Query 011747
Match_columns 478
No_of_seqs 142 out of 1306
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 2.9E-23 1E-27 219.6 11.6 405 35-469 108-520 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 3.9E-19 1.3E-23 186.2 20.5 356 35-462 107-482 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.2 1.2E-10 4.1E-15 119.5 17.3 313 35-454 118-436 (451)
4 3o7q_A L-fucose-proton symport 98.8 3E-07 1E-11 93.7 19.8 87 34-126 115-227 (438)
5 2gfp_A EMRD, multidrug resista 98.4 8.8E-08 3E-12 96.0 4.0 83 35-123 87-169 (375)
6 4gc0_A D-xylose-proton symport 98.2 5.9E-06 2E-10 85.5 11.8 83 34-122 124-214 (491)
7 3o7q_A L-fucose-proton symport 98.1 0.00012 4.1E-09 74.2 18.6 112 275-409 66-177 (438)
8 1pw4_A Glycerol-3-phosphate tr 98.0 0.00015 5.1E-09 73.7 17.5 113 274-408 66-178 (451)
9 4aps_A DI-OR tripeptide H+ sym 97.9 0.00032 1.1E-08 72.5 18.1 142 274-457 58-202 (491)
10 2cfq_A Lactose permease; trans 97.9 2E-05 6.7E-10 80.5 8.4 87 349-451 312-399 (417)
11 2gfp_A EMRD, multidrug resista 97.6 0.00067 2.3E-08 67.3 13.4 109 275-409 40-148 (375)
12 2xut_A Proton/peptide symporte 97.5 0.0016 5.5E-08 67.7 15.2 113 313-455 87-202 (524)
13 4gc0_A D-xylose-proton symport 95.5 0.13 4.4E-06 52.5 13.5 63 347-409 124-186 (491)
14 2cfq_A Lactose permease; trans 90.5 0.029 1E-06 56.7 -1.7 82 40-127 316-398 (417)
15 2knc_A Integrin alpha-IIB; tra 48.7 21 0.00072 25.0 3.9 14 437-450 20-33 (54)
16 2ks1_B Epidermal growth factor 29.0 48 0.0016 22.1 3.0 22 437-458 21-42 (44)
17 2l2t_A Receptor tyrosine-prote 23.9 68 0.0023 21.4 3.0 16 442-457 25-40 (44)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=2.9e-23 Score=219.58 Aligned_cols=405 Identities=21% Similarity=0.290 Sum_probs=238.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.++|.|++.|+..++++|.+++++ +.+..+.|++++.+.|+|..+++.+.+++.+..||+..|.+.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 56778888899999999999999999999998653 123467889999999999999999999998888999999999
Q ss_pred HHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhhh
Q 011747 115 TVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN 194 (478)
Q Consensus 115 ~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (478)
++..+++.+.++..++.+.+.+|++++..+..+.+..+.+++.... . ... ...+..........+.+......+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGK-G---NIG-LVLALIGGVSAAYALVNIPTLGIVA 259 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTH-H---HHH-HHHHHHHHHHHHHTGGGTTTTCSSH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhccc-C---ccc-hhhhhhhhhhhhhhhcccchhhhhh
Confidence 9988888877766555444333433332222222222222211000 0 000 0000000000000000000000000
Q ss_pred hhhhhcccCCCCCCCCCCccc-------ccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCC
Q 011747 195 KAAMIVDNNELKPDGTPVNQW-------RLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPK 267 (478)
Q Consensus 195 ~a~~~~~~~~~~~~g~~~~~~-------~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g 267 (478)
.+....... .+.....+| +.++..+.+++|+.+..+++++....++..+.|..+.+..+...++.+.
T Consensus 260 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 333 (524)
T 2xut_A 260 GLCCAMVLV---MGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--- 333 (524)
T ss_dssp HHHHHHHHH---HHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---
T ss_pred hhhhhhhhh---hcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---
Confidence 000000000 000000011 0122234456777878888888888999999999888877776665432
Q ss_pred cccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcc
Q 011747 268 FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQV 347 (478)
Q Consensus 268 ~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~ 347 (478)
+ ++.+.+..++++..++..|+.+++.+|.++|+++ ++++.+++.+|+++.+++++..+..+..+. .....
T Consensus 334 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~ 403 (524)
T 2xut_A 334 W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWIVVGTIQLMMD------GGSAL 403 (524)
T ss_dssp S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT------TTCCC
T ss_pred e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCc
Confidence 2 4667788888899999999999988887776542 356778899999999998877665543211 11246
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCccccc-CCC
Q 011747 348 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN-DID 426 (478)
Q Consensus 348 s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~-~ln 426 (478)
+.+|+++.+++.++++.+..+...+++.+.+|++.||..+|++.+...+|+.+++.+.+.+.+.+ .++|.++ +++
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~----~~~~~~~~~~~ 479 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT----VTEQIVQTGMS 479 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH----HHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc----ccccccccccc
Confidence 78899999999999999999999999999999999999999999999999999999988765421 1124321 122
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcccccCc
Q 011747 427 AGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLEDQND 469 (478)
Q Consensus 427 ~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~~~~~~~~ 469 (478)
. ..+.|++.++++++..++++.+.+++++++++++++|+++
T Consensus 480 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (524)
T 2xut_A 480 V--TAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQATGSEN 520 (524)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred c--cccHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhcccc
Confidence 1 1223788888999988888888888887776655544433
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.82 E-value=3.9e-19 Score=186.18 Aligned_cols=356 Identities=14% Similarity=0.152 Sum_probs=231.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.++|.|...|+..++++|.+++++. +|..++++++.+.|+|..+++.+.+++.+..||++.|.++
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 456788888999999999999999999999987532 4778999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHhcccceeeeC--CCCCch--hhHHHHHHH--------------HHHhcccCCCCCCCCCCccccCCCC
Q 011747 115 TVLMIGAIILFLVGKKLYVLVE--PEGSIF--SGIGQVLVA--------------AYKKRRLTLPQGQMDHHGIFYDPPP 176 (478)
Q Consensus 115 ~v~m~~~liifl~g~~~~~~~~--p~g~pl--~~~~~vl~~--------------a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (478)
++..+++++.++..++.+..++ +..++. .+..+.... ....+.. . ++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~---~---------~~--- 247 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWN---S---------LP--- 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSC---C---------TT---
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCc---c---------cc---
Confidence 8888888877765443332211 111111 111110000 0000000 0 00
Q ss_pred cccccccCCccchh-hhhhhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHH
Q 011747 177 KLFVLSKLPLTHQF-RFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVS 255 (478)
Q Consensus 177 ~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~ 255 (478)
..... ............. ..|+. ......++++.....++++....+|..+.+..+.+..
T Consensus 248 ---------~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4aps_A 248 ---------AYINLLTIVAIAIPVFYFA---------WMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLAT 308 (491)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHH---------HHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHH
T ss_pred ---------cchhhhhHHHHHHHHHHHH---------HHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 00000 0000000000000 00000 0112245677778888998999999999999887766
Q ss_pred HHhh-hccCCCCCcccCCcccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 011747 256 QAMK-MNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERG 334 (478)
Q Consensus 256 qa~~-md~~~~~g~~ip~~~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~ 334 (478)
+..+ .+.+. .+.+.+..++.+..++..|+..++. +|.+++ .+....++.+|+++.+++++..+.....
T Consensus 309 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~----~r~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
T 4aps_A 309 FAAERVDSSW-----FPVSWFQSLNPLFIMLYTPFFAWLW----TAWKKN--QPSSPTKFAVGLMFAGLSFLLMAIPGAL 377 (491)
T ss_dssp HHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHHHHHHH----HHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHhccCc-----cCHHHHhccchHHHHHHHHHHHHHH----HHHhcc--CCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6543 33221 5677888999999999999888754 344332 2466788999999999998877766532
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccc
Q 011747 335 RRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTAR 414 (478)
Q Consensus 335 ~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~ 414 (478)
.. .....+.+|+++.+++.++++.+..+...+++.+..|++.||.++|++.....+|..+++.+.+.+.+.
T Consensus 378 ~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--- 448 (491)
T 4aps_A 378 YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--- 448 (491)
T ss_dssp CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS---
T ss_pred cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 10 123468899999999999999999999999999999999999999999999999999999887655431
Q ss_pred CCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 011747 415 HGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQ 462 (478)
Q Consensus 415 ~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~~~~~~~~ 462 (478)
.....|+.+++++++..++++.+.++.+++.+++
T Consensus 449 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (491)
T 4aps_A 449 --------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQGV 482 (491)
T ss_dssp --------------STTHHHHHTHHHHHHHHHHHHHC-----------
T ss_pred --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1235677888888888888887777776654443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.25 E-value=1.2e-10 Score=119.51 Aligned_cols=313 Identities=10% Similarity=-0.056 Sum_probs=173.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeecc-chhHhHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGI 113 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g-~~~~F~i 113 (478)
+.+.++++..+.++|.|...+...+++.|.++++ +|.++++++..+.++|.++++.+.+++.+..| |++.|.+
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4556778888999999999999999999999754 58999999999999999999998888767788 9999999
Q ss_pred HHHHHHHHHHHHHhcccceeeeCCCCCchhhHHHHHHHHHHhcccCCCCCCCCCCccccCCCCcccccccCCccchhhhh
Q 011747 114 PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL 193 (478)
Q Consensus 114 ~~v~m~~~liifl~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (478)
.++..++..++.+...+ ++|+... .. +. +. .+.+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~~----~~~~~~~---------------~~--~~---~~----~~~~~~~--------------- 228 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMR----DTPQSCG---------------LP--PI---EE----YKNDYPD--------------- 228 (451)
T ss_dssp HHHHHHHHHHHHHHHCC----CSSTTTC---------------CC--SC---TT----TCCC------------------
T ss_pred HHHHHHHHHHHHHhhcc----CCHhhcC---------------CC--Ch---hh----hcccccc---------------
Confidence 88776665554433221 1111100 00 00 00 0000000
Q ss_pred hhhhhhcccCCCCCCCCCCcccccccchhhhhhhhhhhhHHHHHhHHHHHHhhhcchhHHHHHHhhhccCCCCCcccCCc
Q 011747 194 NKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG 273 (478)
Q Consensus 194 ~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~ll~l~~~~~~f~~~~~Q~~t~~~~qa~~md~~~~~g~~ip~~ 273 (478)
+.. + +... ...+ ++....+..+-..+..+.+....++..+....+. ....+....+ .++.
T Consensus 229 ~~~------~---~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g----~~~~ 288 (451)
T 1pw4_A 229 DYN------E---KAEQ-ELTA---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW---SPTYLKEVKH----FALD 288 (451)
T ss_dssp --------------------CC---THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH---HHHHBTTBSC----CCHH
T ss_pred cch------h---hhhc-cccc---ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcC----CCHH
Confidence 000 0 0000 0000 0000001101111222222233333322222221 1222332222 2332
Q ss_pred ---ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHH-HHHHHHHHHhhhhhhhhccCCCCcchH
Q 011747 274 ---TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSI-LSMIVAGLVERGRRASAHLHPMSQVSV 349 (478)
Q Consensus 274 ---~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~-ls~~~~~~~~~~~~~~~~~~g~~~~s~ 349 (478)
.+.+...+..++..++..++ .+|..+ ...+.+.++.++.. ++++..... ...+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 346 (451)
T 1pw4_A 289 KSSWAYFLYEYAGIPGTLLCGWM----SDKVFR-----GNRGATGVFFMTLVTIATIVYWMN-------------PAGNP 346 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC-------------CTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh-------------cccCH
Confidence 33444444444444444433 233310 11122334444333 333322111 01356
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhH-HHHHHHHHHHHhhcccccCCCCcccccCCCCc
Q 011747 350 FWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGF-ASYLSSLLITIVHGVTARHGHPDWLTNDIDAG 428 (478)
Q Consensus 350 ~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~-g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~ 428 (478)
++.+...++.+++-....+....++.+..|++.++..+|++.....+ |..+++.+.+.+.+.. +
T Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g--------- 411 (451)
T 1pw4_A 347 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G--------- 411 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C---------
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C---------
Confidence 66677778888888888888889999999999999999999999998 9999998887655321 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhc
Q 011747 429 RLDYFYFLIAGLGGLNIVYFLYCARR 454 (478)
Q Consensus 429 ~~~~~f~~la~l~~v~~vif~~~~~~ 454 (478)
....|+..+++.++..++++...++
T Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 412 -WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445677777777777766655443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.78 E-value=3e-07 Score=93.70 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEE-eecc------
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ-DSVS------ 106 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~-~~~g------ 106 (478)
.+.+.++++..+.++|.|...+...++++|.++++ +|.++++++..+.++|.++++.+.+++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 45778888999999999999999999999999765 4788899999999999999999888876 5444
Q ss_pred -------------------chhHhHHHHHHHHHHHHHHH
Q 011747 107 -------------------WVIGFGIPTVLMIGAIILFL 126 (478)
Q Consensus 107 -------------------~~~~F~i~~v~m~~~liifl 126 (478)
|++.|.+.++...+..++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999776665555554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.43 E-value=8.8e-08 Score=95.95 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEeeccchhHhHHH
Q 011747 35 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 114 (478)
Q Consensus 35 ~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~ 114 (478)
+.+.++++..+.++|.|...+...++..|.++++ +|.++++++..+.++|..+++.+.+++.+..||+..|.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 5667777888899999999999999999998754 4788999999999999999999999998888999999987
Q ss_pred HHHHHHHHH
Q 011747 115 TVLMIGAII 123 (478)
Q Consensus 115 ~v~m~~~li 123 (478)
++..++..+
T Consensus 161 ~~~~~~~~~ 169 (375)
T 2gfp_A 161 LVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 776666554
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.21 E-value=5.9e-06 Score=85.55 Aligned_cols=83 Identities=13% Similarity=0.039 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHHHHHHhhHHHHHhhceeeeEEe--------ec
Q 011747 34 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD--------SV 105 (478)
Q Consensus 34 ~~~~~~~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~~~~~~~~~i~~--------~~ 105 (478)
.+.+.++++-.+.++|.|+.-+...++++|..+++ +|.+...++..++++|.+++..+...+.. ..
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 46788899999999999999999999999987653 57888888899999999888765443322 23
Q ss_pred cchhHhHHHHHHHHHHH
Q 011747 106 SWVIGFGIPTVLMIGAI 122 (478)
Q Consensus 106 g~~~~F~i~~v~m~~~l 122 (478)
+|++.+.+..+..++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 198 GWRYMFASECIPALLFL 214 (491)
T ss_dssp HHHHHHHTTHHHHHHHH
T ss_pred hhHHHhhhhhhhhhhhh
Confidence 46666665554444433
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.10 E-value=0.00012 Score=74.23 Aligned_cols=112 Identities=8% Similarity=-0.018 Sum_probs=84.3
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747 275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP 354 (478)
Q Consensus 275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~ 354 (478)
+.+...+..++..|+...+. .|.+ .-+-+.+|.++.+++.+....... .-+.++++.
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~----dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~ 122 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILM----KKLS-------YKAGIITGLFLYALGAALFWPAAE------------IMNYTLFLV 122 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHH----HHSC-------HHHHHHHHHHHHHHHHHHHHHHHH------------TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHH----HHhc-------chHHHHHHHHHHHHHHHHHHhccc------------cccHHHHHH
Confidence 44455555555666655543 4543 223467788888777766543221 146777888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
..++.|++.-...+....++.+..|++.|+..+|++....++|..+++.++....
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887654
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.02 E-value=0.00015 Score=73.73 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=83.3
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 353 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv 353 (478)
++.+...+...+..|+...+ ..|+++ -+-+.+|.++.+++.+..++.... ..+.++++
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l----~dr~g~-------r~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~ 123 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSV----SDRSNP-------RVFLPAGLILAAAVMLFMGFVPWA-----------TSSIAVMF 123 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHSCH-------HHHHHHHHHHHHHHHHHHHHCHHH-----------HSSSSHHH
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHhcCc-------hHHHHHHHHHHHHHHHHHHhhhhc-----------cccHHHHH
Confidence 34455555555566655544 345432 234567778888877766653210 03456777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 011747 354 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 408 (478)
Q Consensus 354 ~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~ 408 (478)
...++.|++.-...+....++.+..|++.|+..+|++....++|..+++.+++..
T Consensus 124 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 124 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999998888654
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.92 E-value=0.00032 Score=72.46 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=97.0
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHhh-hcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHH
Q 011747 274 TVGVISMITIGLWLPFYDTVLVPALRK-ITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 352 (478)
Q Consensus 274 ~~~~~n~~~iill~Pl~~~i~~p~~~r-~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wl 352 (478)
++.+...+...+..|+..++. .| .++ -+-+.+|+++.+++.+..++. .+.+++
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~----dr~~g~-------r~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 111 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFVA----DRIIGA-------RPAVFWGGVLIMLGHIVLALP---------------FGASAL 111 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHTSCH-------HHHHHHHHHHHHHHHHHHHSC---------------CSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hccccc-------hHHHHHHHHHHHHHHHHHHHh---------------hhHHHH
Confidence 344555566666666665543 44 321 223566777776666544321 345667
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcChhh--HHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcch
Q 011747 353 APQLILMGFCEAFNIIGQIEFFNKQFPDHM--KSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRL 430 (478)
Q Consensus 353 v~~y~l~~lgEl~~~~~gle~~~~~aP~~~--ks~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~ 430 (478)
+...++.|+++-...+....++.+..|++. |+..++++.....+|..+++.+++.+.+.. +|
T Consensus 112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~---------- 175 (491)
T 4aps_A 112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY---------- 175 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH----------
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH----------
Confidence 788899999999999999999999999988 888888899999999999998887665321 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011747 431 DYFYFLIAGLGGLNIVYFLYCARRYRY 457 (478)
Q Consensus 431 ~~~f~~la~l~~v~~vif~~~~~~~~~ 457 (478)
..-|+..+++.++..++++...+++..
T Consensus 176 ~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 176 HVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 334555666666666666666555443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.90 E-value=2e-05 Score=80.50 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH-HHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCC
Q 011747 349 VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL-LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDA 427 (478)
Q Consensus 349 ~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl-~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~ 427 (478)
.++++...++.+++.....+....+..+..|++.||..+|+ +....++|+.+++.+.+...+..
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~--------------- 376 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--------------- 376 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------------
Confidence 44555555666777666666778899999999999999998 57777888888888876543210
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHh
Q 011747 428 GRLDYFYFLIAGLGGLNIVYFLYC 451 (478)
Q Consensus 428 ~~~~~~f~~la~l~~v~~vif~~~ 451 (478)
.....|...++++++..++.+..
T Consensus 377 -g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 377 -GFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -CcHHHHHHHHHHHHHHHHHHHhh
Confidence 12345666777777666655443
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.57 E-value=0.00067 Score=67.34 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=81.5
Q ss_pred cchhHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHH
Q 011747 275 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP 354 (478)
Q Consensus 275 ~~~~n~~~iill~Pl~~~i~~p~~~r~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~ 354 (478)
+.+...+..++..|+..++ .+|.++| +-+.+|.++.+++.+..+.. .+.++++.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~ 93 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPI----SDRVGRR-------PVILVGMSIFMLATLVAVTT---------------SSLTVLIA 93 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHH----HTTSCCC-------CCCHHHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHh---------------ccHHHHHH
Confidence 4455555555666655543 3555432 22457777777776655543 24566778
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 355 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 355 ~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
..++.+++.....+....++.+..|++.|+..+|++....++|..+++.+++...
T Consensus 94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999998887554
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.46 E-value=0.0016 Score=67.75 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHH---
Q 011747 313 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL--- 389 (478)
Q Consensus 313 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl--- 389 (478)
-+.+|.++.+++.+..++.. .+.++++...++.|+++....|...+++.+..|++.|+..+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 152 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFE--------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDM 152 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHH
Confidence 35667777777665544321 2567777888999999999999999999999999999877666
Q ss_pred HHHHhhHHHHHHHHHHHHhhcccccCCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011747 390 LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 455 (478)
Q Consensus 390 ~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~v~~vif~~~~~~~ 455 (478)
+.....+|..+++.+++.+.+.. +| ...|++.+++.++..++++...+++
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~~------g~----------~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 153 FYFTINFGSFFASLSMPLLLKNF------GA----------AVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHTS------CH----------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhccc------cH----------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888887776544210 12 3455666666666555554444433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=95.54 E-value=0.13 Score=52.52 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcChhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 011747 347 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 409 (478)
Q Consensus 347 ~s~~wlv~~y~l~~lgEl~~~~~gle~~~~~aP~~~ks~~~gl~~l~~a~g~~l~~~l~~~~~ 409 (478)
-+.+.++..-++.|+|+-...+.+..++.+.+|++.|+..++++.....+|..++..+.....
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 466778888999999999999999999999999999999999999999999998887775544
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=90.51 E-value=0.029 Score=56.67 Aligned_cols=82 Identities=7% Similarity=0.084 Sum_probs=58.4
Q ss_pred HHHHHHHHHhccCCcccccchhccCCCCCCcccccchhhhHHH-HHHHhhHHHHHhhceeeeEEeeccchhHhHHHHHHH
Q 011747 40 VMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW-YYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLM 118 (478)
Q Consensus 40 ~~~L~lia~G~G~~kpni~~~~~dq~~~~~~~~~~~~~~~F~~-fY~~iNiGa~~~~~~~~~i~~~~g~~~~F~i~~v~m 118 (478)
.+...+.+++.+.+-+...++..|.++++ .|.+++.+ +..+.++|+.++|.+.+++.+..||...|.+.++..
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~ 389 (417)
T 2cfq_A 316 VILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHH
Confidence 33333445555544455567777777643 46677877 466777999999999999888889999999888887
Q ss_pred HHHHHHHHh
Q 011747 119 IGAIILFLV 127 (478)
Q Consensus 119 ~~~liifl~ 127 (478)
+++.++.+.
T Consensus 390 l~~~~~~~~ 398 (417)
T 2cfq_A 390 LGFTLISVF 398 (417)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 877776543
No 15
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=48.68 E-value=21 Score=25.01 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 011747 437 IAGLGGLNIVYFLY 450 (478)
Q Consensus 437 la~l~~v~~vif~~ 450 (478)
++++.++.++++.+
T Consensus 20 l~GLllL~li~~~L 33 (54)
T 2knc_A 20 LGGLLLLTILVLAM 33 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 16
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=29.03 E-value=48 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhhccccc
Q 011747 437 IAGLGGLNIVYFLYCARRYRYK 458 (478)
Q Consensus 437 la~l~~v~~vif~~~~~~~~~~ 458 (478)
++++.++.+.+++++.+|.+++
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHHHHHhhhhHhhc
Confidence 3344444455555555544433
No 17
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.87 E-value=68 Score=21.38 Aligned_cols=16 Identities=13% Similarity=0.278 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhhcccc
Q 011747 442 GLNIVYFLYCARRYRY 457 (478)
Q Consensus 442 ~v~~vif~~~~~~~~~ 457 (478)
++.+.+++++.+|.+.
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 4444455555444433
Done!