BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011748
(478 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUW0|LOX5_ARATH Linoleate 9S-lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana
GN=LOX5 PE=1 SV=2
Length = 886
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 22/108 (20%)
Query: 89 HIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIY 148
H Q + S T + D G + I N+W P+H+ SD F+ Y
Sbjct: 133 HHHSQFYLKSLTLRGFPDGEGGATAIHFIC------NSWIYPNHR--YRSDRVFFSNKAY 184
Query: 149 TPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDR 196
PSET ++ + +E L+ + G E+GG KE+DR
Sbjct: 185 LPSETPELI--------------KELREEELKNLRGNEKGGEFKEWDR 218
>sp|P41255|SYK_THETH Lysine--tRNA ligase OS=Thermus thermophilus GN=lysS PE=1 SV=1
Length = 492
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 2 AEPHKERNTEAPEPMARPVGGTEYSWCKAVPTGTGITVLALLLSKHPNIQ 51
A KE + EAPEP + EY A G GI LA+LL+ P+++
Sbjct: 424 ARRRKEGDEEAPEPDEDFLLALEYGMPPAAGLGLGIDRLAMLLTDQPSLR 473
>sp|Q5SJG7|SYK_THET8 Lysine--tRNA ligase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=lysS PE=3 SV=1
Length = 492
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 2 AEPHKERNTEAPEPMARPVGGTEYSWCKAVPTGTGITVLALLLSKHPNIQ 51
A KE + EAPEP + EY A G GI LA+LL+ P+++
Sbjct: 424 ARRRKEGDEEAPEPDEDFLLALEYGMPPAAGLGLGIDRLAMLLTDQPSLR 473
>sp|Q72JT9|SYK_THET2 Lysine--tRNA ligase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=lysS PE=3 SV=1
Length = 492
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 2 AEPHKERNTEAPEPMARPVGGTEYSWCKAVPTGTGITVLALLLSKHPNIQ 51
A KE + EAPEP + EY A G GI LA+LL+ P+++
Sbjct: 424 ARRRKEGDEEAPEPDEDFLLALEYGMPPAAGLGLGIDRLAMLLTDQPSLR 473
>sp|P23122|NIFV_AZOCH Homocitrate synthase OS=Azotobacter chroococcum mcd 1 GN=nifV PE=3
SV=1
Length = 382
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 218 WARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRD------ETGRLVEGCKSRG 271
W R D + L++ R + ++ VD P +LR +LNRD E RLV + G
Sbjct: 72 WCRLCD---FDLSAARSTGVTMVDLSLPISDLMLRHKLNRDRDWALGEVARLVSEARMAG 128
Query: 272 IKLC 275
+++C
Sbjct: 129 LEVC 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,952,941
Number of Sequences: 539616
Number of extensions: 7657440
Number of successful extensions: 20939
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 20921
Number of HSP's gapped (non-prelim): 23
length of query: 478
length of database: 191,569,459
effective HSP length: 121
effective length of query: 357
effective length of database: 126,275,923
effective search space: 45080504511
effective search space used: 45080504511
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)