00099 34.8 12.6 50 347-396 107-157 (448)
245 KOG2325 Predicted transporter/ 74.0 28 0.00061 37.2 10.7 55 355-409 394-448 (488)
246 PF05978 UNC-93: Ion channel r 73.8 67 0.0015 28.8 17.2 61 348-408 88-148 (156)
247 TIGR00788 fbt folate/biopterin 73.3 1.1E+02 0.0024 32.4 15.3 58 351-409 122-182 (468)
248 PF07857 DUF1632: CEO family ( 72.9 14 0.00029 36.1 7.4 30 378-407 72-101 (254)
249 PF01770 Folate_carrier: Reduc 72.4 1.2E+02 0.0026 31.8 14.7 62 347-409 92-153 (412)
250 PF03137 OATP: Organic Anion T 70.1 1.2 2.6E-05 48.4 -0.6 91 36-132 141-253 (539)
251 KOG0255 Synaptic vesicle trans 66.5 69 0.0015 34.2 12.1 86 347-451 169-254 (521)
252 PF11368 DUF3169: Protein of u 66.1 6.2 0.00013 38.3 3.5 24 446-469 66-89 (248)
253 PF03825 Nuc_H_symport: Nucleo 64.5 5.6 0.00012 41.5 3.1 82 41-128 306-394 (400)
254 PRK07331 cobalt transport prot 63.8 82 0.0018 31.9 11.1 99 279-382 109-220 (322)
255 TIGR00769 AAA ADP/ATP carrier 59.9 2.5E+02 0.0053 30.1 17.8 296 59-458 152-471 (472)
256 TIGR00123 cbiM cobalamin biosy 59.1 1.5E+02 0.0032 28.2 11.3 99 278-382 110-212 (214)
257 KOG3574 Acetyl-CoA transporter 56.2 25 0.00055 36.5 5.8 93 311-411 338-432 (510)
258 PRK08319 cobalt transport prot 54.4 1.9E+02 0.0041 27.6 11.4 32 353-384 183-214 (224)
259 PF06963 FPN1: Ferroportin1 (F 54.2 2.9E+02 0.0063 29.2 17.3 126 270-410 290-417 (432)
260 PRK11909 cobalt transport prot 52.4 2.1E+02 0.0046 27.4 11.3 35 348-382 182-217 (230)
261 KOG0252 Inorganic phosphate tr 50.1 55 0.0012 35.0 7.3 148 270-446 81-236 (538)
262 KOG3574 Acetyl-CoA transporter 49.5 1.1E+02 0.0023 32.1 9.1 167 282-472 79-251 (510)
263 COG3104 PTR2 Dipeptide/tripept 47.4 97 0.0021 33.2 8.8 124 311-463 92-217 (498)
264 KOG0252 Inorganic phosphate tr 45.4 16 0.00036 38.7 2.7 79 45-123 43-129 (538)
265 PF01733 Nucleoside_tran: Nucl 45.4 7 0.00015 39.1 0.0 82 357-454 5-86 (309)
266 PRK10478 putative PTS system f 43.1 71 0.0015 32.8 6.8 22 82-103 53-78 (359)
267 COG3202 ATP/ADP translocase [E 40.9 5E+02 0.011 28.0 19.8 332 36-476 160-509 (509)
268 PF01306 LacY_symp: LacY proto 40.7 3.7E+02 0.0081 28.2 11.9 22 273-294 46-67 (412)
269 PRK06265 cobalt transport prot 40.3 2.8E+02 0.0061 25.8 10.0 94 279-383 103-198 (199)
270 PF12606 RELT: Tumour necrosis 39.7 58 0.0013 23.4 3.9 29 440-468 12-40 (50)
271 KOG0637 Sucrose transporter an 39.1 1.1E+02 0.0025 32.5 7.7 162 227-406 32-200 (498)
272 PF00083 Sugar_tr: Sugar (and 37.5 8.7 0.00019 40.0 -0.8 67 52-124 365-431 (451)
273 PF06123 CreD: Inner membrane 36.6 5.4E+02 0.012 27.2 12.6 18 317-334 301-318 (430)
274 PF01102 Glycophorin_A: Glycop 36.4 37 0.00079 29.2 3.0 25 433-457 70-94 (122)
275 KOG1479 Nucleoside transporter 36.0 5.3E+02 0.012 27.0 15.3 73 311-388 84-156 (406)
276 PF14007 YtpI: YtpI-like prote 35.3 24 0.00052 28.6 1.6 69 63-137 18-86 (89)
277 PRK14780 lipoprotein signal pe 34.2 1.7E+02 0.0037 28.6 7.4 19 394-412 138-156 (263)
278 PRK13108 prolipoprotein diacyl 33.9 2.2E+02 0.0048 30.4 8.9 20 383-402 222-241 (460)
279 PRK11715 inner membrane protei 33.6 6E+02 0.013 26.9 12.4 79 316-406 306-395 (436)
280 PRK15049 L-asparagine permease 32.8 6.1E+02 0.013 27.1 12.5 12 77-88 107-118 (499)
281 COG1585 Membrane protein impli 32.7 3.2E+02 0.0069 24.0 8.5 20 347-367 4-23 (140)
282 PF06027 DUF914: Eukaryotic pr 31.6 1.5E+02 0.0032 30.2 7.0 24 432-455 287-310 (334)
283 PF06645 SPC12: Microsomal sig 30.0 34 0.00074 26.8 1.7 53 77-132 7-59 (76)
284 PF03219 TLC: TLC ATP/ADP tran 29.1 7.5E+02 0.016 26.6 18.3 54 357-410 148-205 (491)
285 KOG3012 Uncharacterized conser 28.3 2.4E+02 0.0051 27.0 7.1 28 354-381 82-109 (259)
286 COG1263 PtsG Phosphotransferas 27.9 7.1E+02 0.015 25.9 16.1 78 392-469 306-386 (393)
287 PF02487 CLN3: CLN3 protein; 27.6 6.6E+02 0.014 26.3 11.1 62 348-409 334-395 (402)
288 COG0477 ProP Permeases of the 25.4 3.3E+02 0.0071 25.0 8.0 62 348-409 93-156 (338)
289 KOG3762 Predicted transporter 25.0 2.4E+02 0.0053 30.9 7.4 146 275-461 411-559 (618)
290 KOG4536 Predicted membrane pro 24.8 6.9E+02 0.015 24.8 12.9 104 349-462 116-221 (347)
291 PF08374 Protocadherin: Protoc 22.7 31 0.00067 32.5 0.2 52 425-476 32-86 (221)
292 PRK10692 hypothetical protein; 22.6 4.1E+02 0.009 21.4 7.1 32 430-461 38-69 (92)
293 PF03219 TLC: TLC ATP/ADP tran 22.6 9.8E+02 0.021 25.7 16.6 29 75-103 177-205 (491)
294 PF15069 FAM163: FAM163 family 21.7 1.1E+02 0.0023 27.1 3.3 33 439-471 18-55 (143)
295 PF11669 WBP-1: WW domain-bind 21.6 98 0.0021 25.7 3.0 7 431-437 21-27 (102)
296 PRK11677 hypothetical protein; 20.8 40 0.00087 29.5 0.6 25 435-459 3-27 (134)
297 PRK10633 hypothetical protein; 20.1 1.8E+02 0.0039 23.1 4.0 36 431-468 44-80 (80)
298 PF10731 Anophelin: Thrombin i 20.1 2E+02 0.0042 21.4 3.8 39 436-475 7-45 (65)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-75 Score=623.28 Aligned_cols=449 Identities=45% Similarity=0.760 Sum_probs=404.5
Q ss_pred EEEeeehhcCCCCCCCCCCCCCCCCCCcCCCchhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHH
Q 011747 2 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 81 (478)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~ 81 (478)
.+||+++++|+|+|++| ...+.+..|+.|++.+...++.+|.++++|+|+.|||+.++++|||++.+++++..+.++|+
T Consensus 119 ~~lt~~a~~~~l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFn 197 (571)
T KOG1237|consen 119 FGLTLSAMIPALLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFN 197 (571)
T ss_pred HHHHHHHHhhhcCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchh
Confidence 46899999999999999 22222358999999999999999999999999999999999999999888888888999999
Q ss_pred HHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCC
Q 011747 82 WYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLP 161 (478)
Q Consensus 82 ~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~ 161 (478)
|||+.+|+|++++.++..|+|++.||.++|+++++.|++++++|+.|++.|++++|.|+|++.+.||++++.+|++...+
T Consensus 198 W~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~ 277 (571)
T KOG1237|consen 198 WFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVS 277 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887666
Q ss_pred CCCCCCCccccCCCCcccccccCCccchhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHH
Q 011747 162 QGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGII 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~ 241 (478)
. +.. .+ +.. ........++++++++|+|++..+.+. +++...++|++|+.++|||+|.+++++|+|...++
T Consensus 278 ~---~~~-~~-~~~--~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~ 348 (571)
T KOG1237|consen 278 L---DPE-EL-YYD--CTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTII 348 (571)
T ss_pred C---cch-hc-ccc--ccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCceehhhhhhhhhhhHHHHHHHH
Confidence 5 221 11 110 011123345778899999998765433 44556789999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHhhhccCCCCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHH
Q 011747 242 SLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFS 321 (478)
Q Consensus 242 f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~ 321 (478)
||+++.|+.|.++.|+.+|||++++++++|+++++++..+.++++.|+++++.+|+.+|.++++.++++++||++|++++
T Consensus 349 ~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~s 428 (571)
T KOG1237|consen 349 YSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLS 428 (571)
T ss_pred HHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHH
Confidence 99999999999999999999999845999999999999999999999999999999999998877899999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcc--CCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHH
Q 011747 322 ILSMIVAGLVERGRRASAHL--HPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASY 399 (478)
Q Consensus 322 ~ls~~~~~~~~~~~~~~~~~--~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~ 399 (478)
.++|.+++++|.+|++.+.+ +..+++|++||+|||+++|+||+|.+++++||+|+|||++|||+.+++|+++.|+|++
T Consensus 429 i~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~ 508 (571)
T KOG1237|consen 429 ILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNY 508 (571)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886654 2247899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCcccc-cCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 011747 400 LSSLLITIVHGVTARHGHPDWLT-NDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQ 462 (478)
Q Consensus 400 l~~~l~~~~~~~~~~~~~~~w~~-~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~ 462 (478)
++.++++++...+.+ ..+|++ +|+|++|+++|||+++++..++.+.|..++++|++++.++
T Consensus 509 lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 509 LSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 999999999887643 347999 9999999999999999999999999999999999988764
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-55 Score=450.96 Aligned_cols=363 Identities=19% Similarity=0.230 Sum_probs=288.5
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i 113 (478)
.....++++|++|++|+|++|||+++++||||+++|| |||.+|++||+++|+|++++|++++++++++||+.+|++
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4577899999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccceeeeC--CCCCchhhH----------HHHHHHHHHhcccCCCCCCCCCCccccCCCCccccc
Q 011747 114 PTVLMIGAIILFLVGKKLYVLVE--PEGSIFSGI----------GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVL 181 (478)
Q Consensus 114 ~~v~m~~~liifl~g~~~~~~~~--p~g~pl~~~----------~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (478)
++++|.+++++|++++|++.... |..+|.+.- .+++....... .
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------l--------- 246 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL---------------L--------- 246 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH---------------H---------
Confidence 99999999999999999887653 333443210 01111100000 0
Q ss_pred ccCCccchhhhh-hh----hhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHH
Q 011747 182 SKLPLTHQFRFL-NK----AAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQ 256 (478)
Q Consensus 182 ~~~~~~~~~~~l-~~----a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~q 256 (478)
..+.+++. .. ..+.+..+. ..| .+.+ |||||++.++|++++.++||++|+|++|++++|
T Consensus 247 ----~~~~~~~~~~~~~i~~~~~~~~~~--------~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~ 310 (498)
T COG3104 247 ----NQNTFSGVLLVISILIAIIYFAEA--------FRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLY 310 (498)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH--------hcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 00000110 00 001000000 011 1234 899999999999999999999999999999999
Q ss_pred Hh-hhccCCCCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhh
Q 011747 257 AM-KMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGR 335 (478)
Q Consensus 257 a~-~md~~~~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~ 335 (478)
+. +.||+.. |+++|++|+|++||++|++++|+++++|+|+.++. ++++++.||++|+++++++|++........
T Consensus 311 a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~ps~~~KFalGl~l~g~~fl~l~~~~~~~ 385 (498)
T COG3104 311 ADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----KQPSTPIKFALGLILAGLGFLILLLAGIWF 385 (498)
T ss_pred HHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 95 6788866 79999999999999999999999999999987764 368999999999999999999887775432
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccC
Q 011747 336 RASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARH 415 (478)
Q Consensus 336 ~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~ 415 (478)
.+ ..+.+|+||++++|+++++||+|++|+|+|+++++||++++|++||+|+++.++|+.+++.+.++....
T Consensus 386 ~~-----~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~---- 456 (498)
T COG3104 386 GG-----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVT---- 456 (498)
T ss_pred cC-----CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccccccc----
Confidence 11 135799999999999999999999999999999999999999999999999999999999887632210
Q ss_pred CCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 011747 416 GHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG 460 (478)
Q Consensus 416 ~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~ 460 (478)
.+..+......+|+.++.+.++..++...++++.+|...
T Consensus 457 ------~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~ 495 (498)
T COG3104 457 ------DPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMK 495 (498)
T ss_pred ------chhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhc
Confidence 001122234679999999999999999999988876544
No 3
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=1.3e-46 Score=408.74 Aligned_cols=355 Identities=26% Similarity=0.458 Sum_probs=298.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec-------cc
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-------SW 107 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~-------g~ 107 (478)
+...++++|+++++|+|++|||++++++|||+++++ ++++++|+||||++|+|+++++++++++++++ ||
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 455688999999999999999999999999987543 47999999999999999999999999998543 69
Q ss_pred hhHhHHHHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCcc
Q 011747 108 VIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLT 187 (478)
Q Consensus 108 ~~~F~i~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (478)
+++|++++++|++++++|+.++|+|++.+|.++++.++.+++..+.+++...... .
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------------------------~ 216 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------------------------H 216 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------------------------c
Confidence 9999999999999999999999999888888999988889988887764321110 0
Q ss_pred chhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCC
Q 011747 188 HQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPK 267 (478)
Q Consensus 188 ~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g 267 (478)
...+|+|++... +.++++||+|++++++++++..++||++|+|++|++++|+.+||++++ +
T Consensus 217 ~~~~~ld~a~~~------------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g 277 (654)
T TIGR00926 217 WPLHWLDYAKDK------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-G 277 (654)
T ss_pred cchhHHHHhccc------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-C
Confidence 113677765421 235678999999999999999999999999999999999999999887 8
Q ss_pred cccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhh----------
Q 011747 268 FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRA---------- 337 (478)
Q Consensus 268 ~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~---------- 337 (478)
+++|++++|++|+++++++.|+++..++|.++|++. ++++++|+++|++++++++++++++|.++..
T Consensus 278 ~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~ 354 (654)
T TIGR00926 278 FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANE 354 (654)
T ss_pred EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcc
Confidence 999999999999999999999999999999987643 4799999999999999999998887543210
Q ss_pred ---------------------------------h----------------------------------------------
Q 011747 338 ---------------------------------S---------------------------------------------- 338 (478)
Q Consensus 338 ---------------------------------~---------------------------------------------- 338 (478)
.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (654)
T TIGR00926 355 IFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELE 434 (654)
T ss_pred eEEEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeec
Confidence 0
Q ss_pred -------------hc----------------------------c------------------------------------
Q 011747 339 -------------AH----------------------------L------------------------------------ 341 (478)
Q Consensus 339 -------------~~----------------------------~------------------------------------ 341 (478)
.+ +
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (654)
T TIGR00926 435 PKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANT 514 (654)
T ss_pred CCceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeee
Confidence 00 0
Q ss_pred ----------------C--C-------------------------CCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 011747 342 ----------------H--P-------------------------MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF 378 (478)
Q Consensus 342 ----------------~--g-------------------------~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~a 378 (478)
. | ++++|++||+|||+++++||++.+++++||.|+||
T Consensus 515 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~ 594 (654)
T TIGR00926 515 CDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQA 594 (654)
T ss_pred cccccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhC
Confidence 0 0 23478999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011747 379 PDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 455 (478)
Q Consensus 379 P~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~ 455 (478)
|++||+..+++|.++.++|+.+...+...-... +....|.++|.++++..++|..+++.|
T Consensus 595 p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 595 PPNMKSVLQALWLLTVAIGNLIVVVIAEFENFS-----------------VQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987775422110 134568889999999999999999866
No 4
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=4.3e-47 Score=390.55 Aligned_cols=339 Identities=36% Similarity=0.583 Sum_probs=239.4
Q ss_pred CchhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHh
Q 011747 32 NSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGF 111 (478)
Q Consensus 32 ~~~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F 111 (478)
++.+.+.+++||+++++|+|++|||+++++||||++++ ++++|++|+||||++|+|++++.++++|+++++||+++|
T Consensus 29 ~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f 105 (372)
T PF00854_consen 29 SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGF 105 (372)
T ss_dssp -----CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhh
Confidence 33567789999999999999999999999999999874 248999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccceeee-CCCCCchhh-HHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccch
Q 011747 112 GIPTVLMIGAIILFLVGKKLYVLV-EPEGSIFSG-IGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQ 189 (478)
Q Consensus 112 ~i~~v~m~~~liifl~g~~~~~~~-~p~g~pl~~-~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (478)
++|+++|++++++|+.++++|++. +|.++++.+ ...++..+.+++....+. +.. ...+..... ........
T Consensus 106 ~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~---~~~~~~~~ 178 (372)
T PF00854_consen 106 GIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPK---GSS-WLDWALFQY---SERSIFGI 178 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-H---HHH-HHHHHHHHH---CCCCCCCC
T ss_pred hHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhccccc---chH-HHHHhhhhh---hhhhhhhh
Confidence 999999999999999999999888 778888887 444555555554433221 000 000000000 00000000
Q ss_pred hhhhhhhhhhcccCCCCCCCCCCccccc-ccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCC-
Q 011747 190 FRFLNKAAMIVDNNELKPDGTPVNQWRL-CSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPK- 267 (478)
Q Consensus 190 ~~~l~~a~~~~~~~~~~~~g~~~~~~~~-~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g- 267 (478)
....+ +....... ...|.. ++++++++.|.+.+.+|.+.+.++|+..+.|..+....|..+||+.++ +
T Consensus 179 ~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 248 (372)
T PF00854_consen 179 IVFIR-AAVIFFPE--------IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GL 248 (372)
T ss_dssp CCHHH-HHHHHCCC--------HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS---
T ss_pred hhhcc-chhhhhhh--------hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cc
Confidence 00111 11111100 011111 456788999999999999999999999999999999999999999888 6
Q ss_pred cccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcc
Q 011747 268 FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQV 347 (478)
Q Consensus 268 ~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~ 347 (478)
+++|+++++++|++++++++|+++++++|++++ ++++++++|+++|++++.+++++++.+|.+|.....++ +..
T Consensus 249 ~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~----~~~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~--~~~ 322 (372)
T PF00854_consen 249 FGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR----GIQPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPC--GKV 322 (372)
T ss_dssp ----SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH------TT-
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhHHhhh----cccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc--CCC
Confidence 999999999999999999999999999999873 23589999999999999999999999998766443332 367
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhH
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGF 396 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~ 396 (478)
+.+|++|.|++++++|++++++|++.+++.||+++++.|||+|+...++
T Consensus 323 ~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~ 371 (372)
T PF00854_consen 323 SPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF 371 (372)
T ss_dssp -THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred ChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence 7799999999999999999999999999999999999999999988654
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=5.1e-44 Score=376.83 Aligned_cols=377 Identities=14% Similarity=0.161 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHH
Q 011747 37 GVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTV 116 (478)
Q Consensus 37 ~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v 116 (478)
..+++++.++++|+|++|||.+++++|+|+++|+ +|+++|+++|+++|+|++++|++++++++++||+.+|.++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 3466788899999999999999999999988765 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccceeeeCC-CCCchhh--HHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747 117 LMIGAIILFLVGKKLYVLVEP-EGSIFSG--IGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL 193 (478)
Q Consensus 117 ~m~~~liifl~g~~~~~~~~p-~g~pl~~--~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (478)
+|++++++++.++|.+.+..+ ..+|.++ ..+.+.....--..-.+. .... .+ .+.....+
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---------~~-~~~~~~~~ 239 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPA-------LITV---------LF-WKEWSVYA 239 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHH-------HHHH---------HH-HHHHHHHH
Confidence 999999999998887754311 1123211 000000000000000000 0000 00 00000000
Q ss_pred -hhhh---hhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHh-hhccCCCCCc
Q 011747 194 -NKAA---MIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGPKF 268 (478)
Q Consensus 194 -~~a~---~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~-~md~~~~~g~ 268 (478)
-.+. ..+.. ... .+..+.+|+||+..+++++++.++||+.|+|++|+++++++ ++|++++ ||
T Consensus 240 ~~~~~~~~~~~~~----------~~~--~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~ 306 (493)
T PRK15462 240 LIVATIIGLGVLA----------KIY--RKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GY 306 (493)
T ss_pred HHHHHHHHHHHHH----------HHH--HhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ce
Confidence 0000 00000 000 01123478999999999999999999999999999999995 8999998 99
Q ss_pred ccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcch
Q 011747 269 QIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVS 348 (478)
Q Consensus 269 ~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s 348 (478)
++|++|+|++||++|+++.|++.++|.++.+| +++++.+.|+++|++++++||+++.+..... .++ ..+|
T Consensus 307 ~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~~--~~~s 376 (493)
T PRK15462 307 TVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGLGLMSAGFCILTLSARWS----AMY--GHSS 376 (493)
T ss_pred eeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc----CCC--CCcC
Confidence 99999999999999999999999998655432 2357999999999999999999988765421 112 2599
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHh-hHHHHHHHHHHHHhhcccccCCCCcccccCCCC
Q 011747 349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSF-GFASYLSSLLITIVHGVTARHGHPDWLTNDIDA 427 (478)
Q Consensus 349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~-a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~ 427 (478)
++|++..|+++|+||++.+|+|++++++.||++++|++||+|+++. ++|+.+++.+.+++...+.... +. ..+++
T Consensus 377 ~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~-~~-~~~~~-- 452 (493)
T PRK15462 377 LPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDAS-GA-INYSI-- 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcc-cc-ccchh--
Confidence 9999999999999999999999999999999999999999999965 8999999999987753210000 00 00011
Q ss_pred cchHHHHHHHHHHHHHH-HH-HHHHhhhccccccCC
Q 011747 428 GRLDYFYFLIAGLGGLN-IV-YFLYCARRYRYKSGI 461 (478)
Q Consensus 428 ~~~~~~f~~la~l~~v~-~v-if~~~~~~~~~~~~~ 461 (478)
..+..+|..++.++++. ++ .+.-+....|.|+|.
T Consensus 453 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (493)
T PRK15462 453 NAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRA 488 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 13456888888777665 43 444455556666665
No 6
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=1.2e-39 Score=346.56 Aligned_cols=372 Identities=12% Similarity=0.121 Sum_probs=276.6
Q ss_pred HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHH
Q 011747 38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVL 117 (478)
Q Consensus 38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~ 117 (478)
.++++++++++|+|++|||.+++++|+|+++++ +|+++|+++|+++|+|+++++.+++++.+++||+++|.+++++
T Consensus 107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 466889999999999999999999999987653 5788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccceeee--CCCCCchhh--HHHHH------HHHHHhcccCCCCCCCCCCccccCCCCcccccccCCcc
Q 011747 118 MIGAIILFLVGKKLYVLV--EPEGSIFSG--IGQVL------VAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLT 187 (478)
Q Consensus 118 m~~~liifl~g~~~~~~~--~p~g~pl~~--~~~vl------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (478)
+.++++.++.+++++++. +|++++... ..... ...... . .. .. ...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~-~---~~---~~--------~~~--------- 238 (489)
T PRK10207 183 LIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAW-L---MH---NV--------EVA--------- 238 (489)
T ss_pred HHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHH-H---Hh---hh--------hHH---------
Confidence 999999998888777553 233333311 11000 000000 0 00 00 000
Q ss_pred chhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHh-hhccCCCC
Q 011747 188 HQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGP 266 (478)
Q Consensus 188 ~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~-~md~~~~~ 266 (478)
. ..+..+.+... . ...++..+.+ ..++++.+..+++++..++||+.|+|+.+++++|+. ++|++..
T Consensus 239 -~-~~~~~~~~i~~-------~--~f~~~~~~~~-~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~- 305 (489)
T PRK10207 239 -N-LVLIVLSIVVT-------I--IFFREAFKLD-KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL- 305 (489)
T ss_pred -H-HHHHHHHHHHH-------H--HHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-
Confidence 0 00000000000 0 0000001112 345777888899999999999999999999999996 6888777
Q ss_pred CcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCc
Q 011747 267 KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ 346 (478)
Q Consensus 267 g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~ 346 (478)
|+++|++++|++||++++++.|+.++++ +.++|+ +.++++++|+++|+++++++++++++.+... ...+ ..
T Consensus 306 G~~i~~~~~~~~n~~~iii~~pl~~~l~-~rl~~r---~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~--~~ 376 (489)
T PRK10207 306 GFSINPVSFQALNPFWVVVASPILAGIY-THLGSK---GKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQ--GL 376 (489)
T ss_pred ceEECHHHHHhHhHHHHHHHHHHHHHHH-HHHhhC---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCCC--Cc
Confidence 8999999999999999999999998755 444433 3468999999999999999998876654311 1111 25
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCC
Q 011747 347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDID 426 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln 426 (478)
+|+||+++.|+++|+||++++|+++|++++.+|++++|++||+|+++.++|+.+|+.+++.++.... ..++.. .
T Consensus 377 ~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~--~~~~~~----~ 450 (489)
T PRK10207 377 TSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN--ITDPLE----T 450 (489)
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccchh----h
Confidence 7899999999999999999999999999999999999999999999999999999999987753210 000000 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccc
Q 011747 427 AGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLE 465 (478)
Q Consensus 427 ~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~~~ 465 (478)
++.+.++|..+++.+++.+++++++.++++|..+.+|+|
T Consensus 451 ~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 489 (489)
T PRK10207 451 LPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTPESH 489 (489)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 123578999999999999999999999999987776654
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=5.3e-38 Score=333.15 Aligned_cols=361 Identities=13% Similarity=0.119 Sum_probs=270.2
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHH
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT 115 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~ 115 (478)
.+.+++++.++++|+|+++||.+++++|+++++++ ++|+++|+++|+++|+|+++++.+++++++++||+++|.+++
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~ 178 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA 178 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 45677888999999999999999999999987652 258889999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHHhcccceeeeCCCCCchhhH-----H--HH----HHHHHHhcccCCCCCCCCCCccccCCCCcccccccC
Q 011747 116 VLMIGAIILFLVGKKLYVLVEPEGSIFSGI-----G--QV----LVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKL 184 (478)
Q Consensus 116 v~m~~~liifl~g~~~~~~~~p~g~pl~~~-----~--~v----l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (478)
+.+++++++++..++.+++.++++++.++. . .. +....+.... ... . . ..
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~-------~-~~------ 239 (475)
T TIGR00924 179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWL-MHH----V-------V-IA------ 239 (475)
T ss_pred HHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH-Hhc----c-------H-HH------
Confidence 999999999988888776554433332210 0 00 0000110000 000 0 0 00
Q ss_pred CccchhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHH-hhhccC
Q 011747 185 PLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQA-MKMNRH 263 (478)
Q Consensus 185 ~~~~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa-~~md~~ 263 (478)
+....-...+...+..... .++ +.++ +|+++...+++++++.++||++|+|+.|++.+|+ +++|++
T Consensus 240 --~~~~~~~~~~~~~~~~~~~------~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~ 306 (475)
T TIGR00924 240 --NILLMTVTLAVIIFFFRLA------FKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHE 306 (475)
T ss_pred --HHHHHHHHHHHHHHHHHHH------Hhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc
Confidence 0000000011111100000 000 1122 3456667799999999999999999999998877 579999
Q ss_pred CCCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 011747 264 LGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP 343 (478)
Q Consensus 264 ~~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g 343 (478)
++ ++++|+++++++|++++++++|+++++|.+ ++|++ .++++..|+++|+++.+++++.++++... .. .
T Consensus 307 ~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~-l~~~~---~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~--~ 375 (475)
T TIGR00924 307 ML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTR-LGRKG---KDPTTPLKFTLGMLFCGASFLTFAASIWF----AD--A 375 (475)
T ss_pred cc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHH-HHhCC---CCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cC--C
Confidence 87 899999999999999999999999976643 33332 24688999999999999999988876321 11 1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCccccc
Q 011747 344 MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN 423 (478)
Q Consensus 344 ~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~ 423 (478)
..++|+||++++|+++|+||++++|+++++++++||+++||+++|+|.+..++|+.+++.+........
T Consensus 376 ~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----------- 444 (475)
T TIGR00924 376 GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----------- 444 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 236899999999999999999999999999999999999999999999999999999999987654321
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011747 424 DIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 458 (478)
Q Consensus 424 ~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~ 458 (478)
....+|..+++++++.+++++.+.++.+|.
T Consensus 445 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 474 (475)
T TIGR00924 445 -----GVTGVFGKIGLVTLLVGVVMALMVPWLNRM 474 (475)
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 134688889999999999999999888763
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=2.4e-37 Score=330.12 Aligned_cols=369 Identities=13% Similarity=0.164 Sum_probs=273.7
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHH
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT 115 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~ 115 (478)
...+++++.++++|.|+++|+.+++++|+|+++++ +++++++++|+++|+|+++++.+.+++.+++||+++|.+++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 45577888999999999999999999999986643 57789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccceeee--CCCCCchhhH------HHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCcc
Q 011747 116 VLMIGAIILFLVGKKLYVLV--EPEGSIFSGI------GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLT 187 (478)
Q Consensus 116 v~m~~~liifl~g~~~~~~~--~p~g~pl~~~------~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (478)
+.++++++.++..++.+++. +|+++|.... ..+.......... +.+... .+
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--------~~ 246 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWL-------------LHNQEI--------AR 246 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHH-------------HhcchH--------HH
Confidence 99999999888777766543 2333333211 1111111110000 000000 00
Q ss_pred chhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHh-hhccCCCC
Q 011747 188 HQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGP 266 (478)
Q Consensus 188 ~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~-~md~~~~~ 266 (478)
....+......... ....+. .+.+|+++.+..+++++..++||+.|.|+.+.++.|+. ++|++..
T Consensus 247 ~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~- 312 (500)
T PRK09584 247 MALGVVALGIVVIF------------GKEAFA-MKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL- 312 (500)
T ss_pred HHHHHHHHHHHHHH------------HHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-
Confidence 00000000000000 000011 12356778888888999999999999999999999995 5788877
Q ss_pred CcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCc
Q 011747 267 KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ 346 (478)
Q Consensus 267 g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~ 346 (478)
|+.+|++++|++|++++++++|+++++|. |..+ ++++.+|+++|+++.+++|+++++.... ..+ ...
T Consensus 313 g~~i~~~~~~s~n~i~iil~~p~~~~~~~----~l~~---r~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~--~~~ 379 (500)
T PRK09584 313 GIAVEPEQYQALNPFWIMIGSPILAAIYN----KMGD---RLPMPHKFAIGMVLCSGAFLVLPLGAKF----AND--AGI 379 (500)
T ss_pred ceEECHHHHHHHhHHHHHHHHHHHHHHHH----HhCc---CCCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC--CCc
Confidence 89999999999999999999999998763 3322 2468899999999999999998776532 111 246
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCC-
Q 011747 347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDI- 425 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~l- 425 (478)
+|++|++++|+++|+||++++|+++++++++||+++||++||+|+++.++|+.+++.+.+.+.... -..+..
T Consensus 380 vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~-------~~~~~~~ 452 (500)
T PRK09584 380 VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPD-------NVTDPLM 452 (500)
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccccchh
Confidence 999999999999999999999999999999999999999999999999999999999987654211 000110
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCCc
Q 011747 426 DAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQS 463 (478)
Q Consensus 426 n~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~ 463 (478)
..+.+..+|..+++++++.++++++++++.+|..+.++
T Consensus 453 ~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~~~ 490 (500)
T PRK09584 453 SLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQDDS 490 (500)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11225678899999999999999999999998877655
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.32 E-value=3e-10 Score=118.34 Aligned_cols=305 Identities=11% Similarity=-0.040 Sum_probs=173.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.+++...+.+++.|...+...+...|.++++ ++.++..+++++.++|..+++.+.+++.+..||++.|.+.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 3455556666667777877788888888877643 4788889999999999999999988887778999999988
Q ss_pred HHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhh
Q 011747 115 TVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN 194 (478)
Q Consensus 115 ~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (478)
++..+++.+..+..+ +.+|...+ +. .. . . +..+
T Consensus 183 ~~~~~~~~~~~~~l~----~~~~~~~~-------------------~~---~~----~----~-------------~~~~ 215 (417)
T PRK10489 183 AAGTFITLLPLLRLP----ALPPPPQP-------------------RE---HP----L----R-------------SLLA 215 (417)
T ss_pred HHHHHHHHHHHHhCC----CCCCCCcc-------------------cc---cc----h----H-------------HHHH
Confidence 877776655443211 11110000 00 00 0 0 0000
Q ss_pred hhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc-
Q 011747 195 KAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG- 273 (478)
Q Consensus 195 ~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~- 273 (478)
.+ ..+-..+.+.. +++.... +.......+.+ ...+....+ .++.
T Consensus 216 -------------------~~-----~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~---p~~~~~~~g----~~~~~ 260 (417)
T PRK10489 216 -------------------GF-----RFLLASPVVGG---IALLGGL-LTMASAVRVLY---PALADEVWQ----MGAAQ 260 (417)
T ss_pred -------------------HH-----HHHHcChHHHH---HHHHHHH-HHHHHhHHHhh---HHHHHhccC----CChhH
Confidence 00 00000111111 1111111 11111111111 111221121 2222
Q ss_pred --ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHH
Q 011747 274 --TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW 351 (478)
Q Consensus 274 --~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~w 351 (478)
++.....+..++...+..+ +.++. ++.+-+.+++++.+++++..... -+.+.
T Consensus 261 ~g~~~~~~~~g~~ig~~~~~~-----l~~~~------~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~ 314 (417)
T PRK10489 261 IGLLYAAVPLGAALGALTSGW-----LAHSA------RPGLLMLLSTLGSFLAVGLFGLM---------------PMWIL 314 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----hhhcc------CcchHHHHHHHHHHHHHHHHHcc---------------chHHH
Confidence 2333333444434333332 22211 12223556666666665433211 13344
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchH
Q 011747 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD 431 (478)
Q Consensus 352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~ 431 (478)
.+...++.+++.....+....+..+..|++.||..+|++.....+|..+|+.+.+.+.+.. + ..
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-------------g---~~ 378 (417)
T PRK10489 315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-------------T---PV 378 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-------------c---hh
Confidence 4556778888888888888888999999999999999999988889999888887665321 1 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCcccccCc
Q 011747 432 YFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQND 469 (478)
Q Consensus 432 ~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~~~~~~~ 469 (478)
..++..+++.++..++.....++.|+++.|+.++|..|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (417)
T PRK10489 379 ASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASD 416 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCC
Confidence 34555666666666666677788888888888777766
No 10
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.12 E-value=3.1e-09 Score=110.46 Aligned_cols=261 Identities=10% Similarity=-0.017 Sum_probs=153.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.+++.|.+.|...+.+.|.++++ +|.+++++.+...|+|..+++.+.+++. ++||+..|.+.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 4566777788888999989999999998888653 5889999999999999999999999888 68999999988
Q ss_pred HHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhh
Q 011747 115 TVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN 194 (478)
Q Consensus 115 ~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (478)
++..++..++.....+ +++.++. .. +. . + .+.
T Consensus 171 ~~~~~~~~i~~~~~~~-----~~~~~~~------------------~~---~~----~---------------~--~~~- 202 (400)
T PRK11646 171 AVLFVLAAAFNAWLLP-----AYKLSTV------------------RT---PV----R---------------E--GMT- 202 (400)
T ss_pred HHHHHHHHHHHHHhCC-----ccccccc------------------ch---hh----H---------------H--HHH-
Confidence 7776665544332211 0000000 00 00 0 0 000
Q ss_pred hhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCcc
Q 011747 195 KAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGT 274 (478)
Q Consensus 195 ~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~~ 274 (478)
+-..+++ .+. +.+....++..+.|..+. ....+....+ ...-.++
T Consensus 203 --------------------------~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~---~p~~~~~~~~--~~~~~g~ 247 (400)
T PRK11646 203 --------------------------RVLRDKR-FVT---YVLTLTGYYMLAVQVMLM---LPIMVNDIAG--SPSAVKW 247 (400)
T ss_pred --------------------------HHHcCch-HHH---HHHHHHHHHHHHHHHHHh---hhhhHHhhcC--CchHHHH
Confidence 0001111 111 111122233333332211 1111211111 1011123
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747 275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP 354 (478)
Q Consensus 275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~ 354 (478)
+..++.+..+.+.-...+ +..|+ .+..+++.+|+++.+++++..+... +.++.+.
T Consensus 248 l~~~~~~~~~~~~~~~~~----~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~---------------~~~~~~~ 302 (400)
T PRK11646 248 MYAIEACLSLTLLYPIAR----WSEKR------FRLEHRLMAGLLIMSLSMFPIGMVS---------------NLQQLFT 302 (400)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHh------cchhHHHHHHHHHHHHHHHHHHHhh---------------hHHHHHH
Confidence 333344333322222222 22221 1233456777777777765443221 2333444
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747 355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~ 410 (478)
..++.++++....|.....+.+.+|++.+|..+|++.+..++|..+|+.+.+...+
T Consensus 303 ~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 303 LICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred HHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 55778899999999999999999999999999999999999999999888877654
No 11
>PRK03545 putative arabinose transporter; Provisional
Probab=99.12 E-value=1.6e-08 Score=104.41 Aligned_cols=84 Identities=10% Similarity=0.056 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++-.+.+++.|.+-|...+++.|.++++ +|.++++++..+.++|..+++.+.+.+.+.+||++.|.+.
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 169 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI 169 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence 4566677777888888888888889999988754 4888999999999999999998888888888999999998
Q ss_pred HHHHHHHHHH
Q 011747 115 TVLMIGAIIL 124 (478)
Q Consensus 115 ~v~m~~~lii 124 (478)
++..++..+.
T Consensus 170 ~~~~~l~~~~ 179 (390)
T PRK03545 170 GGGALITLLL 179 (390)
T ss_pred HHHHHHHHHH
Confidence 7766555444
No 12
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.08 E-value=2.4e-08 Score=101.16 Aligned_cols=86 Identities=21% Similarity=0.135 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.++|.|..-+...+++.|.++++ +|.++++++..+.++|.++++.+.+++.++.||++.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 5677788888999999999999999999988754 5889999999999999999999888887889999999988
Q ss_pred HHHHHHHHHHHH
Q 011747 115 TVLMIGAIILFL 126 (478)
Q Consensus 115 ~v~m~~~liifl 126 (478)
++..++..+..+
T Consensus 155 ~~~~~~~~~~~~ 166 (399)
T TIGR00893 155 GVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHhh
Confidence 776666555443
No 13
>PRK10054 putative transporter; Provisional
Probab=99.05 E-value=8e-09 Score=107.23 Aligned_cols=83 Identities=11% Similarity=0.152 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHH
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT 115 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~ 115 (478)
.+.++++..+.+.+.+.+.|...+...|.++++ +|.+++++.|...|+|..+++.+.+++.+ .||+..|.+++
T Consensus 96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~ 168 (395)
T PRK10054 96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA 168 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence 334444444556666677778888888888644 58889999999999999999988888764 79999999988
Q ss_pred HHHHHHHHHH
Q 011747 116 VLMIGAIILF 125 (478)
Q Consensus 116 v~m~~~liif 125 (478)
+..+++++..
T Consensus 169 ~~~~i~~i~~ 178 (395)
T PRK10054 169 ICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHH
Confidence 8777765443
No 14
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.02 E-value=5.9e-08 Score=100.66 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.+++...+.+++.|..-+...+...|.++++ ++.++.++.+.+.++|..+++.+.+++.+..||+..|.+.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 3455666677778888887788888888888654 3667788888888899999998888887888999999987
Q ss_pred HHHHHHHHHHH
Q 011747 115 TVLMIGAIILF 125 (478)
Q Consensus 115 ~v~m~~~liif 125 (478)
++..+++.+..
T Consensus 174 ~~~~~~~~~~~ 184 (406)
T PRK15402 174 AALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHH
Confidence 77776665543
No 15
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.01 E-value=3.1e-08 Score=102.26 Aligned_cols=84 Identities=13% Similarity=-0.018 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.+++.+. -|...+...|+++++ +|.++.++++.+.++|.++++.+.+++.+..||+..|.+.
T Consensus 106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 106 NIWQFLILRALLGLLGGF-VPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 455666666777777554 466667778877543 4778889999999999999999988887778999999988
Q ss_pred HHHHHHHHHHH
Q 011747 115 TVLMIGAIILF 125 (478)
Q Consensus 115 ~v~m~~~liif 125 (478)
++..+++.+..
T Consensus 179 ~~~~~~~~~~~ 189 (408)
T PRK09874 179 ASVLFLCFLVT 189 (408)
T ss_pred HHHHHHHHHHH
Confidence 87766665544
No 16
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.00 E-value=6.3e-08 Score=99.84 Aligned_cols=279 Identities=12% Similarity=0.080 Sum_probs=162.4
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i 113 (478)
.+.+.++++.++.+.+.+..-|...++..+ ++ +++.+.+.+.....++|..+++.+.+++.+++||+..|.+
T Consensus 92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~-------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 92 HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQ-------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HH-------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 346666666666777777777776666532 22 1466779999999999999999999999888999999988
Q ss_pred HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747 114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL 193 (478)
Q Consensus 114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (478)
.++..++.++.+.. ++ +.+|+++. + .. .. + .. ..+
T Consensus 164 ~~~~~~~~~~~~~~-~~---~~~~~~~~--~----------------~~---~~-----~-------------~~-~~~- 198 (382)
T TIGR00902 164 LTAGLAFMLIGFLI-KP---TIPPKDAI--P----------------ED---ES-----Q-------------GD-SAF- 198 (382)
T ss_pred HHHHHHHHHHHHHc-CC---CCCCCccc--c----------------cc---cc-----c-------------cc-hhH-
Confidence 66553333332221 11 00111000 0 00 00 0 00 000
Q ss_pred hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc
Q 011747 194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG 273 (478)
Q Consensus 194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~ 273 (478)
.++-..|+ ...+.+...+++..+.+..+....+-. | .+ .++.
T Consensus 199 ---------------------------~~~l~~~~---~~~~l~~~~l~~~~~~~~~~~~~~~l~--~--~g----~s~~ 240 (382)
T TIGR00902 199 ---------------------------IALLKNPM---NLRFLAAVCLIQGAHAAYYGFSAIYWQ--A--AG----ISAS 240 (382)
T ss_pred ---------------------------HHHHcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHH--H--CC----CCHh
Confidence 00000122 222333344455555555554332221 2 22 3333
Q ss_pred c---cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHH
Q 011747 274 T---VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVF 350 (478)
Q Consensus 274 ~---~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~ 350 (478)
+ +..++.+..++..++.++ +.+|+ ++.+-+.+|+++.++.++..+.. .+.+
T Consensus 241 ~~g~l~~~~~~~~i~~~~~~~~----l~~r~-------g~~~~l~~~~~~~~~~~~~~~~~---------------~~~~ 294 (382)
T TIGR00902 241 ATGLLWGIGVLAEIIIFAFSNK----LFQNC-------SARDLLLISAIACVGRWAIIGAI---------------EAFP 294 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH----HHhhC-------CHHHHHHHHHHHHHHHHHHHHhH---------------hhHH
Confidence 3 333344444444333332 23333 34445677888888877655432 2445
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH-HHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcc
Q 011747 351 WLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF-CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGR 429 (478)
Q Consensus 351 wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~-l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~ 429 (478)
+++..-+++++++.+..+..+.++.++ |++.++..||++. ++.++|..+++.+++...+. . +
T Consensus 295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-------------~--g- 357 (382)
T TIGR00902 295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-------------L--G- 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------c--c-
Confidence 555556999999999999999999988 9999999999986 56788888888888766542 1 1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 011747 430 LDYFYFLIAGLGGLNIVY 447 (478)
Q Consensus 430 ~~~~f~~la~l~~v~~vi 447 (478)
...|+..+++++++.++
T Consensus 358 -~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 -AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 23567777777755433
No 17
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.00 E-value=3.5e-08 Score=99.45 Aligned_cols=268 Identities=10% Similarity=-0.003 Sum_probs=156.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.+++.|...|...++..|.++++ +|.+.++++..+.++|.++++.+.+++.+..||+..|.+.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5677888888999999999999999999998754 5899999999999999999999988888888999999988
Q ss_pred HHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhh
Q 011747 115 TVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN 194 (478)
Q Consensus 115 ~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (478)
++..+++.+..+..+. +++..++.. +. . + + ...
T Consensus 165 ~~~~~~~~~~~~~~~~----~~~~~~~~~-----------------~~----~---------~----------~---~~~ 197 (365)
T TIGR00900 165 AVGFAISALLIVSVRI----PELAASEIQ-----------------AL----S---------N----------A---VLR 197 (365)
T ss_pred HHHHHHHHHHHHhccc----ccCCCcccc-----------------cc----c---------h----------h---HHH
Confidence 8777666554433211 100000000 00 0 0 0 000
Q ss_pred hhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCcc
Q 011747 195 KAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGT 274 (478)
Q Consensus 195 ~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~~ 274 (478)
.. .+...+.++-..+..+.+...+++..+......+. ........+ .++.+
T Consensus 198 ~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~ 248 (365)
T TIGR00900 198 DT-----------------------REGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALF--PYVQSKYLG----RGSTH 248 (365)
T ss_pred HH-----------------------HhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHhC----CchHH
Confidence 00 00000011101122222222233333222221111 111111111 22222
Q ss_pred ---cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHH
Q 011747 275 ---VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW 351 (478)
Q Consensus 275 ---~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~w 351 (478)
+.....+..++..++..+ ..+|.+ ..+-+.+++++.+++++...... + +.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~----l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~ 303 (365)
T TIGR00900 249 YGWVLAAFGLGALLGALLLGL----LGRYFK-------RMALMTGAIFVIGLAILVVGLTP-------------P-NFPL 303 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhc-------hhHHHHHHHHHHHHHHHHHHhhc-------------h-hHHH
Confidence 333333333333333332 222321 12233445555555554433221 1 3555
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
.+...++.+++.-...+...+...+..|++.|+..+|++.....+|..+++.+.+...
T Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 304 FLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677899999999999999999999999999999999999999999999988876554
No 18
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.98 E-value=1.1e-07 Score=98.30 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.+.++..+.++|.|...|...+...|.++++ +|.+++++++.+.++|.++++.+...+.+..+|+..|.+.
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 4566677778889999999999999999998654 4889999999999999999998887888888999999987
Q ss_pred HHHHHHHHHH
Q 011747 115 TVLMIGAIIL 124 (478)
Q Consensus 115 ~v~m~~~lii 124 (478)
++..++..++
T Consensus 176 ~~~~~~~~~~ 185 (406)
T PRK11551 176 GVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHH
Confidence 7665555443
No 19
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.96 E-value=1.5e-07 Score=98.29 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhcee---eeEEeeccchhHh
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL---VYIQDSVSWVIGF 111 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~---~~i~~~~g~~~~F 111 (478)
+.+.++++..+.++|.|..-+...++++|.++++ +|..+.++++.+.++|.++++.+. ....+..||++.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 3457788889999999999999999999988755 478899999999999999999887 6666778999999
Q ss_pred HHHHHHHHHHHHHH
Q 011747 112 GIPTVLMIGAIILF 125 (478)
Q Consensus 112 ~i~~v~m~~~liif 125 (478)
.+.++..++.++..
T Consensus 200 ~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 200 GLQLIPAGLLFLGL 213 (481)
T ss_pred HHHHHHHHHHHHHH
Confidence 99776666555443
No 20
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.95 E-value=2.8e-07 Score=95.15 Aligned_cols=78 Identities=19% Similarity=0.138 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHH
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT 115 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~ 115 (478)
...++++-.+.++|.|.+-++..+...|.++++ +|.++.+++..+.++|..+++.+.+++.+..||+..|.+++
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 185 (399)
T PRK05122 112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM 185 (399)
T ss_pred HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 445666667888999999999988888888654 37778889899999999999888888877889999888766
Q ss_pred HHHH
Q 011747 116 VLMI 119 (478)
Q Consensus 116 v~m~ 119 (478)
+..+
T Consensus 186 ~~~~ 189 (399)
T PRK05122 186 LLAL 189 (399)
T ss_pred HHHH
Confidence 5443
No 21
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.95 E-value=6.2e-08 Score=96.69 Aligned_cols=264 Identities=17% Similarity=0.179 Sum_probs=173.1
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i 113 (478)
.+.+.++++..+.+++.|...+...++..|.++++ +|.+.+++.+.+.++|..+++.+.+.+.+..+|+..|.+
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35667778888899999999999999999999764 488899999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747 114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL 193 (478)
Q Consensus 114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (478)
.++..+++.+...... ++...
T Consensus 159 ~~~~~~~~~~~~~~~~-------------~~~~~---------------------------------------------- 179 (352)
T cd06174 159 LAILGLLLALLLLFLL-------------RLLLL---------------------------------------------- 179 (352)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHH----------------------------------------------
Confidence 8887777766654321 00000
Q ss_pred hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc
Q 011747 194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG 273 (478)
Q Consensus 194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~ 273 (478)
+.+....++..+....+.......+. .+.. +...+
T Consensus 180 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~ 214 (352)
T cd06174 180 -----------------------------------------LALAFFLLSFGYYGLLTYLPLYLQEV-LGLS---AAEAG 214 (352)
T ss_pred -----------------------------------------HHHHHHHHHhHHHHHHHHHHHHHHHh-cCCC---HHHHH
Confidence 00000000110000000000000000 0110 01123
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchh-hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQ-RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~-ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
++.....+..++..++..++ .+|.++ .+ -+.++.++..++++..... .+.++.
T Consensus 215 ~~~~~~~~~~~i~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~ 268 (352)
T cd06174 215 LLLSLFGLGGILGALLGGLL----SDRLGR-------RRLLLLIGLLLAALGLLLLALA---------------PSLALL 268 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHh-------hhHHHHHHHHHHHHHHHHHHHh---------------ccHHHH
Confidence 34455555555555555543 344432 12 4667777777776655432 125667
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHH
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY 432 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~ 432 (478)
+..+++.++++....+...+.+.+..|++.|+..+|++.....+|..+++.+.+...+.. + ...
T Consensus 269 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~------~----------~~~ 332 (352)
T cd06174 269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG------G----------YGG 332 (352)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C----------cch
Confidence 788999999999999999999999999999999999999999999999998887664310 1 234
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011747 433 FYFLIAGLGGLNIVYFL 449 (478)
Q Consensus 433 ~f~~la~l~~v~~vif~ 449 (478)
.|...+++.++..++++
T Consensus 333 ~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 333 VFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 56666666666665543
No 22
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.93 E-value=1.1e-08 Score=112.36 Aligned_cols=252 Identities=9% Similarity=-0.097 Sum_probs=183.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc-chh----
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVI---- 109 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g-~~~---- 109 (478)
+.+...++++.++++.+|.+++.+++.++|.+..+ ++++++.+++|||..+.+.+.+. ++..+..... +..
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiGSl-is~~i~~~l~~~~~~fg~ 156 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAGSL-ISTIITPILRGDVGCFGC 156 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccccc
Confidence 45666778899999999999999999999998765 35677899999999999998765 4444444333 332
Q ss_pred ---HhHHHHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCc
Q 011747 110 ---GFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPL 186 (478)
Q Consensus 110 ---~F~i~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (478)
-++..++.+++.++.++.+...++..++.+.+-..+.+++.......+.
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~---------------------------- 208 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK---------------------------- 208 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH----------------------------
Confidence 2337788888888888888776666555444333344443332221100
Q ss_pred cchhhhhhhhhhhcccCCCCCCCCCCcccccc--cchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCC
Q 011747 187 THQFRFLNKAAMIVDNNELKPDGTPVNQWRLC--SIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHL 264 (478)
Q Consensus 187 ~~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~--~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~ 264 (478)
+. .. ........|-.+ ...++++++...+++.++...+.+|+.+.|....++.|..++++..
T Consensus 209 --------~~------~~--~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~ 272 (654)
T TIGR00926 209 --------RF------ST--RSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMD 272 (654)
T ss_pred --------hh------cc--CCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhc
Confidence 00 00 000000122222 2233567899999999999999999999999999999999999987
Q ss_pred CCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 011747 265 GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRAS 338 (478)
Q Consensus 265 ~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~ 338 (478)
+ .+...+...+.++++-.++++|+...+.+|+.+++.+ .-.+++++.-+.+...++++..++++..+...
T Consensus 273 ~-~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~---~~~~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 273 G-DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAK---CGTRFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred C-ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHh---cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 5556667788999999999999999999999998843 44678899999999999999999998876543
No 23
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.92 E-value=7.2e-08 Score=113.26 Aligned_cols=281 Identities=9% Similarity=-0.025 Sum_probs=160.0
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i 113 (478)
.+.+.++++.++.++|.+++.|...+++.|.++++ ++..+.+++.++.++|.++++.+++++....||+..|.+
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 35778888999999999999999999999999865 488899999999999999999999999888999999844
Q ss_pred HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747 114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL 193 (478)
Q Consensus 114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (478)
.++..++++++.+. ....++...... .. . +..
T Consensus 180 ~~~~~~~~~~~~~~----~~~~~~~~~~~~-----------------~~----~-----------------------~~~ 211 (1140)
T PRK06814 180 LMGIAVLGWLASLF----IPKTGNAAPDLK-----------------ID----R-----------------------NII 211 (1140)
T ss_pred HHHHHHHHHHHHhh----CCCCCCCCCCCe-----------------ec----c-----------------------chH
Confidence 44433333332221 111111100000 00 0 000
Q ss_pred hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCC-
Q 011747 194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP- 272 (478)
Q Consensus 194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~- 272 (478)
.... +.....++-..+..+.+....++.++....+.+..+. ....+ .++
T Consensus 212 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~g----~~~~ 261 (1140)
T PRK06814 212 RSTI-----------------------TLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA---KETLG----GDEN 261 (1140)
T ss_pred HHHH-----------------------HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHcC----CchH
Confidence 0000 0000011101122222222333333322222222222 11122 222
Q ss_pred --cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhh-hhhhcc---CC-CC
Q 011747 273 --GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGR-RASAHL---HP-MS 345 (478)
Q Consensus 273 --~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~-~~~~~~---~g-~~ 345 (478)
+++.+...+..++...+..++. +++ ...+.+.+|.++.+++.+..++..... ...... .+ ..
T Consensus 262 ~~g~~~~~~~~g~~ig~~~~g~l~----~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 330 (1140)
T PRK06814 262 VATLFLAVFSVGVAVGSFLASKLS----EGR-------ITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLS 330 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CCc-------eeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhc
Confidence 3344445555555554444321 221 112335555555555444333220000 000000 00 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 346 QVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 346 ~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
..+.|+++..+++.|++..+..+...+++.+.+|++.+|.++|++.+...+|..+++.+.+.+.
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 1355677788899999999999999999999999999999999999999999999888877664
No 24
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.91 E-value=1.7e-07 Score=96.51 Aligned_cols=262 Identities=10% Similarity=0.050 Sum_probs=147.1
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i 113 (478)
.+.+.+++...+.+++.+...|...+...|. .+ ++.+.+++..+..++|..+++.+.+++.+++||+..|.+
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~-------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QK-------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hh-------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 3466666667777888888888777776654 21 256677778888899999999999999888999999988
Q ss_pred HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747 114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL 193 (478)
Q Consensus 114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (478)
.++..++..+.... ++ +.+|++++ .+ .. + + . . .++
T Consensus 164 ~~~~~~~~~~~~~~-~~---~~~~~~~~-------------------~~---~~-----~----~------~-~--~~~- 198 (382)
T PRK11128 164 LTAGVASMLLGQLL-RP---TIMPQGES-------------------RQ---QE-----S----A------G-W--PAW- 198 (382)
T ss_pred HHHHHHHHHHHHHc-cC---CCCCcccc-------------------cc---cc-----c----c------c-c--chH-
Confidence 77655554433221 11 11111100 00 00 0 0 0 0 000
Q ss_pred hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc
Q 011747 194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG 273 (478)
Q Consensus 194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~ 273 (478)
.+.-..|+ +..+.+...+++..+.+..+.+..+.. |.+.. +-..+
T Consensus 199 ---------------------------~~i~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~g~s---~~~~g 243 (382)
T PRK11128 199 ---------------------------KALLKEPT---VWRFLLCVSLLQGSHAAYYGFSAIYWQ--AAGYS---ASTIG 243 (382)
T ss_pred ---------------------------HHHHcChh---HHHHHHHHHHHHHHhHhHHHHHHHHHH--HCCCC---HhHHH
Confidence 00001112 222223233333443333333222222 21111 01113
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
.+..++.+..++...+.+++ .+|+ +..+.+.+++++.+++++..+.. -+.++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~ 297 (382)
T PRK11128 244 YLWSLGVVAEVLIFAFSNRL----FRRW-------SARDLLLLSAICGVVRWGLMGST---------------TALPWLI 297 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHC-------CHHHHHHHHHHHHHHHHHHHHhh---------------hhHHHHH
Confidence 34444544444444444433 3443 33344667777777766544322 2455667
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH-HHhhHHHHHHHHHHHHhhc
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF-CSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~-l~~a~g~~l~~~l~~~~~~ 410 (478)
..-++.++++.+..+....++.++.|.+ ++..+|+.. +..++|..+|+.+++...+
T Consensus 298 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 298 VIQILHCGTFTVCHLAAMRYIAARPGSE-VIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999998885555 588899876 5567777777777766553
No 25
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.90 E-value=3.2e-08 Score=99.35 Aligned_cols=85 Identities=24% Similarity=0.326 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.++|.|...+...++..|.++++ +|.+.+++.+.+.++|..+++.+.+++.++.||+..|.+.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 3447888889999999999999999999999875 4899999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHH
Q 011747 115 TVLMIGAIILF 125 (478)
Q Consensus 115 ~v~m~~~liif 125 (478)
++..+++.++.
T Consensus 158 ~~~~~~~~il~ 168 (352)
T PF07690_consen 158 AILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHH
T ss_pred cchhhhhhhhH
Confidence 99888887753
No 26
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.90 E-value=2.9e-07 Score=98.98 Aligned_cols=268 Identities=15% Similarity=0.086 Sum_probs=163.8
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i 113 (478)
.+.+.+++...++++|++++.|.-++++.+..+++ +..++.++.-...|+.-++||.+.|.+-...|....|.+
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 46777888889999999999999999999999865 488899999999999999999999888777899999999
Q ss_pred HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747 114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL 193 (478)
Q Consensus 114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (478)
.+++.++++..+..-++.. +++..+-.+..+ +.+ +.++++
T Consensus 175 nalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~----~l~---------------------------------~G~ryv 214 (524)
T PF05977_consen 175 NALSFLISILALLRWKPPP---PPSSLPRERFFS----ALR---------------------------------EGLRYV 214 (524)
T ss_pred HHHHHHHHHHHHHHccccc---cccccchhhhhh----hHH---------------------------------HHHHHH
Confidence 9998888766554332211 111111000000 000 000000
Q ss_pred hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc
Q 011747 194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG 273 (478)
Q Consensus 194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~ 273 (478)
.+.|.+..++.. ..+|.....-....+-..+ +...+ ..+.
T Consensus 215 ------------------------------~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a---~~~l~----~~a~ 254 (524)
T PF05977_consen 215 ------------------------------RSSPPLRSVLLR---SFLFNLFASAVWALLPLFA---RDVLG----GGAS 254 (524)
T ss_pred ------------------------------hcchHHHHHHHH---HHHHHHhhhHHHHhhhHHH---HHHhC----CcHH
Confidence 001111111111 1112211100011111122 11221 2333
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
.+..+... .-.+-+...++.+.++|. .+..+-+..+.++.+++++..++. -+.|..+
T Consensus 255 ~yGll~a~--~gvGai~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~---------------~~~~~~~ 311 (524)
T PF05977_consen 255 GYGLLLAA--FGVGAILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALS---------------PSFWLAL 311 (524)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcc---------------hHHHHHH
Confidence 44433332 223344555555555443 233444566777766666554432 3455567
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~ 410 (478)
+..++.|++-..........+-+.+|++++|..++++.+....+..+|..+.+.+.+
T Consensus 312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 312 IALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999988999999999999999999998877777777777766543
No 27
>PRK10504 putative transporter; Provisional
Probab=98.89 E-value=4.1e-07 Score=96.26 Aligned_cols=86 Identities=16% Similarity=0.065 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.++|.|.+-|...+.+.|.++++ ++.+++.++....|+|..+++.+.+++.+..||++.|.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 4566777888999999999898888888887543 4778899999999999999999999988889999999987
Q ss_pred HHHHHHHHHHHH
Q 011747 115 TVLMIGAIILFL 126 (478)
Q Consensus 115 ~v~m~~~liifl 126 (478)
.....++.+...
T Consensus 171 ~~~~~l~~~~~~ 182 (471)
T PRK10504 171 IPVGIIGAIATL 182 (471)
T ss_pred HHHHHHHHHHHH
Confidence 766655555544
No 28
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.89 E-value=6.1e-08 Score=102.61 Aligned_cols=62 Identities=15% Similarity=-0.084 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+.++++...++.+++.....+...+.+.+..|++.++..+|++.....+|+.+++.+.+.+.
T Consensus 332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~ 393 (455)
T TIGR00892 332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV 393 (455)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence 45566667788999998999999999999999999999999999999999999998887554
No 29
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.84 E-value=3.2e-07 Score=93.26 Aligned_cols=262 Identities=10% Similarity=0.066 Sum_probs=145.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc--------
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-------- 106 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g-------- 106 (478)
+.+.++....+.+++.+...+...+++.|.++++ +|..+.++...+.++|.++++.+.+++....|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 4444444445566777778888899999988653 48889999999999999999988777766667
Q ss_pred chhHhHHHHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCc
Q 011747 107 WVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPL 186 (478)
Q Consensus 107 ~~~~F~i~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (478)
|+..|.+.++..+++.++.+...|. +.+..+..+ . .
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e----~~~~~~~~~-----------------~----~------------------- 191 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKE----PQEDASVPK-----------------P----L------------------- 191 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccC----CCcccccch-----------------h----H-------------------
Confidence 9999999888777766543322211 100000000 0 0
Q ss_pred cchhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCC
Q 011747 187 THQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGP 266 (478)
Q Consensus 187 ~~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~ 266 (478)
.-+. . ..+ .+.-..+....+..+.+...++...+.+..+.+..+..+ .+
T Consensus 192 -----~~~~-~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g- 240 (356)
T TIGR00901 192 -----TQAV-L---------------KPI-----REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD----MG- 240 (356)
T ss_pred -----HHHH-H---------------HHH-----HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC-
Confidence 0000 0 000 000001111123333333444555555544443333322 22
Q ss_pred CcccCCcccchhH---HH-HHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 011747 267 KFQIPPGTVGVIS---MI-TIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLH 342 (478)
Q Consensus 267 g~~ip~~~~~~~n---~~-~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~ 342 (478)
.+++.+..+. .. ..++..++..+ +.+|. ++.+.+.+++++.+++.......... ...+
T Consensus 241 ---~~~~~~g~~~~~~~~~~~~~g~~~~g~----l~~r~-------g~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~ 302 (356)
T TIGR00901 241 ---FSKEEIALVAKINGLLGAILGGLIGGI----IMQPL-------NILYALLLFGIVQALTNAGFVWLASN----GHHD 302 (356)
T ss_pred ---CCHHHHHHHhHHHHHHHHHHHHHHHHH----HHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHhc----Cccc
Confidence 3444432222 21 12222222222 22343 22344667777766665544333110 0000
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhh
Q 011747 343 PMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFG 395 (478)
Q Consensus 343 g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a 395 (478)
+....+.++++...++.++++.+..+....+..+.+|++.+|..+|++....+
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 00113445677778899999999999999999999999999999998876543
No 30
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.82 E-value=8.2e-07 Score=93.93 Aligned_cols=84 Identities=12% Similarity=0.193 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec-cchhHhHHH
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGIP 114 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~-g~~~~F~i~ 114 (478)
...+++.-++.++|.|..-|.......+.++++ +|.++..+++.+.++|..+++.+++++.+.. ||+..|.+.
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~ 204 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF 204 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence 445666677889999999999999999888754 4889999999999999999999999888774 999999998
Q ss_pred HHHHHHHHHHH
Q 011747 115 TVLMIGAIILF 125 (478)
Q Consensus 115 ~v~m~~~liif 125 (478)
++..++..+++
T Consensus 205 ~~~~~~~~~~~ 215 (465)
T TIGR00894 205 GIVGCAWSLLW 215 (465)
T ss_pred hHHHHHHHHHH
Confidence 77655554443
No 31
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.81 E-value=6.6e-07 Score=94.66 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeE--------Eeec
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI--------QDSV 105 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i--------~~~~ 105 (478)
.....++++-++.++|.|+.-|...++++|.++++ +|..+..++-.+..+|.++++.+..++ .+.+
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 191 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD 191 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence 34556677778899999999999999999999864 477788888888899988876543322 2457
Q ss_pred cchhHhHHHHHHHHHHHHHH
Q 011747 106 SWVIGFGIPTVLMIGAIILF 125 (478)
Q Consensus 106 g~~~~F~i~~v~m~~~liif 125 (478)
||++.|.+.++..++.++..
T Consensus 192 gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 192 GWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 99999998877666655443
No 32
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.79 E-value=5.4e-07 Score=95.33 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+...+.++..+.++|.|...|...+++.|.++++ +|.+++.+++.+.++|..+++.+.+++.+++||++.|.+.
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 5666778888889999999999999999999754 4888999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHH
Q 011747 115 TVLMIGAIILF 125 (478)
Q Consensus 115 ~v~m~~~liif 125 (478)
++..++..+..
T Consensus 163 ~~~~~~~~~~~ 173 (485)
T TIGR00711 163 VPIGIIVVVVA 173 (485)
T ss_pred hHHHHHHHHHH
Confidence 66555555443
No 33
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.78 E-value=8.5e-07 Score=90.47 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.++|.|..-+...++..|.++++ +|.+.+.+++...++|..+++.+.+++.+..||+..|.+.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4566777778889999999999999999988744 4888999999999999999999888888888999999988
Q ss_pred HHHHHHHHHHHHh
Q 011747 115 TVLMIGAIILFLV 127 (478)
Q Consensus 115 ~v~m~~~liifl~ 127 (478)
++..++..+..+.
T Consensus 166 ~~~~~~~~~~~~~ 178 (385)
T TIGR00710 166 SLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666655443
No 34
>PRK12382 putative transporter; Provisional
Probab=98.77 E-value=1.5e-06 Score=89.64 Aligned_cols=77 Identities=12% Similarity=0.217 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+...++++-.+.++|.+..-|...+.+.|.++++ +|.++++++..+.++|..+++.+.+++.+.+||+..+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 4566777777888888888888888888887643 4788999999999999999998888887788998876655
Q ss_pred HHH
Q 011747 115 TVL 117 (478)
Q Consensus 115 ~v~ 117 (478)
.+.
T Consensus 185 ~~~ 187 (392)
T PRK12382 185 MVL 187 (392)
T ss_pred HHH
Confidence 443
No 35
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.74 E-value=4.6e-06 Score=89.30 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe-eccchhHhH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-SVSWVIGFG 112 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~-~~g~~~~F~ 112 (478)
.+.+.+++...+.+++.+...+...++..|.++++ +|.++..+.-.+.++|.++++.+..++.+ ..||+..|.
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~ 178 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW 178 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 45666776777888888889999999999998754 47778888889999999999888887777 469999999
Q ss_pred HHHHHHHHHHHH
Q 011747 113 IPTVLMIGAIIL 124 (478)
Q Consensus 113 i~~v~m~~~lii 124 (478)
+.++.+++..+.
T Consensus 179 i~a~l~ll~~l~ 190 (491)
T PRK11010 179 LMAALLIPCIIA 190 (491)
T ss_pred HHHHHHHHHHHH
Confidence 988776666444
No 36
>TIGR00895 2A0115 benzoate transport.
Probab=98.70 E-value=2e-06 Score=87.78 Aligned_cols=84 Identities=11% Similarity=0.129 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.++|.|..-+...+...|.++++ +|.++++++..+.++|..+++.+.+++.++.||+..|.+.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 4566777888999999999999999999988653 4788999999999999999999988888889999999988
Q ss_pred HHHHHHHHHH
Q 011747 115 TVLMIGAIIL 124 (478)
Q Consensus 115 ~v~m~~~lii 124 (478)
++..++..++
T Consensus 178 ~~~~~~~~~~ 187 (398)
T TIGR00895 178 GIAPLLLLLL 187 (398)
T ss_pred hhHHHHHHHH
Confidence 6544444443
No 37
>TIGR00898 2A0119 cation transport protein.
Probab=98.69 E-value=3.2e-06 Score=90.23 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.+++...+.++|.|+.-+...+++.|.++++ +|..+..++..+.++|.++++.+...+.+ |+..|.+.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 4556677778889999999999999999998764 36777788888889999998877655543 99999988
Q ss_pred HHHHHHHHHHH
Q 011747 115 TVLMIGAIILF 125 (478)
Q Consensus 115 ~v~m~~~liif 125 (478)
++..++..+..
T Consensus 250 ~i~~~~~~~~~ 260 (505)
T TIGR00898 250 SLPTFLFFLLS 260 (505)
T ss_pred HHHHHHHHHHH
Confidence 77666655544
No 38
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.68 E-value=2e-06 Score=92.10 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i 113 (478)
.+.+.+.++-.+.++|.|++.|...+.+.+.+.+++ +|.++++++..+.++|..++|.+.+++.++.||++.|.+
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 356777888889999999998888888888775432 588899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 011747 114 PTVLMIGAIILF 125 (478)
Q Consensus 114 ~~v~m~~~liif 125 (478)
.....++.+++.
T Consensus 167 ~~~~~~~~~~l~ 178 (495)
T PRK14995 167 NVPIVLVVMGLT 178 (495)
T ss_pred HHHHHHHHHHHH
Confidence 766555554443
No 39
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.68 E-value=2.2e-06 Score=89.99 Aligned_cols=82 Identities=16% Similarity=0.096 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.+++...+.+++.|..-+...+.+.+.++++ +|..+..+++.+.++|+.+++.+.+++.+.+||++.|.+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3455555556677888887788889999998754 4888999999999999999998888888889999999987
Q ss_pred HHHHHHHH
Q 011747 115 TVLMIGAI 122 (478)
Q Consensus 115 ~v~m~~~l 122 (478)
++..++..
T Consensus 184 ~i~~~~~~ 191 (434)
T PRK11663 184 GIIAIVVG 191 (434)
T ss_pred HHHHHHHH
Confidence 76554443
No 40
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.67 E-value=4.2e-06 Score=85.13 Aligned_cols=85 Identities=11% Similarity=0.057 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCc
Q 011747 349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAG 428 (478)
Q Consensus 349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~ 428 (478)
.++.+...++.+++.-...+....++.+..|++. +..+|++.....+|..+++.+.+.+.+.. +
T Consensus 288 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~g~~~~~~------g--------- 351 (375)
T TIGR00899 288 LWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRA-GAATTLYTNTGRVGWIIAGSVGGILAERW------S--------- 351 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhc------c---------
Confidence 3444555677788887888888888888898865 69999999888899999888887654321 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 011747 429 RLDYFYFLIAGLGGLNIVYFLY 450 (478)
Q Consensus 429 ~~~~~f~~la~l~~v~~vif~~ 450 (478)
....|+..+++.++..++...
T Consensus 352 -~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 352 -YHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred -chhHHHHHHHHHHHHHHHHhe
Confidence 234566666666666655443
No 41
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.65 E-value=4.5e-06 Score=85.23 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.+++...+.+++.|...+...++..|.++++ +|.+++++.+.+.++|..+++.+.+++.+..||+..|.+.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 3456667777888899988899999999988654 4888999999999999999999888888888999999987
Q ss_pred HHHHHHHHHHH
Q 011747 115 TVLMIGAIILF 125 (478)
Q Consensus 115 ~v~m~~~liif 125 (478)
++..++..+..
T Consensus 152 ~~~~~~~~~~~ 162 (377)
T PRK11102 152 ALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHH
Confidence 77666655444
No 42
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.65 E-value=5e-06 Score=86.85 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+...++++-++.++|.|..-+...+...|.|+++ ++.+..+++..+.++|..+++.+.+++.+..||++.|.+.
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5666777778888888766555557777888754 4778899999999999999998888888778999999988
Q ss_pred HHHHHHHHHH
Q 011747 115 TVLMIGAIIL 124 (478)
Q Consensus 115 ~v~m~~~lii 124 (478)
++..+++.+.
T Consensus 177 ~~~~~i~~~~ 186 (413)
T PRK15403 177 AVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHH
Confidence 7766666554
No 43
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.63 E-value=3.1e-06 Score=88.16 Aligned_cols=78 Identities=12% Similarity=0.247 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++-.+.++|.|+.-+...++..|.++++ +|.++.+++..+.++|.++++.+.+++.+.+||+..|.++
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 5667777888899999999999999999988754 4788899999999999999998888888889999999986
Q ss_pred HHHH
Q 011747 115 TVLM 118 (478)
Q Consensus 115 ~v~m 118 (478)
++..
T Consensus 179 ~~~~ 182 (426)
T PRK12307 179 LLPV 182 (426)
T ss_pred HHHH
Confidence 5443
No 44
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.63 E-value=5.1e-06 Score=86.24 Aligned_cols=83 Identities=13% Similarity=0.315 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i 113 (478)
.+.+.+++.-.+.+++.|..-|...++..|.++++ +|..+..+++.+.|+|..+++.+.+++.+..||+..|.+
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 45677777788889999999999999999988654 588899999999999999999999999888999999998
Q ss_pred HHHHHHHHH
Q 011747 114 PTVLMIGAI 122 (478)
Q Consensus 114 ~~v~m~~~l 122 (478)
.++..++.+
T Consensus 180 ~~~l~~~~~ 188 (394)
T PRK10213 180 AAVMGVLCI 188 (394)
T ss_pred HHHHHHHHH
Confidence 776554443
No 45
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.62 E-value=4.4e-06 Score=87.23 Aligned_cols=109 Identities=12% Similarity=0.181 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHH
Q 011747 277 VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQL 356 (478)
Q Consensus 277 ~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y 356 (478)
.+..+..++..|+..++ .+|.++ .+-+.+|+++.+++++...+.. -+.++.+...
T Consensus 264 ~~~~i~~ii~~~~~~~l----~~r~g~-------~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 318 (437)
T TIGR00792 264 SIAIVAGLIGVLLFPRL----VKKFGR-------KILFAGGILLMVLGYLIFFFAG--------------SNLPLILVLI 318 (437)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHcc--------------hhHHHHHHHH
Confidence 34444445555544443 344432 2335667666666665443321 1234455667
Q ss_pred HHHHHHHHHHhhhHHHHHHhhcC-------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747 357 ILMGFCEAFNIIGQIEFFNKQFP-------DHMKSIANSLLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 357 ~l~~lgEl~~~~~gle~~~~~aP-------~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~ 410 (478)
++.+++.....+...++..+.+| ++.+|..+|++.+...+|..+++.+.+.+-+
T Consensus 319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 319 ILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889988888888888887765 5678999999999999999888888776543
No 46
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.62 E-value=7.4e-06 Score=84.88 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec-cchhHhHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGI 113 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~-g~~~~F~i 113 (478)
+...++++-++.++|.|..-+...+.+.+.|+ + +|..+..++..+.++|..+++.+.+++.++. +|+..|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45567788889999999999999999888875 2 3678888888899999999988888877664 89888766
Q ss_pred HHHHHHHHH
Q 011747 114 PTVLMIGAI 122 (478)
Q Consensus 114 ~~v~m~~~l 122 (478)
-++..++.+
T Consensus 169 ~~~~~~~~~ 177 (393)
T PRK09705 169 WALPAVVAL 177 (393)
T ss_pred HHHHHHHHH
Confidence 444433333
No 47
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.61 E-value=2.2e-06 Score=86.55 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.++|.|..-+...+...+.+++ +|..+..++..+.++|+++++.+.+.+.+..||+..|.+.
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 556677777788888887767777776666642 3778899999999999887654555555568999999988
Q ss_pred HHHHHHHHHHH
Q 011747 115 TVLMIGAIILF 125 (478)
Q Consensus 115 ~v~m~~~liif 125 (478)
++..++..+..
T Consensus 163 ~~~~~~~~~~~ 173 (377)
T TIGR00890 163 GIIFLLVIVLG 173 (377)
T ss_pred HHHHHHHHHHH
Confidence 77666655544
No 48
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.60 E-value=6.6e-06 Score=84.79 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+...++++..+.++|.|..-+...+...|.++++ +|.+++++.+...++|..+++.+.+++.+..||+..|.+.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 3445566667778888887888888888888754 4888999999999999999998887777778999999988
Q ss_pred HHHHHHHHHHH
Q 011747 115 TVLMIGAIILF 125 (478)
Q Consensus 115 ~v~m~~~liif 125 (478)
++..++..+..
T Consensus 164 ~~~~~i~~~~~ 174 (392)
T PRK10473 164 AAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHH
Confidence 77666555543
No 49
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.59 E-value=1.1e-05 Score=83.00 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHh
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGF 111 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F 111 (478)
+.+.++++.++.++|.|.+.|...+...+.++++ +|.+.+++++.+.|+|..+++.+.+++.+...+...+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 5667777888889999888887777777776543 4788999999999999999999988887654343333
No 50
>PRK09848 glucuronide transporter; Provisional
Probab=98.59 E-value=3.8e-06 Score=88.50 Aligned_cols=85 Identities=8% Similarity=0.027 Sum_probs=64.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChh-------hH
Q 011747 311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH-------MK 383 (478)
Q Consensus 311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~-------~k 383 (478)
-+-+.+|+++.+++++...+.. ..+.++.+...++.++|+.+..+...+...+.+|++ .+
T Consensus 294 ~~~~~~g~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~ 360 (448)
T PRK09848 294 KNTFLIGALLGTCGYLLFFWVS-------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIE 360 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccch
Confidence 3456778877777765543211 134566666778899999999999999999888764 56
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 384 SIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 384 s~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
|.++|++.+..-+|..+++.+.+.+
T Consensus 361 G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 361 GLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988777654
No 51
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.58 E-value=8.4e-06 Score=86.10 Aligned_cols=84 Identities=14% Similarity=0.037 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHH-HHhhceeeeEEeeccchhHhHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVI-LITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa-~~~~~~~~~i~~~~g~~~~F~i 113 (478)
+...+++...+.+++.|..-|.......+.++++ +|..+.++++.+.++|. +++++....+....||+.+|.+
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 3555666677888888888888888888887653 47889999999999986 4555432222223599999998
Q ss_pred HHHHHHHHHHH
Q 011747 114 PTVLMIGAIIL 124 (478)
Q Consensus 114 ~~v~m~~~lii 124 (478)
.++..++..++
T Consensus 193 ~~~~~~~~~~l 203 (452)
T PRK11273 193 PAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHH
Confidence 77665554433
No 52
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.56 E-value=7.5e-06 Score=96.15 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEee
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS 104 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~ 104 (478)
+.+.++++.++.+++.|.+-|...+++.|.++++ +|..+++++..+.++|.++++.+.+++.+.
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666777888889999999999999999999764 488899999999999999999888877653
No 53
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.56 E-value=5.1e-06 Score=88.36 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.+++.|+..+...++..|.++++ +|..++++++.+.++|.++++.+.+++.+.+||++.|.+.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 5666777888889999999999999999998754 4788899999999999999999888888889999999875
Q ss_pred HHHHH
Q 011747 115 TVLMI 119 (478)
Q Consensus 115 ~v~m~ 119 (478)
++..+
T Consensus 181 ~~~~~ 185 (496)
T PRK03893 181 ILPII 185 (496)
T ss_pred HHHHH
Confidence 54433
No 54
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.55 E-value=4.2e-06 Score=87.30 Aligned_cols=134 Identities=11% Similarity=0.158 Sum_probs=84.1
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
.+.+++.+..++..++..++ .+|.++ .+.+.++.++.+++++..++. .++++++
T Consensus 266 ~~~~~~~~~~~~~~~~~g~l----~dr~g~-------~~~~~~~~~l~~~~~~l~~~~---------------~~~~~~~ 319 (420)
T PRK09528 266 YLNSFQVFLEALIMFFAPFI----INRIGA-------KNALLLAGTIMAVRIIGSGFA---------------TGPLEVS 319 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhCc-------chhhHHHHHHHHHHHHHHHhc---------------ccHHHHH
Confidence 34444555444555544443 345432 223566666666665544322 2456777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH-HHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHH
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL-LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY 432 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl-~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~ 432 (478)
...++.+++.....+...+++.+..|++.++...+. +.+...+|..+++.+.+.+.+.. + ...
T Consensus 320 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G----------~~~ 383 (420)
T PRK09528 320 ILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------G----------FQG 383 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------C----------chH
Confidence 778899998888888888999999999999887655 66677788888877776554321 1 234
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011747 433 FYFLIAGLGGLNIVYFL 449 (478)
Q Consensus 433 ~f~~la~l~~v~~vif~ 449 (478)
.|...+++.++..++.+
T Consensus 384 ~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 384 TYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666655554444
No 55
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.54 E-value=3.7e-05 Score=79.76 Aligned_cols=84 Identities=11% Similarity=0.113 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEee-ccchhHhHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGI 113 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~-~g~~~~F~i 113 (478)
+.+.+++...+.++..+...|...++..|..+++ +|.++..+..++.++|.++++.+..++.+. .||+..|.+
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 4555555555667788888999999999987654 478888888899999999998777766664 599999999
Q ss_pred HHHHHHHHHHH
Q 011747 114 PTVLMIGAIIL 124 (478)
Q Consensus 114 ~~v~m~~~lii 124 (478)
.++..++..+.
T Consensus 167 ~a~~~l~~~l~ 177 (402)
T PRK11902 167 MAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHH
Confidence 87766655543
No 56
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.54 E-value=1.3e-05 Score=82.84 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=47.3
Q ss_pred CCcccccchhccCCCCCCcccccchh-hhH-HHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHHHHHHHHH
Q 011747 52 GIRPCSIPFGVDQFDATTDEGVKGIN-SFF-NWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 125 (478)
Q Consensus 52 ~~kpni~~~~~dq~~~~~~~~~~~~~-~~F-~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m~~~liif 125 (478)
..-|...+...|..+++ .|+ ..+ ++...+.++|..+++.+.+++.+++||+..|.+.++..++..+..
T Consensus 121 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 190 (393)
T PRK15011 121 TANPQMFALAREHADKT------GREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMV 190 (393)
T ss_pred hhHHHHHHHHHHHhhhc------cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 34455555555544322 122 233 578889999999999999999888999999998876655554443
No 57
>PRK11043 putative transporter; Provisional
Probab=98.53 E-value=1.5e-05 Score=82.33 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.++|.+..-+...++..|.++++ ++.+.++......++|..+++.+.+++.+.+||+..|.+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4555666677777887777777778888888654 4677888888889999999999989888889999999987
Q ss_pred HHHHHHHHHHH
Q 011747 115 TVLMIGAIILF 125 (478)
Q Consensus 115 ~v~m~~~liif 125 (478)
++..++..+..
T Consensus 167 ~~~~~~~~~~~ 177 (401)
T PRK11043 167 FAITLLLILPT 177 (401)
T ss_pred HHHHHHHHHHH
Confidence 77666655443
No 58
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.51 E-value=1.8e-05 Score=84.02 Aligned_cols=299 Identities=12% Similarity=0.020 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeE--Ee-------e---
Q 011747 37 GVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI--QD-------S--- 104 (478)
Q Consensus 37 ~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i--~~-------~--- 104 (478)
..+.+++.+.-++.....+...++++|..++++. +++.++.|+.+.+|+|+.+++.+.++. .+ +
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 4555666666777777888889999999987642 346899999999999999998766543 11 1
Q ss_pred ---ccchhHhHHHHHHHHHHHHHHHhcccceeeeCCCC-CchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccc
Q 011747 105 ---VSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEG-SIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFV 180 (478)
Q Consensus 105 ---~g~~~~F~i~~v~m~~~liifl~g~~~~~~~~p~g-~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (478)
.+++..|.++++.++++.++-...-|.+ +|.. +.. ++ . .++.....
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~---~~~~~~~~------------------~~----~---~~~~~~~~-- 240 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKEN---PLIGSDDF------------------IN----S---EAAPPSKH-- 240 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeecc---CCCccccc------------------hh----h---hccccccc--
Confidence 2678999999998888888765543322 1110 000 00 0 00000000
Q ss_pred cccCCccchhhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHh-h
Q 011747 181 LSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-K 259 (478)
Q Consensus 181 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~-~ 259 (478)
.. ...+ +. .| +.-.+--|.+.+++..-++.-+=|..+-+..|.++-+.. +
T Consensus 241 ------~~-~~~~---~~---------------i~----~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~ 291 (477)
T TIGR01301 241 ------GE-EAFF---GE---------------LF----GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYG 291 (477)
T ss_pred ------ch-hhhH---HH---------------HH----HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcC
Confidence 00 0000 00 00 000111233444555544454455555555555543321 1
Q ss_pred hccCCCCCcccC---CcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhh-HHHHHHHHHHHHHHHHHhhhh
Q 011747 260 MNRHLGPKFQIP---PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRI-GIGMIFSILSMIVAGLVERGR 335 (478)
Q Consensus 260 md~~~~~g~~ip---~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki-~iG~~l~~ls~~~~~~~~~~~ 335 (478)
-+..-...++-- ..+-..+|.+... ++..++.++.+|.+ ..++. .++.++.+++++...++....
T Consensus 292 ~~~~~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~~~ 360 (477)
T TIGR01301 292 GSVNQGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTYVA 360 (477)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000000000000 0111222333322 33333333344432 12334 688889999988877665310
Q ss_pred hh--h-hccCC--CCcch-HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCh--hhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 011747 336 RA--S-AHLHP--MSQVS-VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD--HMKSIANSLLFCSFGFASYLSSLLITI 407 (478)
Q Consensus 336 ~~--~-~~~~g--~~~~s-~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~--~~ks~~~gl~~l~~a~g~~l~~~l~~~ 407 (478)
.+ . ...+. ..+.. .++.+..+.+.|++-......=++.+.+..|+ +-.|.+||+...+..+...+..+..+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 361 KNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred hccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00000 11122 36677788999999999999999999999995 455999999999999999988876665
Q ss_pred hh
Q 011747 408 VH 409 (478)
Q Consensus 408 ~~ 409 (478)
+.
T Consensus 441 ~~ 442 (477)
T TIGR01301 441 WD 442 (477)
T ss_pred HH
Confidence 43
No 59
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.51 E-value=2.4e-05 Score=80.67 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.++|.|...+....+..|.++++ ++.++.+++..+.++|.++++.+.+++.+..||+..|.+.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 4556667777778888877777777777877643 4677888888899999999998888888778999999987
Q ss_pred HHHHHHHHH
Q 011747 115 TVLMIGAII 123 (478)
Q Consensus 115 ~v~m~~~li 123 (478)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (394)
T PRK11652 169 LLLGAGVTF 177 (394)
T ss_pred HHHHHHHHH
Confidence 665554443
No 60
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.49 E-value=9.9e-06 Score=82.34 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE--------eeccchh
Q 011747 38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWVI 109 (478)
Q Consensus 38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~--------~~~g~~~ 109 (478)
.++++..+.++|.|..-+...+++.|.++++ +|.....+...+.++|.++++.+...+. +.+||++
T Consensus 98 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~ 171 (394)
T TIGR00883 98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRI 171 (394)
T ss_pred HHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHH
Confidence 4566677888899999999999999988754 4778889999999999998876544332 3579999
Q ss_pred HhHHHHHHHHHHHHH
Q 011747 110 GFGIPTVLMIGAIIL 124 (478)
Q Consensus 110 ~F~i~~v~m~~~lii 124 (478)
.|.+.++..+++..+
T Consensus 172 ~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 172 PFLVSAVLVLIGLYL 186 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999877666555443
No 61
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.46 E-value=2.6e-05 Score=80.34 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.+++.|..-+...+...|.++++ +|.+.++++..+.++|..+++.+.+++.+..||++.|.+.
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 5667777788888888887777777777776543 4677888889999999999988888888888999999998
Q ss_pred HHHHHHHHHH
Q 011747 115 TVLMIGAIIL 124 (478)
Q Consensus 115 ~v~m~~~lii 124 (478)
++..++..+.
T Consensus 164 ~~~~~~~~~~ 173 (382)
T PRK10091 164 AVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHH
Confidence 7765555443
No 62
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.46 E-value=6.7e-06 Score=83.12 Aligned_cols=86 Identities=19% Similarity=0.151 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhh-ceeeeEEeeccchhHhHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQ-TVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~-~~~~~i~~~~g~~~~F~i 113 (478)
+.+.++++..+.+++.|..-|...++..|.++++ +|.++++++..+.++|..+++ .+...+.+..+|+..|.+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 5667777888889999999999999999998764 477888999999999999998 455666667899999998
Q ss_pred HHHHHHHHHHHHH
Q 011747 114 PTVLMIGAIILFL 126 (478)
Q Consensus 114 ~~v~m~~~liifl 126 (478)
.++..++..++.+
T Consensus 156 ~~~~~~~~~~~~~ 168 (379)
T TIGR00881 156 PGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHh
Confidence 7776655544443
No 63
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.45 E-value=4.1e-06 Score=89.14 Aligned_cols=84 Identities=13% Similarity=0.050 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHH
Q 011747 38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVL 117 (478)
Q Consensus 38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~ 117 (478)
...+.+.+++++.+.......++..|+.+ +++ +......++.|.+.++|.++++.+.+++.+.+||+..|.+.++.
T Consensus 122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l 197 (468)
T TIGR00788 122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAAL 197 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 33346788899999999999999999998 322 24555778999999999999999999998889999999998887
Q ss_pred HHHHHHHH
Q 011747 118 MIGAIILF 125 (478)
Q Consensus 118 m~~~liif 125 (478)
+++..+..
T Consensus 198 ~ll~~~~~ 205 (468)
T TIGR00788 198 LLLQLFVS 205 (468)
T ss_pred HHHHHHHH
Confidence 77774443
No 64
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.44 E-value=3.7e-05 Score=79.75 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=61.8
Q ss_pred HHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHHH
Q 011747 40 VMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMI 119 (478)
Q Consensus 40 ~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m~ 119 (478)
++...+.++|.|++-|...+++.|.++++ +|.++.++.....++|..+||.+.+++.+ ..|+..|.+.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-~~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILLGTVLGGALAD-PHAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34456789999999999999999999864 58999999999999999999999888876 457777777665554
Q ss_pred HHHH
Q 011747 120 GAII 123 (478)
Q Consensus 120 ~~li 123 (478)
++.+
T Consensus 165 ~~~~ 168 (393)
T PRK11195 165 LAAL 168 (393)
T ss_pred HHHH
Confidence 4433
No 65
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.43 E-value=1.2e-05 Score=85.28 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec---cchhH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV---SWVIG 110 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~---g~~~~ 110 (478)
.+.+.+++...+.++|.|..-|...+.+.+-++++ +|..++.++-.+.++|..+++.+..++.+.. +|+..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 35666777777888998988899999999999865 4777888999999999999987765554432 58888
Q ss_pred hHHHHHHHHHHH
Q 011747 111 FGIPTVLMIGAI 122 (478)
Q Consensus 111 F~i~~v~m~~~l 122 (478)
|.+.++..++..
T Consensus 194 f~~~g~~~~~~~ 205 (467)
T PRK09556 194 FIFPSIIALIIG 205 (467)
T ss_pred HHHHHHHHHHHH
Confidence 887665544433
No 66
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.42 E-value=3.9e-05 Score=80.35 Aligned_cols=308 Identities=9% Similarity=0.014 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeee----EEee---ccchh
Q 011747 37 GVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVY----IQDS---VSWVI 109 (478)
Q Consensus 37 ~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~----i~~~---~g~~~ 109 (478)
..+++...+..++...+.-+..+++.|..++++ +|.+..++-....++|.++...+.+. .++. .+|++
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~ 178 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRW 178 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHH
Confidence 334566666788888888888999999987654 47777777777778887655444443 3332 16887
Q ss_pred HhHHHHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccch
Q 011747 110 GFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQ 189 (478)
Q Consensus 110 ~F~i~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (478)
.+.+.++..+++.++.....|. . +++..+. + +. .
T Consensus 179 ~~~v~~iv~~v~~~i~~~~~ke-~-~~~~~~~-------------~-----~~----~---------------------- 212 (428)
T PF13347_consen 179 MALVLAIVGLVFFLITFFFVKE-R-SVEVTEQ-------------E-----KK----I---------------------- 212 (428)
T ss_pred HHHHHHHHHHHHhhhhhheeee-c-ccccccc-------------c-----cc----c----------------------
Confidence 7777666666666655544332 0 0000000 0 00 0
Q ss_pred hhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhh-hccCCCCCc
Q 011747 190 FRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMK-MNRHLGPKF 268 (478)
Q Consensus 190 ~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~-md~~~~~g~ 268 (478)
++.+. ..+.++-..+..+++...+.+..+.-..+....+... +..+ .
T Consensus 213 -~~~~~---------------------------~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~--- 260 (428)
T PF13347_consen 213 -SLRDS---------------------------LRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G--- 260 (428)
T ss_pred -ccccc---------------------------hhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h---
Confidence 00000 0000111112334444444555554444444333332 2211 0
Q ss_pred ccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcch
Q 011747 269 QIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVS 348 (478)
Q Consensus 269 ~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s 348 (478)
-.+.+..+..+..++..|+..+ +.+|.++ .+-+.+|.++.+++++...+.. ..+
T Consensus 261 --~~~~~~~~~~~~~~v~~~~~~~----l~~r~gk-------~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 314 (428)
T PF13347_consen 261 --LISIFMLIFFVASIVGSPLWGR----LSKRFGK-------KKVYIIGLLLAALGFLLLFFLG-------------PGS 314 (428)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHH----HHHHccc-------eeehhhhHHHHHHHHHHHHHHH-------------hhh
Confidence 0122333333444455554443 3455543 2345677777777777665543 146
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC-------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCccc
Q 011747 349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-------DHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWL 421 (478)
Q Consensus 349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP-------~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~ 421 (478)
.++.+...++.+++-....+...+...+..+ ++..|.++|++.+..-+|..+++.+.+.+-......++.
T Consensus 315 ~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~--- 391 (428)
T PF13347_consen 315 PWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANA--- 391 (428)
T ss_pred HHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCc---
Confidence 7888888999999998888888888887776 456799999999999999988887776553322111100
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011747 422 TNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRY 457 (478)
Q Consensus 422 ~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~ 457 (478)
.+.++........+.+.+..+..++-+++.++|+-
T Consensus 392 -~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l 426 (428)
T PF13347_consen 392 -AVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPL 426 (428)
T ss_pred -CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 01122223444455555555555555566666653
No 67
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.42 E-value=7.8e-05 Score=78.08 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH-
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF- 391 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~- 391 (478)
-+.++.++.++++........ ...+.+.++...++.++++.+..+....++.+.+|++.|+.++|+..
T Consensus 283 ~l~~~~~~~~v~~~l~~~~~~-----------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~ 351 (418)
T TIGR00889 283 VMLLSLVAWALRFGFFAYGDP-----------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTL 351 (418)
T ss_pred HHHHHHHHHHHHHHHHHHcCc-----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 356666666666544433210 01123334556789999999999999999999999999999999996
Q ss_pred HHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 011747 392 CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCAR 453 (478)
Q Consensus 392 l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~ 453 (478)
...++|..+|+.+.+...+... + .+. .....-|...+++.++..++++++.+
T Consensus 352 ~~~~lg~~iGp~l~G~l~~~~g---~-----~~~--~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 352 MCNGFGSLLGYILSGVMVEKMF---A-----YGT--FDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHhhHHHHHHHHHHHHHHHhc---c-----ccC--CchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5678899888888876543210 0 000 01234455666666666665555554
No 68
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.41 E-value=4.9e-05 Score=84.94 Aligned_cols=81 Identities=16% Similarity=0.082 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS 393 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~ 393 (478)
+.+++++++++++..++.. +.++++...++.++......+....++....|.+.|+..+|+....
T Consensus 628 l~~~~~lsai~~ll~~~~~---------------s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~ 692 (742)
T TIGR01299 628 LAGSMVLSCISCFFLSFGN---------------SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNAL 692 (742)
T ss_pred HHHHHHHHHHHHHHHHHHc---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 5667777777766555432 2233444456677777777888888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhh
Q 011747 394 FGFASYLSSLLITIVH 409 (478)
Q Consensus 394 ~a~g~~l~~~l~~~~~ 409 (478)
..+|..+++.+++.+.
T Consensus 693 ~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 693 CKAAAVLGILIFGSFV 708 (742)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998886543
No 69
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.39 E-value=1.2e-05 Score=82.27 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc--chhHhH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS--WVIGFG 112 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g--~~~~F~ 112 (478)
+.+.++++..+.++|.|...+...++..|.++++ +|.++.+++..+.++|..+++.+.+.+.+..+ |+..|.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 4566777788889999999999999999988754 48889999999999999999988777766555 999998
Q ss_pred HHHHHHHHHHH
Q 011747 113 IPTVLMIGAII 123 (478)
Q Consensus 113 i~~v~m~~~li 123 (478)
+.++..++.++
T Consensus 173 ~~~~~~~~~~~ 183 (405)
T TIGR00891 173 ISILPIIFALW 183 (405)
T ss_pred HHHHHHHHHHH
Confidence 87665555443
No 70
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.39 E-value=6.5e-05 Score=77.41 Aligned_cols=82 Identities=10% Similarity=-0.013 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+...+.++-.+.++|.|.. ++..+..++.++++ +|.++.+++..+.++|..+++.+.+++.+++||+..|.+.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 5667778888888998864 44455557777643 5889999999999999999999999998889999999885
Q ss_pred HHHHHHHHH
Q 011747 115 TVLMIGAII 123 (478)
Q Consensus 115 ~v~m~~~li 123 (478)
++.-++..+
T Consensus 151 ~~l~~~~~~ 159 (368)
T TIGR00903 151 AAVAAAGII 159 (368)
T ss_pred HHHHHHHHH
Confidence 554444333
No 71
>PRK03699 putative transporter; Provisional
Probab=98.36 E-value=0.00012 Score=75.80 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeE-EeeccchhHhHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI-QDSVSWVIGFGI 113 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i-~~~~g~~~~F~i 113 (478)
+.+.++++..+.+++.|...++..+.+.+.++++ +|.......+...++|+.+++.+.+++ .+..||+..|.+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4566677778888999988899999999988543 366777777888899998888777765 445799999998
Q ss_pred HHHHHHHHHHHH
Q 011747 114 PTVLMIGAIILF 125 (478)
Q Consensus 114 ~~v~m~~~liif 125 (478)
.++..++..+..
T Consensus 168 ~~~~~~~~~~~~ 179 (394)
T PRK03699 168 IGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHH
Confidence 777665554443
No 72
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.34 E-value=4e-05 Score=81.65 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE---------eec
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ---------DSV 105 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~---------~~~ 105 (478)
+...+++...+.++|.|..-+ ....+++.++++ +|..+..+.+...|+|+.+++.+.+.+. ...
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 344555556667777776533 344567777643 4778888888888888887765554332 125
Q ss_pred cchhHhHHHHHHHHHHHHHH
Q 011747 106 SWVIGFGIPTVLMIGAIILF 125 (478)
Q Consensus 106 g~~~~F~i~~v~m~~~liif 125 (478)
||+..|.+.++..++..+..
T Consensus 196 gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 89999998777665554443
No 73
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.33 E-value=3.3e-06 Score=87.16 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc-chhHhH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFG 112 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g-~~~~F~ 112 (478)
.+.+.+.+.=.+.++|-..+-|...++++|.|+++ +|.+.|.||||+|++|+.+|..+..++.+.-+ |+++|.
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 56777888889999999999999999999999876 59999999999999999999988889988655 999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011747 113 IPTVLMIGAIILFLV 127 (478)
Q Consensus 113 i~~v~m~~~liifl~ 127 (478)
..++.+++..++...
T Consensus 193 ~~avl~vi~~~L~~~ 207 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFL 207 (493)
T ss_pred eehHHHHHHHHHHHh
Confidence 888777766665443
No 74
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.33 E-value=0.0001 Score=76.11 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH-HHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL-LFC 392 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl-~~l 392 (478)
+.+|.++.++++...... .++++++...++.+++.........++..+..|++.++...+. +..
T Consensus 287 l~~~~~l~~l~~~~~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~ 351 (396)
T TIGR00882 287 LLIAGTIMSVRIIGSSFA---------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQF 351 (396)
T ss_pred HHHHHHHHHHHHHHHHhc---------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHH
Confidence 566666666655432211 3566777788899998877777788888888899998887765 557
Q ss_pred HhhHHHHHHHHHHHHhh
Q 011747 393 SFGFASYLSSLLITIVH 409 (478)
Q Consensus 393 ~~a~g~~l~~~l~~~~~ 409 (478)
...+|+.+++.+.+...
T Consensus 352 ~~~lg~~~~~~l~G~l~ 368 (396)
T TIGR00882 352 AKQLAMIFLSTLAGNMY 368 (396)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 77888888877776554
No 75
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.31 E-value=0.0002 Score=76.44 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceee----eEE----eeccchh
Q 011747 38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV----YIQ----DSVSWVI 109 (478)
Q Consensus 38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~----~i~----~~~g~~~ 109 (478)
.+.+.-++.++|.|+.-|+..++..|.++++ +|..+..+...+.++|..++..+.. ++. .++||++
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 3566677889999999999999999998754 3566677778778888877764432 222 2589999
Q ss_pred HhHHHHHH
Q 011747 110 GFGIPTVL 117 (478)
Q Consensus 110 ~F~i~~v~ 117 (478)
.|.+.++.
T Consensus 194 ~f~i~~~~ 201 (490)
T PRK10642 194 PFFIALPL 201 (490)
T ss_pred HHHHHHHH
Confidence 99986643
No 76
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.31 E-value=0.00013 Score=76.47 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE--------eeccch
Q 011747 37 GVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWV 108 (478)
Q Consensus 37 ~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~--------~~~g~~ 108 (478)
..+.+.-.+.++|.|+.-|...+++.|.++++ +|..+.++.+.+.++|.++++.+...+. ..+||+
T Consensus 125 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr 198 (432)
T PRK10406 125 ALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWR 198 (432)
T ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchH
Confidence 45666777889999999999999999988754 3667788889999999888876543332 258999
Q ss_pred hHhHHHHHHHHHH
Q 011747 109 IGFGIPTVLMIGA 121 (478)
Q Consensus 109 ~~F~i~~v~m~~~ 121 (478)
..|.+.++..++.
T Consensus 199 ~~F~i~~~~~ll~ 211 (432)
T PRK10406 199 IPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 9999876654443
No 77
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.29 E-value=8.3e-05 Score=79.66 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE-------------
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ------------- 102 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~------------- 102 (478)
...++++..+.++|.|+.-+....++.+.++++ .|.++.++++.+.++|.++++.+...+.
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 188 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE 188 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 567888899999999999999999999999865 4888899999999999888875543221
Q ss_pred ----------eeccchhHhHHHHHHHHHHHH
Q 011747 103 ----------DSVSWVIGFGIPTVLMIGAII 123 (478)
Q Consensus 103 ----------~~~g~~~~F~i~~v~m~~~li 123 (478)
.+.+|++.|.+.++..++..+
T Consensus 189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 189 ASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred ccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 124899999887766555443
No 78
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.27 E-value=5e-05 Score=79.84 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeee-EEeeccchhHhHHH
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVY-IQDSVSWVIGFGIP 114 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~-i~~~~g~~~~F~i~ 114 (478)
...+++...+.+++.|..-+.......|.++++ +|..++++++.+.++|..+++.+.+. +....||+.+|.+.
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~ 191 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP 191 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 445556667778888888888888888888654 48899999999999999888766554 44457999999998
Q ss_pred HHHHHHHHHHH
Q 011747 115 TVLMIGAIILF 125 (478)
Q Consensus 115 ~v~m~~~liif 125 (478)
++..++..+..
T Consensus 192 ~~~~~i~~~~~ 202 (438)
T TIGR00712 192 AICAIIVALFA 202 (438)
T ss_pred HHHHHHHHHHH
Confidence 77766654443
No 79
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.25 E-value=0.00026 Score=72.91 Aligned_cols=86 Identities=14% Similarity=0.237 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i 113 (478)
.+.+.+.++=++.++..|.+-+-..+..+|..+++ ||.++..+.+.+..+.-.+|.-+..++.+.+|||..|.+
T Consensus 99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ 172 (394)
T COG2814 99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA 172 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence 46778888889999999999999999999999876 589999999999999988887788899999999999997
Q ss_pred HHHHHHHHHHHH
Q 011747 114 PTVLMIGAIILF 125 (478)
Q Consensus 114 ~~v~m~~~liif 125 (478)
-++.-+++++..
T Consensus 173 ia~l~ll~~~~~ 184 (394)
T COG2814 173 IAVLALLALLLL 184 (394)
T ss_pred HHHHHHHHHHHH
Confidence 655554444443
No 80
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.23 E-value=7.8e-05 Score=79.11 Aligned_cols=311 Identities=14% Similarity=0.192 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEee-ccchhHhHHHHH
Q 011747 38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGIPTV 116 (478)
Q Consensus 38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~-~g~~~~F~i~~v 116 (478)
.+.+.-++-+++.|..-|++..+.++=.+++ +|.++.++.|.+..+|.+++.-+++++.+. .||...|.+.++
T Consensus 130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~ 203 (466)
T KOG2532|consen 130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPPN------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGI 203 (466)
T ss_pred hhHHHHHHhHHHHhHHHhhhhceeeeECCHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHH
Confidence 4455567778889999999999988877654 489999999999999999998888988887 999999998776
Q ss_pred HHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhhhh
Q 011747 117 LMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKA 196 (478)
Q Consensus 117 ~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 196 (478)
.-++-.+++... |. ..|..+|.... .. + +.+...
T Consensus 204 ~g~i~~~~w~~~---~~-d~P~~h~~is~-----~E-l------------------------------------~~I~~~ 237 (466)
T KOG2532|consen 204 VGLIWFILWFLF---YS-DSPSKHPNISE-----KE-L------------------------------------KYIEKG 237 (466)
T ss_pred HHHHHHHHHHHH---hc-CCcccCCCCCH-----HH-H------------------------------------HHHHhc
Confidence 666555555432 22 23443332110 00 0 000000
Q ss_pred hhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCC-ccc
Q 011747 197 AMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP-GTV 275 (478)
Q Consensus 197 ~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~-~~~ 275 (478)
+.... .......|| |++++=.|++...+-.+.-..-.....+.....|+.-+ ++++.. +++
T Consensus 238 k~~~~-----~~~~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL--~f~v~~~G~~ 299 (466)
T KOG2532|consen 238 KSEAH-----VKKKPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL--GFDVRETGFL 299 (466)
T ss_pred ccccc-----cCCCCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--CCChhhhhHH
Confidence 00000 000012343 22333333333222111110000011111123444322 344433 445
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhH--HHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIG--IGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~--iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
.++.-+...+.-.+...+- -.++++. ...+..+|+. +++...++.+++.++... -+. |
T Consensus 300 salP~l~~~~~k~~~g~ls-D~l~~~~---ls~t~~rkifn~i~~~~~ai~l~~l~~~~~-------------~~~-~-- 359 (466)
T KOG2532|consen 300 SALPFLAMAIVKFVAGQLS-DRLTFRI---LSETTVRKIFNTIAFGGPAVFLLVLAFTSD-------------EHR-L-- 359 (466)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhcc---CchHhHHHHHHhHHHHHHHHHHHeeeecCC-------------Ccc-h--
Confidence 5555555444443333322 2233321 1235566764 444444444444433321 011 2
Q ss_pred HHHHHHHHHHHHHhhhHHHHH--Hhh-cChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcch
Q 011747 354 PQLILMGFCEAFNIIGQIEFF--NKQ-FPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRL 430 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~--~~~-aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~ 430 (478)
.+.++++++..+..-...-+. ... ||++. ++.||+-.+..+++..+++.+++.+-... .-+.|
T Consensus 360 ~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a-~~l~g~~~~~~~~~~~~~P~~vg~~~~~~---t~~eW---------- 425 (466)
T KOG2532|consen 360 LAVILLTIAIGLSGFNISGFYKNHQDIAPQHA-GFVMGIINFVGALAGFIAPLLVGIIVTDN---TREEW---------- 425 (466)
T ss_pred HHHHHHHHHHHHcccchhhhHhhhhhccchHH-HHHHHHHHHHHHHHHHHHHHheeeEeCCC---CHHHH----------
Confidence 233444555444444444444 333 87766 89999999999999999998886543210 00123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 011747 431 DYFYFLIAGLGGLNIVYFLYCA 452 (478)
Q Consensus 431 ~~~f~~la~l~~v~~vif~~~~ 452 (478)
...|++.+++.++..++|.+.+
T Consensus 426 ~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 426 RIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHhchheeEee
Confidence 4578889999998888888774
No 81
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.23 E-value=0.00053 Score=71.16 Aligned_cols=73 Identities=10% Similarity=0.175 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHH-HHhhceeeeEEeeccchhHhHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVI-LITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa-~~~~~~~~~i~~~~g~~~~F~i 113 (478)
+...+++...+.++|.+..-+...+.+.+.++++ +|.++.+++..+.++|. .+++.+.+++.+..||...+..
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 3445555556667777766666666677766543 58899999999999996 6788777788777886544443
No 82
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.20 E-value=0.00014 Score=73.77 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec--cchhHhH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV--SWVIGFG 112 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~--g~~~~F~ 112 (478)
+...++++..+.++|.|...+...+...|.+++ +|.++.+++..+.|+|..+++.+.+++.+.. +|+..|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 445666777788899988888888888776642 3778899999999999999988777776544 3888888
Q ss_pred HHHHHHHHHH
Q 011747 113 IPTVLMIGAI 122 (478)
Q Consensus 113 i~~v~m~~~l 122 (478)
+.++..++..
T Consensus 159 ~~~~~~~~~~ 168 (355)
T TIGR00896 159 WWALPALLAL 168 (355)
T ss_pred HHHHHHHHHH
Confidence 7665544443
No 83
>PRK09669 putative symporter YagG; Provisional
Probab=98.19 E-value=0.00023 Score=74.88 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC-------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-------DHMKSIANSLLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP-------~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~ 410 (478)
+.+.++...++.++++....+...+.+.+.++ ++..|...|++.+..-+|..+|+.+++.+-+
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566688999999999999999988876 4567888999988888888888777765543
No 84
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.17 E-value=0.00016 Score=76.99 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC-------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-------DHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP-------~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+.++++...++.++++....+...++..+.+| ++..|.+.|.+.+..-+|..+++.+.+.+-
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566688899999999999999999877 455777999999988888888777766543
No 85
>PRK09952 shikimate transporter; Provisional
Probab=98.15 E-value=0.001 Score=69.93 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE--------eeccchh
Q 011747 38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWVI 109 (478)
Q Consensus 38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~--------~~~g~~~ 109 (478)
.+.+.-.+.++|.|+.-|...++..|.++++ +|....+....+.++|.+++..+..++. +.+||+.
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~ 200 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKN------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI 200 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence 3555567789999999999899999887754 3566677788888888888765444332 2579999
Q ss_pred HhHHHHHHHHH
Q 011747 110 GFGIPTVLMIG 120 (478)
Q Consensus 110 ~F~i~~v~m~~ 120 (478)
.|.+.++..++
T Consensus 201 ~f~~~~~~~l~ 211 (438)
T PRK09952 201 PFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHH
Confidence 99987765433
No 86
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.14 E-value=0.00044 Score=71.32 Aligned_cols=50 Identities=4% Similarity=-0.073 Sum_probs=38.7
Q ss_pred hhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHHHHHHHHHH
Q 011747 77 NSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 126 (478)
Q Consensus 77 ~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m~~~liifl 126 (478)
..+-....++..+|.+++....+++.+++||+..|.+.++..++..+..+
T Consensus 132 ~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~ 181 (390)
T TIGR02718 132 AKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVL 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777899999988888888889999999998887776665543
No 87
>PRK15075 citrate-proton symporter; Provisional
Probab=98.09 E-value=0.00039 Score=72.95 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeE--------Eeeccchh
Q 011747 38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI--------QDSVSWVI 109 (478)
Q Consensus 38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i--------~~~~g~~~ 109 (478)
.+.++-.+.++|.|+.-|+..++..|.++++ +|.++..++..+.|+|..+++.+.+.+ .+++||+.
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPG------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 3456667888999998898899999999754 477788887777777766655443332 24689999
Q ss_pred HhHHHHH
Q 011747 110 GFGIPTV 116 (478)
Q Consensus 110 ~F~i~~v 116 (478)
.|.+.++
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9987543
No 88
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.07 E-value=0.00067 Score=68.21 Aligned_cols=90 Identities=9% Similarity=-0.072 Sum_probs=67.7
Q ss_pred CCCchhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe------
Q 011747 30 SANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD------ 103 (478)
Q Consensus 30 ~~~~~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~------ 103 (478)
++...+.+.+.+++.+++.|.+...+..++++++.-+++ ++.+..|+.-.+..+|++++|++.+.+-.
T Consensus 4 ~~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~ 77 (310)
T TIGR01272 4 AASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIE------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDL 77 (310)
T ss_pred hHHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch
Confidence 344467899999999999999999999999999988654 25666778788888999999988765431
Q ss_pred ----------eccchhHhHHHHHHHHHHHHHH
Q 011747 104 ----------SVSWVIGFGIPTVLMIGAIILF 125 (478)
Q Consensus 104 ----------~~g~~~~F~i~~v~m~~~liif 125 (478)
..+|++.|.+-++...+..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 78 SMQVATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1478889985444444433343
No 89
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.05 E-value=0.0022 Score=65.96 Aligned_cols=88 Identities=13% Similarity=0.181 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC 392 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l 392 (478)
.-.+|...+.+++....+... .-+.+-+.+..+++|+|--+..+..++..-+.++++..|+.||+|-.
T Consensus 277 ~a~~G~~~~~~~f~lii~a~~------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGa 344 (403)
T PF03209_consen 277 TAALGCLLGALAFALIILAGP------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGA 344 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHH
Confidence 334676777777654433321 12456677889999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhhccc
Q 011747 393 SFGFASYLSSLLITIVHGVT 412 (478)
Q Consensus 393 ~~a~g~~l~~~l~~~~~~~~ 412 (478)
+.+++..++..+++...|..
T Consensus 345 aQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 345 AQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888776653
No 90
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.03 E-value=0.00062 Score=71.08 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE------eeccch
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ------DSVSWV 108 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~------~~~g~~ 108 (478)
+...++++-.+.++|.|..-|...+...+.++++ +|..+..++..+.++|..+++.+.+++. +..||+
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 4566777788999999998888888888888753 4778889999999999999988877664 247999
Q ss_pred hHhHHHHHHHHHHHHHH
Q 011747 109 IGFGIPTVLMIGAIILF 125 (478)
Q Consensus 109 ~~F~i~~v~m~~~liif 125 (478)
+.|.+.++..++..++.
T Consensus 169 ~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 169 WLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999766655544433
No 91
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.87 E-value=0.0011 Score=69.30 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS 393 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~ 393 (478)
+.+++++.+++.+..++. -+.++++...++.|++|....|....++.+..|++.|+..+|++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~ 140 (412)
T TIGR02332 76 IAGIMVLWGIASTATMFA---------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA 140 (412)
T ss_pred HHHHHHHHHHHHHHHHHh---------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 466777777766655432 24567778889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhh
Q 011747 394 FGFASYLSSLLITIVH 409 (478)
Q Consensus 394 ~a~g~~l~~~l~~~~~ 409 (478)
.++|..++..+++...
T Consensus 141 ~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 141 MPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988876553
No 92
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.79 E-value=0.00067 Score=68.55 Aligned_cols=137 Identities=15% Similarity=0.096 Sum_probs=93.7
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
+++.+...+..++..|+...+. +|.++| +-+.++.++.+++.+..+.. .+.+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 85 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWLL----DRFGAR-------KTLAVFIVIWGVFTGLQAFA---------------GAYVSL 85 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH----HhcCcc-------eeeHHHHHHHHHHHHHHHHH---------------cCHHHH
Confidence 3455666666666666666543 454321 12455666666655544332 256667
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHH
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY 432 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~ 432 (478)
+...++.|++.....+....++.+..|++.|+..+|++.....+|..+++.+...+.+.. +| .+
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~----------~~ 149 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------SW----------QW 149 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------Cc----------hH
Confidence 788899999999999999999999999999999999999999999999988877543211 22 34
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011747 433 FYFLIAGLGGLNIVYFLYC 451 (478)
Q Consensus 433 ~f~~la~l~~v~~vif~~~ 451 (478)
.|+..+++.++..++.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 150 AFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred HHHHHHHHHHHHHHHhhhe
Confidence 5566666666555544433
No 93
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.75 E-value=0.0016 Score=65.16 Aligned_cols=132 Identities=17% Similarity=0.257 Sum_probs=92.3
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
++.+...+...+..|+...+. +|++ +-+-+.+|.++.+++.+...+. .+.++++
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l~----dr~g-------~r~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~ 89 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYLS----DRFG-------RRRVLIIGLLLFALGSLLLAFA---------------SNFWLLL 89 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHS--------HHHHHHHHHHHHHHHHHHHHHH---------------CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcC-------CeeeEeehhhhhhhHHHHhhhh---------------hhHHHHh
Confidence 344555555666666665543 4432 2224566777777774444322 1334677
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHH
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF 433 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~ 433 (478)
...++.|+++....+....++.+..|++.|+..+|++.....+|..+++.+++...+.- +| .+.
T Consensus 90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~----------~~~ 153 (352)
T PF07690_consen 90 IARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GW----------RWA 153 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HH----------CCH
T ss_pred hhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------cc----------ccc
Confidence 88899999999999999999999999999999999999999999999998887664210 12 234
Q ss_pred HHHHHHHHHHHHHH
Q 011747 434 YFLIAGLGGLNIVY 447 (478)
Q Consensus 434 f~~la~l~~v~~vi 447 (478)
|+..+++.++..++
T Consensus 154 ~~~~~~~~~~~~il 167 (352)
T PF07690_consen 154 FLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhh
Confidence 66677777766654
No 94
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.67 E-value=0.0033 Score=64.94 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=77.2
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
++.+...+..++..++..++ .+|.+++ +-+.++.++.+++.+..+.. .+.++++
T Consensus 54 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 107 (406)
T PRK11551 54 WAFSAGILGLLPGALLGGRL----ADRIGRK-------RILIVSVALFGLFSLATAQA---------------WDFPSLL 107 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHh---------------ccHHHHH
Confidence 34455555555566555543 3454321 23555666655554433321 3566777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
...++.+++.-...+...+.+.+..|++.|+..+|++.....+|..+++.+....
T Consensus 108 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 108 VARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999888776544
No 95
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.014 Score=62.54 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE------eeccc
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ------DSVSW 107 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~------~~~g~ 107 (478)
.+.+.+.+--.++++-.+..-|+.....|.-|+++ ++..-+.++|.+.++|..+|.+++..+. ...||
T Consensus 132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 34566666678889999999999999999999876 3677788999999999999998877752 35899
Q ss_pred hhHhHHHHHHHHHHHHH
Q 011747 108 VIGFGIPTVLMIGAIIL 124 (478)
Q Consensus 108 ~~~F~i~~v~m~~~lii 124 (478)
++.|.+.++.+++..++
T Consensus 206 ~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIV 222 (495)
T ss_pred eeehhHHHHHHHHHHhe
Confidence 99999988776665554
No 96
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.61 E-value=0.0031 Score=64.10 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=78.6
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
+..+...+..++..|+...+ .+|.++ -+-+.+|.++.+++.+..+.. -+.++++
T Consensus 44 ~~~~~~~~~~~~~~~~~g~l----~d~~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 97 (385)
T TIGR00710 44 MTLTLYLLGFAAGQLLWGPL----SDRYGR-------RPVLLLGLFIFALSSLGLALS---------------NNIETLL 97 (385)
T ss_pred HHHHHHHHHHHHHHHhhhhH----HHhcCC-------hHHHHHHHHHHHHHHHHHHHH---------------ccHHHHH
Confidence 34444555555555555543 344432 223556776766666554332 2455677
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+++...
T Consensus 98 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 98 VLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999998888877554
No 97
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.58 E-value=0.009 Score=62.69 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=76.2
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747 275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP 354 (478)
Q Consensus 275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~ 354 (478)
+.+...+...+..|+..++ ..|.+. -+=+.+|+++.+++.+..+.. -+.+.++.
T Consensus 63 ~~~~~~~~~~~~~~~~G~l----~dr~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~ 116 (434)
T PRK11663 63 LATLFYITYGVSKFVSGIV----SDRSNA-------RYFMGIGLIATGIINILFGFS---------------SSLWAFAL 116 (434)
T ss_pred HHHHHHHHHHHHHhhhhHH----HhhcCC-------chhHHHHHHHHHHHHHHHHHH---------------hHHHHHHH
Confidence 3344444555555555543 345432 123567777777766544432 23444556
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
..++.++++....+.....+.+..|++.|+..+|++.....+|..+++.+.+.+.
T Consensus 117 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 117 LWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred HHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899998889999999999999999999999999999999999988776554
No 98
>PRK03545 putative arabinose transporter; Provisional
Probab=97.57 E-value=0.0045 Score=63.74 Aligned_cols=83 Identities=19% Similarity=0.062 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH
Q 011747 312 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF 391 (478)
Q Consensus 312 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~ 391 (478)
+-+.+++++.+++.+..+.. .+.++++...+++|+++....+....++.+..|++.|+..+|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~ 139 (390)
T PRK03545 75 KLLIGLFVLFIASHVLSALA---------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLA 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHH
Confidence 44566777777776554432 346667777889999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhh
Q 011747 392 CSFGFASYLSSLLITIVH 409 (478)
Q Consensus 392 l~~a~g~~l~~~l~~~~~ 409 (478)
...++|..+++.++....
T Consensus 140 ~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 140 TGTALAMVLGLPLGRVIG 157 (390)
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 999999999988876553
No 99
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.0034 Score=64.73 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhcee--eeEEeeccchhHhH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL--VYIQDSVSWVIGFG 112 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~--~~i~~~~g~~~~F~ 112 (478)
+.+.+.+-+.+-+.-.|.=-|...-.++.=|+.+ +|-+..++.-.+-|+|+.+.+.++ +++..+++|+.+|.
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 3444444445555555555577777777777754 488889999999999999999888 88888889999999
Q ss_pred HHHHH-HHHHHHHHHhcc
Q 011747 113 IPTVL-MIGAIILFLVGK 129 (478)
Q Consensus 113 i~~v~-m~~~liifl~g~ 129 (478)
.|++. ++++++.+..+|
T Consensus 190 ~pgiiaiival~~~~~~r 207 (448)
T COG2271 190 FPGIIAIIVALILLFLLR 207 (448)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 98664 555555555544
No 100
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.56 E-value=0.0057 Score=63.91 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE-----------
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ----------- 102 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~----------- 102 (478)
.+.+.+.++..+.++|.|...+..++.+.+..+++ ++.+..++.....++|+.+++.+.+.+.
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 45677888889999999999999999988876543 3556678888888999999987765441
Q ss_pred ---------------eeccchhHhHHHHHHHHHHHHH
Q 011747 103 ---------------DSVSWVIGFGIPTVLMIGAIIL 124 (478)
Q Consensus 103 ---------------~~~g~~~~F~i~~v~m~~~lii 124 (478)
+..+|+..|.+.++..++..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1247999998766644444333
No 101
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.53 E-value=0.0035 Score=66.24 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=81.9
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
++..+...+..++..|+..++. +|+++ -+-+.+|.++.+++.+..+.. .+.+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~l 93 (485)
T TIGR00711 40 QWVITSYMLANAISIPLTGWLA----KRFGT-------RRLFLISTFAFTLGSLLCGVA---------------PNLELM 93 (485)
T ss_pred hHHHHHHHHHHHHHHHhHHHHH----HHhCc-------HHHHHHHHHHHHHHHHHHhCc---------------CCHHHH
Confidence 4566666666677777666543 44422 123456666666655543321 355667
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+...+++|++.....+....++.+..|++.|+..+|++.....+|..+++.+++.+.
T Consensus 94 ~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 94 IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 788899999999999999999999999999999999999999999999888876554
No 102
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.52 E-value=0.004 Score=62.47 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=82.4
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
++.+...+..++..|+...+. +|+++ -+-+.++.++.+++.+........ ...+.+++.
T Consensus 38 ~~~~~~~~~~~i~~~~~G~l~----dr~g~-------r~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 96 (365)
T TIGR00900 38 LAALAGMLPYVVLSPIAGALA----DRYDR-------KKVMIGADLIRAVLVAVLPFVALL----------GGLNIWQVY 96 (365)
T ss_pred HHHHHHHHHHHHHHHhhhHHH----Hhhch-------hHHHHHHHHHHHHHHHHHHHHHHc----------CCCcHHHHH
Confidence 455556666666676666543 44432 122445555555555544443321 014677778
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
...++.+++..+..+...+++.+..|++.|+..+|++.....+|..+++.+++...
T Consensus 97 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 97 VLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999988877654
No 103
>PRK11462 putative transporter; Provisional
Probab=97.51 E-value=0.011 Score=62.89 Aligned_cols=82 Identities=11% Similarity=0.134 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe-------eccchhHh
Q 011747 39 LVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-------SVSWVIGF 111 (478)
Q Consensus 39 ~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~-------~~g~~~~F 111 (478)
+++...+..++.-++--.-.+++++.-++.+ +|.+..++...+.|+|.++++.+...+.+ ..||....
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~ 186 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGI 186 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence 3333344455666666666688887776543 58889999999999998777654322111 13566655
Q ss_pred HHHHHHHHHHHHHH
Q 011747 112 GIPTVLMIGAIILF 125 (478)
Q Consensus 112 ~i~~v~m~~~liif 125 (478)
.+-++..+++..+.
T Consensus 187 ~i~~ii~~i~~~i~ 200 (460)
T PRK11462 187 AVLSVVAFMMLAFC 200 (460)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444443
No 104
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.50 E-value=0.012 Score=63.09 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=82.0
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
+|..+...+...+++|+..++. .|+++ -+-+.+|.++.+++.+..+.. -|.+++
T Consensus 44 ~~~~~~~~l~~~~~~~~~G~l~----D~~Gr-------k~~l~~~~~~~~~~~~~~~~a---------------~~~~~l 97 (495)
T PRK14995 44 LWIIDIYSLVMAGMVLPMGALG----DRIGF-------KRLLMLGGTLFGLASLAAAFS---------------PTASWL 97 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhcc-------HHHHHHHHHHHHHHHHHHHHc---------------CCHHHH
Confidence 4555555666666777666544 44432 234566777777766655432 356667
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhh-cChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQ-FPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~-aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~ 410 (478)
+...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+|+.+++.+.+
T Consensus 98 i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 98 IATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7888999999999999888888676 578999999999999999999999999876653
No 105
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.50 E-value=0.0016 Score=68.97 Aligned_cols=87 Identities=14% Similarity=0.034 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH
Q 011747 312 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF 391 (478)
Q Consensus 312 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~ 391 (478)
+-+.+++++.+++.+..+..... ...+.+.++...++.|++|-...|.....+.+..|++.||..+|++.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~ 164 (467)
T PRK09556 95 QFLPFLLILSAICMLGFGASLGS----------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWN 164 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHHhc----------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeee
Confidence 34677777777766555543210 12456677788899999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHh
Q 011747 392 CSFGFASYLSSLLITIV 408 (478)
Q Consensus 392 l~~a~g~~l~~~l~~~~ 408 (478)
....+|..+++.+....
T Consensus 165 ~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 165 ISHNLGGAGAGGVALWG 181 (467)
T ss_pred cccchhhhHHHHHHHHH
Confidence 99999999998876533
No 106
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.0001 Score=76.41 Aligned_cols=137 Identities=17% Similarity=0.261 Sum_probs=98.7
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH-
Q 011747 275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA- 353 (478)
Q Consensus 275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv- 353 (478)
+|..-.+.-+++.|++..+- .|+ ++.+-|++|.++=+++++..++. +-+||+
T Consensus 73 l~~vf~v~~~i~sPl~gyLa----dry-------NR~~v~~vG~~iW~~Av~~~~fs----------------~~Fwq~~ 125 (493)
T KOG1330|consen 73 LQTVFIVVFMIASPLFGYLA----DRY-------NRKRVIAVGIFIWTLAVFASGFS----------------NHFWQVL 125 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHH----hhc-------CcceEEeeHHHHHHHHHHHHHHH----------------HHHHHHH
Confidence 44444445556777777643 343 33456889988888887655543 345655
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHH
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF 433 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~ 433 (478)
..=-+.|+||.-.+|+.-+++.+..|+..||+++|+|+++.-+|+.+|...++.+.+.+ ..| .+=
T Consensus 126 l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-----~~W----------r~a 190 (493)
T KOG1330|consen 126 LCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-----FWW----------RWA 190 (493)
T ss_pred HHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-----cce----------EEE
Confidence 56789999999999999999999999999999999999999999999888877666543 114 123
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 011747 434 YFLIAGLGGLNIVYFLYCAR 453 (478)
Q Consensus 434 f~~la~l~~v~~vif~~~~~ 453 (478)
|+.-|+++++.+++.+++.+
T Consensus 191 f~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 191 FRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred EEeehHHHHHHHHHHHhhcc
Confidence 56677777776665554433
No 107
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.49 E-value=0.05 Score=58.13 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 412 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~ 412 (478)
.-+|. .-++.|+.---..+..=+++.+..|++..+...|+|-++.=.++.+|+.+.+++.+.+
T Consensus 381 ~~f~~--~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 381 WEFWV--LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHH--HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33553 3356677766778888899999999999999999999999999999999998887653
No 108
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.46 E-value=0.007 Score=61.85 Aligned_cols=111 Identities=8% Similarity=0.156 Sum_probs=80.1
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
++..++..+...+..|+...+. .|.++ -+-+.++.++.+++.+..++. .+.+++
T Consensus 50 g~~~~~~~~~~~~~~~~~G~l~----Dr~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~l 103 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGLWG----DRYGR-------RLPMVTSIVLFSAGTLACGFA---------------PGYITM 103 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhcc-------HHHHHHHHHHHHHHHHHHHHh---------------ccHHHH
Confidence 3455556666666666666543 45432 123455666655555443322 245566
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
....++.|+++....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus 104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 104 FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999999999999999988876554
No 109
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.42 E-value=0.0016 Score=65.58 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=77.2
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
++.+...+...+..|+..++ .+|.+++ +-+.+|.++.+++.+..+.. .+.++++
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 87 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSV----SDRSNPR-------VFLPIGLILCAIVNLFFGFS---------------TSLWVMA 87 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHH----HHhhCCe-------ehhHHHHHHHHHHHHHHHHh---------------hhHHHHH
Confidence 34455555555555555543 3454321 23566777777666655433 2455667
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHH-HHHHHh
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSS-LLITIV 408 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~-~l~~~~ 408 (478)
...++.+++.-+..+.....+.+..|++.|+..+|++.....+|..+++ .+....
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 143 (379)
T TIGR00881 88 ALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI 143 (379)
T ss_pred HHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999988 344433
No 110
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.42 E-value=0.0071 Score=62.19 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=75.1
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747 276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ 355 (478)
Q Consensus 276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~ 355 (478)
.++..+..++..|+..++. .|.++| +-+.+|.++.+++.+..... .+.++++..
T Consensus 44 ~~~~~~~~~~~~~~~G~l~----Dr~g~r-------~~l~~~~~~~~i~~~~~~~~---------------~~~~~~~~~ 97 (392)
T PRK10473 44 FSVYLAGMAAAMLFAGKIA----DRSGRK-------PVAIPGAALFIIASLLCSLA---------------ETSSLFLAG 97 (392)
T ss_pred HHHHHHHHHHHHHhHhHHH----HHhCCh-------HHHHHHHHHHHHHHHHHHHh---------------CcHHHHHHH
Confidence 3444444555566666544 344321 12445666666655543321 245666777
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
.++++++..+..+.....+.+..|++.|+..+|++.....+|..+++.++....
T Consensus 98 ~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 98 RFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999888888888887776553
No 111
>TIGR00895 2A0115 benzoate transport.
Probab=97.40 E-value=0.0023 Score=65.01 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS 393 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~ 393 (478)
+.+|.++.+++.+..... .+.++++...++.+++.-...+.....+.+..|++.|+..+|++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 149 (398)
T TIGR00895 85 LLWSILLFSVFTLLCALA---------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG 149 (398)
T ss_pred HHHHHHHHHHHHHHHHHc---------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhH
Confidence 455666666655544322 24556677889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhh
Q 011747 394 FGFASYLSSLLITIVH 409 (478)
Q Consensus 394 ~a~g~~l~~~l~~~~~ 409 (478)
..+|..+++.+.+...
T Consensus 150 ~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 150 YPIGAAVGGFLAGWLI 165 (398)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988876554
No 112
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.39 E-value=0.022 Score=59.08 Aligned_cols=108 Identities=11% Similarity=0.032 Sum_probs=80.6
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747 276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ 355 (478)
Q Consensus 276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~ 355 (478)
.+...+...+..|+...+ ..|.+ +-+-+.+++++.+++.+..+.. .+.++++..
T Consensus 61 ~~~~~~~~~~~~~~~g~l----~Dr~g-------rr~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~ 114 (394)
T PRK10213 61 VTVTAFVAMFASLFITQT----IQATD-------RRYVVILFAVLLTLSCLLVSFA---------------NSFSLLLIG 114 (394)
T ss_pred HHHHHHHHHHHHHHHHHH----hcccC-------cHHHHHHHHHHHHHHHHHHHHH---------------ChHHHHHHH
Confidence 345555666666655543 34442 2234567777777766554332 356677788
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
.++.|++.-...|...+.+.+..|++.|+..+|++....++|..+++.+++...
T Consensus 115 r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 115 RACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998887664
No 113
>PRK10133 L-fucose transporter; Provisional
Probab=97.39 E-value=0.017 Score=60.83 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceee
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 99 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~ 99 (478)
.+...+.++..+.++|.|...+..++++.|..+++ ++....+++.....+|..+++.+.+
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~s~~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999998754322 2333466666667788887775543
No 114
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.37 E-value=0.0064 Score=64.14 Aligned_cols=86 Identities=17% Similarity=0.067 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHH
Q 011747 37 GVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTV 116 (478)
Q Consensus 37 ~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v 116 (478)
....+.+.+..+|.....-..-+++.+.-++++. .+...=++.|.+.++|++++..+.+++.++.+++..|.++++
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~ 162 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAA 162 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHH
Confidence 3444556677788877777777777777665432 255556788999999999999899999888999999999877
Q ss_pred HHHHHHHHHH
Q 011747 117 LMIGAIILFL 126 (478)
Q Consensus 117 ~m~~~liifl 126 (478)
...+..+..+
T Consensus 163 ~~~l~~~~~~ 172 (433)
T PF03092_consen 163 LPLLMLIVAL 172 (433)
T ss_pred HHHHHHHHHH
Confidence 7666655433
No 115
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.34 E-value=0.014 Score=60.90 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC 392 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l 392 (478)
-+.+|+++.+++.+..+.. .+.++++..-+++|+++.+..+.......+.-|++.++..+|++..
T Consensus 83 ~l~~~~~~~~~~~~~~~~a---------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (413)
T PRK15403 83 VLITGALIFTLACAATLFT---------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITS 147 (413)
T ss_pred HHHHHHHHHHHHHHHHHHc---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3556666666655444322 3566777888999999988777777777788899999999999999
Q ss_pred HhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHH
Q 011747 393 SFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVY 447 (478)
Q Consensus 393 ~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vi 447 (478)
...+|..+++.+++...+. .+| .+-|+..+++.++..+.
T Consensus 148 ~~~~~~~~g~~lg~~l~~~------~gw----------~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 148 IVLVAPIIGPLSGAALMHF------VHW----------KVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHHHHHHHHHh------cCH----------HHHHHHHHHHHHHHHHH
Confidence 9999999988887655421 123 34556666666655543
No 116
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.32 E-value=0.018 Score=59.31 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=72.5
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747 275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP 354 (478)
Q Consensus 275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~ 354 (478)
..++..+...+..|+..++. .|.++ -+-+.++.++.+++.+..... .+.++++.
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 112 (408)
T PRK09874 59 VFSITFLFSAIASPFWGGLA----DRKGR-------KIMLLRSALGMGIVMVLMGLA---------------QNIWQFLI 112 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHh----hhhCc-------HHHHHHHHHHHHHHHHHHHHH---------------hhHHHHHH
Confidence 44455555666666665543 44432 122445555555555443321 34566777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
..++.+++..+ .+...+.+.+..|++.|+..+|++.....+|..+++.+.+...
T Consensus 113 ~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 166 (408)
T PRK09874 113 LRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA 166 (408)
T ss_pred HHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888665 4667788889999999999999999988999888888877554
No 117
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.31 E-value=0.0023 Score=67.67 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS 393 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~ 393 (478)
+.+++++.+++.+...... ..+.++++..-+++|++|-...|.....+.+..|++.|+..+|++...
T Consensus 109 l~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 175 (465)
T TIGR00894 109 IGIGMFLSSVISIVIPWAA-------------GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG 175 (465)
T ss_pred hHHHHHHHHHHHHHHHHHH-------------HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4566666666554433221 134566778889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhh
Q 011747 394 FGFASYLSSLLITIVH 409 (478)
Q Consensus 394 ~a~g~~l~~~l~~~~~ 409 (478)
..+|..+++.+.+...
T Consensus 176 ~~~g~~i~~~l~~~l~ 191 (465)
T TIGR00894 176 FQLGTFIFLPISGWLC 191 (465)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887654
No 118
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.30 E-value=0.018 Score=48.87 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+.++.....++.+++.-...+.....+.+..|++.|+..+|++.....+|..+++.+.+...
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 34556677899999999999999999999999999999999999999999999988876554
No 119
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.013 Score=60.52 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=104.5
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhH-HHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIG-IGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW 351 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~-iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~w 351 (478)
+++-+...+...+..|++..+. .|+. .||.- ..+.+..+|-+..++. -|.+.
T Consensus 51 G~lis~yAl~~ai~ap~l~~lt----~r~~--------Rr~lLl~~l~lFi~~n~l~alA---------------p~f~~ 103 (394)
T COG2814 51 GQLITAYALGVALGAPLLALLT----GRLE--------RRRLLLGLLALFIVSNLLSALA---------------PSFAV 103 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----cccc--------hHHHHHHHHHHHHHHHHHHHHh---------------ccHHH
Confidence 5677888899999999887654 3332 12333 3344555555554443 45667
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchH
Q 011747 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD 431 (478)
Q Consensus 352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~ 431 (478)
++..=++.+++--...+++.+.+.+.+|++.|+..+|+-+....++..+|..++.++.+.- +| -
T Consensus 104 Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW----------R 167 (394)
T COG2814 104 LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW----------R 167 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH----------H
Confidence 8888899999999999999999999999999999999999999999999988888776431 34 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 011747 432 YFYFLIAGLGGLNIVYFLYCAR 453 (478)
Q Consensus 432 ~~f~~la~l~~v~~vif~~~~~ 453 (478)
.-|+.+++++++..+..+...+
T Consensus 168 ~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 168 ATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3577888888888777777766
No 120
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.28 E-value=0.0048 Score=64.18 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=77.9
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
++.+...+...+..|+...+. +|.++ .+-+.+|.++.+++.+....... ..+.++++
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~----d~~gr-------r~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 131 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLS----DRFGR-------KKSLLIIALLFVIGAILMGLAAF------------ALSVEMLI 131 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhh----hhhhh-------HHHHHHHHHHHHHHHHHHHHhcc------------ccchHHHH
Confidence 344455555556666665543 44421 22355666666666555443321 13445677
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHH
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLI 405 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~ 405 (478)
...++.|+++....+....++.+..|++.|+..+|++.....+|..++..+.
T Consensus 132 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 132 VGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999998887
No 121
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.25 E-value=0.027 Score=58.50 Aligned_cols=81 Identities=17% Similarity=0.130 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS 393 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~ 393 (478)
+.+|.++.+++++..... -+.|+++...+++++++....|...+.+.+.+|++.++..+|+....
T Consensus 79 l~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 143 (400)
T PRK11646 79 IVTGMLMRAAGFATMAIA---------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQ 143 (400)
T ss_pred HHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 456777777776654332 24667778889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhh
Q 011747 394 FGFASYLSSLLITIVH 409 (478)
Q Consensus 394 ~a~g~~l~~~l~~~~~ 409 (478)
..+|..+|+.+++...
T Consensus 144 ~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 144 DSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988887664
No 122
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.25 E-value=0.018 Score=59.80 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=79.8
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
+..+...+..++..|+..++. +|.++ -+-+.+|.++.+++.+..++. .+.++++
T Consensus 57 ~~~~~~~~~~~l~~~~~g~l~----dr~g~-------r~~l~~~~~~~~~~~~~~~~~---------------~~~~~l~ 110 (426)
T PRK12307 57 FLATAAFIGRPFGGALFGLLA----DKFGR-------KPLMMWSIVAYSVGTGLSGLA---------------SGVIMLT 110 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhCC-------hHHHHHHHHHHHHHHHHHHHH---------------hHHHHHH
Confidence 344555555566666555443 45432 223556777777766554433 2456677
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
...++.|+++-...+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus 111 ~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 111 LSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 78899999999999999999999999999999999999999999999887765543
No 123
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.25 E-value=0.022 Score=58.52 Aligned_cols=111 Identities=13% Similarity=0.029 Sum_probs=81.3
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
++..+.+.+..++..|+..++. +|.++ -+-+.+|.++.+++.+..+.. .+.+++
T Consensus 41 g~~~s~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~l~~~~---------------~~~~~l 94 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIALFS----SRYSL-------KHILLFLVALCVIGNAMFTLS---------------SSYLML 94 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----ccCcc-------HHHHHHHHHHHHHHHHHHHHh---------------CcHHHH
Confidence 3455666677777777666543 44432 234566777777766654432 346777
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+...++.|+++-...+.....+.+..|++.|+..+|++.....+|..++..+++.+.
T Consensus 95 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 95 AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 778899999999999998889999999999999999999888899888877776554
No 124
>PRK10054 putative transporter; Provisional
Probab=97.22 E-value=0.017 Score=59.93 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=75.5
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
++..++..+.-++..|+..++. .|.++| +-+.+|+++.+++++..++.. +.+..
T Consensus 46 g~~~s~~~~~~~~~~~~~G~l~----Dr~g~k-------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 99 (395)
T PRK10054 46 GYAMTIALTIGVVFSLGFGILA----DKFDKK-------RYMLLAITAFASGFIAIPLVN---------------NVTLV 99 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hhcCcc-------hhHHHHHHHHHHHHHHHHHHh---------------HHHHH
Confidence 3344555555566666666543 444321 235567777777766554332 23334
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+..+.+.+.+.....+.....+.+..|++.|+..+|+......+|..+++.+++...
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777778888888899999999999999999999999999988887654
No 125
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.17 E-value=0.072 Score=56.51 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC 392 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l 392 (478)
-+.++++.-++..+..++. -|.+.+...-++.|++|.... +...++++-.|++.|+.++|++..
T Consensus 94 vL~l~~l~Wsl~t~L~~fa---------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~s 157 (511)
T TIGR00806 94 VLVLQALSFVCVWLLLLLG---------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRA 157 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHH
Confidence 3455666555555554443 246667788899999999999 999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHh
Q 011747 393 SFGFASYLSSLLITIV 408 (478)
Q Consensus 393 ~~a~g~~l~~~l~~~~ 408 (478)
+..+|..+++.++++.
T Consensus 158 g~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 158 AVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 126
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.16 E-value=0.015 Score=59.22 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=76.2
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747 276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ 355 (478)
Q Consensus 276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~ 355 (478)
.++..+...+..|+...+ .+|.+ +.+-+.+|.++.+++.+..... .+.+.++..
T Consensus 32 ~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~ 85 (377)
T PRK11102 32 LSAYILGFAIGQLFYGPM----ADSFG-------RKPVILGGTLVFALAAVACALA---------------QTIDQLIYM 85 (377)
T ss_pred HHHHHHHHHHHHHhhchH----HhhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------ccHHHHHHH
Confidence 344444455555554443 34442 1234566777777766655432 234456677
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
.++.+++.....+...+++.+..|++.|+..+|++.....+|..+++.+.+...
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999888876554
No 127
>PRK10504 putative transporter; Provisional
Probab=97.15 E-value=0.038 Score=58.39 Aligned_cols=62 Identities=15% Similarity=-0.009 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+.++++...+++|++.-...|.....+.+..|++.++..+|+......+|..+++.+++.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45566677899999999999999999999999999999999999988999998888877654
No 128
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.14 E-value=0.0045 Score=62.63 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe----------e
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD----------S 104 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~----------~ 104 (478)
+.+.++++-.+.++|.+.+ +...+.++|.++++ +|..+.+++....|+|..+++.+.+.+.. .
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5666777777888887666 44567888888654 47788888888888888877766554432 3
Q ss_pred ccchhHh-HHHHHHH
Q 011747 105 VSWVIGF-GIPTVLM 118 (478)
Q Consensus 105 ~g~~~~F-~i~~v~m 118 (478)
.+|++.| .+.++..
T Consensus 163 ~~w~~~~~~~~~~~~ 177 (366)
T TIGR00886 163 LAWGWAFVIVPAGIL 177 (366)
T ss_pred ccccchhHHHHHHHH
Confidence 4899999 4433333
No 129
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0021 Score=65.65 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=110.2
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
+++-..-.++-++..|++..+. .|.+.+ --|.+|++++..+-++.++.+. .+.+
T Consensus 109 G~LFaskA~~qllvnp~~G~l~----~~iGy~-------ipm~~Gl~vmf~sTilFafg~s---------------y~~l 162 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLI----DRIGYK-------IPMVAGLFVMFLSTILFAFGNS---------------YPML 162 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhH----HHhccc-------cHHHHHHHHHHHHHHHHHHcch---------------hHHH
Confidence 3444445555566666666544 344321 2378999999999888877653 3347
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhh-HHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchH
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHM-KSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD 431 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~-ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~ 431 (478)
+..-.++|+|..+++..|++...+.-|+.- ||..||.-+-..++|..+|+..++.+++... ...
T Consensus 163 ~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G---------------k~a 227 (464)
T KOG3764|consen 163 FVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG---------------KSA 227 (464)
T ss_pred HHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC---------------CcC
Confidence 788899999999999999999999999966 6999999999999999999999887776421 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccC
Q 011747 432 YFYFLIAGLGGLNIVYFLYCARRYRYKSG 460 (478)
Q Consensus 432 ~~f~~la~l~~v~~vif~~~~~~~~~~~~ 460 (478)
=|.+++.++++...+-+++...++..++
T Consensus 228 -PFlVL~~v~Lld~~L~l~vi~p~~~~~~ 255 (464)
T KOG3764|consen 228 -PFLVLAIVLLLDGALQLLVIEPTEMDPD 255 (464)
T ss_pred -cHHHHHHHHHHHHHHHHheeCccccCcc
Confidence 2789999999999888887776665553
No 130
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.12 E-value=0.046 Score=57.67 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC 392 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l 392 (478)
=+.+|.++.+++.+..++... ..-+.++++...++.++++....|.....+.+..|++.|+..+|++..
T Consensus 95 ~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 163 (452)
T PRK11273 95 FLPAGLILAAAVMLFMGFVPW-----------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 163 (452)
T ss_pred hHHHHHHHHHHHHHHHHhhhc-----------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHH
Confidence 356677777777765554421 012455667778899999998888777888889999999999999998
Q ss_pred HhhHHHHHHHHH
Q 011747 393 SFGFASYLSSLL 404 (478)
Q Consensus 393 ~~a~g~~l~~~l 404 (478)
...+|..+.+.+
T Consensus 164 ~~~~g~~~~~~l 175 (452)
T PRK11273 164 AHNVGGGLPPLL 175 (452)
T ss_pred HHHhhhhHHHHH
Confidence 888887554433
No 131
>PRK03699 putative transporter; Provisional
Probab=97.10 E-value=0.045 Score=56.46 Aligned_cols=80 Identities=9% Similarity=0.135 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS 393 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~ 393 (478)
+.++.++.+++.+..++. -+.++++...++.++++....+.....+.+..|++.|+..++.....
T Consensus 75 ~~~~~~~~~i~~~l~~~~---------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 139 (394)
T PRK03699 75 LIFGFALMILAVAGLMFS---------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSF 139 (394)
T ss_pred HHHHHHHHHHHHHHHHHc---------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHH
Confidence 455666666665544332 24556677889999999999998999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHh
Q 011747 394 FGFASYLSSLLITIV 408 (478)
Q Consensus 394 ~a~g~~l~~~l~~~~ 408 (478)
.++|..+++.+.+..
T Consensus 140 ~~~g~~~~~~~~~~l 154 (394)
T PRK03699 140 FSMAGMIFPIIAAYL 154 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887776543
No 132
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.10 E-value=0.005 Score=68.11 Aligned_cols=126 Identities=15% Similarity=0.041 Sum_probs=86.2
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhh--hhh-------------
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERG--RRA------------- 337 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~--~~~------------- 337 (478)
+++.+.+-+.-.+.+++..++ ..|. ...+-+++|+++.+++.+..++.+.. ++.
T Consensus 71 G~i~s~~~i~~~~~~i~v~~~----~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSYF----GTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred eeeeehhhHHHHHHHHHHHHh----hccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 334555555555555555443 2343 23456899999999998887765421 000
Q ss_pred ----hhccC--------------C-CC--cchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhH
Q 011747 338 ----SAHLH--------------P-MS--QVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGF 396 (478)
Q Consensus 338 ----~~~~~--------------g-~~--~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~ 396 (478)
.+..+ . .. ....+.++..-+++|+|+....+.+..++.+..|++.++.++|++.....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 00000 0 00 112344556779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 011747 397 ASYLSSLLITIVH 409 (478)
Q Consensus 397 g~~l~~~l~~~~~ 409 (478)
|..+|..+++.+.
T Consensus 220 G~~lG~llgg~l~ 232 (633)
T TIGR00805 220 GPAFGYLLGSFCL 232 (633)
T ss_pred hhHHHHHHHHHHH
Confidence 9999988887654
No 133
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.015 Score=62.14 Aligned_cols=95 Identities=12% Similarity=0.227 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCC
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDA 427 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~ 427 (478)
|.+-++..-+++|+.|-...|..-.+...-=.++.+++.||+|+.+.++|+.+|+.+...+.......+..+|
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW------- 205 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW------- 205 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-------
Confidence 4455667779999999999999999999999999999999999999999999999998765432211112234
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhh
Q 011747 428 GRLDYFYFLIAGLGGLNIVYFLYCA 452 (478)
Q Consensus 428 ~~~~~~f~~la~l~~v~~vif~~~~ 452 (478)
.+.|..-|+++++.+++.++.-
T Consensus 206 ---~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 206 ---RWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred ---eeehhHHHHHHHHHHheEEEEe
Confidence 4678888888888876555433
No 134
>PTZ00207 hypothetical protein; Provisional
Probab=97.09 E-value=0.039 Score=60.36 Aligned_cols=116 Identities=13% Similarity=0.118 Sum_probs=82.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH
Q 011747 312 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF 391 (478)
Q Consensus 312 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~ 391 (478)
+-+.+|.++.+++++..++... +....+++.+....++.|+|+.+..+.....+.+..| +.||.++|++.
T Consensus 92 ~vllig~ll~~iG~ll~ala~~---------~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~ 161 (591)
T PTZ00207 92 PIFVLSMTVFCLGTLLFALTFQ---------EVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMK 161 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---------ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHH
Confidence 3467888888888887766421 0012356667778899999999999999999988887 57899999999
Q ss_pred HHhhHHHHHHHHHH-HHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011747 392 CSFGFASYLSSLLI-TIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 455 (478)
Q Consensus 392 l~~a~g~~l~~~l~-~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~ 455 (478)
...++|..+.+.+. .++.. + ...+|+.++++.++..++.+.+.+..
T Consensus 162 ~~~gLGsaI~~~l~~~l~~~--------~----------~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 162 TFTGLGSAILGSIQLAFFSD--------N----------TSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------h----------HHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 99999998644444 33321 1 23567777887777766666554444
No 135
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.08 E-value=0.0069 Score=61.69 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+...-.+.+++-..+.+.-..++.+..|.+.||..+|+.....+++..+|+.+.+...
T Consensus 355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 4466688889999999999999999999999999999999999999999998886554
No 136
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.03 E-value=0.076 Score=54.46 Aligned_cols=110 Identities=11% Similarity=0.005 Sum_probs=79.9
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
+..+...+...+..|+..++. +|.++ .+-+.+|.++.+++++..+.. -|.++++
T Consensus 45 ~~~s~~~l~~~~~~~~~g~l~----dr~g~-------k~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~ 98 (381)
T PRK03633 45 VVSSSYFTGNLVGTLLAGYVI----KRIGF-------NRSYYLASLIFAAGCAGLGLM---------------VGFWSWL 98 (381)
T ss_pred HHHHHHHHHHHHHHHhHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHh---------------ccHHHHH
Confidence 344555555566666555543 44432 223567777777776654432 2456677
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+++.+.+...
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 99 AWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999988888889999999999999999999999999988886543
No 137
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.99 E-value=0.009 Score=66.12 Aligned_cols=87 Identities=16% Similarity=0.123 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec---------
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV--------- 105 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~--------- 105 (478)
....++++-++.++|.|..-+...+++.|.++++ ++..++++++.+.++|..+|+++.+++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 4567778999999999999999999999988765 4888999999999999999998877665422
Q ss_pred -------------cchhHhHHHHHHHHHHHHHHHh
Q 011747 106 -------------SWVIGFGIPTVLMIGAIILFLV 127 (478)
Q Consensus 106 -------------g~~~~F~i~~v~m~~~liifl~ 127 (478)
+|+.+|.+.++..++..+.++.
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3889999887766665554443
No 138
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.97 E-value=0.037 Score=57.27 Aligned_cols=110 Identities=9% Similarity=0.100 Sum_probs=79.5
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
++..+...+...+.+|+..++. +|+++ -+=+.+|+.+.+++.+..++.+ +.+++
T Consensus 47 g~~~s~~~~~~~l~~~~~g~l~----dr~G~-------r~~l~~~~~l~~~~~~~~~~a~---------------~~~~l 100 (393)
T PRK09705 47 ALLTALPVVTMGGLALAGSWLH----QHVSE-------RRSVAISLLLIAVGALMRELYP---------------QSALL 100 (393)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH----HHhCc-------hHHHHHHHHHHHHHHHHHHHCc---------------chHHH
Confidence 3344555556666666665543 44432 2346788888888887766542 34456
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+..-++.|+++....+...+.+.+..| +.|+.++|++......|..+++.+.....
T Consensus 101 l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 101 LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999988887 66899999999888888888888776543
No 139
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.97 E-value=0.04 Score=57.86 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS 393 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~ 393 (478)
+.+|.++.+++.+..+.... ...+.+.+....++.++++....+...+.+.+..|++.|+..+|++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~ 162 (438)
T TIGR00712 94 LPAGLILSAAVMLLMGFVPW-----------ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCA 162 (438)
T ss_pred hHHHHHHHHHHHHHHhcccc-----------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHH
Confidence 45677777776655443321 0123444556678899999988888889999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 011747 394 FGFASYLSSLLITI 407 (478)
Q Consensus 394 ~a~g~~l~~~l~~~ 407 (478)
..+|..+++.+...
T Consensus 163 ~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 163 HNIGGGIPPLLVLL 176 (438)
T ss_pred HHhHhHHHHHHHHH
Confidence 99998888766543
No 140
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=96.94 E-value=0.095 Score=52.90 Aligned_cols=109 Identities=11% Similarity=0.127 Sum_probs=73.2
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
+++.+...+..++..|+...+. .|.++ -+-+.+|.++.+++.+..+... .+.+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~ 94 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLV----DKFGP-------RYTTTLSLLLLAIPCLWAGLAV--------------QSYSVL 94 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHH----HHhCc-------hHHHHHHHHHHHHHHHHHHHHh--------------hhHHHH
Confidence 3455556666666666666543 45432 1235677777777766554432 145666
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITI 407 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~ 407 (478)
+...++++++.... +.....+.+..|++.|+..++++.....+|..+++.+...
T Consensus 95 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 95 LLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred HHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77788899987654 5578899999999999999999987666776666655543
No 141
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=96.92 E-value=0.068 Score=60.11 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=75.6
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
++.+...+..++..++..++ ..|.++ .+-+.+++++.+++.+..++. .+.++++
T Consensus 206 ~l~s~~~lG~iiG~li~G~L----sDR~GR-------R~~lii~lil~~i~~ll~afa---------------~s~~~ll 259 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGGL----ADKLGR-------KQCLLICLSVNGFFAFFSSFV---------------QGYGFFL 259 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHH---------------hhHHHHH
Confidence 34444555555555554443 345432 123455655555554443322 2456677
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
...++.|++.-...|....++....|++.|+..++++...+++|..++..++..+
T Consensus 260 v~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 260 FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999998887766443
No 142
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=96.90 E-value=0.081 Score=54.67 Aligned_cols=62 Identities=15% Similarity=0.026 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+.++++...++.+++..+..+.....+.+..|++.+...+++......+|..+++.+.+...
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677889999999888999999999999999988888887777777777777765543
No 143
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=96.89 E-value=0.028 Score=56.51 Aligned_cols=134 Identities=18% Similarity=0.155 Sum_probs=85.2
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
+..+...+...+..|+...+ .+|.++| +-+.+|.++.+++.+..++.. +.+.+.
T Consensus 42 ~~~s~~~~~~~~~~~~~G~l----~d~~G~r-------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 95 (377)
T TIGR00890 42 IWFTLLLIGLAMSMPVGGLL----ADKFGPR-------AVAMLGGILYGLGFTFYAIAD---------------SLAALY 95 (377)
T ss_pred HHHHHHHHHHHHHhhhhHHH----HHHcCcc-------chhHHhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 34445555555666665554 3455432 235667777777765554432 344556
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHH
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF 433 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~ 433 (478)
...++.|+++-...+.....+.+..|+ .|+.+++++....++|..+++.+.....+. .+| ...
T Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~----------~~~ 158 (377)
T TIGR00890 96 LTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL------EGV----------PAA 158 (377)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc------ccH----------HHH
Confidence 677899999998888888888887875 589999999999999988766555433211 122 345
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011747 434 YFLIAGLGGLNIVYFLY 450 (478)
Q Consensus 434 f~~la~l~~v~~vif~~ 450 (478)
|+..+++.++..+..+.
T Consensus 159 f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 159 FIYMGIIFLLVIVLGAF 175 (377)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665554443
No 144
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.88 E-value=0.017 Score=61.37 Aligned_cols=120 Identities=15% Similarity=0.182 Sum_probs=86.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHH
Q 011747 311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL 390 (478)
Q Consensus 311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~ 390 (478)
.+-|.+|+.+-++=|+....++ |+|..+|.-+++++.-.+++.+..+++...||++++..++|+.
T Consensus 436 v~v~~lgLa~~~~Rf~~~S~L~---------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~ 500 (618)
T KOG3762|consen 436 VNVMYLGLACNVGRFLYYSYLQ---------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLL 500 (618)
T ss_pred cceeeehhhHHHHHHHHHHHhc---------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHH
Confidence 4456788887777777665543 5666778889999999999999999999999999999999887
Q ss_pred HHH-hhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 011747 391 FCS-FGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGI 461 (478)
Q Consensus 391 ~l~-~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~ 461 (478)
-.. -++|.-+|+++++.+-.. + ....+|+..++.+++..++++.+.+..+++...
T Consensus 501 ~g~f~GlG~g~GslIGG~~v~~---------f-------g~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~i 556 (618)
T KOG3762|consen 501 QGIFHGLGKGLGSLIGGFVVER---------F-------GARTTFRIFGIACLVTLALFISIQLLLKRRGFI 556 (618)
T ss_pred HHHhcccCcchhhhhhhhhhee---------e-------hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence 644 355555555555443221 1 023467788888888888887776666655443
No 145
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.88 E-value=0.1 Score=54.56 Aligned_cols=113 Identities=10% Similarity=-0.007 Sum_probs=82.6
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
+++.+...+..++..|+..++. +|.++ -+-+.+|+++.+++.+....... ..+.+++
T Consensus 41 g~l~s~~~~g~~i~~~~~g~l~----~r~G~-------r~~~~~g~~l~~~g~~l~~~~~~------------~~~~~~~ 97 (410)
T TIGR00885 41 ALVQSAFYGGYFIMAIPAAIFM----KKLSY-------KAGILLGLFLYALGAFLFWPAAE------------IMNYTLF 97 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhCc-------hHHHHHHHHHHHHHHHHHHHHHh------------hccHHHH
Confidence 3455566666667776665543 55432 23467788887777655432211 1355667
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
+...++.|+|.-+..+....++.+.+|++.++..+++.....++|..+++.+...+
T Consensus 98 l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 98 LVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999999999999999999999999999999999999998887655
No 146
>PRK03893 putative sialic acid transporter; Provisional
Probab=96.85 E-value=0.091 Score=55.75 Aligned_cols=81 Identities=14% Similarity=0.304 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS 393 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~ 393 (478)
+.++.++.+++.+..++. -+.++++...++.|++.....+.....+.+..|++.|+..+|++...
T Consensus 88 ~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 152 (496)
T PRK03893 88 MVISIVLFSVGTLACGFA---------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISG 152 (496)
T ss_pred HHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 456666666666554432 24566777889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhh
Q 011747 394 FGFASYLSSLLITIVH 409 (478)
Q Consensus 394 ~a~g~~l~~~l~~~~~ 409 (478)
..+|..+++.+...+.
T Consensus 153 ~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 153 FSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988887554
No 147
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.82 E-value=0.16 Score=54.35 Aligned_cols=107 Identities=14% Similarity=0.246 Sum_probs=76.8
Q ss_pred HHhHHHHHHHhhhcCCCCCCCchhh-hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHh
Q 011747 289 FYDTVLVPALRKITKHEGGITLLQR-IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNI 367 (478)
Q Consensus 289 l~~~i~~p~~~r~~~~~~~~s~l~k-i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~ 367 (478)
+...+|-|+..|++.. .....++ +.++.++.+++....++... ..+.+|+...+++.+++-....
T Consensus 60 ~~~~l~gpl~Dr~~~~--~~Grrr~~ll~~~i~~~~~~~~~a~~~~------------~~~l~~l~~~~~l~~~~~a~~~ 125 (491)
T PRK11010 60 VFKFLWSPLMDRYTPP--FLGRRRGWLLATQLLLLVAIAAMGFLEP------------GTQLRWLAALAVVIAFCSASQD 125 (491)
T ss_pred HHHHHHHHHHHccccc--CCCCchHHHHHHHHHHHHHHHHHHHcCC------------cchHHHHHHHHHHHHHHHHHHH
Confidence 4556677777765311 0111122 45666666666655544321 2457778888899999999999
Q ss_pred hhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 368 IGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 368 ~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+..-+++.+..|++.|+..+|+......+|..+++.+...+.
T Consensus 126 i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 126 IVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987776554
No 148
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.81 E-value=0.18 Score=52.69 Aligned_cols=89 Identities=8% Similarity=0.079 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHH-HHHhhHHHHHHHHHHHHhhcccccCCCCcccccCC
Q 011747 347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL-FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDI 425 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~-~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~l 425 (478)
.+++|+++.=.+.++---+.-...+-+++++.|+++.++...+. .++.++|..+.+.+.+...+. +
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~-------------~ 376 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR-------------I 376 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-------------H
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh-------------c
Confidence 56778888779999888899999999999999999998888885 477888888777666655431 0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHh
Q 011747 426 DAGRLDYFYFLIAGLGGLNIVYFLYC 451 (478)
Q Consensus 426 n~~~~~~~f~~la~l~~v~~vif~~~ 451 (478)
| ....|+.++++.++.+++=+..
T Consensus 377 --G-~~~tylimg~iv~~~~li~~f~ 399 (412)
T PF01306_consen 377 --G-FQHTYLIMGLIVLPFTLISAFT 399 (412)
T ss_dssp --H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --C-cHHHHHHHHHHHHHHHHHheee
Confidence 1 2235677777766555544433
No 149
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=96.80 E-value=0.1 Score=54.54 Aligned_cols=92 Identities=13% Similarity=0.215 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH-hhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcch
Q 011747 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS-FGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRL 430 (478)
Q Consensus 352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~-~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~ 430 (478)
++..-+++|+.-.+..+++..++.+.+|++.|+..||++... .++|..+|..+++...+.-. .+.. -..
T Consensus 304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g--------~~~~--~~~ 373 (400)
T PF03825_consen 304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG--------ARGM--FDW 373 (400)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc--------chhh--hhH
Confidence 333346899999999999999999999999999999998854 68888888888876553210 0000 012
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 011747 431 DYFYFLIAGLGGLNIVYFLYCAR 453 (478)
Q Consensus 431 ~~~f~~la~l~~v~~vif~~~~~ 453 (478)
..+|.+.+++.++..++|++..|
T Consensus 374 ~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 374 SAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34666777777777777777643
No 150
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.78 E-value=0.042 Score=58.17 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=79.9
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747 275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP 354 (478)
Q Consensus 275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~ 354 (478)
..++..+...+..|+..+ +..|+++| +-+.+|+++.+++.+..+... +.+.+..
T Consensus 59 ~~s~~~~~~~~~~~~~G~----l~dr~g~r-------~~l~~~~~~~~~~~~~~~~~~---------------~~~~l~~ 112 (455)
T TIGR00892 59 ISSIMLAVLYAGGPISSI----LVNRFGCR-------PVVIAGGLLASLGMILASFSS---------------NVIELYL 112 (455)
T ss_pred HHHHHHHHHHHhhHHHHH----HHHHcCch-------HHHHhhHHHHHHHHHHHHHhh---------------hHHHHHH
Confidence 334444444555565443 34555321 234556666666655443321 2222322
Q ss_pred H-HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHH
Q 011747 355 Q-LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF 433 (478)
Q Consensus 355 ~-y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~ 433 (478)
. -++.|+++....+.....+.+..| +.|+..+|++.....+|..+++.+.+.+.+.. +| ..-
T Consensus 113 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gw----------r~~ 175 (455)
T TIGR00892 113 TAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GW----------RGS 175 (455)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------Ch----------HHH
Confidence 2 367788888776777777777676 68999999999999999998888776554311 23 345
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011747 434 YFLIAGLGGLNIVYFLYC 451 (478)
Q Consensus 434 f~~la~l~~v~~vif~~~ 451 (478)
|+..+++.++..+..+.+
T Consensus 176 f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 176 FLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666777666655544433
No 151
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=96.77 E-value=0.059 Score=53.37 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=81.7
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
+..+...+..++..|+...+. +|.++| +-+.+|.++.+++.+..... -+.++.+
T Consensus 38 ~~~~~~~~~~~~~~~~~g~~~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 91 (352)
T cd06174 38 LIVSAFSLGYALGSLLAGYLS----DRFGRR-------RVLLLGLLLFALGSLLLAFA---------------SSLWLLL 91 (352)
T ss_pred HHHHHHHHHHHHHHHhHHHHH----HHhCCc-------hhhHHHHHHHHHHHHHHHHh---------------ccHHHHH
Confidence 345555555666666665543 454321 13566777777766654433 2456677
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~ 410 (478)
...++.+++.-+..+....+..+..|++.|+..+|+......+|..+++.+.+.+.+
T Consensus 92 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 92 VGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred HHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999888876543
No 152
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0024 Score=69.50 Aligned_cols=213 Identities=20% Similarity=0.111 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHH
Q 011747 39 LVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLM 118 (478)
Q Consensus 39 ~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m 118 (478)
.|+...+..-+ +..++|++++.|+++.... ....+..+|...|+.||+++++..+. .|+++...+
T Consensus 62 ~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l--~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~a~ 126 (571)
T KOG1237|consen 62 TYLTLELHASG-GGAANNVNAFGGTQFLLPL--LGAFLADSFLGRYFTINIGSLISLLG------------LFGLTLSAM 126 (571)
T ss_pred HHHHHHhccch-HHHHHHHHHHhhHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 34444444555 8899999999999998632 12357888999999999999987644 677888877
Q ss_pred HHHHHHHHhcccceeeeC-CCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhhhhh
Q 011747 119 IGAIILFLVGKKLYVLVE-PEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAA 197 (478)
Q Consensus 119 ~~~liifl~g~~~~~~~~-p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 197 (478)
+.++..+-+ .+.... ...+|-+....++..++......... .++ .+++..+
T Consensus 127 ~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg--~r~-----------------------~~~~fGa 178 (571)
T KOG1237|consen 127 IPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGG--IRP-----------------------CLLAFGA 178 (571)
T ss_pred hhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCC--CCC-----------------------cchhhcc
Confidence 777766544 111111 11122222333344444332110000 000 1111111
Q ss_pred hhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhcc-CCCCCcccCCcccc
Q 011747 198 MIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNR-HLGPKFQIPPGTVG 276 (478)
Q Consensus 198 ~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~-~~~~g~~ip~~~~~ 276 (478)
-. +++...++++. ....+.|..++|..+.++.|+..++. +.. +|.+-.+..+
T Consensus 179 dQ------------------fd~~~~~~~~~--------~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~ 231 (571)
T KOG1237|consen 179 DQ------------------FDELDPVEVKG--------IPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPT 231 (571)
T ss_pred cc------------------cCccCcchhhC--------cccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHH
Confidence 00 01111111211 22456888999999999999865553 333 7888899999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHH
Q 011747 277 VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLV 331 (478)
Q Consensus 277 ~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~ 331 (478)
..|.+.+++|.|....+.++. | +--.+..+|-++.+++.-..+.+
T Consensus 232 ~~~~lai~iF~~g~~~y~~~~-------p---~gsp~t~i~~Vlvaa~~k~~~~~ 276 (571)
T KOG1237|consen 232 VLNALAILIFLPGFPFYRYKK-------P---RGSPKTRIGQVLVAAAFKRKAVV 276 (571)
T ss_pred HHHHHHHHHHHcCceeEEeeC-------C---CCCchhHHHHHHHHHHHHHhccC
Confidence 999999999998776654331 1 22268888999988888765433
No 153
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=96.71 E-value=0.043 Score=57.90 Aligned_cols=119 Identities=10% Similarity=0.029 Sum_probs=76.4
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747 276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ 355 (478)
Q Consensus 276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~ 355 (478)
.+...+..++.+++..++ ..|+++| +-+.++.++.+++.+..+..+...... ..+ +.-.+++++..
T Consensus 61 ~s~~~ig~~~~~~~~G~l----~dr~Grr-------~~~~~~~~l~~i~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~~ 126 (479)
T PRK10077 61 VASALIGCIIGGALGGYC----SNRFGRR-------DSLKIAAVLFFISALGSAWPEFGFTSI--GPD-NTGYVPEFVIY 126 (479)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhccH-------HHHHHHHHHHHHHHHHHHhhccccccc--ccc-chhHHHHHHHH
Confidence 334444555555555543 3455321 234566666666655554432111000 000 11234456677
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
-++.|++.-...|.+..++.+..|++.|+..+|++.....+|..++..+....
T Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred HHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999988877665444
No 154
>TIGR00898 2A0119 cation transport protein.
Probab=96.70 E-value=0.016 Score=61.74 Aligned_cols=133 Identities=10% Similarity=0.145 Sum_probs=89.7
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
++.+++..+..++..++...+- .|.+++ +=+.++.++.+++.+..++. -+.+++
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l~----Dr~Grr-------~~~~~~~~~~~i~~~~~~~~---------------~~~~~~ 183 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYLS----DRFGRK-------KVLLLSTLVTAVSGVLTAFS---------------PNYTVF 183 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHhh----hhccch-------HHHHHHHHHHHHHHHHHHHc---------------ccHHHH
Confidence 3455666666666666665543 454321 12445555555554443322 356677
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHH
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY 432 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~ 432 (478)
+...++.|++.-...+....++.+..|++.|+..++++....++|..+++.+..++. +| .+
T Consensus 184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w----------r~ 244 (505)
T TIGR00898 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DW----------RW 244 (505)
T ss_pred HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HH----------HH
Confidence 788899999999999999999999999999999999999999999888887765443 13 23
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011747 433 FYFLIAGLGGLNIVYFLY 450 (478)
Q Consensus 433 ~f~~la~l~~v~~vif~~ 450 (478)
.|+..++.+++..+.++.
T Consensus 245 ~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 245 LQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555666666555554433
No 155
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.69 E-value=0.086 Score=54.28 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCC
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDA 427 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~ 427 (478)
+.++++..-++.|++|-. .+.....+.+..|++.|+..+|++.....+|..++..++..+.+. .+|
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW------- 143 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL------- 143 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch-------
Confidence 677888889999999986 456666778899999999999999999999999998888766532 135
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 011747 428 GRLDYFYFLIAGLGGLNIVYFLY 450 (478)
Q Consensus 428 ~~~~~~f~~la~l~~v~~vif~~ 450 (478)
...|...++++++..++.+.
T Consensus 144 ---r~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 144 ---QLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH
Confidence 23556666766665554443
No 156
>PRK10489 enterobactin exporter EntS; Provisional
Probab=96.68 E-value=0.069 Score=55.45 Aligned_cols=116 Identities=11% Similarity=-0.000 Sum_probs=79.3
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
++..+...+..++..|+..++. .|++++ +-+.++.++.+++++..++.... ...+.+++
T Consensus 55 g~~~~~~~l~~~~~~~~~G~l~----dr~g~~-------~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l 113 (417)
T PRK10489 55 GLSVTLTGGAMFIGLMVGGVLA----DRYDRK-------KLILLARGTCGLGFIGLALNAFL----------PEPSLLAI 113 (417)
T ss_pred HHHHHHHHHHHHHHHHhhHHHh----hhcCCc-------eEEEehHHHHHHHHHHHHHHHHc----------CCCcHHHH
Confidence 4455566666666666655543 444321 22445666666666554432210 01345666
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
....++.+++..+..+.....+.+..|++.++..+|++....++|..+|+.+++.+.
T Consensus 114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 677788899998888989999999999999999999999888999988888876554
No 157
>PRK12382 putative transporter; Provisional
Probab=96.64 E-value=0.078 Score=54.44 Aligned_cols=118 Identities=13% Similarity=-0.024 Sum_probs=78.7
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
+..+...+...+..|+..++. .|+++ -+-+.+|.+..+++.+........ .. ....+.++++
T Consensus 55 ~~~s~~~~~~~i~~~~~G~l~----Dr~g~-------r~~l~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~l~ 116 (392)
T PRK12382 55 IAVGIQFLATVLTRGYAGRLA----DQYGA-------KRSALQGMLACGLAGLAYLLAAIL------PV-SAPFKFALLV 116 (392)
T ss_pred HHHHHHHHHHHHHhhhhhHHH----Hhhcc-------hHHHHHHHHHHHHHHHHHHhhhcc------cc-chhHHHHHHH
Confidence 344555566666777766654 45432 123455655555544322211110 00 0023567777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
..-+++|+++....+...+.+.+..|++.|+..+|.+......|..+++.++....
T Consensus 117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 117 VGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999998888888888888876554
No 158
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=96.62 E-value=0.13 Score=55.13 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS 393 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~ 393 (478)
+.+++++.+++.+..+.... .....+.++++...++.|+++-...+....+....+|++.|+..++++...
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~ 159 (502)
T TIGR00887 89 YGMELIIMIIATVASGLSPG---------SSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAM 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHccC---------cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 45566666665554443221 001134567888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh
Q 011747 394 FGFASYLSSLLITIV 408 (478)
Q Consensus 394 ~a~g~~l~~~l~~~~ 408 (478)
..+|..+++.+...+
T Consensus 160 ~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 160 QGFGILAGAIVALIV 174 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888777544
No 159
>PRK10133 L-fucose transporter; Provisional
Probab=96.62 E-value=0.26 Score=51.88 Aligned_cols=111 Identities=8% Similarity=-0.018 Sum_probs=77.3
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747 275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP 354 (478)
Q Consensus 275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~ 354 (478)
+.+...+...+.+|+...+ .+|++. -+-+.+|+++.+++.+....... .-+.++++.
T Consensus 66 ~~~~~~~g~~i~~~~~g~l----~dr~G~-------r~~l~~g~~~~~~~~~l~~~~~~------------a~~~~~ll~ 122 (438)
T PRK10133 66 IQSAFYFGYFIIPIPAGIL----MKKLSY-------KAGIITGLFLYALGAALFWPAAE------------IMNYTLFLV 122 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHHHh------------cCCHHHHHH
Confidence 3344455566666655543 355532 23456777777777654321111 135667778
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
..+++|+|.-...+....++.+.+|++.+...++++...+++|..++..++...
T Consensus 123 ~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999988888887788888888888888888777543
No 160
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=1.2 Score=47.08 Aligned_cols=173 Identities=17% Similarity=0.120 Sum_probs=102.7
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhh--hccC-C-CCcchH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRAS--AHLH-P-MSQVSV 349 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~--~~~~-g-~~~~s~ 349 (478)
-+..++.+.+-+..-+....+.++.||.++ +..-.-+.+|.++..++++..-+.-- .... .+++ + .-.-+.
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~~p-~dap~~~t~~~~~~~~~~~ 353 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLSFP-NDAPLRPTDSPPLLFTPSY 353 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhcccc-ccCCCCCCcccccccccch
Confidence 355666666666655544444444444322 22333456666666555543322110 0000 0000 0 111223
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcc
Q 011747 350 FWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGR 429 (478)
Q Consensus 350 ~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~ 429 (478)
.--...++++|+++.+....-+.......|+ -+..+-+++-+..++++.++.+..... .
T Consensus 354 ~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~-~~~~~fsi~kfyq~~~s~v~~f~~~~~--------------------~ 412 (461)
T KOG3098|consen 354 YLALIIGFLLGFGDACFNTQRYVIIALLYPD-DRAQAFSLFKFYQSVASCVAFFFSPYL--------------------L 412 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhhhhhhh--------------------H
Confidence 3344567999999999999999999999944 456777777788888887655443211 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcccccCcccc
Q 011747 430 LDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLEL 472 (478)
Q Consensus 430 ~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~~~~~~~~~~ 472 (478)
+..+...+.++.....++++.++++++..+++...+++++.+.
T Consensus 413 l~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 455 (461)
T KOG3098|consen 413 LYIYTLGLPIFCVIATTIFFIVAERTQAMEKKLTEEKESKEKR 455 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 3446667888899999999999999987777655555554443
No 161
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.58 E-value=0.051 Score=57.99 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChh---hHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH---MKSIANSL 389 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~---~ks~~~gl 389 (478)
-+.+|+++.+++++..++. .+.++++...++.++|+-+..|....++.++.|++ .|+...++
T Consensus 81 ~l~~~~~~~~~g~~~~~~~---------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~ 145 (475)
T TIGR00924 81 TMVLGGIVLMLGHFMLAMS---------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTL 145 (475)
T ss_pred HHHHHHHHHHHHHHHHHhc---------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehh
Confidence 4677777777777655432 12344556677899999999999999999988865 37889999
Q ss_pred HHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011747 390 LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYR 456 (478)
Q Consensus 390 ~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~ 456 (478)
++....+|..+|+.+++.+.+.. +| ..-|...++.++++.++++...+.++
T Consensus 146 ~~~~~niG~~ig~~l~g~l~~~~------g~----------~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 146 FYMSINIGSFISPLLAGVIAENY------GY----------HVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------Ch----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence 99999999999998887665311 12 34455556666666666666665554
No 162
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=96.55 E-value=0.0015 Score=67.44 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHH
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT 115 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~ 115 (478)
...+.++..+.++|.|..-|.......|.++++ ++.+++++++...++|..+++.+.+++.+..||+..|.+.+
T Consensus 302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 375 (399)
T PRK05122 302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA 375 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 344556667788888877777777676655432 58899999999999999888888888888889999999988
Q ss_pred HHHHHHHHHHHhcccce
Q 011747 116 VLMIGAIILFLVGKKLY 132 (478)
Q Consensus 116 v~m~~~liifl~g~~~~ 132 (478)
+..+++++..+..+++.
T Consensus 376 ~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 376 LAALLGLALTWLLYRRA 392 (399)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 88888777665544433
No 163
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.55 E-value=0.099 Score=52.84 Aligned_cols=83 Identities=12% Similarity=0.150 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHh
Q 011747 315 GIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSF 394 (478)
Q Consensus 315 ~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~ 394 (478)
.++.++.+++++..++... ..+.+++...+++.+++-.+..+...+++.+..|++.|+...|+.....
T Consensus 61 ~~~~~~~~~~~~~l~~~~~------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~ 128 (356)
T TIGR00901 61 VLTQVLLLSLLLILSFLVP------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGY 128 (356)
T ss_pred HHHHHHHHHHHHHHHcCCc------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHH
Confidence 4566666666554443321 2456667777788888888889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhh
Q 011747 395 GFASYLSSLLITIVH 409 (478)
Q Consensus 395 a~g~~l~~~l~~~~~ 409 (478)
.+|..+++.++....
T Consensus 129 ~~G~~~~~~l~~~l~ 143 (356)
T TIGR00901 129 RAGMLLSGSLALVLA 143 (356)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988876554
No 164
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=96.55 E-value=0.0023 Score=54.41 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.+.+...+.+++.|..-+...+...|.++++ +|.+..++.+...++|..+++.+.+++.+..||+..|.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 3455666778888888888888889999988765 4788899999999999999999999888888999999988
Q ss_pred HHHHHHHHHHHH
Q 011747 115 TVLMIGAIILFL 126 (478)
Q Consensus 115 ~v~m~~~liifl 126 (478)
++..+++.+...
T Consensus 124 ~~~~~~~~~~~~ 135 (141)
T TIGR00880 124 AILALAAFILLA 135 (141)
T ss_pred HHHHHHHHHHHh
Confidence 777766665544
No 165
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.48 E-value=0.12 Score=55.77 Aligned_cols=112 Identities=17% Similarity=0.129 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHH
Q 011747 311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL 390 (478)
Q Consensus 311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~ 390 (478)
..-+.++++..+++.++..+.. +.+-++..-++.|+..-...........+..+...-+-..|+-
T Consensus 365 ~~~~~~~ll~~gl~~~~~p~~~---------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~ 429 (509)
T KOG2504|consen 365 LVLFLLTLLIAGLARLFLPFAT---------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLL 429 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHH
Confidence 3445666666666664443321 2233444556677777666666666777777777778899999
Q ss_pred HHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 011747 391 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 452 (478)
Q Consensus 391 ~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~ 452 (478)
.+..+++..+|+.+.+.+.+.+ +.++..|...++..+++++.+++..
T Consensus 430 l~~~gi~~l~gpPiag~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 430 LLFQGIGALVGPPIAGLLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHhHHHHHcCcccceeeeecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999998887655433 1134556677777777777777666
No 166
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.47 E-value=0.24 Score=50.87 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=72.0
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747 276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ 355 (478)
Q Consensus 276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~ 355 (478)
.+...+..++..|+...+ ..|.++ -+-+.+|+++.+++.+..... -+.++++..
T Consensus 49 ~~~~~~~~~~~~~~~G~l----~Dr~gr-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~ 102 (394)
T PRK11652 49 MAAYLLTYGLSQLFYGPL----SDRVGR-------RPVILVGMSIFILGTLVALFA---------------HSLTVLIAA 102 (394)
T ss_pred HHHHHHHHHHHHHhhhhH----HHhcCC-------hHHHHHHHHHHHHHHHHHHHH---------------ccHHHHHHH
Confidence 344444455555555443 345432 122455666666655443321 235566677
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
.++.+++.....+...++..+..|++.++..++.+.....++..+++.+.+...
T Consensus 103 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 103 SAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899888888888888888889889999999998888888888887776554
No 167
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.38 E-value=0.46 Score=52.04 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i 113 (478)
.+...+..|.++.++|.|... .....++|..+.+ .|..++.+..+..=+...+++.+...+..+.+||+.|.+
T Consensus 129 ~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~ 201 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYI 201 (599)
T ss_pred CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHH
Confidence 345568889999999988865 4455678877532 233333333322222222233333233345699999999
Q ss_pred HHHHHHHHHHHHHh
Q 011747 114 PTVLMIGAIILFLV 127 (478)
Q Consensus 114 ~~v~m~~~liifl~ 127 (478)
.++...++++...+
T Consensus 202 ~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 202 FIIWSGIALVLIFF 215 (599)
T ss_pred HHHHHHHHHHHHHH
Confidence 98888887766543
No 168
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.37 E-value=0.21 Score=51.61 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS 393 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~ 393 (478)
+.++.++.+++++..++... ..+.|++...+++.++......|..-+++.+..|++.|+.+.++....
T Consensus 71 l~~~~~~~~l~~~~l~~~~~------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g 138 (402)
T PRK11902 71 LLLTQVGLAASIAAMAFCPP------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLG 138 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCc------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHH
Confidence 56666777666665544321 135666777778888899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhh
Q 011747 394 FGFASYLSSLLITIVH 409 (478)
Q Consensus 394 ~a~g~~l~~~l~~~~~ 409 (478)
.++|..+++.+...+.
T Consensus 139 ~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 139 YRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 9999999888776553
No 169
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.29 E-value=0.15 Score=51.60 Aligned_cols=90 Identities=10% Similarity=-0.040 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHH--HHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCC
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA--NSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDI 425 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~--~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~l 425 (478)
+.++++..-++++.++....|...+...+..|++.|+.. .+......++|..+++.+++...+. -+|
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~------~~~----- 154 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG------FGF----- 154 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh------ccc-----
Confidence 344455555677777777788888888888887766643 5666666778888887777655321 022
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 011747 426 DAGRLDYFYFLIAGLGGLNIVYFLYCAR 453 (478)
Q Consensus 426 n~~~~~~~f~~la~l~~v~~vif~~~~~ 453 (478)
...|+..+++.++..++.+...+
T Consensus 155 -----~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 155 -----TVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 23455666665555554444333
No 170
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.66 Score=47.37 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeec-cchhHhHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGI 113 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~-g~~~~F~i 113 (478)
+...++.|..++++|.+....-+.+++-+-|++ +....-..|-.+.++|+.+++.+++.+.++. ||+.+.+.
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-------~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-------RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-------chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 567788888888888888777777877776664 3566778889999999999998888888776 79999888
Q ss_pred HHHHHHHHHHHHH
Q 011747 114 PTVLMIGAIILFL 126 (478)
Q Consensus 114 ~~v~m~~~liifl 126 (478)
=++--++++++.+
T Consensus 171 WAl~allAl~~Wl 183 (395)
T COG2807 171 WALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
No 171
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.29 E-value=0.13 Score=60.74 Aligned_cols=62 Identities=16% Similarity=0.047 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+.++++...+++|++..+..|+..+++.+..|++.|+.++|+.....++|..+|+.+++++.
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788899999999999999999999999999999999999999999999988887654
No 172
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.22 E-value=0.31 Score=50.44 Aligned_cols=112 Identities=9% Similarity=0.008 Sum_probs=72.1
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
+..+...+...+..|+...+. .|.++ -+-+.+|.++.+++.+....... ...+.+.++
T Consensus 52 ~~~~~~~~~~~i~~~~~g~l~----dr~g~-------k~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~ 109 (402)
T TIGR00897 52 SAFTLYGIAAAISAWISGVVA----EIIGP-------LKTMMIGLLLWCVGHAAFIVFGL-----------GHANYPLIL 109 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCc-------HHHHHHHHHHHHHHHHHHHHHhc-----------cCccHHHHH
Confidence 344455555566666665543 44421 22345677766666543322111 012445556
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHH-HHHHHHHHH
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFAS-YLSSLLITI 407 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~-~l~~~l~~~ 407 (478)
..+++.|++.....+.....+.+..|++.|+..+|++....++|. .+++.+.+.
T Consensus 110 ~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 110 LFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred HHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888999887778778888889999999999999999988886 466666543
No 173
>PRK11043 putative transporter; Provisional
Probab=96.19 E-value=0.46 Score=48.90 Aligned_cols=108 Identities=9% Similarity=-0.005 Sum_probs=70.3
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHH
Q 011747 276 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ 355 (478)
Q Consensus 276 ~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~ 355 (478)
.++..+...+..++... +..|.++ -+-+.+|.++.+++.+..+.. .+.++++..
T Consensus 47 ~s~~~~~~~~~~~~~g~----l~dr~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~ 100 (401)
T PRK11043 47 LSLFLAGFALGQLLWGP----LSDRYGR-------KPVLLAGLSLFALGSLGMLWV---------------ESAAQLLVL 100 (401)
T ss_pred HHHHHHHHHHHHHhhhh----HHhhcCC-------cHHHHHHHHHHHHHHHHHHHh---------------cCHHHHHHH
Confidence 33444444445554444 3355432 123555666666555443322 245666677
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
.++.|++.....+...+.+.+..|++.++...+......++|..+++.+++...
T Consensus 101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899888888888888899999998888888887777788888777776554
No 174
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.18 E-value=0.21 Score=51.64 Aligned_cols=108 Identities=14% Similarity=0.052 Sum_probs=76.9
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
+++.+...+...++.|+...+. .|+++| +-+.++.++.+++.+..+... +.
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~la----Dr~grr-------~vl~~~~~~~~~~~~~~~~~~---------------~~--- 91 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFA----DSFPKG-------RVMFIANGIKLLGCLLMLFGI---------------HP--- 91 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhh----hccCCc-------hhhHHHHHHHHHHHHHHHHHH---------------HH---
Confidence 4555666667777778777543 555432 224555555555443322211 11
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+...+++|+++.+..|+..+.+.+..|++.++..+|++.....+|..+|+.+++...
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999999999999999988887664
No 175
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.16 E-value=0.14 Score=54.58 Aligned_cols=129 Identities=9% Similarity=0.050 Sum_probs=72.8
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhh-c-cCCCCcchHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASA-H-LHPMSQVSVFW 351 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~-~-~~g~~~~s~~w 351 (478)
......++.-++.+|+...+--..-.|.+++ ++. +..|.+...++++..+.......... . +++......++
T Consensus 43 ~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~--il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~ 116 (477)
T TIGR01301 43 IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPF--IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIV 116 (477)
T ss_pred HHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHH--HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHH
Confidence 3455666677777777666543211133321 111 34456666666666554332100000 0 00111122234
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhH--HHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMK--SIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~k--s~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
.+..+.++.++--...+..-+++.+..|++.| +...+......++|+.++..+++..
T Consensus 117 ~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 117 FVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555666678999999999876 5788888888899999998888653
No 176
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.06 E-value=1.4 Score=47.13 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=63.2
Q ss_pred HhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHH
Q 011747 366 NIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNI 445 (478)
Q Consensus 366 ~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~ 445 (478)
..|+..=+...+.|++.|+.+++.-.+..-..+++-+.....+++.- -.++|...++.+++.+
T Consensus 385 ~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~-----------------g~~~filF~i~~~~~~ 447 (485)
T KOG0569|consen 385 PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI-----------------GPYVFILFVIPLAIFL 447 (485)
T ss_pred CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------cchhhHHHHHHHHHHH
Confidence 46777777899999999999999988888888887776665554321 1367888888888888
Q ss_pred HHHHHhhhccccccCCCcccc
Q 011747 446 VYFLYCARRYRYKSGIQSLED 466 (478)
Q Consensus 446 vif~~~~~~~~~~~~~~~~~~ 466 (478)
+..+...+--|.|+.++..++
T Consensus 448 i~~~~~lPETkgr~~~eI~~~ 468 (485)
T KOG0569|consen 448 IYLYRYLPETKGRTPYEIIEE 468 (485)
T ss_pred HHHHHhCcccCCCCHHHHHHH
Confidence 888777777777776655444
No 177
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.02 E-value=0.51 Score=48.88 Aligned_cols=92 Identities=11% Similarity=0.063 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHH---HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW---LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL 389 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~w---lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl 389 (478)
=|-.|+++.+.+...+...-....... ++. ..-+..| ....|++.|+|=-.....++++..+.+|++-|+...++
T Consensus 52 yI~~G~~~~~~g~~~ap~a~~~l~~~~-~~~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~i 129 (403)
T PF03209_consen 52 YIWGGTLLQAGGLAIAPFALLLLAESG-QQS-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAI 129 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccc-ccc-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHH
Confidence 366777777777665554432111000 011 1122333 44688999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHH
Q 011747 390 LFCSFGFASYLSSLLIT 406 (478)
Q Consensus 390 ~~l~~a~g~~l~~~l~~ 406 (478)
-+.+.=+|-.++..+.+
T Consensus 130 vw~Mli~G~iv~ai~~g 146 (403)
T PF03209_consen 130 VWVMLIVGIIVSAIVFG 146 (403)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888888877765
No 178
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.49 Score=49.04 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc---chhHhHHH
Q 011747 38 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS---WVIGFGIP 114 (478)
Q Consensus 38 ~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g---~~~~F~i~ 114 (478)
-+.+.=.++++|.|-| +.--+....-|+++ ++-.+..++= .-|+|+.+..++.|.+....| |+.+-.+.
T Consensus 107 ~ll~~gll~G~~GasF-av~m~~~s~~fP~~------~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~ 178 (417)
T COG2223 107 QLLVIGLLLGLAGASF-AVGMPNASFFFPKE------KQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIY 178 (417)
T ss_pred HHHHHHHHHhccccee-hcccccccccCChh------hhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333334455555544 33345666778765 3667777777 889999999999999988888 99999999
Q ss_pred HHHHHHHHHHHHhccc
Q 011747 115 TVLMIGAIILFLVGKK 130 (478)
Q Consensus 115 ~v~m~~~liifl~g~~ 130 (478)
.+.++++.+.++.+.+
T Consensus 179 ~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 179 VVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999998888877644
No 179
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=95.93 E-value=1.2 Score=47.47 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhcee
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL 98 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~ 98 (478)
.+...+++.-++.++| |..-+.....+.+.|+++ +|..+..++...-|+|..++..+.
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHHHHHHHhhHHHHHHHHH
Confidence 3566777777788888 445577778888888754 478888888777778876555443
No 180
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=95.85 E-value=0.25 Score=53.01 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=65.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChh--hHHHHHH
Q 011747 311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH--MKSIANS 388 (478)
Q Consensus 311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~--~ks~~~g 388 (478)
-+-+.+|.++.+++.+..++... ... -++...+++++|+-+..|....++.++-|++ .|+...+
T Consensus 81 r~~~~~g~~~~~~g~~~~~~~~~------------~~~--ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~ 146 (489)
T PRK10207 81 KRTIVLGAIVLAIGYFMTGMSLL------------KPD--LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFT 146 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc------------chh--HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchh
Confidence 34567888888887766654321 011 1335678889999999999999999999876 4577899
Q ss_pred HHHHHhhHHHHHHHHHHHHhhc
Q 011747 389 LLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 389 l~~l~~a~g~~l~~~l~~~~~~ 410 (478)
++++...+|..+++.+++.+.+
T Consensus 147 ~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 147 LFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877653
No 181
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=95.84 E-value=0.16 Score=52.69 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=73.1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHH
Q 011747 308 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN 387 (478)
Q Consensus 308 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~ 387 (478)
.+|-+=|++|++++++.++..++. .|.+.++..+++.|.-+-...|.....++.--|++.||...
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs---------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~ 155 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFS---------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWW 155 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceE
Confidence 355666899999999999887754 25666778889999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 011747 388 SLLFCSFGFASYLSSLLIT 406 (478)
Q Consensus 388 gl~~l~~a~g~~l~~~l~~ 406 (478)
|+|..+..+|..+.+.+..
T Consensus 156 siWn~shNiGGal~~~~~~ 174 (448)
T COG2271 156 SIWNTSHNIGGALAPLVAL 174 (448)
T ss_pred EEehhhhhcccchHHHHHH
Confidence 9999999999999888873
No 182
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=95.83 E-value=0.42 Score=56.56 Aligned_cols=64 Identities=20% Similarity=0.078 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747 347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~ 410 (478)
.|.++++..-+++|+++.+..|+..+.+.+..|++.++..+|+.....++|..+|+.+++++..
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677888899999999999999999999999999999999999999999999999999887653
No 183
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=95.76 E-value=0.46 Score=51.07 Aligned_cols=116 Identities=12% Similarity=0.143 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhh--HHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHM--KSIANSLL 390 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~--ks~~~gl~ 390 (478)
-+.+|.++.+++.+..++.. .+.+++....++.+++.-+..|....++.++.|++. ++..++++
T Consensus 90 ~~~~g~~~~~ig~~l~~~~~--------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~ 155 (500)
T PRK09584 90 VIMLGAIVLAIGYALVAWSG--------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMY 155 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhc--------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHH
Confidence 46677777777765544321 122334456788899999888988899999887543 34578888
Q ss_pred HHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011747 391 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 458 (478)
Q Consensus 391 ~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~ 458 (478)
+....+|..+++.+.+.+.+.. +| .+-|+..++.+++..+.++...++++.+
T Consensus 156 ~~~~~iG~~~gp~i~g~l~~~~------g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~~ 207 (500)
T PRK09584 156 YMSINIGSFFSMLATPWLAAKY------GW----------SVAFALSVVGMLITVVNFAFCQRWVKQY 207 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh------CH----------HHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence 9999999999988887664310 12 3445556666666666666666555543
No 184
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=95.76 E-value=0.52 Score=49.27 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=74.2
Q ss_pred HHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHh
Q 011747 288 PFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNI 367 (478)
Q Consensus 288 Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~ 367 (478)
|+-..++-++..|+++ -+-+.+++++.+++.+..++...... -+ ..++.+++..-+++|++|-...
T Consensus 77 ~ig~~~~G~l~Dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~l~~~R~l~G~g~g~~~ 142 (432)
T PRK10406 77 PIGGWLFGRIADKHGR-------KKSMLISVCMMCFGSLVIACLPGYET-----IG--TWAPALLLLARLFQGLSVGGEY 142 (432)
T ss_pred HHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHhhcCCchh-----HH--HHHHHHHHHHHHHHHhhhhhhH
Confidence 4444444445566643 23456777777777666554431100 00 1245567778899999999999
Q ss_pred hhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 368 IGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 368 ~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
|.+..++.+.+|++.|+..++++......|..++..+...+
T Consensus 143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888777665444
No 185
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=95.62 E-value=0.22 Score=50.31 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC 392 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l 392 (478)
-+.+|.++.+++.+..+...... .......++++...+++|++.-...+....++.+..|++.|+..++.+..
T Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 139 (394)
T TIGR00883 67 TLVITLLMMGIGTLLIGLLPSYA-------TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQV 139 (394)
T ss_pred HHHHHHHHHHHHHHHHhhCCChh-------hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHH
Confidence 35567777777766555443210 00011233466777899999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhh
Q 011747 393 SFGFASYLSSLLITIVH 409 (478)
Q Consensus 393 ~~a~g~~l~~~l~~~~~ 409 (478)
...+|..+++.+.....
T Consensus 140 ~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 140 GAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988776544
No 186
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=95.58 E-value=0.23 Score=53.07 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=74.5
Q ss_pred HHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHh
Q 011747 288 PFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNI 367 (478)
Q Consensus 288 Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~ 367 (478)
|+-..+.-++..|+++ -+-+.+++++.+++.+..++......- | ...+++++..-+++|+++-...
T Consensus 71 ~ig~~~~G~l~Dr~Gr-------r~~l~~~~~l~~i~~~~~a~~~~~~~~-----g--~~a~~~l~~~R~l~G~g~g~~~ 136 (490)
T PRK10642 71 PLGGLFFGMLGDKYGR-------QKILAITIVIMSISTFCIGLIPSYATI-----G--IWAPILLLLCKMAQGFSVGGEY 136 (490)
T ss_pred HHHHHHHHHHHHhccc-------HHHHHHHHHHHHHHHHHHHhcccHHHH-----H--HHHHHHHHHHHHHHHhHhHhhH
Confidence 3333333344556543 235677888888887776665421000 0 0122346778899999999999
Q ss_pred hhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 368 IGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 368 ~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
+.+..++.+..|++.||.+++++.....+|..+++.+..++
T Consensus 137 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 137 TGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888887666443
No 187
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=95.54 E-value=1.7 Score=46.14 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHh-------hcChhhHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNK-------QFPDHMKSI 385 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~-------~aP~~~ks~ 385 (478)
-+.+|.++..++.+...+... -+.++.+...++.++|--...+.--+.+.+ ..-++..|.
T Consensus 304 ~~~~~~~~~~i~~~~~~f~~~-------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi 370 (467)
T COG2211 304 LFLIGLLLLAVGYLLLYFTPA-------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGI 370 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhcC-------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhh
Confidence 456667777776665555431 234444455566666665555554444443 345667788
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 011747 386 ANSLLFCSFGFASYLSSLLITI 407 (478)
Q Consensus 386 ~~gl~~l~~a~g~~l~~~l~~~ 407 (478)
.-|...+..=+|..+++.+.++
T Consensus 371 ~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 371 VYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777776666666655543
No 188
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.47 E-value=2 Score=44.48 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=49.7
Q ss_pred CCCchhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE
Q 011747 30 SANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ 102 (478)
Q Consensus 30 ~~~~~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~ 102 (478)
.+.......|..++.+++.|.|..+...++++++.-+++.. .+|-..-.-| .-+|+.++|.+.+++-
T Consensus 98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a---~~rlnl~q~f---n~lGa~~gp~~g~~li 164 (422)
T COG0738 98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA---AFRLNLAQAF---NGLGAILGPLLGSSLI 164 (422)
T ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH---HHHHHHHHHh---hhhHHHHHHHHHHHHH
Confidence 45567788899999999999999999999999999987532 1232233333 3588888887766543
No 189
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=95.45 E-value=1.4 Score=46.94 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC 392 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l 392 (478)
-+.+|+++.+++.+..+.. .+.+.++...+++|+++.... .....+.+..|++.|+..+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~---------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~ 166 (476)
T PLN00028 103 GSAFLLMLTAPAVFCMSLV---------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAG 166 (476)
T ss_pred HHHHHHHHHHHHHHHHHHh---------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHH
Confidence 3455666666665544332 133445566788999987644 355677888999999999999987
Q ss_pred HhhHHHHHHHHHHHH
Q 011747 393 SFGFASYLSSLLITI 407 (478)
Q Consensus 393 ~~a~g~~l~~~l~~~ 407 (478)
...+|..+++.+...
T Consensus 167 ~~~~g~~~~~~~~~~ 181 (476)
T PLN00028 167 WGNLGGGVTQLLMPL 181 (476)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555443
No 190
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=95.23 E-value=5.3 Score=42.79 Aligned_cols=82 Identities=13% Similarity=0.001 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGI 113 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i 113 (478)
.+.+.+.+.-.+.+++.++.-.+....++|.+.++ +|..+-++ +.....|+.+++...+|+-+ +|++.+.+
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~ 239 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWI 239 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence 35666666677778888888899999999999865 36666666 77777888888888888776 89999998
Q ss_pred HHHHHHHHHHH
Q 011747 114 PTVLMIGAIIL 124 (478)
Q Consensus 114 ~~v~m~~~lii 124 (478)
.++..++.++.
T Consensus 240 ~~~~~~~~~~~ 250 (521)
T KOG0255|consen 240 ISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHH
Confidence 77766666555
No 191
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=94.75 E-value=0.29 Score=50.89 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc-ChhhHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF-PDHMKSIANSLLFC 392 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~a-P~~~ks~~~gl~~l 392 (478)
+.+|.++.+++++....... .......+|.+..+++.+++.-+..+.-.+.....+ |++.|+...+....
T Consensus 73 i~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~ 143 (437)
T TIGR00792 73 LLIGAIPFSIVLVLLFTTPD---------FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRF 143 (437)
T ss_pred HHHhHHHHHHHHHHHHhCCC---------CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHH
Confidence 56677777776665543321 001234678888889999988888877777777776 56889999998888
Q ss_pred HhhHHHHHHHHHHH
Q 011747 393 SFGFASYLSSLLIT 406 (478)
Q Consensus 393 ~~a~g~~l~~~l~~ 406 (478)
...+|..+++.+..
T Consensus 144 ~~~~g~~l~~~~~~ 157 (437)
T TIGR00792 144 GATLGGLLVAVIVL 157 (437)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877766543
No 192
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.63 E-value=0.65 Score=49.49 Aligned_cols=114 Identities=11% Similarity=0.173 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH
Q 011747 312 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF 391 (478)
Q Consensus 312 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~ 391 (478)
+-+.++.++.+++-+....... .+.+.++..=+++|++|-...|.--....+-+|+..|++..++.+
T Consensus 104 ~v~~~~~~~sa~~t~l~P~aa~-------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~ 170 (466)
T KOG2532|consen 104 RVFFISGLISALLTLLTPLAAS-------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILT 170 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHH
Confidence 4567788887777666554432 444566788899999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 011747 392 CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCAR 453 (478)
Q Consensus 392 l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~ 453 (478)
...-+|+.++..+++..-+. +-+|- .-|.+.|+++++-.++++.+.+
T Consensus 171 ~g~q~g~v~~mp~sg~lc~s-----~~GW~----------sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 171 AGSQLGTIITMPVSGLLCES-----SLGWP----------SIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHhHHHHhcc-----CCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence 99989999887777655432 13572 3345677777766666665544
No 193
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=94.61 E-value=5.4 Score=42.47 Aligned_cols=114 Identities=8% Similarity=0.007 Sum_probs=70.8
Q ss_pred cCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchH
Q 011747 270 IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSV 349 (478)
Q Consensus 270 ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~ 349 (478)
+.++++..+..+..+... +.....-++..|++. -+-+.+++++.++..+..++.-. + ...|.
T Consensus 67 ls~~q~g~l~ai~~l~~a-l~rip~G~l~Dr~G~-------R~v~~~~~ll~~i~~~~~~~a~~--------~--~~~s~ 128 (462)
T PRK15034 67 FTTDQLFLLTALPSVSGA-LLRVPYSFMVPIFGG-------RRWTVFSTAILIIPCVWLGIAVQ--------N--PNTPF 128 (462)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-------hHHHHHHHHHHHHHHHHHHHHHc--------c--cCCCH
Confidence 455555544444443333 233333445566642 23456666666666665554311 0 01466
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHH
Q 011747 350 FWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSS 402 (478)
Q Consensus 350 ~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~ 402 (478)
+.++...++.|++ -...+.++..+.+..|++.||+.+|++.-...+|..++.
T Consensus 129 ~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 129 GIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 7788889999998 557888999999999999999999999533344444333
No 194
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=94.61 E-value=0.0071 Score=65.52 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=3.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhh----hhh--------------hh--------ccC--------C-CCcchHHHHH
Q 011747 309 TLLQRIGIGMIFSILSMIVAGLVERG----RRA--------------SA--------HLH--------P-MSQVSVFWLA 353 (478)
Q Consensus 309 s~l~ki~iG~~l~~ls~~~~~~~~~~----~~~--------------~~--------~~~--------g-~~~~s~~wlv 353 (478)
..++-+++|.++.+++.++.++.+.. +.. .+ .+. . ....-.++++
T Consensus 66 hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 145 (539)
T PF03137_consen 66 HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFI 145 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHH
Confidence 34678999999999999887765321 100 11 000 0 1112245566
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHH----Hhhcccc--------cCCCCccc
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLIT----IVHGVTA--------RHGHPDWL 421 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~----~~~~~~~--------~~~~~~w~ 421 (478)
..-++.|+|..-+++.|.+|+=+.++++..++++|+.+....+|-.+|-.+++ ++-+... ..+++.|+
T Consensus 146 ~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv 225 (539)
T PF03137_consen 146 LGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV 225 (539)
T ss_dssp ------SSS-----------------------------------------------------------------------
T ss_pred HHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH
Confidence 77799999999999999999999999999999999999998887776655554 3323211 11223343
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011747 422 TNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 458 (478)
Q Consensus 422 ~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~ 458 (478)
... .-=|...|.+.++..+.++..-|++...
T Consensus 226 GAW------WLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 226 GAW------WLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp -------------------------------------
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 210 0023346667777777777666666555
No 195
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=94.60 E-value=1.6 Score=44.01 Aligned_cols=109 Identities=11% Similarity=0.182 Sum_probs=72.6
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
++..+++.+...+..|+..++. +|+++ -+-+.+|+++.+++.+.. .. -+.+++
T Consensus 38 g~~~s~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~~~-~~---------------~~~~~l 90 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPWLA----RRFGE-------ERSVAAGLLLIAAGILIR-SA---------------PGTALL 90 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH----HHhCc-------hHHHHHHHHHHHHHHHHH-Hh---------------ccHHHH
Confidence 3455666667777777666543 45432 123566666655554432 11 234455
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+..-++.+++..+..+.....+.+..|+ .|+..+|++.....+|..+++.+.....
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999988887777777777774 7899999999988899888887765443
No 196
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=94.49 E-value=0.87 Score=48.48 Aligned_cols=82 Identities=10% Similarity=0.124 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC 392 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l 392 (478)
-+.+|++.-.+++++.++.+. -|++-...+....-....|+..+++.+++.++-+|..+++...
T Consensus 310 ~i~lGl~~~~~~~~~~af~~~----------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~ 373 (463)
T KOG2816|consen 310 LISLGLLSEFLQLLLFAFATE----------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISG 373 (463)
T ss_pred HhhHHHHHHHHHHHHHHHhcc----------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHH
Confidence 467888888888888777653 1455555666666677899999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhhc
Q 011747 393 SFGFASYLSSLLITIVHG 410 (478)
Q Consensus 393 ~~a~g~~l~~~l~~~~~~ 410 (478)
..++.+.+++.+.+.+..
T Consensus 374 i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 374 IEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHHHhhhhhHHHHHHHHH
Confidence 999999999888765543
No 197
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=94.48 E-value=7.3 Score=40.71 Aligned_cols=86 Identities=16% Similarity=0.290 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH
Q 011747 312 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF 391 (478)
Q Consensus 312 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~ 391 (478)
+-+-+|+++..+..+.....+. +.. +|. .=++.+.+.-=+....=++..+.+|++..+...|+|.
T Consensus 319 ~vl~~~lvi~~~~~~~~~~~~~------------~~~-f~i--~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglya 383 (438)
T COG2270 319 PVLMIGLVILSIAALYLIFLEG------------ELD-FWI--LGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYA 383 (438)
T ss_pred eeehHHHHHHHHHHHHHHHccc------------cHH-HHH--HHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhh
Confidence 4566777777776665554442 122 232 2255666666667778889999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhhccc
Q 011747 392 CSFGFASYLSSLLITIVHGVT 412 (478)
Q Consensus 392 l~~a~g~~l~~~l~~~~~~~~ 412 (478)
++.=.++.+|+.+.+++.+.+
T Consensus 384 ltgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 384 LTGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 198
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=94.16 E-value=0.026 Score=59.13 Aligned_cols=86 Identities=8% Similarity=0.019 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHH-HHhhHHHHHhhceeeeEEee------ccch
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY-TTFTVVILITQTVLVYIQDS------VSWV 108 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY-~~iNiGa~~~~~~~~~i~~~------~g~~ 108 (478)
...+++...+.+++.|..-+....++.|.++++ +|.+++++++ ...++|+.+++.+.+++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 455666777888888888888888899988754 4888999997 56789999999999988776 4699
Q ss_pred hHhHHHHHHHHHHHHHHHh
Q 011747 109 IGFGIPTVLMIGAIILFLV 127 (478)
Q Consensus 109 ~~F~i~~v~m~~~liifl~ 127 (478)
.+|.++++..+++.++++.
T Consensus 382 ~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999887776666665543
No 199
>PRK15011 sugar efflux transporter B; Provisional
Probab=94.08 E-value=6.1 Score=40.60 Aligned_cols=86 Identities=10% Similarity=-0.039 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhH--HHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCC
Q 011747 349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMK--SIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDID 426 (478)
Q Consensus 349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~k--s~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln 426 (478)
.+++.....+.+..+....|...+.+.+..|++-| +.+.+......++|..+++.+++.+.+.- +|
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw------ 172 (393)
T PRK15011 105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF------ 172 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch------
Confidence 34443444555555567788888888777665433 45567888888899999988887664310 23
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHH
Q 011747 427 AGRLDYFYFLIAGLGGLNIVYFLY 450 (478)
Q Consensus 427 ~~~~~~~f~~la~l~~v~~vif~~ 450 (478)
..-|+..+++.++..+..+.
T Consensus 173 ----~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 173 ----TVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHh
Confidence 23456666666655554443
No 200
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=94.03 E-value=0.49 Score=48.58 Aligned_cols=127 Identities=16% Similarity=0.077 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhh---HHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHM---KSIANSL 389 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~---ks~~~gl 389 (478)
-+.+|.++..++.++..+...-.. . ....+...+.....++++|.-++-|....+..+|-+++. +...-..
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~---~---~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPS---L---PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSS---C---------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcch---h---hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHH
Confidence 356788888888877555432100 0 112445556678889999999999999999999988763 3444456
Q ss_pred HHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 011747 390 LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGI 461 (478)
Q Consensus 390 ~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~ 461 (478)
|+....+|+.++..+...+++- .+ ....|++.++.++++.++|+.-.++|+++..+
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~------~~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~ 132 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQN------YG----------WFLGFGIPAIGMLLALIVFLSGRKRYRKVAPP 132 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHC------S-----------HHHHHHHHHHHHHHHHHHHHCCCCTT--S---
T ss_pred HHHHHhhhhHhhcccchhhccc------cc----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCcCcc
Confidence 6788899999887776655531 12 34578888888999999999988888887443
No 201
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=93.95 E-value=7.7 Score=41.67 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEee-ccchhHhHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGI 113 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~-~g~~~~F~i 113 (478)
+...+.+|=++.++|.|+.--.+..+++|-=+++ .|...-+.+.+.+++|.+++..+....++. ++|+..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 6788899999999999999866666666644332 477777889999999999996444444432 589988876
Q ss_pred HHHHHHHHHHH
Q 011747 114 PTVLMIGAIIL 124 (478)
Q Consensus 114 ~~v~m~~~lii 124 (478)
..+.-++-.+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 202
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=93.89 E-value=1 Score=47.99 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=69.3
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
++.....++...+..|++.+.= +|.. +.-+=+..|.+++.++-++...++.. + +-+.|++
T Consensus 74 G~viaa~slg~~i~~liF~~Ws----~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~--------~--~~~~y~m 133 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWS----NKTG------SVKKPLIVSFLIAIIGNLLYLALAYV--------P--NGVKYLM 133 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccc----cccC------CcccCHHHHHHHHHHHHHHHHHHHhc--------c--cchHHHH
Confidence 3455667788888888888632 2221 11223688999999998888666652 1 1278899
Q ss_pred HHHHHHHHHH-HHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 353 APQLILMGFC-EAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 353 v~~y~l~~lg-El~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
...+++.|+| -.+..--.+.-..+-.+++.|+++.. .....+|..+|+.+...+
T Consensus 134 L~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~--~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 134 LVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAAT--SGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHh--hhHHHHHHHHhHHHHHHH
Confidence 9999999999 44444444433344455555555444 444445555555544443
No 203
>PRK09952 shikimate transporter; Provisional
Probab=93.88 E-value=1.2 Score=46.64 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=73.7
Q ss_pred HHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHH
Q 011747 286 WLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAF 365 (478)
Q Consensus 286 l~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~ 365 (478)
..|+-..+.-++..|+++ -+-+.+++++.+++.+..++...... -+ -.+++.++..-+++|+++-.
T Consensus 76 ~~~~g~~~~G~l~Dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~l~~~R~l~G~~~g~ 141 (438)
T PRK09952 76 FRPLGGVVFGHFGDRLGR-------KRMLMLTVWMMGIATALIGLLPSFST-----IG--WWAPVLLVTLRAIQGFAVGG 141 (438)
T ss_pred HHhhHHHHHHHHHHhhcc-------HHHHHHHHHHHHHHHHHHhcCCcHHH-----HH--HHHHHHHHHHHHHHHhhhcc
Confidence 344444444445556542 23456677777776665555432100 00 01223466677899999999
Q ss_pred HhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 366 NIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 366 ~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
..|....++.+..|++.|+..++......++|..++..+...+
T Consensus 142 ~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 142 EWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred cHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887666544
No 204
>PRK15075 citrate-proton symporter; Provisional
Probab=93.78 E-value=3.2 Score=43.37 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcch---HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVS---VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL 389 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s---~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl 389 (478)
-+.+|+++.+++.+..++..... ... ..+++..-+++|+++-...+....++.+..|++.|+..+++
T Consensus 88 ~l~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~ 157 (434)
T PRK15075 88 GLIVTLSIMASGTLLIAFVPGYA----------TIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSW 157 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHH----------HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHH
Confidence 45667777776666555443110 011 12345556889999988888888999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHh
Q 011747 390 LFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 390 ~~l~~a~g~~l~~~l~~~~ 408 (478)
+.....+|..+++.++..+
T Consensus 158 ~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 158 QSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8887777776666665543
No 205
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=93.77 E-value=1.8 Score=44.54 Aligned_cols=56 Identities=9% Similarity=-0.048 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
.+...++.+++.....+..-+++.+..++ ++...|......++|..+++.++++..
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh
Confidence 34556778888887888777777665543 334556555666777777777766553
No 206
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=93.69 E-value=0.79 Score=45.94 Aligned_cols=63 Identities=6% Similarity=-0.066 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
-|..+.+..+++++.|-.+..++...++....|++.++..+++-....++|..+++.+++.+.
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999988999999999999999999999998654
No 207
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=0.09 Score=54.10 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+++.++++=.+=++|..+...+-.++.+|-|.++. +|.+...+---++.+|.++||-..+.+-+-.|+.+-|++.
T Consensus 158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL 232 (464)
T KOG3764|consen 158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVL 232 (464)
T ss_pred hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHH
Confidence 45667777777789999999999999999999874 4888899999999999999999999998889999999998
Q ss_pred HHHHHHHHHHHHh
Q 011747 115 TVLMIGAIILFLV 127 (478)
Q Consensus 115 ~v~m~~~liifl~ 127 (478)
++.+++...+-++
T Consensus 233 ~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 233 AIVLLLDGALQLL 245 (464)
T ss_pred HHHHHHHHHHHHh
Confidence 8887777665443
No 208
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.52 E-value=0.54 Score=52.27 Aligned_cols=145 Identities=12% Similarity=0.148 Sum_probs=93.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhh----hhhhhc-------c---------C---------C--C----CcchHHH--
Q 011747 309 TLLQRIGIGMIFSILSMIVAGLVERG----RRASAH-------L---------H---------P--M----SQVSVFW-- 351 (478)
Q Consensus 309 s~l~ki~iG~~l~~ls~~~~~~~~~~----~~~~~~-------~---------~---------g--~----~~~s~~w-- 351 (478)
..++-|++|+++.+++.+..++.+.. +++... . + . . ..-+..|
T Consensus 160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 239 (735)
T KOG3626|consen 160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL 239 (735)
T ss_pred CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence 34677999999999999888776422 111000 0 0 0 0 1122233
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh----cc-ccc----CCCCcccc
Q 011747 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH----GV-TAR----HGHPDWLT 422 (478)
Q Consensus 352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~----~~-~~~----~~~~~w~~ 422 (478)
++..-++.|+|+--+.+.|.+++=+.+-++-.++++|+.+....+|=.+|-.++++.. +. .+. ..++.|+.
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG 319 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG 319 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence 4456699999999999999999999999999999999999887776666665555443 33 111 22333432
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011747 423 NDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKS 459 (478)
Q Consensus 423 ~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~ 459 (478)
. -.-=|++.++++++..+-++..-+.+++..
T Consensus 320 A------WWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 320 A------WWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 1 011345577888888888888777776543
No 209
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=93.51 E-value=5 Score=43.12 Aligned_cols=114 Identities=14% Similarity=0.157 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChh--hHHHHHHHH
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH--MKSIANSLL 390 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~--~ks~~~gl~ 390 (478)
-+.+|.++.+++.+..+..+ .+..+......+..+|--+..+...+++.++-|++ .|....+++
T Consensus 78 ~iliG~il~~lg~lll~~~~--------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~ 143 (493)
T PRK15462 78 AVMLGALLMAIGHVVLGASE--------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLM 143 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhh--------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHH
Confidence 35678887777765443211 11112223334455555555666677888888875 788899999
Q ss_pred HHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011747 391 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYR 456 (478)
Q Consensus 391 ~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~ 456 (478)
+....+|..+++.+.+.+.+.. +| .+-|.+.++.+++..++++...+++.
T Consensus 144 Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 144 YAAGNVGSIIAPIACGYAQEEY------SW----------AMGFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh------Ch----------HHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999998887664311 22 33455556556666666655554543
No 210
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=93.51 E-value=4 Score=39.72 Aligned_cols=122 Identities=15% Similarity=0.229 Sum_probs=75.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHH
Q 011747 311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL 390 (478)
Q Consensus 311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~ 390 (478)
..-..+|.++..+++......-..+ ....+.|.+.....+.+.|..+...+.+--..+.-|+ .||...|+-
T Consensus 66 ~~~l~iG~~~~~~GY~~~~l~~~~~--------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgil 136 (250)
T PF06813_consen 66 WVVLLIGAVLGFVGYGLLWLAVSGR--------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGIL 136 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc--------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhh
Confidence 3345778888888776655442211 0123444444444566677777777777777788896 699999988
Q ss_pred HHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011747 391 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 458 (478)
Q Consensus 391 ~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~ 458 (478)
--..+++..+=..+...+ +++ +.+.|..+++.+..+..++....-|...++
T Consensus 137 k~~~GLSaai~t~i~~~~------------f~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~~~ 187 (250)
T PF06813_consen 137 KGFFGLSAAIFTQIYSAF------------FGD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVPPS 187 (250)
T ss_pred hHHHHhHHHHHHHHHHHH------------cCC-----ChHHHHHHHHHHHHHHHHHHhhheeccCCc
Confidence 888888777644444322 222 134577778877776666555555555443
No 211
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=92.88 E-value=2.7 Score=45.51 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=76.7
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhH-HHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIG-IGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW 351 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~-iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~w 351 (478)
+.++....+-.+++.|+-..+. .|+.+ +|+. .+-++.++..+..++.... +..++|.
T Consensus 48 alv~~a~~LP~~Llsl~aG~la----Dr~dr--------rrili~~~~~~~~~~~~L~~l~~~----------~~~~~~~ 105 (524)
T PF05977_consen 48 ALVQAASTLPILLLSLFAGALA----DRFDR--------RRILILSQLLRALVALLLAVLAFF----------GLLSPWL 105 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hcccc--------hHHHHHHHHHHHHHHHHHHHHHHh----------CcCCHHH
Confidence 4566677777777777666543 33322 2333 3333333333333333221 2477887
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 352 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 352 lv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
++..-++.+++..+..|+-.+.+-+..|++.-....++......++..+|+.++++.
T Consensus 106 Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L 162 (524)
T PF05977_consen 106 LLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL 162 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 888889999999999999999999999998888888888877777777776666543
No 212
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.98 E-value=6.9 Score=39.01 Aligned_cols=88 Identities=8% Similarity=0.188 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHH
Q 011747 355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFY 434 (478)
Q Consensus 355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f 434 (478)
...++|++--++.-.---.+....|++.-|+.-|.-.....+|-.+.+.+++++.+.. +++ . .++.||
T Consensus 358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~-----g~y----~---~le~ff 425 (459)
T KOG4686|consen 358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD-----GSY----D---NLEAFF 425 (459)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC-----Cch----h---hHHHHH
Confidence 4466777766666666667888999999998888888777888877777777665421 221 1 257788
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 011747 435 FLIAGLGGLNIVYFLYCARR 454 (478)
Q Consensus 435 ~~la~l~~v~~vif~~~~~~ 454 (478)
...+.+++.+..+.+.+-+|
T Consensus 426 l~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 426 LIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred HHHHHHHHHHHHHHhheecc
Confidence 88888888888877776554
No 213
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=91.66 E-value=5.6 Score=40.70 Aligned_cols=60 Identities=10% Similarity=-0.107 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+.|+++..+++++.+.-...|...+.+.+ +++.++...|......++|..+++.+++...
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~ 152 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLI 152 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888877777877666543 3567788999998888999999888776654
No 214
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=91.29 E-value=7.6 Score=39.85 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=82.3
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHH
Q 011747 308 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN 387 (478)
Q Consensus 308 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~ 387 (478)
+++.+-+..++++.+++.++ |. -.+.+-+...-++.+.|=....+.--+++-+.-|++. +.+|
T Consensus 74 ~g~er~l~~~Llli~~G~~i-------R~---------~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mt 136 (395)
T COG2807 74 FGEERSLFLALLLIAAGILI-------RS---------LGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMT 136 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHH-------Hh---------cccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHH
Confidence 46677788888877766542 21 0244556677788899989999999999999999998 8999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011747 388 SLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYR 456 (478)
Q Consensus 388 gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~ 456 (478)
|+|..+.++|..++..+........ .+|- .. ....+.+++++.++++-...|++
T Consensus 137 glYs~sl~~~aaLaa~lavpla~~~-----~gW~--------~a--L~~WAl~allAl~~WlPq~~r~~ 190 (395)
T COG2807 137 GLYSTSLGAGAALAAALAVPLAQHS-----GGWR--------GA--LGFWALLALLALLIWLPQALREQ 190 (395)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHhh-----ccHH--------HH--HHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999887765444311 2352 12 22345666777777776654443
No 215
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=91.25 E-value=1.3 Score=45.67 Aligned_cols=102 Identities=11% Similarity=0.054 Sum_probs=72.4
Q ss_pred HHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHH
Q 011747 286 WLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAF 365 (478)
Q Consensus 286 l~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~ 365 (478)
++-+-...|-.+-.|+++|| -+.+|.+..+++++..+... +...++..=++.|+..-.
T Consensus 80 lQ~~sS~~~G~~SD~yGRkp-------vll~c~~~va~s~ll~~~S~---------------~F~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 80 LQFISSPLWGCLSDRYGRKP-------VLLACLIGVALSYLLWALSR---------------NFAAFVLARFLGGIFKGN 137 (451)
T ss_pred HHHHhhhhhhhhhhhhCchH-------HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhhccCc
Confidence 34344444444556665432 35667777777666554332 122355556778888877
Q ss_pred HhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747 366 NIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 366 ~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~ 410 (478)
+++ .-+++.+.++++.|++.|+....+.++|..+|+.+++....
T Consensus 138 l~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 138 LSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 777 68899999999999999999999999999999999987765
No 216
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=90.88 E-value=16 Score=39.24 Aligned_cols=82 Identities=7% Similarity=0.073 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhH--
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFG-- 112 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~-- 112 (478)
+...+.+.-++.++|.|..- .....+..-++++ +|.++.+++-.+.++|.++++.+++++. .+||+.-+-
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence 45666777788999999987 8888888888754 5899999999999999999998888744 578875443
Q ss_pred -HHHHHHHHHHHH
Q 011747 113 -IPTVLMIGAIIL 124 (478)
Q Consensus 113 -i~~v~m~~~lii 124 (478)
|+...+.+++++
T Consensus 186 ~Isl~s~~~a~~~ 198 (511)
T TIGR00806 186 IISLVFMTFSVFL 198 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 445555555544
No 217
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=90.73 E-value=15 Score=37.58 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCc
Q 011747 349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAG 428 (478)
Q Consensus 349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~ 428 (478)
.+|.+....+.++......+..-.+..+..+++.++.+.+.......+|..+++.+.....+.- +|
T Consensus 97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw-------- 162 (390)
T TIGR02718 97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ-------- 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH--------
Confidence 4455555555666666667766667778888888888888888888888888886655443210 23
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 011747 429 RLDYFYFLIAGLGGLNIVYFLY 450 (478)
Q Consensus 429 ~~~~~f~~la~l~~v~~vif~~ 450 (478)
..-|++.+++.++..+..+.
T Consensus 163 --~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 163 --RPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred --HHHHHHHHHHHHHHHHHHHH
Confidence 23466677766665555433
No 218
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=90.52 E-value=19 Score=37.49 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=63.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHH
Q 011747 309 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS 388 (478)
Q Consensus 309 s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~g 388 (478)
+.-+-+.+|+.+.+++.....=.. +..+....+...++++.|=-+...++..+++...|++-.+.-|.
T Consensus 76 gyk~gi~lgL~l~avg~~lF~pAa------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rln 143 (422)
T COG0738 76 GYKAGIVLGLLLYAVGAALFWPAA------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLN 143 (422)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhh------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHH
Confidence 334457778888777765432111 12344446667789999999999999999999999988887777
Q ss_pred HHHHHhhHHHHHHHHHHHHh
Q 011747 389 LLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 389 l~~l~~a~g~~l~~~l~~~~ 408 (478)
+---..++|..+++.+++..
T Consensus 144 l~q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 144 LAQAFNGLGAILGPLLGSSL 163 (422)
T ss_pred HHHHhhhhHHHHHHHHHHHH
Confidence 77777788888887777543
No 219
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=90.18 E-value=9.6 Score=38.90 Aligned_cols=60 Identities=12% Similarity=-0.101 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+.|.++...++.+++.....|..-+.+.+.. +.++..+|......++|..+++.+++...
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg~l~ 152 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTGKLV 152 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667788887777776655555442 33455556666666777777777776554
No 220
>PF13347 MFS_2: MFS/sugar transport protein
Probab=90.12 E-value=1.7 Score=45.25 Aligned_cols=116 Identities=21% Similarity=0.169 Sum_probs=75.5
Q ss_pred HHHHHHHHHhHHHHHHHhhhcCC---CCC-CCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHH
Q 011747 282 TIGLWLPFYDTVLVPALRKITKH---EGG-ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLI 357 (478)
Q Consensus 282 ~iill~Pl~~~i~~p~~~r~~~~---~~~-~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~ 357 (478)
.+++..++.|.+.-|+.-....+ +.+ .+| =+.+|.++.++++.......-. +-.......|+...|+
T Consensus 41 ~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp--~~l~g~i~~~~~~~llf~~~p~-------~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 41 LILLVGRIWDAITDPLIGYLSDRTRTRWGRRRP--WILIGAILLALSFFLLFSPPPA-------GLSFTAKLVWLFVFYI 111 (428)
T ss_pred HHHHHHHHhhhhcCCcEEEEEeeecccccccce--EeehhhHHHHHHHHHhhccccc-------hhhhhhHHHHHHHHHH
Confidence 45556677777777754422211 000 011 2457888888887766543110 0011246678888999
Q ss_pred HHHHHHHHHhhhHHHHHHhhcCh-hhHHHHHHHHHHHhhHHHHHHHHHHH
Q 011747 358 LMGFCEAFNIIGQIEFFNKQFPD-HMKSIANSLLFCSFGFASYLSSLLIT 406 (478)
Q Consensus 358 l~~lgEl~~~~~gle~~~~~aP~-~~ks~~~gl~~l~~a~g~~l~~~l~~ 406 (478)
+..++--+....-.+...+.++. +.|....+.-.+...+|+.+.+.+..
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~ 161 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAP 161 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998889999999985 68888888888888888865555544
No 221
>PRK09528 lacY galactoside permease; Reviewed
Probab=89.99 E-value=8.1 Score=39.99 Aligned_cols=28 Identities=7% Similarity=-0.069 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 382 MKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 382 ~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
.++..+|......++|..+++.+++...
T Consensus 138 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 165 (420)
T PRK09528 138 RSGFEYGRARMWGSLGWALCAFIAGILF 165 (420)
T ss_pred hccccchhhHHhhhHHHHHHHHHHHHHH
Confidence 3466677766667777777777776554
No 222
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=89.34 E-value=7.6 Score=41.70 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=77.4
Q ss_pred cccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
+|+.+...+...+..++..++- .+.++ .+-+.++.++..++.++.+.. .+++++
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~----d~~GR-------k~~l~~~~~~~~iG~ii~~~a---------------~~~~~l 145 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLG----DRIGR-------KKTLLLAVVLFLIGAIIIALA---------------PSWYQL 145 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhhh-------HHHHHHHHHHHHHHHHHHHHh---------------hhHHHH
Confidence 4666666666666666555543 33322 123455555555555544432 367889
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHH
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLI 405 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~ 405 (478)
+..-++.|+|=-+.+....-++...||++.||.+.++..+...+|-.++-.++
T Consensus 146 ~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 146 IVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred HHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998888884443
No 223
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=89.21 E-value=24 Score=38.80 Aligned_cols=121 Identities=12% Similarity=0.194 Sum_probs=69.5
Q ss_pred hhccCCCCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 011747 259 KMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRAS 338 (478)
Q Consensus 259 ~md~~~~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~ 338 (478)
+++.++| + .-...|+...+.+..-+..|++.++---+-|| .=+.+|.++..+++++.+-.+
T Consensus 69 ~I~~diG-~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~atA~------ 129 (599)
T PF06609_consen 69 YINADIG-G-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCATAQ------ 129 (599)
T ss_pred HHHHhcC-C-CccchHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhcCC------
Confidence 3555665 2 12335666667776666777776654222222 235667777777777655322
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 339 AHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 339 ~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
|+.-++...++.|+|--..... ...+.+..|.+-|....++-....-.....|+.+....
T Consensus 130 ---------~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 130 ---------NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred ---------cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 2222456667777775444433 33467888999888777665555444444556665443
No 224
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=88.57 E-value=0.0005 Score=72.17 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe---eccchhHh
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD---SVSWVIGF 111 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~---~~g~~~~F 111 (478)
+...+.++-.+.++|.|+.-+....+..+.-+++ .|.....++..+.++|.+++..+...+.. +.+|+..+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence 6777888888999999999999999888766543 46667777888888998888765443322 35699998
Q ss_pred HHHHHHHHHHH
Q 011747 112 GIPTVLMIGAI 122 (478)
Q Consensus 112 ~i~~v~m~~~l 122 (478)
.++++..++.+
T Consensus 175 ~~~~~~~l~~~ 185 (451)
T PF00083_consen 175 IFGAIPSLLVL 185 (451)
T ss_pred ccccccccccc
Confidence 88776555433
No 225
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=87.95 E-value=13 Score=39.69 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHH
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLI 405 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~ 405 (478)
+...++..-++.|+..-+......=|....||++.||.+-.+.-+...+|..++..++
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 4455778889999999999999999999999999999999999999999999987665
No 226
>PTZ00207 hypothetical protein; Provisional
Probab=87.62 E-value=49 Score=36.45 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHH-hhceeeeEEeeccchhHhH
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILI-TQTVLVYIQDSVSWVIGFG 112 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~-~~~~~~~i~~~~g~~~~F~ 112 (478)
.+.+.+++...+.++|.|.+-+.......+.|++ +|..+..+...+.++|+.+ +++...++.+ +|+..|.
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 3567777788888899888877777778888852 3788999999999999975 5555555543 4655555
Q ss_pred HHHH-HHHHHHHHH
Q 011747 113 IPTV-LMIGAIILF 125 (478)
Q Consensus 113 i~~v-~m~~~liif 125 (478)
+.++ +.+++++.+
T Consensus 189 ~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 189 FLMSFALVVGILAI 202 (591)
T ss_pred HHHHHHHHHHHHHH
Confidence 4443 333333333
No 227
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=86.88 E-value=16 Score=38.14 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=76.1
Q ss_pred CcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCc
Q 011747 267 KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ 346 (478)
Q Consensus 267 g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~ 346 (478)
++...+++...+..+-++.-+ ++..+.-++..|++. -+-..+++++..+-.+..++... .
T Consensus 43 ~~~LS~~q~~ll~aiPil~Ga-llRl~~g~l~drfGg-------R~~~~~s~~l~~IP~~~~~~a~~------------~ 102 (417)
T COG2223 43 DFGLSEGQKGLLVAIPILVGA-LLRLPYGFLTDRFGG-------RKWTILSMLLLLIPCLGLAFAVT------------Y 102 (417)
T ss_pred ccCCCHHHHHHHHHHHHHHhH-HHHHHHHhhhcccCc-------hHHHHHHHHHHHHHHHHHHHHcc------------C
Confidence 344788877666666554433 344444445556543 23345666666776666665542 1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
-|.|+++..=++.|++-.- +..++..+.+-=|++.||..+|++- .-.+|..+...+..++.
T Consensus 103 ~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~ 163 (417)
T COG2223 103 PSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA 163 (417)
T ss_pred CchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence 2335555555666666543 4457888899999999999999998 76777777666665544
No 228
>PRK09669 putative symporter YagG; Provisional
Probab=86.63 E-value=3.8 Score=42.92 Aligned_cols=83 Identities=7% Similarity=-0.062 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc-ChhhHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF-PDHMKSIANSLLFC 392 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~a-P~~~ks~~~gl~~l 392 (478)
+.+|.+..+++++....... .+ .....+|....|++.+++--+..+.-.+.....+ +++.|+...+....
T Consensus 83 il~~~~~~~i~~~l~f~~p~--------~~-~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~ 153 (444)
T PRK09669 83 LLWFAIPFGVVCLLTFYTPD--------FG-ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFA 153 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCC--------CC-cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHH
Confidence 44566666666544332211 01 1245678888888887776677776778887776 44778888887777
Q ss_pred HhhHHHHHHHHHH
Q 011747 393 SFGFASYLSSLLI 405 (478)
Q Consensus 393 ~~a~g~~l~~~l~ 405 (478)
...+|..+++.+.
T Consensus 154 ~~~~G~~i~~~~~ 166 (444)
T PRK09669 154 LSFIGGLIVSVIA 166 (444)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766544
No 229
>PRK11462 putative transporter; Provisional
Probab=86.43 E-value=36 Score=36.01 Aligned_cols=83 Identities=12% Similarity=-0.002 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC-hhhHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-DHMKSIANSLLFC 392 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP-~~~ks~~~gl~~l 392 (478)
+.+|-+..+++++....... .+ ...-..|....|++..++--+....-.++....++ .+.|+..++....
T Consensus 83 il~g~i~~~i~~~llf~~p~--------~s-~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~ 153 (460)
T PRK11462 83 VLFGALPFGIVCVLAYSTPD--------LS-MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFV 153 (460)
T ss_pred HhHHHHHHHHHHHHHHhCCC--------CC-cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45566666666655443321 00 11236788899999999999999999999999998 6889999998888
Q ss_pred HhhHHHHHHHHHH
Q 011747 393 SFGFASYLSSLLI 405 (478)
Q Consensus 393 ~~a~g~~l~~~l~ 405 (478)
...+|..+++.+.
T Consensus 154 ~~~iG~~~~~~~~ 166 (460)
T PRK11462 154 LATAGGMLSTVLM 166 (460)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877766554
No 230
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=86.41 E-value=25 Score=37.47 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=39.1
Q ss_pred HHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747 364 AFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 364 l~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~ 410 (478)
..+...+++++++.+.++.|+..+|+-..+.+.+..+++.+++...+
T Consensus 127 ~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~ 173 (463)
T KOG2816|consen 127 SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK 173 (463)
T ss_pred hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44566788999999999999999999999888888888888775543
No 231
>PRK10429 melibiose:sodium symporter; Provisional
Probab=86.21 E-value=12 Score=39.59 Aligned_cols=82 Identities=10% Similarity=0.019 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc-ChhhHHHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF-PDHMKSIANSLLFC 392 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~a-P~~~ks~~~gl~~l 392 (478)
+.+|.+..+++++....... .......+|....|++..++--+..+.-.+.....+ .++.|+...+.-..
T Consensus 80 il~g~i~~~i~~~llf~~p~---------~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~ 150 (473)
T PRK10429 80 ILIGTLANSVVLFLLFSAHL---------FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRF 150 (473)
T ss_pred HhhhhHHHHHHHHHHHcCCC---------CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHH
Confidence 45566777777654432210 011234678888899998888888888999999998 47888888887455
Q ss_pred HhhHHHHHHHHH
Q 011747 393 SFGFASYLSSLL 404 (478)
Q Consensus 393 ~~a~g~~l~~~l 404 (478)
...+|..+.+.+
T Consensus 151 ~~~ig~~~~~~~ 162 (473)
T PRK10429 151 FASLAGFVTAGF 162 (473)
T ss_pred HHHHHHHHHHHH
Confidence 555555554433
No 232
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=85.68 E-value=19 Score=38.11 Aligned_cols=124 Identities=11% Similarity=0.093 Sum_probs=65.7
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHH
Q 011747 308 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN 387 (478)
Q Consensus 308 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~ 387 (478)
++...|+..++++..+-++.....-. + +.+.....+..+..-++.+++..+...+.+.++...-|+.+++
T Consensus 72 i~~~~Ri~~~lv~~~~~~~~~~~l~~-~------~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~~~~a--- 141 (437)
T TIGR00939 72 IPVTVRLLGGLVILLVVVILVMVLVK-V------QTSETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPSTYSSA--- 141 (437)
T ss_pred cCccchhHHHHHHHHHHHHHHhheee-e------cCCcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHHHHHH---
Confidence 45567899887765555554443211 1 1111123444555667788898888888888887666554444
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 011747 388 SLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYC 451 (478)
Q Consensus 388 gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~ 451 (478)
++...|++..++..+.-+.... .+++ . +...+ ...||.+-+++.++..+.|..+
T Consensus 142 --~~~G~g~aGv~~s~~~ii~~a~---~~~~-~---~~~~~-a~~YF~~a~~v~l~~i~~~~~l 195 (437)
T TIGR00939 142 --VMSGQGLAGVLTSLAMILVKAS---GNDS-H---GLKKS-ALGYFGTPCVVQLICIVCYLLL 195 (437)
T ss_pred --HHhcchhHHHHHHHHHHHHHHh---cCCc-c---chhhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544332221110 0000 0 12222 2336666666677777766654
No 233
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=84.40 E-value=11 Score=39.71 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHH---hhcChhhHHHHHHHH
Q 011747 314 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFN---KQFPDHMKSIANSLL 390 (478)
Q Consensus 314 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~---~~aP~~~ks~~~gl~ 390 (478)
+.+|-++.+++.+..+..... ..+........++.++|..+..+.+=+.+. ++-|++ +|-.++..
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~-----------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~ 129 (433)
T PF03092_consen 62 MIIGWLLGAVSALVLALLPAS-----------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFV 129 (433)
T ss_pred HHHHHHHHHHHHHHHHhcccc-----------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHH
Confidence 566666666555555544321 122222333445555555555555444443 334566 88999999
Q ss_pred HHHhhHHHHHHHHHHHHhh
Q 011747 391 FCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 391 ~l~~a~g~~l~~~l~~~~~ 409 (478)
+....+|+.++..+++...
T Consensus 130 ~~~~~~G~lv~~~l~G~l~ 148 (433)
T PF03092_consen 130 WGVRSVGSLVGSLLSGPLL 148 (433)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 9999999998887776443
No 234
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=83.24 E-value=1.9 Score=42.76 Aligned_cols=81 Identities=9% Similarity=0.049 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc---chhHhHHHH
Q 011747 39 LVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS---WVIGFGIPT 115 (478)
Q Consensus 39 ~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g---~~~~F~i~~ 115 (478)
-|.++.++++.........-+.++...+|+ +...+|...|-.-|+|-.+.+++++.+.+..| |--+|.+..
T Consensus 355 Py~~m~~lGLsysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 355 PYTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 356777777777666555677777777765 58999999999999999999999999988644 555666655
Q ss_pred HHHHHHHHHH
Q 011747 116 VLMIGAIILF 125 (478)
Q Consensus 116 v~m~~~liif 125 (478)
..|.+-.+..
T Consensus 429 ~~~aL~svgi 438 (459)
T KOG4686|consen 429 GLMALTSVGI 438 (459)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 235
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=82.59 E-value=1.1 Score=47.88 Aligned_cols=86 Identities=20% Similarity=0.177 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc-chhHhHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGI 113 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g-~~~~F~i 113 (478)
+.+.+++.-+++++..|...+..-++.+++-+++ +...+|.+|...--..+++||++.+.+.+..| .+++|..
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 4445666666899999999999999999999876 35889999999999999999999998887665 8899998
Q ss_pred HHHHHHHHHHHHH
Q 011747 114 PTVLMIGAIILFL 126 (478)
Q Consensus 114 ~~v~m~~~liifl 126 (478)
-.+.++++++++.
T Consensus 453 l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 453 LLVLFLIGLILLF 465 (477)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888774
No 236
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.33 E-value=5.4 Score=44.63 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe------------
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD------------ 103 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~------------ 103 (478)
+.++++|..+.++|. .-+.++|---.||... +++....+.++|..--+|..+|.++.++..+
T Consensus 237 ~llff~~q~l~GIG~----Tpi~tlGisYiDDnvk--~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~i 310 (735)
T KOG3626|consen 237 FLLFFLGQLLLGIGA----TPIFTLGISYIDDNVK--KKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGI 310 (735)
T ss_pred HHHHHHHHHHhhcCC----CCCccCCCcccccccc--ccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCC
Confidence 446777888888877 4455555555554432 2356778888998888888888766543211
Q ss_pred ------ec-cchhHhHHHHHHHHHHHHHHHhcccce
Q 011747 104 ------SV-SWVIGFGIPTVLMIGAIILFLVGKKLY 132 (478)
Q Consensus 104 ------~~-g~~~~F~i~~v~m~~~liifl~g~~~~ 132 (478)
.+ .||.+|++++..++++.+.++..-|.+
T Consensus 311 t~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 311 TPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 12 499999999999998888877644433
No 237
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=80.96 E-value=49 Score=35.31 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=75.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCh-hhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccC
Q 011747 346 QVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD-HMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTND 424 (478)
Q Consensus 346 ~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~-~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ 424 (478)
..+..|....|.+++++--++...--+......+. +.|....+.++....+|+.+...+...+.. ++.++
T Consensus 109 ~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~---------~~g~~ 179 (467)
T COG2211 109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK---------LFGGG 179 (467)
T ss_pred CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCCC
Confidence 36778888899999999888888888888777665 788899999999999998887766643322 11110
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 011747 425 IDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQ 462 (478)
Q Consensus 425 ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~ 462 (478)
.+...|+....+++++..+.++.+.+..|-|..+.
T Consensus 180 ---~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~ 214 (467)
T COG2211 180 ---DKALGYQGTALVLGVIGVILLLFCFFNVKERVVET 214 (467)
T ss_pred ---cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 11344667777777777777777777766666543
No 238
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=80.69 E-value=1.3 Score=47.82 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc-chhHhHHH
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIP 114 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g-~~~~F~i~ 114 (478)
.+.+..--+++++..|.+-.+.+....|....+ +..++|.+..+..-+++++++-+++++.+..| |...|..+
T Consensus 388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~ 461 (509)
T KOG2504|consen 388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFC 461 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhc
Confidence 344444455666667777666667777877765 58999999999999999999999999988776 99999999
Q ss_pred HHHHHHHHHHHHhcc
Q 011747 115 TVLMIGAIILFLVGK 129 (478)
Q Consensus 115 ~v~m~~~liifl~g~ 129 (478)
++.++++....+.-+
T Consensus 462 g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 462 GLCFLLSAVLLLILR 476 (509)
T ss_pred ChHHHHHHHHHHHhH
Confidence 999999997766543
No 239
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=80.54 E-value=37 Score=35.49 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=52.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHH
Q 011747 309 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS 388 (478)
Q Consensus 309 s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~g 388 (478)
+-..|+.+..+++.++|++.++.+ ++++-+..-++.+++--+.-.+-+++....- + ...+
T Consensus 87 ~y~~Ri~~~~~l~~~g~l~va~~~---------------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~-~----~~l~ 146 (402)
T PF02487_consen 87 PYWIRILICVALSAAGMLLVAFSP---------------SVWVRLLGVVLASLSSGLGEVTFLSLTHFYG-K----SSLS 146 (402)
T ss_pred cchHHHHHHHHHHHHHHhheeecc---------------chhHHHHHHHHHhhhhhhhHHHHHHHHHhcC-c----cccc
Confidence 456799999999999998665432 3344445555555555555555666644332 2 3578
Q ss_pred HHHHHhhHHHHHHHHHHHHhh
Q 011747 389 LLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 389 l~~l~~a~g~~l~~~l~~~~~ 409 (478)
.|...+|.+..+|........
T Consensus 147 ~wssGTG~aGl~Ga~~y~~lT 167 (402)
T PF02487_consen 147 AWSSGTGGAGLVGALYYLGLT 167 (402)
T ss_pred cccCCcChhhHHHHHHHHHHH
Confidence 888888888888876665443
No 240
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=80.05 E-value=22 Score=33.35 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCC--CCcchHHHHHHH
Q 011747 278 ISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP--MSQVSVFWLAPQ 355 (478)
Q Consensus 278 ~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g--~~~~s~~wlv~~ 355 (478)
.|.+.+.+..++..+..++.++|+ .+..++..+++...++....+.............+ +.........+.
T Consensus 107 ~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 179 (205)
T PF01891_consen 107 ANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAGDYPWMALVQAYLPS 179 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence 466666666666677677666553 23345566666556665544433221111111101 122344456688
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcCh
Q 011747 356 LILMGFCEAFNIIGQIEFFNKQFPD 380 (478)
Q Consensus 356 y~l~~lgEl~~~~~gle~~~~~aP~ 380 (478)
++++++.|-++.-....+..+.-|+
T Consensus 180 ~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 180 HLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999988885
No 241
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=78.36 E-value=39 Score=35.80 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHH
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF 433 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~ 433 (478)
..-.+++..+.-..|+|.|+.-...=+...+...|+ ....|...+..+.-.........+.++|. +....
T Consensus 364 ~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGl---l~~~gq~f~~~~~~~~~~~~~~~~~~~~~-------~~~~i 433 (480)
T KOG2563|consen 364 TTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGL---LNLSGQIFGVILVFIMGILAEDLGPPGNT-------FPANI 433 (480)
T ss_pred hhHHHHHHhhcCCCCcceeeeeeeccccCCccccee---EEeehhHHHHHHHHHHHHHhhccCCCCCC-------ccchh
Confidence 334667778888899999999887666666777774 34445555544443332221100111111 01122
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCc
Q 011747 434 YFLIAGLGGLNIVYFLYCARRYRYKSGIQS 463 (478)
Q Consensus 434 f~~la~l~~v~~vif~~~~~~~~~~~~~~~ 463 (478)
+ ++..+++.+++-.+...+|||++++++
T Consensus 434 ~--~~~~~~l~~~lva~~r~~y~R~~~e~~ 461 (480)
T KOG2563|consen 434 F--LTVSALLGAILVAFFRPDYRRLRAEAG 461 (480)
T ss_pred H--hHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence 3 333444444555556667777766654
No 242
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.04 E-value=90 Score=31.80 Aligned_cols=102 Identities=12% Similarity=0.188 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCC------Ccc
Q 011747 347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGH------PDW 420 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~------~~w 420 (478)
-|+-.+... +.+++.+...+++-+-|..+.=|.-++++. +..+++..+= .+.++.+.. ++..+ +..
T Consensus 111 hS~afl~L~-F~LAivdc~SnVtFLPFMs~lpp~fL~afF-----vG~GLSaLlP-sllaLaQGt-g~~~C~~n~t~~r~ 182 (439)
T KOG4255|consen 111 HSWAFLSLL-FGLAIVDCTSNVTFLPFMSQLPPAFLNAFF-----VGMGLSALLP-SLLALAQGT-GRLECDLNGTPGRP 182 (439)
T ss_pred chHHHHHHH-HHHHHHHhhccchhhhhhhhCChHHHHHHH-----HhccHHHHHH-HHHHHHccC-CceeecCCCCCCCC
Confidence 344433333 778999999999999999998888777643 3344444442 233344422 11000 112
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011747 421 LTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKS 459 (478)
Q Consensus 421 ~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~ 459 (478)
++.++. ...||+++..++..+.+.|+.+.|--+-.+
T Consensus 183 fP~rFs---~s~FFl~l~~~~~~alaAF~vL~r~~~~~~ 218 (439)
T KOG4255|consen 183 FPPRFS---VSTFFLALFAFTCAALAAFFVLYRLGAHWP 218 (439)
T ss_pred CCCCcc---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 333222 356999999999999999988877655544
No 243
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=76.85 E-value=3.5 Score=37.27 Aligned_cols=29 Identities=31% Similarity=0.605 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011747 430 LDYFYFLIAGLGGLNIVYFLYCARRYRYK 458 (478)
Q Consensus 430 ~~~~f~~la~l~~v~~vif~~~~~~~~~~ 458 (478)
+..-+.++.+++.+.++.|++-..|.|++
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r~~ 122 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLRRR 122 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34455667777777777777666555554
No 244
>PRK09848 glucuronide transporter; Provisional
Probab=74.36 E-value=45 Score=34.76 Aligned_cols=50 Identities=8% Similarity=0.030 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCh-hhHHHHHHHHHHHhhH
Q 011747 347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD-HMKSIANSLLFCSFGF 396 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~-~~ks~~~gl~~l~~a~ 396 (478)
...+|....|++.+++.-+..+.-.+.....++. +.|+...+.-....++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~ 157 (448)
T PRK09848 107 SKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASL 157 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 3567778888888988888887777766655544 4566665554444333
No 245
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=74.02 E-value=28 Score=37.24 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
.-++.|++--+.+....+..+++--+.-+++++|++-.....+..+++.+.....
T Consensus 394 ~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~ 448 (488)
T KOG2325|consen 394 FIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIF 448 (488)
T ss_pred hhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhH
Confidence 3456777777888888999999998999999999999999999999988876544
No 246
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=73.79 E-value=67 Score=28.79 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
+.+.++|.-++.|+|+-+.+.+.-.+..+.+.++.++...|+++.....+...|+.+.-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999999999999999999999999999988888877777665443
No 247
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=73.32 E-value=1.1e+02 Score=32.38 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHH---HHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 351 WLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKS---IANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 351 wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks---~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
+.+...++.+++.....+.+=+++.+..+ +.++ -.++..+...++|..++..+++...
T Consensus 122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~ 182 (468)
T TIGR00788 122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL 182 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 33345678888888888888888888776 3333 3555555556678888777776544
No 248
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=72.95 E-value=14 Score=36.12 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=23.4
Q ss_pred cChhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 011747 378 FPDHMKSIANSLLFCSFGFASYLSSLLITI 407 (478)
Q Consensus 378 aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~ 407 (478)
+..-+|...+|+=++.|+..|.+.|...+.
T Consensus 72 ~vpii~~iGLglg~liW~s~n~l~Gw~~gr 101 (254)
T PF07857_consen 72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGR 101 (254)
T ss_pred ehhHhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 345678888888888898888888877753
No 249
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=72.45 E-value=1.2e+02 Score=31.80 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
-+++|+-..-++.|++-.. -++-++++|...|++.=-.+.+.--.+.-+|..+|+.++.+.-
T Consensus 92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555655555666666544 5567799999999877777887777777778888888877654
No 250
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=70.14 E-value=1.2 Score=48.39 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=2.4
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe------------
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD------------ 103 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~------------ 103 (478)
...+++|-++.++|..-+-+--.+++=|-.++ ++-.-++.++|..-.+|..+|.++.+...+
T Consensus 141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~------~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~ 214 (539)
T PF03137_consen 141 FYVFILGQLLIGIGATPLYTLGITYIDDNVSK------KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDG 214 (539)
T ss_dssp -----------SSS------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccCCccceeeeecccccc------ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccC
Confidence 56677777788887765544444444433332 235566788899999999888877654321
Q ss_pred ---------ec-cchhHhHHHHHHHHHHHHHHHhcccce
Q 011747 104 ---------SV-SWVIGFGIPTVLMIGAIILFLVGKKLY 132 (478)
Q Consensus 104 ---------~~-g~~~~F~i~~v~m~~~liifl~g~~~~ 132 (478)
.+ .||+||.++++..++..+.++..-|.+
T Consensus 215 ~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 215 VGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp ---------------------------------------
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 12 399999999988888887776654444
No 251
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=66.46 E-value=69 Score=34.17 Aligned_cols=86 Identities=13% Similarity=0.206 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCC
Q 011747 347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDID 426 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln 426 (478)
-|.++.+..=++.|++..-....+...+.+.-+++.|+..+.+ ......+..++..+.+.+.. +|
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W------ 233 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW------ 233 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH------
Confidence 4667788888999999999999999999999999999999999 54444444444444443331 34
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHh
Q 011747 427 AGRLDYFYFLIAGLGGLNIVYFLYC 451 (478)
Q Consensus 427 ~~~~~~~f~~la~l~~v~~vif~~~ 451 (478)
.++++..++.+++..+.+++.
T Consensus 234 ----r~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 234 ----RWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred ----HHHHHHHHHHHHHHHHHHHcc
Confidence 356666677666666554443
No 252
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=66.07 E-value=6.2 Score=38.28 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=13.9
Q ss_pred HHHHHhhhccccccCCCcccccCc
Q 011747 446 VYFLYCARRYRYKSGIQSLEDQND 469 (478)
Q Consensus 446 vif~~~~~~~~~~~~~~~~~~~~~ 469 (478)
+.+..-++|++++-.+++|||++|
T Consensus 66 ~~~~~~~~k~~~~~~~~~deD~~~ 89 (248)
T PF11368_consen 66 FYFIYKSRKYKKLYEEEEDEDENE 89 (248)
T ss_pred HHHHHHHHHHHHHhcccccchHHH
Confidence 334445666666666656666665
No 253
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=64.46 E-value=5.6 Score=41.49 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHh-hHHHHHhhceeeeEEeecc------chhHhHH
Q 011747 41 MGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF-TVVILITQTVLVYIQDSVS------WVIGFGI 113 (478)
Q Consensus 41 ~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~i-NiGa~~~~~~~~~i~~~~g------~~~~F~i 113 (478)
++..+-++..|.+-.....++.+..+++. |.++=+++.... -+|..++.+++|++-+++| |...|.+
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v 379 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLV 379 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 33445677777777777788888776552 444555554443 3889999999999887665 4566778
Q ss_pred HHHHHHHHHHHHHhc
Q 011747 114 PTVLMIGAIILFLVG 128 (478)
Q Consensus 114 ~~v~m~~~liifl~g 128 (478)
+++..++..++|+..
T Consensus 380 ~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 380 FAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888777777777654
No 254
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=63.80 E-value=82 Score=31.91 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhh-----hccCCC-------Cc
Q 011747 279 SMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRAS-----AHLHPM-------SQ 346 (478)
Q Consensus 279 n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~-----~~~~g~-------~~ 346 (478)
|.+.+.+..|+..+.+|+..+|+. ++..+.+..+++-..++....++........ ...+|. ..
T Consensus 109 N~l~ma~~~~~v~y~iyr~~~~~~-----~~~~~~~~~~f~gg~l~i~~~al~~al~l~~~~~~~~~~~g~~~~~~~~~~ 183 (322)
T PRK07331 109 NCFNMAFIMPFVGYYIYKFIKKWT-----KSKKGEYIGAFIGGYIGINVAALFAAIEFGLQPLLFKDASGLPLYSPYPLS 183 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCccccccchHH
Confidence 555444555667777777766543 2333344445555555554443322111000 001121 11
Q ss_pred chHHHHHHHHHHH-HHHHHHHhhhHHHHHHhhcChhh
Q 011747 347 VSVFWLAPQLILM-GFCEAFNIIGQIEFFNKQFPDHM 382 (478)
Q Consensus 347 ~s~~wlv~~y~l~-~lgEl~~~~~gle~~~~~aP~~~ 382 (478)
.++.-+.+.++.+ ++.|-.+......|..+..|+-+
T Consensus 184 ~~~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 184 VTIPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 2233356677786 99999999999999999998865
No 255
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=59.86 E-value=2.5e+02 Score=30.11 Aligned_cols=296 Identities=11% Similarity=-0.025 Sum_probs=0.0
Q ss_pred chhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE-------eeccch-----hHhHHHHHHHHHHHHHHH
Q 011747 59 PFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ-------DSVSWV-----IGFGIPTVLMIGAIILFL 126 (478)
Q Consensus 59 ~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~-------~~~g~~-----~~F~i~~v~m~~~liifl 126 (478)
++..|.++.+ +-+|+|..++.+-|+|.++++.++.++. ...+-+ ..+.+.++...+.+.++.
T Consensus 152 ~fandi~t~~------qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 225 (472)
T TIGR00769 152 GFANQITTID------EAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYW 225 (472)
T ss_pred HHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcccceeeeCC---------CCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhhhhh
Q 011747 127 VGKKLYVLVEP---------EGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAA 197 (478)
Q Consensus 127 ~g~~~~~~~~p---------~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 197 (478)
.-.+.-..++. +.+|-.....-++...+.+.
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~~S~y---------------------------------------- 265 (472)
T TIGR00769 226 WVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFLVSSPY---------------------------------------- 265 (472)
T ss_pred HHHhcccCCccccchhhccccCCCCCCHHHHHHHHHhCHH----------------------------------------
Q ss_pred hhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCcccch
Q 011747 198 MIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGV 277 (478)
Q Consensus 198 ~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~~~~~ 277 (478)
+.-+.+..+.|..+.+-....|-.+......+-. ...-=-+.++.
T Consensus 266 ----------------------------------L~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~-~~~~f~g~~~~ 310 (472)
T TIGR00769 266 ----------------------------------ILDLALLVIAYGISINLVEVTWKSKLKAQYPSPN-EYSAFMGDFST 310 (472)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH--H
Q 011747 278 ISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP--Q 355 (478)
Q Consensus 278 ~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~--~ 355 (478)
.-.+..++++.+..+++ +|++-. ...-=.-+-+++++++|+...+-+.........-+..+......+- |
T Consensus 311 ~~gi~tl~~~l~~~~l~----~~~Gw~----~~a~i~Pii~lit~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~~g~~~ 382 (472)
T TIGR00769 311 WTGVVSVTMMLLSGNVI----RKYGWL----TAALITPLVMLLTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVYVGAIQ 382 (472)
T ss_pred HHHHHHHHHHHHHHHHH----HHhhHH----HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccChHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhh-HHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHH
Q 011747 356 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFG-FASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFY 434 (478)
Q Consensus 356 y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a-~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f 434 (478)
.++.-.++--+.-.+-|..|..-++..|...-+..=.... +|-..|+.+.......- +..+.--
T Consensus 383 ~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~l~~~~---------------~~~~~~~ 447 (472)
T TIGR00769 383 NILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQGLLVIF---------------GSLAAST 447 (472)
T ss_pred HHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHHHHH---------------HHhhhhh
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc
Q 011747 435 FLIAGLGGLNIVYFLYCARRYRYK 458 (478)
Q Consensus 435 ~~la~l~~v~~vif~~~~~~~~~~ 458 (478)
-.++++.++..++.....+++.++
T Consensus 448 ~~~~~i~~~i~~~Wi~~v~~L~~~ 471 (472)
T TIGR00769 448 PYLAVILLIIVTAWLAAAKSLNKE 471 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
No 256
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=59.11 E-value=1.5e+02 Score=28.17 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcch----HHHHH
Q 011747 278 ISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVS----VFWLA 353 (478)
Q Consensus 278 ~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s----~~wlv 353 (478)
.|.+.+.+..+...+.+++..+|.+. +....-+..|++-..++.+..++ |.-. ....+..+-..+ .....
T Consensus 110 ~N~l~m~~~~~~~~~~~~~~~~~~~l----~~~v~~f~~gf~~~~l~~~~~~~-~l~l-~~~~~~~~~~~~~~~~~~~~~ 183 (214)
T TIGR00123 110 ANGFSMGVIGPFVGWIVYKLACRAGL----RRDVAVFLAAMLGDLATYVVTSV-QLAL-AFPIPHAGFTGSVVKFMGIFA 183 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHHHHH-HHHH-hCCCcccchHHHHHHHHHHHH
Confidence 36666666677778888887766421 11122223333333333222221 1110 000000000011 33344
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhh
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHM 382 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ 382 (478)
+.++.+++.|-.+......+..+..|+-.
T Consensus 184 ~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 184 YTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 66678899999999999999999999854
No 257
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=56.18 E-value=25 Score=36.54 Aligned_cols=93 Identities=12% Similarity=0.117 Sum_probs=59.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchH-HHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH
Q 011747 311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSV-FWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL 389 (478)
Q Consensus 311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~-~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl 389 (478)
+.|++.|..-+++-+..-.+. ..+|..+... ...+.+|.+.+.----..+++++|.++.||+...|++|.+
T Consensus 338 ~~R~~~~~~~t~Lv~~~~~~~--------~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTl 409 (510)
T KOG3574|consen 338 PYRLGGGLVQTALVWWTPTLG--------HSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTL 409 (510)
T ss_pred hHHHHHHHHHHHHHhhhcccc--------cCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHH
Confidence 356776666555544332211 1123223322 2344578888888778889999999999999999999999
Q ss_pred HHHHhhHHH-HHHHHHHHHhhcc
Q 011747 390 LFCSFGFAS-YLSSLLITIVHGV 411 (478)
Q Consensus 390 ~~l~~a~g~-~l~~~l~~~~~~~ 411 (478)
-.....+|. .-+.++..+.+..
T Consensus 410 LNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 410 LNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHHhcCCcHHHHHHHhcccC
Confidence 886665554 4444444444433
No 258
>PRK08319 cobalt transport protein CbiM; Validated
Probab=54.38 E-value=1.9e+02 Score=27.55 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHH
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKS 384 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks 384 (478)
.+.++.+++.|.++......+..+.-|+-.+.
T Consensus 183 ~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l~t 214 (224)
T PRK08319 183 AVTQIPLAIAEGLLTVLIFNYLTKYRPDLLVK 214 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHhh
Confidence 46668899999999999999999999987753
No 259
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=54.21 E-value=2.9e+02 Score=29.20 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=72.0
Q ss_pred cCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhH-HHHHHHHHHHHHHHHHhhhhhhhhccCCC-Ccc
Q 011747 270 IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIG-IGMIFSILSMIVAGLVERGRRASAHLHPM-SQV 347 (478)
Q Consensus 270 ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~-iG~~l~~ls~~~~~~~~~~~~~~~~~~g~-~~~ 347 (478)
+++..+..+-.+..+.- +.+.+++|.+.|+. .+. |-| +|+.. =.+++..+.+.... ...+ ..+
T Consensus 290 ~s~~~igi~R~~gav~G--l~gT~~~p~l~~ri------Glv-r~G~~~l~~-q~~~L~~~v~~~~~-----~~~~~~~~ 354 (432)
T PF06963_consen 290 YSPSVIGIFRGLGAVFG--LLGTWVYPWLMKRI------GLV-RAGLWSLWW-QWVCLALCVVSFWA-----PGSPFSSI 354 (432)
T ss_pred CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh------cch-hhHHHHHHH-HHHHHHHHHHHHhc-----CCCCchhh
Confidence 56666665555554432 56778888887653 223 333 33332 23333333332211 0011 234
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~ 410 (478)
+..-++...++-=+|=-....+....+=+..|++.||...|.-.....+-..+.-.++-.+.+
T Consensus 355 s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~ 417 (432)
T PF06963_consen 355 SAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR 417 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 555555444444455555556666666678999999999999888888888887666544443
No 260
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=52.40 E-value=2.1e+02 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHH-HHHHHHHhhhHHHHHHhhcChhh
Q 011747 348 SVFWLAPQLILM-GFCEAFNIIGQIEFFNKQFPDHM 382 (478)
Q Consensus 348 s~~wlv~~y~l~-~lgEl~~~~~gle~~~~~aP~~~ 382 (478)
+..-+.+.++.+ ++.|-++.....++..+..|+.+
T Consensus 182 ~~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~ 217 (230)
T PRK11909 182 SIPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENL 217 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 345566778887 99999999999999999866654
No 261
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=50.10 E-value=55 Score=34.95 Aligned_cols=148 Identities=16% Similarity=0.239 Sum_probs=90.2
Q ss_pred cCCcccchhHHHH---HHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCc
Q 011747 270 IPPGTVGVISMIT---IGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ 346 (478)
Q Consensus 270 ip~~~~~~~n~~~---iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~ 346 (478)
.|+...+.+|.+. .++-+-++.+. ..|+++| +-++.-++++.+|-++.+.... + ..+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~l----gD~~GRK-------~vYG~~liImIi~t~~~~~s~~--------~-~~~ 140 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWL----GDKFGRK-------KVYGKELIIMIICSALSGLSVG--------T-TSP 140 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH----Hhhhcch-------hhhhHHHHHHHHHHHHhccCCC--------C-CCC
Confidence 7888877777754 44455555543 2344321 1234445555554442221110 0 112
Q ss_pred ch-HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCC
Q 011747 347 VS-VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDI 425 (478)
Q Consensus 347 ~s-~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~l 425 (478)
.+ .+|+..-=+++|+|=--=+|.+-......|-++-||..+++.+...++|-..|+.+...+-.. +...+
T Consensus 141 ~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~---------fe~~~ 211 (538)
T KOG0252|consen 141 LGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAI---------FEKIF 211 (538)
T ss_pred cchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHH---------HhccC
Confidence 23 366777779999987777888888889999999999999999999999988877665443211 11112
Q ss_pred CC----cchHHHHHHHHHHHHHHHH
Q 011747 426 DA----GRLDYFYFLIAGLGGLNIV 446 (478)
Q Consensus 426 n~----~~~~~~f~~la~l~~v~~v 446 (478)
|+ .|++..|-+.-.++++-.+
T Consensus 212 ~~~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 212 NGPSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHH
Confidence 22 2678888776666655544
No 262
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=49.46 E-value=1.1e+02 Score=32.10 Aligned_cols=167 Identities=13% Similarity=0.123 Sum_probs=77.0
Q ss_pred HHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCc-ch--HHHHHHHHHH
Q 011747 282 TIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ-VS--VFWLAPQLIL 358 (478)
Q Consensus 282 ~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~-~s--~~wlv~~y~l 358 (478)
.=++-.|++|.+.. ||++++ +..=.+....+|+++..+|..+--.+ ..+|..+ ++ .||+.+.-++
T Consensus 79 LKllWaPiVDs~y~---k~~Grr-ksWvvp~q~llG~~mllLs~~v~~~~--------g~ng~~p~v~~lt~~f~LLnfl 146 (510)
T KOG3574|consen 79 LKLLWAPIVDSVYS---KRFGRR-KSWVVPCQYLLGLFMLLLSYLVDRGL--------GGNGGLPNVVALTLLFLLLNFL 146 (510)
T ss_pred HHHHHHhhhHHHHH---Hhhccc-cceeeehHHHHHHHHHHHhhCCCccc--------ccCCCCcchHHHHHHHHHHHHH
Confidence 45678899998653 454433 23445667888888877776432111 1122111 22 2343444344
Q ss_pred HHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCccc-ccCCCCcc--hHHHHH
Q 011747 359 MGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWL-TNDIDAGR--LDYFYF 435 (478)
Q Consensus 359 ~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~-~~~ln~~~--~~~~f~ 435 (478)
-+.=++-+.--++.. ++|++. |-.....-.....|.++|..+.-.....+. ++.++ .-+.|+|- +..|++
T Consensus 147 aAtQDIAVDgwALtm---Ls~e~l-gyaST~q~Vg~~~GyfL~~~ifLaL~s~dF---~N~y~rs~P~~~g~ItL~gy~~ 219 (510)
T KOG3574|consen 147 AATQDIAVDGWALTM---LSRENL-GYASTCQSVGQTAGYFLGNVVFLALESPDF---CNTYLRSIPLDQGFITLAGYLW 219 (510)
T ss_pred HhhhhhhhhHHHHHh---cCHhhc-CchhHHHHHHHhhhHHhhcceeeEecChhh---hhHHHhcCcCccceEEhhHHHH
Confidence 444444444333332 344433 333333335556666666543321221100 00000 00123332 344666
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCcccccCcccc
Q 011747 436 LIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLEL 472 (478)
Q Consensus 436 ~la~l~~v~~vif~~~~~~~~~~~~~~~~~~~~~~~~ 472 (478)
.-|.+.+++...-.+ -+++.+++++|||.+..
T Consensus 220 fwg~~~~vat~Lv~~-----~kke~~~~~~~e~~~~i 251 (510)
T KOG3574|consen 220 FWGALFIVATTLVAL-----LKKENDESVDEELELGI 251 (510)
T ss_pred HHHHHHHHHHHHHHH-----hcCCCchhhhhhhhcCH
Confidence 666666666554433 24455555666666543
No 263
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=47.40 E-value=97 Score=33.24 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=87.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChh--hHHHHHH
Q 011747 311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH--MKSIANS 388 (478)
Q Consensus 311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~--~ks~~~g 388 (478)
-+-+..|-++..++.++++..+. .+...+....+++++|--++-|...++..++=|+. -|-...+
T Consensus 92 ~~tI~lGail~~iGh~~L~~~~~-------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt 158 (498)
T COG3104 92 RRTIVLGAILMAIGHLVLAISSV-------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFT 158 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc-------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCcc
Confidence 45678899999988887765430 12233556677777888888888888887764442 1556677
Q ss_pred HHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCCc
Q 011747 389 LLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQS 463 (478)
Q Consensus 389 l~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~ 463 (478)
+++....+|+.+++.+.+.+... .+ ...-|.+-++-+...+++|+...|+++....+.+
T Consensus 159 ~fY~~iNiGsl~~p~i~~~~~~~-------------~g---~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~ 217 (498)
T COG3104 159 LFYMGINIGSLIAPIITGLLAIN-------------YG---WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPD 217 (498)
T ss_pred EEEEEeehHHHHHHHHHHHHHHh-------------hC---HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCC
Confidence 88888899999999988766531 11 2345677788888888889888888876654433
No 264
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=45.42 E-value=16 Score=38.71 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=58.9
Q ss_pred HHHHhccCCcc--------cccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHH
Q 011747 45 LLSIGTGGIRP--------CSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTV 116 (478)
Q Consensus 45 lia~G~G~~kp--------ni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v 116 (478)
++..|.|++-- -++.+.+..|-..+.++-+--+..=+.-+.+-|+|.++|.+.-||++|.+|-.-.++.+.+
T Consensus 43 i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~li 122 (538)
T KOG0252|consen 43 IIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELI 122 (538)
T ss_pred HHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHH
Confidence 44555555532 3556677777766532222334444567899999999999999999999999999999999
Q ss_pred HHHHHHH
Q 011747 117 LMIGAII 123 (478)
Q Consensus 117 ~m~~~li 123 (478)
.|+++.+
T Consensus 123 ImIi~t~ 129 (538)
T KOG0252|consen 123 IMIICSA 129 (538)
T ss_pred HHHHHHH
Confidence 9999998
No 265
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=45.35 E-value=7 Score=39.11 Aligned_cols=82 Identities=13% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHH
Q 011747 357 ILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFL 436 (478)
Q Consensus 357 ~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~ 436 (478)
++.+.+-.+.....+.++...-|+..++.+.| ..++|.+.++.+-.+ .+..++.+.+ ...||.+
T Consensus 5 ~~~~~~~~~~q~s~~glas~~p~~y~~a~~~G---------q~~aGv~~s~l~ii~------~~~~~~~~~~-a~~yF~~ 68 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASLFPPKYTQAVMIG---------QGLAGVIVSLLRIIT------KASGSDVKTS-AFIYFII 68 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhcCCHHHHHHHHhh---------ccHHHHHHHHHHHHH------HHhhhccchh-hhhHHHH
Confidence 44555666666777777777766666555443 333333333333222 1122222222 2335655
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 011747 437 IAGLGGLNIVYFLYCARR 454 (478)
Q Consensus 437 la~l~~v~~vif~~~~~~ 454 (478)
-.++.++..+.|+.+.|.
T Consensus 69 a~~i~i~~~~~~~~l~~~ 86 (309)
T PF01733_consen 69 AVLIVILCIILYFILPRS 86 (309)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 555666666666655443
No 266
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=43.09 E-value=71 Score=32.81 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=10.4
Q ss_pred HHHHHhhHHH-H---HhhceeeeEEe
Q 011747 82 WYYTTFTVVI-L---ITQTVLVYIQD 103 (478)
Q Consensus 82 ~fY~~iNiGa-~---~~~~~~~~i~~ 103 (478)
++.+..++|. . .-|.+++|+..
T Consensus 53 ~~~~l~~iG~~~f~lmvpvlaayIa~ 78 (359)
T PRK10478 53 NLKKLFDIGVAGLTLMVPFLAAYIGY 78 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445663 2 22555566543
No 267
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=40.92 E-value=5e+02 Score=28.05 Aligned_cols=332 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccc------hh
Q 011747 36 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSW------VI 109 (478)
Q Consensus 36 ~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~------~~ 109 (478)
++.+.+++.+..+.+ ++.+.+ +-.|+|..|+.+.|++.+++..++.+..++-.. ..
T Consensus 160 WgslV~S~lFw~faN------------eitt~~------eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~ 221 (509)
T COG3202 160 WGSLVLSLLFWQFAN------------EITTIE------EAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDL 221 (509)
T ss_pred HHHHHHHHHHHHHHH------------HhhhHH------HhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccch
Q 011747 110 GFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQ 189 (478)
Q Consensus 110 ~F~i~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (478)
.+..-.+......++-...+++..+.-.+...+. ..+.+++..+.++
T Consensus 222 ~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~------~~~~~kk~~~k~k--------------------------- 268 (509)
T COG3202 222 LLQILFIVIVILGIIAILLYRYINRNVLTDPLFY------LRAKKKKKKKKLK--------------------------- 268 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh------HHHhccccccccc---------------------------
Q ss_pred hhhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhh---hHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCC
Q 011747 190 FRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIK---IIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGP 266 (478)
Q Consensus 190 ~~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~---ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~ 266 (478)
..-.|..|.+.+ +..+-+..+.|.++.+-....|-.|....-.+-.
T Consensus 269 ------------------------------~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~- 317 (509)
T COG3202 269 ------------------------------LGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTN- 317 (509)
T ss_pred ------------------------------CcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChh-
Q ss_pred CcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhc---cCC
Q 011747 267 KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAH---LHP 343 (478)
Q Consensus 267 g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~---~~g 343 (478)
--.+-+..++-.+-++..-+.-..-.-+.||++- ....----+=++++++.|...++.+......-. ..+
T Consensus 318 ---~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW----~~~AlitPiv~litg~lFF~~~~f~~~~~~~~~~~~~~~ 390 (509)
T COG3202 318 ---EYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGW----FTGALITPLVMLITGVLFFGFAFFNNSIGSIFGGILGSP 390 (509)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCC
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHh-----hHHHHHHHHHHHHhhcccccCCCC
Q 011747 344 MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSF-----GFASYLSSLLITIVHGVTARHGHP 418 (478)
Q Consensus 344 ~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~-----a~g~~l~~~l~~~~~~~~~~~~~~ 418 (478)
+--+-++-...|-++.=.+--...-..=|.++-.-.+.+|...-+..=... ++|+.....+-.+..
T Consensus 391 pl~L~v~iG~iqnvlsK~~KYslfD~tKEma~ipldpe~r~kgKAa~D~i~~k~GKSiGSli~~~~~~i~~--------- 461 (509)
T COG3202 391 PLVLAVYIGGIQNVLSKITKYSLFDATKEMAYIPLDPEYRTKGKAAVDVIGGKLGKSIGSLIQSLLFIIFP--------- 461 (509)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhhHHHcCcCCHhHHhhccchhhhhhhcccccHHHHHHHHHHheec---------
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCC-CcccccCcccccCCC
Q 011747 419 DWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGI-QSLEDQNDLELVDPT 476 (478)
Q Consensus 419 ~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 476 (478)
...+=-...+++++..++..+.-+..++.+++ +...|.|+-+.+|++
T Consensus 462 -----------~~~~~~~~~v~~~i~~ii~~~Wi~~v~~Lnk~Y~~~~~~~~~~~~~~~ 509 (509)
T COG3202 462 -----------TADVRAISPVLAVIFIIICVLWIYAVKYLNKEYQAAIQRNIKIDLDLF 509 (509)
T ss_pred -----------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
No 268
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=40.72 E-value=3.7e+02 Score=28.21 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=17.7
Q ss_pred cccchhHHHHHHHHHHHHhHHH
Q 011747 273 GTVGVISMITIGLWLPFYDTVL 294 (478)
Q Consensus 273 ~~~~~~n~~~iill~Pl~~~i~ 294 (478)
+.+-+.|+++-++++|++..+-
T Consensus 46 G~i~s~~~~~~l~~qp~~G~i~ 67 (412)
T PF01306_consen 46 GIIFSAGSLFALLAQPVYGFIS 67 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhc
Confidence 4567889999999999887754
No 269
>PRK06265 cobalt transport protein CbiM; Validated
Probab=40.28 E-value=2.8e+02 Score=25.82 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHH--HHHHH
Q 011747 279 SMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW--LAPQL 356 (478)
Q Consensus 279 n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~w--lv~~y 356 (478)
|.+...+-.++...+.++..||. + ..+...|++-..++....++......... +..+....+ .++.+
T Consensus 103 N~l~m~~p~~~~~~~~~~~~~~~------~--~~~~~~~f~~~~l~v~~~~l~~~~~l~l~---~~~~~~~~~~~~~~~~ 171 (199)
T PRK06265 103 NTLNMALPAVLAGYLFRKLLRRT------P--PPRGLAAFLAGALAVFLAALLCALELALS---GGFPFVPAAKLLGLAH 171 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc------c--chHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccccHHHHHHHHHHHH
Confidence 44444444444444444444332 1 25667777777777765554432111111 111112222 22455
Q ss_pred HHHHHHHHHHhhhHHHHHHhhcChhhH
Q 011747 357 ILMGFCEAFNIIGQIEFFNKQFPDHMK 383 (478)
Q Consensus 357 ~l~~lgEl~~~~~gle~~~~~aP~~~k 383 (478)
+.+++.|.++......+..+.-|+-.+
T Consensus 172 ~~l~~~Eg~ltg~~v~~l~~~rP~~l~ 198 (199)
T PRK06265 172 LPLMVIEGIITAFAVSFLARVRPELLK 198 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhcc
Confidence 667777999999999999999887554
No 270
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=39.68 E-value=58 Score=23.35 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhccccccCCCcccccC
Q 011747 440 LGGLNIVYFLYCARRYRYKSGIQSLEDQN 468 (478)
Q Consensus 440 l~~v~~vif~~~~~~~~~~~~~~~~~~~~ 468 (478)
++++.++..+-.+++|.||=..+..++++
T Consensus 12 v~~lLg~~I~~~~K~ygYkht~d~~e~~~ 40 (50)
T PF12606_consen 12 VMGLLGLSICTTLKAYGYKHTVDPLEDEP 40 (50)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCc
Confidence 33344445556789999888877644433
No 271
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=39.13 E-value=1.1e+02 Score=32.48 Aligned_cols=162 Identities=13% Similarity=0.034 Sum_probs=93.0
Q ss_pred hhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCcc---cchhHHHHHHHHHHHHhHHHHHHHhhhcC
Q 011747 227 KCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGT---VGVISMITIGLWLPFYDTVLVPALRKITK 303 (478)
Q Consensus 227 k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~~---~~~~n~~~iill~Pl~~~i~~p~~~r~~~ 303 (478)
.+++++.-+.+..=+.|+...+..|-+.+ .+| +|-+| .+-..|++=++.+|+....--.+-.|+++
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-------~lG----vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-------SLG----VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-------HcC----CCcccccccccccccccceeccccccccccccccccc
Confidence 34444555555556677776666555433 233 55544 34557778888888887766555556554
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCC---CCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCh
Q 011747 304 HEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHP---MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD 380 (478)
Q Consensus 304 ~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g---~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~ 380 (478)
+ +| =|..|-+...+++.........-.... ++. ..+-.+-..+..+.++-++-=++.-..=++..+.+-.
T Consensus 101 R----RP--fI~~~s~~i~~~l~Lig~aaDig~~lg-d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~ 173 (498)
T KOG0637|consen 101 R----RP--FILAGSLLIAVSLFLIGYAADIGLLLG-DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG 173 (498)
T ss_pred c----cc--hHHHhhHHHHHHHhhhhhHhhhhHHhc-CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC
Confidence 3 22 256666666666665444332111111 111 1223444445555666666545555566777777444
Q ss_pred -hhHHHHHHHHHHHhhHHHHHHHHHHH
Q 011747 381 -HMKSIANSLLFCSFGFASYLSSLLIT 406 (478)
Q Consensus 381 -~~ks~~~gl~~l~~a~g~~l~~~l~~ 406 (478)
..+.+..+.+-+..++||.+|-.+++
T Consensus 174 d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 174 DAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhhhhccchhHHHHHHhcceeeeeccc
Confidence 44434999999999999999876664
No 272
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=37.54 E-value=8.7 Score=40.01 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=50.7
Q ss_pred CCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHHHHHHHH
Q 011747 52 GIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 124 (478)
Q Consensus 52 ~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m~~~lii 124 (478)
+.-+....+.+|.|+.+ .|..+..+.+...++|+++++.+.+++.++.+-...|.+-++.++++.++
T Consensus 365 g~~~~~~~~~~ElfPt~------~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~ 431 (451)
T PF00083_consen 365 GWGPLPWIYTAELFPTK------VRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF 431 (451)
T ss_pred ccccccccccccccccc------ccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence 44566668889999865 48999999999999999999999899888777455666655555555544
No 273
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=36.63 E-value=5.4e+02 Score=27.22 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011747 317 GMIFSILSMIVAGLVERG 334 (478)
Q Consensus 317 G~~l~~ls~~~~~~~~~~ 334 (478)
|+++.++.|+...+.|..
T Consensus 301 giLFI~LTF~~fflfE~~ 318 (430)
T PF06123_consen 301 GILFIGLTFLAFFLFELL 318 (430)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777888877777764
No 274
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.41 E-value=37 Score=29.24 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 011747 433 FYFLIAGLGGLNIVYFLYCARRYRY 457 (478)
Q Consensus 433 ~f~~la~l~~v~~vif~~~~~~~~~ 457 (478)
-|.++|++.++.+++++++.|+.|+
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444334444444444443
No 275
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=36.02 E-value=5.3e+02 Score=27.02 Aligned_cols=73 Identities=8% Similarity=-0.047 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHH
Q 011747 311 LQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS 388 (478)
Q Consensus 311 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~g 388 (478)
..|++.++.+.++-+++....... + .+.+ .....+-.+..-++.+++.....-.-+-.+...-|+-.++++.|
T Consensus 84 ~~~~~~~l~~~~il~i~~l~~~~v--~--~~~~-~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G 156 (406)
T KOG1479|consen 84 RTRVGYLLSLIAILFIVTLDLALV--K--TDTW-TNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSG 156 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--c--cCCc-cchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhc
Confidence 456777766666554433222110 0 1111 01222223345567777777777777777777777777766655
No 276
>PF14007 YtpI: YtpI-like protein
Probab=35.32 E-value=24 Score=28.57 Aligned_cols=69 Identities=7% Similarity=0.126 Sum_probs=43.2
Q ss_pred cCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHHHHHHHHHHhcccceeeeCC
Q 011747 63 DQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEP 137 (478)
Q Consensus 63 dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m~~~liifl~g~~~~~~~~p 137 (478)
+++...|| .++...-==+.|.+|.++......-.-- .+=...+.++++.+++|+...+.|.|.|++-.|
T Consensus 18 k~~Rs~~p-----~~k~~~~aka~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 18 KYFRSKDP-----MEKKWYSAKANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHhhcCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 34555555 3444433445666777766433211101 344568889999999999999999888876554
No 277
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=34.23 E-value=1.7e+02 Score=28.58 Aligned_cols=19 Identities=16% Similarity=-0.006 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 011747 394 FGFASYLSSLLITIVHGVT 412 (478)
Q Consensus 394 ~a~g~~l~~~l~~~~~~~~ 412 (478)
.+++-.+||.++.++++.-
T Consensus 138 iaLaLILGGALGNLIDRl~ 156 (263)
T PRK14780 138 IPLLFLLFGGLGNIIDRSI 156 (263)
T ss_pred HHHHHHHHHHHhhHHHhhh
Confidence 4666777888888777654
No 278
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=33.88 E-value=2.2e+02 Score=30.38 Aligned_cols=20 Identities=0% Similarity=-0.024 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 011747 383 KSIANSLLFCSFGFASYLSS 402 (478)
Q Consensus 383 ks~~~gl~~l~~a~g~~l~~ 402 (478)
+|.+.++|++..+++.++--
T Consensus 222 ~G~lf~lYli~Ygi~RF~iE 241 (460)
T PRK13108 222 HGRLFGFYVAFYCAGRFCVE 241 (460)
T ss_pred CchHHHHHHHHHHHHHHHhh
Confidence 49999999999999998754
No 279
>PRK11715 inner membrane protein; Provisional
Probab=33.62 E-value=6e+02 Score=26.91 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHH-----------HHhhcChhhHH
Q 011747 316 IGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEF-----------FNKQFPDHMKS 384 (478)
Q Consensus 316 iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~-----------~~~~aP~~~ks 384 (478)
-|+++.++.|+...+.|...+. .++ + .||++.|++-++.+-..+++ +++.|...+-|
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~~--------~iH--p--iQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~ 373 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKKL--------RIH--P--VQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIG 373 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc--------eec--H--HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Confidence 3677888888888888864321 111 1 46666666665555544443 23344445555
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 011747 385 IANSLLFCSFGFASYLSSLLIT 406 (478)
Q Consensus 385 ~~~gl~~l~~a~g~~l~~~l~~ 406 (478)
.+.+.-+=.+--|..+++.+..
T Consensus 374 ~Y~~~vl~~~k~g~~~~~~L~~ 395 (436)
T PRK11715 374 FYLSAVLRSWKRGLLFAAALAA 395 (436)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 5544444333334444444433
No 280
>PRK15049 L-asparagine permease; Provisional
Probab=32.80 E-value=6.1e+02 Score=27.09 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=6.5
Q ss_pred hhhHHHHHHHhh
Q 011747 77 NSFFNWYYTTFT 88 (478)
Q Consensus 77 ~~~F~~fY~~iN 88 (478)
.-...|.||...
T Consensus 107 gf~~GW~~~l~~ 118 (499)
T PRK15049 107 AYVAGWMYFINW 118 (499)
T ss_pred HHHHHHHHHHHH
Confidence 344466676543
No 281
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=32.73 E-value=3.2e+02 Score=24.02 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 011747 347 VSVFWLAPQLILMGFCEAFNI 367 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~ 367 (478)
.+..|++.. +++-+.|++..
T Consensus 4 ~~~~wli~g-~~ll~~E~l~~ 23 (140)
T COG1585 4 GAWIWLILG-LLLLIAEILGP 23 (140)
T ss_pred hhHHHHHHH-HHHHHHHHhcc
Confidence 456677666 55556676653
No 282
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=31.59 E-value=1.5e+02 Score=30.19 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 011747 432 YFYFLIAGLGGLNIVYFLYCARRY 455 (478)
Q Consensus 432 ~~f~~la~l~~v~~vif~~~~~~~ 455 (478)
+.|++-.++.++..++|..-.++.
T Consensus 287 ~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 287 WLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHHHHHHHHhheEEccCCcc
Confidence 334433334444455555544444
No 283
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=29.96 E-value=34 Score=26.77 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=36.0
Q ss_pred hhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHHHHHHHHHHhcccce
Q 011747 77 NSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLY 132 (478)
Q Consensus 77 ~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m~~~liifl~g~~~~ 132 (478)
+.+-.++...+-+++++|. ++||+.+ +++..+.+-+++.++++++.+=-.+.|
T Consensus 7 ~~ae~l~~~il~~~~iisf-i~Gy~~q--~~~~~~~~~~~g~~~~~lv~vP~Wp~y 59 (76)
T PF06645_consen 7 RLAEKLMQYILIISAIISF-IVGYITQ--SFSYTFYIYGAGVVLTLLVVVPPWPFY 59 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHhheeCCcHhh
Confidence 4455566777778888775 6688876 566777777777888877765434444
No 284
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=29.11 E-value=7.5e+02 Score=26.61 Aligned_cols=54 Identities=11% Similarity=0.014 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhh----HHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 011747 357 ILMGFCEAFNIIG----QIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHG 410 (478)
Q Consensus 357 ~l~~lgEl~~~~~----gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~ 410 (478)
++--++|++.+.. --.|+.+....+.-.+..+++.+...+|..+||.+...+.+
T Consensus 148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556778886664 35788999988888999999999999999999988877765
No 285
>KOG3012 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.34 E-value=2.4e+02 Score=26.96 Aligned_cols=28 Identities=4% Similarity=-0.230 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChh
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDH 381 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~ 381 (478)
|+++++-..-++++.++.++++..++.+
T Consensus 82 PaFlVl~s~~l~vssi~~a~~~~ls~~g 109 (259)
T KOG3012|consen 82 PAFLVLLSLLLVVSSIGWAYVLDLSFIG 109 (259)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccchHh
Confidence 5556666666778888888888866543
No 286
>COG1263 PtsG Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]
Probab=27.88 E-value=7.1e+02 Score=25.94 Aligned_cols=78 Identities=5% Similarity=-0.184 Sum_probs=35.3
Q ss_pred HHhhHHHHHHHHHHHHhhcccccCCCCccc---ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcccccC
Q 011747 392 CSFGFASYLSSLLITIVHGVTARHGHPDWL---TNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQN 468 (478)
Q Consensus 392 l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~---~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~~~~~~ 468 (478)
...+++..+++.+..+.+-......+++-+ ....+.......|+...+-.+.+.+.+++...-.++++.+.+..||+
T Consensus 306 i~~~i~~g~~~~i~~~~~v~~~~~~~~Gli~~~~~~~~~~~~~~~~~~~~ig~~~a~i~~fvf~~li~~~~~~t~gr~~~ 385 (393)
T COG1263 306 IIHAIGAGLGGALAGLLGVKAGSTFSGGLIDFVLIFPLPLLGGNNLLVYVIGLVIAAVYYFVFTFLIGKFNLKTPGREDE 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccchhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccch
Confidence 344566667776666554322222222211 11110000011344444555555666666666666666654444444
Q ss_pred c
Q 011747 469 D 469 (478)
Q Consensus 469 ~ 469 (478)
|
T Consensus 386 ~ 386 (393)
T COG1263 386 E 386 (393)
T ss_pred h
Confidence 3
No 287
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=27.62 E-value=6.6e+02 Score=26.30 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
|+|......+..|+-.-..++-....+.++.|++.|-+.||.-..+-++|-.+++.++-.++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45555566777888888889999999999999999999999999999999999998876554
No 288
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=25.45 E-value=3.3e+02 Score=24.96 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCh-hhHHHHHHHHHH-HhhHHHHHHHHHHHHhh
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD-HMKSIANSLLFC-SFGFASYLSSLLITIVH 409 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~-~~ks~~~gl~~l-~~a~g~~l~~~l~~~~~ 409 (478)
+.++++...++.++++-...+.....+.+..|+ ..++...+.... ...+|..+++.+.....
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666778999999999999999999998 677888888777 46677777765554443
No 289
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=25.03 E-value=2.4e+02 Score=30.86 Aligned_cols=146 Identities=8% Similarity=0.010 Sum_probs=84.2
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHH--HHhhhhhhhhccCCCCcchHHHH
Q 011747 275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAG--LVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~--~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
..+++-..-|++-++..+++ +|.+. .+.=-+.-...+.=+..+|++.-. ++...... |...--+||-
T Consensus 411 ~~a~~~~gEI~~~ffs~klI----~kiGH--v~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilq-----git~aliWaa 479 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFKLI----EKIGH--VNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQ-----GITHALIWAA 479 (618)
T ss_pred hhhhhccchHHHHHHHHHHH----HHhcc--cceeeehhhHHHHHHHHHHHhcCchheeeHHHHH-----HHHHHHHHHH
Confidence 34444444444444444444 55542 123334455666667778886322 11111111 1011235665
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHH-HHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchH
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF-CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD 431 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~-l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~ 431 (478)
+..|+ -..+-...-.+++++++|++. +.-++|+++|+.+...+..-+ ..
T Consensus 480 ~~sY~-------------s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~t-----------------tf 529 (618)
T KOG3762|consen 480 IISYA-------------SHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGART-----------------TF 529 (618)
T ss_pred HHHHH-------------HhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHH-----------------HH
Confidence 55543 223345566789999999998 677999999999997665543 24
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 011747 432 YFYFLIAGLGGLNIVYFLYCARRYRYKSGI 461 (478)
Q Consensus 432 ~~f~~la~l~~v~~vif~~~~~~~~~~~~~ 461 (478)
..|.+...+.++..+.+=...++-...+++
T Consensus 530 ~~~giAcl~~l~~~~~iq~~l~~~~~i~~~ 559 (618)
T KOG3762|consen 530 RIFGIACLVTLALFISIQLLLKRRGFIKEQ 559 (618)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccccCcc
Confidence 677887777777777666666665554444
No 290
>KOG4536 consensus Predicted membrane protein [Function unknown]
Probab=24.80 E-value=6.9e+02 Score=24.75 Aligned_cols=104 Identities=16% Similarity=0.089 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCccccc--CCC
Q 011747 349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN--DID 426 (478)
Q Consensus 349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~--~ln 426 (478)
+.|.+.- ++..-+|+++-+-|++|-....-++.+-...+-+.++.+.. .+-..+-..+-+ +.|.+. |+|
T Consensus 116 vlW~i~~-fF~ls~el~~~v~glaFg~~~n~~Si~~aL~~T~liS~~~~-a~q~~le~~y~d-------~~~~pl~fdi~ 186 (347)
T KOG4536|consen 116 VLWNILT-FFTLSGELFLEVSGLAFGFQGNYASIAEALTRTFLISGAYS-ALQLLLEAIYLD-------GFGVPLFFDIN 186 (347)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhHHH-HHHHHHHheeec-------cccCceeeeec
Confidence 6888877 45567999999999999988776666544444443332221 222222222221 245554 333
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 011747 427 AGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQ 462 (478)
Q Consensus 427 ~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~ 462 (478)
+|...+||+...--++..-.|.++.++|..|.|++
T Consensus 187 -~~gg~~fWl~ss~~l~Lvy~~~milp~~~~k~r~k 221 (347)
T KOG4536|consen 187 -EHGGRFFWLWSSHKLLLVYSYGMILPMYNSKWREK 221 (347)
T ss_pred -ccCcEEEehHHHHHHHHHHHHHheeeccchhhhhc
Confidence 34445666554444444446667777777766664
No 291
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=22.69 E-value=31 Score=32.51 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=29.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccc---ccCcccccCCC
Q 011747 425 IDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLE---DQNDLELVDPT 476 (478)
Q Consensus 425 ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 476 (478)
.++.+...++..+|+.+.|.++||+.+.-||.+......+- .++.-|++.|.
T Consensus 32 ~~~d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~g~QagKqe~~e~~tPn 86 (221)
T PF08374_consen 32 RSKDYVKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKKGYQAGKQENSEWVTPN 86 (221)
T ss_pred ccccceeeeeeeecchhhhHHHHHHHHHHHHHhhccccchhhhcccccccccCCC
Confidence 33344556777788888888888877666654422222222 22245677763
No 292
>PRK10692 hypothetical protein; Provisional
Probab=22.61 E-value=4.1e+02 Score=21.39 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 011747 430 LDYFYFLIAGLGGLNIVYFLYCARRYRYKSGI 461 (478)
Q Consensus 430 ~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~ 461 (478)
+..|+.-.+.+++..+.+.+++--|...|++.
T Consensus 38 Lp~~~~~gal~~IFiGAllWL~GArigGRE~V 69 (92)
T PRK10692 38 LPQFFAHGALLSIFVGALLWLAGARVGGREQV 69 (92)
T ss_pred chHHHHhhHHHHHHHHHHHHHhcccccCcchh
Confidence 34455556667777777777766555555443
No 293
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=22.59 E-value=9.8e+02 Score=25.73 Aligned_cols=29 Identities=7% Similarity=0.258 Sum_probs=24.5
Q ss_pred chhhhHHHHHHHhhHHHHHhhceeeeEEe
Q 011747 75 GINSFFNWYYTTFTVVILITQTVLVYIQD 103 (478)
Q Consensus 75 ~~~~~F~~fY~~iNiGa~~~~~~~~~i~~ 103 (478)
+-.|+|..+..+-|+|.+++..++.++.+
T Consensus 177 eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 177 EAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999877666654
No 294
>PF15069 FAM163: FAM163 family
Probab=21.72 E-value=1.1e+02 Score=27.10 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhccccccCCCcc-----cccCccc
Q 011747 439 GLGGLNIVYFLYCARRYRYKSGIQSL-----EDQNDLE 471 (478)
Q Consensus 439 ~l~~v~~vif~~~~~~~~~~~~~~~~-----~~~~~~~ 471 (478)
.|.+++.+.|-.+.+-.-+|+..+++ +||+|+.
T Consensus 18 LLcIIaVLCYCRLQYYCCKK~~se~~~~~~~eee~d~~ 55 (143)
T PF15069_consen 18 LLCIIAVLCYCRLQYYCCKKNESEEDEEEEEEEEPDFA 55 (143)
T ss_pred HHHHHHHHHHHhhHHHHhhccCCccccCcccccCCCCC
Confidence 45555556666655544455433333 5677763
No 295
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=21.62 E-value=98 Score=25.69 Aligned_cols=7 Identities=14% Similarity=0.999 Sum_probs=3.9
Q ss_pred HHHHHHH
Q 011747 431 DYFYFLI 437 (478)
Q Consensus 431 ~~~f~~l 437 (478)
.++||++
T Consensus 21 ~w~FWlv 27 (102)
T PF11669_consen 21 LWYFWLV 27 (102)
T ss_pred HHHHHHH
Confidence 3566664
No 296
>PRK11677 hypothetical protein; Provisional
Probab=20.77 E-value=40 Score=29.49 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccc
Q 011747 435 FLIAGLGGLNIVYFLYCARRYRYKS 459 (478)
Q Consensus 435 ~~la~l~~v~~vif~~~~~~~~~~~ 459 (478)
|++++++++.+++.-++..|+..+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccch
Confidence 4555566666655555555554444
No 297
>PRK10633 hypothetical protein; Provisional
Probab=20.11 E-value=1.8e+02 Score=23.08 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=18.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhhccccccCCCcccccC
Q 011747 431 DYFYFLIAGL-GGLNIVYFLYCARRYRYKSGIQSLEDQN 468 (478)
Q Consensus 431 ~~~f~~la~l-~~v~~vif~~~~~~~~~~~~~~~~~~~~ 468 (478)
.+|++.+-.. .+...++++++ |+-.|+-+-|++|+|
T Consensus 44 ~WF~~sCi~~p~lfi~l~~~~V--k~vFkDi~Ld~~~~~ 80 (80)
T PRK10633 44 HWFEMACLLLPLLFILLCWLMV--KFIFRDIPLEDDDAA 80 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCCCCccCC
Confidence 5566544333 33333344444 566666666655554
No 298
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=20.08 E-value=2e+02 Score=21.44 Aligned_cols=39 Identities=28% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCcccccCcccccCC
Q 011747 436 LIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQNDLELVDP 475 (478)
Q Consensus 436 ~la~l~~v~~vif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (478)
+++.++++ ++.+.--++-|..-+.+.-++|+.|-|-+-|
T Consensus 7 vialLC~a-Lva~vQ~APQYa~GeeP~YDEdd~dde~l~p 45 (65)
T PF10731_consen 7 VIALLCVA-LVAIVQSAPQYAPGEEPSYDEDDDDDEPLKP 45 (65)
T ss_pred HHHHHHHH-HHHHHhcCcccCCCCCCCcCcccCccccccc
Confidence 45555543 3447788899988888877777766655544
Done!