Query 011748
Match_columns 478
No_of_seqs 148 out of 1339
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 14:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l5a_A Amide synthase, VIBH; n 100.0 1.4E-41 4.8E-46 339.1 29.0 384 35-477 20-416 (436)
2 2jgp_A Tyrocidine synthetase 3 100.0 3.7E-41 1.3E-45 343.5 31.6 405 17-478 96-516 (520)
3 4hvm_A Tlmii; PSI-biology, mid 100.0 1.1E-39 3.7E-44 330.4 30.0 409 17-478 13-467 (493)
4 2vsq_A Surfactin synthetase su 100.0 1.2E-38 4E-43 356.3 33.1 411 18-478 13-438 (1304)
5 2xhg_A Tyrocidine synthetase A 100.0 6.7E-37 2.3E-41 307.9 30.4 410 17-473 17-458 (466)
6 1q9j_A PAPA5, polyketide synth 100.0 9E-36 3.1E-40 295.8 34.5 396 13-474 3-419 (422)
7 3fot_A 15-O-acetyltransferase; 99.9 1.5E-24 5.1E-29 216.0 33.2 433 11-469 22-518 (519)
8 4g22_A Hydroxycinnamoyl-COA sh 99.2 2.6E-09 9E-14 105.4 21.3 273 48-354 56-339 (439)
9 2bgh_A Vinorine synthase; VS, 99.1 5.3E-09 1.8E-13 102.6 21.3 257 49-354 59-324 (421)
10 2xr7_A Malonyltransferase; xen 99.0 2.6E-08 9.1E-13 98.7 19.9 269 50-353 57-354 (453)
11 2e1v_A Acyl transferase; BAHD 98.9 1.1E-07 3.9E-12 94.1 21.7 279 50-354 62-353 (454)
12 2rkv_A Trichothecene 3-O-acety 98.7 9.2E-07 3.1E-11 87.6 19.2 197 139-353 133-340 (451)
13 3mae_A 2-oxoisovalerate dehydr 92.5 2.7 9.3E-05 37.2 13.5 31 437-467 209-239 (256)
14 2k9i_A Plasmid PRN1, complete 92.2 0.48 1.6E-05 30.6 6.4 41 248-288 9-49 (55)
15 1scz_A E2, dihydrolipoamide su 92.0 5.8 0.0002 34.6 16.6 172 250-467 31-225 (233)
16 3b8k_A PDCE2;, dihydrolipoylly 92.0 5.4 0.00018 34.9 14.8 91 251-356 40-142 (239)
17 3qoq_A Alginate and motility r 91.0 0.7 2.4E-05 31.4 6.0 41 248-288 19-59 (69)
18 2ba3_A NIKA; dimer, bacterial 90.7 0.87 3E-05 28.9 6.2 37 246-282 13-49 (51)
19 1dpb_A Dihydrolipoyl-transacet 90.5 8.1 0.00028 33.8 14.4 31 437-467 207-237 (243)
20 3rqc_A Probable lipoamide acyl 90.2 8.4 0.00029 33.3 14.7 169 250-466 33-215 (224)
21 1baz_A ARC repressor; transcri 90.1 1 3.5E-05 28.9 6.1 39 250-288 9-47 (53)
22 2ii3_A Lipoamide acyltransfera 88.6 5.5 0.00019 35.4 11.8 31 437-467 223-253 (262)
23 1q23_A Chloramphenicol acetylt 88.0 12 0.00041 32.1 14.6 31 437-467 184-214 (219)
24 2cpg_A REPA protein, transcrip 88.0 1.3 4.3E-05 27.1 5.3 39 250-288 4-42 (45)
25 3cla_A Type III chloramphenico 87.9 9.1 0.00031 32.7 12.5 31 437-467 180-210 (213)
26 3l60_A Branched-chain alpha-ke 87.8 14 0.00047 32.5 14.1 31 437-467 204-234 (250)
27 1p94_A Plasmid partition prote 86.0 1.2 4.1E-05 31.1 4.7 42 247-288 33-74 (76)
28 2kel_A SVTR protein, uncharact 85.8 2.3 8E-05 27.6 5.7 41 248-288 13-53 (56)
29 2gpe_A Bifunctional protein PU 85.1 2.3 8E-05 26.9 5.6 40 249-288 4-43 (52)
30 2ay0_A Bifunctional PUTA prote 82.6 4.3 0.00015 26.5 6.0 40 249-288 4-43 (58)
31 1nla_A Transcriptional repress 81.2 1.7 5.9E-05 29.0 3.7 38 252-289 11-48 (64)
32 1u9p_A PARC; unknown function; 79.7 4.7 0.00016 30.6 6.0 40 249-288 19-58 (120)
33 1mnt_A MNT repressor; transcri 74.5 4.6 0.00016 28.1 4.4 38 251-288 7-44 (76)
34 2i9d_A Chloramphenicol acetylt 74.2 41 0.0014 28.7 11.7 29 437-465 188-216 (217)
35 2an7_A Protein PARD; bacterial 72.2 6.4 0.00022 27.2 4.5 33 249-281 2-34 (83)
36 2k5j_A Uncharacterized protein 71.6 9 0.00031 26.9 5.5 40 249-288 10-49 (80)
37 1q23_A Chloramphenicol acetylt 68.9 3 0.0001 36.0 3.1 30 155-184 185-214 (219)
38 3cla_A Type III chloramphenico 68.2 3.5 0.00012 35.4 3.3 30 155-184 181-210 (213)
39 2i9d_A Chloramphenicol acetylt 65.2 4.1 0.00014 35.0 3.2 28 155-182 189-216 (217)
40 3rqc_A Probable lipoamide acyl 61.0 6.3 0.00021 34.1 3.6 30 155-184 187-216 (224)
41 2bsq_E FITA, trafficking prote 60.8 18 0.00062 25.1 5.1 36 253-288 6-41 (77)
42 3b8k_A PDCE2;, dihydrolipoylly 60.2 5.7 0.00019 34.8 3.2 30 155-184 204-233 (239)
43 1scz_A E2, dihydrolipoamide su 59.2 6.3 0.00022 34.3 3.3 30 155-184 196-225 (233)
44 1dpb_A Dihydrolipoyl-transacet 59.1 6.2 0.00021 34.6 3.2 30 155-184 208-237 (243)
45 2ii3_A Lipoamide acyltransfera 55.9 7.7 0.00026 34.4 3.3 30 155-184 224-253 (262)
46 2xt6_A 2-oxoglutarate decarbox 51.2 1.5E+02 0.005 32.4 12.8 32 436-467 190-221 (1113)
47 3h87_C Putative uncharacterize 48.7 29 0.001 23.7 4.5 34 253-286 7-40 (73)
48 3mae_A 2-oxoisovalerate dehydr 47.2 13 0.00044 32.8 3.3 31 155-185 210-240 (256)
49 3l60_A Branched-chain alpha-ke 44.9 13 0.00045 32.7 2.9 30 155-184 205-234 (250)
50 4fxe_A Antitoxin RELB; toxin/a 39.5 77 0.0026 22.0 5.6 38 250-287 3-40 (79)
51 1y9b_A Conserved hypothetical 39.3 59 0.002 23.2 5.2 40 248-287 5-45 (90)
52 4hv0_A AVTR; ribbon-helix-heli 37.1 31 0.0011 25.0 3.2 35 253-287 3-37 (106)
53 4h62_V Mediator of RNA polymer 34.3 47 0.0016 17.3 2.8 20 447-466 7-26 (31)
54 3dva_I Dihydrolipoyllysine-res 27.6 13 0.00044 35.7 0.0 30 155-184 391-420 (428)
55 2hza_A Nickel-responsive regul 25.9 1.5E+02 0.0052 22.8 6.0 40 250-289 3-43 (133)
56 2wvf_A Hpnikr, putative nickel 21.0 1.6E+02 0.0056 23.1 5.3 41 248-288 10-51 (148)
No 1
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=100.00 E-value=1.4e-41 Score=339.06 Aligned_cols=384 Identities=14% Similarity=0.073 Sum_probs=269.7
Q ss_pred CceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEeecccCCccccccCCCCCCchH
Q 011748 35 TGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPF 114 (478)
Q Consensus 35 ~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (478)
.++....++++|.+|.++|++||..+++|||+||++|...++ ++.......+.+.++ ...+.....+
T Consensus 20 ~y~~~~~~~l~g~ld~~~L~~A~~~lv~rh~~LRt~f~~~~~----~v~~~~~~~~~~~d~---------~~~~~~~~~~ 86 (436)
T 1l5a_A 20 LDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGE----LYWHPFSPPIDYQDL---------SIHLEAEPLA 86 (436)
T ss_dssp CSEEEEEEEEESSCCHHHHHHHHHHHHHTCGGGGEEECTTCC----EEECSSCCCCEEEEC---------TTCTTHHHHH
T ss_pred ccceeEEEEEeCCCCHHHHHHHHHHHHHHhheeEEEEEecCC----eECCCcCCCccEEeC---------CCCCCHHHHH
Confidence 366778899999999999999999999999999999987654 333333335555554 1111112234
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCcccc
Q 011748 115 QLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEY 194 (478)
Q Consensus 115 ~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~ 194 (478)
.+.+.+.... +|++ .++|++|+.+++.+++++.|++.+||+++||||+.+|+++|.++|.+...+.. +
T Consensus 87 ~~~~~~~~~~-----~fdl----~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~~~~~g~~---~ 154 (436)
T 1l5a_A 87 WRQIEQDLQR-----SSTL----IDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQT---P 154 (436)
T ss_dssp HHHHHHHHTS-----CCCC----BTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHTCC---C
T ss_pred HHHHHHHhcC-----CCCc----CCCCCeEEEEEEEcCCEEEEEEeehhheecHhHHHHHHHHHHHHHHHHhcCCC---C
Confidence 4445555443 4444 78999999999988899999999999999999999999999999986544432 1
Q ss_pred ccCCCCCcchhhccC------CC---CCCchhhhcchhhhhcccccCcccCCCCCCCCCCCcceEEEEecCHHHHHHHHH
Q 011748 195 DRKGEVSLGIEEFIP------SG---KANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVE 265 (478)
Q Consensus 195 ~~~~~~~~~~~~~~~------~~---~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~ 265 (478)
+ . +..++.+++. .. ...+.||++.+... .+...+|..............+.++.+.+++|++
T Consensus 155 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~------~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~ 225 (436)
T 1l5a_A 155 T--A-AFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREA------PDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLK 225 (436)
T ss_dssp C--C-CCCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTS------CCCCBCCTTCCGGGCCEEEEEEECCHHHHHHHHH
T ss_pred C--C-CccCHHHHHHHHHHhhccHhHHHHHHHHHHHhcCC------CCcccCCCCCCCCcccceeeEEecCHHHHHHHHH
Confidence 1 1 2223433321 11 12567998887421 1112334322222233456778999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCCCchhHHHHHH
Q 011748 266 GCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELAT 345 (478)
Q Consensus 266 ~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~~~~~f~~l~~ 345 (478)
+|+++|+|++.+++|||+.++++++ + +++++|+|+++|.... . ++++|+|+|++|+++++++..+|.++++
T Consensus 226 ~a~~~~~t~~~~l~aa~~~~L~~~~--g----~dv~ig~~~~~R~~~~--~-~~~vG~f~n~lplr~~~~~~~t~~~~l~ 296 (436)
T 1l5a_A 226 LANANQIGWPDALVALCALYLESAE--P----DAPWLWLPFMNRWGSV--A-ANVPGLMVNSLPLLRLSAQQTSLGNYLK 296 (436)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHS--T----TCCEEEEEECCCTTSG--G-GGSCSCCCEEEEEECCCCTTCBHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhh--C----CceEEeeecccCCChH--H-hcCcceEEEEEEEEEecCCCCCHHHHHH
Confidence 9999999999999999999999987 3 4899999999998632 2 6799999999999999999999999999
Q ss_pred HHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCcccccccccccceEEeeEEEEeecccccC
Q 011748 346 RSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGP 425 (478)
Q Consensus 346 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (478)
++++++.+.++|+... +..+........+. ....+.+++. . +. ... ..+.+.++........ ..
T Consensus 297 ~v~~~~~~~~~h~~~~-----~~~i~~~l~~~~~~---~~lf~~~~~~-~-~~--~~~-~~~~~~~~~~~~~~~~--~~- 360 (436)
T 1l5a_A 297 QSGQAIRSLYLHGRYR-----IEQIEQDQGLNAEQ---SYFMSPFINI-L-PF--ESP-HFADCQTELKVLASGS--AE- 360 (436)
T ss_dssp HHHHHHHHHHHTTTSC-----HHHHHHHTTCCTTC---CBCCCSEEEE-E-CC--CCC-CCTTCEEEEEEEEECC--CC-
T ss_pred HHHHHHHHHhhhcCCC-----HHHHHHHhcccccC---CCccceEEEe-e-cc--Ccc-ccCCCeeEEEecCCCC--cc-
Confidence 9999999999988642 22222222111111 1122233322 1 11 111 2334444443322111 11
Q ss_pred eEEEEEE-EecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccC---CCCCCC
Q 011748 426 SIAIFDT-IRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSF---GDGETG 477 (478)
Q Consensus 426 ~~~~~~~-~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~---~~~~~~ 477 (478)
.+.+.+. ..+|++.+.+.|+.++|++++|++++++|..+|++++.+ |+.+++
T Consensus 361 ~l~l~v~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~ 416 (436)
T 1l5a_A 361 GINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVA 416 (436)
T ss_dssp SEEEEEEECTTSCEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHH
T ss_pred ceEEEEEecCCCcEEEEEEeChhhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHH
Confidence 5566555 356899999999999999999999999999999999999 998875
No 2
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=100.00 E-value=3.7e-41 Score=343.49 Aligned_cols=405 Identities=15% Similarity=0.132 Sum_probs=279.9
Q ss_pred ccCCCcccc-eeeeec-cC--CCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceE
Q 011748 17 ARPVGGTEY-SWCKAV-PT--GTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQI 92 (478)
Q Consensus 17 ~R~l~~~e~-~~~~~~-~~--~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~ 92 (478)
..|+++..+ .|+... .. ..++....++++|.+|.++|++||..+++|||+||++|...++++.+++.......+.+
T Consensus 96 ~~pls~~Q~~~~~~~~~~~~~~~y~~~~~~~l~g~ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~v~~~~~~~~~~ 175 (520)
T 2jgp_A 96 YYPVSSAQKRMYILDQFEGVGISYNMPSTMLIEGKLERTRVEAAFQRLIARHESLRTSFAVVNGEPVQNIHEDVPFALAY 175 (520)
T ss_dssp SEECCHHHHHHHHHHHHTCCTTTTBCCEEEEEEECCCHHHHHHHHHHHHHHCGGGGEEEEEETTEEEEEECSCCCCCCEE
T ss_pred CCCCCHHHHHHHHHHhcCCCCCcccceEEEEECCCCCHHHHHHHHHHHHHHhHhheeEEEeeCCEEEEEECCCCCCceEE
Confidence 357887754 465332 22 23566788999999999999999999999999999999877666666655433234444
Q ss_pred eecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHH
Q 011748 93 QHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAA 172 (478)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~ 172 (478)
.++ ...++.+ +.++ ...+|++ ..+|++|+.+++.+++++.+++.+||+++||||+.
T Consensus 176 ~~~--------------~~~~~~~-~~~~-----~~~~fdl----~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~ 231 (520)
T 2jgp_A 176 SEV--------------TEEEARE-LVSS-----LVQPFDL----EVAPLIRVSLLKIGEDRYVLFTDMHHSISDGVSSG 231 (520)
T ss_dssp EEC--------------CHHHHHH-HHHH-----TCCCCCT----TSSCCEEEEEEEEETTEEEEEEEEBGGGCCHHHHH
T ss_pred EeC--------------CHHHHHH-HHHH-----hcCCCCC----CCCcceeEEEEEEcCCcEEEEEEccceeecHhHHH
Confidence 443 1122222 3333 3445665 78999999999988889999999999999999999
Q ss_pred HHHHHHHHHhcCccCCCCccccccCCCCCcchhhcc------CCC---CCCchhhhcchhhhhcccccCcccCCCCCCC-
Q 011748 173 AVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFI------PSG---KANKPFWARGVDMLGYSLNSLRLSNISFVDA- 242 (478)
Q Consensus 173 ~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~- 242 (478)
+|+++|.++|.+.... ....++.++. ... ...+.||++.+.. ..+...+|...+
T Consensus 232 ~l~~el~~~Y~~~~l~----------~~~~~~~d~~~~~~~~~~~~~~~~~~~yW~~~l~~------~~~~~~lp~~~~~ 295 (520)
T 2jgp_A 232 ILLAEWVQLYQGDVLP----------ELRIQYKDFAVWQQEFSQSAAFHKQEAYWLQTFAD------DIPVLNLPTDFTR 295 (520)
T ss_dssp HHHHHHHHHHTTCCCC----------CCSCCHHHHHHHHHHHTTSHHHHHHHHHHHHHTSS------CCCCCCCCCSSCC
T ss_pred HHHHHHHHHHccCCCC----------CCCCCHHHHHHHHHHhhcChhhHHHHHHHHHHhCC------CCCcCCCCCCCCC
Confidence 9999999999864111 0111222221 111 1246789887731 112223443321
Q ss_pred -C-CCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCc
Q 011748 243 -D-SPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDY 320 (478)
Q Consensus 243 -~-~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~ 320 (478)
. .........+.++.+.+++|+++|+++|+|++.+++|||+.++++++ + ++++++|+|+++|.... . +++
T Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~l~~~a~~~~~T~~~~l~aa~a~~L~~~~--~---~~dv~~g~~~~gR~~~~--~-~~~ 367 (520)
T 2jgp_A 296 PSTQSFAGDQCTIGAGKALTEGLHQLAQATGTTLYMVLLAAYNVLLAKYA--G---QEDIIVGTPITGRSHAD--L-EPI 367 (520)
T ss_dssp CSSCCCBEEEEEEECCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH--T---CSCEEEEEEECCCCSGG--G-TTC
T ss_pred CCCCCCCccEEEEeCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C---CCCeEEEeccCCCCchh--h-hcc
Confidence 1 12344567789999999999999999999999999999999999988 5 67999999999998632 2 679
Q ss_pred eeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCcccc
Q 011748 321 LGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVD 400 (478)
Q Consensus 321 vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 400 (478)
+|+|+|++|+++++++..+|.++++++++++.+.++|+... +..+........... ..++.+.+++. . +...
T Consensus 368 vG~f~n~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p-----~~~i~~~l~~~r~~~-~~~lf~~~~~~-~-~~~~ 439 (520)
T 2jgp_A 368 VGMFVNTLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYP-----FEELVEKLAIARDLS-RNPLFDTVFTF-Q-NSTE 439 (520)
T ss_dssp CSCCCEEEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSC-----HHHHHHHTCCCCCTT-SCSSCSEEEEE-E-CCCC
T ss_pred EEeeeeeeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCC-----HHHHHHHhcCCCCCC-CCCcEEEEEEE-e-cCCC
Confidence 99999999999999999999999999999999999998642 222222221111110 11222222321 1 1110
Q ss_pred cccccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 011748 401 ETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETGE 478 (478)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~ 478 (478)
.....+.+.+...............+.+.+...+|++.+.+.|+..+|++++|++++++|..+|++++.+|+.++++
T Consensus 440 -~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~~ 516 (520)
T 2jgp_A 440 -EVMTLPECTLAPFMTDETGQHAKFDLTFSATEEREEMTIGVEYSTSLFTRETMERFSRHFLTIAASIVQNPHIRLGE 516 (520)
T ss_dssp -SCCCCSSEEEEECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHCTTCBGGG
T ss_pred -ccccCCCceeEEeecCCCCcceeeeeEEEEEECCCeEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCccCchhh
Confidence 11122334333321111100122345666666678999999999999999999999999999999999999998874
No 3
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=100.00 E-value=1.1e-39 Score=330.40 Aligned_cols=409 Identities=13% Similarity=0.094 Sum_probs=255.9
Q ss_pred ccCCCcccce-eeeecc-CCC-ceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEe
Q 011748 17 ARPVGGTEYS-WCKAVP-TGT-GITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQ 93 (478)
Q Consensus 17 ~R~l~~~e~~-~~~~~~-~~~-~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (478)
..||++.++. |+.... .+. ++..+.++++|.+|.++|++||..+++|||+||++|...++.+. ++.... ..+.+.
T Consensus 13 ~~Pls~~Q~~~~~~~~~~~~~~y~~~~~~~l~g~ld~~~L~~A~~~lv~rh~~LRt~f~~~~~~~~-~v~~~~-~~~~~~ 90 (493)
T 4hvm_A 13 LRRASFLQRGAWRWLREAPPAAAFAARGLLGSGRIDDDRLAAAADEVLDAFPLLRVNFVDDDGLWM-RTRENA-DALVRS 90 (493)
T ss_dssp EEECCHHHHHHHHHHTTSCGGGGEEEEEEEEESSCCHHHHHHHHHHHHHHCGGGGEEEEESSSEEE-EECSCC-CCEEEE
T ss_pred CCCCCHHHHHHHHHHhhCCCCcceeEEEEEEeCCCCHHHHHHHHHHHHHhchhceeEEEccCCEEE-EecCCC-CCceEE
Confidence 4688888554 653332 222 66778899999999999999999999999999999998776655 444433 455555
Q ss_pred ecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHH
Q 011748 94 HFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAA 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~ 173 (478)
++ ...+.....+.+.+.+..+. +|++ .++|+||+.+++.+++++.|++++||+++||||+.+
T Consensus 91 d~---------~~~~~~~~~~~~~~~~~~~~-----~fdl----~~~pl~r~~l~~~~~~~~~l~l~~HH~i~Dg~S~~~ 152 (493)
T 4hvm_A 91 DL---------RGHPDPQARCVELLRADRDR-----PTDP----ERDPLVRLHLVRLSETDVVLGVVAHQMLLDARSRYM 152 (493)
T ss_dssp EC---------TTSSSHHHHHHHHHHHHHSS-----CCCT----TTSCSEEEEEEECSSSEEEEEEEEETTTCCHHHHHH
T ss_pred EC---------CCCCchHHHHHHHHHHHhcC-----CCCC----CCCCeEEEEEEEECCCcEEEEEecchhhccHHHHHH
Confidence 54 11111114455555555443 4455 789999999999888899999999999999999999
Q ss_pred HHHHHHHHhcCccCCCCccccccCCCCCcchhhc--cCC---CCCCchhhhcchhhhhcccccCcccCCCCCCCCCCCcc
Q 011748 174 VSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEF--IPS---GKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFS 248 (478)
Q Consensus 174 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~~~~~~ 248 (478)
|+++|.++|.+ .. ++..+.....+... ... ....+.||++.+... ++ + ...+......
T Consensus 153 l~~~l~~~Y~g----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~-------~~--l-~~~~~~~~~~ 215 (493)
T 4hvm_A 153 VLGAVWQAYYG----RF---RPAQYRDFAEVADFHPLDRETVRVARHRWWSRRLPAL-------PV--R-GGDGGPVGPP 215 (493)
T ss_dssp HHHHHHHHHTT----CC---CGGGSBCGGGTTTCCTTCSHHHHHHHHHHHHHHGGGS-------CC--C-C-------CC
T ss_pred HHHHHHHHhCC----CC---CCcCHHHHHHHHhhhhcccChhhHHHHHHHHHhccCC-------CC--C-CCCCCCCCCC
Confidence 99999999932 11 11112222211111 000 012467998887421 11 1 1111111125
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcc-----------cCCCCCCCCceEEEeecccCCcCCCC
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIK--LCGALAAAGLIAARST-----------KYFPSHQREKYAVVTLVDCRSILEPV 315 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT--~~~~l~aa~~~~l~~~-----------~~~~~~~~~~~~~~~~v~~R~~~~~~ 315 (478)
....+.++.+.+++|+++|+++|+| ++.+++|||+.+|+++ + + ++++.+|+|+++|....
T Consensus 216 ~~~~~~l~~~~~~~l~~~a~~~~vt~~~~~~l~aa~a~~L~~~~~~~~~~~~~~~--g---~~dv~~g~~~~gR~~~~-- 288 (493)
T 4hvm_A 216 ETSRLRVPGSRWQALTEPGGPLGGNGSLAMAALTAWWLWTQGAGTGTDTGAGTGT--G---KDSLYLSTEVDLRDHLQ-- 288 (493)
T ss_dssp EEEEEEEEHHHHHHHHCC------CHHHHHHHHHHHHHHHC---------------------CEEEEEEEEEHHHHTT--
T ss_pred eeEEEEcCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhcccccccCcC--C---CCCEEEEeeccCCCCcc--
Confidence 6677899999999999999999999 9999999999999998 5 4 67999999999997632
Q ss_pred CCCCceeeeeeeccccccCCC--chhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHH--HhhCCCCCCCccccceee
Q 011748 316 LSDDYLGFYHSAILNTHDVNG--EEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCK--AIDNPGLTPASSLRTAVI 391 (478)
Q Consensus 316 ~~~~~vG~f~~~~~~~~~~~~--~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~ 391 (478)
. ++++|+|+|++|+++.+++ ..+|.++++++++++.+.++| ... +..+... ..............+.++
T Consensus 289 ~-~~~vG~f~n~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p-----~~~i~~~~~~l~~~~~~~~~~lf~~~~ 361 (493)
T 4hvm_A 289 L-GSVVGPLTDRVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLP-----YHDVVDLAVDLGVVTPPRVAARWDVAV 361 (493)
T ss_dssp C-CSBCSCCEEEEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCC-----HHHHHHHHHHTTSCBTTBTTGGGCEEE
T ss_pred h-hcCeEeeeceeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCC-----HHHHHHHHhhhCcccCCCCCcceeEEE
Confidence 2 6799999999999999999 999999999999999999999 532 2222220 111111110111222222
Q ss_pred EeecCcccc-ccccc-----ccceEEeeEEE--------Eeec------cccc-CeEEEEEEEecCeeEEEEEcCCCCCC
Q 011748 392 SVFEDPIVD-ETNKL-----HQEIGLEDYIG--------CSSV------HGVG-PSIAIFDTIRDGWLDCACVYPSPLHS 450 (478)
Q Consensus 392 ~v~~~~~~~-~~~~~-----~~~~~~~~~~~--------~~~~------~~~~-~~~~~~~~~~~g~l~l~~~y~~~~~~ 450 (478)
+. .+.... ..... ...+.+..+.. .... ..++ ..+.+.+...+|++.+.+.|+..+|
T Consensus 362 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~~l~- 439 (493)
T 4hvm_A 362 HL-CRNAPSSSLTRGERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRRTHP- 439 (493)
T ss_dssp CC---------------------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC----
T ss_pred EE-EecCCccccccccccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEccccC-
Confidence 11 111000 00000 11222322211 0000 0111 1256666666899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 011748 451 REQLQQLIDDMKKILVEGGSFGDGETGE 478 (478)
Q Consensus 451 ~~~i~~~~~~~~~~L~~~~~~~~~~~~~ 478 (478)
+++|++++++|..+|++++.+|+.++++
T Consensus 440 ~~~i~~l~~~~~~~L~~~~~~p~~~l~~ 467 (493)
T 4hvm_A 440 AGGGSALLDGLDAAMAQAVADPSAPLPH 467 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHCTTSBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 9999999999999999999999999875
No 4
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-38 Score=356.28 Aligned_cols=411 Identities=12% Similarity=0.094 Sum_probs=284.6
Q ss_pred cCCCcc-cceeeeec-cC--CCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCC-CcceEecCCCCCCceE
Q 011748 18 RPVGGT-EYSWCKAV-PT--GTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSAD-AKTFSFITPPEPHIQI 92 (478)
Q Consensus 18 R~l~~~-e~~~~~~~-~~--~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (478)
-||++. +..|+... .+ +.|+....++++|.+|.++|++||+.+++|||+||++|...++ .+.|++.......+.+
T Consensus 13 ~PLS~~Q~~lw~~~~~~~~~~~Y~~~~~~~l~g~ld~~~l~~A~~~lv~rH~~LRt~f~~~~~~~p~Q~v~~~~~~~~~~ 92 (1304)
T 2vsq_A 13 YYLSPMQEGMLFHAILNPGQSFYLEQITMKVKGSLNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEE 92 (1304)
T ss_dssp EECCHHHHHHHHHHHHSTTSCTTEEEEEEEEEECCCHHHHHHHHHHHHHHCGGGGEEEECSSCSSCEEEEESCCCCCEEE
T ss_pred CCCCHHHHHHHHHHhhCCCCCceEEEEEEEEcCCcCHHHHHHHHHHHHHhhhhceEEEEEcCCCeEEEEECCCCCCceEE
Confidence 478877 44576433 22 3467788999999999999999999999999999999987654 4777666544334455
Q ss_pred eecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHH
Q 011748 93 QHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAA 172 (478)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~ 172 (478)
.++ +. .+.+.....+.+.++++... ||+ + .++|+||+.+++++++++.|++++||+++||||+.
T Consensus 93 ~d~--~~-----~~~~~~~~~~~~~~~~~~~~-~fd----l----~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S~~ 156 (1304)
T 2vsq_A 93 IDL--TH-----LTGSEQTAKINEYKEQDKIR-GFD----L----TRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFG 156 (1304)
T ss_dssp EEC--TT-----SCHHHHHHHHHHHHHHHHHH-CCC----T----TTSCSEEEEEEEEETTEEEEEEEEEGGGCCHHHHH
T ss_pred EEC--CC-----CCchhHHHHHHHHHHHHhcC-CCC----C----CCCCcEEEEEEEECCCcEEEEEecCceeechhhHH
Confidence 444 11 00000012234444455444 554 4 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccCCCCccccccCCCCCcchhhcc---CC--CCCCchhhhcchhhhhcccccCcccCCCCCC--CCCC
Q 011748 173 AVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFI---PS--GKANKPFWARGVDMLGYSLNSLRLSNISFVD--ADSP 245 (478)
Q Consensus 173 ~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~--~~~~ 245 (478)
+|+++|.++|.+...+.. .. .++.+++.++. .. ....+.||++.+... ..+..+|... ....
T Consensus 157 ~l~~el~~~Y~~~~~g~~-~~----l~~~~~y~d~~~~~~~~~~~~~~~yW~~~L~~~------~~~~~lp~~~~~~~~~ 225 (1304)
T 2vsq_A 157 IVVQDLFKVYNALREQKP-YS----LPPVKPYKDYIKWLEKQDKQASLRYWREYLEGF------EGQTTFAEQRKKQKDG 225 (1304)
T ss_dssp HHHHHHHHHHHHHHTTCC-CC----CCCCCCTHHHHHHHHTSCHHHHHHHHHHHHTTC------CCCCTTTTTCCCSSCC
T ss_pred HHHHHHHHHHHHhhcCCC-CC----CCCcccHHHHHHHHhcchhhHHHHHHHHHhCCC------CccccCCCCCCccccc
Confidence 999999999987554432 00 11122333332 11 122567999887421 1112333322 1122
Q ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeee
Q 011748 246 RFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYH 325 (478)
Q Consensus 246 ~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~ 325 (478)
.......+.++++.+++|+++|+++|+|++++++|||+.+|++++ + ++++++|+|+++|....+.. ++.+|+|+
T Consensus 226 ~~~~~~~~~l~~~~~~~L~~~a~~~~~T~~~vllaa~a~~L~r~t--g---~~dvv~G~pvsgR~~~~~~~-~~~vG~fv 299 (1304)
T 2vsq_A 226 YEPKELLFSPSEAETKAFTELAKSQHTTLSTALQAVWSVLISRYQ--Q---SGDLAFGTVVSGRPAEIKGV-EHMVGLFI 299 (1304)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--T---CSEEEEEEEECCCCTTSTTG-GGCCSSCC
T ss_pred cCcceEEEecCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C---CCCEEEEEEeCCCCccchhh-hcccccce
Confidence 344567789999999999999999999999999999999999998 5 67999999999998633333 67999999
Q ss_pred eeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCccccccc--
Q 011748 326 SAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETN-- 403 (478)
Q Consensus 326 ~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 403 (478)
|++|+++++++..+|.++++++++++.+.++|++.. +..+.... +.. +..+.++. |.+.......
T Consensus 300 ntlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p-----~~~i~~~l----~~~---~lf~~~~~-~~~~~~~~~~~~ 366 (1304)
T 2vsq_A 300 NVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVP-----LYDIQSQA----DQP---KLIDHIIV-FENYPLQDAKNE 366 (1304)
T ss_dssp EEEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSC-----HHHHHHSS----SCS---SSCCCEEE-ECSSCHHHHSCC
T ss_pred eEEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCC-----HHHHHHHh----CCC---cccceeEE-Eeeccccccccc
Confidence 999999999999999999999999999999998742 22222111 111 12222222 2221111100
Q ss_pred -ccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 011748 404 -KLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETGE 478 (478)
Q Consensus 404 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~ 478 (478)
.....+.+.++... ......+.+.+. .++++.+.+.|++++|++++|++++++|..+|++++.+|+.++++
T Consensus 367 ~~~~~g~~~~~~~~~---~~~~~dL~l~~~-~~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~ 438 (1304)
T 2vsq_A 367 ESSENGFDMVDVHVF---EKSNYDLNLMAS-PGDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVST 438 (1304)
T ss_dssp CHHHHSEEEEEEEEC---CCCCSSEEEEEE-CSSSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGG
T ss_pred ccccCCceeEeeecc---cccccCeEEEEe-cCCcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhccCccccccc
Confidence 01123445544321 112234555443 467899999999999999999999999999999999999988763
No 5
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=100.00 E-value=6.7e-37 Score=307.90 Aligned_cols=410 Identities=13% Similarity=0.089 Sum_probs=266.7
Q ss_pred ccCCCcccceeee-eccC--CCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEe
Q 011748 17 ARPVGGTEYSWCK-AVPT--GTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQ 93 (478)
Q Consensus 17 ~R~l~~~e~~~~~-~~~~--~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (478)
.-||++..+ |+. .... ..++..+.+++.|.+|.++|++||..+++|||+||++|...++++.+++.......+.+.
T Consensus 17 ~~pls~~Q~-~~~~~~~~~~~~y~~~~~~~l~g~ld~~~L~~Al~~lv~rh~~LRt~f~~~~~~~~q~v~~~~~~~~~~~ 95 (466)
T 2xhg_A 17 NVPLTPIQK-WFFGKNFTNTGHWNQSSVLYRPEGFDPKVIQSVMDKIIEHHDALRMVYQHENGNVVQHNRGLGGQLYDFF 95 (466)
T ss_dssp ECCCCHHHH-HHHHTTCTTTTCBEEEEEEEETTCCCHHHHHHHHHHHHHHSGGGGEEEECGGGCCEEEECCSSSCCCEEE
T ss_pred CCCCCHHHH-HHHhCCCCCcCcceeEEEEEcCCCCCHHHHHHHHHHHHHhChHhheEEecCCCceeeeccccccccceeE
Confidence 468888877 653 2222 235667889999999999999999999999999999999776666665543222234444
Q ss_pred ecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHH
Q 011748 94 HFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAA 173 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~ 173 (478)
..+.+ .. ...++..+.+.++.. .+|++ .++|++|+.+++.+++.+ +++++||+++||||+.+
T Consensus 96 ~~d~~-------~~-~~~~~~~~~~~~~~~-----~~fdl----~~~pl~r~~l~~~~~~~~-l~l~~HH~i~Dg~S~~~ 157 (466)
T 2xhg_A 96 SYNLT-------AQ-PDVQQAIEAETQRLH-----SSMNL----QEGPLVKVALFQTLHGDH-LFLAIHHLVVDGISWRI 157 (466)
T ss_dssp EEECT-------TC-SCHHHHHHHHHHHHH-----TTCCT----TTCCCEEEEEEEETTEEE-EEEEEEGGGCCHHHHHH
T ss_pred EEecC-------Cc-ccHHHHHHHHHHHHH-----hccCC----CCCCeEEEEEEEcCCCCE-EEEEeeeeeechhhHHH
Confidence 33221 10 111222222233333 34444 789999999999776555 88999999999999999
Q ss_pred HHHHHHHHhcCccCCCCccccccCCCCCcchhhccC------C---CCCCchhhhcchhhhhcccccCcccCCCCCCCC-
Q 011748 174 VSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFIP------S---GKANKPFWARGVDMLGYSLNSLRLSNISFVDAD- 243 (478)
Q Consensus 174 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~- 243 (478)
|+++|.++|.+...+.. ...+ ....++.++.. . ....+.||++.+.. .+...+|...+.
T Consensus 158 l~~el~~~Y~~~~~g~~-~~l~---~~~~~y~~~~~~~~~~~~~~~~~~~~~~W~~~l~~-------~~~~~lp~~~~~~ 226 (466)
T 2xhg_A 158 LFEDLATGYAQALAGQA-ISLP---EKTDSFQSWSQWLQEYANEADLLSEIPYWESLESQ-------AKNVSLPKDYEVT 226 (466)
T ss_dssp HHHHHHHHHHHHHTTCC-CCCC---CCCSCHHHHHHHHHHHTTSHHHHTTHHHHHHHHHH-------CCCCCCCCSSCCS
T ss_pred HHHHHHHHHHHHHcCCC-CCCC---CCCCCHHHHHHHHHHHhcCccchhhhHHHHHhhcc-------CCcccCCcccccc
Confidence 99999999987544432 0011 11223333221 1 12357899988742 112234433221
Q ss_pred --CCCcceEEEEecCHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCC-CCCCC
Q 011748 244 --SPRFSQVLRLQLNRDETGRLVEGC-KSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEP-VLSDD 319 (478)
Q Consensus 244 --~~~~~~~~~~~l~~~~~~~l~~~~-r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~-~~~~~ 319 (478)
.........+.++.+.+++|++.| +++|+|++.+++|||+.++++++ + ++++++|+++++|....+ +...+
T Consensus 227 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~t~~~~llaa~~~~l~~~~--~---~~dv~ig~~~~gR~~~~~~~~~~~ 301 (466)
T 2xhg_A 227 DCKQKSVRNMRIRLHPEETEQLLKHANQAYQTEINDLLLAALGLAFAEWS--K---LAQIVIHLEGHGREDIIEQANVAR 301 (466)
T ss_dssp SCBGGGEEEEEEECCHHHHHHHHHTGGGTTTCCHHHHHHHHHHHHHHHHH--C---CSEEEEEEEECCCCSCSTTCCCTT
T ss_pred ccccccceEEEEEcCHHHHHHHHHHhHHhhCCCHHHHHHHHHHHHHHHHh--C---CCceEEEecCCCCCccccCCCccc
Confidence 123445677899999999999988 57899999999999999999988 5 578999999999986421 11267
Q ss_pred ceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhC---CCCCCCccccceeeEeecC
Q 011748 320 YLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDN---PGLTPASSLRTAVISVFED 396 (478)
Q Consensus 320 ~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~v~~~ 396 (478)
++|+|+|++|++++++++.+|.++++++++++.+. .++... +.. ....... ...... ......|+
T Consensus 302 ~vG~f~n~lplr~~~~~~~~~~~~l~~v~~~~~~~-~~~~~~-----~~~-~~~l~~~~~~~~~~~~-~~p~~~f~---- 369 (466)
T 2xhg_A 302 TVGWFTSQYPVLLDLKQTAPLSDYIKLTKENMRKI-PRKGIG-----YDI-LKHVTLPENRGSLSFR-VQPEVTFN---- 369 (466)
T ss_dssp CCSCCCEEEEEEEECSCCCSHHHHHHHHHHHHHHS-GGGGTH-----HHH-HHHTSCGGGSTTCCCC-CCCSEEEE----
T ss_pred cccceeeeccEEEecCCCCCHHHHHHHHHHHHHhC-ccCCcc-----cce-eeeccccccccccccc-CCCeEEEe----
Confidence 99999999999999999999999999999998774 554321 221 1111110 001000 00012222
Q ss_pred cccc-cccccccceEEeeEEEEee---ccc--------ccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHH
Q 011748 397 PIVD-ETNKLHQEIGLEDYIGCSS---VHG--------VGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKI 464 (478)
Q Consensus 397 ~~~~-~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~ 464 (478)
+.+. ......+.+.+........ ... ....+.+.+...+|+|.+.+.|+..+|++++|++++++|..+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~ 449 (466)
T 2xhg_A 370 YLGQFDADMRTELFTRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSSEQYREESIQQLSQSYQKH 449 (466)
T ss_dssp EEEECCTTCSSSSCEECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHH
T ss_pred ecCcccccccCCceecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEEChhhCCHHHHHHHHHHHHHH
Confidence 1110 0001112222222110000 000 123455655566889999999999999999999999999999
Q ss_pred HHHhccCCC
Q 011748 465 LVEGGSFGD 473 (478)
Q Consensus 465 L~~~~~~~~ 473 (478)
|++++.+|+
T Consensus 450 L~~l~~~~~ 458 (466)
T 2xhg_A 450 LLAIIAHCL 458 (466)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998764
No 6
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=100.00 E-value=9e-36 Score=295.79 Aligned_cols=396 Identities=17% Similarity=0.160 Sum_probs=254.2
Q ss_pred CCccccCCCcccceeeeeccCCCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCC-ce
Q 011748 13 PEPMARPVGGTEYSWCKAVPTGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPH-IQ 91 (478)
Q Consensus 13 ~~~~~R~l~~~e~~~~~~~~~~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~-~~ 91 (478)
|....+||++.++.++.. .++....++++|.+|.++|++||..+++|||+||++|...++++.+++....... +.
T Consensus 3 ~~~~~~pls~~Q~~~~~~----~y~~~~~~~l~g~ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~v~~~~~~~~~~ 78 (422)
T 1q9j_A 3 PGSVIRKLSHSEEVFAQY----EVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGIC 78 (422)
T ss_dssp TTSEEEECCHHHHHHHHT----TCEEEEEEEEESCCCHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEEECCSSSCCCE
T ss_pred CCceeecCCHHHHHHHhc----CceEEEEEEEecCCCHHHHHHHHHHHHHhCccceEEEEecCCcceeeeccCCCCCceE
Confidence 556778999997764421 2777788999999999999999999999999999999987776655555433223 55
Q ss_pred EeecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhH
Q 011748 92 IQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASA 171 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~ 171 (478)
+.++. .. ..... +.+ ...+|+ .++|+||+.+++ +++++.|++++||+++||||+
T Consensus 79 ~~d~~---------~~-~~~~~----~~~------~~~~~d-----~~~pl~r~~l~~-~~~~~~l~l~~hH~i~Dg~S~ 132 (422)
T 1q9j_A 79 VIDGT---------AA-TNGSP----SGN------AELRLD-----QSVSLLHLQLIL-REGGAELTLYLHHCMADGHHG 132 (422)
T ss_dssp EEC--------------------------------CCCCCC-----TTTCSEEEEEEC-CSSSCEEEEEEEGGGCCHHHH
T ss_pred EEECC---------CC-Ccchh----hhc------ccCccC-----CCCCcEEEEEEe-cCCCeEEEEEeceEEEchhhH
Confidence 55441 10 11111 111 112333 368999999999 889999999999999999999
Q ss_pred HHHHHHHHHHhcCccC-CCCccccccCCCCCcchh--hc-cC-----CC-CCCchhhhcchhhhhcccccCcccCCCCCC
Q 011748 172 AAVSKELLRLMTGREE-GGIEKEYDRKGEVSLGIE--EF-IP-----SG-KANKPFWARGVDMLGYSLNSLRLSNISFVD 241 (478)
Q Consensus 172 ~~~~~~l~~~y~~~~~-~~~~~~~~~~~~~~~~~~--~~-~~-----~~-~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~ 241 (478)
.+|+++|.++|.+... +.....++..+.....+. .. .. .. ...+.||++.+. +...+|...
T Consensus 133 ~~l~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~---------~~~~lp~~~ 203 (422)
T 1q9j_A 133 AVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRGIRKQGLSGAERFMSVMYAYEIP---------ATETPAVLA 203 (422)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCCCCCCBCHHHHHHHSSCCC-----CTTSSTTTTCC---------------------
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHhcCCcccccchhhhhhhhhhcccCC---------CcccCCCCC
Confidence 9999999999986433 221000111121111110 00 00 00 113678887763 011233222
Q ss_pred CC-CCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc--cCCCCCCCCceEEEeecccCCcCCC----
Q 011748 242 AD-SPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARST--KYFPSHQREKYAVVTLVDCRSILEP---- 314 (478)
Q Consensus 242 ~~-~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~--~~~~~~~~~~~~~~~~v~~R~~~~~---- 314 (478)
+. .........+.++.+.+++|+++|+++|+|++.+++|||+.+++++ + + +.++.+|+|+++|....+
T Consensus 204 ~~~~~~~~~~~~~~l~~~~~~~l~~~a~~~~~t~~~~l~aa~~~~l~r~~~~--~---~~~v~~g~~~~~R~~~~~~~~~ 278 (422)
T 1q9j_A 204 HPGLPQAVPVTRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQLRNT--P---HVPIPYVYPVDLRFVLAPPVAP 278 (422)
T ss_dssp -CCSBCCCCEEEECCCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHTC--S---SCCEEEEEEEETTTTSSSCCCT
T ss_pred CCCCCCCccceEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccC--C---CceEEEeeeeecccccCCCCCh
Confidence 11 1122356778999999999999999999999999999999999977 4 3 578999999999986421
Q ss_pred CCCCCceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCc-cccchhHHHHHHHHhhCCCCCCCccccceeeEe
Q 011748 315 VLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKH-FTDMNDLNFLMCKAIDNPGLTPASSLRTAVISV 393 (478)
Q Consensus 315 ~~~~~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v 393 (478)
+..++++|+|+|++|++. ..+|.++++++++++.+.++|+.. +..++ + ..+..... +..++ .. +
T Consensus 279 ~~~~~~vG~f~n~lp~~~----~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~-~----~~i~~~~~--~~~pl-~~---~ 343 (422)
T 1q9j_A 279 TEATNLLGAASYLAEIGP----NTDIVDLASDIVATLRADLANGVIQQSGLH-F----GTAFEGTP--PGLPP-LV---F 343 (422)
T ss_dssp TTBSCCEEEEEEEECCCS----SCCHHHHHHHHHHHHHHHHHHTHHHHSCCB-G----GGGGGCCC--SSSCC-CE---E
T ss_pred hhhhhhheeeeeeeeccC----CCCHHHHHHHHHHHHHHHHhcCeeeecccc-h----HHHhcccC--CCCCc-eE---E
Confidence 122679999999998764 458999999999999999888753 11110 0 01111111 11111 11 2
Q ss_pred ecCcccc-cccccccceEEeeEEEEeecccccCeEEEE-EEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 011748 394 FEDPIVD-ETNKLHQEIGLEDYIGCSSVHGVGPSIAIF-DTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSF 471 (478)
Q Consensus 394 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~ 471 (478)
| +|.+. ......+.+.++.+...... .....+.+. +...+|++.+.+ |+.. +++++++++|..+|++++.+
T Consensus 344 ~-~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~-y~~~----~~~~~l~~~~~~~L~~l~~~ 416 (422)
T 1q9j_A 344 C-TDATSFPTMRTPPGLEIEDIKGQFYC-SISVPLDLYSCAVYAGQLIIEH-HGHI----AEPGKSLEAIRSLLCTVPSE 416 (422)
T ss_dssp E-ECCCCCCSCCCCTTCEEEEEEEEECC-BSSCCCCEEEEEEETTEEEEEE-ESSC----SSHHHHHHHHHHHHHHTTTS
T ss_pred E-ecCCcCCCCCCCCCceeEeeeccccc-CCCCCceEEEEEeeCCeEEEEE-ecCc----cchHHHHHHHHHHHHHhhcC
Confidence 2 22221 11222345666665543220 112233443 556789999999 9998 89999999999999999999
Q ss_pred CCC
Q 011748 472 GDG 474 (478)
Q Consensus 472 ~~~ 474 (478)
|+.
T Consensus 417 ~~~ 419 (422)
T 1q9j_A 417 YGW 419 (422)
T ss_dssp CC-
T ss_pred ccc
Confidence 875
No 7
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=99.94 E-value=1.5e-24 Score=215.96 Aligned_cols=433 Identities=11% Similarity=0.048 Sum_probs=252.9
Q ss_pred CCC--CccccCCCcccceeeeecc--CCCce--EEEEEEEecCCC--------HHHHHHHHHHHHHhCcccceeeccCCC
Q 011748 11 EAP--EPMARPVGGTEYSWCKAVP--TGTGI--TVLALLLSKHPN--------IQLLQTALNNLQNNHPILRSKLHSSAD 76 (478)
Q Consensus 11 ~~~--~~~~R~l~~~e~~~~~~~~--~~~~~--~~~~~~l~g~ld--------~~~L~~A~~~li~rhp~Lr~~~~~~~~ 76 (478)
++| +...|++++.|..+..... .+.+. ....+++.-.++ .++|++||..+.-+||.+-+.+..+++
T Consensus 22 ~~~~~~~~~R~~~g~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~l~~~lr~AW~~lR~~hP~iA~~v~~d~~ 101 (519)
T 3fot_A 22 TGSSGRQVQRRCVGAEAIVGLEEKNRRALYDLYIATSLRNIAPASTLLTLQNLKEMFELALLDARFEHPECACTVSWDDE 101 (519)
T ss_dssp CSTTSCEEEEECCTHHHHHHCHHHHTTTTTCEEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHCGGGGCEEECCSS
T ss_pred cCCCCceEEeecCccHHHHHHhhhcCCCcceEEEEEEEEecCCCCccccHHHHHHHHHHHHHHHHhhCCcceeEEeeCCC
Confidence 447 7899999999998653322 33333 334555554443 688999999999999999999886633
Q ss_pred Cc-ceEecCCCCCCceEeecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecC----
Q 011748 77 AK-TFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPS---- 151 (478)
Q Consensus 77 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~---- 151 (478)
.+ ...+..... .-.+..+- ..++.+++. ++..+++...++.... +... +. ..+...+.++...
T Consensus 102 ~~~~~~Y~~~~~-~~~~~~Wl-~~Tf~v~~~-~~t~~e~~~~~~~~r~--~~~~--~~-----p~~~~~l~~v~~~~~~~ 169 (519)
T 3fot_A 102 VPAIITYESPES-NESARDWA-RGCIHVQPT-AKSALDLWSEMEEGRA--AAND--NT-----PSKSIELFLLSDVSTDS 169 (519)
T ss_dssp SSCEEEEECCSS-HHHHHHHH-HHHEEEEEC-SCCHHHHHHHHHHHHH--HTC---CC-----CCCSCEEEEEESSSSTT
T ss_pred CcccEEEecCCC-HHHHHHHH-HhcEEEeCC-CCCHHHHHHhhhhhhc--cccc--CC-----CccceEEEEEecccccc
Confidence 22 222222111 11111110 000111111 1333443322222111 0111 01 1134445554311
Q ss_pred ---CC--ceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCC---cccc--cc-CCCCCcchhhccCCCCC-----Cc
Q 011748 152 ---ET--QWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGI---EKEY--DR-KGEVSLGIEEFIPSGKA-----NK 215 (478)
Q Consensus 152 ---~~--~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~---~~~~--~~-~~~~~~~~~~~~~~~~~-----~~ 215 (478)
++ +..++|.+||.++||+|..+|+++|++.+........ .+.. +. ...+++++++....... .+
T Consensus 170 ~~~p~~~~~~lv~~~~H~~~DG~g~~~f~~~ll~~L~~~~~~~~~~~~~~~~~g~E~~~L~P~~e~~~~~p~~~~~~e~~ 249 (519)
T 3fot_A 170 TPIPQDATVEILFHSNHLFWDGIGCRKFVGDLFRLVGSYIGRSDSREMKKIQWGQEIKNLSPPVVDSLKLDINTLGSEFD 249 (519)
T ss_dssp SCCCTTCEEEEEEEECGGGCCHHHHHHHHHHHHHHHTTSTTC-CGGGSCCCCTTTTGGGSCCCTGGGBSSCGGGCCHHHH
T ss_pred ccCCCCceEEEEEEeCceeEchHhHHHHHHHHHHHHHhhhccCCccCCCcCCCCcccccCCcCHHHHhCCCCCCCCHHHH
Confidence 23 7999999999999999999999999999986432110 0001 11 12355566666543211 22
Q ss_pred hhhhcchhhhhcccccCcccCCCCCCCCCCCcceEEEEecCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHhcccCC
Q 011748 216 PFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSR---GIKLCGALAAAGLIAARSTKYF 292 (478)
Q Consensus 216 ~~w~~~l~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~~r~~---~vT~~~~l~aa~~~~l~~~~~~ 292 (478)
..|.+++.... ...+...+|+... +..++.+.+.|+.+.+++|++.||++ |+|++++++||+++++.+...-
T Consensus 250 ~~~~~~~~~~~---~~~~~~~~P~~~~--~~~~~~~~~~ls~~~t~~L~~~ck~~~~~g~Tvt~~l~Aa~~~al~~~~~~ 324 (519)
T 3fot_A 250 DKCTEYTSALV---ANYKSRGMKFQPG--LALPRCVIHKLSADESIDIVKAVKTRLGPGFTISHLTQAAIVLALLDHLKP 324 (519)
T ss_dssp HHHHHHHHHHH---HHHHSCCSBCCCC--CCCEEEEEEECCHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhh---cCCCcccCCCCCC--CCCcceEEEEcCHHHHHHHHHHHHhcCCCCeeHHHHHHHHHHHHHHhhcCC
Confidence 23333221110 0111122343221 24556788999999999999999999 9999999999999999885310
Q ss_pred -CCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCCC-----c---hh-----HHHHHHHHHHHHHhhccCC
Q 011748 293 -PSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNG-----E---EE-----LWELATRSYTSFANAKNSD 358 (478)
Q Consensus 293 -~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~~-----~---~~-----f~~l~~~v~~~~~~~~~~~ 358 (478)
.......+.+++|+|+|++++++...+.+|.+++++++++..-. . +. |+++++++++......++.
T Consensus 325 ~~~~~~~~~~~~~pvnlR~~l~~~~~~n~~~~~~~~~~~~v~~i~~~~~~~~~~e~~~~~~~~~~ar~l~~~y~~~~~np 404 (519)
T 3fot_A 325 NDLSDDEVFISPTSVDGRRWLREDIASNFYAMCQTAAVVRIENLKSITVSHKDEKELQVRALESACRNIKKSYRQWLENP 404 (519)
T ss_dssp --CCTTCCEEEEEEEECGGGBCHHHHTSCCSCCEEEEEEEECCGGGGCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cccCCCccEEEEeeeeccccCCCcccccccceeeeeeeeEecCccccccccchhhhhhHhHHHHHHHHHHHHhhcccCCc
Confidence 01123479999999999998764333456888887777663211 1 11 6778888887776654443
Q ss_pred CccccchhHH--HHHHHHhhCCCCCCCccccceeeEeecCcccc-c--cccccc-------ceEEeeEEEEeecccccCe
Q 011748 359 KHFTDMNDLN--FLMCKAIDNPGLTPASSLRTAVISVFEDPIVD-E--TNKLHQ-------EIGLEDYIGCSSVHGVGPS 426 (478)
Q Consensus 359 ~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~--~~~~~~-------~~~~~~~~~~~~~~~~~~~ 426 (478)
... -++.+. .+.......+. . .....++.+ +++|. + ++..++ .+.|+++++.... ....
T Consensus 405 ~i~-~l~~~~k~~~~~l~~~~~~-~-~~~~~tp~l----SslG~vd~~lp~~y~~~~~~~~~~~V~~~~~~~~~--~~~~ 475 (519)
T 3fot_A 405 FLQ-ALGLRVHNFEASYLHAKPI-P-FEGEANPLF----ISDGINERFIPHEIKQTATGENVLSVESIDFVVNQ--SLPY 475 (519)
T ss_dssp THH-HHHHHHHHHHHHHHHHCSS-C-CCSBCCCEE----EEEEEGGGTSCSEEEETTTTEEEEEEEEEEEEECC--CSSS
T ss_pred hHH-HhHHHHHHHHHHHhcccCC-C-CCCccCccc----ccCCccccccchhhccccCCCCceEEEEEEEEccc--cCCc
Confidence 211 011100 11111112210 0 111111222 44553 2 455554 4889999876432 3556
Q ss_pred EEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhc
Q 011748 427 IAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGG 469 (478)
Q Consensus 427 ~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~ 469 (478)
+.+.+++++|+|.|++.||...|+++.|+.+++.++..|.++.
T Consensus 476 ~~~~~~Tf~g~L~l~~~yn~a~~~~e~v~~~l~~v~~~L~~f~ 518 (519)
T 3fot_A 476 LAIRLDSWRDASTLNIIYNDANYTEAEVQKYLQSIVEFMLAFR 518 (519)
T ss_dssp CEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred eEEEEEEECCEEEEEEEeccccCCHHHHHHHHHHHHHHHHHhc
Confidence 7888999999999999999999999999999999999998764
No 8
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=99.16 E-value=2.6e-09 Score=105.38 Aligned_cols=273 Identities=12% Similarity=0.095 Sum_probs=160.1
Q ss_pred CCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEeecccCCccccccCCCCCCchHHHHHHHHhhcCCC
Q 011748 48 PNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTW 127 (478)
Q Consensus 48 ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (478)
...+.|++|+.+++..++-|--|+...+++...+..+ .+.+.+...+.......+.+. .....+ +.+- |.
T Consensus 56 ~~~~~Lk~sLs~~L~~f~plAGRl~~~~~g~~~i~c~--~~Gv~fv~A~~d~~l~~l~~~-~p~~~~-----~~l~--p~ 125 (439)
T 4g22_A 56 FDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECN--GEGVLFVEAESDGVVDDFGDF-APTLEL-----RRLI--PA 125 (439)
T ss_dssp TCHHHHHHHHHHHTTTTGGGGCEEEECTTSCEEEECC--CCCEEEEEEEESSCGGGGTTC-CCCGGG-----GGGS--CC
T ss_pred cHHHHHHHHHHHHHhhccccceeeeeCCCCCEEEEEC--CCCCEEEEEEcCCcHHHhcCC-CCCHHH-----HhcC--CC
Confidence 3479999999999999999999998654432222122 124444433211111111110 011111 1110 11
Q ss_pred CCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCccccccCCCCCcchhh-
Q 011748 128 TNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEE- 206 (478)
Q Consensus 128 ~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~- 206 (478)
.+... + ....|++.+.+..+..++..|.+.+||.++||.|+..|++.+.+.+++.... ..+.++.
T Consensus 126 -~~~~~-~-~~~~pll~vQvT~f~cGG~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~rg~~~~-----------~~P~~dr~ 191 (439)
T 4g22_A 126 -VDYSQ-G-ISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVT-----------LPPFIDRT 191 (439)
T ss_dssp -CCTTS-C-TTSSCSEEEEEEECTTSCEEEEEEECTTTCCHHHHHHHHHHHHHHHTTCCCS-----------SCCBCCGG
T ss_pred -CCccc-c-cccCceeEEEEEEecCCCEEEEEEeeeccCcHHHHHHHHHHHHHHhCCCCCC-----------CCCccccc
Confidence 11000 0 0346999999999888999999999999999999999999999999753211 0111111
Q ss_pred ccCCCCCCchhhhcchhhhhcccccCcccCCCCCC-C--CCC-CcceEEEEecCHHHHHHHHHHHHhc----CCChHHHH
Q 011748 207 FIPSGKANKPFWARGVDMLGYSLNSLRLSNISFVD-A--DSP-RFSQVLRLQLNRDETGRLVEGCKSR----GIKLCGAL 278 (478)
Q Consensus 207 ~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~-~--~~~-~~~~~~~~~l~~~~~~~l~~~~r~~----~vT~~~~l 278 (478)
.+......... ++...+. +...++... + ..+ .......+.++++..++|++.|... .+|-+.++
T Consensus 192 ~l~~~~pp~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~a~~~~~~~~~St~dal 263 (439)
T 4g22_A 192 LLRARDPPQPQ----FQHIEYQ----PPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEML 263 (439)
T ss_dssp GGCCCSSCCCS----SCCGGGS----CCC---------------CEEEEEEEECHHHHHHHHHGGGGGGCCCCCCHHHHH
T ss_pred cccCCCCCCCC----cCccccc----CCCCCcccccccccCCcccceEEEEEECHHHHHHHHHHhhccCCCCCccHHHHH
Confidence 11000000000 0000000 000000000 0 001 2234556899999999999998754 48899999
Q ss_pred HHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCCC--chhHHHHHHHHHHHHHhh
Q 011748 279 AAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNG--EEELWELATRSYTSFANA 354 (478)
Q Consensus 279 ~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~~--~~~f~~l~~~v~~~~~~~ 354 (478)
.|-++..+.+-+.+. ......+..++|+|++..++++..++|+.+..........+ +.++..+|+.|++.+.+.
T Consensus 264 ~A~iWr~~~rAr~~~--~~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~el~~~~L~~~A~~Ir~ai~~~ 339 (439)
T 4g22_A 264 AGHVWRCACKARGLE--VDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARM 339 (439)
T ss_dssp HHHHHHHHHHHTTCC--TTCEEEEEEEEECTTTSSSCCCTTBCSCCEEEECCEEEHHHHHHSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCC--CCCcEEEEEEEcccCCCCCCCCCCcccceeehhhcceEHHHHhhCcHHHHHHHHHHHHHhh
Confidence 998888877754222 24578899999999999888888889987765433332221 347889999999888764
No 9
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=99.12 E-value=5.3e-09 Score=102.59 Aligned_cols=257 Identities=14% Similarity=0.110 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEeecccCCccccccCCCCCCchHHHHHHHHhhcCCCC
Q 011748 49 NIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWT 128 (478)
Q Consensus 49 d~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (478)
..+.|++|+.+++..++-|.-|+.. +....... +.+.+...........+.+....... ++ .+ .|..
T Consensus 59 ~~~~Lk~sLs~~L~~~~plAGRl~~---~~~i~c~~---~Gv~fv~A~~d~~l~~~~~~~p~~~~----~~-~l--~p~~ 125 (421)
T 2bgh_A 59 TSQHLKQSLSKVLTHFYPLAGRINV---NSSVDCND---SGVPFVEARVQAQLSQAIQNVVELEK----LD-QY--LPSA 125 (421)
T ss_dssp HHHHHHHHHHHHTTTSGGGGSEEET---TTEEECCC---CCEEEEEEEESSCHHHHHSCCSSGGG----GG-GG--SSSC
T ss_pred HHHHHHHHHHHHhhhcchhccccCC---CcEEEEcC---CceEEEEEEEcCCHHHHhccCCChHH----HH-hc--CCCC
Confidence 3789999999999999999999963 12111111 12333322110000000000000000 00 11 0221
Q ss_pred CCCC--CCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCccccccCCCCCcchhh
Q 011748 129 NPSH--QSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEE 206 (478)
Q Consensus 129 ~~~~--~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 206 (478)
...+ .. ....|++.+.+..+..++..|.+.+||.++||.|+..|++.+.+.+++.... ..+.++.
T Consensus 126 ~~~~~~~~--~~~~pll~vQvt~f~cgG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~~~~-----------~~P~~dr 192 (421)
T 2bgh_A 126 AYPGGKIE--VNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEI-----------VLPNFDL 192 (421)
T ss_dssp SSSSSSSC--CCTTCSEEEEEEECTTSCEEEEEEEETTTCCHHHHHHHHHHHHHHHTTCSCC-----------CCCBCSH
T ss_pred CCcccccc--ccCCceEEEEEEEEcCCCEEEEEEeeEEechHHHHHHHHHHHHHHhcCCCCC-----------CCCcccc
Confidence 0000 00 0457999999999888899999999999999999999999999988643100 1111110
Q ss_pred ---ccCCCCCCchhhhcchhhhhcccccCcccCCCCCCCCCCCcceEEEEecCHHHHHHHHHHHHh----cCCChHHHHH
Q 011748 207 ---FIPSGKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKS----RGIKLCGALA 279 (478)
Q Consensus 207 ---~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~~r~----~~vT~~~~l~ 279 (478)
..+.. ...|..............+.++.+..++|++.|.. ..+|-+.++.
T Consensus 193 ~~~l~p~~-----------------------~~~~~~~~~~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~~~~St~d~l~ 249 (421)
T 2bgh_A 193 AARHFPPV-----------------------DNTPSPELVPDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVV 249 (421)
T ss_dssp HHHHSCCC-----------------------TTCCCCCCCCCSSEEEEEEEECHHHHHHHHHHTC-----CCCCHHHHHH
T ss_pred ccccCCCc-----------------------ccCCCCccCCccceEEEEEEECHHHHHHHHHHhhccCCCCCCchhHhHH
Confidence 00100 00000000011233455789999999999999875 3579999999
Q ss_pred HHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCCCchhHHHHHHHHHHHHHhh
Q 011748 280 AAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANA 354 (478)
Q Consensus 280 aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~ 354 (478)
|.++..+.+-+....+......+..++|+|++..++++...+|+.+.............++..+|+.|++.+.+.
T Consensus 250 A~iW~~~~~Ar~~~~~~~~~~~l~~~vd~R~rl~pplP~~y~GN~~~~~~~~~~~~~~~~l~~~a~~ir~ai~~~ 324 (421)
T 2bgh_A 250 AYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKT 324 (421)
T ss_dssp HHHHHHHHHHHHHHSCCCSCEEEEEEEESGGGSSSCCCTTBCSCCEEEEEEEECTTCCCCGGGGHHHHHHHTCCC
T ss_pred HHHHHHHHHHhcccCCCCCceEEEEEecCccccCCCCCCCccceEEEEEEEEecccccccHHHHHHHHHHHHHHH
Confidence 988877666431111113478899999999999877878899988776655555555678999999999888664
No 10
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=98.98 E-value=2.6e-08 Score=98.73 Aligned_cols=269 Identities=11% Similarity=0.130 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHhCcccceeeccC---CCCcceEecCCCCCCceEeecccCCccccccCCCCCCchHHHHHH------H
Q 011748 50 IQLLQTALNNLQNNHPILRSKLHSS---ADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILE------H 120 (478)
Q Consensus 50 ~~~L~~A~~~li~rhp~Lr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 120 (478)
.+.|++|+.+++..+|-|.-|+... ++......... +.+.+...+.. ..+.+... .
T Consensus 57 ~~~Lk~sLs~~L~~~~plAGRl~~~~~~~g~~~i~c~~~--~gv~fv~A~~~-------------~~l~~l~~~~~~~~~ 121 (453)
T 2xr7_A 57 IPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTG--NSVSVIFSESD-------------MDFNYLIGYHPRNTK 121 (453)
T ss_dssp HHHHHHHHHHHHTTSGGGGSCCEEESSTTCCCEEEEETT--CCCEEEEEECC-------------SCHHHHTCSSCCCGG
T ss_pred HHHHHHHHHHHhhhccccCeeEEccCCCCCCEEEEecCC--CceEEEEEecC-------------CCHHHhhccCCCChh
Confidence 5899999999999999999999754 23333333321 23444333111 11111100 0
Q ss_pred HhhcCCCCCCCCCCCCCCC-----CCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhc-CccCCCCcccc
Q 011748 121 ELNRNTWTNPSHQSNTNSD-----SNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMT-GREEGGIEKEY 194 (478)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~-----~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~-~~~~~~~~~~~ 194 (478)
.+.. +.-..+.. +.. .|++.+.+..+..++..|.+.+||.++||.|+..|++.+.+.++ +...... +
T Consensus 122 ~~~~--l~p~~~~~--~~~~~~~~~pll~vQvT~f~cGG~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r~G~~~~~~---~ 194 (453)
T 2xr7_A 122 DFYH--FVPQLAEP--KDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFL---A 194 (453)
T ss_dssp GGGG--GSCCCCCC--EEETTEEECCCEEEEEEEETTTEEEEEEEECTTTCCSHHHHHHHHHHHHHHHTTTCGGGS---C
T ss_pred hhhc--CCCCCCCc--ccccccccCCeEEEEEEEccCCcEEEEEeeeeeeechhHHHHHHHHHHHHhhcCCCcccC---C
Confidence 0000 11000000 012 78999999888888999999999999999999999999999987 4211000 0
Q ss_pred ccCCCCCcchhh-ccCCCCC-CchhhhcchhhhhcccccCcccCC-CCCCCCCCCcceEEEEecCHHHHHHHHHHHHh--
Q 011748 195 DRKGEVSLGIEE-FIPSGKA-NKPFWARGVDMLGYSLNSLRLSNI-SFVDADSPRFSQVLRLQLNRDETGRLVEGCKS-- 269 (478)
Q Consensus 195 ~~~~~~~~~~~~-~~~~~~~-~~~~w~~~l~~~~~~~~~~~~~~l-p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~r~-- 269 (478)
+. ..+.++. .+..... ...++.. +.. .+ .+ +......+.......+.++.+..++|++.|..
T Consensus 195 ~~---~~P~~dr~~l~~p~~~~~~~~~~------~~~--~~--~~~~~~~~~~~~~~~~~~f~f~~~~i~~Lk~~a~~~~ 261 (453)
T 2xr7_A 195 NE---FIPFYDRSVIKDPNGVGMSIWNE------MKK--YK--HMMKMSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRR 261 (453)
T ss_dssp GG---GSCBCCCSSSCCSSCHHHHTTTT------GGG--CT--TTSCCSCCCCCCSCCCEEEEECHHHHHHHHHHHHHHS
T ss_pred CC---CCCccccccccCCCCcchHHHHh------ccc--cC--CccccccccCCCCceEEEEEECHHHHHHHHHHHhhcC
Confidence 00 0011110 0100000 0001000 000 00 00 00000011122345789999999999999975
Q ss_pred ---cCCChHHHHHHHHHHHHhcccCCC--C-CCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccC---CCchhH
Q 011748 270 ---RGIKLCGALAAAGLIAARSTKYFP--S-HQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDV---NGEEEL 340 (478)
Q Consensus 270 ---~~vT~~~~l~aa~~~~l~~~~~~~--~-~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~---~~~~~f 340 (478)
..+|-+.++.|.++..+.+-+.+. . .......+..++|+|++..++++...+|+.+......... ....++
T Consensus 262 ~~~~~~St~~~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplP~~Y~GN~~~~~~~~~~~~el~~~~~l 341 (453)
T 2xr7_A 262 PKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGF 341 (453)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCTTSCSSSCCCTTBCSCCCCEEEEEEEHHHHTSSSHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhccccccCCCCcceEEEEEecccccCCCCCCcccccceeeeeeeeeeHHHhcCcchH
Confidence 348999999998887776643210 0 1244788999999999998778888888876544332222 234689
Q ss_pred HHHHHHHHHHHHh
Q 011748 341 WELATRSYTSFAN 353 (478)
Q Consensus 341 ~~l~~~v~~~~~~ 353 (478)
..+|+.|++.+.+
T Consensus 342 ~~~a~~Ir~ai~~ 354 (453)
T 2xr7_A 342 TIAVELIGEAIRK 354 (453)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
No 11
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=98.92 E-value=1.1e-07 Score=94.13 Aligned_cols=279 Identities=10% Similarity=0.078 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHhCcccceeec-cC--CCCcceEecCCCCCCceEeecccCCccccccCCCCCCchHHHHHHHHhhcCC
Q 011748 50 IQLLQTALNNLQNNHPILRSKLH-SS--ADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNT 126 (478)
Q Consensus 50 ~~~L~~A~~~li~rhp~Lr~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (478)
.+.|++|+.+++..++-|.-|+. .. ++......... +.+.+...+.......+.. ....... .+ ..+- |
T Consensus 62 ~~~Lk~sLs~~L~~~~plAGRl~~~~~~~g~~~i~c~~~--~gv~fv~A~~~~~l~~l~~--~~~~~~~-~~-~~l~--p 133 (454)
T 2e1v_A 62 VPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEG--DSVAVTFAECNLDLNELTG--NHPRNCD-KF-YDLV--P 133 (454)
T ss_dssp HHHHHHHHHHHHTTCGGGGSEEEECSSSSSCCEEEECTT--CCEEEEEEEECSCGGGTSS--SSCEEGG-GG-GGGS--C
T ss_pred HHHHHHHHHHHhhhccccceeeeeccCCCCCEEEEECCC--CcEEEEEEEeCCCHHHhcC--CCCCcch-hh-hcCC--C
Confidence 58999999999999999999997 43 33333333211 2344433321111111100 0000000 00 0110 1
Q ss_pred CCCCCCCCCC-CCCCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhc-CccCCCCccccccCCCCCcch
Q 011748 127 WTNPSHQSNT-NSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMT-GREEGGIEKEYDRKGEVSLGI 204 (478)
Q Consensus 127 ~~~~~~~~~~-~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~-~~~~~~~~~~~~~~~~~~~~~ 204 (478)
.. +...... ....|++.+.+..+..++..|.+.+||.++||.|+..|++.+.+.++ +.. +... .++ ...+.+
T Consensus 134 ~~-~~~~~~~~~~~~pll~vQvT~f~cgG~~lg~~~~H~v~Dg~~~~~Fl~awa~~~r~g~~-~~~~-~~~---~~~P~~ 207 (454)
T 2e1v_A 134 IL-GESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNN-DESF-LAN---GTRPLY 207 (454)
T ss_dssp CC-CCCEECSSCEEEECEEEEEEEETTTEEEEEEEECGGGCCHHHHHHHHHHHHHHHHTTSC-CHHH-HHH---SCCCBC
T ss_pred CC-CCcccccccccCceEEEEEEEecCCcEEEEEEeeeeecchhHHHHHHHHHHHHhccCCC-cccc-CCC---CCCCcc
Confidence 11 0000000 01128999888888878999999999999999999999999999998 421 0000 000 001111
Q ss_pred hhccCCCCCCchhhhcchhhhhcccccCcccCCCCCCCCCCCcceEEEEecCHHHHHHHHHHHHhc-----CCChHHHHH
Q 011748 205 EEFIPSGKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSR-----GIKLCGALA 279 (478)
Q Consensus 205 ~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~~r~~-----~vT~~~~l~ 279 (478)
+..+....-...++..+... .. .....+..++ .+.......+.++.+..++|++.|... .+|-+.++.
T Consensus 208 dr~l~~p~~~~~~~~~~~~~-~~-~~~~~~~~~~-----~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~~~~~St~d~l~ 280 (454)
T 2e1v_A 208 DRIIKYPMLDEAYLKRAKVE-SF-NEDYVTQSLA-----GPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVAC 280 (454)
T ss_dssp CCCCCCHHHHHHHHHHTTCT-TH-HHHCCCCCCC-----CCCCEEEEEEEECHHHHHHHHHHHHHHCTTCSCCCHHHHHH
T ss_pred cccCCCCCcchHHHHhhhcc-cc-ccccCcccCC-----CCCCceEEEEEECHHHHHHHHHHHhhcCCCCCcccHHHHHH
Confidence 11111000000111100000 00 0000000111 112233557899999999999999753 489999999
Q ss_pred HHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCC---CchhHHHHHHHHHHHHHhh
Q 011748 280 AAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVN---GEEELWELATRSYTSFANA 354 (478)
Q Consensus 280 aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~---~~~~f~~l~~~v~~~~~~~ 354 (478)
|.++..+.+-+ . .+...+..++|+|++..++.+...+|+.+.......... ...++..+|+.|++.+.+.
T Consensus 281 A~lWr~~~~Ar--~---~~~~~l~~~vd~R~rl~pplP~~Y~GN~~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~ 353 (454)
T 2e1v_A 281 AYIWSCIAKSR--N---DKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKT 353 (454)
T ss_dssp HHHHHHHHHHH--C---CSEEEEEEEEECGGGSSSCCCTTBCSCCEEEEEEEEEGGGTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhc--C---CCceEEEEEecchhccCCCCCcccccceeeeEEeecchhhccccccHHHHHHHHHHHHHhh
Confidence 98888877643 2 457889999999999987788888898776543333332 2368999999999988775
No 12
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=98.68 E-value=9.2e-07 Score=87.60 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=114.0
Q ss_pred CCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCccccccCCCCCcchh--hccCCCCCCch
Q 011748 139 DSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIE--EFIPSGKANKP 216 (478)
Q Consensus 139 ~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 216 (478)
..|++.+.+.- -.++..|.+.+||.++||.|+..|++.+.+.+++...... ... .+.++ ...+......+
T Consensus 133 ~~pll~vQvT~-~~GG~~lg~~~~H~v~Dg~g~~~Fl~awa~~~rg~~~~~~--~~~-----~p~~dr~~~~p~~~~~~p 204 (451)
T 2rkv_A 133 PKPVILLQLNF-IKGGLILTVNGQHGAMDMVGQDAVIRLLSKACRNDPFTEE--EMT-----AMNLDRKTIVPYLENYTI 204 (451)
T ss_dssp CCBSEEEEEEE-EBTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCCCHH--HHH-----HTTCCSTTSSCCCTTCCC
T ss_pred CCceEEEEEEE-ecCceeeeeeehhccccHHHHHHHHHHHHHHhcCCCCCcc--ccc-----cccCchhhccccccccCC
Confidence 47888877664 3589999999999999999999999999999975311000 000 00000 00010000000
Q ss_pred hhhcchhhhhcccccCcccCCCCCCCCCCCcceEEEEecCHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHhccc
Q 011748 217 FWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSR------GIKLCGALAAAGLIAARSTK 290 (478)
Q Consensus 217 ~w~~~l~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~~r~~------~vT~~~~l~aa~~~~l~~~~ 290 (478)
...++...+. ..+ . .. .............+.++.+..++|++.|.+. .+|-+.++.|.++..+.+-+
T Consensus 205 --~~~~~~~~~~--~~~-~-~~-~~~~~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~~~~~~St~d~l~A~~Wr~~~~Ar 277 (451)
T 2rkv_A 205 --GPEVDHQIVK--ADV-A-GG-DAVLTPVSASWAFFTFSPKAMSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVR 277 (451)
T ss_dssp --CGGGTTCBCC--TTS-C-C--------CCEEEEEEEECHHHHHHHHHHHHTTCCTTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred --CccccccccC--CCC-C-CC-CCCCCCCCceEEEEEECHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 0000000000 000 0 00 0000112233557899999999999999754 37889999998888776643
Q ss_pred CCC-CCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCCC--chhHHHHHHHHHHHHHh
Q 011748 291 YFP-SHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNG--EEELWELATRSYTSFAN 353 (478)
Q Consensus 291 ~~~-~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~~--~~~f~~l~~~v~~~~~~ 353 (478)
++ ........+..++|+|++.. .+...+|+.+..........+ ..++..+|+.|++.+.+
T Consensus 278 -~~~~~~~~~~~l~~~vd~R~rl~--lP~~y~GN~~~~~~~~~~~~el~~~~L~~~a~~ir~ai~~ 340 (451)
T 2rkv_A 278 -LERIDGSAPTEFCRAVDARPAMG--VSNNYPGLLQNMTYHNSTIGEIANESLGATASRLRSELDP 340 (451)
T ss_dssp -TTTSCTTSEEEEEEEEECHHHHT--CCTTCCSCCEEEEEEEEEHHHHHHSCHHHHHHHHHTTCCH
T ss_pred -hccCCCCCceEEEEEecccccCC--CCCCCcccceeeecccCcHHHhccchHHHHHHHHHHHhcc
Confidence 11 11245788999999999875 335678876654433322211 35688888888866543
No 13
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=92.52 E-value=2.7 Score=37.19 Aligned_cols=31 Identities=3% Similarity=0.016 Sum_probs=28.0
Q ss_pred eeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 437 WLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 437 ~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
-|.+++.|+..+.|-+.+.+|++.+...|+.
T Consensus 209 ~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~ 239 (256)
T 3mae_A 209 MVNLCLSIDHRILDGLLAGKFLQAIKANVEK 239 (256)
T ss_dssp EEEEEEEEETTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEccccccHHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999888874
No 14
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=92.25 E-value=0.48 Score=30.60 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=36.9
Q ss_pred ceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 248 SQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 248 ~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
...+.+.|+.++..+|.++|+..|+|.+.++--|+...+..
T Consensus 9 ~~~i~vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 9 GIKLGVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999988877765
No 15
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=92.00 E-value=5.8 Score=34.56 Aligned_cols=172 Identities=10% Similarity=0.043 Sum_probs=89.4
Q ss_pred EEEEecCHHHHHHHHHHHHh-------cCCChHHHHHHHHHHHHhcccCCCCC-------CCCceEEEeecccCCcCCCC
Q 011748 250 VLRLQLNRDETGRLVEGCKS-------RGIKLCGALAAAGLIAARSTKYFPSH-------QREKYAVVTLVDCRSILEPV 315 (478)
Q Consensus 250 ~~~~~l~~~~~~~l~~~~r~-------~~vT~~~~l~aa~~~~l~~~~~~~~~-------~~~~~~~~~~v~~R~~~~~~ 315 (478)
.+...++.+...++++..++ .++|++.++.-|.+.++.++-.+... ..+.+-+|+.++.-
T Consensus 31 ~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~~~~~~i~~~~~v~igiAV~~~------ 104 (233)
T 1scz_A 31 TTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP------ 104 (233)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCEEETTEEECCSSCCEEECEEET------
T ss_pred EEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEEEeCCEEEEeCceeEEEEEEcC------
Confidence 34466777677776665554 68999999999999999875422110 01122233333210
Q ss_pred CCCCceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeec
Q 011748 316 LSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFE 395 (478)
Q Consensus 316 ~~~~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 395 (478)
+ |.+ +|+..+. ...+|.++++++++...+..... +. .. ... ..+|.+
T Consensus 105 --~---GL~---vPvi~~a-~~~~l~~i~~~~~~l~~~ar~~k--L~----~~-----e~~-----------ggtftI-- 151 (233)
T 1scz_A 105 --R---GLV---TPVLRDV-DTLGMADIEKKIKELAVKGRDGK--LT----VE-----DLT-----------GGNFTI-- 151 (233)
T ss_dssp --T---EEE---CCEETTG-GGCCHHHHHHHHHHHHHHTTTTC--CC----HH-----HHS-----------CCSEEE--
T ss_pred --C---cEE---EEEEcCC-CCCCHHHHHHHHHHHHHHHHcCC--CC----cc-----ccC-----------CCEEEE--
Confidence 0 222 2332222 35689999999988776654432 11 00 000 012222
Q ss_pred Cccccc----c-----cccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 011748 396 DPIVDE----T-----NKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILV 466 (478)
Q Consensus 396 ~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~ 466 (478)
||.|.. . +.+..-+.+..+...... .+..+. ....|.+++.|+..+.|-+.+.+|+..+...|+
T Consensus 152 SnlG~~G~~~~tpIin~pq~aIl~vG~~~~~pv~--~~g~i~-----~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le 224 (233)
T 1scz_A 152 TNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMA--VNGQVE-----ILPMMYLALSYDHRLIDGRESVGFLVTIKELLE 224 (233)
T ss_dssp EEGGGGTCCCCCCCCCTTCSEEEEEEEEEEEEEE--ETTEEE-----EEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCccceEcccCCCCcEEEEccccEEEEEE--ECCEEE-----EEEEEEEEEEEcceeechHHHHHHHHHHHHHHh
Confidence 333320 0 011111222211100000 000000 012488999999999999999999999998876
Q ss_pred H
Q 011748 467 E 467 (478)
Q Consensus 467 ~ 467 (478)
.
T Consensus 225 ~ 225 (233)
T 1scz_A 225 D 225 (233)
T ss_dssp C
T ss_pred C
Confidence 4
No 16
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=91.99 E-value=5.4 Score=34.90 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=55.1
Q ss_pred EEEecCHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHhcccCCCCC-------CCCceEEEeecccCCcCCCCCCC
Q 011748 251 LRLQLNRDETGRLVEGCKS-----RGIKLCGALAAAGLIAARSTKYFPSH-------QREKYAVVTLVDCRSILEPVLSD 318 (478)
Q Consensus 251 ~~~~l~~~~~~~l~~~~r~-----~~vT~~~~l~aa~~~~l~~~~~~~~~-------~~~~~~~~~~v~~R~~~~~~~~~ 318 (478)
+...++.+...++++..|+ .++|++.++.-|.+.++.++-.+... ..+.+-+|+.++.- +
T Consensus 40 ~~~evDvt~l~~~r~~~k~~~~~~~kls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igvAV~~~--------~ 111 (239)
T 3b8k_A 40 LSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTP--------A 111 (239)
T ss_dssp EEEEECCTTHHHHHHHTHHHHTTSSCCCHHHHHHHHHHHHHHHCCCSCTTSCCCSSSCSCCCCEEECEECS--------S
T ss_pred EEEEEEcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEeCceeEEEEEEcC--------C
Confidence 4466777777777666555 69999999999999999875422110 01223344444320 1
Q ss_pred CceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhcc
Q 011748 319 DYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKN 356 (478)
Q Consensus 319 ~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~ 356 (478)
|.+ +|+..+. ...+|.++++++++...+...
T Consensus 112 ---GL~---vPvi~~a-~~~~l~~i~~~~~~l~~~ar~ 142 (239)
T 3b8k_A 112 ---GLI---TPIVFNA-HIKGVETIANDVVSLATKARE 142 (239)
T ss_dssp ---CEE---CCEECCS-SCCCHHHHHHHHHHHHHHHHT
T ss_pred ---cEE---EEEEcCC-CCCCHHHHHHHHHHHHHHHHc
Confidence 221 3333333 245899999999877766544
No 17
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=90.97 E-value=0.7 Score=31.43 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=37.2
Q ss_pred ceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 248 SQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 248 ~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
...+.++++.++-++|...|+++|.|++..+..++...+.+
T Consensus 19 ~~kf~LRlP~eL~~~L~~~A~~~grSlNaeIv~~Le~sl~~ 59 (69)
T 3qoq_A 19 ADKFVVRLPEGMREQIAEVARSHHRSMNSEIIARLEQSLLQ 59 (69)
T ss_dssp SEEEEEECCTTHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCceEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999888875
No 18
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=90.69 E-value=0.87 Score=28.91 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=32.4
Q ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011748 246 RFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAG 282 (478)
Q Consensus 246 ~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~ 282 (478)
.++..+.+.+++++.+.|.+.|+..|.|+..++-.+.
T Consensus 13 ~r~~~i~vRlt~eE~~~l~~~A~~~g~s~SeyiR~~~ 49 (51)
T 2ba3_A 13 QKTVVRTLRFSPVEDETIRKKAEDSGLTVSAYIRNAA 49 (51)
T ss_dssp CCSEEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred cCceeEEEEECHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3556788999999999999999999999999887654
No 19
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=90.49 E-value=8.1 Score=33.84 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=27.9
Q ss_pred eeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 437 WLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 437 ~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
.|.+++.|+..+.|-+.+.+|+..+...|+.
T Consensus 207 ~m~lsls~DHRviDGa~aa~Fl~~lk~~le~ 237 (243)
T 1dpb_A 207 MLPLSLSYDCRVINGAAAARFTKRLGDLLAD 237 (243)
T ss_dssp EEEEEEEEETTTSCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEECcccccHHHHHHHHHHHHHHHhC
Confidence 3789999999999999999999999988864
No 20
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=90.23 E-value=8.4 Score=33.26 Aligned_cols=169 Identities=12% Similarity=0.173 Sum_probs=88.9
Q ss_pred EEEEecCHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhcccCCCC---CC------CCceEEEeecccCCcCCCCCCC
Q 011748 250 VLRLQLNRDETGRLVEGCKS--RGIKLCGALAAAGLIAARSTKYFPS---HQ------REKYAVVTLVDCRSILEPVLSD 318 (478)
Q Consensus 250 ~~~~~l~~~~~~~l~~~~r~--~~vT~~~~l~aa~~~~l~~~~~~~~---~~------~~~~~~~~~v~~R~~~~~~~~~ 318 (478)
.+...+|.+...++++..|+ .++|++.++.-|.+.++.++-.+.. +. .+.+-+|+.++.- +
T Consensus 33 ~~~~evDvt~l~~~r~~~k~~g~kls~~~~~ikA~~~Al~~~P~~N~~~~~~~~~i~~~~~v~igiAV~~~--------~ 104 (224)
T 3rqc_A 33 TVMEEVDVTSMVSILDSAKARNRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTP--------D 104 (224)
T ss_dssp EEEECCBTHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHSGGGSBBCCSSTTCCCEECSCCEEEEEECS--------S
T ss_pred EEEEEEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHHhheEEeCCCCEEEEeCccceEeEEEcC--------C
Confidence 34567777777777776665 4679999999999999988642211 00 0123334444321 1
Q ss_pred CceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCcc
Q 011748 319 DYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPI 398 (478)
Q Consensus 319 ~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 398 (478)
|.+ +|+. .-....+|.++++++++-........-... .+....|.+ ||.
T Consensus 105 ---GL~---vPvi-~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~----------------------e~~ggtftI--Snl 153 (224)
T 3rqc_A 105 ---GLN---VFVI-KDADRKSMVEISAEISDKASRARENKLQLD----------------------EVQDSTFTI--TNV 153 (224)
T ss_dssp ---CEE---EEEE-SCGGGSCHHHHHHHHHHHHHHHTTTCCCGG----------------------GSCCCSEEE--EEC
T ss_pred ---ceE---EeEE-CCCCCCCHHHHHHHHHHHHHHHHcCCCCcc----------------------ccCCCEEEE--EcC
Confidence 222 2332 222456899999999876665543321110 001122333 444
Q ss_pred cccccccccceEEeeEEEEeecccccCeEEEEE-EEe--cCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 011748 399 VDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFD-TIR--DGWLDCACVYPSPLHSREQLQQLIDDMKKILV 466 (478)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~ 466 (478)
|.. |......+. ..+....+.+.- ... ...|.+++.|+..+.|-+.+.+|++.+...|+
T Consensus 154 G~~-----G~~~~tpii----n~pq~aIl~vG~~~~~p~r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le 215 (224)
T 3rqc_A 154 GTI-----GGIMSTPII----NYPEVAILGVHRILEREGRKYMYLSLSCDHRLIDGAVATRFIVDLKKVIE 215 (224)
T ss_dssp TTT-----CCSEEECCC----CTTBSEEEEECCCEEETTEEECCEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred CcC-----CccceEecc----CCCCceEEEecccEEECCceEEEEEEEeccceecHHHHHHHHHHHHHHHh
Confidence 421 100000000 000000011110 001 12477999999999999999999888876665
No 21
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=90.12 E-value=1 Score=28.90 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=35.2
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 250 VLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 250 ~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
.+.++|++++-++|...|+.+|.|++..+..++..++.+
T Consensus 9 ~~~lRlp~eL~~~l~~~A~~~grS~N~~i~~~L~~~l~~ 47 (53)
T 1baz_A 9 QVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKK 47 (53)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred eeEEECCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 467789999999999999999999999999998888764
No 22
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=88.59 E-value=5.5 Score=35.37 Aligned_cols=31 Identities=6% Similarity=0.055 Sum_probs=28.1
Q ss_pred eeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 437 WLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 437 ~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
.|.+++.|+..+.|-+.+.+|+..+...|+.
T Consensus 223 ~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~ 253 (262)
T 2ii3_A 223 IMNVSWSADHRIIDGATVSRFSNLWKSYLEN 253 (262)
T ss_dssp EEEEEEEEETTTCCHHHHHHHHHHHHHHHHS
T ss_pred eeEEEEEECcceecHHHHHHHHHHHHHHHhC
Confidence 5889999999999999999999999988874
No 23
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=88.04 E-value=12 Score=32.14 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=28.7
Q ss_pred eeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 437 WLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 437 ~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
-|.+++.|+..+.|-+.+.+|+..+...|+.
T Consensus 184 ~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 214 (219)
T 1q23_A 184 LMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_dssp EEEEEEEEETTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEchhhChHHHHHHHHHHHHHHhC
Confidence 3789999999999999999999999999986
No 24
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=88.00 E-value=1.3 Score=27.12 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=34.3
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 250 VLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 250 ~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
.+.+.|+.+..++|.++|++.|.|-+.++-.|+...+..
T Consensus 4 ritv~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~ 42 (45)
T 2cpg_A 4 RLTITLSESVLENLEKMAREMGLSKSAMISVALENYKKG 42 (45)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred eEEEecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999998888776653
No 25
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=87.87 E-value=9.1 Score=32.74 Aligned_cols=31 Identities=6% Similarity=0.128 Sum_probs=28.2
Q ss_pred eeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 437 WLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 437 ~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
-|.+++.|+..+.|-+.+.+|+..+...|+.
T Consensus 180 ~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 210 (213)
T 3cla_A 180 LLPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp EEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred EEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999998875
No 26
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=87.77 E-value=14 Score=32.51 Aligned_cols=31 Identities=13% Similarity=0.397 Sum_probs=28.4
Q ss_pred eeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 437 WLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 437 ~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
-|.+++.|+..++|-+.+.+|+..+...|+.
T Consensus 204 ~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~ 234 (250)
T 3l60_A 204 TMTLTCVFDHRVVDGAQVAQFMCELRDLIES 234 (250)
T ss_dssp EEEEEEEEETTTCCHHHHHHHHHHHHHHHHS
T ss_pred EeEEEEEecccccCHHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999998874
No 27
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=86.03 E-value=1.2 Score=31.06 Aligned_cols=42 Identities=7% Similarity=0.176 Sum_probs=36.4
Q ss_pred cceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 247 FSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 247 ~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
....+.+.|++++-.+|+.+|.+.|+|+..++--++.-+|.+
T Consensus 33 ~~~Rlti~i~~~lh~rlK~~Aa~~g~Smsdvvreli~~~L~~ 74 (76)
T 1p94_A 33 KIKRVNVNFDEEKHTRFKAACARKGTSITDVVNQLVDNWLKE 74 (76)
T ss_dssp CEEECCEEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CceeEEEEcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 445667999999999999999999999999999888777653
No 28
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=85.76 E-value=2.3 Score=27.55 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=35.8
Q ss_pred ceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 248 SQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 248 ~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
...+.+.|++++-.++..+|...|.|++.++--|+.-++.+
T Consensus 13 kg~~~vrId~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~ 53 (56)
T 2kel_A 13 KAVFGIYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred eeeEEEEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34667999999999999999999999999999888776653
No 29
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=85.12 E-value=2.3 Score=26.92 Aligned_cols=40 Identities=8% Similarity=0.008 Sum_probs=36.2
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
..+.+.|+.++.++|.++|+..|.|.+.++--|+...+.+
T Consensus 4 ~~~sirl~~~l~~~l~~lA~~~~rs~s~lir~Ai~~yl~~ 43 (52)
T 2gpe_A 4 TTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQ 43 (52)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEECCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4577999999999999999999999999999988887765
No 30
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=82.63 E-value=4.3 Score=26.52 Aligned_cols=40 Identities=8% Similarity=-0.013 Sum_probs=36.6
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
..+.+.|+.++-++|.++|++.|.|.+.++--|+...+.+
T Consensus 4 ~~~svrL~~el~~rL~~lA~~~~rs~s~lireAi~~yl~~ 43 (58)
T 2ay0_A 4 TTMGVMLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQ 43 (58)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cceEeECCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999998888876
No 31
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=81.17 E-value=1.7 Score=29.05 Aligned_cols=38 Identities=5% Similarity=-0.002 Sum_probs=34.2
Q ss_pred EEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 011748 252 RLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARST 289 (478)
Q Consensus 252 ~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~ 289 (478)
.++|++++-++|...|++.|.|++..+..++.-++...
T Consensus 11 ~lRlp~eLh~~l~~~A~~~GrSlN~~Iv~~L~~~l~~~ 48 (64)
T 1nla_A 11 LNRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKE 48 (64)
T ss_dssp GGSSCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred EeeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 36799999999999999999999999999998887653
No 32
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=79.69 E-value=4.7 Score=30.61 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=36.3
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
..+.++|++++-++|...|++.|.|++..+..++..++..
T Consensus 19 ~kf~LRLP~eLh~~La~~Ak~eGrSLN~eIv~~Le~sl~~ 58 (120)
T 1u9p_A 19 PQFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKK 58 (120)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CeeEEeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 3567899999999999999999999999999999888765
No 33
>1mnt_A MNT repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=74.48 E-value=4.6 Score=28.10 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=34.4
Q ss_pred EEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 251 LRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 251 ~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
+.++|++++-.+|...|+.+|.|++..+..++.-++.+
T Consensus 7 f~lRi~~eLh~~L~~~A~~~grSlN~~I~~~L~~al~~ 44 (76)
T 1mnt_A 7 FNFRMPMEVREKLKFRAEANGRSMNSELLQIVQDALSK 44 (76)
T ss_dssp CEEECCHHHHHHHHHTHHHHTSCTHHHHHHHHHHHHHC
T ss_pred eeeeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 45779999999999999999999999999998888764
No 34
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=74.16 E-value=41 Score=28.72 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=26.2
Q ss_pred eeEEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 011748 437 WLDCACVYPSPLHSREQLQQLIDDMKKIL 465 (478)
Q Consensus 437 ~l~l~~~y~~~~~~~~~i~~~~~~~~~~L 465 (478)
.|.+++.|+..+.|-+.+.+|+..+...|
T Consensus 188 ~m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 188 VMPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp EEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 47789999999999999999999998776
No 35
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=72.15 E-value=6.4 Score=27.19 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=29.5
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHH
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAA 281 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa 281 (478)
..+++.|+.+.-.+|+.+|+..|+|++-++.-.
T Consensus 2 SrLTIrLpd~qH~rLKalAa~qG~SInqli~E~ 34 (83)
T 2an7_A 2 SRLTIDMTDQQHQSLKALAALQGKTIKQYALER 34 (83)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ceeeEeCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 357899999999999999999999999998664
No 36
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=71.60 E-value=9 Score=26.87 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=35.9
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 249 ~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
..+.+.|+.++.++|.++|+..|.|.+.++--|+...+.+
T Consensus 10 ~risI~Lpdel~~~Ld~la~~~g~srselireAi~~yl~~ 49 (80)
T 2k5j_A 10 GRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLIN 49 (80)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999888877765
No 37
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=68.88 E-value=3 Score=35.96 Aligned_cols=30 Identities=17% Similarity=0.383 Sum_probs=27.2
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
..+.+++||-++||.-+..|+++|.+....
T Consensus 185 m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 214 (219)
T 1q23_A 185 MPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEchhhChHHHHHHHHHHHHHHhC
Confidence 678999999999999999999999888754
No 38
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=68.18 E-value=3.5 Score=35.36 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=26.9
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
..+.+++||-++||.-+..|+++|.+....
T Consensus 181 m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 210 (213)
T 3cla_A 181 LPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred EEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999887743
No 39
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=65.21 E-value=4.1 Score=35.04 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=25.2
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHh
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLM 182 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y 182 (478)
..+.+++||-++||.-+..|+++|.+..
T Consensus 189 m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 189 MPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 6789999999999999999999997754
No 40
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=60.98 E-value=6.3 Score=34.07 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=27.3
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
..+.+++||-++||.-+..|+++|.+.+..
T Consensus 187 m~lsls~DHRviDGa~aa~Fl~~l~~~le~ 216 (224)
T 3rqc_A 187 MYLSLSCDHRLIDGAVATRFIVDLKKVIED 216 (224)
T ss_dssp CCEEEEEETTTSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeccceecHHHHHHHHHHHHHHHhC
Confidence 558899999999999999999999999865
No 41
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=60.77 E-value=18 Score=25.09 Aligned_cols=36 Identities=8% Similarity=-0.019 Sum_probs=31.5
Q ss_pred EecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 011748 253 LQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARS 288 (478)
Q Consensus 253 ~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~ 288 (478)
..|+.+...+|+..|+++|.|++..+..+...++..
T Consensus 6 Rnlpd~~~~~Lk~rAa~~GrSle~e~r~iL~~a~~~ 41 (77)
T 2bsq_E 6 RNLSEATHNAIKFRARAAGRSTEAEIRLILDNIAKA 41 (77)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 459999999999999999999999988887777653
No 42
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=60.19 E-value=5.7 Score=34.75 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=27.5
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
..+.+++||-++||.-+..|+++|.+....
T Consensus 204 m~lsls~DHRviDGa~aa~Fl~~lk~~le~ 233 (239)
T 3b8k_A 204 MSVTLSCDHRVVDGAVGAQWLAEFRKYLEK 233 (239)
T ss_dssp EEEEECCCCCSSCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHhC
Confidence 679999999999999999999999988754
No 43
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=59.23 E-value=6.3 Score=34.29 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=27.3
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
..+.+++||-++||.-+..|+++|.+....
T Consensus 196 m~lsls~DHRviDGa~aa~Fl~~lk~~le~ 225 (233)
T 1scz_A 196 MYLALSYDHRLIDGRESVGFLVTIKELLED 225 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHhC
Confidence 568999999999999999999999988764
No 44
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=59.12 E-value=6.2 Score=34.61 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=27.4
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
..+.+++||-++||.-+..|+++|.+.+..
T Consensus 208 m~lsls~DHRviDGa~aa~Fl~~lk~~le~ 237 (243)
T 1dpb_A 208 LPLSLSYDCRVINGAAAARFTKRLGDLLAD 237 (243)
T ss_dssp EEEEEEEETTTSCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECcccccHHHHHHHHHHHHHHHhC
Confidence 579999999999999999999999988764
No 45
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=55.89 E-value=7.7 Score=34.41 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=27.3
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
..+.+++||-++||.-+..|+++|.+.+..
T Consensus 224 m~lsls~DHRviDGa~aa~Fl~~lk~~Le~ 253 (262)
T 2ii3_A 224 MNVSWSADHRIIDGATVSRFSNLWKSYLEN 253 (262)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEECcceecHHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999988754
No 46
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=51.21 E-value=1.5e+02 Score=32.36 Aligned_cols=32 Identities=6% Similarity=0.271 Sum_probs=28.3
Q ss_pred CeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q 011748 436 GWLDCACVYPSPLHSREQLQQLIDDMKKILVE 467 (478)
Q Consensus 436 g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~ 467 (478)
..|.+++.|+..++|-+.+.+|+..+...|+.
T Consensus 190 ~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~ 221 (1113)
T 2xt6_A 190 KLITLTSTYDHRIIQGAESGDFLRTIHQLLLD 221 (1113)
T ss_dssp CEEEEEEEEETTTCCHHHHHHHHHHHHHHTTC
T ss_pred eeeEEEEEECcceechHHHHHHHHHHHHHHhC
Confidence 35889999999999999999999999887764
No 47
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=48.67 E-value=29 Score=23.71 Aligned_cols=34 Identities=12% Similarity=-0.038 Sum_probs=29.9
Q ss_pred EecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011748 253 LQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAA 286 (478)
Q Consensus 253 ~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l 286 (478)
..++.+...+|+..++++|.|...++...+-.+.
T Consensus 7 Rnvpdev~~~L~~rAa~~G~S~~~ylr~~Le~~a 40 (73)
T 3h87_C 7 RDIPDDVLASLDAIAARLGLSRTEYIRRRLAQDA 40 (73)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 5689999999999999999999999988775544
No 48
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=47.16 E-value=13 Score=32.80 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=28.2
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcCc
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTGR 185 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~ 185 (478)
..+.+++||-++||.-+..|+++|.+.+...
T Consensus 210 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P 240 (256)
T 3mae_A 210 VNLCLSIDHRILDGLLAGKFLQAIKANVEKI 240 (256)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEccccccHHHHHHHHHHHHHHHhCh
Confidence 4689999999999999999999999998754
No 49
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=44.88 E-value=13 Score=32.65 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=27.4
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
..+.+++||-++||.-+..|+++|.+.+..
T Consensus 205 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~ 234 (250)
T 3l60_A 205 MTLTCVFDHRVVDGAQVAQFMCELRDLIES 234 (250)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHhC
Confidence 468899999999999999999999999865
No 50
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=39.53 E-value=77 Score=22.00 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=31.8
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011748 250 VLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAAR 287 (478)
Q Consensus 250 ~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~ 287 (478)
.+.++++.++-++..+.|++.|+|++.++-.-+-....
T Consensus 3 ~i~~RiD~~lK~~a~~v~~~lGl~~s~Ai~~fl~~v~~ 40 (79)
T 4fxe_A 3 SINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIAD 40 (79)
T ss_dssp EEEEECCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred eEEEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999988776555443
No 51
>1y9b_A Conserved hypothetical protein; MCSG, structural genomics, conserved hypoth protein, PSI, protein structure initiative; 2.20A {Vibrio cholerae o1 biovar eltor} SCOP: a.43.1.9
Probab=39.35 E-value=59 Score=23.21 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=33.1
Q ss_pred ceEEEEecCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHh
Q 011748 248 SQVLRLQLNRDETGRLVEGCKSRG-IKLCGALAAAGLIAAR 287 (478)
Q Consensus 248 ~~~~~~~l~~~~~~~l~~~~r~~~-vT~~~~l~aa~~~~l~ 287 (478)
+..+.++++++.-..|.+++...| .|++.++..+..-...
T Consensus 5 ~~ri~~R~~~e~k~lI~~AA~~~G~~s~s~Fv~~aa~~~A~ 45 (90)
T 1y9b_A 5 LPRITARVDVDTQDLLAKAAALAGMSSINSFVLNAAIEKAK 45 (90)
T ss_dssp SCCEEEECCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccceeeeCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 345688999999999999999999 5999999887655443
No 52
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=37.07 E-value=31 Score=24.95 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=30.4
Q ss_pred EecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011748 253 LQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAAR 287 (478)
Q Consensus 253 ~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~ 287 (478)
+.++.+....|+..|++.|+|+.+++-=.+.-+|.
T Consensus 3 IvIEeslY~~LkelAe~EGvSvSav~RkLL~EyL~ 37 (106)
T 4hv0_A 3 VTVEEEVYEFLKKKAKEEGTSVPAVIRKILKEYFG 37 (106)
T ss_dssp EEEEHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred EEeeHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 56889999999999999999999998777766665
No 53
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=34.35 E-value=47 Score=17.32 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 011748 447 PLHSREQLQQLIDDMKKILV 466 (478)
Q Consensus 447 ~~~~~~~i~~~~~~~~~~L~ 466 (478)
..|++.+|+.+++..+....
T Consensus 7 trfdekqieelldncietfv 26 (31)
T 4h62_V 7 TRFDEKQIEELLDNCIETFV 26 (31)
T ss_dssp ---CHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 45899999999998876543
No 54
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=27.60 E-value=13 Score=35.69 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=0.0
Q ss_pred eEEEEEecceecchhhHHHHHHHHHHHhcC
Q 011748 155 WVVTLRLHTSICDRASAAAVSKELLRLMTG 184 (478)
Q Consensus 155 ~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~ 184 (478)
..|.+++||-++||.-+..|+++|.+.+..
T Consensus 391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le~ 420 (428)
T 3dva_I 391 LALSLSFDHRMIDGATAQKALNHIKRLLSD 420 (428)
T ss_dssp ------------------------------
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999888754
No 55
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=25.88 E-value=1.5e+02 Score=22.77 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=34.9
Q ss_pred EEEEecCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHhcc
Q 011748 250 VLRLQLNRDETGRLVEGCKSRG-IKLCGALAAAGLIAARST 289 (478)
Q Consensus 250 ~~~~~l~~~~~~~l~~~~r~~~-vT~~~~l~aa~~~~l~~~ 289 (478)
.+.++|+.++.++|.++|++.| .|-+.++-.|.-..+.+.
T Consensus 3 risVsLp~~ll~~lD~~v~~~~y~sRSe~Ir~air~~l~~~ 43 (133)
T 2hza_A 3 RVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQE 43 (133)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999 899999998887777653
No 56
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=21.03 E-value=1.6e+02 Score=23.15 Aligned_cols=41 Identities=7% Similarity=-0.084 Sum_probs=36.1
Q ss_pred ceEEEEecCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHhc
Q 011748 248 SQVLRLQLNRDETGRLVEGCKSRG-IKLCGALAAAGLIAARS 288 (478)
Q Consensus 248 ~~~~~~~l~~~~~~~l~~~~r~~~-vT~~~~l~aa~~~~l~~ 288 (478)
...+.++|+.++.+.|.++|++.| .|-+.++-.|.-..+.+
T Consensus 10 ~~risVsLp~~ll~~lD~~v~~~~y~sRSe~Ir~Air~~l~~ 51 (148)
T 2wvf_A 10 IIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVE 51 (148)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHC
T ss_pred cEEEEEEeCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 356789999999999999999999 89999999888777775
Done!