BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011749
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 92/393 (23%), Positives = 150/393 (38%), Gaps = 84/393 (21%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
+Y + + P +V+D G W+ DC Q SS+Y P+ C T
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLWV------DCDQNY-------VSSTYRPVRCRTS 67
Query: 209 QCQSLDES------------ECRNNTC--------LYEVSYGDGSYTTVTL----GSAS- 243
QC SL S C NNTC + + G+ + V++ GS+S
Sbjct: 68 QC-SLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSG 126
Query: 244 ----VDNIAIGCGHNN--EGLFVXXXXXXXXXXXXXSFPSQINASTFSY------CLVDR 291
V C + + L + PSQ AS FS+ CL
Sbjct: 127 RVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQF-ASAFSFKRKFAMCL-SG 184
Query: 292 DSDSTSTLEFDS---SLPPNAVTA-------PLLRN----------HELDTFYYLGLTGI 331
+ S S + F + + PN + + PLL N E Y++G+ I
Sbjct: 185 STSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSI 244
Query: 332 SVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR--GTRALSPTD 389
+ ++ ++ + I +G GG + + T L+T Y A+ +AF++ R ++
Sbjct: 245 KINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVA 304
Query: 390 GVALFDTCYD----FSSRSSVEVPTVSFHF-PEGKVLPLPAKNFLIPVDSNGTFCFAFAP 444
VA F C+ S+R VP++ E V + N ++ ++ N C
Sbjct: 305 SVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN-VVCLGVVD 363
Query: 445 TSSSLS---IIGNVQQQGTRVSFNLRNSLVGFT 474
S+L +IG Q + V F+L S VGF+
Sbjct: 364 GGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 92/393 (23%), Positives = 150/393 (38%), Gaps = 84/393 (21%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
+Y + + P +V+D G W+ DC Q SS+Y P+ C T
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLWV------DCDQNY-------VSSTYRPVRCRTS 67
Query: 209 QCQSLDES------------ECRNNTC--------LYEVSYGDGSYTTVTL----GSAS- 243
QC SL S C NNTC + + G+ + V++ GS+S
Sbjct: 68 QC-SLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSG 126
Query: 244 ----VDNIAIGCGHNN--EGLFVXXXXXXXXXXXXXSFPSQINASTFSY------CLVDR 291
V C + + L + PSQ AS FS+ CL
Sbjct: 127 RVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQF-ASAFSFKRKFAMCL-SG 184
Query: 292 DSDSTSTLEFDS---SLPPNAVTA-------PLLRN----------HELDTFYYLGLTGI 331
+ S S + F + + PN + + PLL N E Y++G+ I
Sbjct: 185 STSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSI 244
Query: 332 SVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR--GTRALSPTD 389
+ ++ ++ + I +G GG + + T L+T Y A+ +AF++ R ++
Sbjct: 245 KINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVA 304
Query: 390 GVALFDTCYD----FSSRSSVEVPTVSFHF-PEGKVLPLPAKNFLIPVDSNGTFCFAFAP 444
VA F C+ S+R VP++ E V + N ++ ++ N C
Sbjct: 305 SVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN-VVCLGVVD 363
Query: 445 TSSSLS---IIGNVQQQGTRVSFNLRNSLVGFT 474
S+L +IG Q + V F+L S VGF+
Sbjct: 364 GGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 115 GIATSDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVN 174
G++ + +PL SG+ E +G IV+ + + +YF +G+G PP + ++ DTGS
Sbjct: 19 GLSGGEEQPLLSGANPLRSEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNL 78
Query: 175 WLQCAPCADCY 185
W+ P A CY
Sbjct: 79 WV---PSAKCY 86
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 28/171 (16%)
Query: 324 YYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTR 383
+Y+ I V +PISE A GG+++ + L+ + Y L DAF +
Sbjct: 208 HYISARSIKVENTRVPISERALA-----TGGVMLSTRLPYVLLRRDVYRPLVDAFTKALA 262
Query: 384 ALSPTDG---------VALFDTCYDFSSRSS----VEVPTVSFHFPEGKVLPLPAKNFLI 430
A P +G VA F+ CYD + + VP V G + KN ++
Sbjct: 263 A-QPANGAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELDGGSDWAMTGKNSMV 321
Query: 431 PVDSNGTFCFAFAPT--------SSSLSIIGNVQQQGTRVSFNLRNSLVGF 473
V GT C AF S+ I+G Q + + F++ +GF
Sbjct: 322 DVKP-GTACVAFVEMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGF 371
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 26/171 (15%)
Query: 324 YYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR--- 380
+Y+ I VG +P+ E A GG+++ + L+ + Y L DAF +
Sbjct: 206 HYISARSIVVGDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALA 260
Query: 381 -----GTRALSPTDGVALFDTCYDFSSRSS----VEVPTVSFHFPEGKVLPLPAKNFLIP 431
G + VA F CYD + + VP V G + KN ++
Sbjct: 261 AQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVD 320
Query: 432 VDSNGTFCFAFAPTSSSLS--------IIGNVQQQGTRVSFNLRNSLVGFT 474
V GT C AF + I+G Q + + F++ +GF+
Sbjct: 321 VK-QGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 23/102 (22%)
Query: 150 YFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQ-QADPIFEPTSSSSYSPLTCNTK 208
YF +GIG PP + ++ DTGS V W+ + C + +A ++E + SS+Y
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTY-------- 66
Query: 209 QCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIG 250
+ N + YG GS T G S D++ IG
Sbjct: 67 ----------KENGTFGAIIYGTGSIT----GFFSQDSVTIG 94
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 25/100 (25%)
Query: 150 YFSRVGIGKPPSQVYMVLDTGSDVNWL-----QCAPCADCYQQADPIFEPTSSSSYSPLT 204
Y S+V +G Q +++DTGS W+ QC DC ++ F P+SSSSY
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSY---- 67
Query: 205 CNTKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASV 244
+N + + YGDGS + T G +V
Sbjct: 68 --------------KNLGAAFTIRYGDGSTSQGTWGKDTV 93
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/356 (23%), Positives = 131/356 (36%), Gaps = 76/356 (21%)
Query: 150 YFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQ 209
YF + IG PP ++ DTGS W+ C + F P+ SS+YS
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYS-------- 65
Query: 210 CQSLDESECRNNTCLYEVSYGDGS------YTTVTLGSASVDNIAIGCGHNNEGL-FVXX 262
N + + YG GS Y T+T+ S V N G N G FV
Sbjct: 66 ----------TNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYA 115
Query: 263 XXXXXXXXXXXSF--------------PSQINASTFSYCLVDRDSDSTSTLEF---DSSL 305
+ + + FS L ++ S + F DSSL
Sbjct: 116 QFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSL 175
Query: 306 PPNAV-TAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVT 364
+ AP+ + + ++ +G+ +GG + IVD+GT++
Sbjct: 176 YTGQIYWAPVTQ----ELYWQIGIEEFLIGGQASGWCSEGCQ--------AIVDTGTSLL 223
Query: 365 RLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLP 424
+ + +AL A T A G L + S +P+++F G PLP
Sbjct: 224 TVPQQYMSALLQA----TGAQEDEYGQFLVNC------NSIQNLPSLTFII-NGVEFPLP 272
Query: 425 AKNFLIPVDSNGTFC-FAFAPTSSS------LSIIGNVQQQGTRVSFNLRNSLVGF 473
++++ SN +C PT S L I+G+V + ++L N+ VGF
Sbjct: 273 PSSYIL---SNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGF 325
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQA--DPIFEPTSSSSY 200
+Y+ +GIG PP +V DTGS W+ + C+ Y +F+ + SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQA--DPIFEPTSSSSY 200
+Y+ +GIG PP +V DTGS W+ + C+ Y +F+ + SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQA--DPIFEPTSSSSYS 201
+Y+ +GIG PP +V DTGS W+ + C+ Y +F+ + SSSY
Sbjct: 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK 116
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQA--DPIFEPTSSSSY 200
+Y+ +GIG PP +V DTGS W+ + C+ Y +F+ + SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQA--DPIFEPTSSSSYS 201
+Y+ +GIG PP +V DTGS W+ + C+ Y +F+ + SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK 73
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQA--DPIFEPTSSSSY 200
+Y+ +GIG PP +V DTGS W+ + C+ Y +F+ + SSSY
Sbjct: 16 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 69
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQA--DPIFEPTSSSSY 200
+Y+ +GIG PP +V DTGS W+ + C+ Y +F+ + SSSY
Sbjct: 15 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 68
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQA--DPIFEPTSSSSY 200
+Y+ +GIG PP +V DTGS W+ + C+ Y +F+ + SSSY
Sbjct: 12 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 65
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 321 DTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR 380
+ +Y + + + +GG L + + D++ IVDSGT + RL + ++A+ +A R
Sbjct: 194 EWYYQIEILKLEIGGQSLNLDCREYNADKA-----IVDSGTTLLRLPQKVFDAVVEAVAR 248
Query: 381 GTRALSPTDGVALFD--TCYDFSSRSSVEVPTVSFHFPEG------KVLPLPAKNFLIPV 432
+ +DG C+ S P +S + + ++ LP + ++ P+
Sbjct: 249 ASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILP-QLYIQPM 307
Query: 433 DSNGT----FCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478
G + F +P++++L +IG +G V F+ VGF + C
Sbjct: 308 MGAGLNYECYRFGISPSTNAL-VIGATVMEGFYVIFDRAQKRVGFAASPC 356
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 26/171 (15%)
Query: 324 YYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR--- 380
+Y+ I VG +P+ E A GG+++ + L+ + Y L DAF +
Sbjct: 206 HYISARSIVVGDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALA 260
Query: 381 -----GTRALSPTDGVALFDTCYDFSSRSS----VEVPTVSFHFPEGKVLPLPAKNFLIP 431
G VA F CYD + + VP V G + KN ++
Sbjct: 261 AQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVD 320
Query: 432 VDSNGTFCFAFAPTSSSLS--------IIGNVQQQGTRVSFNLRNSLVGFT 474
V GT C AF + I+G Q + + F++ +GF+
Sbjct: 321 VK-QGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 22/102 (21%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
EY+ +V IG P + + DTGS W+ C +C + ++P SS+Y
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTK-YDPNQSSTY-------- 66
Query: 209 QCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIG 250
+++ R + +SYGDGS + G + DN+ +G
Sbjct: 67 ------QADGRT----WSISYGDGSSAS---GILAKDNVNLG 95
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
EY+ +V IG P + + DTGS W+ C +C ++P SS+Y
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSGQTKYDPNQSSTY-------- 66
Query: 209 QCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIG 250
+++ R + +SYGDGS + G + DN+ +G
Sbjct: 67 ------QADGRT----WSISYGDGSSAS---GILAKDNVNLG 95
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 83/402 (20%), Positives = 153/402 (38%), Gaps = 54/402 (13%)
Query: 111 LAIRGIATSDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTG 170
L +R +D +P + G + E+ + S QG Y+ + +G PP + +++DTG
Sbjct: 41 LGLRLPRETDEEPEEPGKKGSFVEMVDNLRGKSGQG---YYVEMTVGSPPQTLNILVDTG 97
Query: 171 SDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYG 230
S + AP ++ ++ SS+Y L + + E T L + +G
Sbjct: 98 SSNFAVGAAPHPFLHR----YYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHG 153
Query: 231 DGSYTTVTLGSASVDNIAIGCGHNNEGLFVXXXXXXXXXXXXXS--FPSQI------NAS 282
+ + + + G N EG+ F S + N
Sbjct: 154 PNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 213
Query: 283 TFSYCLVDRDSDSTSTLE----------FDSSLPPNAVTAPLLRNHELDTFYYLGLTGIS 332
+ C + + L D SL ++ +R + +Y + + +
Sbjct: 214 SLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR---EWYYEVIIVRVE 270
Query: 333 VGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPT---- 388
+ G L + + D+S IVDSGT RL + + +A V+ +A S T
Sbjct: 271 INGQDLKMDCKEYNYDKS-----IVDSGTTNLRLPKKVF----EAAVKSIKAASSTEKFP 321
Query: 389 DGVALFD--TCYDFSSRSSVEVPTVSFHFPEGKV------LPLPAKNFLIPVDSNGTF-- 438
DG L + C+ + P +S + G+V + + + +L PV+ T
Sbjct: 322 DGFWLGEQLVCWQAGTTPWNIFPVISLYL-MGEVTNQSFRITILPQQYLRPVEDVATSQD 380
Query: 439 -CFAFAPTSSSL-SIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478
C+ FA + SS +++G V +G V F+ +GF + C
Sbjct: 381 DCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYS 201
EYF + IG PP ++ DTGS W+ C + F+P+ SS+YS
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYS 76
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 83/402 (20%), Positives = 152/402 (37%), Gaps = 54/402 (13%)
Query: 111 LAIRGIATSDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTG 170
L +R +D +P + G E+ + S QG Y+ + +G PP + +++DTG
Sbjct: 41 LGLRLPRETDEEPEEPGRRGSFVEMVDNLRGKSGQG---YYVEMTVGSPPQTLNILVDTG 97
Query: 171 SDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYG 230
S + AP ++ ++ SS+Y L + + E T L + +G
Sbjct: 98 SSNFAVGAAPHPFLHR----YYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHG 153
Query: 231 DGSYTTVTLGSASVDNIAIGCGHNNEGLFVXXXXXXXXXXXXXS--FPSQI------NAS 282
+ + + + G N EG+ F S + N
Sbjct: 154 PNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 213
Query: 283 TFSYCLVDRDSDSTSTLE----------FDSSLPPNAVTAPLLRNHELDTFYYLGLTGIS 332
+ C + + L D SL ++ +R + +Y + + +
Sbjct: 214 SLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR---EWYYEVIIVRVE 270
Query: 333 VGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPT---- 388
+ G L + + D+S IVDSGT RL + + +A V+ +A S T
Sbjct: 271 INGQDLKMDCKEYNYDKS-----IVDSGTTNLRLPKKVF----EAAVKSIKAASSTEKFP 321
Query: 389 DGVALFD--TCYDFSSRSSVEVPTVSFHFPEGKV------LPLPAKNFLIPVDSNGTF-- 438
DG L + C+ + P +S + G+V + + + +L PV+ T
Sbjct: 322 DGFWLGEQLVCWQAGTTPWNIFPVISLYL-MGEVTNQSFRITILPQQYLRPVEDVATSQD 380
Query: 439 -CFAFAPTSSSL-SIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478
C+ FA + SS +++G V +G V F+ +GF + C
Sbjct: 381 DCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 83/402 (20%), Positives = 152/402 (37%), Gaps = 54/402 (13%)
Query: 111 LAIRGIATSDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTG 170
L +R +D +P + G E+ + S QG Y+ + +G PP + +++DTG
Sbjct: 40 LGLRLPRETDEEPEEPGRRGSFVEMVDNLRGKSGQG---YYVEMTVGSPPQTLNILVDTG 96
Query: 171 SDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYG 230
S + AP ++ ++ SS+Y L + + E T L + +G
Sbjct: 97 SSNFAVGAAPHPFLHR----YYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHG 152
Query: 231 DGSYTTVTLGSASVDNIAIGCGHNNEGLFVXXXXXXXXXXXXXS--FPSQI------NAS 282
+ + + + G N EG+ F S + N
Sbjct: 153 PNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLF 212
Query: 283 TFSYCLVDRDSDSTSTLE----------FDSSLPPNAVTAPLLRNHELDTFYYLGLTGIS 332
+ C + + L D SL ++ +R + +Y + + +
Sbjct: 213 SLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR---EWYYEVIIVRVE 269
Query: 333 VGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPT---- 388
+ G L + + D+S IVDSGT RL + + +A V+ +A S T
Sbjct: 270 INGQDLKMDCKEYNYDKS-----IVDSGTTNLRLPKKVF----EAAVKSIKAASSTEKFP 320
Query: 389 DGVALFD--TCYDFSSRSSVEVPTVSFHFPEGKV------LPLPAKNFLIPVDSNGTF-- 438
DG L + C+ + P +S + G+V + + + +L PV+ T
Sbjct: 321 DGFWLGEQLVCWQAGTTPWNIFPVISLYL-MGEVTNQSFRITILPQQYLRPVEDVATSQD 379
Query: 439 -CFAFAPTSSSL-SIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478
C+ FA + SS +++G V +G V F+ +GF + C
Sbjct: 380 DCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 421
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 24/118 (20%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
EYF +GIG P +V DTGS W+ C+ F P SS+Y
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY-------- 64
Query: 209 QCQSLDESECRNNTCLYEVSYGDGS------YTTVTLGSASVDNIAIGCGHNNEGLFV 260
QS E+ ++YG GS Y TV +G S N G G F+
Sbjct: 65 --QSTSET--------VSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 24/118 (20%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
EYF +GIG P +V DTGS W+ C+ F P SS+Y
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY-------- 64
Query: 209 QCQSLDESECRNNTCLYEVSYGDGS------YTTVTLGSASVDNIAIGCGHNNEGLFV 260
QS E+ ++YG GS Y TV +G S N G G F+
Sbjct: 65 --QSTSET--------VSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 81/394 (20%), Positives = 150/394 (38%), Gaps = 54/394 (13%)
Query: 119 SDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQC 178
+D +P + G + E+ + S QG Y+ + +G PP + +++DTGS +
Sbjct: 5 TDEEPEEPGKKGSFVEMVDNLRGKSGQG---YYVEMTVGSPPQTLNILVDTGSSNFAVGA 61
Query: 179 APCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGDGSYTTVT 238
AP ++ ++ SS+Y L + + E T L + +G
Sbjct: 62 APHPFLHR----YYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRAN 117
Query: 239 LGSASVDNIAIGCGHNNEGLFVXXXXXXXXXXXXXS--FPSQI------NASTFSYCLVD 290
+ + + + G N EG+ F S + N + C
Sbjct: 118 IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAG 177
Query: 291 RDSDSTSTLE----------FDSSLPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPI 340
+ + L D SL ++ +R + +Y + + + + G L +
Sbjct: 178 FPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR---EWYYEVIIVRVEINGQDLKM 234
Query: 341 SETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPT----DGVALFD- 395
+ D+S IVDSGT RL + + +A V+ +A S T DG L +
Sbjct: 235 DCKEYNYDKS-----IVDSGTTNLRLPKKVF----EAAVKSIKAASSTEKFPDGFWLGEQ 285
Query: 396 -TCYDFSSRSSVEVPTVSFHFPEGKV------LPLPAKNFLIPVDSNGTF---CFAFAPT 445
C+ + P +S + G+V + + + +L PV+ T C+ FA +
Sbjct: 286 LVCWQAGTTPWNIFPVISLYL-MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS 344
Query: 446 SSSL-SIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478
SS +++G V +G V F+ +GF + C
Sbjct: 345 QSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 81/394 (20%), Positives = 150/394 (38%), Gaps = 54/394 (13%)
Query: 119 SDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQC 178
+D +P + G + E+ + S QG Y+ + +G PP + +++DTGS +
Sbjct: 5 TDEEPEEPGKKGSFVEMVDNLRGKSGQG---YYVEMTVGSPPQTLNILVDTGSSNFAVGA 61
Query: 179 APCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGDGSYTTVT 238
AP ++ ++ SS+Y L + + E T L + +G
Sbjct: 62 APHPFLHR----YYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRAN 117
Query: 239 LGSASVDNIAIGCGHNNEGLFVXXXXXXXXXXXXXS--FPSQI------NASTFSYCLVD 290
+ + + + G N EG+ F S + N + C
Sbjct: 118 IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAG 177
Query: 291 RDSDSTSTLE----------FDSSLPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPI 340
+ + L D SL ++ +R + +Y + + + + G L +
Sbjct: 178 FPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR---EWYYEVIIVRVEINGQDLKM 234
Query: 341 SETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPT----DGVALFD- 395
+ D+S IVDSGT RL + + +A V+ +A S T DG L +
Sbjct: 235 DCKEYNYDKS-----IVDSGTTNLRLPKKVF----EAAVKSIKAASSTEKFPDGFWLGEQ 285
Query: 396 -TCYDFSSRSSVEVPTVSFHFPEGKV------LPLPAKNFLIPVDSNGTF---CFAFAPT 445
C+ + P +S + G+V + + + +L PV+ T C+ FA +
Sbjct: 286 LVCWQAGTTPWNIFPVISLYL-MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS 344
Query: 446 SSSL-SIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478
SS +++G V +G V F+ +GF + C
Sbjct: 345 QSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 81/394 (20%), Positives = 150/394 (38%), Gaps = 54/394 (13%)
Query: 119 SDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQC 178
+D +P + G + E+ + S QG Y+ + +G PP + +++DTGS +
Sbjct: 3 TDEEPEEPGKKGSFVEMVDNLRGKSGQG---YYVEMTVGSPPQTLNILVDTGSSNFAVGA 59
Query: 179 APCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGDGSYTTVT 238
AP ++ ++ SS+Y L + + E T L + +G
Sbjct: 60 APHPFLHR----YYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRAN 115
Query: 239 LGSASVDNIAIGCGHNNEGLFVXXXXXXXXXXXXXS--FPSQI------NASTFSYCLVD 290
+ + + + G N EG+ F S + N + C
Sbjct: 116 IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAG 175
Query: 291 RDSDSTSTLE----------FDSSLPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPI 340
+ + L D SL ++ +R + +Y + + + + G L +
Sbjct: 176 FPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR---EWYYEVIIVRVEINGQDLKM 232
Query: 341 SETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPT----DGVALFD- 395
+ D+S IVDSGT RL + + +A V+ +A S T DG L +
Sbjct: 233 DCKEYNYDKS-----IVDSGTTNLRLPKKVF----EAAVKSIKAASSTEKFPDGFWLGEQ 283
Query: 396 -TCYDFSSRSSVEVPTVSFHFPEGKV------LPLPAKNFLIPVDSNGTF---CFAFAPT 445
C+ + P +S + G+V + + + +L PV+ T C+ FA +
Sbjct: 284 LVCWQAGTTPWNIFPVISLYL-MGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS 342
Query: 446 SSSL-SIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478
SS +++G V +G V F+ +GF + C
Sbjct: 343 QSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 376
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPL 203
+YF ++ IG PP + +V DTGS W+ C + F+P SS++ L
Sbjct: 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNL 66
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSY 200
EY+ + IG PP ++ DTGS W+ + C+ F+P SS+Y
Sbjct: 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTY 64
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 24/118 (20%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
EYF +GIG P ++ DTGS W+ C+ F P SS++ +
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS---- 112
Query: 209 QCQSLDESECRNNTCLYEVSYGDGS------YTTVTLGSASVDNIAIGCGHNNEGLFV 260
Q L ++YG GS Y TV +G S N G G F+
Sbjct: 113 --QEL------------SITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFL 156
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCY 185
+Y+ +GIG PP ++ DTGS W+ C+ Y
Sbjct: 16 QYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLY 52
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 24/118 (20%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
EYF +GIG P ++ DTGS W+ C+ F P SS++
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------A 110
Query: 209 QCQSLDESECRNNTCLYEVSYGDGS------YTTVTLGSASVDNIAIGCGHNNEGLFV 260
Q L ++YG GS Y TV +G S N G G F+
Sbjct: 111 TXQEL------------SITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFL 156
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 24/118 (20%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
EYF +GIG P ++ DTGS W+ C+ F P SS++ +
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS---- 68
Query: 209 QCQSLDESECRNNTCLYEVSYGDGS------YTTVTLGSASVDNIAIGCGHNNEGLFV 260
Q L ++YG GS Y TV +G S N G G F+
Sbjct: 69 --QEL------------SITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 24/118 (20%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
EYF +GIG P ++ DTGS W+ C+ F P SS++ +
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS---- 68
Query: 209 QCQSLDESECRNNTCLYEVSYGDGS------YTTVTLGSASVDNIAIGCGHNNEGLFV 260
Q L ++YG GS Y TV +G S N G G F+
Sbjct: 69 --QEL------------SITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 24/118 (20%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
EYF +GIG P ++ DTGS W+ C+ F P SS++ +
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS---- 68
Query: 209 QCQSLDESECRNNTCLYEVSYGDGS------YTTVTLGSASVDNIAIGCGHNNEGLFV 260
Q L ++YG GS Y TV +G S N G G F+
Sbjct: 69 --QEL------------SITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 131/345 (37%), Gaps = 51/345 (14%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
EYF +GIG P ++ DTGS W+ C+ F P SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------A 66
Query: 209 QCQSLDESECRNNTCLYEVSYGDGS------YTTVTLGSASVDNIAIGCGHNNEGLFVXX 262
Q L ++YG GS Y TV +G S N G G F+
Sbjct: 67 TXQEL------------SITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFL-- 112
Query: 263 XXXXXXXXXXXSFPSQINASTFSYCLVD-RDSDSTSTLEFDSSLPPNAVTAPLLRNHELD 321
++PS I+AS + + D S F L N + ++ +D
Sbjct: 113 YYAPFDGILGLAYPS-ISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGID 171
Query: 322 TFYYLG---LTGISVGG----DLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 374
+ YY G +SV G L I+ I SG IVD+GT++ T +
Sbjct: 172 SSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANI 231
Query: 375 RDAFVRGTRALSPTDGVALFDTCYDFSSRSSVE-VPTVSFHFPEGKVLPLPAKNFLIPVD 433
+ A +DG + S SS++ +P + F +G PL +++ D
Sbjct: 232 Q----SDIGASENSDGEMVI-------SCSSIDSLPDIVFTI-DGVQYPLSPSAYILQDD 279
Query: 434 SNGTFCFAF--APTSSS-LSIIGNVQQQGTRVSFNLRNSLVGFTP 475
+ T F PTSS L I+G+V + F+ N+ VG P
Sbjct: 280 DSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 324
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 24/118 (20%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
EYF +GIG P ++ DTGS W+ C+ F P SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------A 66
Query: 209 QCQSLDESECRNNTCLYEVSYGDGS------YTTVTLGSASVDNIAIGCGHNNEGLFV 260
Q L ++YG GS Y TV +G S N G G F+
Sbjct: 67 TXQEL------------SITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFL 112
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 36/116 (31%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
+Y VG+G P + +++DTGS WL AD + TS+SS +
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTWL----------GADKSYVKTSTSSATS------ 56
Query: 209 QCQSLDESECRNNTCLYEVSYGDGSYT------TVTLGSASVDNIAIGCGHNNEGL 258
D+ V+YG GS++ TVTLGS ++ +IG + G
Sbjct: 57 -----DK---------VSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGF 98
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPL 203
+YF ++ +G PP + ++ DTGS W+ C + F+P SS++ L
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPL 203
+YF ++ +G PP + ++ DTGS W+ C + F+P SS++ L
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 4/141 (2%)
Query: 337 LLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDT 396
+ P+++ + I S +GG ++ + T LQ Y A F + + VA F
Sbjct: 244 VFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGL 303
Query: 397 CYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAF---APTSSSLSIIG 453
C++ + ++ + P G V + ++ ++ G C + +G
Sbjct: 304 CFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQP-GVTCLGVMNGGMQPRAEITLG 362
Query: 454 NVQQQGTRVSFNLRNSLVGFT 474
Q + V F+L S VGF+
Sbjct: 363 ARQLEENLVVFDLARSRVGFS 383
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 26/104 (25%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCAD--CYQQADPIFEPTSSSSYSPLTCN 206
+Y++ + +G PP ++LDTGS W+ C C+ + ++ +SSSY
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSY------ 65
Query: 207 TKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIG 250
+ N + + YG GS G S D ++IG
Sbjct: 66 ------------KANGTEFAIQYGTGSLE----GYISQDTLSIG 93
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 26/104 (25%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCAD--CYQQADPIFEPTSSSSYSPLTCN 206
+Y++ + +G PP ++LDTGS W+ C C+ + ++ +SSSY
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSY------ 65
Query: 207 TKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIG 250
+ N + + YG GS G S D ++IG
Sbjct: 66 ------------KANGTEFAIQYGTGSLE----GYISQDTLSIG 93
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 26/104 (25%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCAD--CYQQADPIFEPTSSSSYSPLTCN 206
+Y++ + +G PP ++LDTGS W+ C C+ + ++ +SSSY
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSY------ 65
Query: 207 TKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIG 250
+ N + + YG GS G S D ++IG
Sbjct: 66 ------------KANGTEFAIQYGTGSLE----GYISQDTLSIG 93
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 307 PNAVTAPLLRNHELDTFYYLGLTGISVGGDL-LPISETAFKI---DESGNGGIIVDSGTA 362
PNA T ++ Y L + V D L I+ + K + +GN +++DSGT
Sbjct: 162 PNAATGQIIFGGVDKAKYSGSLIAVPVTSDRELRITLNSLKAVGKNINGNIDVLLDSGTT 221
Query: 363 VTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLP 422
+T LQ + + DAF +A +DG T Y ++S TV F+F +
Sbjct: 222 ITYLQQDVAQDIIDAF----QAELKSDGQG--HTFYVTDCQTS---GTVDFNFDNNAKIS 272
Query: 423 LPAKNFLIPV 432
+PA F P+
Sbjct: 273 VPASEFTAPL 282
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCAD---CYQQADPIFEPTSSSSYSPLTC 205
EY V IG P Y++ DTGS W+ C + C + F+P+SSS++
Sbjct: 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKR--FFDPSSSSTFKETDY 76
Query: 206 N 206
N
Sbjct: 77 N 77
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 22/128 (17%)
Query: 137 GPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQ-----CAPCADCYQQADPI 191
GP+ + Y + + +G ++ +++DTGS W+ C P + D
Sbjct: 1 GPVAVTLHNEAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPK----WRGDKG 56
Query: 192 FEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIGC 251
S+ SYSP + T Q N +++ YGDGSY G D + IG
Sbjct: 57 DFCKSAGSYSPASSRTSQ----------NLNTRFDIKYGDGSYAK---GKLYKDTVGIGG 103
Query: 252 GHNNEGLF 259
+ LF
Sbjct: 104 VSVRDQLF 111
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPC 181
+Y+ +GIG PP +V DTGS W+ C
Sbjct: 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHC 46
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWL---QCAPCADCYQQADPIFEPTSSSSYSPLTC 205
EY V IG P ++ DTGS W+ C C F+P++SS++
Sbjct: 19 EYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCV--GSRFFDPSASSTFKATNY 76
Query: 206 NTKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNI 247
N ++ N +E S G T A VDN+
Sbjct: 77 NL----NITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNV 114
>pdb|9PCY|A Chain A, High-Resolution Solution Structure Of Reduced French Bean
Plastocyanin And Comparison With The Crystal Structure
Of Poplar Plastocyanin
Length = 99
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 408 VPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAP 444
V V PE ++L P + +++ +D+ GT+ F +P
Sbjct: 50 VDAVKISMPEEELLNAPGETYVVTLDTKGTYSFYCSP 86
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 342 ETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALF------- 394
E + K + N +++DSGT +T LQ + + + AF + ++G + +
Sbjct: 202 EVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAF--NGKLTQDSNGNSFYEVDCNLS 259
Query: 395 -DTCYDFSSRSSVEVPTVSF 413
D ++FS + + VP F
Sbjct: 260 GDVVFNFSKNAKISVPASEF 279
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 342 ETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALF------- 394
E + K + N +++DSGT +T LQ + + + AF + ++G + +
Sbjct: 202 EVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAF--NGKLTQDSNGNSFYEVDCNLS 259
Query: 395 -DTCYDFSSRSSVEVPTVSF 413
D ++FS + + VP F
Sbjct: 260 GDVVFNFSKNAKISVPASDF 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,852,900
Number of Sequences: 62578
Number of extensions: 507301
Number of successful extensions: 1155
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 80
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)