Query 011748
Match_columns 478
No_of_seqs 148 out of 1339
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12467 peptide synthase; Pro 100.0 1.2E-35 2.7E-40 358.0 36.6 413 18-478 1117-1547(3956)
2 PRK12467 peptide synthase; Pro 100.0 1.3E-35 2.8E-40 357.8 34.9 415 18-478 50-486 (3956)
3 PRK10252 entF enterobactin syn 100.0 4.1E-35 8.9E-40 330.8 34.9 408 17-478 7-433 (1296)
4 PRK12316 peptide synthase; Pro 100.0 6.4E-35 1.4E-39 357.2 36.1 415 18-478 50-484 (5163)
5 PRK05691 peptide synthase; Val 100.0 2.5E-34 5.3E-39 349.7 33.8 415 18-478 1729-2161(4334)
6 PRK12316 peptide synthase; Pro 100.0 6.6E-34 1.4E-38 348.4 33.7 411 18-478 2603-3030(5163)
7 PRK05691 peptide synthase; Val 100.0 5.6E-33 1.2E-37 337.9 33.7 414 18-478 676-1106(4334)
8 PF07247 AATase: Alcohol acety 100.0 5.7E-31 1.2E-35 265.7 36.7 428 19-463 1-478 (480)
9 PRK09294 acyltransferase PapA5 100.0 8.1E-30 1.8E-34 252.6 36.9 393 13-468 3-408 (416)
10 PF00668 Condensation: Condens 100.0 8.7E-31 1.9E-35 248.9 14.8 279 19-335 6-301 (301)
11 TIGR02946 acyl_WS_DGAT acyltra 100.0 3.7E-27 7.9E-32 236.0 27.7 419 20-470 1-444 (446)
12 COG4908 Uncharacterized protei 99.9 9.1E-20 2E-24 166.8 27.4 399 39-469 28-437 (439)
13 TIGR03443 alpha_am_amid L-amin 99.4 6.8E-12 1.5E-16 143.3 21.3 206 217-478 1-210 (1389)
14 COG1020 EntF Non-ribosomal pep 99.2 1.3E-09 2.9E-14 114.8 18.4 202 255-477 1-203 (642)
15 PLN02481 Omega-hydroxypalmitat 99.1 6.6E-08 1.4E-12 96.4 26.1 272 49-354 63-344 (436)
16 PLN02663 hydroxycinnamoyl-CoA: 99.0 2.3E-07 5.1E-12 92.4 25.0 272 48-354 51-331 (431)
17 PLN03157 spermidine hydroxycin 99.0 1.7E-07 3.8E-12 93.7 24.0 269 50-354 54-339 (447)
18 PLN00140 alcohol acetyltransfe 98.9 2.1E-07 4.6E-12 92.8 23.0 260 50-354 58-328 (444)
19 PF03007 WES_acyltransf: Wax e 98.9 2.1E-08 4.6E-13 92.5 12.3 114 48-181 36-155 (263)
20 PF02458 Transferase: Transfer 98.9 2.1E-08 4.6E-13 100.3 13.2 268 50-353 55-332 (432)
21 PF07428 Tri3: 15-O-acetyltran 98.4 4.8E-06 1E-10 75.7 11.9 172 153-332 167-356 (413)
22 PF13745 HxxPF_rpt: HxxPF-repe 95.3 0.062 1.3E-06 40.4 6.2 33 425-457 59-91 (91)
23 TIGR02927 SucB_Actino 2-oxoglu 94.6 1.5 3.2E-05 45.6 15.9 34 436-469 550-583 (590)
24 PF00198 2-oxoacid_dh: 2-oxoac 94.3 2.1 4.6E-05 38.5 14.5 172 250-467 31-225 (231)
25 PRK14843 dihydrolipoamide acet 94.1 1.8 3.9E-05 41.6 14.2 32 436-467 310-341 (347)
26 COG4845 Chloramphenicol O-acet 94.0 0.58 1.2E-05 40.0 9.3 29 156-184 185-213 (219)
27 PLN02528 2-oxoisovalerate dehy 93.8 2.3 4.9E-05 42.1 14.6 32 436-467 376-407 (416)
28 PLN02226 2-oxoglutarate dehydr 93.7 3.1 6.8E-05 41.3 15.3 171 251-467 262-455 (463)
29 PF00302 CAT: Chloramphenicol 93.3 0.87 1.9E-05 40.1 9.8 24 155-178 182-205 (206)
30 TIGR01349 PDHac_trf_mito pyruv 93.3 3.4 7.4E-05 41.1 15.0 169 251-467 235-429 (435)
31 PRK13757 chloramphenicol acety 93.3 1.2 2.7E-05 39.5 10.7 30 155-184 185-214 (219)
32 PRK11857 dihydrolipoamide acet 93.0 3.8 8.3E-05 38.6 14.2 32 436-467 268-299 (306)
33 PF06974 DUF1298: Protein of u 92.9 3.8 8.3E-05 34.2 12.8 58 407-468 93-150 (153)
34 PRK05704 dihydrolipoamide succ 92.6 6.9 0.00015 38.6 16.0 172 251-467 206-399 (407)
35 TIGR01348 PDHac_trf_long pyruv 92.6 4.3 9.3E-05 41.8 15.1 31 436-466 509-539 (546)
36 PF01402 RHH_1: Ribbon-helix-h 92.2 0.51 1.1E-05 28.9 5.0 36 251-286 2-37 (39)
37 PTZ00144 dihydrolipoamide succ 92.1 6.9 0.00015 38.5 15.1 173 251-467 217-410 (418)
38 PLN02744 dihydrolipoyllysine-r 90.9 11 0.00025 38.4 15.5 31 436-466 502-532 (539)
39 TIGR01347 sucB 2-oxoglutarate 90.1 12 0.00025 36.9 14.6 32 436-467 364-395 (403)
40 PHA01623 hypothetical protein 89.7 1.6 3.4E-05 29.3 5.8 42 247-288 12-53 (56)
41 PRK11856 branched-chain alpha- 88.5 9 0.00019 38.0 12.8 30 438-467 375-404 (411)
42 PF03869 Arc: Arc-like DNA bin 87.1 2.8 6.1E-05 27.4 5.5 40 249-288 5-44 (50)
43 PF05534 HicB: HicB family; I 87.0 1.6 3.4E-05 28.7 4.3 33 249-281 18-50 (51)
44 PF12651 RHH_3: Ribbon-helix-h 84.8 4.8 0.0001 25.5 5.6 40 250-289 4-43 (44)
45 PHA01513 mnt Mnt 83.6 4 8.6E-05 29.6 5.3 39 250-288 7-45 (82)
46 PRK11675 LexA regulated protei 82.6 5 0.00011 29.7 5.6 38 249-286 51-88 (90)
47 PHA01748 hypothetical protein 81.0 7.1 0.00015 26.6 5.7 40 249-288 3-42 (60)
48 PRK11855 dihydrolipoamide acet 78.7 84 0.0018 32.6 15.3 32 436-467 510-541 (547)
49 TIGR01720 NRPS-para261 non-rib 76.3 10 0.00022 30.7 6.7 45 427-471 82-126 (153)
50 PF09274 ParG: ParG; InterPro 72.4 14 0.00031 26.3 5.3 41 245-285 31-71 (76)
51 PHA00617 ribbon-helix-helix do 71.3 20 0.00043 26.0 6.0 40 248-287 39-78 (80)
52 PRK11854 aceF pyruvate dehydro 69.7 1.6E+02 0.0034 31.3 15.7 32 436-467 596-627 (633)
53 PF04221 RelB: RelB antitoxin; 59.1 35 0.00075 25.0 5.6 39 249-287 2-40 (83)
54 PF14483 Cut8_M: Cut8 dimerisa 55.3 15 0.00033 22.4 2.5 26 47-72 9-34 (38)
55 PRK13877 conjugal transfer rel 54.3 37 0.00081 26.6 5.3 36 247-282 9-44 (114)
56 TIGR02384 RelB_DinJ addiction 53.3 45 0.00097 24.5 5.3 37 251-287 5-41 (83)
57 PRK11235 bifunctional antitoxi 52.6 55 0.0012 23.8 5.5 38 250-287 3-40 (80)
58 PRK12270 kgd alpha-ketoglutara 51.3 3.9E+02 0.0085 29.8 16.0 31 436-466 319-349 (1228)
59 PF08681 DUF1778: Protein of u 48.5 54 0.0012 23.8 5.1 38 251-288 2-39 (80)
60 PF10723 RepB-RCR_reg: Replica 44.4 70 0.0015 23.5 5.1 39 249-287 42-80 (84)
61 PRK13858 type IV secretion sys 43.8 60 0.0013 26.7 5.0 35 248-282 24-58 (147)
62 KOG0557 Dihydrolipoamide acety 43.5 3.5E+02 0.0075 27.0 11.7 32 435-466 432-463 (470)
63 PRK11856 branched-chain alpha- 43.3 20 0.00044 35.5 2.9 30 155-184 375-404 (411)
64 COG4226 HicB Predicted nucleas 41.2 1.2E+02 0.0025 23.4 5.8 38 249-286 71-108 (111)
65 PF13817 DDE_Tnp_IS66_C: IS66 40.5 53 0.0012 20.1 3.3 23 263-285 2-24 (39)
66 PRK11855 dihydrolipoamide acet 36.1 30 0.00064 35.8 2.9 30 155-184 512-541 (547)
67 PF13467 RHH_4: Ribbon-helix-h 34.7 84 0.0018 22.0 4.0 33 249-281 12-44 (67)
68 PF14492 EFG_II: Elongation Fa 33.8 63 0.0014 23.1 3.5 38 38-75 6-43 (75)
69 PF07683 CobW_C: Cobalamin syn 30.9 82 0.0018 23.3 3.9 33 38-72 2-34 (94)
70 PRK02289 4-oxalocrotonate taut 29.8 1.5E+02 0.0033 19.9 4.7 35 440-475 4-38 (60)
71 PF09498 DUF2388: Protein of u 24.2 80 0.0017 22.3 2.4 25 45-69 36-60 (72)
72 PF00198 2-oxoacid_dh: 2-oxoac 21.5 1.1E+02 0.0024 27.6 3.5 31 154-184 195-225 (231)
73 PRK11854 aceF pyruvate dehydro 20.9 82 0.0018 33.3 2.9 30 155-184 598-627 (633)
74 PF02037 SAP: SAP domain; Int 20.2 69 0.0015 18.9 1.3 18 259-276 5-22 (35)
No 1
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=1.2e-35 Score=358.02 Aligned_cols=413 Identities=14% Similarity=0.154 Sum_probs=282.9
Q ss_pred cCCCcc-cceeeeec-c--CCCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEe
Q 011748 18 RPVGGT-EYSWCKAV-P--TGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQ 93 (478)
Q Consensus 18 R~l~~~-e~~~~~~~-~--~~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (478)
-|+++. +..|+... . .+.|+....++++|.+|.++|++||+.+++|||+|||+|...++.+.+++.......+...
T Consensus 1117 ~PlS~~Q~~lw~~~~~~~~~~~Y~~~~~~~l~g~ld~~~L~~Al~~vv~rH~~LRT~f~~~~~~~~q~v~~~~~~~~~~~ 1196 (3956)
T PRK12467 1117 LPLSYAQERQWFLWQLEPGSAAYHIPQALRLKGPLDIEALERSFDALVARHESLRTTFVQEDGRTRQVIHPVGSLTLEEP 1196 (3956)
T ss_pred cccchHHHHHHHHHhhCCCCccceeeEEEEECCCcCHHHHHHHHHHHHHhCCcceEEEEccCCeEEEEECCCCCCceEEe
Confidence 366665 55576332 2 2336777899999999999999999999999999999998877666665544322233333
Q ss_pred ecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHH
Q 011748 94 HFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAA 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~ 173 (478)
++. ..+....++...++.+.. .+|++ .++|++|+.+++.+++++.+++++||+++||||+.+
T Consensus 1197 ~~~---------~~~~~~~~~~~~~~~~~~-----~~fdl----~~~pl~R~~l~~~~~~~~~l~l~~HHii~DG~S~~i 1258 (3956)
T PRK12467 1197 LLL---------AADKDEAQLKVYVEAEAR-----QPFDL----EQGPLLRVGLLRLAADEHVLVLTLHHIVSDGWSMQV 1258 (3956)
T ss_pred ecC---------cccchHHHHHHHHHHHhh-----CCCCC----CCCcceeEEEEEECCCeEEEEEecchhhhhHhHHHH
Confidence 331 111112234444444433 34555 789999999999888999999999999999999999
Q ss_pred HHHHHHHHhcCccCCCCccccccCCCCCcchhhcc-------CCC--CCCchhhhcchhhhhcccccCcccCCCCCCCC-
Q 011748 174 VSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFI-------PSG--KANKPFWARGVDMLGYSLNSLRLSNISFVDAD- 243 (478)
Q Consensus 174 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~- 243 (478)
|++||..+|.+...+.. ...+ ..+.++.++. ... .....||++.+.. ..+...+|...+.
T Consensus 1259 ll~el~~~Y~~~~~g~~-~~l~---~~~~~y~dy~~wq~~~l~~~~~~~~~~yW~~~L~~------~~~~~~lp~~~~~~ 1328 (3956)
T PRK12467 1259 LVDELVALYAAYSQGQS-LQLP---ALPIQYADYAVWQRQWMDAGERARQLAYWKAQLGG------EQPVLELPTDRPRP 1328 (3956)
T ss_pred HHHHHHHHHHHHhCCCC-CCCC---CCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHhcC------CCCcccCCCCCCCC
Confidence 99999999987554432 0011 1112333322 111 1245799988742 1122234433221
Q ss_pred --CCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCce
Q 011748 244 --SPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYL 321 (478)
Q Consensus 244 --~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~v 321 (478)
.........+.++++.+++|+++||++|+|++++++|||++++++|+ + ++++++|+|+++|.... . ++++
T Consensus 1329 ~~~~~~~~~~~~~l~~~~~~~L~~~a~~~~vT~~~vl~aA~a~lL~r~s--g---~~dvv~G~pvsgR~~~~--~-~~~v 1400 (3956)
T PRK12467 1329 AVQSHRGARLAFELPPALAEGLRALARREGVTLFMLLLASFQTLLHRYS--G---QDDIRVGVPIANRNRAE--T-EGLI 1400 (3956)
T ss_pred cccCcCceEEEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh--C---CCCEEEEecccCCCchh--h-hcce
Confidence 12344566789999999999999999999999999999999999987 5 67999999999998532 3 6799
Q ss_pred eeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCcc--c
Q 011748 322 GFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPI--V 399 (478)
Q Consensus 322 G~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~ 399 (478)
|+|+|++|+++++++..+|.++++++++++.+.+.|++.. +..+.......... ..+++|.+..++- .
T Consensus 1401 G~fvNtlplR~~~~~~~t~~~~l~~v~~~~~~a~~hq~~p-----~~~i~~~l~~~r~~-----~~~pLFq~~~~~~~~~ 1470 (3956)
T PRK12467 1401 GFFVNTQVLRAEVDGQASFQQLLQQVKQAALEAQAHQDLP-----FEQLVEALQPERSL-----SHSPLFQVMFNHQRDD 1470 (3956)
T ss_pred eeeeeeeEEEEecCCCCCHHHHHHHHHHHHHHHHhccCCC-----HHHHHHHhcccccC-----CCCCceeEEEEeeccc
Confidence 9999999999999999999999999999999999998742 22222221111111 1223444211110 0
Q ss_pred ccccccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 011748 400 DETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETGE 478 (478)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~ 478 (478)
.........+.++.+..... .....+.+.+...++++.+.+.|++++|+++++++++++|..+|++++.+|+.++++
T Consensus 1471 ~~~~~~~~~~~~~~~~~~~~--~~~~dL~l~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~ 1547 (3956)
T PRK12467 1471 HQAQAQLPGLSVESLSWESQ--TAQFDLTLDTYESSEGLQASLTYATDLFEASTIERLAGHWLNLLQGLVADPERRLGE 1547 (3956)
T ss_pred ccccccCCCceeEeeecCCc--ccccceEEEEEecCCeEEEEEEEeCCcCCHHHHHHHHHHHHHHHHHHhhCccCceee
Confidence 00001122344433321111 112345555555567899999999999999999999999999999999999998864
No 2
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=1.3e-35 Score=357.78 Aligned_cols=415 Identities=14% Similarity=0.165 Sum_probs=285.5
Q ss_pred cCCCcc-cceeeeecc-C--CCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEe
Q 011748 18 RPVGGT-EYSWCKAVP-T--GTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQ 93 (478)
Q Consensus 18 R~l~~~-e~~~~~~~~-~--~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (478)
-||++. +..|+.... + ..|+....++++|.+|.++|++||..+++|||+||++|...++++.+++.......+.+.
T Consensus 50 ~pLS~~Q~~lw~~~~~~~~~~~Yni~~~~~l~g~lD~~~L~~A~~~vv~rH~~LRt~f~~~~~~~~q~v~~~~~~~i~~~ 129 (3956)
T PRK12467 50 IPLSYAQERQWFLWQLDPDSAAYNIPTALRLRGELDVSALRRAFDALVARHESLRTRFVQDEEGFRQVIDASLSLTIPLD 129 (3956)
T ss_pred CCCCHHHHHHHHHHHhCCCCCceeccEEEEEeCCCCHHHHHHHHHHHHHHhhhheEEEEecCCeEEEEEcCCCCCceeEE
Confidence 478887 445764332 2 346777899999999999999999999999999999998777766666654433345555
Q ss_pred ecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHH
Q 011748 94 HFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAA 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~ 173 (478)
+++. .+.+.....+...+.++. ..+||+ .++|++|+.+++.+++++.+++++||+++||||+.+
T Consensus 130 d~~~-------~~~~~~~~~~~~~~~~~~-----~~~fdL----~~~pl~r~~l~~~~~~~~~l~l~~HHii~DG~S~~~ 193 (3956)
T PRK12467 130 DLAN-------EQGRARESQIEAYINEEV-----ARPFDL----ANGPLLRVRLLRLADDEHVLVVTLHHIISDGWSMRV 193 (3956)
T ss_pred eccc-------CChhhHHHHHHHHHHHHh-----cCCCCC----CCCCceEEEEEEECCCcEEEEEecCeeeEccchHHH
Confidence 5411 010111222334444443 345555 789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccCCCCccccccCCCCCcchhhcc-------C--CCCCCchhhhcchhhhhcccccCcccCCCCCCCC-
Q 011748 174 VSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFI-------P--SGKANKPFWARGVDMLGYSLNSLRLSNISFVDAD- 243 (478)
Q Consensus 174 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~- 243 (478)
|+++|.++|.+...+.. ...+ ..+.++.++. . .......||++.+.. ..+...+|...+.
T Consensus 194 l~~el~~~Y~~~~~g~~-~~~~---~~~~~y~dy~~~~~~~l~~~~~~~~~~yW~~~L~~------~~~~~~lp~~~~~~ 263 (3956)
T PRK12467 194 LVEELVQLYSAYSQGRE-PSLP---ALPIQYADYAIWQRSWLEAGERERQLAYWQEQLGG------EHTVLELPTDRPRP 263 (3956)
T ss_pred HHHHHHHHHHHHhcCCC-CCCC---CCCCCHHHHHHHHHHHhcChhhHHHHHHHHHHhcc------CCCcCCCCCCCCCC
Confidence 99999999987654432 0011 1111233321 1 112246799988842 1122234433211
Q ss_pred --CCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCce
Q 011748 244 --SPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYL 321 (478)
Q Consensus 244 --~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~v 321 (478)
.........+.|+++.+++|+++|+++|+|++++++|||+++|++++ + ++++.+|+|+++|.... . ++++
T Consensus 264 ~~~~~~~~~~~~~l~~~~~~~L~~~a~~~g~T~~~vl~aA~a~lL~r~t--g---~~dv~iG~pvsgR~~~~--~-~~~i 335 (3956)
T PRK12467 264 AVPSYRGARLRVDLPQALSAGLKALAQREGVTLFMVLLASFQTLLHRYS--G---QSDIRIGVPNANRNRVE--T-ERLI 335 (3956)
T ss_pred CCCCcCceeEEEeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--C---CCCEEEEeccCCCCchh--h-hcce
Confidence 12334566789999999999999999999999999999999999987 5 67999999999998643 2 6799
Q ss_pred eeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecC--ccc
Q 011748 322 GFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFED--PIV 399 (478)
Q Consensus 322 G~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 399 (478)
|+|+|++|+++++++..+|.++++++++++.+.+.|++.. +..+.......... ..+++|.+..+ +..
T Consensus 336 G~fiNtlplrv~~~~~~t~~~ll~~v~~~~~~a~~hq~~p-----~~~l~~~l~~~~~~-----~~~plf~~~~~~~~~~ 405 (3956)
T PRK12467 336 GFFVNTQVLKAEVDPQASFLELLQQVKRTALGAQAHQDLP-----FEQLVEALQPERSL-----SHSPLFQVMFNHQNTA 405 (3956)
T ss_pred eeeeeeeeeEeecCCCCCHHHHHHHHHHHHHHHHhcccCC-----HHHHHHHhCCCCCC-----CCCCceEEEEEeeccc
Confidence 9999999999999999999999999999999999998742 22222222111111 12234442111 110
Q ss_pred cc--c--cccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCC
Q 011748 400 DE--T--NKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGE 475 (478)
Q Consensus 400 ~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~ 475 (478)
.. . ....+.+.+..+.... ......+.+.+...++++.+.+.|++++|+++++++++++|..+|++++.+|+.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dL~l~v~~~~~~l~~~~~y~~~lf~~~~~~~~~~~~~~~l~~~~~~~~~~ 483 (3956)
T PRK12467 406 TGGRDREGAQLPGLTVEELSWAR--HTAQFDLALDTYESAQGLWAAFTYATDLFEATTIERLATHWRNLLEAIVAEPRRR 483 (3956)
T ss_pred ccccccccccCCCceEEEeecCC--CceeeeeEEEEEecCCcEEEEEEEecccCCHHHHHHHHHHHHHHHHHHhhCcccc
Confidence 00 0 1112233444332211 1112344555555567899999999999999999999999999999999999988
Q ss_pred CCC
Q 011748 476 TGE 478 (478)
Q Consensus 476 ~~~ 478 (478)
+++
T Consensus 484 i~~ 486 (3956)
T PRK12467 484 LGE 486 (3956)
T ss_pred eec
Confidence 874
No 3
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=100.00 E-value=4.1e-35 Score=330.80 Aligned_cols=408 Identities=13% Similarity=0.068 Sum_probs=271.3
Q ss_pred ccCCCcccc-eeeeecc-C--CCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCC-CCce
Q 011748 17 ARPVGGTEY-SWCKAVP-T--GTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPE-PHIQ 91 (478)
Q Consensus 17 ~R~l~~~e~-~~~~~~~-~--~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~-~~~~ 91 (478)
.-||+...+ .|+.... + ..++....++++|.+|.++|++||..+++|||+||++|...++++.+++..... +.+.
T Consensus 7 ~~Pls~~Q~~lw~~~~~~~~~~~yn~~~~~~l~g~ld~~~l~~Al~~lv~rh~~LRt~f~~~~g~~~q~v~~~~~~~~~~ 86 (1296)
T PRK10252 7 HLPLVAAQPGIWMAEKLSPLPSAWSVAHYVELTGELDAPLLARAVVAGLAEADTLRMRFTEDNGEVWQWVDPALTFPLPE 86 (1296)
T ss_pred CCCCCHHHHHHHHHHHhCCCCCceeeeEEEEEeCCCCHHHHHHHHHHHHHhccceEEEEEcCCCeEEEEECCCCCCCcCc
Confidence 347777744 4763322 2 236677889999999999999999999999999999999877666655543321 1234
Q ss_pred EeecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCC-CeEEEEEEecCCCceEEEEEecceecchhh
Q 011748 92 IQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDS-NLFNVSIYTPSETQWVVTLRLHTSICDRAS 170 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S 170 (478)
+.++ +...+....+.+.+.++.. .+||+ .++ |++|+.+++.+++++.|++++||+++||||
T Consensus 87 ~~d~---------~~~~~~~~~~~~~~~~~~~-----~~fdl----~~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S 148 (1296)
T PRK10252 87 IIDL---------RTQPDPHAAAQALMQADLQ-----QDLRV----DSGKPLVFHQLIQLGDNRWYWYQRYHHLLVDGFS 148 (1296)
T ss_pred eeec---------CCCCCHHHHHHHHHHHHhc-----CCcCC----CCCCCCeEEEEEEEcCCEEEEEEecCceeEcccc
Confidence 4444 1111112223344444433 34555 676 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCccccccCCCCCcchhh-------ccC--CCCCCchhhhcchhhhhcccccCcccCCCCCC
Q 011748 171 AAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEE-------FIP--SGKANKPFWARGVDMLGYSLNSLRLSNISFVD 241 (478)
Q Consensus 171 ~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~ 241 (478)
+.+|++||.++|.+...+.. ++ ..+..++.+ +.. .....+.||++.+... .....+|...
T Consensus 149 ~~~l~~el~~~Y~~~~~g~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~yW~~~L~~~------~~~~~l~~~~ 217 (1296)
T PRK10252 149 FPAITRRIAAIYCAWLRGEP---TP--ASPFTPFADVVEEYQRYRASEAWQRDAAFWAEQRRQL------PPPASLSPAP 217 (1296)
T ss_pred HHHHHHHHHHHHHHHhcCCC---CC--CCCCccHHHHHHHHHHHhhCchhhHHHHHHHHHhcCC------CCcccCCCCC
Confidence 99999999999987655532 11 111112211 111 1122567999888421 1112233222
Q ss_pred CC---CCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCC
Q 011748 242 AD---SPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSD 318 (478)
Q Consensus 242 ~~---~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~ 318 (478)
+. ...+.....+.++.+.+.++.+.|+ ++|++++++|||+++|++++ + ++++++|+|+++|..... .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~l~aa~~~lL~r~s--g---~~dv~ig~p~sgR~~~~~---~ 287 (1296)
T PRK10252 218 LPGRSASADILRLKLEFTDGAFRQLAAQAS--GVQRPDLALALVALWLGRLC--G---RMDYAAGFIFMRRLGSAA---L 287 (1296)
T ss_pred CCCccCCCcceeeeeecCHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHh--C---CCceEEEEEecCCCchhh---h
Confidence 11 1122334567899999999988665 78999999999999999987 5 679999999999976432 6
Q ss_pred CceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCcc
Q 011748 319 DYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPI 398 (478)
Q Consensus 319 ~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 398 (478)
+++|+|+|++|++++++++.+|.++++++++++.+.++|+... +..+........+ ..++...+++.. +
T Consensus 288 ~~vG~fvntlplr~~~~~~~tf~~~l~~~~~~~~~~~~h~~~p-----~~~i~~~l~~~~~---~~~lf~~~~~~~--~- 356 (1296)
T PRK10252 288 TATGPVLNVLPLRVHIAAQETLPELATRLAAQLKKMRRHQRYD-----AEQIVRDSGRAAG---DEPLFGPVLNIK--V- 356 (1296)
T ss_pred cCCCcccceEEEEEecCCCCCHHHHHHHHHHHHHHHHhhcCCC-----HHHHHHHhcCccC---CCCceeEEEEee--e-
Confidence 7999999999999999999999999999999999999998742 2222222111111 112222222210 0
Q ss_pred cccccccccceEEeeEEEEeecccccCeEEEEEE-EecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 011748 399 VDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDT-IRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETG 477 (478)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~~~ 477 (478)
+. .....+.+........ .. ....+.+.+. ..++++.+.+.|+.++|+++++++++++|..+|++++.+|+.+++
T Consensus 357 ~~-~~~~~~~~~~~~~~~~--~~-~~~dl~l~~~~~~~~~l~~~~~y~~~~f~~~~i~~l~~~~~~ll~~~~~~p~~~i~ 432 (1296)
T PRK10252 357 FD-YQLDFPGVQAQTHTLA--TG-PVNDLELALFPDEHGGLSIEILANPQRYDEATLIAHAERLKALIAQFAADPALLCG 432 (1296)
T ss_pred cc-cccCcCCccceeeecC--CC-ccCCeEEEEEECCCCcEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCCCCChh
Confidence 11 0111111111111100 00 1123444444 235789999999999999999999999999999999999998876
Q ss_pred C
Q 011748 478 E 478 (478)
Q Consensus 478 ~ 478 (478)
+
T Consensus 433 ~ 433 (1296)
T PRK10252 433 D 433 (1296)
T ss_pred h
Confidence 3
No 4
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=6.4e-35 Score=357.20 Aligned_cols=415 Identities=14% Similarity=0.144 Sum_probs=285.3
Q ss_pred cCCCcc-cceeeeecc-C--CCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEe
Q 011748 18 RPVGGT-EYSWCKAVP-T--GTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQ 93 (478)
Q Consensus 18 R~l~~~-e~~~~~~~~-~--~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (478)
-||+.. +..|+.... + ..|+....++|+|.+|.++|++||..+++|||+||++|...++++.+++.......+.+.
T Consensus 50 ~plS~~Q~~lw~~~~l~~~~~~yn~~~~~~i~g~ld~~~l~~A~~~vv~rHe~LRt~f~~~~~~~~q~v~~~~~~~~~~~ 129 (5163)
T PRK12316 50 DRLSYAQQRMWFLWQLEPQSGAYNLPSAVRLNGPLDRQALERAFASLVQRHETLRTVFPRGADDSLAQVPLDRPLEVEFE 129 (5163)
T ss_pred CCCCHHHHHHHHHHHhCCCCCcchhcEEEEEeCCCCHHHHHHHHHHHHHHhhhceEEEEeeCCeEEEEECCCCCCCccEE
Confidence 477776 555764322 2 346778899999999999999999999999999999999877766666544332244444
Q ss_pred ecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHH
Q 011748 94 HFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAA 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~ 173 (478)
++ +. ....+....+.+.... -...+|++ .++|++|+.+++.+++++.+++.+||+++||||+.+
T Consensus 130 d~---------~~--~~~~~~~~~~~~~~~~-~~~~pfdl----~~~pl~r~~l~~~~~~~~~l~l~~HHii~Dg~S~~~ 193 (5163)
T PRK12316 130 DC---------SG--LPEAEQEARLRDEAQR-ESLQPFDL----CEGPLLRVRLLRLGEEEHVLLLTLHHIVSDGWSMNV 193 (5163)
T ss_pred EC---------CC--CChhhHHHHHHHHHHH-hhcCCCCC----CCCCceEEEEEEECCCcEEEEEcccceeechhHHHH
Confidence 44 11 1112222223222211 12345565 789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccCCCCccccccCCCCCcchhhcc-------CC--CCCCchhhhcchhhhhcccccCcccCCCCCCC--
Q 011748 174 VSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFI-------PS--GKANKPFWARGVDMLGYSLNSLRLSNISFVDA-- 242 (478)
Q Consensus 174 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~-- 242 (478)
|+++|.++|.+...+.. ...+ +...++.++. .. ....+.||++.+.. ..+...+|...+
T Consensus 194 l~~el~~~Y~~~~~~~~-~~l~---~~~~~y~dy~~~q~~~~~~~~~~~~~~yW~~~l~~------~~~~~~lp~~~~~~ 263 (5163)
T PRK12316 194 LIEEFSRFYSAYATGAE-PGLP---ALPIQYADYALWQRSWLEAGEQERQLEYWRAQLGE------EHPVLELPTDHPRP 263 (5163)
T ss_pred HHHHHHHHHHHHhcCCC-CCCC---CCCCCHHHHHHHHHHHhcChhHHHHHHHHHHHhCC------CCccccCCCCCCCC
Confidence 99999999987655532 0011 1112333332 11 11246799988741 122223454332
Q ss_pred -CCCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCce
Q 011748 243 -DSPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYL 321 (478)
Q Consensus 243 -~~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~v 321 (478)
....+.....+.|+.+.+++|+++|+++|+|++++++|||++++++++ + ++++.+|+|+++|..... .+++
T Consensus 264 ~~~~~~~~~~~~~l~~~~~~~l~~~a~~~~~T~~~~llaa~a~lL~~~t--g---~~dv~ig~pvs~R~~~~~---~~~v 335 (5163)
T PRK12316 264 AVPSYRGSRYEFSIDPALAEALRGTARRQGLTLFMLLLGAFNVLLHRYS--G---QTDIRVGVPIANRNRAEV---EGLI 335 (5163)
T ss_pred CCCCcCCeeEEEecCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C---CCCeEEEeeeCCCCchhh---hcce
Confidence 122445667889999999999999999999999999999999999987 5 679999999999975332 6799
Q ss_pred eeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecC--cc-
Q 011748 322 GFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFED--PI- 398 (478)
Q Consensus 322 G~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~--~~- 398 (478)
|+|+|++|++++++++.+|.++++++++.+.+.++|+... +..+.... +... . ..++++|.+..+ +.
T Consensus 336 G~f~n~lplr~~~~~~~tf~~~l~~v~~~~~~a~~hq~~p-----~~~iv~~l-~~~r-~---~~~~plf~~~~~~~~~~ 405 (5163)
T PRK12316 336 GFFVNTQVLRSVFDGRTRVATLLAGVKDTVLGAQAHQDLP-----FERLVEAL-KVER-S---LSHSPLFQVMYNHQPLV 405 (5163)
T ss_pred eeeeeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccCC-----HHHHHHHh-CCCC-C---CCCCCcEEEEEEeeccc
Confidence 9999999999999999999999999999999999998742 22222222 1111 1 112344443211 10
Q ss_pred cc-cccccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 011748 399 VD-ETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETG 477 (478)
Q Consensus 399 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~~~ 477 (478)
.. ......+.+.+..+...... ....+.+.+...++++.+.+.|+.++|+++++++++++|..+|.+++.+|+.+++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~dL~l~v~~~~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~i~~~p~~~i~ 483 (5163)
T PRK12316 406 ADIEALDTVAGLEFGQLEWKSRT--TQFDLTLDTYEKGGRLHAALTYATDLFEARTVERMARHWQNLLRGMVENPQARVD 483 (5163)
T ss_pred ccccccccCCCceEEeeccCCCc--cceeEEEEEEEcCCcEEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 00 00111223344333221111 1223455555557899999999999999999999999999999999999998886
Q ss_pred C
Q 011748 478 E 478 (478)
Q Consensus 478 ~ 478 (478)
+
T Consensus 484 ~ 484 (5163)
T PRK12316 484 E 484 (5163)
T ss_pred c
Confidence 4
No 5
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=2.5e-34 Score=349.70 Aligned_cols=415 Identities=13% Similarity=0.143 Sum_probs=280.4
Q ss_pred cCCCcc-cceeeeec-cC--CCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEe
Q 011748 18 RPVGGT-EYSWCKAV-PT--GTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQ 93 (478)
Q Consensus 18 R~l~~~-e~~~~~~~-~~--~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (478)
-|+++. +..|+... .+ ..++....++++|.+|.++|++||+.+++|||+|||+|...++.+.+++.......+.+.
T Consensus 1729 ~pls~~Q~~l~~~~~~~~~~~~Yn~~~~~~l~g~ld~~~L~~A~~~lv~rH~~LRT~f~~~~~~~~q~v~~~~~~~~~~~ 1808 (4334)
T PRK05691 1729 VPLSYSQQRMWFLWQMEPDSPAYNVGGMARLSGVLDVDRFEAALQALILRHETLRTTFPSVDGVPVQQVAEDSGLRMDWQ 1808 (4334)
T ss_pred CCCCHHHHhHHHhhhccCCCcccceeeeehccCCCCHHHHHHHHHHHHHhCCcceEEEEccCCeEEEEECCCCCCCeeEe
Confidence 367776 44565332 22 236667789999999999999999999999999999999877766666544333345555
Q ss_pred ecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHH
Q 011748 94 HFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAA 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~ 173 (478)
++.. ...+.....+...++.+. ..+|++ .++|++|+.+++.+++++.+++++||+++||||+.+
T Consensus 1809 d~~~-------~~~~~~~~~~~~~~~~~~-----~~~fdl----~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S~~l 1872 (4334)
T PRK05691 1809 DFSA-------LPADARQQRLQQLADSEA-----HQPFDL----ERGPLLRACLVKAAEREHYFVLTLHHIVTEGWAMDI 1872 (4334)
T ss_pred eccC-------CChHhHHHHHHHHHHHHH-----hcCCCC----CCCceeEEEEEEeCCCcEEEEEecchhhhhhhhHHH
Confidence 5410 000001112222333332 345555 789999999999888999999999999999999999
Q ss_pred HHHHHHHHhcCccCCCCccccccCCCCCcchhhcc-------CCC--CCCchhhhcchhhhhcccccCcccCCCCCCCC-
Q 011748 174 VSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFI-------PSG--KANKPFWARGVDMLGYSLNSLRLSNISFVDAD- 243 (478)
Q Consensus 174 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~- 243 (478)
|+++|.++|.+...+.. .+. .+...++.++. ... .....||++.+... .+...+|...+.
T Consensus 1873 l~~el~~~Y~~~~~~~~-~~~---~~~~~~y~dy~~~~~~~l~~~~~~~~~~yW~~~L~~~------~~~~~lp~~~~~~ 1942 (4334)
T PRK05691 1873 FARELGALYEAFLDDRE-SPL---EPLPVQYLDYSVWQRQWLESGERQRQLDYWKAQLGNE------HPLLELPADRPRP 1942 (4334)
T ss_pred HHHHHHHHHHHHhcCCC-CCC---CCCCCCHHHHHHHHHHHhcChhhHHHHHHHHHHhcCC------CCcccCCCCCCCC
Confidence 99999999986544432 001 01112333321 111 12457999887421 112234433221
Q ss_pred --CCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCce
Q 011748 244 --SPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYL 321 (478)
Q Consensus 244 --~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~v 321 (478)
.........+.++.+.+++|+++|+++|+|++++++|||+++|++|+ + ++++++|+|+++|.... . +++|
T Consensus 1943 ~~~~~~~~~~~~~l~~~~~~~l~~~a~~~~vT~~~~l~aA~a~lL~r~s--g---~~dvv~G~~vsgR~~~~--~-~~~v 2014 (4334)
T PRK05691 1943 PVQSHRGELYRFDLSPELAARVRAFNAQRGLTLFMTMTATLAALLYRYS--G---QRDLRIGAPVANRIRPE--S-EGLI 2014 (4334)
T ss_pred cccCcCceEEEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--C---CCCeEEEecccCCCchh--h-hcce
Confidence 12344566789999999999999999999999999999999999988 5 67999999999997532 3 6799
Q ss_pred eeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecC--ccc
Q 011748 322 GFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFED--PIV 399 (478)
Q Consensus 322 G~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 399 (478)
|+|+|++|+++++++..+|.++++++++++.+.+.|+... +..+.... ..+.. ..++++|.+... +..
T Consensus 2015 G~fvntlPlrv~~~~~~t~~~ll~~v~~~~~~~~~hq~~p-----~~~iv~~l-~~~r~----~~~~plf~~~~~~~~~~ 2084 (4334)
T PRK05691 2015 GAFLNTQVLRCQLDGQMSVSELLEQVRQTVIEGQSHQDLP-----FDHLVEAL-QPPRS----AAYNPLFQVMCNVQRWE 2084 (4334)
T ss_pred eeeeeeeeEEeecCCCCCHHHHHHHHHHHHHHHHhcccCC-----HHHHHHHh-ccccc----cCCCCceEEEEEeeccc
Confidence 9999999999999999999999999999999999998742 22222221 11111 112344442111 100
Q ss_pred ccccccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 011748 400 DETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETGE 478 (478)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~ 478 (478)
...........++..... .......+.+.+...++++.+.+.|++++|++++|++++++|..+|++++++|+.++++
T Consensus 2085 ~~~~~~~~~~~~~~~~~~--~~~~~~dL~l~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~~~~~~l~~~~~~~~~~~~~ 2161 (4334)
T PRK05691 2085 FQQSRQLAGMTVEYLVND--ARATKFDLNLEVTDLDGRLGCCLTYSRDLFDEPRIARMAEHWQNLLEALLGDPQQRLAE 2161 (4334)
T ss_pred cccccCCCCceeEeeccc--CCccccceEEEEEecCCcEEEEEEECcccCCHHHHHHHHHHHHHHHHHHHhhhcCChhh
Confidence 000011112222222111 01112345555555578999999999999999999999999999999999999888753
No 6
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=6.6e-34 Score=348.36 Aligned_cols=411 Identities=13% Similarity=0.156 Sum_probs=280.1
Q ss_pred cCCCcc-cceeeeec-cC--CCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEe
Q 011748 18 RPVGGT-EYSWCKAV-PT--GTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQ 93 (478)
Q Consensus 18 R~l~~~-e~~~~~~~-~~--~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (478)
-|++.. +..|+... .+ ..++....++++|.+|.++|++||+.+++|||+||++|...++++.+++.......+...
T Consensus 2603 ~pls~~Q~~lw~~~~~~~~~~~Y~~~~~~~l~g~ld~~~L~~A~~~lv~rH~~LRt~f~~~~~~~~q~v~~~~~~~~~~~ 2682 (5163)
T PRK12316 2603 LPLSHAQQRQWFLWQLEPESAAYHLPSALHLRGVLDQAALEQAFDALVLRHETLRTRFVEVGEQTRQVILPNMSLRIVLE 2682 (5163)
T ss_pred CCCChHHHhHHHHcccCCCccccccceEEEEcCCcCHHHHHHHHHHHHHHhhHhhcceeeeCCeEEEEECCCCCccceee
Confidence 356655 44576332 22 236677889999999999999999999999999999999877666555543321111111
Q ss_pred ecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHH
Q 011748 94 HFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAA 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~ 173 (478)
+. . ......+.+.+.++.. .+|++ .++|++|+.+++.+++++.+++++||+++||||+.+
T Consensus 2683 ~~---------~--~~~~~~~~~~~~~~~~-----~~fdl----~~~pl~r~~l~~~~~~~~~l~l~~HHii~DG~S~~~ 2742 (5163)
T PRK12316 2683 DC---------A--GVADAAIRQRVAEEIQ-----RPFDL----ARGPLLRVRLLALDGQEHVLVITQHHIVSDGWSMQV 2742 (5163)
T ss_pred cc---------c--cCCHHHHHHHHHHHhh-----CCCCC----CCCCcEEEEEEEECCCeEEEEEecCcCcccHhHHHH
Confidence 11 0 1122334445555544 34555 789999999999888899999999999999999999
Q ss_pred HHHHHHHHhcCccCCCCccccccCCCCCcchhhccC------C---CCCCchhhhcchhhhhcccccCcccCCCCCCCC-
Q 011748 174 VSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFIP------S---GKANKPFWARGVDMLGYSLNSLRLSNISFVDAD- 243 (478)
Q Consensus 174 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~- 243 (478)
|+++|.++|.+...+.. ...+ +...++.++.. . ....+.||++.+... .+...+|...+.
T Consensus 2743 l~~eL~~~Y~~~~~g~~-~~l~---~~~~~y~dy~~~~~~~~~~~~~~~~~~yW~~~L~~~------~~~~~lp~~~~~~ 2812 (5163)
T PRK12316 2743 MVDELVQAYAGARRGEQ-PTLP---PLPLQYADYAAWQRAWMDSGEGARQLDYWRERLGGE------QPVLELPLDRPRP 2812 (5163)
T ss_pred HHHHHHHHHHHHhcCCC-CCCC---CCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHhcCC------CCcccCCccCCCC
Confidence 99999999987554432 0111 11122322211 1 112467999887421 112234433211
Q ss_pred --CCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCce
Q 011748 244 --SPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYL 321 (478)
Q Consensus 244 --~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~v 321 (478)
...........++.+.+.+|+++|+++|+|++++++|||++++++++ + ++++.+|+|+++|.... . ++++
T Consensus 2813 ~~~~~~~~~~~~~l~~~~~~~L~~~a~~~~vT~~~~l~aA~a~~L~r~t--g---~~dv~iG~pvsgR~~~~--~-~~~i 2884 (5163)
T PRK12316 2813 ALQSHRGARLDVALDVALSRELLALARREGVTLFMLLLASFQVLLHRYS--G---QSDIRVGVPIANRNRAE--T-ERLI 2884 (5163)
T ss_pred ccCCCCCceEEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--C---CCceEEEeeecCCCchh--H-Hhhh
Confidence 22344566789999999999999999999999999999999999987 5 67999999999996532 2 6799
Q ss_pred eeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCccc-c
Q 011748 322 GFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIV-D 400 (478)
Q Consensus 322 G~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 400 (478)
|+|+|++|++++++++.+|.++++++++++.+.+.|++.. +..+.......... ..+++|.+..+... .
T Consensus 2885 G~fvntlPlrv~l~~~~t~~~ll~~v~~~~~~~~~hq~~p-----~~~iv~~l~~~r~~-----~~~plf~~~~~~~~~~ 2954 (5163)
T PRK12316 2885 GFFVNTQVLRAQVDAQLAFRDLLGQVKEQALGAQAHQDLP-----FEQLVEALQPERSL-----SHSPLFQVMYNHQSGE 2954 (5163)
T ss_pred hheecceeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCC-----HHHHHHHhcccccc-----CCCCceeEEEeeeccc
Confidence 9999999999999999999999999999999999998742 22222222111111 12233432111110 0
Q ss_pred cccccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 011748 401 ETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETGE 478 (478)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~ 478 (478)
......+.+.+........ .....+.+.+...++++.+.+.|++++|+++++++++++|..+|.+++.+|+.++++
T Consensus 2955 ~~~~~~~~~~~~~~~~~~~--~~~~dL~l~v~~~~~~l~~~~~y~~~~~~~~~i~~l~~~f~~lL~~l~~~p~~~i~~ 3030 (5163)
T PRK12316 2955 RAAAQLPGLHIESFAWDGA--ATQFDLALDTWESAEGLGASLTYATDLFDARTVERLARHWQNLLRGMVENPQRSVDE 3030 (5163)
T ss_pred cccccCCCceeEeeeccCC--ccceeeEEEEEecCCcEEEEEEECcCCCCHHHHHHHHHHHHHHHHHHHhCCCCchhh
Confidence 0111122333333322111 112344555555567899999999999999999999999999999999999988864
No 7
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=5.6e-33 Score=337.94 Aligned_cols=414 Identities=14% Similarity=0.126 Sum_probs=273.6
Q ss_pred cCCCcc-cceeeeecc---CCCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEe
Q 011748 18 RPVGGT-EYSWCKAVP---TGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQ 93 (478)
Q Consensus 18 R~l~~~-e~~~~~~~~---~~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (478)
-|+++. +..|+.... .+.++....++++|.+|.++|++||..+++|||+||++|...++.+.+++.......+...
T Consensus 676 ~plS~~Q~~lw~~~~~~~~~~~Y~~~~~~~l~g~ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~v~~~~~~~~~~~ 755 (4334)
T PRK05691 676 LPQSLAQNRLWLLWQLDPQSAAYNIPGGLHLRGELDEAALRASFQRLVERHESLRTRFYERDGVALQRIDAQGEFALQRI 755 (4334)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceeccEEEEEeccCCHHHHHHHHHHHHHHhhhhcEEEEccCCeEEEEECCCCCCcceEE
Confidence 467776 444763322 2346677889999999999999999999999999999998776666555543322233333
Q ss_pred ecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHH
Q 011748 94 HFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAA 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~ 173 (478)
++ +. ...+.....+.....++.+ .+|++ .++|++|+.+++.+++++.+++.+||+++||||+.+
T Consensus 756 d~--~~-----~~~~~~~~~~~~~~~~~~~-----~~fdl----~~~pl~R~~l~~~~~~~~~l~l~~HHii~DG~S~~l 819 (4334)
T PRK05691 756 DL--SD-----LPEAEREARAAQIREEEAR-----QPFDL----EKGPLLRVTLVRLDDEEHQLLVTLHHIVADGWSLNI 819 (4334)
T ss_pred eC--CC-----CChHHHHHHHHHHHHHHhc-----CCCCC----CCCCceEEEEEEEcCCeEEEEEeeCceeeccchHHH
Confidence 33 11 0000001112222333333 34555 789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccCCCCccccccCCCCCcchhhcc-------CCC--CCCchhhhcchhhhhcccccCcccCCCCCCCC-
Q 011748 174 VSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFI-------PSG--KANKPFWARGVDMLGYSLNSLRLSNISFVDAD- 243 (478)
Q Consensus 174 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~- 243 (478)
|+++|.++|.+...+.. ...+ +...++.++. ... ...+.||++.+... .+...+|...+.
T Consensus 820 l~~el~~~Y~~~~~g~~-~~l~---~~~~~y~dy~~~~~~~l~~~~~~~~~~yW~~~L~~~------~~~~~l~~~~~~~ 889 (4334)
T PRK05691 820 LLDEFSRLYAAACQGQT-AELA---PLPLGYADYGAWQRQWLAQGEAARQLAYWKAQLGDE------QPVLELATDHPRS 889 (4334)
T ss_pred HHHHHHHHHHHHhcCCC-CCCC---CCCCCHHHHHHHHHHHhcChhHHHHHHHHHHHhCCC------CCccCCCCCCCCC
Confidence 99999999987544432 0010 1112333321 111 12467999888421 111223332221
Q ss_pred --CCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCce
Q 011748 244 --SPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYL 321 (478)
Q Consensus 244 --~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~v 321 (478)
.........+.++.+.+.+|+++|+++|+|++++++|||+++|++|+ + ++++.+|+++++|.... . ++++
T Consensus 890 ~~~~~~~~~~~~~l~~~~~~~L~~~a~~~gvT~~~vl~aa~allL~ryt--g---~~dv~~G~~~sgR~~~~--~-~~~v 961 (4334)
T PRK05691 890 ARQAHSAARYSLRVDASLSEALRGLAQAHQATLFMVLLAAFQALLHRYS--G---QGDIRIGVPNANRPRLE--T-QGLV 961 (4334)
T ss_pred ccCCcCceEEEEeCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh--C---CCCEEEEecccCCCchh--h-hcce
Confidence 12233456788999999999999999999999999999999999988 5 67999999999997532 2 6799
Q ss_pred eeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCccccc
Q 011748 322 GFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDE 401 (478)
Q Consensus 322 G~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 401 (478)
|+|+|++|++++++++.+|.++++++++++.+.+.|+... +..+.... .. .....+.+.+++. .......
T Consensus 962 G~fintlplr~~~~~~~t~~~ll~~v~~~~~~a~~h~~~p-----~~~i~~~l-~~---~~~~~lf~~~~~~-~~~~~~~ 1031 (4334)
T PRK05691 962 GFFINTQVLRAQLDGRLPFTALLAQVRQATLGAQAHQDLP-----FEQLVEAL-PQ---AREQGLFQVMFNH-QQRDLSA 1031 (4334)
T ss_pred eeeeeeeeEEEecCCCCCHHHHHHHHHHHHHHHHhhccCC-----HHHHHHHh-Cc---cCCCCceeEEEEc-ccCCccc
Confidence 9999999999999999999999999999999999988742 22222211 11 1011122222221 1100000
Q ss_pred ccccccceEEeeEEEEeecccccCeEEEEEEE-ecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 011748 402 TNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTI-RDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETGE 478 (478)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~ 478 (478)
. .....+........ .......+.+.+.. .+|++.+.+.|+.++|++++|++++++|..+|++++++|+.++++
T Consensus 1032 ~-~~~~~~~~~~~~~~--~~~~~~~l~l~~~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~~~~~p~~~~~~ 1106 (4334)
T PRK05691 1032 L-RRLPGLLAEELPWH--SREAKFDLQLHSEEDRNGRLTLSFDYAAELFDAATIERLAEHFLALLEQVCEDPQRALGD 1106 (4334)
T ss_pred c-ccCCCceeeeeccc--CCcccceEEEEEEECCCCcEEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhCcccchhh
Confidence 0 00111222221111 01111233443333 246799999999999999999999999999999999999988764
No 8
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=100.00 E-value=5.7e-31 Score=265.67 Aligned_cols=428 Identities=17% Similarity=0.220 Sum_probs=260.0
Q ss_pred CCCcccceeeeeccCC-CceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCC--------CCcceEecCC--CC
Q 011748 19 PVGGTEYSWCKAVPTG-TGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSA--------DAKTFSFITP--PE 87 (478)
Q Consensus 19 ~l~~~e~~~~~~~~~~-~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~--------~~~~~~~~~~--~~ 87 (478)
+||..|++++-.+..+ ..++.++.+++..++.+.|..|++.+|.+||+|++.+..++ ....+...+. .-
T Consensus 1 ~lg~lE~~~~~r~~~~~y~n~~v~a~y~~~~~~~~l~~AL~~~I~~~P~L~~~i~~~~~~~~~~~~~~~~~~~~P~~~~l 80 (480)
T PF07247_consen 1 RLGFLERYFYARHRLGLYSNFIVTATYNKPLSKNQLYHALRSVILKHPILSVNIFGEDDPEDDAYYNSDNYTVRPYFKRL 80 (480)
T ss_pred CCChhHHHHHHhhhcCCceeEEEEEEECCCCCHHHHHHHHHHHHHhCccEEEEEeccCCcccccccccccceeccccccc
Confidence 4789999876444333 45678899999999999999999999999999999999763 1111111110 01
Q ss_pred CCceEeecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecC--CCceEEEEEeccee
Q 011748 88 PHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPS--ETQWVVTLRLHTSI 165 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~--~~~~~l~~~~hH~i 165 (478)
+.|.+.++-.-.......+.+ ....+.+.+.++. ...++.. .+.|+||+.+++.. ++...+++.+||++
T Consensus 81 ~~I~l~dvV~~~~~e~~~~~d---~~~~~~l~~~l~~--~~~~~~~----~~~P~Wrl~vl~~~~~~~~~~i~f~~~H~i 151 (480)
T PF07247_consen 81 PSIDLDDVVSFEQREEFRDED---EKFDEELLEILNN--HNFPYDD----PTKPLWRLIVLPNEDDESFQFIVFVFHHAI 151 (480)
T ss_pred CeEEHHHeeccCCccccccCC---ccccHHHHHHHhh--cccCCCC----CCCCCeEEEEECCCCCCcceEEEEEecccc
Confidence 244443331000000000111 1222233333333 2222221 34599999999854 23578889999999
Q ss_pred cchhhHHHHHHHHHHHhcCccCCCC------ccccccC----CCCCcchhhccCCCCC----Cchhhhcchhhhhccccc
Q 011748 166 CDRASAAAVSKELLRLMTGREEGGI------EKEYDRK----GEVSLGIEEFIPSGKA----NKPFWARGVDMLGYSLNS 231 (478)
Q Consensus 166 ~DG~S~~~~~~~l~~~y~~~~~~~~------~~~~~~~----~~~~~~~~~~~~~~~~----~~~~w~~~l~~~~~~~~~ 231 (478)
+||+|+.+|+++|++.++....... ...+... ..+++++++.+..... ...+|...+. ..+....
T Consensus 152 ~DG~Sg~~Fh~~ll~~L~~~~~~~~~~~~~~i~~~~~~~~~~~~LP~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 230 (480)
T PF07247_consen 152 FDGMSGKIFHEDLLEALNSLSSDPEPDDNDVIFDPSSDVEHLPSLPPPIEELIKSSPSLYFLPKSLWSSFIF-PSLFFSK 230 (480)
T ss_pred cccHHHHHHHHHHHHHHhhccccccccccCceecCCcccccccCCCcCHHHhhhccccHHHHHHHHHHHhhh-hhccccc
Confidence 9999999999999999987543321 0000000 1223345544432111 1122322110 0000000
Q ss_pred C-cccCCCCCCCC-CCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccC-CCCCCCCceEEEeeccc
Q 011748 232 L-RLSNISFVDAD-SPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKY-FPSHQREKYAVVTLVDC 308 (478)
Q Consensus 232 ~-~~~~lp~~~~~-~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~-~~~~~~~~~~~~~~v~~ 308 (478)
. .........+. .+.+++...+.|+++.+++|+++||++|+|++++|+|+++.++++... ........+.+.+|+|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~t~~~~~~i~~~~~~~ll~~CR~~~~TlT~~L~al~~~al~~~~~~~~~~~~~~~~~~~pvnl 310 (480)
T PF07247_consen 231 WSDKPIFATIPPIPKPFKTRYRSLSISPEELKKLLKACRKHGTTLTALLHALIALALSKVQLPKPKSEKSSFKISTPVNL 310 (480)
T ss_pred cccCCccCCCCccccCCcceEEEEEECHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcccccccCceEEEEeeeeC
Confidence 0 00001001111 234556778899999999999999999999999999999999996310 01111346888999999
Q ss_pred CCcCCCCCC---CCceeeeeeeccc-----cccC--CCchhHHHHHHHHHHHHHhhccCCCccccchhH--HHHHH----
Q 011748 309 RSILEPVLS---DDYLGFYHSAILN-----THDV--NGEEELWELATRSYTSFANAKNSDKHFTDMNDL--NFLMC---- 372 (478)
Q Consensus 309 R~~~~~~~~---~~~vG~f~~~~~~-----~~~~--~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~--~~l~~---- 372 (478)
|++++.... ...+|.+++.... .... +..+.||++++++++++.+.++....+..++.. ..+..
T Consensus 311 R~~~p~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~fW~~a~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~d~ 390 (480)
T PF07247_consen 311 RRFLPEDSELRDEYSYGNFVGGIDFSYSISPVSASRGSSENFWELARQIQKEIKESIKNGKSLNGVGFLMNDFLLKYVDI 390 (480)
T ss_pred CCCCCccccccccccceeEEEccceeeecccccccccchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHhccCCH
Confidence 999976543 3567888876433 1122 234689999999999999987765544332210 00110
Q ss_pred --HHhhCCCCCCCccccceeeEeecCcccccccccccceEEeeEEEEeecccccCeEEEEEEEe-cCeeEEEEEcCCCCC
Q 011748 373 --KAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIR-DGWLDCACVYPSPLH 449 (478)
Q Consensus 373 --~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~l~~~y~~~~~ 449 (478)
......+ ..+...+.+ ||.|.--....+.+.++++.|.++...+++.|.+++.+. +|+|+|.++|..++.
T Consensus 391 ~~~~~~~~~-----~~r~~t~ev--SNLG~~~~~~~~~~~I~~~~Fsq~~~~~~~~f~~~viS~~~G~L~i~~s~~~~~~ 463 (480)
T PF07247_consen 391 WDFFKSKIG-----KPRRSTFEV--SNLGVFDFEENGKWKIEDMVFSQSAGVIGSAFSFNVISTKGGGLNISISWQEGIV 463 (480)
T ss_pred HHHHHhhcC-----CCCCCcEEE--EeCCcccCCCCCCeEEEEEEEeCCCCCCcCCEEEEEEEcCCCceEEEEEEeCCcc
Confidence 0001111 112233445 888862215556799999999988887888898876665 589999999999999
Q ss_pred CHHHHH-HHHHHHHH
Q 011748 450 SREQLQ-QLIDDMKK 463 (478)
Q Consensus 450 ~~~~i~-~~~~~~~~ 463 (478)
+..+.+ .|++.|.+
T Consensus 464 ~~~~~~~~~~~~~~~ 478 (480)
T PF07247_consen 464 EDEEMEDEFMELFKQ 478 (480)
T ss_pred cccchHHHHHHHHHh
Confidence 988874 66666554
No 9
>PRK09294 acyltransferase PapA5; Provisional
Probab=100.00 E-value=8.1e-30 Score=252.56 Aligned_cols=393 Identities=16% Similarity=0.146 Sum_probs=241.3
Q ss_pred CCccccCCCcccceeeeeccCCCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCC-CCCce
Q 011748 13 PEPMARPVGGTEYSWCKAVPTGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPP-EPHIQ 91 (478)
Q Consensus 13 ~~~~~R~l~~~e~~~~~~~~~~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~-~~~~~ 91 (478)
|+.+-|+|+..|+.|... .....++++++|.+|.++|++||.++++|||+||++|...+++.++++.... .+.+.
T Consensus 3 ~~~~~~~L~~~~~~f~~~----~~~~~~~~~l~g~lD~~~L~~Al~~l~~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~v~ 78 (416)
T PRK09294 3 PGSVIRKLAPSEEVFARY----EAFTGYTAHLRGVLDIDALSDAFDALLRAHPVLAAHLEQDSDGGWELVADDLLHPGIV 78 (416)
T ss_pred CCCcccCCchHHhhhhcc----CceEEEEEEEcCCCCHHHHHHHHHHHHHhCHHhhEEEEECCCCceEEeeCCcCCCCeE
Confidence 577889999999998761 2334478999999999999999999999999999999654443333333321 12333
Q ss_pred EeecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCC-CeEEEEEEecCCCceEEEEEecceecchhh
Q 011748 92 IQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDS-NLFNVSIYTPSETQWVVTLRLHTSICDRAS 170 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S 170 (478)
+.+. .. .++ .. +++ + ..+ +++++.++. +++++.+++.+||+++||||
T Consensus 79 ~~d~---------~~----~~~---------~~-~~~----l----~~~~~l~~~~~~~-~~~~~~l~l~~hH~i~DG~S 126 (416)
T PRK09294 79 VVDG---------DA----ARP---------LP-ELQ----L----DQGVSLLALDVVP-DDGGARVTLYIHHSIADAHH 126 (416)
T ss_pred EEec---------cc----ccc---------cC-CCC----C----CCCCceEEEEEEE-cCCCEEEEEEeccEeEcccc
Confidence 3222 00 000 11 232 2 344 589988876 67789999999999999999
Q ss_pred HHHHHHHHHHHhcCccC-CCCccccccCCCCCcchhhccCCCCC-------CchhhhcchhhhhcccccCcccCCC-CCC
Q 011748 171 AAAVSKELLRLMTGREE-GGIEKEYDRKGEVSLGIEEFIPSGKA-------NKPFWARGVDMLGYSLNSLRLSNIS-FVD 241 (478)
Q Consensus 171 ~~~~~~~l~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~w~~~l~~~~~~~~~~~~~~lp-~~~ 241 (478)
+.+|+++|...|.+... +.. ..... .+...++++++..... ...+|.... .+.....+ ..+ ...
T Consensus 127 ~~~ll~el~~~Y~~~~~~~~~-~~~~~-~~~~~~~ed~~~~~~~~~~~~~~~~~~~~~~~---~~~lp~~~--~~~~~~~ 199 (416)
T PRK09294 127 SASLLDELWSRYTDVVTTGDP-GPIRP-QPAPQSLEAVLAQRGIRRQALSGAERFMPAMY---AYELPPTP--TAAVLAK 199 (416)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CCCCC-CCCCcCHHHHHHhcCCCcccccchhhhhhhhc---cccCCCCC--cCcCCCC
Confidence 99999999999986543 221 11100 1122344444321110 011222211 00001111 011 111
Q ss_pred CCCCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCce
Q 011748 242 ADSPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYL 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~v 321 (478)
+..+.........++++.+++|++.||++|+|++++++||++.++++++ +. +...+.+++|+++|++.+++.....+
T Consensus 200 ~~~~~~~~~~~~~l~~~~~~~L~~~a~~~~~t~~~~l~Aa~~~~l~r~~--~~-~~~~i~~~~pv~~R~~l~p~~~~~~~ 276 (416)
T PRK09294 200 PGLPQAVPVTRCRLSKAQTSSLAAFGRRHRLTVNALVSAAILLAEWQLR--RT-PHVPLPYVYPVDLRFRLTPPVAATEG 276 (416)
T ss_pred CCCCCCCceeEEEeCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CC-CCCceeeecchhhHhhcCCCCCcccc
Confidence 1112233466789999999999999999999999999999999999876 42 13357788999999987655443455
Q ss_pred eeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCcccc-
Q 011748 322 GFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVD- 400 (478)
Q Consensus 322 G~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 400 (478)
+++++.....+.+.++.+|+++++++++++++.+.+......+... ......++.. . .+. ++.+|.|.
T Consensus 277 ~n~~g~~~~~~~~~~~~sf~ela~~v~~~~~~~l~~~~v~~~~~~~---~~~~~~~~~~-----~-~~~--v~~Snlg~~ 345 (416)
T PRK09294 277 TNLLGAATYLAEIGPDTDIVDLARAIAATLRADLADGVIQQSFLHF---GTAFEGTPPG-----L-PPV--VFITNLGVA 345 (416)
T ss_pred eeeEeeeeeeccccCCCCHHHHHHHHHHHHhhhhhcceeeehhhcc---cccccCCCCC-----C-CCe--EEEecCCcC
Confidence 6666665556677778899999999999999988876532211110 0000111100 0 111 34477775
Q ss_pred cccccccceEEeeEEEEeecccccCe-EEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHh
Q 011748 401 ETNKLHQEIGLEDYIGCSSVHGVGPS-IAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEG 468 (478)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~ 468 (478)
..+...+.++++++..... ...+.. ....+.+++|+|.|++.+.....+ +-++.+...|..+
T Consensus 346 ~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~f~~~~~~~~-----~~~~~~~~~~~~~ 408 (416)
T PRK09294 346 PPMRTPPGLELEDIHSQFY-CAISVPIGGYSCGVFAGRLLIEHHGHIAAPG-----KSLEAIRELLCTV 408 (416)
T ss_pred CCCCCCCCeEEEeeeeeee-ecccCceeEEEEeeecCceeeeeccCcCCcc-----chHHHHHHHHHhh
Confidence 3333344566665543221 122222 234577889999999999877654 4444444444443
No 10
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=99.97 E-value=8.7e-31 Score=248.91 Aligned_cols=279 Identities=19% Similarity=0.265 Sum_probs=176.7
Q ss_pred CCCcccc-eeeeec-c--CCCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCC-CcceEecCCCCCCceEe
Q 011748 19 PVGGTEY-SWCKAV-P--TGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSAD-AKTFSFITPPEPHIQIQ 93 (478)
Q Consensus 19 ~l~~~e~-~~~~~~-~--~~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (478)
||+++.+ .|+... . ...++..+.++++|.+|.++|++||..++++||+||++|...++ .+.++........+...
T Consensus 6 plt~~Q~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~l~~A~~~~~~~h~~Lr~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
T PF00668_consen 6 PLTPAQQGIWLLQQLSPDSSSYNIAFVFELDGPIDIERLRQALERLIARHPILRTRFEEDDGFEPYQRVLESSSIEIEYI 85 (301)
T ss_dssp E--HHHHHHHHHHHHSTTSTTTEEEEEEEEEES--HHHHHHHHHHHHHH-GGGGEEEEECTTCSSEEEEESEEETTCEEE
T ss_pred CCHHHHHHHHHHhccCCCCCcEEEEEEEEecCccchHHHhhhhHhhhhhhhhhhheeeeecccccceeeeeccccccccc
Confidence 5666644 354222 2 23456778999999999999999999999999999999999886 55555543322234443
Q ss_pred ecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHH
Q 011748 94 HFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAA 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~ 173 (478)
+. ........++.+.+.+..+. ++ ++ .++|++|+.+++.+++++.|++.+||+++||+|+.+
T Consensus 86 ~~---------~~~~~~~~~~~~~~~~~~~~-~~----~l----~~~pl~~~~l~~~~~~~~~l~~~~hH~i~Dg~S~~~ 147 (301)
T PF00668_consen 86 DV---------SSDSDSEEEILELIEQELNR-PF----DL----SEGPLFRFTLIRTSDDEYFLLISFHHIICDGWSLNI 147 (301)
T ss_dssp EC---------CTS-HHHHHHHHHHHHHHCC--------T----CTSBSEEEEEEEEETTEEEEEEEEEGGG--HHHHHH
T ss_pred cc---------cccccchhhhhhhhhhhhhh-cc----cc----cccchhhccccccccccchhcccccccccccccchh
Confidence 33 10001123344445555433 44 44 788999999999877799999999999999999999
Q ss_pred HHHHHHHHhcCccCCCCccccccCCCCCcchhhc------cCCC---CCCchhhhcchhhhhcccccCcccCCCCCC--C
Q 011748 174 VSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEF------IPSG---KANKPFWARGVDMLGYSLNSLRLSNISFVD--A 242 (478)
Q Consensus 174 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~--~ 242 (478)
|+++|.++|.+...... ....++.++ .... ...+.||++.+..... ...+|... +
T Consensus 148 l~~~l~~~y~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~------~~~~~~~~~~~ 213 (301)
T PF00668_consen 148 LLRELLQAYAGLSNPLP--------APSPSYKDFVEFQREYRNSDRLQEARAFWREYLRGVPP------APSLPPDFPRP 213 (301)
T ss_dssp HHHHHHHHHHHHHTT------------S-BHHHHHHHHHHHHTSHHHHHHHHHHHHHCCTS-----------CTTTT--C
T ss_pred hhhhhHHhhhccccccc--------cccccccccccccccccccccccccccccccccccccc------ccccccccccc
Confidence 99999999987651110 111122221 1111 2367899988742211 01122221 1
Q ss_pred CC-CCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCce
Q 011748 243 DS-PRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYL 321 (478)
Q Consensus 243 ~~-~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~v 321 (478)
.. ........+.++.+.+++|.++|+++|+|++.+++|||+.++++++ + ++++.+++|+++|....+ ...+++
T Consensus 214 ~~~~~~~~~~~~~l~~~~~~~l~~~a~~~~~t~~~~l~aa~~~~l~~~~--~---~~~~~i~~~~~~R~~~~~-~~~~~v 287 (301)
T PF00668_consen 214 SIPSYSPSRISFSLSSELSKRLKEFAKQYGVTPFAVLLAAFALALSRLT--G---QDDVVIGTPVSGRPRSGP-GFSNTV 287 (301)
T ss_dssp SSBEEBEEEEEEE--HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH--T---TSEEEEEEEE---TTTSC-GGGGS-
T ss_pred cccccccccccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhhcc--c---cceeeecccccCCCCCCc-ChhhCe
Confidence 11 1223467889999999999999999999999999999999999987 5 578999999999998222 236799
Q ss_pred eeeeeeccccccCC
Q 011748 322 GFYHSAILNTHDVN 335 (478)
Q Consensus 322 G~f~~~~~~~~~~~ 335 (478)
|+|+|++|++++++
T Consensus 288 G~~~~~~P~~i~~~ 301 (301)
T PF00668_consen 288 GPFVNTLPVRIDVD 301 (301)
T ss_dssp SS--EEEEEEEE--
T ss_pred eeEeEEEEEEEEcC
Confidence 99999999998874
No 11
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=99.96 E-value=3.7e-27 Score=236.03 Aligned_cols=419 Identities=13% Similarity=0.072 Sum_probs=236.0
Q ss_pred CCcccceeee-eccCCCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCC---CCcceEecCCCCCCceEeec
Q 011748 20 VGGTEYSWCK-AVPTGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSA---DAKTFSFITPPEPHIQIQHF 95 (478)
Q Consensus 20 l~~~e~~~~~-~~~~~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 95 (478)
|++.+..|+. ......++....+.++|.+|.+.|++|+..++.+||.||++|...+ +++.|+.... ..+..+..
T Consensus 1 ls~~D~~~l~~e~~~~~~~~~~~~~l~g~ld~~~l~~al~~~~~rh~~LR~~~~~~~~~~~~~~~~~~~~--~~~~~~v~ 78 (446)
T TIGR02946 1 LSPVDAAFLRLETPTRPMHIGALAVFEGPLSFEALRALLESRLPLAPRFRQRLREVPLGLGHPYWVEDPD--FDLDYHVR 78 (446)
T ss_pred CCHHHHHHHhccCCCCCceEEEEEEEcCCccHHHHHHHHHHhhccCChhhcccccCCCCCCCcEEeeCCC--CChHHhhc
Confidence 4556666663 3333345666788899999999999999999999999999998753 2343332221 12222211
Q ss_pred ccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEe-cCCCceEEEEEecceecchhhHHHH
Q 011748 96 DISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYT-PSETQWVVTLRLHTSICDRASAAAV 174 (478)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~-~~~~~~~l~~~~hH~i~DG~S~~~~ 174 (478)
.. .. ......+.+.+.+.+... .+||+ .. |+||+.+++ ++++++.+++++||+++||||+.+|
T Consensus 79 ~~-----~~-~~~~~~~~~~~~~~~~~~-----~p~dl----~~-Pl~r~~li~~~~~~~~~l~~~~HH~i~DG~S~~~l 142 (446)
T TIGR02946 79 RV-----AL-PAPGTRRELLELVGRLMS-----TPLDR----SR-PLWEMHLIEGLAGGRFAVLTKVHHALADGVAGLRL 142 (446)
T ss_pred cc-----cC-CCCCCHHHHHHHHHHHhc-----CCCCC----CC-CCeEEEEEeccCCCeEEEEEEeehhhhchHHHHHH
Confidence 00 00 111122334444544433 34444 54 999999999 8888999999999999999999999
Q ss_pred HHHHHHHhcCccCCCCccccccCCCCCcchhhccCCCCC--Cc----------hhhhcchhhhhcccccCcccCCCCCCC
Q 011748 175 SKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFIPSGKA--NK----------PFWARGVDMLGYSLNSLRLSNISFVDA 242 (478)
Q Consensus 175 ~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~w~~~l~~~~~~~~~~~~~~lp~~~~ 242 (478)
++++...|........ +. ......+.++...... .. .+|...+..............+|+..+
T Consensus 143 ~~~l~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (446)
T TIGR02946 143 LARLLDDDPDPPPLPA---PP--PPPQPSTRGLLSGALSGLPSALLRRVASTAPGVVRAAGRAVEGVARSARPALPFTAP 217 (446)
T ss_pred HHHHcCCCCCCCCCCC---CC--CCCCCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCC
Confidence 9999999864321111 00 0011111111110000 00 122221110000000001111222211
Q ss_pred CC---CCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCC-CCCCCCceEEEeecccCCcCCCCCCC
Q 011748 243 DS---PRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYF-PSHQREKYAVVTLVDCRSILEPVLSD 318 (478)
Q Consensus 243 ~~---~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~-~~~~~~~~~~~~~v~~R~~~~~~~~~ 318 (478)
.+ ...+....+......++.|++.||+.|+|++.+++||++.+++++... ++.....+.+++|+++|...+.
T Consensus 218 ~~~~~~~~~~~r~~~~~~~~~~~l~~~a~~~g~T~ndvllaa~~~al~~~~~~~~~~~~~~i~~~~pv~~R~~~~~---- 293 (446)
T TIGR02946 218 PTPLNGPISRKRRFAAQSLPLADVKAVAKAFGVTINDVVLAAVAGALRRYLEERGELPDDPLVAMVPVSLRPMEDD---- 293 (446)
T ss_pred CCcCCCCCCccceEEeeccCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeeeccccccC----
Confidence 11 111223346677778888999999999999999999999999987511 1111234999999999986432
Q ss_pred CceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHH---HhhCCCCCCCccccceeeEeec
Q 011748 319 DYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCK---AIDNPGLTPASSLRTAVISVFE 395 (478)
Q Consensus 319 ~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~v~~ 395 (478)
..+|++++.+.+.+.++..+ +.+.+++|++.+...+++........ ...+... .................+++..
T Consensus 294 ~~~~N~~~~~~~~l~~~~~~-~~~~l~~v~~~~~~~k~~~~~~~~~~-~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ 371 (446)
T TIGR02946 294 SEGGNQVSAVLVPLPTGIAD-PVERLSAIHASMTRAKESGQAMGANA-LLALSGLLPAPLLRLALRALARKAQRLFNLVI 371 (446)
T ss_pred CCCCCEEEEEEecCCCCCCC-HHHHHHHHHHHHHHHHHhHhhcCHHH-HHHHHHhccHHHHHHHHHHhhccCCCceeEEE
Confidence 23444444444444444443 56777999999998877654321000 0000000 0000000000000001222222
Q ss_pred Ccccc-cccccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhcc
Q 011748 396 DPIVD-ETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGS 470 (478)
Q Consensus 396 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~ 470 (478)
+|+.. ..+...++..+.++..... ...+..+.+.+.+++|++.+++.++.+.++. ++++.+.|...|+++.+
T Consensus 372 SNvpg~~~~~~~~g~~v~~~~~~~p-~~~~~~l~~~~~sy~g~l~~~~~~d~~~~~d--~~~l~~~~~~~l~~l~~ 444 (446)
T TIGR02946 372 SNVPGPREPLYLAGAKLDELYPLSP-LLDGQGLNITVTSYNGQLDFGLLADRDAVPD--PQELADALEAALEELEA 444 (446)
T ss_pred eCCCCCCcccEecCeeEEEeecccc-ccCCCeEEEEEEecCCeEEEEEeechhhCCC--HHHHHHHHHHHHHHHHh
Confidence 56543 2233344445666554211 1223456778889999999999999999884 88899999988887743
No 12
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=99.87 E-value=9.1e-20 Score=166.80 Aligned_cols=399 Identities=14% Similarity=0.040 Sum_probs=228.9
Q ss_pred EEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCC-CCCceEeecccCCccccccCCCCCCchHHHH
Q 011748 39 VLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPP-EPHIQIQHFDISSTSQTISDKTGAVSPFQLI 117 (478)
Q Consensus 39 ~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (478)
...+.+.+.+|+++|.+|++..+..-|+|.|.|.+...++.|+..-.. .+.+.++-. .+ ..++...+..+.+.
T Consensus 28 ~~vi~f~~~fni~~lkkAl~~svka~piL~c~f~eg~~~~~Wq~i~d~~v~~~~i~l~-~t-----~~~~~~~E~~fs~F 101 (439)
T COG4908 28 HYVITFGDKFNIDRLKKALRYSVKAVPILSCKFSEGEKRPFWQRILDFEVDQIAIHLE-ET-----KTDEPFGEVAFSRF 101 (439)
T ss_pred EEEEEeCCccCHHHHHHHHHHHHHhhhhhhhhhhhcccchhHHHHhcccccceeEEEe-ee-----cccccchhHHHHHH
Confidence 345666778999999999999999999999999877555555433222 123222211 00 01111112222333
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCccccccC
Q 011748 118 LEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRK 197 (478)
Q Consensus 118 ~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~ 197 (478)
+...++ .. ..+|.+++.+++ ......|++.+||++|||+|+..++-=|.++|..+..... -.+...
T Consensus 102 i~~k~~----~t--------~~~PqI~v~~~r-~~~~d~L~i~lhH~~~DgrG~leyL~ll~~~Ys~L~~~~~-~~p~~~ 167 (439)
T COG4908 102 IVRKLN----IT--------KESPQIKVFVVR-QTVGDTLVINLHHAVCDGRGFLEYLYLLARLYSKLLDNPN-YQPNEE 167 (439)
T ss_pred Hhcccc----cc--------cCCCeEEEeeeh-hccCcEEEEEechhhhcchhHHHHHHHHHHHHHhcccCCC-CCcchh
Confidence 333322 01 458999999998 5567899999999999999999999999999966543321 000000
Q ss_pred CCCCcchhhccCCCCCCchhhhcchhhhhcccccCcccCCCCCCCCCCCcceEEEEecCHHHHHHHHHHHHhcCCChHHH
Q 011748 198 GEVSLGIEEFIPSGKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGA 277 (478)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~ 277 (478)
..-..+.. .+.+.. ..-...+.+......... -...+|..............+.|+.++.++|+++|+.+|.|++.+
T Consensus 168 ~~g~k~i~-~v~d~f-~~~~~~r~~ik~~~e~n~-i~~~fP~~~s~d~~~m~~~~~~I~~~ef~~ikay~k~~gaTiNDi 244 (439)
T COG4908 168 SKGSKDIF-GVRDLF-DVLERKRGLIKNLIERNR-ITRVFPLGGSPDGPNMSFEKTTIPSDEFKKIKAYAKVHGATINDI 244 (439)
T ss_pred hccccchh-hhhhhh-hHHHHHHHhhhhhhccCC-CCccCCCcCCCCCCcceEEEEecCHHHHHHHHHhhhhcCCcHHHH
Confidence 00000000 000000 000000111000000001 012234332333344566779999999999999999999999999
Q ss_pred HHHHH--HHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhc
Q 011748 278 LAAAG--LIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAK 355 (478)
Q Consensus 278 l~aa~--~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~ 355 (478)
++||+ ..+++..+ .+.-.+.+.+.+|||.|++++.. +..+|+|.+.+...++.+.-.+|....+.|+..+.-..
T Consensus 245 ilaa~~~fr~~y~~~--~~k~~~~lsi~~~VDlRkyl~sk--~~sI~Nls~~~~i~I~~dd~~~fe~t~~~vk~~~~~~k 320 (439)
T COG4908 245 ILAALLKFRLLYNTT--HEKANNYLSIDMPVDLRKYLPSK--EESISNLSSYLTIVINVDDVTDFEKTLEKVKGIMNPKK 320 (439)
T ss_pred HHHHHHHHHHHHhhh--chhhcCeeeeceeeehhhhcccc--ccceeccceeEEEEEeccccccHHHHHHHHHhhcCccc
Confidence 99999 55555544 21113679999999999998753 37899999999999999999999999999986655321
Q ss_pred cCCCcc---ccchhHHHHHHH-Hhh-CCCCCCCccccceeeEeecCcccc--cccccccceEEe-eEEEEeecccccCeE
Q 011748 356 NSDKHF---TDMNDLNFLMCK-AID-NPGLTPASSLRTAVISVFEDPIVD--ETNKLHQEIGLE-DYIGCSSVHGVGPSI 427 (478)
Q Consensus 356 ~~~~~~---~~~~~~~~l~~~-~~~-~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 427 (478)
-+...+ --++.++.++.. ... -.... ....... +..+|+|. ..-..+++...+ |..++. .....+.|
T Consensus 321 ~gl~g~~~~yl~~ilp~~fkr~~~~~~kk~~-~~~~~~g---~ssTNiG~id~~~~~f~g~~~d~~~~~~~-p~~~ap~F 395 (439)
T COG4908 321 IGLAGLYSFYLLGILPLMFKRKLYLKLKKLV-EDRFVEG---KSSTNIGIIDEEVPPFGGEAEDTDAFFFG-PCKYAPVF 395 (439)
T ss_pred cCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHhhcc---cccccccccccccCCcCceecccceEEEe-ecccCccc
Confidence 111111 000111111111 000 00000 0000001 11156664 112233433222 223322 23445678
Q ss_pred EEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhc
Q 011748 428 AIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGG 469 (478)
Q Consensus 428 ~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~ 469 (478)
.+.+.+++.++++++.|-..-=+....+.+++.|...|...+
T Consensus 396 pl~~tt~g~~~tLtinf~r~~dk~~~~~~fl~~f~~~l~~~~ 437 (439)
T COG4908 396 PLGVTTYGYKLTLTINFYRTNDKKKITGHFLDLFAKELRETL 437 (439)
T ss_pred eeEEEEeccceEEEEEEEeecCcchHHHHHHHHHHhHhHHHh
Confidence 888888888888888875444456778888888888877654
No 13
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=99.43 E-value=6.8e-12 Score=143.29 Aligned_cols=206 Identities=17% Similarity=0.123 Sum_probs=142.6
Q ss_pred hhhcchhhhhcccccCcccCCCCCCCCC---CCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCC
Q 011748 217 FWARGVDMLGYSLNSLRLSNISFVDADS---PRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFP 293 (478)
Q Consensus 217 ~w~~~l~~~~~~~~~~~~~~lp~~~~~~---~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~ 293 (478)
||++.+.. .+...+|...+.. ......+.+.++.+... +++|+|++++++|||+++|++++ +
T Consensus 1 ~W~~~L~~-------~~~~~lp~d~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~t~~~~l~aa~~~lL~r~s--g 65 (1389)
T TIGR03443 1 RWSERLDN-------PTLSVLPHDYLRPANNRLVEATYSLQLPSAEVT------AGGGSTPFIILLAAFAALVYRLT--G 65 (1389)
T ss_pred ChhHhhCC-------CCcccCCCCCCCCCCCCcCCeEEEEeCCHHHHh------hhcCCCHHHHHHHHHHHHHHHHc--C
Confidence 78887741 2234455443222 22334567788887776 88999999999999999999987 5
Q ss_pred CCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHH
Q 011748 294 SHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCK 373 (478)
Q Consensus 294 ~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (478)
++++++|+|+++|. |++|+++++++..+|.++++++++++.+.+.|++.. +..+...
T Consensus 66 ---~~dv~iG~~~~~R~---------------~~lplr~~~~~~~t~~~~l~~~~~~~~~~~~h~~~p-----~~~i~~~ 122 (1389)
T TIGR03443 66 ---DEDIVLGTSSNKSG---------------RPFVLRLNITPELSFLQLYAKVSEEEKEGASDIGVP-----FDELSEH 122 (1389)
T ss_pred ---CCceEEEeeeCCCC---------------ceEEEEecCCCCCCHHHHHHHHHHHHHHHHhcccCC-----HHHHHHH
Confidence 67999999999984 468999999999999999999999999999998742 2222222
Q ss_pred HhhCCCCCCCccccc-eeeEeecCcccccccccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHH
Q 011748 374 AIDNPGLTPASSLRT-AVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSRE 452 (478)
Q Consensus 374 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~ 452 (478)
........ ++ .+|.+.... .+. ....++ . ......+.+.+...++++.+.+.|+.++|+++
T Consensus 123 l~~~~~~~-----~~p~lf~~~~~~----~~~----~~~~~~---~--~~~~~dl~~~v~~~~~~l~l~~~y~~~lf~~~ 184 (1389)
T TIGR03443 123 IQAAKKLE-----RTPPLFRLAFQD----APD----NQQTTY---S--TGSTTDLTVFLTPSSPELELSIYYNSLLFSSD 184 (1389)
T ss_pred hccccCCC-----CCCccEEEEeec----CCc----cccccc---c--cCCccceEEEEEecCCcEEEEEEEchhcCCHH
Confidence 21111110 11 233321000 000 000111 0 11122455555555789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCC
Q 011748 453 QLQQLIDDMKKILVEGGSFGDGETGE 478 (478)
Q Consensus 453 ~i~~~~~~~~~~L~~~~~~~~~~~~~ 478 (478)
+++.++++|..+|++++++|+.++++
T Consensus 185 ~i~~l~~~f~~lL~~~~~~p~~~l~~ 210 (1389)
T TIGR03443 185 RITIVADQLAQLLSAASSNPDEPIGK 210 (1389)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCceec
Confidence 99999999999999999999998864
No 14
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.16 E-value=1.3e-09 Score=114.82 Aligned_cols=202 Identities=15% Similarity=0.104 Sum_probs=139.1
Q ss_pred cCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccC
Q 011748 255 LNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDV 334 (478)
Q Consensus 255 l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~ 334 (478)
++++...++++.++++|+|++++++|+|...+++++ + ++++++|+++.+|+...+.. +..+|.|+|+++++..+
T Consensus 1 ~~~~~~~~l~~~~~~~~~t~~~~l~a~~~~~l~r~~--~---~~~~~~g~~~~~r~~~~~~~-~~~ig~f~n~~~lr~~~ 74 (642)
T COG1020 1 LDPELSAALRALAAEHGLTLFMVLLAAFAALLSRWS--G---QEDIVLGLPVAGRPLALPDV-EQLIGLFANTLPLRLDI 74 (642)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--C---CCCEEEeeeecCCCccccch-Hhhccchheeeeeeecc
Confidence 356778889999999999999999999999999987 5 67999999999997654433 67999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEe-ecCcccccccccccceEEee
Q 011748 335 NGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISV-FEDPIVDETNKLHQEIGLED 413 (478)
Q Consensus 335 ~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~ 413 (478)
.+..+|.++++++++.+.....|+... ...+........... ++++.+ |....+.........+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~h~~~p-----~~~l~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 143 (642)
T COG1020 75 SGRVTFAELLARLRELALGALEHQDLP-----GEQLVERLGRERSLS------EPLFDVVFVLQNGPTAGLKLPGLRVEE 143 (642)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCC-----HHHHHHHHhhhccCC------CCceeeEEEecCccccccccccccccc
Confidence 999999999999999999999998743 111212111111110 123331 11111110000111222222
Q ss_pred EEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 011748 414 YIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETG 477 (478)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~~~ 477 (478)
.... .......+.+.+. .+++.+.+.|....|+++.++++.+++..+|..++.+|+..++
T Consensus 144 ~~~~--~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (642)
T COG1020 144 LGIE--TPAAKLDLALAVV--EGGLRLSFDYARELFDAETIERELRHFLQLLAALADAPRTSLS 203 (642)
T ss_pred cccc--CcccccceEEEEE--eCceEEEEEeecccCCHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 1111 0011122333222 3389999999999999999999999999999999999985543
No 15
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=99.09 E-value=6.6e-08 Score=96.36 Aligned_cols=272 Identities=12% Similarity=0.054 Sum_probs=157.2
Q ss_pred CHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEeecccCCccccccCCCCCCchHHHHHHHHhhcCCCC
Q 011748 49 NIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWT 128 (478)
Q Consensus 49 d~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (478)
..+.|++|+.+++..++-|--|+...+++. ..+.-. ++.+.+.+.........+...... +.. .+.+-+-. ..
T Consensus 63 ~~~~Lk~sLs~~L~~~~plAGRL~~~~~g~-~~i~c~-~~Gv~fvea~~d~~l~~l~~~~~p--~~~-~~~~l~~~--~~ 135 (436)
T PLN02481 63 PVDVIKKALSKVLVHYYPLAGRLTISSEGK-LIVDCT-GEGVVFVEAEANCSIEEIGDITKP--DPE-TLGKLVYD--VP 135 (436)
T ss_pred HHHHHHHHHHHHhccccCCCCeeeeCCCCc-EEEEEc-CCCeEEEEEEecCcHHHhccccCC--CCH-HHHHhCCC--CC
Confidence 478999999999999999999987654332 222111 224444443211111100000000 000 11111100 11
Q ss_pred CCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCccccccCCCCCcchhh-c
Q 011748 129 NPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEE-F 207 (478)
Q Consensus 129 ~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~ 207 (478)
..-+. ...|++.+.+.++..++..|.+.+||.++||.|+..|++.+.+...+..... + +.+.. .
T Consensus 136 ~~~~~----~~~Pll~vQvT~F~~GG~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg~~~~~----~-------p~~dr~~ 200 (436)
T PLN02481 136 GAKNI----LEIPPLTAQVTRFKCGGFVLGLCMNHCMFDGIGAMEFVNSWGETARGLPLSV----P-------PFLDRSI 200 (436)
T ss_pred Ccccc----cccceeeeccceEecCcEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCC----C-------CCcCccc
Confidence 00011 2468888888888889999999999999999999999999999987532110 0 00000 0
Q ss_pred cCCCC-CCchh-hhcchhhhhcccccCcccCCCC-CCCCCCCcceEEEEecCHHHHHHHHHHHHhcC----CChHHHHHH
Q 011748 208 IPSGK-ANKPF-WARGVDMLGYSLNSLRLSNISF-VDADSPRFSQVLRLQLNRDETGRLVEGCKSRG----IKLCGALAA 280 (478)
Q Consensus 208 ~~~~~-~~~~~-w~~~l~~~~~~~~~~~~~~lp~-~~~~~~~~~~~~~~~l~~~~~~~l~~~~r~~~----vT~~~~l~a 280 (478)
+.... ....+ |.... +....+. .............+.++++..++|++.|...+ +|-+.++.|
T Consensus 201 l~~~~pp~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~a~~~~~~~~~S~~dal~A 270 (436)
T PLN02481 201 LRARNPPKIEFPHQEFA----------EIEDVSGTSKLYDDEELVYKSFCFDPEKLEKLKSMALEDGVIKKCSTFEALTA 270 (436)
T ss_pred CCCCCCCCCCcCccccc----------cccCCccccccccccCceEEEEEECHHHHHHHHHhcccccCCCCcChHHHHHH
Confidence 10000 00000 00000 0000000 00001112334568999999999999986533 788999999
Q ss_pred HHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCC--CchhHHHHHHHHHHHHHhh
Q 011748 281 AGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVN--GEEELWELATRSYTSFANA 354 (478)
Q Consensus 281 a~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~--~~~~f~~l~~~v~~~~~~~ 354 (478)
-++..+.+-.... ......+..++|+|++..++++.+.+|+.+...-...... .+.++..+|..|++.+.+.
T Consensus 271 ~iW~~~~rA~~~~--~~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~~l~~~~l~~~A~~Ir~~i~~~ 344 (436)
T PLN02481 271 FVWRARTKALKML--PDQQTKLLFAVDGRSRFNPPLPKGYFGNGIVLTNALTTAGELLENPLSHAVGLVQDAIKMV 344 (436)
T ss_pred HHHHHHHhccCCC--CCCeEEEEEEEcCccCCCCCCCCCceeeeeeeccccccHHHHhhCCHHHHHHHHHHHHHHH
Confidence 9988888754222 2346888999999999988888889998765432222222 1367899999999888665
No 16
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=98.99 E-value=2.3e-07 Score=92.43 Aligned_cols=272 Identities=15% Similarity=0.102 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHHHHHhCcccceeeccCCC-CcceEecCCCCCCceEeecccCCccccccCCCCCCchHHHHHHHHhhcCC
Q 011748 48 PNIQLLQTALNNLQNNHPILRSKLHSSAD-AKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNT 126 (478)
Q Consensus 48 ld~~~L~~A~~~li~rhp~Lr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (478)
++.+.|++|+.+++..+.-|.-|+...++ ........ +.+.+...........+. +.... ....+.+ |
T Consensus 51 ~~~~~Lk~sLs~~L~~~yplaGRl~~~~~g~~~i~c~~---~Gv~fv~A~~~~~l~~~~--~~~~~---~~~~~l~---P 119 (431)
T PLN02663 51 FDPQVMKEALSKALVPFYPMAGRLRRDEDGRIEIDCNA---EGVLFVEADTPSVIDDFG--DFAPT---LELRQLI---P 119 (431)
T ss_pred cCHHHHHHHHHHHHhhccccceeeeECCCCCEEEEECC---CCceEEEEecCCCHHHhh--ccCCC---HHHHhhc---C
Confidence 57899999999999999999999986543 33322222 234444331111000000 00000 0111110 2
Q ss_pred CCCC-CCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCccccccCCCCCcchh
Q 011748 127 WTNP-SHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIE 205 (478)
Q Consensus 127 ~~~~-~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ 205 (478)
.... .+. ...|++.+.+..+..++..|.+++||.++||.|+..|++.+.+...+.... . ++. .....+.
T Consensus 120 ~~~~~~~~----~~~P~l~vQvt~F~cGG~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg~~~~-~---~p~--~dr~~l~ 189 (431)
T PLN02663 120 TVDYSGGI----SSYPLLVLQVTHFKCGGVSLGVGMQHHAADGFSGLHFINTWSDMARGLDLT-I---PPF--IDRTLLR 189 (431)
T ss_pred CCCCcccc----ccCceEEEEEEEeccCCEEEEEEecccccchHHHHHHHHHHHHHhcCCCCC-C---CCc--cCccccC
Confidence 2110 011 346899999988888899999999999999999999999999988653111 0 000 0000000
Q ss_pred hccCCCCCCchhhhcchhhhhcccccCcccCCCCC-CCCCCCcceEEEEecCHHHHHHHHHHHHhc----CCChHHHHHH
Q 011748 206 EFIPSGKANKPFWARGVDMLGYSLNSLRLSNISFV-DADSPRFSQVLRLQLNRDETGRLVEGCKSR----GIKLCGALAA 280 (478)
Q Consensus 206 ~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~-~~~~~~~~~~~~~~l~~~~~~~l~~~~r~~----~vT~~~~l~a 280 (478)
..-+.... +....+. ....+... ....+.......+.++++..++|++.|.+. .+|-+.++.|
T Consensus 190 ~~~p~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~~~~~~~~~~~S~~dalsA 257 (431)
T PLN02663 190 ARDPPQPA--------FHHVEYQ----PPPSMKTPLETSKPENTTVSIFKLTRDQLNTLKAKSKEDGNTISYSSYEMLAG 257 (431)
T ss_pred CCCCCCCC--------ccccccc----CCCccccccccCCCCCceEEEEEECHHHHHHHHhhCcccCCCcccchHHHHHH
Confidence 00000000 0000000 00000000 000011223456889999999999998753 3688899988
Q ss_pred HHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCCC--chhHHHHHHHHHHHHHhh
Q 011748 281 AGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNG--EEELWELATRSYTSFANA 354 (478)
Q Consensus 281 a~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~~--~~~f~~l~~~v~~~~~~~ 354 (478)
-++..+.+-.... ......+..++|+|++..++.+...+|+.+........... ..+++.++..+++.+.+.
T Consensus 258 ~lW~~~~rA~~~~--~~~~~~~~~~vd~R~rl~p~lp~~Y~GN~~~~~~~~~~~~el~~~~l~~~a~~ir~ai~~~ 331 (431)
T PLN02663 258 HVWRSACKARGLP--DDQETKLYIATDGRSRLRPQLPPGYFGNVIFTATPIAVAGELQSKPTWYAAGKIHDALVRM 331 (431)
T ss_pred HHHhhhhhcccCC--CccceEEEEEecCCcCCCCCCCCCcccceEEecccccchhhhhhCCHHHHHHHHHHHHHHh
Confidence 8888888755222 24578889999999999887878888987655433222211 235788999999887665
No 17
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=98.98 E-value=1.7e-07 Score=93.73 Aligned_cols=269 Identities=15% Similarity=0.136 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHhCcccceeeccCCC-CcceEecCCCCCCceEeecccCCccccccCCCCCCchHHHHHHHHhhcCCCC
Q 011748 50 IQLLQTALNNLQNNHPILRSKLHSSAD-AKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWT 128 (478)
Q Consensus 50 ~~~L~~A~~~li~rhp~Lr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (478)
.+.|++|+.+++..++-|--|+...++ ........ .-+.+...........+... .....+ .+-+ |..
T Consensus 54 ~~~Lk~sLs~~L~~fyplAGRl~~~~~g~~~i~c~~---~Gv~fveA~~~~~l~~~~~~-~~~~~~----~~l~---P~~ 122 (447)
T PLN03157 54 IEILKDSLSRALVPFYPLAGRLRWIGGGRLELECNA---MGVLLIEAESEAKLDDFGDF-SPTPEF----EYLI---PSV 122 (447)
T ss_pred HHHHHHHHHHHHhhccccCEEEEEcCCCcEEEEECC---CCeEEEEEEeCCcHHHhhcc-CCCHHH----Hhhc---CCC
Confidence 689999999999999999999865433 33333322 23444433111100000000 001111 1110 111
Q ss_pred -CCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCccccccCCCCCcchhh-
Q 011748 129 -NPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEE- 206 (478)
Q Consensus 129 -~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~- 206 (478)
...+. ...|++.+.+..+..++..|.+++||.++||.|+..|++.+.+..++..... + +.+..
T Consensus 123 ~~~~~~----~~~Pll~vQvT~F~cGG~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg~~~~~----~-------P~~dR~ 187 (447)
T PLN03157 123 DYTKPI----HELPLLLVQLTKFSCGGISLGLGISHAVADGQSALHFISEWARIARGEPLGT----V-------PFLDRK 187 (447)
T ss_pred Cccccc----ccCceEEEEEEEecCCCEEEEEEeeccccchHhHHHHHHHHHHHhcCCCCCC----C-------CccCcc
Confidence 00001 3469999998887888999999999999999999999999999887532110 0 10100
Q ss_pred ccCC--CC-CCchhhhcchhhhhcccccCcccCCCCCC--CCCCCcceEEEEecCHHHHHHHHHHHHhc-------CCCh
Q 011748 207 FIPS--GK-ANKPFWARGVDMLGYSLNSLRLSNISFVD--ADSPRFSQVLRLQLNRDETGRLVEGCKSR-------GIKL 274 (478)
Q Consensus 207 ~~~~--~~-~~~~~w~~~l~~~~~~~~~~~~~~lp~~~--~~~~~~~~~~~~~l~~~~~~~l~~~~r~~-------~vT~ 274 (478)
.+.. .. ....+... .+. .++....... ...+.......+.++++..++|++.|... .+|-
T Consensus 188 ~l~~~~~p~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~a~~~~~~~~~~~~St 259 (447)
T PLN03157 188 VLRAGEPPLSAPVFDHA-----EFS---HPPLLIGEQDNVEERKKKTTVAMLKLSKDQVEKLKDKANESRSSDNGRPYTR 259 (447)
T ss_pred cccCCCCCCcCCccChh-----hcc---cCcccccccccccccccCceEEEEEECHHHHHHHHHhCcccccccCCCCccH
Confidence 0000 00 00000000 000 0000000000 00011223457899999999999998653 3688
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCCC--chhHHHHHHHHHHHHH
Q 011748 275 CGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNG--EEELWELATRSYTSFA 352 (478)
Q Consensus 275 ~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~~--~~~f~~l~~~v~~~~~ 352 (478)
+.++.|-++..+.+-+... ......+..++|+|++..++.+.+.+|+.+........... +.++..+|..|++.+.
T Consensus 260 ~dalsA~lWr~~~rAr~~~--~~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~el~~~~l~~~a~~Ir~ai~ 337 (447)
T PLN03157 260 YETVAGHVWRSACKARGHE--PEQPTALGICVDSRSRMQPPLPDGYFGNATLDVIAESTSGELVSKPLGYASSKIREAIE 337 (447)
T ss_pred HHHHHHHHHHHHHHHccCC--CCCceEEEEEecCCCCCCCCCCCCcccceeeeccchhhHHHHhhCCHHHHHHHHHHHHH
Confidence 8999998888888765222 24578899999999999888888899988765433222211 2468889999998886
Q ss_pred hh
Q 011748 353 NA 354 (478)
Q Consensus 353 ~~ 354 (478)
+.
T Consensus 338 ~~ 339 (447)
T PLN03157 338 KV 339 (447)
T ss_pred Hh
Confidence 65
No 18
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=98.95 E-value=2.1e-07 Score=92.84 Aligned_cols=260 Identities=15% Similarity=0.063 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEeecccCCccccccCCCCCCchHHHHHHHHhhcCCCCC
Q 011748 50 IQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTN 129 (478)
Q Consensus 50 ~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (478)
.+.|+.|+.+++..++-|--|+... ......+ ..+.+...........+-. ... . +.+.+-+ |...
T Consensus 58 ~~~Lk~sLs~~L~~fyplAGRl~~~---~~i~cn~---~Gv~fveA~~~~~l~d~l~--~~~--~-~~~~~l~---p~~~ 123 (444)
T PLN00140 58 SIQLKRSLSETLSTFYPFSGRVKDN---LIIDNYE---EGVPFFETRVKGSLSDFLK--HPQ--L-ELLNKFL---PCQP 123 (444)
T ss_pred HHHHHHHHHHHHhhhhccCccccCC---ceeEccC---CCceEEEEEecCcHHHhcC--CCC--H-HHHHhhC---CCCc
Confidence 4889999999999999999888753 1111111 1222222210000000000 000 0 1111111 2211
Q ss_pred C---CCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCccccccCCCCCcchhh
Q 011748 130 P---SHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEE 206 (478)
Q Consensus 130 ~---~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 206 (478)
. .+. ...|++.+.+..+..++..|.+++||.++||.|+..|++.+.+..++.... ...+.+..
T Consensus 124 ~~~~~~~----~~~Pll~vQvT~F~cGG~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg~~~~----------~~~P~~dr 189 (444)
T PLN00140 124 FSYESDP----EAIPQVAIQVNTFDCGGIALGLCFSHKIIDAATASAFLDSWAANTRGHYSE----------VINPDLFE 189 (444)
T ss_pred ccccCCc----cCCceEEEEEEEeccCcEEEEeeeceEcccHHHHHHHHHHHHHHhcCCCCC----------CCCccccc
Confidence 0 011 235999999999888999999999999999999999999999998743110 00111111
Q ss_pred ---ccCCCCC-CchhhhcchhhhhcccccCcccCCCCCCCCCCCcceEEEEecCHHHHHHHHHHHHhc---CCChHHHHH
Q 011748 207 ---FIPSGKA-NKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSR---GIKLCGALA 279 (478)
Q Consensus 207 ---~~~~~~~-~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~~r~~---~vT~~~~l~ 279 (478)
..+.... ...+. ...+ .....+.+....++.++++..++|++.|... ..|-+.++.
T Consensus 190 ~~~~~p~~~~~~~~~~----------------~~~~-~~~~~~~~~v~~~f~fs~~~I~~LK~~~~~~~~~~~S~~e~vs 252 (444)
T PLN00140 190 ASSFFPPLNSFPVQFL----------------LLME-ENWFFKENYITKRFVFDAKAIATLRAKAKSKRVPNPSRIETLS 252 (444)
T ss_pred ccccCCCCCccccccc----------------cccc-ccccccCceEEEEEEECHHHHHHHHHhcccccCCCCchhHHHH
Confidence 0000000 00000 0000 0000111223456899999999999998753 467788888
Q ss_pred HHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCC-CchhHHHHHHHHHHHHHhh
Q 011748 280 AAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVN-GEEELWELATRSYTSFANA 354 (478)
Q Consensus 280 aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~-~~~~f~~l~~~v~~~~~~~ 354 (478)
|-++..+.+-++..........+..++|+|++..++++.+.+|+.+.......... ....+..++..|++.+.+.
T Consensus 253 A~iWr~~~rA~~~~~~~~~~~~~~~~vn~R~Rl~PpLP~~y~GN~i~~~~~~~~~~~~~~~l~~~a~~Ir~~i~~~ 328 (444)
T PLN00140 253 CFIWKCCTAASRSISAAPRPSISVHAVNIRQRTKPPMSRYSIGNLFWWALAAADPADTKIELNELVSLTRESIANY 328 (444)
T ss_pred HHHHHHHHHHhhhccCCCCceEEEEEEeccccCCCCCCcccccchhhhheecccccccccchHHHHHHHHHHHHHH
Confidence 88877776643111111235788899999999988888888898764332221111 1367899999998888765
No 19
>PF03007 WES_acyltransf: Wax ester synthase-like Acyl-CoA acyltransferase domain; InterPro: IPR004255 This entry represents the N terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=98.88 E-value=2.1e-08 Score=92.48 Aligned_cols=114 Identities=14% Similarity=0.229 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHhCcccceeeccCC---CCcceEecCCCCC--CceEeecccCCccccccCCCCCCchHHHHHHHHh
Q 011748 48 PNIQLLQTALNNLQNNHPILRSKLHSSA---DAKTFSFITPPEP--HIQIQHFDISSTSQTISDKTGAVSPFQLILEHEL 122 (478)
Q Consensus 48 ld~~~L~~A~~~li~rhp~Lr~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (478)
.+.+.|.+.+..-+..+|.||.++.... +.+.|+.....+. ++....+ ......+++.+.+.+..
T Consensus 36 ~~~~~l~~~~~~r~~~~p~fr~rv~~~~~~~~~p~W~~d~~fDl~~Hv~~~~l----------~~pg~~~~l~~~v~~l~ 105 (263)
T PF03007_consen 36 LDVERLRARLEARLARHPRFRQRVVRVPFGLGRPRWVEDPDFDLDYHVRRVAL----------PAPGDRAELQALVSRLA 105 (263)
T ss_pred chHHHHHHHHHHhhccCCccccceecCCCCCCCEEEEECCCCChHHceEEecC----------CCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999998743 2344443221111 2211111 11123355666565554
Q ss_pred hcCCCCCCCCCCCCCCCCCeEEEEEEe-cCCCceEEEEEecceecchhhHHHHHHHHHHH
Q 011748 123 NRNTWTNPSHQSNTNSDSNLFNVSIYT-PSETQWVVTLRLHTSICDRASAAAVSKELLRL 181 (478)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~pl~r~~l~~-~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~ 181 (478)
++ |++ .+.|+|+++++. +.++++.+++++||+++||.|+..++..++..
T Consensus 106 ~~-pLd---------~~rPlWe~~li~g~~~g~~Al~~k~HHal~DG~~~~~l~~~l~~~ 155 (263)
T PF03007_consen 106 ST-PLD---------RSRPLWEVHLIEGLEGGRFALVLKVHHALADGVSLMRLLAALLDR 155 (263)
T ss_pred cC-CCC---------CCCCCcEEEEEecCCCCcEEEEEeehhhhhhhHhHHHHHHHHhCC
Confidence 43 443 367999999999 45678999999999999999999888877653
No 20
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=98.88 E-value=2.1e-08 Score=100.31 Aligned_cols=268 Identities=15% Similarity=0.147 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEeecccCCccccccCCCCCCchHHHHHHHHhhcCCCCC
Q 011748 50 IQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTN 129 (478)
Q Consensus 50 ~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (478)
.+.|++|+.+++..+|.|--|+...++.......+ .-+.+................ ..... ...+- |. .
T Consensus 55 ~~~Lk~sLs~~L~~~~~lAGrl~~~~~~~~i~c~d---~Gv~f~~a~~~~~l~~~~~~~-~~~~~----~~~l~--p~-~ 123 (432)
T PF02458_consen 55 VDNLKESLSKTLVHYYPLAGRLRDPDGRLEIDCND---DGVEFVEAEADGTLDDLLDLE-PPSEF----LRDLV--PQ-L 123 (432)
T ss_dssp HHHHHHHHHHHHTTSGGGGSEEESSCTTTEEEECT---TTEEEEEEEESS-HHHHCSSS-CCGGG----GGGGS--SS--
T ss_pred HHHHHHHHHHhHhhCcccCcEEcccccceEEEEec---CCCEEEEEecccceeeccccc-cchHH----HHHHh--hh-c
Confidence 57899999999999999999993332233333322 234444432211111111101 01110 01110 11 1
Q ss_pred CCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCccccccCCCCCcchhh-cc
Q 011748 130 PSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEE-FI 208 (478)
Q Consensus 130 ~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~ 208 (478)
++... ....|++++.+.++.+++..|.+.+||.++||.|+..|++.+.+.+++..... . .+ .+.. .+
T Consensus 124 ~~~~~--~~~~Pll~vQvt~f~~GG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~~~~~--~-~p-------~~~r~~~ 191 (432)
T PF02458_consen 124 PVSSE--GEDAPLLAVQVTRFKCGGLALGVSFHHAVADGTGFSQFLKAWAEICRGGSPPS--P-PP-------VFDRSLL 191 (432)
T ss_dssp SSSEE--ETTEBSEEEEEEEETTTEEEEEEEEETTT--HHHHHHHHHHHHHHHHTTCHHH--H-HH-------CHSSTTS
T ss_pred ccCCc--ccccceeEeeeeeecccceeeeeeceeccCcccchhHHHHHHHhhhcCCcccc--c-cc-------ccchHHh
Confidence 11110 02358999999888888999999999999999999999999999998751110 0 00 0000 00
Q ss_pred CCCCCCchhhhcchhhhhcccccCcccCCCCCCCCCCCcceEEEEe---cCHHHHHHHHHHHHhcCC----ChHHHHHHH
Q 011748 209 PSGKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQ---LNRDETGRLVEGCKSRGI----KLCGALAAA 281 (478)
Q Consensus 209 ~~~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~---l~~~~~~~l~~~~r~~~v----T~~~~l~aa 281 (478)
... ..+.- .. ...... ..+..............+. ++.+..++++..+...+. |-+.++.|-
T Consensus 192 ~~~--~~p~~--~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~lk~~~~~~~~~~~~St~d~l~A~ 260 (432)
T PF02458_consen 192 LPP--NPPSV--SF-----PPSEFE--PFPPEPAPPSSKCVSKTFVFSKLSIEKLKKLKSEALSSSSGKPVSTFDALTAL 260 (432)
T ss_dssp S-S--TTHHH--GC-----TCSCHT--TC--TTS---SSEEEEEEEEEHHHHHHHHHHHHHHSTTTSTT-S-HHHHHHHH
T ss_pred hhc--cCccc--cc-----cccccc--cccccccccccccccceeeecccHHHHHHHHhhccccccCCCCCCeeEEEEEe
Confidence 000 00000 00 000000 0110001111111122334 446666666666654422 788999998
Q ss_pred HHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCC--CchhHHHHHHHHHHHHHh
Q 011748 282 GLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVN--GEEELWELATRSYTSFAN 353 (478)
Q Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~--~~~~f~~l~~~v~~~~~~ 353 (478)
++..+.+.+... ......+..++|+|++..++.+.+.+|+.+.......... ...++..+++.+++.+.+
T Consensus 261 lWr~~~rar~~~--~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~el~~~~l~~~a~~ir~ai~~ 332 (432)
T PF02458_consen 261 LWRCITRARGLP--SDETSRLSFAVDCRKRLNPPLPEGYFGNAVFFAFASATAGELLSEPLSDIARLIREAIAK 332 (432)
T ss_dssp HHHHHHHHHCHT--TTTCEEEEEEEETHHHSSS---TTB-S--EEEEEEEEEHHHHHHSHHHHHHHHHHHHHCH
T ss_pred hhhhhccccccc--cccccccccccccCCCcCCCcceeecCceEeecccccchhhhhhhhhhHHHHhhhhhhhc
Confidence 888888765222 2345899999999999887788889998776554443332 145788888888888776
No 21
>PF07428 Tri3: 15-O-acetyltransferase Tri3; InterPro: IPR009992 This family represents a conserved region approximately 400 residues long within 15-O-acetyltransferase (Tri3), which seems to be restricted to ascomycete fungi. In Fusarium sporotrichioides, this is required for acetylation of the C-15 hydroxyl group of trichothecenes in the biosynthesis of T-2 toxin [].; PDB: 3FP0_A 3FOT_A.
Probab=98.38 E-value=4.8e-06 Score=75.65 Aligned_cols=172 Identities=14% Similarity=0.160 Sum_probs=86.3
Q ss_pred CceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCcccc-----ccC-CCCCcchhhccCCCCC-Cchhhhc----c
Q 011748 153 TQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEY-----DRK-GEVSLGIEEFIPSGKA-NKPFWAR----G 221 (478)
Q Consensus 153 ~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~-~~~~w~~----~ 221 (478)
....++|.+||+..||.|..+|..+|++............+. +.+ ..+.++.-+.+..... ...+... +
T Consensus 167 ~~V~~vFhsnHL~wDGis~r~FvGDlfR~l~~~i~~~~~~e~~~~~WG~Ei~NL~~pvld~lk~~v~tlg~EFd~~~~qy 246 (413)
T PF07428_consen 167 ATVELVFHSNHLFWDGISCRKFVGDLFRLLGELIGASDKAELPKIQWGTEIKNLSPPVLDALKDDVSTLGSEFDDTCTQY 246 (413)
T ss_dssp -EEEEEEEE-GGG--HHHHHHHHHHHHHHHCCTTT---GGGS----TTTTGGGS---TGGGBSS-GGG--HHHHHHHHHH
T ss_pred CEEEEEEecccceeccccchhhhHHHHHHHHhhcCCCcccccccCcchhhhhhcChHHHHHHhcchhhhhhHHHHHHHHH
Confidence 468999999999999999999999999999874321110000 100 1122222232222111 0111111 1
Q ss_pred hh--hhhcccccCcccCCCCCCCCCCCcceEEEEecCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHhcccCCCCC-
Q 011748 222 VD--MLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSR---GIKLCGALAAAGLIAARSTKYFPSH- 295 (478)
Q Consensus 222 l~--~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~~r~~---~vT~~~~l~aa~~~~l~~~~~~~~~- 295 (478)
.. +.+|.. -.+|+.. + ...++.+...++.++..+|++.||.. +.|++++-+||+.+||-+.. .+..
T Consensus 247 ~~aL~~~y~s-----~Gl~~~p-g-~glpr~~i~~fs~~eS~Ai~k~vKt~~gP~~TisHL~qAAvllALL~~~-~P~d~ 318 (413)
T PF07428_consen 247 TSALMANYKS-----WGLPFNP-G-LGLPRCIIHSFSAEESIAIKKAVKTRLGPKYTISHLGQAAVLLALLRDL-KPTDL 318 (413)
T ss_dssp HHHHHHHHCS-------CE---------EEEEEEE--HHHHHHHHHHHHHHT-TT--HHHHHHHHHHHHHHHH-------
T ss_pred HHHHhhcccc-----cCCCCCC-C-CCCcceecccCChhhhHHHHHHHhcccCCCcCHHHHHHHHHHHHHHhcc-CCCCC
Confidence 11 111111 1122211 1 12556788999999999999999976 78999999999999988753 1211
Q ss_pred -CCCceEEEeecccCCcCCCCCCCCceeeeeeeccccc
Q 011748 296 -QREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTH 332 (478)
Q Consensus 296 -~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~ 332 (478)
+.+-++.-++|+||+++.++...+..+.+-.+.++++
T Consensus 319 ~D~~~~isp~~v~GRR~Lr~~~a~~~Y~~cqt~a~V~~ 356 (413)
T PF07428_consen 319 PDSQAFISPMPVNGRRWLRPKIAKNYYAICQTAAVVRF 356 (413)
T ss_dssp -TT--EEEEEEEE-GGGB-HHHHTS--S--EEEEEEEE
T ss_pred CCcceEecccccCcchhcccchhhhhhhhhhccceEEE
Confidence 1234888999999999876433344444444444443
No 22
>PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A.
Probab=95.29 E-value=0.062 Score=40.38 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=24.9
Q ss_pred CeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHH
Q 011748 425 PSIAIFDTIRDGWLDCACVYPSPLHSREQLQQL 457 (478)
Q Consensus 425 ~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~ 457 (478)
..+.+.+...++++.+.+.|++++|++++|++|
T Consensus 59 ~DL~l~~~~~~~~l~~~~~Y~~~lf~~~ti~~~ 91 (91)
T PF13745_consen 59 FDLTLEVREDGDGLRLQLEYNTDLFSEETIERM 91 (91)
T ss_dssp SSEEEEEEE-SS-EEEEEEEETTT--HHHHHHH
T ss_pred eeEEEEEEecCCeEEEEEEEEhHhCCHHHHhcC
Confidence 456777777789999999999999999999986
No 23
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=94.65 E-value=1.5 Score=45.59 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=30.2
Q ss_pred CeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhc
Q 011748 436 GWLDCACVYPSPLHSREQLQQLIDDMKKILVEGG 469 (478)
Q Consensus 436 g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~ 469 (478)
.-|.+++.|+..++|-+++.+|+..+..+|+...
T Consensus 550 ~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~ 583 (590)
T TIGR02927 550 QMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAA 583 (590)
T ss_pred eeEEEeeeccchhcCcHHHHHHHHHHHHHHhCcc
Confidence 4578999999999999999999999999998643
No 24
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=94.35 E-value=2.1 Score=38.53 Aligned_cols=172 Identities=13% Similarity=0.121 Sum_probs=87.4
Q ss_pred EEEEecCHHHHHHHHHHHHh------cCCChHHHHHHHHHHHHhcccCCCCC---CC-----CceEEEeecccCCcCCCC
Q 011748 250 VLRLQLNRDETGRLVEGCKS------RGIKLCGALAAAGLIAARSTKYFPSH---QR-----EKYAVVTLVDCRSILEPV 315 (478)
Q Consensus 250 ~~~~~l~~~~~~~l~~~~r~------~~vT~~~~l~aa~~~~l~~~~~~~~~---~~-----~~~~~~~~v~~R~~~~~~ 315 (478)
.+...++.+...++++.-+. .++|++.++.-|.+.+|.++-.+... +. +.+-+|+.++..
T Consensus 31 ~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~~~~~~~i~~~~~vnIgvAV~~~------ 104 (231)
T PF00198_consen 31 TLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNASWDGDGEIVLYERVNIGVAVDTP------ 104 (231)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEEEETTSEEEEESS--EEEEEEET------
T ss_pred EEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccccccccceeeeeeEEEEEEEEcC------
Confidence 34456666666666554433 28999999999999999885422110 00 122333333221
Q ss_pred CCCCceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeec
Q 011748 316 LSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFE 395 (478)
Q Consensus 316 ~~~~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 395 (478)
+ |.+ +|+ ++-....++.++++++++-..+..+..-...+ +....|++
T Consensus 105 --~---GL~---vPV-Ir~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d----------------------~~g~Tfti-- 151 (231)
T PF00198_consen 105 --D---GLV---VPV-IRDADKKSLAEIAKELRDLAERAREGKLTPED----------------------LQGGTFTI-- 151 (231)
T ss_dssp --T---EEE---EEE-ETTGGGS-HHHHHHHHHHHHHHHHTT---GGG----------------------GSS-SEEE--
T ss_pred --C---CEE---EEE-EeCCccccHHHHHHHHhhhhccchhhhhhhhh----------------------hhccceee--
Confidence 1 221 232 22234579999999998777666554321111 11123333
Q ss_pred Ccccccc---------cccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 011748 396 DPIVDET---------NKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILV 466 (478)
Q Consensus 396 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~ 466 (478)
+|.|... +.+..-+.+..+.-.... .+.. ......+.+++.|+..+++-+++.+|+..+...|+
T Consensus 152 sNlG~~g~~~~~pii~~pq~ail~vG~i~~~p~~--~~~~-----~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le 224 (231)
T PF00198_consen 152 SNLGMFGVESFTPIINPPQVAILGVGAIRDRPVV--EDGE-----VVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLE 224 (231)
T ss_dssp EEGGGTT-SCEE----TTSSEEEEEEEEEEEEEE--ETTC-----EEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHH
T ss_pred eecCCCCcceeEccCCcccceEEEecceEEEEEE--Eecc-----ceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHh
Confidence 4444210 111111222211100000 0000 11235688999999999999999999999998876
Q ss_pred H
Q 011748 467 E 467 (478)
Q Consensus 467 ~ 467 (478)
.
T Consensus 225 ~ 225 (231)
T PF00198_consen 225 N 225 (231)
T ss_dssp S
T ss_pred C
Confidence 4
No 25
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=94.12 E-value=1.8 Score=41.57 Aligned_cols=32 Identities=6% Similarity=0.100 Sum_probs=28.3
Q ss_pred CeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 436 GWLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 436 g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
.-|.+++.|+..++|-+++.+|+..+...|+.
T Consensus 310 ~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~ 341 (347)
T PRK14843 310 PIMSLGLTIDHRVVDGMAGAKFMKDLKELIET 341 (347)
T ss_pred eEEEEEEecchhhhCcHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999998888764
No 26
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=94.01 E-value=0.58 Score=40.05 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=25.0
Q ss_pred EEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 156 VVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 156 ~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
=|.+.+||+.+||+-...|++.|-..++.
T Consensus 185 Plavq~hHA~vDG~Hi~~l~~~lQ~~~~~ 213 (219)
T COG4845 185 PLAVQAHHANVDGFHIGQLFDQLQTLFSP 213 (219)
T ss_pred eEEEEecccccchhhHHHHHHHHHHHhcC
Confidence 46788999999999999999999877753
No 27
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=93.79 E-value=2.3 Score=42.10 Aligned_cols=32 Identities=3% Similarity=0.050 Sum_probs=27.9
Q ss_pred CeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 436 GWLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 436 g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
..|.|++.|+..++|-+.+.+|+..+..+|+.
T Consensus 376 ~~m~lslt~DHRviDGa~aa~Fl~~lk~~le~ 407 (416)
T PLN02528 376 SIMTVTIGADHRVLDGATVARFCNEWKSYVEK 407 (416)
T ss_pred eEEEEeEeccchhcCcHHHHHHHHHHHHHHhC
Confidence 35779999999999999999999998887763
No 28
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=93.69 E-value=3.1 Score=41.32 Aligned_cols=171 Identities=10% Similarity=0.078 Sum_probs=91.0
Q ss_pred EEEecCHHHHHHHHHHHHh-------cCCChHHHHHHHHHHHHhcccCCCCCC-------CCceEEEeecccCCcCCCCC
Q 011748 251 LRLQLNRDETGRLVEGCKS-------RGIKLCGALAAAGLIAARSTKYFPSHQ-------REKYAVVTLVDCRSILEPVL 316 (478)
Q Consensus 251 ~~~~l~~~~~~~l~~~~r~-------~~vT~~~~l~aa~~~~l~~~~~~~~~~-------~~~~~~~~~v~~R~~~~~~~ 316 (478)
...+++.+...++++..+. .++|++.++.-|.+.+|.++-.+...- ...+-||+.++.-+
T Consensus 262 ~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIGvAV~t~~------ 335 (463)
T PLN02226 262 TFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSK------ 335 (463)
T ss_pred EEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCEEEEeCcccEEEEEECCC------
Confidence 4467777677777666552 268999999999999999864221100 01233333333210
Q ss_pred CCCceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecC
Q 011748 317 SDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFED 396 (478)
Q Consensus 317 ~~~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~ 396 (478)
|.+ +|+.-+. ...++.++++++++-..+.....-...+ +....|.+ +
T Consensus 336 -----GLv---VPVIr~a-d~~sl~eIa~ei~~L~~kAR~gkL~~~d----------------------l~GGTfTI--S 382 (463)
T PLN02226 336 -----GLV---VPVIRGA-DKMNFAEIEKTINGLAKKANEGTISIDE----------------------MAGGSFTV--S 382 (463)
T ss_pred -----CEE---eccCCCc-ccCCHHHHHHHHHHHHHHHHcCCCCHHH----------------------hCCCeEEE--E
Confidence 111 3443333 4568999999999777666544321110 11123333 4
Q ss_pred cccccc---------cccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 397 PIVDET---------NKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 397 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
|.|... +.+..-+.+..+.. . +.+.-.......-|.+++.||..++|-+++.+|+..+..+|+.
T Consensus 383 NlG~~Gv~~ftPIInpPqvAILgvG~i~~---~----pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~ 455 (463)
T PLN02226 383 NGGVYGSLISTPIINPPQSAILGMHSIVS---R----PMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVED 455 (463)
T ss_pred CCCcccccceeccccCCcEEEEEcccceE---E----EEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcC
Confidence 444210 00000011110000 0 0000000011245889999999999999999999998888764
No 29
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=93.32 E-value=0.87 Score=40.14 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=19.4
Q ss_pred eEEEEEecceecchhhHHHHHHHH
Q 011748 155 WVVTLRLHTSICDRASAAAVSKEL 178 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l 178 (478)
.=|.+.+||+++||.-+..|+++|
T Consensus 182 mPvsiqvhHa~~DG~Hv~~F~~~l 205 (206)
T PF00302_consen 182 MPVSIQVHHALVDGYHVGQFFEEL 205 (206)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHH
T ss_pred EEEEEEEecccccHHHHHHHHHHh
Confidence 557889999999999999999886
No 30
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=93.29 E-value=3.4 Score=41.12 Aligned_cols=169 Identities=9% Similarity=0.045 Sum_probs=90.9
Q ss_pred EEEecCHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHhcccCCCCC-------CCCceEEEeecccCCcCCCCCCC
Q 011748 251 LRLQLNRDETGRLVEGCKS-----RGIKLCGALAAAGLIAARSTKYFPSH-------QREKYAVVTLVDCRSILEPVLSD 318 (478)
Q Consensus 251 ~~~~l~~~~~~~l~~~~r~-----~~vT~~~~l~aa~~~~l~~~~~~~~~-------~~~~~~~~~~v~~R~~~~~~~~~ 318 (478)
+...++.+...++++..+. .++|++.+|.=|.+.+|.++-.+... ....+-+|+.++...
T Consensus 235 ~~~evd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~-------- 306 (435)
T TIGR01349 235 VSIECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPD-------- 306 (435)
T ss_pred EEEEEEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCC--------
Confidence 4456776677766666553 47999999999999999985422110 011233444443211
Q ss_pred CceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCcc
Q 011748 319 DYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPI 398 (478)
Q Consensus 319 ~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 398 (478)
|.+ +|+.-.. ...++.++++++++-........-...+ +....|.+ +|+
T Consensus 307 ---GL~---vPvi~~a-~~~sl~eia~~i~~l~~~ar~~~L~~~d----------------------~~ggTfTI--SNl 355 (435)
T TIGR01349 307 ---GLI---TPIVRNA-DAKGLSTISNEIKDLAKRARNNKLKPEE----------------------FQGGTFTI--SNL 355 (435)
T ss_pred ---CeE---ECCCCCc-ccCCHHHHHHHHHHHHHHHhcCCCChhh----------------------cCCCeEEE--ecC
Confidence 221 3432233 4569999999998777665443211110 11122333 444
Q ss_pred cccc---------cccccceEEeeEEEEeecccccCeEEEE--E---EEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHH
Q 011748 399 VDET---------NKLHQEIGLEDYIGCSSVHGVGPSIAIF--D---TIRDGWLDCACVYPSPLHSREQLQQLIDDMKKI 464 (478)
Q Consensus 399 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~ 464 (478)
|... +.+..-+.+..+.. ...+. . .....-|.+++.|+..++|-+++.+|+..+..+
T Consensus 356 G~~G~~~~tpiin~pq~aIlgvG~i~~---------~pv~~~~~~~~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~ 426 (435)
T TIGR01349 356 GMFGIKDFTAIINPPQACILAVGAVED---------VAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKY 426 (435)
T ss_pred CccCccceECccCCCceEEEEcccceE---------EeEEeCCccceeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHH
Confidence 4210 00000011111000 00000 0 111235789999999999999999999998888
Q ss_pred HHH
Q 011748 465 LVE 467 (478)
Q Consensus 465 L~~ 467 (478)
|+.
T Consensus 427 lE~ 429 (435)
T TIGR01349 427 LEN 429 (435)
T ss_pred HhC
Confidence 764
No 31
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=93.26 E-value=1.2 Score=39.48 Aligned_cols=30 Identities=17% Similarity=0.383 Sum_probs=25.7
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
.=+.+.+||+++||.-+..|+++|-+....
T Consensus 185 mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 185 MPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred EEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 556788999999999999999999877643
No 32
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=93.02 E-value=3.8 Score=38.59 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=28.0
Q ss_pred CeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 436 GWLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 436 g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
.-+.+++.|+..++|-+++.+|+..+..+|+.
T Consensus 268 ~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~ 299 (306)
T PRK11857 268 KVMHLTVAADHRWIDGATIGRFASRVKELLEK 299 (306)
T ss_pred eeeEEeEecchhhhCcHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999998887764
No 33
>PF06974 DUF1298: Protein of unknown function (DUF1298); InterPro: IPR009721 This entry represents the C terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=92.93 E-value=3.8 Score=34.21 Aligned_cols=58 Identities=22% Similarity=0.123 Sum_probs=37.6
Q ss_pred cceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHh
Q 011748 407 QEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEG 468 (478)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~ 468 (478)
.+-+++.+.... ...+..+.+.+.+|+|++.+.+.-+.+... +.+++++.+...|+++
T Consensus 93 ~G~~v~~i~~~~--~~~~~~L~itv~SY~g~l~~gi~ad~~~vp--D~~~l~~~~~~~l~eL 150 (153)
T PF06974_consen 93 AGARVEYIYPSP--LGDGQALNITVFSYAGKLDFGIVADRDAVP--DPQRLADCFEEALEEL 150 (153)
T ss_pred CCeeeEEEEeee--ecCCcceEEEEEEeCCEEEEEEEEccccCC--CHHHHHHHHHHHHHHH
Confidence 344566554322 122345778888999999999999998874 3455556665555544
No 34
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=92.64 E-value=6.9 Score=38.58 Aligned_cols=172 Identities=9% Similarity=0.029 Sum_probs=89.2
Q ss_pred EEEecCHHHHHHHHHHHHh-------cCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceee
Q 011748 251 LRLQLNRDETGRLVEGCKS-------RGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGF 323 (478)
Q Consensus 251 ~~~~l~~~~~~~l~~~~r~-------~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~ 323 (478)
....++.+...++++..+. .++|++.+|.-|++.+|.++-.+.. .+ ++...... ....||.
T Consensus 206 ~~~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na----~~------~~~~i~~~--~~~nIgi 273 (407)
T PRK05704 206 TFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNA----SI------DGDDIVYH--NYYDIGI 273 (407)
T ss_pred EEEEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhc----EE------cCCeEEEc--CCCCeEE
Confidence 3456777777776665542 3699999999999999998542211 00 11000000 0122333
Q ss_pred eee-----eccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCcc
Q 011748 324 YHS-----AILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPI 398 (478)
Q Consensus 324 f~~-----~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 398 (478)
-+. .+|+.-. ....++.++++++++-..+.....-...+ +....|++ +|.
T Consensus 274 Av~~~~GLivPVI~~-a~~~sl~eIa~~~~~l~~~ar~g~L~~~d----------------------~~ggTfTi--SNl 328 (407)
T PRK05704 274 AVGTPRGLVVPVLRD-ADQLSFAEIEKKIAELAKKARDGKLSIEE----------------------LTGGTFTI--TNG 328 (407)
T ss_pred EEECCCceEeCcCCC-cccCCHHHHHHHHHHHHHHHHcCCCChHH----------------------cCCceEEE--ecC
Confidence 332 1343222 34568999999998777665443211110 11123344 454
Q ss_pred cccc---------cccccceEEeeEEEEeecccc-cCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 399 VDET---------NKLHQEIGLEDYIGCSSVHGV-GPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 399 ~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
|... +.+..-+.+..+.- ...+ +.. .....-+.+++.|+..++|-+++.+|+..+..+|+.
T Consensus 329 G~~G~~~~tpiIn~pq~aILgvG~i~~---~pv~~~g~-----i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~le~ 399 (407)
T PRK05704 329 GVFGSLMSTPIINPPQSAILGMHKIKE---RPVAVNGQ-----IVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLED 399 (407)
T ss_pred CcccccceeccccCCcEEEEEcccceE---EeEEECCE-----EEEEEEEEEEEEechhhhCcHHHHHHHHHHHHHhhC
Confidence 4310 00000011110000 0000 000 111245779999999999999999999998888764
No 35
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=92.62 E-value=4.3 Score=41.78 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=27.7
Q ss_pred CeeEEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 011748 436 GWLDCACVYPSPLHSREQLQQLIDDMKKILV 466 (478)
Q Consensus 436 g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~ 466 (478)
.-|.+++.|+..++|-+++.+|+..+..+|+
T Consensus 509 ~~m~ltls~DHRviDGa~aa~Fl~~~~~~le 539 (546)
T TIGR01348 509 LMLPLSLSYDHRVIDGADAARFTTYICESLA 539 (546)
T ss_pred EEEEEeEeccchhcChHHHHHHHHHHHHHHh
Confidence 4577999999999999999999999888776
No 36
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=92.18 E-value=0.51 Score=28.89 Aligned_cols=36 Identities=19% Similarity=0.054 Sum_probs=31.8
Q ss_pred EEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011748 251 LRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAA 286 (478)
Q Consensus 251 ~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l 286 (478)
+++.++.++.++|.+.|++.|.|.+.++--|+.-.+
T Consensus 2 iti~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l 37 (39)
T PF01402_consen 2 ITIRLPDELYERLDELAKELGRSRSELIREAIREYL 37 (39)
T ss_dssp EEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred eEEEeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 568899999999999999999999999988776544
No 37
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=92.15 E-value=6.9 Score=38.54 Aligned_cols=173 Identities=11% Similarity=0.096 Sum_probs=90.0
Q ss_pred EEEecCHHHHHHHHHHHHh-------cCCChHHHHHHHHHHHHhcccCCCCCC-------CCceEEEeecccCCcCCCCC
Q 011748 251 LRLQLNRDETGRLVEGCKS-------RGIKLCGALAAAGLIAARSTKYFPSHQ-------REKYAVVTLVDCRSILEPVL 316 (478)
Q Consensus 251 ~~~~l~~~~~~~l~~~~r~-------~~vT~~~~l~aa~~~~l~~~~~~~~~~-------~~~~~~~~~v~~R~~~~~~~ 316 (478)
....+|.....++++..+. .++|++.++.=|.+.+|.++-.+...- ...+-||+.++..+
T Consensus 217 ~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvAV~~~~------ 290 (418)
T PTZ00144 217 TFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPT------ 290 (418)
T ss_pred EEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEEEECCC------
Confidence 4456777666666665542 268999999999999999864221100 01223333333211
Q ss_pred CCCceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecC
Q 011748 317 SDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFED 396 (478)
Q Consensus 317 ~~~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~ 396 (478)
|.+ +|+.-. ....++.++++++++-........-...+ +....|++ +
T Consensus 291 -----GL~---vPVI~~-ad~~sl~eIa~ei~~L~~~ar~g~L~~~e----------------------~~GgTfTI--S 337 (418)
T PTZ00144 291 -----GLV---VPVIRN-CENKSFAEIEKELADLAEKARNNKLTLED----------------------MTGGTFTI--S 337 (418)
T ss_pred -----CEE---EccCCC-cccCCHHHHHHHHHHHHHHHHcCCCCHHH----------------------hCCceEEE--E
Confidence 222 343222 34568999999998777665543311110 11123334 4
Q ss_pred cccccccccccceEEeeEEE-----EeecccccCeEEEE--EEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 397 PIVDETNKLHQEIGLEDYIG-----CSSVHGVGPSIAIF--DTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
|.|... ......+-. ............+. ......-|.+++.||..++|-+++.+|+..+..+|+.
T Consensus 338 NlG~~G-----~~~~tpIInpPq~aILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRviDGa~AA~FL~~lk~~LE~ 410 (418)
T PTZ00144 338 NGGVFG-----SLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIED 410 (418)
T ss_pred CCCCCC-----cceeeeeecCCceEEEecccceeEeEEECCEEEEEeEEEEEEecchhhhChHHHHHHHHHHHHHhcC
Confidence 444210 000000000 00000000000000 0011245789999999999999999999999888764
No 38
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=90.90 E-value=11 Score=38.38 Aligned_cols=31 Identities=3% Similarity=0.041 Sum_probs=27.1
Q ss_pred CeeEEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 011748 436 GWLDCACVYPSPLHSREQLQQLIDDMKKILV 466 (478)
Q Consensus 436 g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~ 466 (478)
.-|.+++.|+..++|-+++.+|+..+...|+
T Consensus 502 ~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE 532 (539)
T PLN02744 502 SFMSVTLSCDHRVIDGAIGAEWLKAFKGYIE 532 (539)
T ss_pred eeeEEeEecchhhhCcHHHHHHHHHHHHHhc
Confidence 4578999999999999999999988887765
No 39
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=90.14 E-value=12 Score=36.94 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=27.9
Q ss_pred CeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 436 GWLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 436 g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
.-|.+++.|+..++|-+.+.+|+..+..+|+.
T Consensus 364 ~~m~lsLt~DHRviDGa~aa~Fl~~l~~~le~ 395 (403)
T TIGR01347 364 PMMYLALSYDHRLIDGKEAVTFLVTIKELLED 395 (403)
T ss_pred EEEEEEEEecchhhChHHHHHHHHHHHHHhcC
Confidence 35679999999999999999999998887764
No 40
>PHA01623 hypothetical protein
Probab=89.70 E-value=1.6 Score=29.31 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=36.7
Q ss_pred cceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 247 FSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 247 ~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
+...+.+.|+.++..+|..+|..+|++.+.++.-|+-..+..
T Consensus 12 k~~r~sVrldeel~~~Ld~y~~~~g~~rSe~IreAI~~yL~~ 53 (56)
T PHA01623 12 QKAVFGIYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_pred cceeEEEEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999988777754
No 41
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=88.51 E-value=9 Score=38.00 Aligned_cols=30 Identities=7% Similarity=0.231 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 438 LDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 438 l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
|.+++.|+..++|-..+.+|++.+...|+.
T Consensus 375 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 404 (411)
T PRK11856 375 MPLSLSFDHRVIDGADAARFLKALKELLEN 404 (411)
T ss_pred EEEeEEeehhhcCcHHHHHHHHHHHHHHhC
Confidence 889999999999999999999888877753
No 42
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=87.13 E-value=2.8 Score=27.37 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=35.0
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
..+.++|+.++..+|+..|+.+|-|+++-+..++.-++.+
T Consensus 5 ~~f~lRlP~~l~~~lk~~A~~~gRS~NsEIv~~L~~~l~~ 44 (50)
T PF03869_consen 5 PQFNLRLPEELKEKLKERAEENGRSMNSEIVQRLEEALKK 44 (50)
T ss_dssp EEEEEECEHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred CceeeECCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhc
Confidence 3457889999999999999999999999999999888875
No 43
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=86.99 E-value=1.6 Score=28.67 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=29.4
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHH
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAA 281 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa 281 (478)
..+.+++++++-+++...|++.|+|++.++.-+
T Consensus 18 g~~~lRi~~~Lh~~l~~~A~~~gvSlN~~I~~a 50 (51)
T PF05534_consen 18 GKFNLRIPPELHRALAEAAAAEGVSLNQWIEEA 50 (51)
T ss_pred CceeeeCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 456788999999999999999999999998754
No 44
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=84.77 E-value=4.8 Score=25.46 Aligned_cols=40 Identities=18% Similarity=0.080 Sum_probs=35.7
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 011748 250 VLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARST 289 (478)
Q Consensus 250 ~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~ 289 (478)
.+.+.++.++..+|..+|++.|++.+.++--|+-..+.+|
T Consensus 4 r~t~~l~~el~~~L~~ls~~t~i~~S~Ll~eAle~~l~ky 43 (44)
T PF12651_consen 4 RFTFSLDKELYEKLKELSEETGIPKSKLLREALEDYLEKY 43 (44)
T ss_pred EEEEecCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 4568899999999999999999999999999988887764
No 45
>PHA01513 mnt Mnt
Probab=83.62 E-value=4 Score=29.62 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=34.9
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 250 VLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 250 ~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
.+.++++.++-.+|...|+.+|.|++..+..++..++..
T Consensus 7 qf~LRLP~eLk~rL~~aA~~nGRSmNaeIv~~Le~al~~ 45 (82)
T PHA01513 7 QFNLRLPYELKEKLKQRAKANGRSLNAELVQIVQDALSK 45 (82)
T ss_pred ceeeeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 356899999999999999999999999999988887754
No 46
>PRK11675 LexA regulated protein; Provisional
Probab=82.64 E-value=5 Score=29.73 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=33.3
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAA 286 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l 286 (478)
..+.+.++.+..++|.++|+++++|.+.++--++...+
T Consensus 51 KRveVKldedl~ekL~eyAe~~nitRSElIr~~I~k~L 88 (90)
T PRK11675 51 KRVELKLNADLVDALNELAEARNISRSELIEEILMKQL 88 (90)
T ss_pred eeEEEEECHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 46789999999999999999999999999888776554
No 47
>PHA01748 hypothetical protein
Probab=80.97 E-value=7.1 Score=26.61 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=35.5
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
..+.++|+.++.+.|.++|+++|++-+.++..|+-..+..
T Consensus 3 ~~iSvrLp~el~~eld~~a~~~g~~RSE~Ir~Ai~~~~~~ 42 (60)
T PHA01748 3 KVITFKIEEDLLELLDRYAIKHGLNRSEAIRKAIEKMVKD 42 (60)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999998877654
No 48
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=78.73 E-value=84 Score=32.55 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=27.9
Q ss_pred CeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 436 GWLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 436 g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
..|.+++.|+..++|-..+.+|++.+...|+.
T Consensus 510 ~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 541 (547)
T PRK11855 510 LMLPLSLSYDHRVIDGATAARFTNYLKQLLAD 541 (547)
T ss_pred eEEEEeEEccchhcCcHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999988887753
No 49
>TIGR01720 NRPS-para261 non-ribosomal peptide synthase domain TIGR01720. This model is 171 amino acids long and contains three very highly conserved regions. At the N-terminus is a nearly invariant lysine (position 11) followed by xxxRxxPxxGxGYG in which the proline and the first glycine are invariant. This is followed approximately 22 residues later by the motif FNYLG. Near the C-terminus of the domain is the sequence TxSD where the serine and aspartate are nearly invariant.
Probab=76.35 E-value=10 Score=30.67 Aligned_cols=45 Identities=31% Similarity=0.412 Sum_probs=37.3
Q ss_pred EEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 011748 427 IAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSF 471 (478)
Q Consensus 427 ~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~ 471 (478)
+.+.....++++.+.+.|+...+++++++.+...+...|..++..
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~~~~l~~~~~~ 126 (153)
T TIGR01720 82 LEINAMIEDGELTLTWSYPTQLFSEDTIEQLADRFKEALEALIAH 126 (153)
T ss_pred EEEEEEEECCeEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444557889999999999999999999999999999887653
No 50
>PF09274 ParG: ParG; InterPro: IPR015354 This entry represents plasmid partition proteins; it adopts a ribbon-helix-helix fold, with a core of four alpha-helices. The proteins are an essential component of the DNA partition complex of the multi drug resistance plasmid TP228 []. ; PDB: 1P94_B.
Probab=72.38 E-value=14 Score=26.34 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=31.6
Q ss_pred CCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011748 245 PRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIA 285 (478)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~ 285 (478)
+.....+.+.|+++.-.+++.+|-..|.|+..++--++--.
T Consensus 31 s~k~Krvtv~i~EelH~r~K~~ca~~G~sisdvv~eLid~w 71 (76)
T PF09274_consen 31 SEKTKRVTVNIDEELHRRFKAACAKQGTSISDVVRELIDKW 71 (76)
T ss_dssp TTTEEEE-EEEEHHHHHHHHHHHHHHT--HHHHHHHHHHHH
T ss_pred ccceEEEEEecCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34567788999999999999999999999999987665433
No 51
>PHA00617 ribbon-helix-helix domain containing protein
Probab=71.29 E-value=20 Score=26.04 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=35.2
Q ss_pred ceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011748 248 SQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAAR 287 (478)
Q Consensus 248 ~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~ 287 (478)
...+.+.|++++.++|.++++..|.+-+.++..|+...+.
T Consensus 39 m~~iSVrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLe 78 (80)
T PHA00617 39 MDVISFKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLE 78 (80)
T ss_pred ceEEEEECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999888766654
No 52
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=69.73 E-value=1.6e+02 Score=31.27 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=28.4
Q ss_pred CeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 436 GWLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 436 g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
-.|.+++.|+..++|-+.+.+|+..+...|+.
T Consensus 596 ~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~ 627 (633)
T PRK11854 596 LMLPLSLSYDHRVIDGADGARFITIINDRLSD 627 (633)
T ss_pred EEEEEeEEccchhcchHHHHHHHHHHHHHHhC
Confidence 35779999999999999999999999888874
No 53
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=59.11 E-value=35 Score=25.00 Aligned_cols=39 Identities=10% Similarity=0.109 Sum_probs=30.4
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAAR 287 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~ 287 (478)
..+.+++|.++-.+..+.|++.|+|++.++-..+-....
T Consensus 2 a~i~~Rid~~lK~~a~~il~~~Glt~s~ai~~fl~qiv~ 40 (83)
T PF04221_consen 2 ATINVRIDEELKEEAEAILEELGLTLSDAINMFLKQIVR 40 (83)
T ss_dssp EEEEEEE-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred CeEEEEcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 357789999999999999999999999998876665554
No 54
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=55.33 E-value=15 Score=22.37 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHhCcccceeec
Q 011748 47 HPNIQLLQTALNNLQNNHPILRSKLH 72 (478)
Q Consensus 47 ~ld~~~L~~A~~~li~rhp~Lr~~~~ 72 (478)
.+|.+.|+.-+..++++||-+...+.
T Consensus 9 ~Ld~~qL~~lL~~l~~~HPei~~~i~ 34 (38)
T PF14483_consen 9 TLDKDQLQSLLQSLCERHPEIQQEIR 34 (38)
T ss_dssp TS-HHHHHHHHHHHHHHSTHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHhChhHHHHHH
Confidence 58999999999999999998875553
No 55
>PRK13877 conjugal transfer relaxosome component TraJ; Provisional
Probab=54.33 E-value=37 Score=26.65 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.2
Q ss_pred cceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011748 247 FSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAG 282 (478)
Q Consensus 247 ~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~ 282 (478)
++..+.+.+++++...|.+.|++.|+|++.++-.+.
T Consensus 9 R~~~I~vrvt~eE~~~I~~kA~~AGlS~SeYLR~~a 44 (114)
T PRK13877 9 RGRHLRVPVLPDEKAEIEANAAAAGLSVARYLRDVG 44 (114)
T ss_pred cCceeEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445678999999999999999999999999887753
No 56
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=53.29 E-value=45 Score=24.49 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=31.9
Q ss_pred EEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011748 251 LRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAAR 287 (478)
Q Consensus 251 ~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~ 287 (478)
+.++++.++-++..+.|++.|+|++.++-..+.....
T Consensus 5 i~~Rvd~~lK~~a~~i~~~lGl~~s~ai~~fl~qvv~ 41 (83)
T TIGR02384 5 ISIRIDEELKKEAYAVFEELGLTPSTAIRMFLKQVIR 41 (83)
T ss_pred eEEeeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998776655443
No 57
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=52.58 E-value=55 Score=23.82 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=32.2
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011748 250 VLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAAR 287 (478)
Q Consensus 250 ~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~ 287 (478)
.+.+++|.+.-+...+.|++.|+|++.++-..+.....
T Consensus 3 ~i~vRiD~~lK~~A~~vl~~lGls~S~Ai~~fl~qi~~ 40 (80)
T PRK11235 3 TINVRVDDELKARAYAVLEKLGVTPSEALRLLLQYVAE 40 (80)
T ss_pred eEEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999998776655544
No 58
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=51.27 E-value=3.9e+02 Score=29.82 Aligned_cols=31 Identities=6% Similarity=0.239 Sum_probs=28.4
Q ss_pred CeeEEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 011748 436 GWLDCACVYPSPLHSREQLQQLIDDMKKILV 466 (478)
Q Consensus 436 g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~ 466 (478)
--|.+++.|+..+++-++..+|+..+..+|+
T Consensus 319 kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe 349 (1228)
T PRK12270 319 KVMTLTSTYDHRIIQGAESGEFLRTIHQLLL 349 (1228)
T ss_pred eeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence 3578999999999999999999999999887
No 59
>PF08681 DUF1778: Protein of unknown function (DUF1778); InterPro: IPR014795 This entry is represented by Vibrio phage ICP1, Orf50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA. ; PDB: 1Y9B_A.
Probab=48.46 E-value=54 Score=23.83 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=28.9
Q ss_pred EEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 251 LRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 251 ~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
+.++++++.-..|.+++...|.|++.++..+..-...+
T Consensus 2 i~iR~~~e~k~li~~AA~~~G~sls~Fi~~aa~~~A~~ 39 (80)
T PF08681_consen 2 IEIRVTPEEKELIERAAALSGVSLSDFILSAALEAAEE 39 (80)
T ss_dssp EEEE--HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred eeEecCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999998876655443
No 60
>PF10723 RepB-RCR_reg: Replication regulatory protein RepB; InterPro: IPR019661 This family of proteins regulates the replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of the replication of the RCR plasmids occurs mainly at the initiation of leading strand synthesis at the dso, such that concentration of Rep protein controls plasmid replication []. ; PDB: 2KEL_B.
Probab=44.40 E-value=70 Score=23.55 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=29.4
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAAR 287 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~ 287 (478)
..+...|+.+.-..|..+|+..|+|...++--++-..+.
T Consensus 42 k~i~v~I~~~~K~~L~~lc~~~GlTQae~IE~LI~~~~~ 80 (84)
T PF10723_consen 42 KRINVFIPNELKERLEELCKEQGLTQAEMIERLIKSELQ 80 (84)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHS---HHHHHHHHHHHHHH
T ss_pred CeeEEEECHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 356788999999999999999999999988776554443
No 61
>PRK13858 type IV secretion system T-DNA border endonuclease VirD1; Provisional
Probab=43.80 E-value=60 Score=26.66 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=32.0
Q ss_pred ceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011748 248 SQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAG 282 (478)
Q Consensus 248 ~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~ 282 (478)
...+.+.+++++...|.+.|+..|+|+..++-.|.
T Consensus 24 ~kvVsvRLTe~Ey~~L~~rA~~aGlS~SEfIRqAi 58 (147)
T PRK13858 24 FKVVSTRLRSAEYESFSAQARLLGLSDSMAIRVAV 58 (147)
T ss_pred CeEEEEecCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 36788999999999999999999999999998865
No 62
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=43.52 E-value=3.5e+02 Score=27.01 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=27.6
Q ss_pred cCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 011748 435 DGWLDCACVYPSPLHSREQLQQLIDDMKKILV 466 (478)
Q Consensus 435 ~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~ 466 (478)
...|.++++.+...++.+...+|+++|...++
T Consensus 432 ~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~E 463 (470)
T KOG0557|consen 432 INAMTVTLSADHRVVDGAVAARFLDEFKENLE 463 (470)
T ss_pred eeeeEEEEecCcceecHHHHHHHHHHHHHHhh
Confidence 36799999999999999999999998887664
No 63
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=43.35 E-value=20 Score=35.52 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=27.0
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
.-|.+++||-++||.-+..|+++|.+....
T Consensus 375 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 404 (411)
T PRK11856 375 MPLSLSFDHRVIDGADAARFLKALKELLEN 404 (411)
T ss_pred EEEeEEeehhhcCcHHHHHHHHHHHHHHhC
Confidence 568999999999999999999999888754
No 64
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=41.16 E-value=1.2e+02 Score=23.43 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=32.3
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAA 286 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l 286 (478)
....+++++++-+++.-.|.+.|+|++.++.-++-.++
T Consensus 71 Gkf~~Ri~p~lH~~a~~aAa~qgiSLN~~v~~~L~~~v 108 (111)
T COG4226 71 GKFNLRIDPELHEAAALAAAAQGISLNTWVEEALNEAV 108 (111)
T ss_pred ceeeEecCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34578999999999999999999999999887765544
No 65
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=40.52 E-value=53 Score=20.11 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=19.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHH
Q 011748 263 LVEGCKSRGIKLCGALAAAGLIA 285 (478)
Q Consensus 263 l~~~~r~~~vT~~~~l~aa~~~~ 285 (478)
|.+.||.+|+.++..|.-++...
T Consensus 2 lieTcK~ngv~P~~yL~~vL~~i 24 (39)
T PF13817_consen 2 LIETCKLNGVNPYAYLTDVLERI 24 (39)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Confidence 67899999999999988876443
No 66
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=36.08 E-value=30 Score=35.82 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=26.8
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
..|.+++||-++||.-+..|+++|.+.+..
T Consensus 512 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 541 (547)
T PRK11855 512 LPLSLSYDHRVIDGATAARFTNYLKQLLAD 541 (547)
T ss_pred EEEeEEccchhcCcHHHHHHHHHHHHHHhC
Confidence 458999999999999999999999988754
No 67
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=34.74 E-value=84 Score=21.99 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=25.7
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHH
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAA 281 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa 281 (478)
....+.|.+..+..|.+.|++.|.|+..++.-.
T Consensus 12 hrTSi~LE~~FW~~L~eiA~~~g~s~~~li~~i 44 (67)
T PF13467_consen 12 HRTSIRLEPAFWDALEEIAAREGLSLNALIAEI 44 (67)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred EEeeeeehHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 345689999999999999999999997776543
No 68
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=33.82 E-value=63 Score=23.05 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=29.5
Q ss_pred EEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCC
Q 011748 38 TVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSA 75 (478)
Q Consensus 38 ~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~ 75 (478)
..+++.-...-|.+.|..|+.++...-|.|+..+-.+.
T Consensus 6 ~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et 43 (75)
T PF14492_consen 6 LSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEET 43 (75)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTT
T ss_pred EEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchh
Confidence 34556666677899999999999999999998775443
No 69
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=30.90 E-value=82 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=25.6
Q ss_pred EEEEEEEecCCCHHHHHHHHHHHHHhCcccceeec
Q 011748 38 TVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLH 72 (478)
Q Consensus 38 ~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~ 72 (478)
..++++.++++|.++|.+.+.. .-..+||+.=.
T Consensus 2 ~s~~~~~~~p~~~~~l~~~l~~--~~~~vlR~KG~ 34 (94)
T PF07683_consen 2 SSVTFEFDRPFDPERLEAWLQE--LPGDVLRAKGI 34 (94)
T ss_dssp EEEEEEESS-B-HHHHHHHHHH--TTTTEEEEEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHh--CCCCEEEEEEE
Confidence 3578889999999999999999 77778997653
No 70
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=29.78 E-value=1.5e+02 Score=19.89 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCC
Q 011748 440 CACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGE 475 (478)
Q Consensus 440 l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~ 475 (478)
+++....+. ++++-+++.+.+...+.+.+..|...
T Consensus 4 i~i~~~~Gr-s~EqK~~L~~~it~a~~~~~~~p~~~ 38 (60)
T PRK02289 4 VRIDLFEGR-SQEQKNALAREVTEVVSRIAKAPKEA 38 (60)
T ss_pred EEEEECCCC-CHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 456666665 89999999999999999999987654
No 71
>PF09498 DUF2388: Protein of unknown function (DUF2388); InterPro: IPR012661 This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae pv. tomato str. DC3000, and single members in several other Proteobacteria. The function is unknown.
Probab=24.23 E-value=80 Score=22.33 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.2
Q ss_pred ecCCCHHHHHHHHHHHHHhCcccce
Q 011748 45 SKHPNIQLLQTALNNLQNNHPILRS 69 (478)
Q Consensus 45 ~g~ld~~~L~~A~~~li~rhp~Lr~ 69 (478)
.|.+--..|+.|++.+.+++|-+++
T Consensus 36 dG~IRGA~LEaAl~~lR~~~p~~~a 60 (72)
T PF09498_consen 36 DGAIRGARLEAALRQLRQDNPELQA 60 (72)
T ss_pred CccchHHHHHHHHHHHHhhCCCCCC
Confidence 5778889999999999999999864
No 72
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=21.48 E-value=1.1e+02 Score=27.56 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=27.2
Q ss_pred ceEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 154 QWVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 154 ~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
...+.++++|=++||.-+..|+++|.+....
T Consensus 195 ~~~lslt~DHRvidG~~aa~Fl~~l~~~le~ 225 (231)
T PF00198_consen 195 VMNLSLTFDHRVIDGAEAARFLKDLKELLEN 225 (231)
T ss_dssp EEEEEEEEETTTS-HHHHHHHHHHHHHHHHS
T ss_pred EEEeEEeccceEEcHHHHHHHHHHHHHHHhC
Confidence 4788999999999999999999999988764
No 73
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=20.94 E-value=82 Score=33.31 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=26.7
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
..|.+++||-++||.-+..|+++|.+.+..
T Consensus 598 m~lslt~DHRviDGa~aa~Fl~~lk~~LE~ 627 (633)
T PRK11854 598 LPLSLSYDHRVIDGADGARFITIINDRLSD 627 (633)
T ss_pred EEEeEEccchhcchHHHHHHHHHHHHHHhC
Confidence 348899999999999999999999988754
No 74
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.16 E-value=69 Score=18.94 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCChHH
Q 011748 259 ETGRLVEGCKSRGIKLCG 276 (478)
Q Consensus 259 ~~~~l~~~~r~~~vT~~~ 276 (478)
.+..|++.|+++|++..+
T Consensus 5 ~v~eLk~~l~~~gL~~~G 22 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSG 22 (35)
T ss_dssp HHHHHHHHHHHTTS-STS
T ss_pred cHHHHHHHHHHCCCCCCC
Confidence 467899999999987654
Done!